Query 005740
Match_columns 680
No_of_seqs 406 out of 2731
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 13:03:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 1E-128 2E-133 1073.0 67.1 554 118-678 133-707 (716)
2 KOG0055 Multidrug/pheromone ex 100.0 5E-112 1E-116 986.6 67.1 554 119-677 651-1227(1228)
3 COG2274 SunT ABC-type bacterio 100.0 4E-108 9E-113 941.8 70.3 551 119-676 141-709 (709)
4 TIGR00958 3a01208 Conjugate Tr 100.0 2E-102 4E-107 914.3 71.9 615 49-672 78-711 (711)
5 COG1132 MdlB ABC-type multidru 100.0 8E-102 2E-106 889.3 73.0 546 120-677 4-566 (567)
6 PRK11174 cysteine/glutathione 100.0 3E-101 7E-106 888.5 73.9 550 119-678 9-587 (588)
7 KOG0055 Multidrug/pheromone ex 100.0 1E-103 3E-108 915.7 51.9 469 203-676 118-589 (1228)
8 PTZ00265 multidrug resistance 100.0 3.1E-98 7E-103 925.4 73.9 551 119-675 812-1465(1466)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.9E-97 8E-102 868.1 75.2 543 121-675 124-685 (686)
10 TIGR01193 bacteriocin_ABC ABC- 100.0 3.2E-97 7E-102 871.6 72.1 547 119-673 143-707 (708)
11 PRK11160 cysteine/glutathione 100.0 5.6E-96 1E-100 840.9 73.6 546 120-674 4-573 (574)
12 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.8E-96 6E-101 864.2 71.7 545 119-672 141-709 (710)
13 KOG0056 Heavy metal exporter H 100.0 6E-100 1E-104 799.2 35.6 467 202-676 305-775 (790)
14 PRK11176 lipid transporter ATP 100.0 3.1E-95 7E-100 837.8 75.0 555 116-677 9-581 (582)
15 TIGR03375 type_I_sec_LssB type 100.0 3.1E-95 7E-100 853.0 72.9 538 119-664 134-689 (694)
16 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-93 3.4E-98 838.3 74.6 549 120-676 127-693 (694)
17 PRK10790 putative multidrug tr 100.0 2.6E-93 5.7E-98 823.0 74.2 550 116-677 7-577 (592)
18 KOG0057 Mitochondrial Fe/S clu 100.0 2E-94 4.4E-99 774.6 57.9 537 132-678 30-589 (591)
19 TIGR02203 MsbA_lipidA lipid A 100.0 5.6E-92 1.2E-96 809.0 73.9 550 121-677 3-570 (571)
20 PRK13657 cyclic beta-1,2-gluca 100.0 9.8E-92 2.1E-96 809.1 75.7 552 117-677 4-572 (588)
21 TIGR01192 chvA glucan exporter 100.0 2.8E-91 6.1E-96 803.3 75.7 551 117-676 4-571 (585)
22 COG5265 ATM1 ABC-type transpor 100.0 1.3E-94 2.9E-99 753.4 37.1 466 201-673 27-496 (497)
23 TIGR02868 CydC thiol reductant 100.0 3.5E-91 7.6E-96 795.2 67.3 506 121-635 2-529 (529)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3.9E-90 8.4E-95 794.5 74.1 553 118-675 4-575 (576)
25 COG4988 CydD ABC-type transpor 100.0 5.3E-90 1.1E-94 752.0 67.8 467 203-677 87-557 (559)
26 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-90 6.4E-95 862.3 71.6 464 202-675 1051-1520(1522)
27 PRK10789 putative multidrug tr 100.0 1.2E-89 2.6E-94 788.1 70.3 467 203-677 83-552 (569)
28 PTZ00265 multidrug resistance 100.0 1.4E-88 3.1E-93 839.5 72.0 552 120-676 47-729 (1466)
29 PLN03130 ABC transporter C fam 100.0 1.6E-88 3.5E-93 846.1 72.1 464 202-676 999-1475(1622)
30 COG4987 CydC ABC-type transpor 100.0 9.3E-88 2E-92 722.8 61.1 539 128-674 12-572 (573)
31 TIGR02857 CydD thiol reductant 100.0 2.2E-87 4.9E-92 764.0 68.1 509 131-647 2-529 (529)
32 PTZ00243 ABC transporter; Prov 100.0 2.3E-87 4.9E-92 834.7 73.6 469 202-677 1044-1548(1560)
33 PLN03232 ABC transporter C fam 100.0 1.6E-87 3.5E-92 836.7 70.0 465 202-677 996-1473(1495)
34 TIGR01842 type_I_sec_PrtD type 100.0 5.4E-86 1.2E-90 754.5 70.7 523 128-664 2-543 (544)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.8E-83 2.1E-87 728.6 64.4 519 119-655 4-551 (555)
36 TIGR01271 CFTR_protein cystic 100.0 2.6E-82 5.6E-87 788.9 71.5 465 202-677 971-1454(1490)
37 KOG0054 Multidrug resistance-a 100.0 3.9E-83 8.4E-88 761.2 58.8 463 203-675 905-1375(1381)
38 COG4618 ArpD ABC-type protease 100.0 1.2E-78 2.5E-83 646.7 52.1 528 127-664 18-561 (580)
39 PLN03232 ABC transporter C fam 100.0 5.7E-77 1.2E-81 742.1 70.3 521 127-676 296-841 (1495)
40 PLN03130 ABC transporter C fam 100.0 7.3E-76 1.6E-80 732.6 71.5 524 127-675 296-840 (1622)
41 PRK10522 multidrug transporter 100.0 2E-75 4.4E-80 667.6 65.6 518 123-665 4-541 (547)
42 TIGR00954 3a01203 Peroxysomal 100.0 2E-72 4.3E-77 653.2 64.1 514 115-649 74-653 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 5.2E-68 1.1E-72 662.6 70.9 528 126-675 311-862 (1522)
44 KOG0054 Multidrug resistance-a 100.0 4.3E-65 9.2E-70 607.0 62.1 522 128-674 197-742 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 2.2E-64 4.7E-69 628.4 70.4 518 128-673 76-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 7.3E-62 1.6E-66 606.2 68.7 524 126-674 238-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 7.8E-57 1.7E-61 469.7 28.2 236 433-676 1-238 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 4E-54 8.7E-59 417.1 21.7 216 434-665 2-227 (240)
49 PRK14257 phosphate ABC transpo 100.0 3.4E-52 7.5E-57 445.4 26.7 222 431-664 77-314 (329)
50 COG1135 AbcC ABC-type metal io 100.0 9.5E-53 2.1E-57 426.8 21.0 219 435-664 2-232 (339)
51 cd03252 ABCC_Hemolysin The ABC 100.0 9.8E-52 2.1E-56 423.4 28.2 234 435-674 1-236 (237)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 1E-50 2.2E-55 421.1 29.2 239 430-675 15-256 (257)
53 COG1125 OpuBA ABC-type proline 100.0 1E-51 2.3E-56 407.6 19.2 215 435-664 2-226 (309)
54 cd03253 ABCC_ATM1_transporter 100.0 3.6E-50 7.8E-55 411.4 28.0 233 435-674 1-235 (236)
55 cd03251 ABCC_MsbA MsbA is an e 100.0 5.2E-50 1.1E-54 409.8 27.1 231 435-671 1-233 (234)
56 COG1117 PstB ABC-type phosphat 100.0 7.1E-51 1.5E-55 392.7 18.1 220 433-664 6-238 (253)
57 cd03254 ABCC_Glucan_exporter_l 100.0 9.1E-50 2E-54 406.7 27.4 227 433-666 1-229 (229)
58 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-49 2.7E-54 408.1 27.6 235 435-674 1-237 (238)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 1.8E-49 3.8E-54 402.3 27.0 218 433-657 1-220 (221)
60 TIGR02314 ABC_MetN D-methionin 100.0 1.6E-49 3.4E-54 426.0 26.1 228 435-673 2-242 (343)
61 PRK13631 cbiO cobalt transport 100.0 2.7E-49 5.9E-54 421.8 25.5 220 434-663 21-265 (320)
62 cd03261 ABC_Org_Solvent_Resist 100.0 6.1E-49 1.3E-53 402.3 24.3 221 435-669 1-232 (235)
63 COG1120 FepC ABC-type cobalami 100.0 5E-49 1.1E-53 399.7 22.0 217 434-664 2-229 (258)
64 cd03245 ABCC_bacteriocin_expor 100.0 2.9E-48 6.2E-53 393.2 27.0 218 433-656 1-220 (220)
65 COG1122 CbiO ABC-type cobalt t 100.0 8.6E-49 1.9E-53 397.4 23.1 218 434-665 3-230 (235)
66 COG3840 ThiQ ABC-type thiamine 100.0 9.6E-49 2.1E-53 368.6 20.6 215 435-667 2-223 (231)
67 PRK13650 cbiO cobalt transport 100.0 2.4E-48 5.3E-53 407.8 26.1 221 434-665 4-231 (279)
68 COG3839 MalK ABC-type sugar tr 100.0 1.5E-48 3.3E-53 410.5 23.8 215 434-664 3-224 (338)
69 COG4615 PvdE ABC-type sideroph 100.0 1.3E-45 2.8E-50 382.0 44.3 507 123-656 4-530 (546)
70 COG1136 SalX ABC-type antimicr 100.0 5.6E-48 1.2E-52 384.8 24.1 209 435-654 2-222 (226)
71 cd03260 ABC_PstB_phosphate_tra 100.0 3.8E-48 8.2E-53 394.3 22.3 213 435-661 1-227 (227)
72 cd03248 ABCC_TAP TAP, the Tran 100.0 1E-47 2.2E-52 390.9 24.7 217 431-652 8-226 (226)
73 PRK11153 metN DL-methionine tr 100.0 1.2E-47 2.6E-52 413.3 25.9 228 435-673 2-242 (343)
74 COG1124 DppF ABC-type dipeptid 100.0 8.1E-48 1.8E-52 380.5 22.4 227 434-671 3-240 (252)
75 PRK13647 cbiO cobalt transport 100.0 2.5E-47 5.4E-52 399.2 25.3 215 434-662 4-226 (274)
76 PRK13642 cbiO cobalt transport 100.0 4.7E-47 1E-51 397.8 27.0 222 434-666 4-232 (277)
77 PRK14269 phosphate ABC transpo 100.0 2E-47 4.4E-52 393.8 23.8 219 434-664 2-231 (246)
78 PRK13635 cbiO cobalt transport 100.0 3.6E-47 7.9E-52 398.9 25.7 222 434-667 5-233 (279)
79 COG1127 Ttg2A ABC-type transpo 100.0 3.3E-47 7.1E-52 374.4 23.6 226 433-672 7-245 (263)
80 PRK11650 ugpC glycerol-3-phosp 100.0 2.6E-47 5.6E-52 411.7 25.0 216 434-664 3-225 (356)
81 cd03256 ABC_PhnC_transporter A 100.0 3.5E-47 7.5E-52 390.5 24.5 216 435-663 1-234 (241)
82 PRK14250 phosphate ABC transpo 100.0 7.9E-47 1.7E-51 388.3 27.1 225 434-672 3-231 (241)
83 PRK13643 cbiO cobalt transport 100.0 4.9E-47 1.1E-51 399.6 25.9 218 435-664 2-234 (288)
84 TIGR00960 3a0501s02 Type II (G 100.0 2E-47 4.2E-52 386.1 21.9 205 435-652 2-216 (216)
85 PRK14273 phosphate ABC transpo 100.0 2.8E-47 6E-52 394.6 23.5 220 433-664 6-239 (254)
86 cd03258 ABC_MetN_methionine_tr 100.0 4.8E-47 1E-51 387.7 24.7 219 435-664 2-231 (233)
87 cd03296 ABC_CysA_sulfate_impor 100.0 3.6E-47 7.8E-52 390.3 23.8 216 434-665 2-228 (239)
88 PRK13646 cbiO cobalt transport 100.0 5.2E-47 1.1E-51 399.2 24.9 224 434-666 2-238 (286)
89 cd03219 ABC_Mj1267_LivG_branch 100.0 4.2E-47 9.1E-52 388.8 23.5 221 435-664 1-233 (236)
90 cd03263 ABC_subfamily_A The AB 100.0 4.5E-47 9.8E-52 384.5 23.5 212 435-661 1-219 (220)
91 PRK13637 cbiO cobalt transport 100.0 6.7E-47 1.5E-51 398.4 25.6 219 435-664 3-235 (287)
92 COG2884 FtsE Predicted ATPase 100.0 1.4E-47 3.1E-52 363.6 18.2 210 435-658 2-221 (223)
93 TIGR02315 ABC_phnC phosphonate 100.0 6.4E-47 1.4E-51 389.1 24.6 215 435-662 2-234 (243)
94 cd03224 ABC_TM1139_LivF_branch 100.0 5.4E-47 1.2E-51 384.3 23.7 218 435-663 1-221 (222)
95 COG4178 ABC-type uncharacteriz 100.0 2.9E-43 6.2E-48 391.3 55.4 413 217-649 152-588 (604)
96 COG3842 PotA ABC-type spermidi 100.0 1.7E-47 3.7E-52 404.5 20.3 217 433-665 4-228 (352)
97 PRK11432 fbpC ferric transport 100.0 4.3E-47 9.4E-52 409.0 23.8 216 433-664 5-227 (351)
98 PRK13632 cbiO cobalt transport 100.0 1.1E-46 2.3E-51 393.9 25.7 220 434-665 7-233 (271)
99 COG1116 TauB ABC-type nitrate/ 100.0 4.5E-47 9.8E-52 378.6 21.5 200 434-653 3-212 (248)
100 cd03259 ABC_Carb_Solutes_like 100.0 3.3E-47 7.2E-52 383.6 20.9 206 435-656 1-213 (213)
101 PRK11629 lolD lipoprotein tran 100.0 1.1E-46 2.3E-51 385.3 24.5 213 434-657 5-228 (233)
102 PRK13633 cobalt transporter AT 100.0 1.1E-46 2.4E-51 395.6 25.2 222 434-666 4-236 (280)
103 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-46 4E-51 376.6 25.7 204 432-658 4-207 (207)
104 PRK13652 cbiO cobalt transport 100.0 1.6E-46 3.5E-51 393.7 26.1 219 435-666 4-230 (277)
105 PRK13636 cbiO cobalt transport 100.0 1.3E-46 2.9E-51 395.4 25.4 219 434-665 5-233 (283)
106 TIGR01186 proV glycine betaine 100.0 5.9E-47 1.3E-51 408.3 23.0 204 450-664 6-220 (363)
107 PRK14242 phosphate transporter 100.0 8.7E-47 1.9E-51 390.6 23.2 219 434-664 6-238 (253)
108 TIGR00972 3a0107s01c2 phosphat 100.0 1.1E-46 2.4E-51 388.5 23.9 218 435-664 2-233 (247)
109 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.3E-46 1.6E-50 388.5 30.2 239 407-672 15-256 (282)
110 PRK13634 cbiO cobalt transport 100.0 1.6E-46 3.6E-51 396.0 25.3 222 434-665 2-237 (290)
111 TIGR03265 PhnT2 putative 2-ami 100.0 1.1E-46 2.4E-51 406.4 24.4 215 434-664 4-225 (353)
112 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.2E-46 2.6E-51 393.0 23.8 221 436-670 26-258 (269)
113 cd03250 ABCC_MRP_domain1 Domai 100.0 1.8E-46 3.9E-51 375.8 23.9 199 435-651 1-204 (204)
114 PRK10575 iron-hydroxamate tran 100.0 2.4E-46 5.2E-51 390.0 25.2 224 434-672 11-245 (265)
115 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.6E-46 5.6E-51 383.2 25.1 225 435-672 2-232 (236)
116 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-46 4.7E-51 387.5 24.6 216 435-664 1-237 (252)
117 PRK10744 pstB phosphate transp 100.0 2.1E-46 4.6E-51 389.3 24.6 219 432-664 11-245 (260)
118 cd03266 ABC_NatA_sodium_export 100.0 2.4E-46 5.2E-51 378.6 23.9 209 435-656 2-218 (218)
119 COG3638 ABC-type phosphate/pho 100.0 1E-46 2.3E-51 369.9 20.4 224 434-670 3-246 (258)
120 PRK13640 cbiO cobalt transport 100.0 5E-46 1.1E-50 390.9 27.0 219 434-664 5-233 (282)
121 PRK14267 phosphate ABC transpo 100.0 1.9E-46 4.1E-51 388.1 23.4 220 434-665 4-239 (253)
122 cd03265 ABC_DrrA DrrA is the A 100.0 2.5E-46 5.3E-51 379.3 23.7 212 435-661 1-219 (220)
123 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.8E-46 6.1E-51 377.7 24.0 212 434-664 4-228 (254)
124 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-46 4.1E-51 385.6 23.2 217 435-664 1-226 (242)
125 PRK14247 phosphate ABC transpo 100.0 2.4E-46 5.1E-51 386.7 23.8 219 434-664 3-235 (250)
126 cd03264 ABC_drug_resistance_li 100.0 1.7E-46 3.6E-51 378.0 22.2 204 435-656 1-211 (211)
127 PRK09536 btuD corrinoid ABC tr 100.0 2.5E-46 5.4E-51 408.2 25.2 223 434-672 3-236 (402)
128 TIGR02211 LolD_lipo_ex lipopro 100.0 2.4E-46 5.3E-51 379.4 23.3 208 435-653 2-220 (221)
129 PRK13648 cbiO cobalt transport 100.0 4.1E-46 8.8E-51 389.1 25.4 222 434-667 7-235 (269)
130 PRK11124 artP arginine transpo 100.0 3.5E-46 7.6E-51 383.6 24.4 217 434-665 2-232 (242)
131 PRK15079 oligopeptide ABC tran 100.0 4.8E-46 1E-50 398.4 26.2 226 434-670 8-259 (331)
132 PRK09452 potA putrescine/sperm 100.0 2.9E-46 6.4E-51 405.3 24.9 215 434-664 14-235 (375)
133 PRK10851 sulfate/thiosulfate t 100.0 3.2E-46 6.9E-51 402.8 25.0 215 434-664 2-227 (353)
134 cd03226 ABC_cobalt_CbiO_domain 100.0 1.4E-46 3.1E-51 376.9 20.7 201 436-653 1-205 (205)
135 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.5E-46 3.2E-51 380.1 20.9 207 435-652 1-218 (218)
136 PRK14235 phosphate transporter 100.0 2.8E-46 6E-51 389.9 23.6 221 432-664 17-252 (267)
137 PRK13644 cbiO cobalt transport 100.0 5.1E-46 1.1E-50 389.2 25.6 216 435-664 2-225 (274)
138 PRK13651 cobalt transporter AT 100.0 3.8E-46 8.3E-51 395.2 24.7 219 434-664 2-255 (305)
139 PRK09493 glnQ glutamine ABC tr 100.0 4E-46 8.6E-51 382.7 24.0 215 435-664 2-226 (240)
140 cd03301 ABC_MalK_N The N-termi 100.0 2.9E-46 6.2E-51 376.7 22.4 206 435-656 1-213 (213)
141 PRK11231 fecE iron-dicitrate t 100.0 4.1E-46 8.9E-51 386.1 24.0 224 435-674 3-237 (255)
142 cd03268 ABC_BcrA_bacitracin_re 100.0 3.1E-46 6.7E-51 375.2 22.3 205 435-656 1-208 (208)
143 PRK11614 livF leucine/isoleuci 100.0 4.8E-46 1E-50 381.4 24.0 219 434-664 5-227 (237)
144 PRK14251 phosphate ABC transpo 100.0 3.2E-46 6.8E-51 386.0 22.4 220 434-665 4-237 (251)
145 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.7E-46 5.8E-51 379.0 21.5 208 435-658 1-218 (220)
146 PRK11831 putative ABC transpor 100.0 7.3E-46 1.6E-50 387.2 25.3 226 434-673 7-244 (269)
147 TIGR02769 nickel_nikE nickel i 100.0 9.8E-46 2.1E-50 385.4 26.3 227 435-672 3-250 (265)
148 TIGR02673 FtsE cell division A 100.0 3.7E-46 8.1E-51 376.1 22.0 203 435-651 2-214 (214)
149 cd03218 ABC_YhbG The ABC trans 100.0 6.7E-46 1.5E-50 378.9 24.0 216 435-663 1-222 (232)
150 PRK14240 phosphate transporter 100.0 6.2E-46 1.3E-50 383.6 23.7 220 433-664 2-235 (250)
151 PRK11000 maltose/maltodextrin 100.0 6.3E-46 1.4E-50 403.3 24.7 215 434-664 3-224 (369)
152 cd03225 ABC_cobalt_CbiO_domain 100.0 4.1E-46 8.9E-51 375.0 21.6 203 436-651 1-211 (211)
153 PRK11264 putative amino-acid A 100.0 1.2E-45 2.5E-50 381.5 25.3 217 435-664 4-234 (250)
154 PRK10619 histidine/lysine/argi 100.0 1.1E-45 2.4E-50 383.3 25.3 218 433-664 4-242 (257)
155 PRK13638 cbiO cobalt transport 100.0 1.2E-45 2.6E-50 385.9 25.5 216 435-665 2-227 (271)
156 TIGR03258 PhnT 2-aminoethylpho 100.0 6.6E-46 1.4E-50 401.1 24.2 218 432-664 3-229 (362)
157 cd03292 ABC_FtsE_transporter F 100.0 5.8E-46 1.3E-50 374.6 22.1 204 435-652 1-214 (214)
158 PRK14274 phosphate ABC transpo 100.0 8.1E-46 1.7E-50 384.8 23.5 219 434-664 12-244 (259)
159 TIGR03411 urea_trans_UrtD urea 100.0 1.7E-45 3.7E-50 378.4 25.4 211 435-663 3-231 (242)
160 TIGR03410 urea_trans_UrtE urea 100.0 1.3E-45 2.9E-50 376.4 24.3 213 435-662 1-220 (230)
161 PRK10584 putative ABC transpor 100.0 1.5E-45 3.3E-50 375.4 24.7 211 434-655 6-227 (228)
162 PRK14239 phosphate transporter 100.0 1E-45 2.3E-50 382.3 23.7 219 434-664 5-237 (252)
163 PRK13645 cbiO cobalt transport 100.0 1.4E-45 3.1E-50 388.9 25.2 222 432-664 4-241 (289)
164 PRK13649 cbiO cobalt transport 100.0 1.3E-45 2.9E-50 387.5 24.8 218 435-664 3-235 (280)
165 PRK14268 phosphate ABC transpo 100.0 8.9E-46 1.9E-50 384.3 23.2 219 434-664 12-243 (258)
166 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.7E-45 3.8E-50 370.6 24.2 204 435-656 1-211 (211)
167 PRK11247 ssuB aliphatic sulfon 100.0 1.7E-45 3.7E-50 381.4 24.8 207 433-659 11-219 (257)
168 cd03290 ABCC_SUR1_N The SUR do 100.0 1.9E-45 4.1E-50 372.3 24.5 209 436-651 2-218 (218)
169 PRK14237 phosphate transporter 100.0 1.3E-45 2.9E-50 384.8 24.0 219 432-664 18-252 (267)
170 PRK11308 dppF dipeptide transp 100.0 3.1E-45 6.7E-50 391.7 27.3 230 434-673 5-256 (327)
171 PRK10771 thiQ thiamine transpo 100.0 3.8E-45 8.3E-50 373.6 26.8 215 435-667 2-223 (232)
172 PRK14236 phosphate transporter 100.0 1.5E-45 3.3E-50 385.4 24.3 219 432-664 23-257 (272)
173 cd03300 ABC_PotA_N PotA is an 100.0 8.9E-46 1.9E-50 378.3 21.9 214 435-664 1-221 (232)
174 PRK10070 glycine betaine trans 100.0 1.6E-45 3.4E-50 401.6 25.2 212 451-673 42-266 (400)
175 PRK10908 cell division protein 100.0 1.5E-45 3.3E-50 374.0 23.3 206 435-654 2-217 (222)
176 PRK14256 phosphate ABC transpo 100.0 2.5E-45 5.5E-50 379.5 25.3 221 432-664 2-237 (252)
177 TIGR03873 F420-0_ABC_ATP propo 100.0 2E-45 4.4E-50 381.1 24.4 214 435-663 2-226 (256)
178 cd03257 ABC_NikE_OppD_transpor 100.0 2.9E-45 6.4E-50 373.0 25.1 213 435-656 2-228 (228)
179 PRK13548 hmuV hemin importer A 100.0 4.3E-45 9.2E-50 379.1 26.7 216 435-664 3-231 (258)
180 TIGR00968 3a0106s01 sulfate AB 100.0 1.6E-45 3.6E-50 377.5 23.3 214 435-664 1-221 (237)
181 PRK14249 phosphate ABC transpo 100.0 2.5E-45 5.5E-50 379.3 24.7 217 434-664 4-236 (251)
182 PRK15112 antimicrobial peptide 100.0 3.7E-45 7.9E-50 381.5 26.1 231 434-675 4-253 (267)
183 PRK11607 potG putrescine trans 100.0 1.6E-45 3.6E-50 400.0 24.3 216 433-664 18-240 (377)
184 PRK14245 phosphate ABC transpo 100.0 1.3E-45 2.8E-50 381.2 22.4 217 434-664 3-235 (250)
185 PRK13641 cbiO cobalt transport 100.0 2.6E-45 5.5E-50 386.5 25.0 219 434-664 2-235 (287)
186 PRK10247 putative ABC transpor 100.0 1.9E-45 4E-50 374.2 23.0 211 434-659 7-223 (225)
187 PRK14244 phosphate ABC transpo 100.0 1E-45 2.2E-50 382.2 21.3 216 435-664 6-238 (251)
188 cd03235 ABC_Metallic_Cations A 100.0 8.4E-46 1.8E-50 373.4 19.9 200 436-656 1-213 (213)
189 PRK13537 nodulation ABC transp 100.0 2.4E-45 5.2E-50 389.6 24.3 216 433-664 6-228 (306)
190 PRK13639 cbiO cobalt transport 100.0 3.4E-45 7.5E-50 383.3 25.0 216 435-664 2-227 (275)
191 TIGR01288 nodI ATP-binding ABC 100.0 2.9E-45 6.3E-50 389.0 24.7 215 434-664 4-225 (303)
192 PRK10253 iron-enterobactin tra 100.0 4.7E-45 1E-49 380.3 25.4 218 433-664 6-234 (265)
193 PRK14262 phosphate ABC transpo 100.0 2.4E-45 5.2E-50 379.2 22.9 224 434-671 3-243 (250)
194 PRK11022 dppD dipeptide transp 100.0 3.8E-45 8.3E-50 391.1 25.1 231 434-672 3-254 (326)
195 PRK11300 livG leucine/isoleuci 100.0 5E-45 1.1E-49 377.9 25.1 221 434-664 5-244 (255)
196 PRK10895 lipopolysaccharide AB 100.0 4.4E-45 9.5E-50 375.2 24.2 218 434-664 3-227 (241)
197 PRK14253 phosphate ABC transpo 100.0 3.4E-45 7.3E-50 377.9 23.3 219 434-664 3-234 (249)
198 cd03247 ABCC_cytochrome_bd The 100.0 2.9E-45 6.3E-50 359.4 21.6 178 435-656 1-178 (178)
199 PRK14259 phosphate ABC transpo 100.0 6E-45 1.3E-49 380.3 25.2 220 433-664 12-254 (269)
200 cd03262 ABC_HisP_GlnQ_permease 100.0 2.8E-45 6.1E-50 369.4 21.8 203 435-652 1-213 (213)
201 PRK14243 phosphate transporter 100.0 5.6E-45 1.2E-49 379.5 24.6 219 434-664 10-249 (264)
202 PRK14270 phosphate ABC transpo 100.0 5.6E-45 1.2E-49 376.7 24.2 219 434-664 4-236 (251)
203 PRK14260 phosphate ABC transpo 100.0 4E-45 8.7E-50 379.6 23.2 220 433-664 6-244 (259)
204 PRK14261 phosphate ABC transpo 100.0 6.7E-45 1.5E-49 376.6 24.7 225 434-672 6-247 (253)
205 TIGR01277 thiQ thiamine ABC tr 100.0 8.2E-45 1.8E-49 366.4 24.5 205 435-657 1-212 (213)
206 cd03269 ABC_putative_ATPase Th 100.0 3.4E-45 7.3E-50 368.2 21.5 203 435-656 1-210 (210)
207 PRK14248 phosphate ABC transpo 100.0 8.2E-45 1.8E-49 379.1 25.2 219 434-664 21-253 (268)
208 PRK14241 phosphate transporter 100.0 4.5E-45 9.7E-50 379.0 23.0 219 434-664 4-243 (258)
209 PRK14272 phosphate ABC transpo 100.0 4.2E-45 9.2E-50 377.7 22.6 219 434-664 4-237 (252)
210 TIGR01978 sufC FeS assembly AT 100.0 4.9E-45 1.1E-49 375.0 22.9 215 435-662 1-233 (243)
211 PRK14238 phosphate transporter 100.0 6.8E-45 1.5E-49 380.2 24.1 217 434-664 24-256 (271)
212 PRK14271 phosphate ABC transpo 100.0 1.1E-44 2.4E-49 379.5 25.6 217 434-664 21-252 (276)
213 PRK09984 phosphonate/organopho 100.0 1.4E-44 2.9E-49 376.2 26.0 226 434-675 4-252 (262)
214 cd03246 ABCC_Protease_Secretio 100.0 6.5E-45 1.4E-49 355.3 21.8 173 435-652 1-173 (173)
215 PRK14275 phosphate ABC transpo 100.0 7.5E-45 1.6E-49 382.7 23.5 220 433-664 38-271 (286)
216 PRK09473 oppD oligopeptide tra 100.0 1.4E-44 2.9E-49 387.2 25.9 229 434-672 12-262 (330)
217 cd03299 ABC_ModC_like Archeal 100.0 1.5E-44 3.2E-49 370.0 25.1 213 435-664 1-220 (235)
218 PRK14266 phosphate ABC transpo 100.0 1E-44 2.2E-49 374.6 23.9 219 434-664 3-235 (250)
219 TIGR03415 ABC_choXWV_ATP choli 100.0 6.6E-45 1.4E-49 394.2 23.1 218 439-670 29-262 (382)
220 PRK14254 phosphate ABC transpo 100.0 1.6E-44 3.5E-49 379.8 25.3 220 433-664 38-270 (285)
221 PRK14258 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 376.4 23.9 222 433-664 6-246 (261)
222 PRK11144 modC molybdate transp 100.0 1.3E-44 2.8E-49 391.1 24.9 213 435-665 2-220 (352)
223 PRK13547 hmuV hemin importer A 100.0 1.9E-44 4.1E-49 376.6 25.2 214 435-664 2-245 (272)
224 PRK14252 phosphate ABC transpo 100.0 1.8E-44 3.9E-49 376.0 24.6 219 432-664 14-250 (265)
225 PRK13536 nodulation factor exp 100.0 2.1E-44 4.6E-49 386.8 25.8 219 434-664 41-262 (340)
226 PRK15093 antimicrobial peptide 100.0 2.1E-44 4.6E-49 386.3 25.8 226 434-670 3-256 (330)
227 TIGR03522 GldA_ABC_ATP gliding 100.0 1.7E-44 3.6E-49 382.8 24.2 213 435-664 3-222 (301)
228 PRK14255 phosphate ABC transpo 100.0 1.6E-44 3.5E-49 373.5 22.9 219 434-664 5-237 (252)
229 PRK14263 phosphate ABC transpo 100.0 2.9E-44 6.3E-49 373.4 24.6 219 434-664 8-246 (261)
230 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-44 4.8E-49 365.0 23.1 207 435-652 2-219 (220)
231 PRK10419 nikE nickel transport 100.0 2.6E-44 5.7E-49 375.2 24.2 230 434-672 3-250 (268)
232 TIGR01188 drrA daunorubicin re 100.0 1.7E-44 3.7E-49 382.9 22.3 202 450-664 6-214 (302)
233 PRK11701 phnK phosphonate C-P 100.0 5.5E-44 1.2E-48 370.9 25.5 227 434-671 6-250 (258)
234 cd03234 ABCG_White The White s 100.0 1.5E-44 3.2E-49 367.8 20.5 212 435-656 4-226 (226)
235 PRK14265 phosphate ABC transpo 100.0 6.2E-44 1.3E-48 373.5 24.4 219 434-664 20-259 (274)
236 PRK14246 phosphate ABC transpo 100.0 3.9E-44 8.5E-49 371.6 22.6 228 433-672 9-251 (257)
237 PRK14264 phosphate ABC transpo 100.0 5.9E-44 1.3E-48 379.1 24.0 218 433-664 44-290 (305)
238 TIGR02142 modC_ABC molybdenum 100.0 6.8E-44 1.5E-48 385.9 24.5 210 439-665 4-223 (354)
239 PRK10418 nikD nickel transport 100.0 1.4E-43 3.1E-48 366.9 25.6 227 434-676 4-245 (254)
240 PRK11248 tauB taurine transpor 100.0 8.8E-44 1.9E-48 368.6 24.0 205 435-658 2-215 (255)
241 COG1118 CysA ABC-type sulfate/ 100.0 2.5E-44 5.5E-49 364.5 19.3 215 434-664 2-228 (345)
242 PRK09580 sufC cysteine desulfu 100.0 1.2E-43 2.7E-48 365.8 23.7 217 435-662 2-234 (248)
243 cd03233 ABC_PDR_domain1 The pl 100.0 1.4E-43 3E-48 354.6 22.6 193 434-656 3-202 (202)
244 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-43 2.7E-48 346.3 21.2 171 435-652 1-173 (173)
245 TIGR03740 galliderm_ABC gallid 100.0 1.6E-43 3.4E-48 359.5 22.5 207 435-660 1-210 (223)
246 cd03229 ABC_Class3 This class 100.0 2E-43 4.4E-48 346.4 21.0 174 435-651 1-178 (178)
247 CHL00131 ycf16 sulfate ABC tra 100.0 4.5E-43 9.7E-48 362.6 24.4 214 434-661 7-239 (252)
248 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-43 4.7E-48 350.4 20.8 183 434-656 3-192 (192)
249 PRK15056 manganese/iron transp 100.0 4.3E-43 9.4E-48 366.9 24.1 212 434-663 6-230 (272)
250 COG1131 CcmA ABC-type multidru 100.0 4.1E-43 8.9E-48 369.6 23.9 217 434-664 4-227 (293)
251 TIGR02323 CP_lyasePhnK phospho 100.0 7.2E-43 1.6E-47 361.3 25.3 225 434-670 3-246 (253)
252 PRK09544 znuC high-affinity zi 100.0 8.7E-43 1.9E-47 360.2 25.3 210 434-672 4-217 (251)
253 cd03297 ABC_ModC_molybdenum_tr 100.0 3.8E-43 8.2E-48 354.4 22.0 202 436-656 3-214 (214)
254 cd03213 ABCG_EPDR ABCG transpo 100.0 4.2E-43 9.1E-48 348.9 21.7 184 434-656 3-194 (194)
255 TIGR03608 L_ocin_972_ABC putat 100.0 2.9E-43 6.4E-48 352.8 20.2 196 437-647 1-206 (206)
256 cd03215 ABC_Carb_Monos_II This 100.0 4.4E-43 9.6E-48 345.2 20.7 173 434-652 4-182 (182)
257 cd03228 ABCC_MRP_Like The MRP 100.0 8.2E-43 1.8E-47 339.9 21.6 171 435-651 1-171 (171)
258 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.5E-42 3.3E-47 346.5 22.9 186 435-662 1-192 (200)
259 COG1123 ATPase components of v 100.0 1.7E-42 3.6E-47 380.9 23.1 228 434-672 280-529 (539)
260 cd03223 ABCD_peroxisomal_ALDP 100.0 1.9E-42 4.2E-47 335.6 21.0 164 435-651 1-164 (166)
261 PRK03695 vitamin B12-transport 100.0 4.3E-42 9.3E-47 354.6 24.8 217 435-672 1-230 (248)
262 TIGR01184 ntrCD nitrate transp 100.0 2.3E-42 5E-47 352.6 22.1 207 453-675 1-226 (230)
263 COG4175 ProV ABC-type proline/ 100.0 8.2E-43 1.8E-47 353.6 18.4 211 452-673 43-266 (386)
264 cd03231 ABC_CcmA_heme_exporter 100.0 4.7E-42 1E-46 343.2 22.9 196 435-647 1-198 (201)
265 PRK10261 glutathione transport 100.0 4.9E-42 1.1E-46 397.2 26.1 229 434-673 313-565 (623)
266 cd03214 ABC_Iron-Siderophores_ 100.0 2E-42 4.3E-47 340.0 19.3 179 436-656 1-180 (180)
267 PRK15439 autoinducer 2 ABC tra 100.0 4.6E-42 1E-46 389.4 25.0 215 434-663 11-229 (510)
268 TIGR02770 nickel_nikD nickel i 100.0 4.9E-42 1.1E-46 350.2 22.4 207 452-670 1-223 (230)
269 PRK13540 cytochrome c biogenes 100.0 3.3E-42 7.3E-47 344.0 20.8 196 435-646 2-198 (200)
270 cd03216 ABC_Carb_Monos_I This 100.0 9E-42 2E-46 330.0 21.7 160 435-654 1-162 (163)
271 PRK13549 xylose transporter AT 100.0 2.8E-42 6.1E-47 391.0 21.2 216 434-662 5-231 (506)
272 PRK09700 D-allose transporter 100.0 3.8E-42 8.2E-47 390.4 21.5 215 434-663 5-234 (510)
273 PRK13538 cytochrome c biogenes 100.0 1E-41 2.2E-46 341.5 21.4 197 435-647 2-202 (204)
274 PRK10762 D-ribose transporter 100.0 5.4E-42 1.2E-46 388.3 20.9 216 434-662 4-229 (501)
275 cd03267 ABC_NatA_like Similar 100.0 1.2E-41 2.5E-46 348.8 21.3 195 450-656 34-236 (236)
276 PLN03211 ABC transporter G-25; 100.0 2.2E-41 4.8E-46 391.9 25.7 202 450-663 81-296 (659)
277 PRK10938 putative molybdenum t 100.0 1.7E-41 3.6E-46 383.4 23.8 212 435-664 4-225 (490)
278 PRK13539 cytochrome c biogenes 100.0 2.3E-41 5.1E-46 339.8 21.4 196 435-649 3-200 (207)
279 PRK10261 glutathione transport 100.0 1.9E-41 4.1E-46 392.3 23.8 223 434-664 12-259 (623)
280 PRK15134 microcin C ABC transp 100.0 1.5E-41 3.2E-46 387.1 22.4 219 434-664 275-516 (529)
281 PRK13543 cytochrome c biogenes 100.0 3E-41 6.5E-46 340.7 22.1 198 434-649 11-212 (214)
282 PRK11288 araG L-arabinose tran 100.0 1.3E-41 2.7E-46 385.2 21.5 210 434-658 4-224 (501)
283 PRK15134 microcin C ABC transp 100.0 3.4E-41 7.4E-46 384.2 24.3 223 434-664 5-247 (529)
284 COG0444 DppD ABC-type dipeptid 100.0 5.8E-41 1.3E-45 345.6 23.5 226 435-673 2-255 (316)
285 PRK10982 galactose/methyl gala 100.0 2.8E-41 6.1E-46 381.6 23.1 213 437-662 1-222 (491)
286 TIGR01189 ccmA heme ABC export 100.0 2.2E-41 4.8E-46 337.5 19.6 195 435-646 1-197 (198)
287 COG4555 NatA ABC-type Na+ tran 100.0 1.7E-41 3.8E-46 324.6 17.5 215 435-664 2-223 (245)
288 PRK10535 macrolide transporter 100.0 8E-41 1.7E-45 388.5 26.1 217 434-662 4-231 (648)
289 COG4608 AppF ABC-type oligopep 100.0 2.4E-41 5.1E-46 341.7 18.8 194 434-669 4-206 (268)
290 COG1123 ATPase components of v 100.0 3.9E-41 8.4E-46 370.1 21.7 220 434-664 5-245 (539)
291 TIGR02324 CP_lyasePhnL phospho 100.0 6E-41 1.3E-45 340.7 21.2 202 435-647 2-222 (224)
292 TIGR00955 3a01204 The Eye Pigm 100.0 2.1E-41 4.5E-46 391.6 19.6 219 433-663 16-256 (617)
293 TIGR03269 met_CoM_red_A2 methy 100.0 6.1E-41 1.3E-45 381.4 23.1 224 434-663 279-517 (520)
294 TIGR03771 anch_rpt_ABC anchore 100.0 5.4E-41 1.2E-45 341.0 20.0 196 458-672 1-209 (223)
295 TIGR02633 xylG D-xylose ABC tr 100.0 6.2E-41 1.3E-45 379.7 21.9 214 435-661 2-228 (500)
296 TIGR03269 met_CoM_red_A2 methy 100.0 9E-41 1.9E-45 380.0 22.4 216 435-664 1-259 (520)
297 COG4619 ABC-type uncharacteriz 100.0 2.8E-41 6E-46 314.2 14.5 194 449-654 15-214 (223)
298 TIGR01166 cbiO cobalt transpor 100.0 7.6E-41 1.7E-45 331.4 18.6 176 450-637 5-189 (190)
299 PRK13545 tagH teichoic acids e 100.0 3.2E-40 7E-45 364.2 25.3 215 434-673 21-242 (549)
300 COG0410 LivF ABC-type branched 100.0 2.6E-40 5.6E-45 325.1 21.8 221 435-666 4-229 (237)
301 PRK13549 xylose transporter AT 100.0 6.6E-41 1.4E-45 379.8 20.4 219 434-662 259-493 (506)
302 PRK13541 cytochrome c biogenes 100.0 1.3E-40 2.8E-45 331.2 19.8 191 435-645 2-193 (195)
303 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.5E-40 3.2E-45 338.0 19.6 196 435-656 23-224 (224)
304 COG4181 Predicted ABC-type tra 100.0 1.4E-40 3.1E-45 310.4 17.3 211 434-655 6-227 (228)
305 PRK13546 teichoic acids export 100.0 6.7E-40 1.4E-44 340.8 24.1 199 450-673 37-242 (264)
306 COG4172 ABC-type uncharacteriz 100.0 6.4E-40 1.4E-44 341.1 23.8 225 433-669 275-523 (534)
307 COG0411 LivG ABC-type branched 100.0 1.3E-40 2.8E-45 329.6 15.8 215 435-665 5-241 (250)
308 COG4559 ABC-type hemin transpo 100.0 1.4E-39 3E-44 313.9 20.6 216 435-665 2-232 (259)
309 PRK09700 D-allose transporter 100.0 4.4E-40 9.5E-45 373.5 20.2 212 434-660 265-495 (510)
310 COG1129 MglA ABC-type sugar tr 100.0 2.5E-39 5.5E-44 353.6 23.3 211 434-657 8-228 (500)
311 TIGR01257 rim_protein retinal- 100.0 2.4E-39 5.1E-44 402.1 25.9 217 433-664 927-1150(2272)
312 COG4598 HisP ABC-type histidin 100.0 5.6E-40 1.2E-44 308.4 14.3 215 434-664 6-242 (256)
313 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-39 2.9E-44 368.8 20.1 217 434-660 257-489 (500)
314 TIGR00956 3a01205 Pleiotropic 100.0 2.8E-39 6.1E-44 400.6 24.5 212 434-659 759-989 (1394)
315 KOG0060 Long-chain acyl-CoA tr 100.0 3.7E-36 8.1E-41 325.4 43.6 417 217-649 186-641 (659)
316 PRK10762 D-ribose transporter 100.0 3.4E-39 7.4E-44 365.4 19.6 211 434-662 257-483 (501)
317 TIGR01187 potA spermidine/putr 100.0 5E-39 1.1E-43 344.1 19.6 184 468-664 1-191 (325)
318 PRK15064 ABC transporter ATP-b 100.0 1.3E-38 2.9E-43 362.9 24.3 204 434-666 319-528 (530)
319 PRK11288 araG L-arabinose tran 100.0 4.2E-39 9.2E-44 364.6 19.6 212 434-662 257-484 (501)
320 PRK15064 ABC transporter ATP-b 100.0 1.4E-38 3E-43 362.8 23.4 208 435-664 2-243 (530)
321 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.3E-39 7.2E-44 333.8 16.6 203 438-656 4-220 (255)
322 TIGR01257 rim_protein retinal- 100.0 1.5E-38 3.3E-43 394.9 25.6 220 433-666 1936-2162(2272)
323 PRK11819 putative ABC transpor 100.0 2.1E-38 4.5E-43 363.0 24.5 208 434-664 6-251 (556)
324 COG1137 YhbG ABC-type (unclass 100.0 1.7E-39 3.7E-44 310.6 12.1 223 433-665 3-230 (243)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.7E-38 5.9E-43 361.9 24.4 208 434-664 4-249 (552)
326 COG4161 ArtP ABC-type arginine 100.0 8.1E-39 1.8E-43 295.6 16.0 214 434-663 2-230 (242)
327 PRK15177 Vi polysaccharide exp 100.0 1.5E-38 3.3E-43 320.7 18.9 193 452-669 2-198 (213)
328 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.1E-38 6.8E-43 325.1 21.4 196 442-663 1-207 (246)
329 COG4148 ModC ABC-type molybdat 100.0 1.3E-38 2.9E-43 318.0 16.7 200 454-665 15-220 (352)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.4E-38 9.5E-43 298.0 18.7 143 435-651 1-144 (144)
331 COG4525 TauB ABC-type taurine 100.0 3E-38 6.5E-43 300.6 15.8 206 435-657 4-218 (259)
332 PRK10938 putative molybdenum t 100.0 4.7E-38 1E-42 355.3 19.5 209 434-656 260-485 (490)
333 PRK15439 autoinducer 2 ABC tra 100.0 4.8E-38 1E-42 356.6 19.4 212 434-663 268-492 (510)
334 PRK10982 galactose/methyl gala 100.0 2.1E-37 4.5E-42 350.1 22.5 212 434-660 250-477 (491)
335 COG3845 ABC-type uncharacteriz 100.0 3.8E-37 8.3E-42 329.9 22.5 210 434-656 4-222 (501)
336 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.4E-36 3E-41 291.7 19.9 156 436-651 1-157 (157)
337 PLN03140 ABC transporter G fam 100.0 1.8E-36 4E-41 374.5 25.7 214 433-659 866-1106(1470)
338 PRK11819 putative ABC transpor 100.0 3E-36 6.5E-41 345.2 24.2 203 434-664 324-534 (556)
339 cd03222 ABC_RNaseL_inhibitor T 100.0 1.9E-36 4.2E-41 295.6 17.5 157 438-663 4-163 (177)
340 PLN03073 ABC transporter F fam 100.0 5.3E-36 1.1E-40 349.0 23.6 199 434-661 508-712 (718)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8E-36 1.7E-40 341.5 24.0 203 434-664 322-532 (552)
342 COG4604 CeuD ABC-type enteroch 100.0 8.5E-37 1.8E-41 291.3 12.5 217 435-665 2-227 (252)
343 PRK11147 ABC transporter ATPas 100.0 1E-35 2.2E-40 345.6 23.6 201 434-663 319-528 (635)
344 PRK13409 putative ATPase RIL; 100.0 7.5E-36 1.6E-40 341.8 22.1 194 434-657 340-536 (590)
345 PRK10636 putative ABC transpor 100.0 1E-35 2.2E-40 345.1 23.0 199 434-662 312-516 (638)
346 TIGR00956 3a01205 Pleiotropic 100.0 7.9E-36 1.7E-40 370.0 21.2 208 450-662 74-299 (1394)
347 cd03238 ABC_UvrA The excision 100.0 2.7E-35 5.9E-40 287.3 19.1 160 449-656 7-176 (176)
348 COG4167 SapF ABC-type antimicr 100.0 4E-35 8.6E-40 276.4 17.1 216 450-677 26-255 (267)
349 PRK10636 putative ABC transpor 100.0 1.2E-34 2.7E-39 335.9 24.5 208 435-664 2-237 (638)
350 COG4172 ABC-type uncharacteriz 100.0 1.1E-34 2.4E-39 302.2 20.1 227 434-671 6-256 (534)
351 COG1101 PhnK ABC-type uncharac 100.0 5.5E-35 1.2E-39 282.7 15.3 203 449-655 18-230 (263)
352 PRK11147 ABC transporter ATPas 100.0 2.9E-34 6.2E-39 333.4 24.3 207 434-664 3-244 (635)
353 PLN03140 ABC transporter G fam 100.0 4.9E-35 1.1E-39 361.8 18.5 208 450-662 178-426 (1470)
354 COG1119 ModF ABC-type molybden 100.0 3.1E-34 6.7E-39 284.2 19.7 212 433-657 30-256 (257)
355 KOG0061 Transporter, ABC super 100.0 1.2E-33 2.6E-38 324.4 19.1 220 433-663 24-260 (613)
356 PRK13409 putative ATPase RIL; 100.0 6.4E-34 1.4E-38 325.9 15.2 193 438-650 77-287 (590)
357 PLN03073 ABC transporter F fam 100.0 2.4E-33 5.2E-38 326.8 20.2 220 433-663 176-431 (718)
358 PF00005 ABC_tran: ABC transpo 100.0 2.1E-33 4.7E-38 262.8 11.5 134 453-601 1-137 (137)
359 COG0488 Uup ATPase components 100.0 6.9E-32 1.5E-36 302.3 21.7 209 434-665 3-242 (530)
360 COG4136 ABC-type uncharacteriz 100.0 2.8E-32 6E-37 249.6 14.9 200 434-658 2-210 (213)
361 COG4152 ABC-type uncharacteriz 100.0 1.6E-32 3.4E-37 270.1 14.2 215 434-666 2-222 (300)
362 KOG0064 Peroxisomal long-chain 100.0 4.2E-28 9.1E-33 259.5 47.2 406 217-647 221-681 (728)
363 COG0396 sufC Cysteine desulfur 100.0 5.2E-31 1.1E-35 258.4 21.0 217 434-663 3-233 (251)
364 COG1134 TagH ABC-type polysacc 100.0 5.2E-31 1.1E-35 261.7 19.8 193 449-664 39-237 (249)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-31 2.5E-36 273.0 14.3 189 449-656 7-226 (226)
366 COG4674 Uncharacterized ABC-ty 100.0 7.6E-31 1.6E-35 250.3 14.5 215 434-664 5-236 (249)
367 cd03271 ABC_UvrA_II The excisi 100.0 1.3E-30 2.9E-35 269.0 14.4 193 451-658 9-261 (261)
368 COG0488 Uup ATPase components 100.0 1.8E-29 4E-34 282.8 23.6 204 433-665 320-527 (530)
369 COG4107 PhnK ABC-type phosphon 100.0 6.7E-30 1.5E-34 239.3 16.2 225 434-672 6-251 (258)
370 cd03278 ABC_SMC_barmotin Barmo 100.0 5.4E-30 1.2E-34 255.2 14.3 164 454-649 14-190 (197)
371 COG4586 ABC-type uncharacteriz 100.0 3E-30 6.5E-35 257.9 12.0 208 451-672 38-255 (325)
372 COG4133 CcmA ABC-type transpor 100.0 6.6E-29 1.4E-33 236.5 12.9 190 436-641 4-196 (209)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 6.1E-29 1.3E-33 250.8 13.1 192 434-652 5-211 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.1E-28 4.6E-33 251.6 13.2 190 434-648 3-234 (243)
375 COG4778 PhnL ABC-type phosphon 100.0 2.5E-28 5.5E-33 228.0 10.6 202 435-649 5-227 (235)
376 KOG0059 Lipid exporter ABCA1 a 99.9 2.3E-27 4.9E-32 283.6 16.9 222 433-668 563-792 (885)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.1E-27 1.3E-31 242.2 12.8 183 463-651 25-247 (251)
378 PRK00635 excinuclease ABC subu 99.9 7.1E-26 1.5E-30 278.3 21.7 212 434-665 600-908 (1809)
379 PRK00349 uvrA excinuclease ABC 99.9 7.1E-26 1.5E-30 268.2 18.6 95 571-668 829-932 (943)
380 cd03240 ABC_Rad50 The catalyti 99.9 3.4E-26 7.3E-31 229.2 13.3 166 456-650 16-198 (204)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.5E-27 5.3E-32 238.7 4.9 185 434-649 5-204 (212)
382 COG1129 MglA ABC-type sugar tr 99.9 1.8E-25 3.8E-30 245.1 18.9 214 434-657 263-484 (500)
383 COG4138 BtuD ABC-type cobalami 99.9 8.7E-27 1.9E-31 218.7 4.8 208 435-664 4-222 (248)
384 KOG0927 Predicted transporter 99.9 5.5E-26 1.2E-30 245.2 9.7 199 433-658 388-591 (614)
385 KOG0065 Pleiotropic drug resis 99.9 1.7E-25 3.7E-30 262.6 11.8 197 449-658 803-1016(1391)
386 TIGR00630 uvra excinuclease AB 99.9 6.1E-24 1.3E-28 251.4 21.0 91 568-661 822-923 (924)
387 PF00664 ABC_membrane: ABC tra 99.9 2.2E-21 4.9E-26 198.0 36.9 255 135-389 2-275 (275)
388 COG3845 ABC-type uncharacteriz 99.9 1.1E-23 2.4E-28 226.6 19.5 213 434-660 257-489 (501)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.2E-24 2.7E-29 224.4 11.5 183 464-649 23-233 (247)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.6E-22 3.5E-27 201.7 14.0 174 453-651 12-192 (198)
391 KOG0062 ATPase component of AB 99.9 3.8E-22 8.1E-27 214.6 16.2 212 433-677 361-576 (582)
392 KOG0927 Predicted transporter 99.9 6.2E-22 1.3E-26 214.0 16.0 218 432-665 73-311 (614)
393 cd01128 rho_factor Transcripti 99.9 1.6E-22 3.5E-27 207.5 8.6 196 458-675 11-229 (249)
394 KOG0066 eIF2-interacting prote 99.9 1.2E-21 2.6E-26 205.7 14.1 197 434-659 586-787 (807)
395 cd03239 ABC_SMC_head The struc 99.9 3.2E-21 7E-26 189.0 14.3 86 557-649 83-172 (178)
396 COG1245 Predicted ATPase, RNas 99.8 1.4E-20 2.9E-25 199.7 15.3 183 439-649 340-531 (591)
397 COG4170 SapD ABC-type antimicr 99.8 7.5E-21 1.6E-25 183.5 12.1 209 450-669 20-255 (330)
398 KOG0062 ATPase component of AB 99.8 1.6E-21 3.5E-26 209.7 7.7 204 432-665 78-287 (582)
399 KOG0065 Pleiotropic drug resis 99.8 3.5E-20 7.7E-25 218.2 13.5 203 450-662 128-350 (1391)
400 cd03241 ABC_RecN RecN ATPase i 99.8 7.4E-20 1.6E-24 191.9 14.6 77 572-652 170-250 (276)
401 cd03280 ABC_MutS2 MutS2 homolo 99.8 7.4E-20 1.6E-24 182.9 11.6 146 453-656 17-172 (200)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.4E-19 3.1E-24 182.4 13.3 181 454-651 15-211 (213)
403 COG0178 UvrA Excinuclease ATPa 99.8 1.1E-18 2.4E-23 196.5 18.5 116 552-670 788-926 (935)
404 COG2401 ABC-type ATPase fused 99.8 4.3E-19 9.4E-24 186.2 13.4 202 430-653 353-588 (593)
405 PRK00635 excinuclease ABC subu 99.8 3.6E-18 7.9E-23 210.9 20.0 211 452-666 1505-1799(1809)
406 KOG2355 Predicted ABC-type tra 99.8 2.7E-18 5.8E-23 165.6 14.7 207 432-659 11-233 (291)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 4.5E-18 9.7E-23 164.4 13.5 136 457-649 15-155 (162)
408 cd00820 PEPCK_HprK Phosphoenol 99.7 2.1E-18 4.6E-23 153.2 5.9 76 450-533 2-77 (107)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.7 5.6E-18 1.2E-22 171.9 8.8 153 450-657 17-175 (222)
410 cd03242 ABC_RecF RecF is a rec 99.7 1.1E-16 2.4E-21 167.5 16.0 189 453-652 12-269 (270)
411 PRK00349 uvrA excinuclease ABC 99.7 1.3E-16 2.8E-21 189.9 14.7 91 571-664 488-586 (943)
412 TIGR00630 uvra excinuclease AB 99.7 1.4E-16 3.1E-21 189.1 14.6 91 571-664 486-584 (924)
413 COG1245 Predicted ATPase, RNas 99.7 8.4E-17 1.8E-21 171.1 10.4 187 439-648 79-287 (591)
414 cd03283 ABC_MutS-like MutS-lik 99.7 4.3E-17 9.4E-22 162.7 7.1 145 450-647 14-163 (199)
415 cd03243 ABC_MutS_homologs The 99.7 1.1E-16 2.5E-21 160.1 10.2 154 456-661 22-177 (202)
416 TIGR00606 rad50 rad50. This fa 99.7 2.1E-16 4.6E-21 197.2 13.7 137 522-663 1153-1308(1311)
417 TIGR02858 spore_III_AA stage I 99.6 1E-15 2.2E-20 159.1 11.4 142 464-662 112-268 (270)
418 PRK00064 recF recombination pr 99.6 9.3E-14 2E-18 151.1 18.0 75 572-652 273-359 (361)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.5E-14 5.5E-19 143.2 10.5 141 450-642 16-158 (204)
420 cd03284 ABC_MutS1 MutS1 homolo 99.5 2.3E-14 5E-19 144.9 8.9 151 450-661 18-179 (216)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.1E-13 4.5E-18 138.2 11.3 170 454-648 16-212 (220)
422 PRK07721 fliI flagellum-specif 99.5 9.3E-13 2E-17 145.5 17.3 179 450-659 146-339 (438)
423 KOG0066 eIF2-interacting prote 99.5 4.5E-14 9.8E-19 149.1 5.9 194 434-659 264-495 (807)
424 KOG0063 RNAse L inhibitor, ABC 99.4 6.7E-13 1.5E-17 140.5 12.4 200 442-668 343-553 (592)
425 PHA02562 46 endonuclease subun 99.4 1.3E-13 2.8E-18 159.0 7.2 103 544-652 433-555 (562)
426 PTZ00132 GTP-binding nuclear p 99.4 7.1E-13 1.5E-17 133.8 9.9 144 465-619 11-204 (215)
427 TIGR00634 recN DNA repair prot 99.3 3.2E-12 7E-17 147.0 9.5 76 572-651 440-519 (563)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.2E-11 2.5E-16 125.0 11.7 140 451-642 17-161 (213)
429 PRK10869 recombination and rep 99.3 7.7E-12 1.7E-16 142.9 10.2 76 572-651 430-509 (553)
430 TIGR01069 mutS2 MutS2 family p 99.3 1.2E-11 2.5E-16 146.0 11.4 147 433-638 294-448 (771)
431 TIGR00767 rho transcription te 99.3 2.4E-11 5.2E-16 131.1 12.0 83 401-490 102-195 (415)
432 smart00534 MUTSac ATPase domai 99.2 2.1E-11 4.6E-16 120.4 7.4 68 571-643 60-130 (185)
433 COG0178 UvrA Excinuclease ATPa 99.2 7.7E-11 1.7E-15 133.9 12.7 108 555-665 463-579 (935)
434 TIGR02788 VirB11 P-type DNA tr 99.2 4.3E-11 9.3E-16 127.6 9.3 145 456-663 137-281 (308)
435 PRK14079 recF recombination pr 99.2 2.4E-10 5.2E-15 123.9 15.0 76 572-656 263-347 (349)
436 TIGR00611 recf recF protein. A 99.2 3.3E-10 7.2E-15 123.4 14.9 62 572-639 275-345 (365)
437 PRK13695 putative NTPase; Prov 99.2 6.2E-11 1.3E-15 115.8 8.0 92 572-672 78-169 (174)
438 TIGR03238 dnd_assoc_3 dnd syst 99.1 3E-11 6.5E-16 132.3 4.4 67 451-520 20-87 (504)
439 PRK08533 flagellar accessory p 99.1 1.1E-09 2.3E-14 112.0 15.5 159 434-648 7-184 (230)
440 KOG0063 RNAse L inhibitor, ABC 99.1 1.9E-10 4.2E-15 122.1 8.5 170 461-648 98-287 (592)
441 cd03287 ABC_MSH3_euk MutS3 hom 99.1 4.5E-10 9.8E-15 113.9 10.1 141 450-641 18-160 (222)
442 PRK01156 chromosome segregatio 99.1 3.6E-10 7.8E-15 137.3 10.7 77 571-648 800-883 (895)
443 PRK13830 conjugal transfer pro 99.1 2E-09 4.4E-14 128.7 16.5 73 587-663 649-732 (818)
444 PRK03918 chromosome segregatio 99.1 3.3E-10 7.2E-15 137.5 9.8 75 572-649 788-868 (880)
445 PRK10733 hflB ATP-dependent me 99.1 5.2E-11 1.1E-15 138.7 2.6 167 288-488 36-210 (644)
446 TIGR00618 sbcc exonuclease Sbc 99.0 5.7E-10 1.2E-14 137.3 10.0 76 572-650 950-1036(1042)
447 cd01124 KaiC KaiC is a circadi 99.0 2.4E-09 5.2E-14 105.2 12.4 74 572-648 71-163 (187)
448 PRK00409 recombination and DNA 99.0 6E-10 1.3E-14 132.0 9.1 149 452-653 317-468 (782)
449 PRK06793 fliI flagellum-specif 99.0 1.1E-09 2.3E-14 120.5 10.2 168 434-657 130-305 (432)
450 cd01131 PilT Pilus retraction 99.0 7.2E-10 1.6E-14 110.7 7.9 119 465-648 3-122 (198)
451 TIGR02168 SMC_prok_B chromosom 98.9 9.5E-10 2.1E-14 137.1 7.9 72 572-647 1089-1164(1179)
452 cd01120 RecA-like_NTPases RecA 98.9 5.9E-09 1.3E-13 99.1 11.3 129 465-638 1-140 (165)
453 PRK00300 gmk guanylate kinase; 98.9 6.2E-10 1.4E-14 111.4 3.2 78 461-548 3-92 (205)
454 PRK06067 flagellar accessory p 98.9 5.4E-09 1.2E-13 107.1 10.1 146 459-649 21-187 (234)
455 PRK11098 microcin B17 transpor 98.8 3.8E-05 8.3E-10 84.3 37.9 193 215-415 190-395 (409)
456 TIGR02169 SMC_prok_A chromosom 98.8 5.1E-09 1.1E-13 130.7 8.6 74 572-649 1074-1151(1164)
457 PRK06002 fliI flagellum-specif 98.8 1.3E-08 2.9E-13 112.1 10.2 115 432-568 137-258 (450)
458 smart00382 AAA ATPases associa 98.8 1.7E-07 3.8E-12 85.6 16.1 117 462-634 1-125 (148)
459 PRK02224 chromosome segregatio 98.8 9.9E-09 2.1E-13 124.7 9.2 77 572-650 781-869 (880)
460 PRK10246 exonuclease subunit S 98.8 1.4E-08 3.1E-13 124.6 9.3 75 572-649 949-1032(1047)
461 PF13304 AAA_21: AAA domain; P 98.7 9.9E-09 2.2E-13 103.8 5.0 64 572-638 236-302 (303)
462 PF06472 ABC_membrane_2: ABC t 98.7 5.3E-05 1.2E-09 79.9 33.4 124 214-337 127-251 (281)
463 cd03286 ABC_MSH6_euk MutS6 hom 98.7 1.2E-07 2.6E-12 95.9 11.4 140 450-641 17-159 (218)
464 PRK13891 conjugal transfer pro 98.7 5.7E-07 1.2E-11 108.3 19.0 55 583-640 680-735 (852)
465 PF13748 ABC_membrane_3: ABC t 98.7 3.1E-05 6.6E-10 77.9 27.9 157 126-287 4-169 (237)
466 PRK01889 GTPase RsgA; Reviewed 98.7 1.5E-08 3.2E-13 110.2 4.1 133 452-590 184-321 (356)
467 cd01130 VirB11-like_ATPase Typ 98.6 4.2E-08 9.1E-13 97.0 6.5 79 452-533 14-95 (186)
468 PRK12369 putative transporter; 98.6 0.00032 7E-09 75.3 36.4 190 217-414 118-320 (326)
469 PRK07196 fliI flagellum-specif 98.6 2.4E-08 5.3E-13 109.9 4.9 82 450-532 143-234 (434)
470 PRK06995 flhF flagellar biosyn 98.6 5.8E-08 1.2E-12 108.4 7.0 163 454-653 247-430 (484)
471 TIGR02524 dot_icm_DotB Dot/Icm 98.6 5.9E-08 1.3E-12 105.3 6.7 88 461-551 132-234 (358)
472 PRK08149 ATP synthase SpaL; Va 98.5 1.7E-07 3.7E-12 103.2 8.0 100 450-568 139-245 (428)
473 TIGR02655 circ_KaiC circadian 98.5 1.8E-08 3.9E-13 114.1 0.3 156 459-648 17-190 (484)
474 TIGR01026 fliI_yscN ATPase Fli 98.5 4.9E-07 1.1E-11 100.4 11.5 176 450-660 151-345 (440)
475 PLN03210 Resistant to P. syrin 98.5 4.4E-07 9.5E-12 113.2 10.0 148 455-648 199-349 (1153)
476 TIGR01420 pilT_fam pilus retra 98.5 6E-07 1.3E-11 97.3 9.8 121 460-645 119-240 (343)
477 cd01125 repA Hexameric Replica 98.4 4.5E-07 9.8E-12 93.2 8.0 47 586-635 107-159 (239)
478 PRK10078 ribose 1,5-bisphospho 98.4 3.3E-07 7.1E-12 90.6 5.7 55 463-520 2-56 (186)
479 COG3910 Predicted ATPase [Gene 98.4 3.7E-06 8.1E-11 81.3 12.3 164 464-661 38-214 (233)
480 PRK09825 idnK D-gluconate kina 98.4 2.5E-07 5.4E-12 90.7 4.1 66 462-533 2-69 (176)
481 TIGR03263 guanyl_kin guanylate 98.4 2E-07 4.3E-12 91.2 3.2 78 463-550 1-90 (180)
482 TIGR03881 KaiC_arch_4 KaiC dom 98.3 1.8E-06 3.9E-11 88.0 9.3 57 459-519 16-76 (229)
483 PF09818 ABC_ATPase: Predicted 98.3 1.1E-05 2.4E-10 87.8 15.7 173 440-653 227-417 (448)
484 cd00071 GMPK Guanosine monopho 98.3 2.2E-07 4.7E-12 87.3 2.3 63 466-534 2-77 (137)
485 PLN02796 D-glycerate 3-kinase 98.3 2.5E-07 5.4E-12 98.8 2.5 61 451-511 80-151 (347)
486 cd02023 UMPK Uridine monophosp 98.3 7.1E-07 1.5E-11 88.9 4.9 107 465-605 1-113 (198)
487 PRK13898 type IV secretion sys 98.3 2.3E-05 4.9E-10 94.4 18.5 188 455-649 438-709 (800)
488 TIGR02322 phosphon_PhnN phosph 98.3 1.5E-06 3.3E-11 85.0 6.8 62 463-525 1-78 (179)
489 TIGR02903 spore_lon_C ATP-depe 98.3 2.1E-06 4.5E-11 99.8 9.0 109 463-617 175-291 (615)
490 PRK15494 era GTPase Era; Provi 98.3 5.3E-07 1.2E-11 97.5 3.9 56 429-486 13-75 (339)
491 PRK06315 type III secretion sy 98.2 9.3E-07 2E-11 97.8 4.7 101 451-553 153-276 (442)
492 cd01123 Rad51_DMC1_radA Rad51_ 98.2 2.7E-06 5.9E-11 86.9 7.4 137 459-635 15-170 (235)
493 TIGR02680 conserved hypothetic 98.2 2E-06 4.3E-11 108.2 7.4 59 571-635 1246-1316(1353)
494 PRK03846 adenylylsulfate kinas 98.2 1.2E-06 2.6E-11 87.4 3.8 55 461-519 22-77 (198)
495 TIGR00235 udk uridine kinase. 98.2 7.5E-07 1.6E-11 89.5 2.3 43 461-524 4-46 (207)
496 TIGR03497 FliI_clade2 flagella 98.2 4.3E-06 9.2E-11 92.3 8.3 99 450-568 125-231 (413)
497 PRK05480 uridine/cytidine kina 98.1 3.4E-06 7.3E-11 84.8 6.5 44 461-525 4-47 (209)
498 cd01136 ATPase_flagellum-secre 98.1 4.2E-06 9.1E-11 89.4 7.1 105 450-569 57-164 (326)
499 COG0419 SbcC ATPase involved i 98.1 6.5E-06 1.4E-10 100.4 9.6 77 572-651 815-899 (908)
500 cd00009 AAA The AAA+ (ATPases 98.1 1.6E-05 3.5E-10 73.2 9.8 58 578-636 72-131 (151)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-128 Score=1073.03 Aligned_cols=554 Identities=41% Similarity=0.667 Sum_probs=517.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (680)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~-~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 195 (680)
..++|++.|.+++++++..++.+++++++..+.+|++++.+++.... .+ ...+......+.++.++.+++.+++.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998875433 11 23344555666677778888888888777
Q ss_pred HHHHHh---------------cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005740 196 SIANIV---------------LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 260 (680)
Q Consensus 196 ~~~~~~---------------l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~l 260 (680)
..+..+ .+++|||.+++|||+||+++|+..+.+.++..++..+++.++.++++++|+++||+|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 654221 28999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 261 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 340 (680)
Q Consensus 261 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (680)
+.++.+|+++++..+|+++.++..++.|++.++.++.++|.+++|||||+|++|+.|.+||.+..++..+...|.+..++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 005740 341 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 420 (680)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 420 (680)
.+....++..+...+.++++|++++..|+||.|++++|++|..++..++..++..+.+++++.+|++|+||++|++|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccccccc-cccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe
Q 005740 421 FLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 499 (680)
Q Consensus 421 ~~~~~~~~~-~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 499 (680)
.. +...| ...|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||+|++|+|++||+
T Consensus 453 ~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 453 LT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred CC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 43 43333 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHH
Q 005740 500 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 577 (680)
Q Consensus 500 di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQ 577 (680)
||++++..+||++||+|.|||.||++||+|||+||. ++++||||++||++|++||||.++|+||||.|||+ +|||||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 999999999999999999999999999999999996 59999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
||||||||||+|||+||||||||||||+|+|..|+++|++.. ++||||+||||||||++||+|+|+|+|+|+|.|+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~----~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM----QGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh----cCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 999999999999999999999999999999999999999984 5799999999999999999999999999999999
Q ss_pred hHHHhhcC-cHHHHHHHHhhhc
Q 005740 658 HAELLHKG-RLYAKLVKRQTES 678 (680)
Q Consensus 658 h~eLl~~~-g~Y~~L~~~q~~~ 678 (680)
|+|||++. |.|++|+++|...
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhCcccHHHHHHHHhccc
Confidence 99999986 8999999999754
No 2
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.8e-112 Score=986.61 Aligned_cols=554 Identities=35% Similarity=0.500 Sum_probs=483.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA--QREE--AMVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~--~~~~--~~~~~~~~~~l~~l~~~~~i~~~~~~~~ 194 (680)
.+.+++++.+|+|+.++++++++++......+..++++..+-.. ...+ ......+..+++++.++.++..+++.++
T Consensus 651 s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999998888777666554333333344433111 1111 0011113334455666677777788888
Q ss_pred HHHHHHh---------------cchhccccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005740 195 FSIANIV---------------LDVYFFDTE-AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 258 (680)
Q Consensus 195 ~~~~~~~---------------l~~~ff~~~-~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L 258 (680)
+.+.... .|++|||+. ++|.|.+|+.+|...++..++..+..+++++..++.++++.|+++|+|
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~l 810 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRL 810 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764322 299999963 349999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 259 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 338 (680)
Q Consensus 259 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 338 (680)
++++++++|++++....+.+..+...++.++..++.+..+.|+++|+|||++|++|+++.+.|.+.+++..+...|...+
T Consensus 811 alv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i 890 (1228)
T KOG0055|consen 811 ALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899888888989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005740 339 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 418 (680)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 418 (680)
.++...+.+.+..+...+.+|+|++++.+|.+++.+++-.+..+..-...+.......+++.++..|+.++++++|++|+
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~ 970 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPT 970 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCC
Confidence 98888888888888889999999999999999999876544443333344455556778999999999999999999986
Q ss_pred Ccccc-cccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 419 NQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 419 ~~~~~-~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
.+.+. .+...+..+|+|+|+||+|+||+||+.+||+|+||+|++|+++||||||||||||++.||.|||||++|+|+||
T Consensus 971 i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ID 1050 (1228)
T KOG0055|consen 971 IDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKID 1050 (1228)
T ss_pred CCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 54332 33334567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCCh
Q 005740 498 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 575 (680)
Q Consensus 498 G~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSG 575 (680)
|+||+++++++||++||+|+|||.||++||||||+||. ++++++||++|||.|++|+||.+||+||||.|||+ +|||
T Consensus 1051 g~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1051 GVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred CcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 99999999999999999999999999999999999994 46999999999999999999999999999999994 9999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEe
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~ 655 (680)
|||||||||||++|||+||+|||||||||+|+|+.||+||++.+ .|||+|+||||||||++||.|+|++||+|+|+
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~----~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM----EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh----cCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999994 57999999999999999999999999999999
Q ss_pred cChHHHhhcCcHHHHHHHHhhh
Q 005740 656 GNHAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 656 Gth~eLl~~~g~Y~~L~~~q~~ 677 (680)
|||+||++++|.|++|++.|..
T Consensus 1206 GtH~~L~~~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1206 GTHDELLAKRGIYFRLVQLQSS 1227 (1228)
T ss_pred ccHHHHHhCCCchHHHhhhccC
Confidence 9999999999999999998853
No 3
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.3e-108 Score=941.78 Aligned_cols=551 Identities=31% Similarity=0.465 Sum_probs=498.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~ 197 (680)
.+.|+++.+.++++.+.-.++.+++..+++++.|++...++|..... +...+......++++++...++..+|.+++..
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~ 220 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAH 220 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889999999888889999999999999998888765322 22223322333444555666777777776654
Q ss_pred HHH---------------hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005740 198 ANI---------------VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262 (680)
Q Consensus 198 ~~~---------------~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~ 262 (680)
... .+|++||+++++||+++|+. |.++++++++..+...+.+++++++.+++|+++||+|++++
T Consensus 221 ~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 221 LGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 24999999999999999995 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 342 (680)
Q Consensus 263 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (680)
++.+|+++++..++.+..++..++..+..++.++.+.|++.|+++||+.+.|++...+|++...+..+.+.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 005740 343 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 422 (680)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 422 (680)
.....++..+..++++|+|+++|+.|++|+|++++|.++...+..|+..+.+.+.++++...+.+|+.++++.|+|.+..
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 77778888888899999999999999999999999999999999999999999999999999999999999999885432
Q ss_pred ccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 005740 423 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 423 ~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 502 (680)
......+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|||+|+|+|++|+|++||+|+.
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 2223456678999999999999864 357999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 005740 503 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 580 (680)
Q Consensus 503 ~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQR 580 (680)
++++++||++||||+||++||+|||+|||++| +|++++||+++||+.|++||||.++|+||||.|||+ +||||||||
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALG-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 579999999999999999999999999999999994 999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~e 660 (680)
||||||+++||+||||||||||||++||+.|.++|.++. .|||+|+||||++|+++||||+|||+|||+|+|||+|
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~----~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL----QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh----cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 999999999999999999999999999999999999984 5799999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHHHhh
Q 005740 661 LLHKGRLYAKLVKRQT 676 (680)
Q Consensus 661 Ll~~~g~Y~~L~~~q~ 676 (680)
|++.+|.|+++|+.|.
T Consensus 694 ll~~~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQGGLYARLYQQQE 709 (709)
T ss_pred HHHhcChHHHHHhccC
Confidence 9999999999998873
No 4
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.7e-102 Score=914.33 Aligned_cols=615 Identities=35% Similarity=0.506 Sum_probs=518.0
Q ss_pred ceeccccccccccccCCCCCCCCccccchhhhhHHHHHHhhcccCCCcccccCCCcccCCCC-CCccchHHHHHHHHHHh
Q 005740 49 KRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPT-AKPITVWIALSRMWNLI 127 (680)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 127 (680)
+|+..|.|.+......... +.......++.|.+.+++|.++....-.||.+.+..+.+... +++...+..++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (711)
T TIGR00958 78 LCLATPSLSSLRALAFWEA-LDPAVRVALGLWSWFVWSYGAALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGLS 156 (711)
T ss_pred HHHHHHHHHHHHHHHccCC-CccccccccccHHHHHHHHHHHHHHHHHHHhhCCccccccccccccchhhhHHHHHHHHH
Confidence 8999999887654432211 112333578889999999999988777888886652221000 11223345678899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005740 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANI------ 200 (680)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~~------ 200 (680)
+++++.+..++++.++++++.++.|++++.+++.... .+...+.....+++++.++..++.+++.+++.....
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 236 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRI 236 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988875431 122222222233333344445555555443332111
Q ss_pred ---------hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005740 201 ---------VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 271 (680)
Q Consensus 201 ---------~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~ 271 (680)
..|++||++.++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|++++++++.+|+..+
T Consensus 237 r~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~ 316 (711)
T TIGR00958 237 REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFL 316 (711)
T ss_pred HHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 13899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 272 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYR 351 (680)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (680)
+...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+........+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (711)
T TIGR00958 317 AEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGM 396 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889888888888999999999999999999999999999999999999999999988887776655555444445555
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccc
Q 005740 352 STQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL 431 (680)
Q Consensus 352 ~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 431 (680)
+..++++++|++++.+|++|+|++++|+.|...+..|+..++..+.+++++..+.+|++++++.+++.+.. ....+.+.
T Consensus 397 ~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~~~ 475 (711)
T TIGR00958 397 LIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-GTLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCCCCC
Confidence 56677788999999999999999999999999999999999999999999999999999999987654321 11112234
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 57899999999998755568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 589 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~ 589 (680)
+|+||+|||+||+|||||||+||+ ++++|||+++|++.|++++||+++|+||||.+||+ +||||||||||||||+++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999995 68999999999999999999999999999999993 999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHH
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 669 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~ 669 (680)
||+|||||||||+||++||+.|++ ... .++||+|+||||+++++.||+|+|||+|+|+|+|+|+||++++|.|+
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~-~~~-----~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE-SRS-----RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH-hhc-----cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999998 222 35799999999999999999999999999999999999999999999
Q ss_pred HHH
Q 005740 670 KLV 672 (680)
Q Consensus 670 ~L~ 672 (680)
+|+
T Consensus 709 ~lv 711 (711)
T TIGR00958 709 HLV 711 (711)
T ss_pred hcC
Confidence 873
No 5
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.2e-102 Score=889.25 Aligned_cols=546 Identities=37% Similarity=0.601 Sum_probs=472.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005740 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA- 198 (680)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~- 198 (680)
+++++++.+ ++ .+.+++++.++..++.+..|.++...++... .+.........+++++.++.+++.++..+.....
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 77 7788888888999999999998887775543 1111111122222222223333333322221111
Q ss_pred --------------HHhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005740 199 --------------NIVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 264 (680)
Q Consensus 199 --------------~~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~ 264 (680)
-..+|+++|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+++++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 160 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 012489999999999999999999999999998886666667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 265 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 344 (680)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (680)
..|++.+....+.++.++..+..++..+++++.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.....+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887778888999999999999999999999999999999999999999999888888776666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q 005740 345 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 424 (680)
Q Consensus 345 ~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 424 (680)
....+......+++++|++.+..|.+++|.+++|+.|...+..|+..++..+..++++..+.+|++++++.+++..+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 66666677778888999999999999999999999999999999999999999999999999999999998775432221
Q ss_pred ccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 425 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 425 ~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
. .....++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||+++||+|||+|++|+|++||+||+++
T Consensus 321 ~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 321 P--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred C--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence 1 2234578999999999984 35899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 582 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIa 582 (680)
+.++||++||+||||++||+|||+|||+||+ +++||||+++||+.|++||||+++|+||||.|||+ +||||||||||
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 9999999999999999999999999999995 68999999999999999999999999999999984 99999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHh
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||++|||||||||||||+||++||+.|+++++++. ++||+|+||||++|+++||+|+|||+|+|+|+|+|+||+
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~----~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLL----KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh----cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999874 468999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHhhh
Q 005740 663 HKGRLYAKLVKRQTE 677 (680)
Q Consensus 663 ~~~g~Y~~L~~~q~~ 677 (680)
+++|.|++||+.|..
T Consensus 552 ~~~g~y~~l~~~~~~ 566 (567)
T COG1132 552 AKGGLYARLYQAQGG 566 (567)
T ss_pred HcCCHHHHHHHHhhc
Confidence 999999999999864
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.1e-101 Score=888.50 Aligned_cols=550 Identities=22% Similarity=0.296 Sum_probs=462.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ--REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~--~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~ 196 (680)
.+++++++++++|+.+++++++.++..++.+..|++++..++... ..+...+......++++.++..++.+++.++..
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999988876432 111111111122222333334444444443322
Q ss_pred HHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005740 197 IAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261 (680)
Q Consensus 197 ~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv 261 (680)
... ..+|.++|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12389999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 341 (680)
Q Consensus 262 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (680)
+++++|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888889999999999999999999999999999999999999988887776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 342 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQL 412 (680)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l---------~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~ 412 (680)
.......+..+..+++++++++.+ .|.+|+|++ ++++.+...+..|+..++..+..++++..+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444343334445555544 488888764 2233566677899999999999999999999999999
Q ss_pred hhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC
Q 005740 413 IDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 491 (680)
Q Consensus 413 l~~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~ 491 (680)
++.+++... ......+ ...++|+|+||+|.|++ +++||+|+||+|+|||++|||||||||||||++||+|+| |++
T Consensus 328 l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccC-CCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 987654221 1111111 12457999999998864 357999999999999999999999999999999999999 999
Q ss_pred ceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC
Q 005740 492 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 571 (680)
Q Consensus 492 G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~ 571 (680)
|+|++||+|+++++.+++|++|+||||||+||+|||+|||+||+ ++++|||+++||+.|+++|||++||+||||.|||+
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999994 68999999999999999999999999999999994
Q ss_pred --CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 572 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 572 --~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
+||||||||||||||+++||+||||||||||||++||++|+++|+++. ++||+|+||||++++++||+|+|||+
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999884 57999999999999999999999999
Q ss_pred CEEEEecChHHHhhcCcHHHHHHHHhhhc
Q 005740 650 GRIIEVGNHAELLHKGRLYAKLVKRQTES 678 (680)
Q Consensus 650 G~Ive~Gth~eLl~~~g~Y~~L~~~q~~~ 678 (680)
|+|+|+|+|+||++++|.|+++++.|.++
T Consensus 559 G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 559 GQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred CeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 99999999999999999999999999865
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-103 Score=915.67 Aligned_cols=469 Identities=39% Similarity=0.602 Sum_probs=433.8
Q ss_pred chhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR 282 (680)
Q Consensus 203 ~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~~ 282 (680)
+++|||.+.+|++.+|+++|++.+++.+++.+..+++.+.++++++++.|++.|+|+++.+...|++++....+.+...+
T Consensus 118 di~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~ 197 (1228)
T KOG0055|consen 118 DIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSK 197 (1228)
T ss_pred ccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 283 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 362 (680)
Q Consensus 283 ~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 362 (680)
...+.++.+++..+.++|+++++|||.+|+.|+.+.+||.+.++...+...+...+.++......++......+.+|+|+
T Consensus 198 ~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~ 277 (1228)
T KOG0055|consen 198 LTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGS 277 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888777777777777888999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc-cccccccccccEEEEEEE
Q 005740 363 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNIS 441 (680)
Q Consensus 363 ~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVs 441 (680)
.++..+..++|+++..+..+..-...+......+..+..+.+|+.+|+++++..|+.+... ++......+|+|+|+||+
T Consensus 278 ~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~ 357 (1228)
T KOG0055|consen 278 TLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVC 357 (1228)
T ss_pred HHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEE
Confidence 9999999999987654433333333344444567788899999999999999988754322 222334568999999999
Q ss_pred EEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc
Q 005740 442 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 521 (680)
Q Consensus 442 F~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~ 521 (680)
|+||+||+.+||+|+||+|++||+|||||||||||||+++||+|||+|++|+|+|||.|+++++.++||++||+|+|||.
T Consensus 358 FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv 437 (1228)
T KOG0055|consen 358 FSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV 437 (1228)
T ss_pred ecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeCC
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 599 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDEa 599 (680)
||++||+|||+|| +||+|++|+++|||+|++||||.+||+||||.|||+ +|||||||||||||||+|||+||+||||
T Consensus 438 lF~~tI~eNI~~G-~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEa 516 (1228)
T KOG0055|consen 438 LFATTIRENIRYG-KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEA 516 (1228)
T ss_pred hhcccHHHHHhcC-CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCc
Confidence 9999999999999 579999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhh
Q 005740 600 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 600 TSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 676 (680)
|||||+++|+.||++|++. ++|||+|+||||||||++||+|+||++|+|||.|+|+||++.+|.|.+|++.|.
T Consensus 517 TSaLD~~se~~Vq~ALd~~----~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 517 TSALDAESERVVQEALDKA----SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred ccccCHHHHHHHHHHHHHh----hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 9999999999999999998 468999999999999999999999999999999999999999999999999885
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.1e-98 Score=925.36 Aligned_cols=551 Identities=28% Similarity=0.369 Sum_probs=454.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~--~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~ 196 (680)
.+++++++++++++.+++++++++++.++..+.|++++..++...... .........++++++++.+++.+++.++..
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888888888888889998888765321111 001111222333344445555566555544
Q ss_pred HHHH---------------hcchhcccc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005740 197 IANI---------------VLDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 259 (680)
Q Consensus 197 ~~~~---------------~l~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~ 259 (680)
.... ..|++||++ +++|++++|+++|++.++..+...+..++..++.++++++++++++|.++
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~ 971 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVA 971 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 139999986 78999999999999999999999899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH
Q 005740 260 LSALLICSFLSIIVSVYGQYQKRAS-VL-----------------TQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 321 (680)
Q Consensus 260 lv~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~ 321 (680)
++++++++ ++...+.++.+... ++ .++..++.+..+.|+++|+++||+|+.|+++.++|
T Consensus 972 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265 972 AVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence 87654433 33333333322211 11 12335677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 322 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 401 (680)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~ 401 (680)
.+..++..+...+.....+.+..+...+..+..++++|+|++++.+|.+|+|++++++.+......++..++..+.++++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265 1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877776666666666666666778899999999999999999999887765555567778888899999
Q ss_pred HHHHHHHHHHHhhcCCCCcccc-cccc---cccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHH
Q 005740 402 SIGATEKVFQLIDLLPSNQFLS-EGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 477 (680)
Q Consensus 402 ~~~a~~ri~~~l~~~~~~~~~~-~~~~---~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKS 477 (680)
+..+++|++++++.+++.+..+ .+.. .+...|.|+|+||+|+||++++.+||+|+||+|+||+++|||||||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999876432111 1111 12345789999999999976666899999999999999999999999999
Q ss_pred HHHHHHhcCCCC------------------------------------------------------CCceEEECCeeCCC
Q 005740 478 TFVNLLLRLYEP------------------------------------------------------SDGQIYIDGFPLTD 503 (680)
Q Consensus 478 TL~~LL~r~y~p------------------------------------------------------~~G~I~idG~di~~ 503 (680)
||++||+|||+| ++|+|++||+|+++
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~ 1288 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh
Confidence 999999999999 69999999999999
Q ss_pred CCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 005740 504 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 581 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRI 581 (680)
++.++||++||||+|||+||+|||||||+||. +++++|||++||+.|++||||.+||+||||.|||+ +|||||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999994 68999999999999999999999999999999994 9999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC----CEEE-Eec
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRII-EVG 656 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~----G~Iv-e~G 656 (680)
||||||+|||+||||||||||||++||+.|+++|+++.. .++||+|+||||++++++||+|+||++ |+++ |+|
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 999999999999999999999999999999999998741 147999999999999999999999999 9955 999
Q ss_pred ChHHHhh-cCcHHHHHHHHh
Q 005740 657 NHAELLH-KGRLYAKLVKRQ 675 (680)
Q Consensus 657 th~eLl~-~~g~Y~~L~~~q 675 (680)
||+||++ ++|.|++||+.|
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 9999998 599999999876
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.9e-97 Score=868.09 Aligned_cols=543 Identities=27% Similarity=0.359 Sum_probs=468.0
Q ss_pred HHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 121 SRMWNL-IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (680)
Q Consensus 121 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~ 198 (680)
++++++ ++++|+.+...++++++..++.++.|++++.+++..... +...+......++++.++..++.+++.++....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 124 RDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 577888888888889999999999999998887654321 111122112222223333445555554433221
Q ss_pred H---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005740 199 N---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 263 (680)
Q Consensus 199 ~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l 263 (680)
. ..+|+.||+++++|++++|++ |++.+++++...+...+.+.+..++.++++++++|+++++++
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123999999999999999997 799999998887777777888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 264 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 343 (680)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (680)
+++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+++.++|.+..++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888888888888899999999999999999999999999999999999999988888777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 005740 344 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 423 (680)
Q Consensus 344 ~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 423 (680)
.....+..+..++++++|++++.+|++|+|++++|..+...+..|+..+...+..++++..+.+|+.++++.+++...
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-- 440 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-- 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--
Confidence 555566666777888999999999999999999999999999999999999999999999999999999987665321
Q ss_pred cccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 005740 424 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 503 (680)
Q Consensus 424 ~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 503 (680)
.........+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 441 ~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 441 AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 111112335789999999999753 4679999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 005740 504 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 581 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRI 581 (680)
++.+++|++|||||||++||+|||+|||++| ++ +++||+++|++.|+++|+|+++|+||||.+||+ +|||||||||
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~-~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGG-AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcC-CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999 45 999999999999999999999999999999983 9999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
|||||+++||+|||||||||+||++||++|.++|+++ ++|+|+||||+++++.||+|+|||+|+|+|+|+|+||
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~------~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh------CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999875 4799999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHh
Q 005740 662 LHKGRLYAKLVKRQ 675 (680)
Q Consensus 662 l~~~g~Y~~L~~~q 675 (680)
++++|.|++|++.|
T Consensus 672 l~~~~~y~~l~~~q 685 (686)
T TIGR03797 672 MAREGLFAQLARRQ 685 (686)
T ss_pred HhCCcHHHHHHHhc
Confidence 99999999999876
No 10
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.2e-97 Score=871.64 Aligned_cols=547 Identities=26% Similarity=0.368 Sum_probs=471.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~-~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~ 197 (680)
.+++++++++++++.+...+++.++..++.++.|++++.+++...... ...+......++++.++..++.+++.++...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999888888888999999999999988876542211 1111111112222333344445555443322
Q ss_pred HH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005740 198 AN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262 (680)
Q Consensus 198 ~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~ 262 (680)
.. ..+|+.||+++++|++++|++ |.+.+++++...+...+.+++..++.++++++++|++++++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 301 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 123999999999999999997 89999999888877778888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 342 (680)
Q Consensus 263 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (680)
++.+|+++++...+.++.++..++.++..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+........
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888889999999999999999999999999999999999999999998888887776655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 005740 343 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 422 (680)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 422 (680)
......+..+..++++++|++++.+|++|+|++++|..|...+..|+..+...+..++++..+.+|+.++++.++|.+..
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 54445555566677889999999999999999999999999999999999999999999999999999999877654322
Q ss_pred ccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 005740 423 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 423 ~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 502 (680)
......+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 462 ~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 462 KKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 111112334578999999999974 357999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 005740 503 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 580 (680)
Q Consensus 503 ~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQR 580 (680)
+++.+++|++||||||||+||+|||+|||++|++++++|||+++||+.|+++|||+++|+||||.|||+ +||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 999999999999999999999999999999994468999999999999999999999999999999983 999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~e 660 (680)
|+||||+++||+|||||||||+||++||+.|+++|+++ +++|+|+||||+++++.||+|+|||+|+|+|.|+|+|
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-----~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-----cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999875 3689999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHH
Q 005740 661 LLHKGRLYAKLVK 673 (680)
Q Consensus 661 Ll~~~g~Y~~L~~ 673 (680)
|++++|.|++||+
T Consensus 695 L~~~~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDRNGFYASLIH 707 (708)
T ss_pred HHhcCCcHHHHhh
Confidence 9999999999985
No 11
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.6e-96 Score=840.94 Aligned_cols=546 Identities=24% Similarity=0.317 Sum_probs=462.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhH--HHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 005740 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEA--MVFHK--SSRFLVLLCVTSGIFSGLRSGC 194 (680)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~-~~~~--~~~~~--~~~~l~~l~~~~~i~~~~~~~~ 194 (680)
+++++++++++++.+++++++.++++++.+..|.+++..++... .... ..+.. ....+.++.++..++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888999999999999999999999999998888776431 1110 00100 0111222233344444444333
Q ss_pred HHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005740 195 FSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 259 (680)
Q Consensus 195 ~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~ 259 (680)
..... ..+|..+|++.++|++++|+++|++.++.++...+..++.+++.+++++++|+++||+++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110 113899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 260 LSALLICSFLSII-VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 338 (680)
Q Consensus 260 lv~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 338 (680)
+++++++|+++++ ..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888876553 466667778888888889999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 005740 339 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 417 (680)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l-~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 417 (680)
.+........+..+..++++++|+++ ..|.+++|.+++|+.|.... ..|+..+...+..++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666666666556666778889888 48999999999988876443 45777788888899999999999999999876
Q ss_pred CCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 418 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 418 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
+.+.+... ......+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTTS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCccc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 53221111 112235689999999999853 3579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCCh
Q 005740 498 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 575 (680)
Q Consensus 498 G~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSG 575 (680)
|+|+++++.+++|++|+||||||+||++||+|||++|+ ++++||++++|++.+++++||++ |+||||.|||+ +|||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999995 68999999999999999999999 99999999994 8999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEe
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~ 655 (680)
|||||||||||+++||+|||||||||+||++||+.|+++|++.. +++|+|+||||+++++.||+|++|++|+|+|.
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~----~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA----QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999873 47999999999999999999999999999999
Q ss_pred cChHHHhhcCcHHHHHHHH
Q 005740 656 GNHAELLHKGRLYAKLVKR 674 (680)
Q Consensus 656 Gth~eLl~~~g~Y~~L~~~ 674 (680)
|+|+||++++|.|+++|+.
T Consensus 555 g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 555 GTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999974
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.8e-96 Score=864.16 Aligned_cols=545 Identities=25% Similarity=0.370 Sum_probs=470.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~ 197 (680)
.+++++++++++++.+...++++++..++.++.|++++..++..... +...+......++++.++..++.+++.++...
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888889998888888888899999999999998887653221 11111111112222233344455555443322
Q ss_pred HH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005740 198 AN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262 (680)
Q Consensus 198 ~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~ 262 (680)
.. ..+|++||+++++|++++|+++| +.+++++...+..++.+++.+++.++++++++|++++++
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12399999999999999999988 789999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 342 (680)
Q Consensus 263 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (680)
++.+|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|.+...+..+...+........
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888888888999999999999999999999999999999999988888887776666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 005740 343 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 422 (680)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 422 (680)
......+..+..++++++|++++.+|++|+|++++|..+...+..|+..+...+..++++..+.+|+.++++.+++....
T Consensus 380 ~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 55556666667778889999999999999999999999999999999999999999999999999999999887653321
Q ss_pred c----c-cccc-ccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE
Q 005740 423 S----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 496 (680)
Q Consensus 423 ~----~-~~~~-~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 496 (680)
. . .... +...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1 0 0111 2335789999999999853 467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCC
Q 005740 497 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 574 (680)
Q Consensus 497 dG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LS 574 (680)
||+|+++++.+++|++|||||||++||+|||+|||++++ +++++|++++||+.++++|||.++|+||||.+||+ +||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 999999999999999999999999999999999999994 68999999999999999999999999999999983 999
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive 654 (680)
||||||||||||+++||+||||||||||||++||++|.+.|++. ++|+|+||||+++++.||||+|||+|+|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~------~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR------GCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhc------CCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999762 699999999999999999999999999999
Q ss_pred ecChHHHhhcCcHHHHHH
Q 005740 655 VGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 655 ~Gth~eLl~~~g~Y~~L~ 672 (680)
.|+|+||++++|.|++|+
T Consensus 692 ~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAVGGAYARLI 709 (710)
T ss_pred ecCHHHHHHcCCcHHHHh
Confidence 999999999999999987
No 13
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-100 Score=799.23 Aligned_cols=467 Identities=29% Similarity=0.426 Sum_probs=405.9
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLL-TLSWPLTLSALLICSFLSIIVSVYGQYQ 280 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~-~~s~~L~lv~l~~~~l~~~~~~~~~~~~ 280 (680)
+++.|+-++++|+++.-++...+.+. ++...+.++...++-+.+++++.+ ..||+.+|+++++..+++.+........
T Consensus 305 LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWR 383 (790)
T KOG0056|consen 305 LSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWR 383 (790)
T ss_pred hceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhh
Confidence 48899999999999987766555554 444445555555555555555544 4799999999888777766654444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 281 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLL 360 (680)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (680)
.+..++...+..+..+...+++-|.+|||-||+|++|.+||++...++.+...|......+.+...+.+..++.++.-++
T Consensus 384 Tk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll 463 (790)
T KOG0056|consen 384 TKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLL 463 (790)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhe
Confidence 45555555555555666789999999999999999999999999999999888876555555555555544444444455
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccEEEEEE
Q 005740 361 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNI 440 (680)
Q Consensus 361 g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nV 440 (680)
.+|.|..+.+++|+++.|.+|+.++..|+..++..+..++++..-.|++++++++++|..+.++..+....+|.|+|+||
T Consensus 464 ~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnv 543 (790)
T KOG0056|consen 464 CAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNV 543 (790)
T ss_pred eeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEe
Confidence 56778889999999999999999999999999999999999999999999999999987765555555566899999999
Q ss_pred EEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCC
Q 005740 441 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 520 (680)
Q Consensus 441 sF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~ 520 (680)
+|+|+. ++|||+||||+++||+++|+|||||+||||+++||.||||.++|.|.|||+||+++...+||++||+||||.
T Consensus 544 tF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 544 TFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT 621 (790)
T ss_pred EEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence 999974 579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeC
Q 005740 521 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 598 (680)
Q Consensus 521 ~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDE 598 (680)
.||++||.+||+|| ++++++||+++|||+|++||-|.++|+||+|.|||+ +||||||||+||||++||+|.|++|||
T Consensus 622 vLFNdTI~yNIrya-k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE 700 (790)
T KOG0056|consen 622 VLFNDTILYNIRYA-KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700 (790)
T ss_pred eeecceeeeheeec-CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc
Confidence 99999999999999 579999999999999999999999999999999995 999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc-CcHHHHHHHHhh
Q 005740 599 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQT 676 (680)
Q Consensus 599 aTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~-~g~Y~~L~~~q~ 676 (680)
||||||..||+.||.+|.++. .+||.|+||||||||-+||.|+|++||+|+|+|+||||+++ +|.|++||+.|+
T Consensus 701 ATSALDT~tER~IQaaL~rlc----a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 701 ATSALDTNTERAIQAALARLC----ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred hhhhcCCccHHHHHHHHHHHh----cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 999999999999999999994 57999999999999999999999999999999999999998 899999998775
No 14
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.1e-95 Score=837.75 Aligned_cols=555 Identities=32% Similarity=0.480 Sum_probs=473.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGC 194 (680)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~-~~~~~~~~l~~l~~~~~i~~~~~~~~ 194 (680)
.|+.+++++++++++++.+++.+++.++.+++..+.|+++...++........ .+......++++.++..++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (582)
T PRK11176 9 TWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYC 88 (582)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999888888888888878778888877766543221111 11111111112223333333333322
Q ss_pred HHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005740 195 FSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 259 (680)
Q Consensus 195 ~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~ 259 (680)
..... ...|.++|++.++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 89 ISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21110 123899999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 260 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 339 (680)
Q Consensus 260 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (680)
+++++++|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888888888889999999999999999999999999999999999999999888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 005740 340 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN 419 (680)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 419 (680)
.........+..+..++++++|++.+..|.+|+|+++++..+...+..|+..+...+..++++..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 65555555555566667788999999999999999999999999999999999999999999999999999999876542
Q ss_pred cccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe
Q 005740 420 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 499 (680)
Q Consensus 420 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 499 (680)
+. +....+...++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 329 ~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 329 DE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 21 111122234679999999999863 457999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHH
Q 005740 500 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 577 (680)
Q Consensus 500 di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQ 577 (680)
|+++++.+++|++|+|||||++||+|||+|||++|++++++|||+++|++.+++++|+++||+||||.+||+ +|||||
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq 485 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence 999999999999999999999999999999999995434899999999999999999999999999999993 899999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
||||+||||++++|+||||||||||||++||+.|.++|.++. +++|+|+||||+++++.||+|++||+|+|+|+|+
T Consensus 486 rQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999874 4699999999999999999999999999999999
Q ss_pred hHHHhhcCcHHHHHHHHhhh
Q 005740 658 HAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 658 h~eLl~~~g~Y~~L~~~q~~ 677 (680)
|+||++++|.|+++++.|..
T Consensus 562 ~~~l~~~~~~y~~l~~~~~~ 581 (582)
T PRK11176 562 HAELLAQNGVYAQLHKMQFG 581 (582)
T ss_pred HHHHHhCCChHHHHHHHHhc
Confidence 99999999999999998753
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.1e-95 Score=853.03 Aligned_cols=538 Identities=26% Similarity=0.358 Sum_probs=464.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (680)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~ 197 (680)
.+++++++++++|+.+...++++++.+++.++.|++++.+++..... +...+......++++.++..++.+++.++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999998888899999999999999998887654211 11111111112222233344455555544332
Q ss_pred HHH---------------hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005740 198 ANI---------------VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262 (680)
Q Consensus 198 ~~~---------------~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~ 262 (680)
... .+|++| +++++|++++|+ +|++.+++++...+...+.+++.+++.+++|++++|++++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 111 138887 788999999999 799999999988877788888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 342 (680)
Q Consensus 263 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (680)
++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+........
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888999999999999999999999999999999999999999988888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 005740 343 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 422 (680)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 422 (680)
......+..+..++++++|++++.+|++|+|++++|+.|...+..|+..+...+.+++++..+.+|+.++++.+++.+..
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 66666666666777889999999999999999999999999999999999999999999999999999999987653221
Q ss_pred ccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 005740 423 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 423 ~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 502 (680)
......+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 1111122345789999999999853 457999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHH
Q 005740 503 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 580 (680)
Q Consensus 503 ~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQR 580 (680)
+++.+++|++|+|||||++||+|||+|||++++ +++++||+++|++.++++|||++||+||||.+||+ +||||||||
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 999999999999999999999999999999994 68999999999999999999999999999999994 999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~e 660 (680)
|+||||+++||+|||||||||+||++||+.|++.|+++. +++|+|+||||+++++.||+|+|||+|+|+|+|+|+|
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL----AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999884 4699999999999999999999999999999999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
|+++
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 9975
No 16
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-93 Score=838.28 Aligned_cols=549 Identities=28% Similarity=0.381 Sum_probs=473.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (680)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~ 198 (680)
+++++++++++++.+...++++++..++.++.|+++..+++.... .+...+......++++.++..++.+++.++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888899999999999998888765431 1111121111222223333445555555443321
Q ss_pred H---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005740 199 N---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 263 (680)
Q Consensus 199 ~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l 263 (680)
. ..+|+.||+++++|++++|+ +|++.+++++...+..++.+++..++.++++++++|+++++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 285 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12399999999999999999 6999999998887777777777777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 264 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 343 (680)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (680)
+++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..++..+...+..+......
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99898888888887777777778888889999999999999999999999999999999999999888888777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 005740 344 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 423 (680)
Q Consensus 344 ~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 423 (680)
.....+..+..++++++|++++.+|++|+|++++|.++...+..|+..+...+..++++..+.+|+.++++.+++... .
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-~ 444 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-A 444 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-C
Confidence 556666666677788999999999999999999999999999999999999999999999999999999987765321 1
Q ss_pred cccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 005740 424 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 503 (680)
Q Consensus 424 ~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 503 (680)
.....+...+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 111123345789999999999753 3579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 005740 504 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 581 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRI 581 (680)
++.+++|++|+||+||+++|++||+|||++++ +++++|++++||+.++++|+|+++|+||||.+||+ +|||||||||
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999994 68999999999999999999999999999999983 9999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
+||||+++||+|||||||||+||++||+.+.+.|+++. +++|+|+||||+++++.||+|++|++|+|+|+|+|+||
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC----RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999873 47999999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHhh
Q 005740 662 LHKGRLYAKLVKRQT 676 (680)
Q Consensus 662 l~~~g~Y~~L~~~q~ 676 (680)
++++|.|++|++.|.
T Consensus 679 ~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 679 LALQGLYARLWQQQS 693 (694)
T ss_pred HHcCChHHHHHHhhc
Confidence 999999999998774
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.6e-93 Score=822.99 Aligned_cols=550 Identities=26% Similarity=0.356 Sum_probs=458.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 005740 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKS--SRFLVLLCVTSGIFSGLRS 192 (680)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~~~~~~~~--~~~l~~l~~~~~i~~~~~~ 192 (680)
.|+.+++++++.+++|+.+++.+++.++.+++.+..|++++..++.... .+....... ..+++++.++..++.+++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 7 LWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888899988888888899999999999999888764321 111110000 0111111222333333333
Q ss_pred HHHHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005740 193 GCFSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 257 (680)
Q Consensus 193 ~~~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~ 257 (680)
++..... ...|.++|++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|+
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222110 0138999999999999999999999999999998888889988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 258 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 337 (680)
Q Consensus 258 L~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (680)
++++.++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777777777777777778888999999999999999999999999999999988888777666554
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005740 338 AYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 416 (680)
Q Consensus 338 ~~~~~-~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~ 416 (680)
..+.. ......+..+..+++++++++ +..|.+++|.+++++.|...+..|+..++..+..+.++..+.+|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44332 222222222222333334444 6899999999999999999999999999999999999999999999999876
Q ss_pred CCCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE
Q 005740 417 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 496 (680)
Q Consensus 417 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 496 (680)
++... . . ..+...++|+|+||+|+||+ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 326 ~~~~~-~-~-~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 326 RQQYG-N-D-DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred CccCC-C-C-ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 54211 1 1 11223467999999999984 357999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCC
Q 005740 497 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 574 (680)
Q Consensus 497 dG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LS 574 (680)
||+|+++++.+++|++|+||||||+||+|||+|||++| . +++|+++++|++++|++++|++||+||||.+||+ +||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~-~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-R-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhC-C-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999 4 6899999999999999999999999999999984 999
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive 654 (680)
|||||||+||||+++||+|||||||||+||++||+.|.+.|+++. ++||+|+||||+++++.||+|++||+|+|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~----~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR----EHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 4699999999999999999999999999999
Q ss_pred ecChHHHhhcCcHHHHHHHHhhh
Q 005740 655 VGNHAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 655 ~Gth~eLl~~~g~Y~~L~~~q~~ 677 (680)
.|+|+||+++++.|+++++.|..
T Consensus 555 ~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 555 QGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EcCHHHHHhCCCHHHHHHHHHhh
Confidence 99999999999999999998754
No 18
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-94 Score=774.58 Aligned_cols=537 Identities=29% Similarity=0.415 Sum_probs=440.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 005740 132 WIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFH---KSSRFLVLLCVTSGIFSGLRSGCFSIAN------- 199 (680)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~--~~~~~---~~~~~l~~l~~~~~i~~~~~~~~~~~~~------- 199 (680)
..++.++++++.+-+....+|.++...++.....+ +..+. .....+.+.-+.++++..++...+....
T Consensus 30 ~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~ 109 (591)
T KOG0057|consen 30 FRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDS 109 (591)
T ss_pred ehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555567888899999988876543111 11111 1111122233345555555555544221
Q ss_pred --------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Q 005740 200 --------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLL-TLSWPLTLSALLICSFLS 270 (680)
Q Consensus 200 --------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~-~~s~~L~lv~l~~~~l~~ 270 (680)
..+++++|.+..+|++.+.+..-...+..++...+..++..++.+......+. ...+..+++.+.....+.
T Consensus 110 ~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~ 189 (591)
T KOG0057|consen 110 SSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYA 189 (591)
T ss_pred HHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Confidence 12488999999999999999999889988887777777666655444433232 356666676666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 271 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 350 (680)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (680)
..+....++..+..++...+.++....+.|++.|.++||+||.|++|.++|...+.++.+...+.....++.+.....++
T Consensus 190 a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iF 269 (591)
T KOG0057|consen 190 AFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIF 269 (591)
T ss_pred eeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Confidence 55555556666667777778888999999999999999999999999999999999999999888777777776666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccc
Q 005740 351 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 430 (680)
Q Consensus 351 ~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 430 (680)
......+++.|..-+.+|.+|+|+++....+..++..|+..++..+..+.++..-.+.++...+...++.+ ...+...
T Consensus 270 sv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~ 347 (591)
T KOG0057|consen 270 SVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIEL 347 (591)
T ss_pred HHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCccc
Confidence 66666777788888899999999999999999999999999999999999998877777665443322211 1112223
Q ss_pred ccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh
Q 005740 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 431 ~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR 510 (680)
.++.|+|+||+|+|++ +++||+++||+|++||+|||||+|||||||++++|+|||| ++|+|+|||+||++++++++|
T Consensus 348 ~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 4678999999999974 4579999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHc
Q 005740 511 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 588 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll 588 (680)
+.|||||||..||++||.+||.||+ +++++||+.++||.|++||-|.+||+||+|.|||+ .||||||||+|||||++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 9999999999999999999999996 69999999999999999999999999999999995 89999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 668 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y 668 (680)
|||||++||||||+||++||+.|.+.+... ..+||+|+|+||++++++||+|+|||||+++|.|+|+||+++.+.|
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~----~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~ 579 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDV----MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELY 579 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHh----cCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHH
Confidence 999999999999999999999999999885 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 005740 669 AKLVKRQTES 678 (680)
Q Consensus 669 ~~L~~~q~~~ 678 (680)
+++|..|...
T Consensus 580 ~~~w~~~~~~ 589 (591)
T KOG0057|consen 580 ADLWTTQTSS 589 (591)
T ss_pred HHHhcccccc
Confidence 9999988653
No 19
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.6e-92 Score=809.04 Aligned_cols=550 Identities=35% Similarity=0.513 Sum_probs=475.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (680)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~-~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~ 199 (680)
++++++.+++++.+++++++.++.+++.+..|++++..++...... ...+......++++.++.+++.+++.++.....
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888898988999999999998899998877665432111 111111111222333344444444443332111
Q ss_pred H---------------hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005740 200 I---------------VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 264 (680)
Q Consensus 200 ~---------------~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~ 264 (680)
. ..|.++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|++++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~ 162 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0 1389999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 265 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 344 (680)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (680)
++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|.+..++..+...+..+..+....
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888999999999999999999999999999999999999999999888887766666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q 005740 345 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 424 (680)
Q Consensus 345 ~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 424 (680)
....+..+..++++++|++++..|.+|+|.++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-- 320 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-- 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--
Confidence 556666666777888999999999999999999999999999999999999999999999999999999876653221
Q ss_pred ccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 425 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 425 ~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
........++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 321 ~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 321 TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399 (571)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc
Confidence 11112234679999999999864 45799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 582 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIa 582 (680)
+.+++|++|+||||||+||+|||+|||+++++++++++++++|++.+++++++.+||+||||.|||+ +||||||||||
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999995337999999999999999999999999999999983 89999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHh
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+++||||||||||||+||++||+.|.+.|.+.. ++||+|+||||++.++.||+|++|++|+++|.|+|+||+
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~----~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLM----QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh----CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999999999999874 469999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHhhh
Q 005740 663 HKGRLYAKLVKRQTE 677 (680)
Q Consensus 663 ~~~g~Y~~L~~~q~~ 677 (680)
++++.|+++++.|.+
T Consensus 556 ~~~~~~~~~~~~~~~ 570 (571)
T TIGR02203 556 ARNGLYAQLHNMQFR 570 (571)
T ss_pred HcCCHHHHHHHHhhc
Confidence 999999999987643
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9.8e-92 Score=809.13 Aligned_cols=552 Identities=26% Similarity=0.374 Sum_probs=466.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005740 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF- 195 (680)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~- 195 (680)
.+.++++++++++++..+.+.+++.++..++.+..|++++.+++...... .......++++++++..+..++...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 4 FRLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888889988888888889999999999998888776433211 111111111111122111222111110
Q ss_pred ---H-H--------HH--HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005740 196 ---S-I--------AN--IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261 (680)
Q Consensus 196 ---~-~--------~~--~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv 261 (680)
. . .. ..+|..+|++.++|++++|+++|++.+...+...+..++..++..++.++++++++|+++++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 11389999999999999999999999998887777777777788888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 341 (680)
Q Consensus 262 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (680)
+++++|+..++...+.++.++..++.++..++.++.+.|.++|+++||.|+.++.+.++|.+..++..+...+.......
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888999999999999999999999999999999999999988887776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 005740 342 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 421 (680)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 421 (680)
.......+..+..++++++|++++.+|++|+|++++++.|...+..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 321 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 55555555555667778899999999999999999999999999999999999999999999999999999987554221
Q ss_pred cccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeC
Q 005740 422 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 501 (680)
Q Consensus 422 ~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 501 (680)
..+....+...+.|+|+||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i 399 (588)
T PRK13657 322 PPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI 399 (588)
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh
Confidence 11111112234579999999999853 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHH
Q 005740 502 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 579 (680)
Q Consensus 502 ~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQ 579 (680)
++++.+++|++|+||||||+||+|||+|||++++ ++++|||+++|++.+++++++.++|+|+||.+||+ +|||||||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred hhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 9999999999999999999999999999999995 68999999999999999999999999999999983 89999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChH
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~ 659 (680)
|||||||++++|+|||||||||+||++||+.|.+.|++.. +++|+|+||||+++++.||+|++|++|+++|+|+|+
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~----~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM----KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998874 469999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHhhh
Q 005740 660 ELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 660 eLl~~~g~Y~~L~~~q~~ 677 (680)
||+++++.|+++++.|..
T Consensus 555 ~l~~~~~~y~~l~~~~~~ 572 (588)
T PRK13657 555 ELVARGGRFAALLRAQGM 572 (588)
T ss_pred HHHHCCChHHHHHHHhhc
Confidence 999999999999987643
No 21
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.8e-91 Score=803.28 Aligned_cols=551 Identities=26% Similarity=0.367 Sum_probs=469.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (680)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~ 196 (680)
++.+++++++++++|+.+++.+++.++.+++.++.|++++..++.....+.. .. ....+++..++..+..++...+..
T Consensus 4 ~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 4 FQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LP-TLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999998888654221111 10 011111111222222222221111
Q ss_pred HH----H-----------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005740 197 IA----N-----------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261 (680)
Q Consensus 197 ~~----~-----------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv 261 (680)
.. . ..+|++||+++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 12499999999999999999999999999988888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 341 (680)
Q Consensus 262 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (680)
+++++|++.++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+.
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (585)
T TIGR01192 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWAL 241 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888899999999999999999999999999999999999888887776665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 005740 342 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 421 (680)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 421 (680)
.......+..+..++++++|++++.+|++|+|++++++.|...+..|+..++..+..+.++..+.+|+.++++.+++..+
T Consensus 242 ~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 321 (585)
T TIGR01192 242 ASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 55555555555667778899999999999999999999999999999999999999999999999999999987654322
Q ss_pred cccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeC
Q 005740 422 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 501 (680)
Q Consensus 422 ~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 501 (680)
.......+...+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 322 PADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred CccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 11111112234679999999999752 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHH
Q 005740 502 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 579 (680)
Q Consensus 502 ~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQ 579 (680)
++++.+++|++++||+||+++|++||+|||+++. ++++++|+++|++.+++++++.++|+||||.+||. +|||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 9999999999999999999999999999999994 68999999999999999999999999999999984 99999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChH
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~ 659 (680)
||+|||||+++|+|||||||||+||+++|+.+.+.|+++. +++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999998873 479999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHhh
Q 005740 660 ELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 660 eLl~~~g~Y~~L~~~q~ 676 (680)
||++++|.|+++|+.|.
T Consensus 555 ~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 555 ELIQKDGRFYKLLRRSG 571 (585)
T ss_pred HHHHCCChHHHHHHhCc
Confidence 99999999999998774
No 22
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-94 Score=753.42 Aligned_cols=466 Identities=33% Similarity=0.496 Sum_probs=413.0
Q ss_pred hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 201 VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQY 279 (680)
Q Consensus 201 ~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l-~~~s~~L~lv~l~~~~l~~~~~~~~~~~ 279 (680)
.+++.|+-++++|.+...+......++.++...+..++..++-+....+++ ..++|+.++++++++.++++........
T Consensus 27 ~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~w 106 (497)
T COG5265 27 SLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDW 106 (497)
T ss_pred hcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhh
Confidence 468889999999999877766666777776666666666666655555444 4589999999888877776665544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 280 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVL 359 (680)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (680)
.....+...++.++.++...+++-+.++||.|+.|+.+..+|.+.++.+.++..|.....++.+.....++......+..
T Consensus 107 r~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~ 186 (497)
T COG5265 107 RTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMT 186 (497)
T ss_pred hHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44456667777888999999999999999999999999999999999999999887766666665555666666666777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccc-cccccEEEE
Q 005740 360 LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFV 438 (680)
Q Consensus 360 ~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~g~I~f~ 438 (680)
.++..+..|++|+|+++....|+.++..|+..++..+.++.++....|+.+++++.+.+..+.+...+++ -..|.|.|+
T Consensus 187 ~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~ 266 (497)
T COG5265 187 MSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFI 266 (497)
T ss_pred hcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEE
Confidence 8888899999999999999999999999999999999999999999999999999887765543333333 346789999
Q ss_pred EEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEcc
Q 005740 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 518 (680)
Q Consensus 439 nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Q 518 (680)
||+|.|.. .+++|+|+||++++|+++||||+||+||||+.+||.||||+++|.|.+||+|++++..+++|+.||+|||
T Consensus 267 ~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 267 NVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 99999975 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEE
Q 005740 519 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 596 (680)
Q Consensus 519 d~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILIL 596 (680)
|..||++||..||+|| ++++|+||+++|++.|++|+||.++|+||||.|||+ .||||||||+||||++||+|+||+|
T Consensus 345 DtvLFNDti~yni~yg-r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~ 423 (497)
T COG5265 345 DTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL 423 (497)
T ss_pred cceehhhhHHHHHhcc-CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999 579999999999999999999999999999999996 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHH
Q 005740 597 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 673 (680)
Q Consensus 597 DEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~ 673 (680)
||||||||+.||++||.+|++.. +|||+++||||||||.+||+|+||++|+|+|+|+|+||++++|.|++||.
T Consensus 424 deatsaldt~te~~iq~~l~~~~----~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 424 DEATSALDTHTEQAIQAALREVS----AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred ehhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 99999999999999999999984 68999999999999999999999999999999999999999999999996
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-91 Score=795.22 Aligned_cols=506 Identities=25% Similarity=0.283 Sum_probs=423.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 005740 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF--LVLLCVTSGIFSGLRSGCFSIA 198 (680)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~--l~~l~~~~~i~~~~~~~~~~~~ 198 (680)
++++++.+++++.+++.+++.++.+++.++.|++++..++.....+. ........ ++++.++..++.+++.++....
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999988888888999999999999998887764322111 11100011 1112222333333433322111
Q ss_pred --------H-------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005740 199 --------N-------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 263 (680)
Q Consensus 199 --------~-------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l 263 (680)
+ ..+|.+||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.++++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 160 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 1238999999999999999999999999999988888889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 264 LICSFLSIIVSVYG-QYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 342 (680)
Q Consensus 264 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (680)
+.+|++.++...+. +..++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766554443 44455666677788999999999999999999999999999999999999998888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 005740 343 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 422 (680)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 422 (680)
......+..+..++++++|++++.+|.+|+|.+++++.|...+..|+..+...+..++++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 55555555566677788999999999999999999999999999999999999999999999999999999877653221
Q ss_pred cc--ccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 423 SE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 423 ~~--~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
.. ........++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||++||+|+|+|++|+|++||+|
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 11 11111234679999999999853 469999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHH
Q 005740 501 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 578 (680)
Q Consensus 501 i~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQr 578 (680)
++++ .+++|++||||||||+||+|||+|||++|+ ++++|||+++|++.|+++|||.+||+||||.|||+ +||||||
T Consensus 399 i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 399 VSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred hhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 9999 999999999999999999999999999994 68999999999999999999999999999999994 8999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
||||||||+++|||||||||||||||++||+.|++++++. .+++|+|+||||+
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~----~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA----LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----cCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999987 3579999999996
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.9e-90 Score=794.53 Aligned_cols=553 Identities=35% Similarity=0.545 Sum_probs=468.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (680)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~ 196 (680)
+.+++++++++++++.+.+.+++.++.+++.+..|+++..+++... ..+...+.....+++++.++..++.+++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (576)
T TIGR02204 4 RPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVT 83 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888899999999999999888776422 111111111111222222222333333333222
Q ss_pred HH-------------HH--hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005740 197 IA-------------NI--VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 261 (680)
Q Consensus 197 ~~-------------~~--~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv 261 (680)
.. .. ..|.++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++++
T Consensus 84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 84 WLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 01 1389999999999999999999999999998888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 262 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 341 (680)
Q Consensus 262 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (680)
+++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888878788888888888888888999999999999999999999999999999999999888777766555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 005740 342 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 421 (680)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 421 (680)
.......+.....++++++|++++.+|.+|+|.++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 44444444445556677889999999999999999999999999999999999999999999999999999987654221
Q ss_pred ccccccc-ccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 422 LSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 422 ~~~~~~~-~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
....... .+..+.|+|+||+|+||+++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 1111111 122457999999999986433579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHH
Q 005740 501 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 578 (680)
Q Consensus 501 i~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQr 578 (680)
+++++.+++|++|+||||||++|+|||+|||++|+ +++++|+++++++.++++++++++|+|+||.+||+ +||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 99999999999999999999999999999999995 67899999999999999999999999999999983 8999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecCh
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth 658 (680)
|||+||||++++|+|||||||||+||++||+.|.+.|+++. +++|+|+||||++.++.||+|++|++|+++|.|+|
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM----KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999874 46999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHHh
Q 005740 659 AELLHKGRLYAKLVKRQ 675 (680)
Q Consensus 659 ~eLl~~~g~Y~~L~~~q 675 (680)
++|+++++.|++|++.|
T Consensus 559 ~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 559 AELIAKGGLYARLARLQ 575 (576)
T ss_pred HHHHHcCChHHHHHhhc
Confidence 99999999999999876
No 25
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-90 Score=752.04 Aligned_cols=467 Identities=28% Similarity=0.393 Sum_probs=421.9
Q ss_pred chhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR 282 (680)
Q Consensus 203 ~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~~ 282 (680)
+..+-.+.++|+..+.++..+++++.+++..++.+....+.....++.++++||.-+++.+++.|++.+.+..++++.++
T Consensus 87 gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~ 166 (559)
T COG4988 87 GPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKD 166 (559)
T ss_pred ChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 283 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 362 (680)
Q Consensus 283 ~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 362 (680)
..+++.+....+++++.|.++|+.|+|.|+..+...++..+..+++++..++.-+..-.......++.+++..++.++.+
T Consensus 167 ~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g 246 (559)
T COG4988 167 ASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIG 246 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887554433444455555555555544445
Q ss_pred HHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc-cccccccccEEEEEE
Q 005740 363 MSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNI 440 (680)
Q Consensus 363 ~lv~~-g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nV 440 (680)
...+. |++|......++.+.--++.|+..++..+..-+.+.++.++++.+++.+++..+.... ........+|+++|+
T Consensus 247 ~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l 326 (559)
T COG4988 247 FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENL 326 (559)
T ss_pred HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecce
Confidence 55556 8999998888888888999999999999999999999999999999987664322111 111222345667799
Q ss_pred EEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCC
Q 005740 441 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 520 (680)
Q Consensus 441 sF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~ 520 (680)
+|+||+. +++++|+||+++||+++||||+||||||||+++|+||++|++|+|.+||+|+++++.++||+++++|+|+|
T Consensus 327 ~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 327 SFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred EEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 9999864 38999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeC
Q 005740 521 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 598 (680)
Q Consensus 521 ~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDE 598 (680)
+||+|||||||++| +++++|||+++|++.+++.||+.. |+|+||.+||+ +|||||+||+|+|||+++++++++|||
T Consensus 405 ~lf~gTireNi~l~-~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 405 YLFAGTIRENILLA-RPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred ccccccHHHHhhcc-CCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 99999999999999 468999999999999999999999 99999999994 999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhhh
Q 005740 599 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 599 aTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 677 (680)
|||+||.|||+.|+++|.++. ++||+|+||||+..+++||+|+|||+|+++|+|+|+||++++|.|++|+..|.+
T Consensus 483 pTA~LD~etE~~i~~~l~~l~----~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 483 PTAHLDAETEQIILQALQELA----KQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred CccCCCHhHHHHHHHHHHHHH----hCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999995 469999999999999999999999999999999999999999999999998864
No 26
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-90 Score=862.32 Aligned_cols=464 Identities=23% Similarity=0.343 Sum_probs=405.6
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.++++++++++++.++.+++.+..+
T Consensus 1051 ~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 1130 (1522)
T TIGR00957 1051 SPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSR 1130 (1522)
T ss_pred CChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999888888888777766666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+..+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+..+...+..+.......+.......+ ..++++++|
T Consensus 1131 ~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1207 (1522)
T TIGR00957 1131 QLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAA 1207 (1522)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 77777777888999999999999999999999999998888888877766555433333333222222 223344455
Q ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cccccc--ccccccEEE
Q 005740 362 GMSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QRLMGHVQF 437 (680)
Q Consensus 362 ~~lv~-~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~--~~~~g~I~f 437 (680)
++.+. .|.+++|.+.+++.|+..+..|+..+...+.++.++..|++|+.++++.++|.+.. +...++ ++.+|+|+|
T Consensus 1208 ~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f 1287 (1522)
T TIGR00957 1208 LFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEF 1287 (1522)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEE
Confidence 55554 58899999999999999999999999999999999999999999999877664311 111111 134689999
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEc
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 517 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~ 517 (680)
+||+|+|+++ .++||+||||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+||++++.++||++|++||
T Consensus 1288 ~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1288 RNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred EEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEEC
Confidence 9999999854 247999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEE
Q 005740 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 595 (680)
Q Consensus 518 Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILI 595 (680)
|||+||+|||||||... . +++|||+++|+++|+++|||.++|+||||.||| .+|||||||||||||||+|||+|||
T Consensus 1367 Qdp~LF~gTIr~NLdp~-~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1367 QDPVLFSGSLRMNLDPF-S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred CCCcccCccHHHHcCcc-c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999854 2 689999999999999999999999999999999 3999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHh
Q 005740 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 675 (680)
Q Consensus 596 LDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q 675 (680)
||||||+||++||+.|+++|++.. ++||+|+||||++|+++||||+|||+|+|+|.|+|+||++++|.|++|+++.
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQF----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence 999999999999999999999873 5799999999999999999999999999999999999999999999999863
No 27
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-89 Score=788.14 Aligned_cols=467 Identities=29% Similarity=0.457 Sum_probs=420.1
Q ss_pred chhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 203 ~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l-~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
|.++|++.++|++++|+++|++.++..+...+..++..++..++.++++ +.++|++++++++++|+.+++...+.++.+
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999887777777777766666666555 579999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+...........+..++++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999988888887766665555545555555566778899
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccEEEEEEE
Q 005740 362 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNIS 441 (680)
Q Consensus 362 ~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVs 441 (680)
++++.+|++|+|++++|+.|...+..|+..++..+..+.++..+.+|+.++++.+++.... ....+..+++|+|+||+
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999876543211 11122235689999999
Q ss_pred EEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc
Q 005740 442 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 521 (680)
Q Consensus 442 F~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~ 521 (680)
|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999853 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeCC
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 599 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDEa 599 (680)
||++||+|||++|+ ++++++++++|++.+++++++.++|+||||.+||+ +|||||||||+||||++++|+|||||||
T Consensus 400 lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 400 LFSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 99999999999994 68999999999999999999999999999999984 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhhh
Q 005740 600 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 600 TSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 677 (680)
||+||+++|+.|.+.|+++. +++|+|+||||+++++.||+|++|++|+|+|+|+|+||++++|.|+++++.|..
T Consensus 479 ts~LD~~~~~~i~~~l~~~~----~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQWG----EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred cccCCHHHHHHHHHHHHHHh----CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 99999999999999998873 479999999999999999999999999999999999999999999999987753
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-88 Score=839.47 Aligned_cols=552 Identities=28% Similarity=0.414 Sum_probs=467.9
Q ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 120 LSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (680)
Q Consensus 120 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~ 198 (680)
+.++++|.. ++++.+++++++++++.++..++|++++.+++.....+. .......+++++++..++.+++.+++...
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677764 577778888888888888888889888888764321111 11112223334444555555655544322
Q ss_pred HH---------------hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005740 199 NI---------------VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 263 (680)
Q Consensus 199 ~~---------------~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l 263 (680)
.. .+|++|||+.++|++++|+++|++.++..++..+..++..+++++++++++|+++|+|+++++
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11 139999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 264 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 343 (680)
Q Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (680)
+++|+++++..++.++.++..+..++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....++..
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888889999999999999999999999999999999999998888888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005740 344 MSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 415 (680)
Q Consensus 344 ~~~~~~~~~~~~~~l~~g~~lv~~g--------~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~ 415 (680)
....++..+..++++|+|++++..| .+++|++++++.+......++..+...+..++++..|++|++++++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6666666667778899999999986 58899988877666554555555666778899999999999999998
Q ss_pred CCCCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEE
Q 005740 416 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 495 (680)
Q Consensus 416 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~ 495 (680)
+++.+...++...+. .+.|+|+||+|+||++++.+||+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 365 KPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 776432222222222 2479999999999875445799999999999999999999999999999999999999999999
Q ss_pred E-CCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCC--------------------------------------
Q 005740 496 I-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------------------------------------- 536 (680)
Q Consensus 496 i-dG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-------------------------------------- 536 (680)
+ ||+|+++++.+++|++||||+|||.||++||+|||++|..
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 9 6799999999999999999999999999999999999731
Q ss_pred ------------------CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEE
Q 005740 537 ------------------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 596 (680)
Q Consensus 537 ------------------~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILIL 596 (680)
+++++|++++||+.+++++||.+||+||||.+|++ +|||||||||||||||++||+||||
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 13678999999999999999999999999999984 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCC--------------------------
Q 005740 597 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG-------------------------- 650 (680)
Q Consensus 597 DEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G-------------------------- 650 (680)
|||||+||+++|+.|+++|+++.+. +|+|+|+||||+++++.||+|+||++|
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~--~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 9999999999999999999998531 479999999999999999999999986
Q ss_pred ---------------------EEEEecChHHHhh-cCcHHHHHHHHhh
Q 005740 651 ---------------------RIIEVGNHAELLH-KGRLYAKLVKRQT 676 (680)
Q Consensus 651 ---------------------~Ive~Gth~eLl~-~~g~Y~~L~~~q~ 676 (680)
+|+|+|||+||++ ++|.|+.|++.|.
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 7999999998874
No 29
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-88 Score=846.12 Aligned_cols=464 Identities=24% Similarity=0.327 Sum_probs=371.8
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL-SIIVSVYGQYQ 280 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~-~~~~~~~~~~~ 280 (680)
.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.. ++++++++++ +.+..++.+..
T Consensus 999 ~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~-~~~~~pl~~~~~~~~~~~~~~~ 1077 (1622)
T PLN03130 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTIS-LWAIMPLLVLFYGAYLYYQSTA 1077 (1622)
T ss_pred CCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999999999999999999988899999999888888888888743 3333333322 22334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 281 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLL 360 (680)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (680)
++..+...+..+.+.+++.|+++|+++||+|+.++++.+++.+..+...+..........+....... +..+++++.
T Consensus 1078 r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~ 1154 (1622)
T PLN03130 1078 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLT 1154 (1622)
T ss_pred HHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 66666666677889999999999999999999998766665555444333222111111111111111 122222333
Q ss_pred HHHHHHhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cccccc--ccc
Q 005740 361 GGMSIMIGQ-VS-----PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QRL 431 (680)
Q Consensus 361 g~~lv~~g~-is-----~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~--~~~ 431 (680)
+.+.+..+. .+ .+.+..++.|...+..++..+...+..+.++..+++|+.++++.++|.+.. ++..++ ++.
T Consensus 1155 ~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~ 1234 (1622)
T PLN03130 1155 ASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPS 1234 (1622)
T ss_pred HHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCC
Confidence 344454432 11 233333344555566666667777788899999999999999887764321 111111 234
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
+|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||+
T Consensus 1235 ~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 6889999999999643 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 589 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~ 589 (680)
+|++|||||+||+|||||||.++ . +++|||+++||+.|+++|||+++|+||||.|||+ +|||||||||||||||+|
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~-~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPF-N-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcC-C-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999998 3 6899999999999999999999999999999994 999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc-CcHH
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLY 668 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~-~g~Y 668 (680)
||+|||||||||+||++||+.|+++|++.. ++||+|+||||++|+++||||+|||+|+|+|.|+|+||+++ +|.|
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f 1467 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAF 1467 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHH
Confidence 999999999999999999999999999874 57999999999999999999999999999999999999997 6999
Q ss_pred HHHHHHhh
Q 005740 669 AKLVKRQT 676 (680)
Q Consensus 669 ~~L~~~q~ 676 (680)
++|++.+.
T Consensus 1468 ~~L~~~~~ 1475 (1622)
T PLN03130 1468 SKMVQSTG 1475 (1622)
T ss_pred HHHHHHcC
Confidence 99998764
No 30
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-88 Score=722.83 Aligned_cols=539 Identities=24% Similarity=0.309 Sum_probs=423.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHH-
Q 005740 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA-MVFHKSS--RFLVLLCVTSGIFSGLRSGC-----FSIA- 198 (680)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~-~~~~~~~--~~l~~l~~~~~i~~~~~~~~-----~~~~- 198 (680)
+++|+.+.++++++++..+.++..-...++.|........ ..+.... ..+=++.+...+..|.-... +.+.
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3467788888888888777776665555555532211111 1111000 00011222333332221111 1110
Q ss_pred HHh-------c--chhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Q 005740 199 NIV-------L--DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF- 268 (680)
Q Consensus 199 ~~~-------l--~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l- 268 (680)
..+ . +..-..+.++||+++|+..|++.+++.+-..+...+..++...+..+.+.++||++++.....+.+
T Consensus 92 ~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ 171 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLL 171 (573)
T ss_pred HHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 000 1 334456779999999999999999999988888888888777777777778999998776554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 269 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 348 (680)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (680)
++++..++.++.++..++.....+.+.+.+.|.+.|..+.+.||+++.+.+.+.+....+.+.+.+.++..++...+..+
T Consensus 172 lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l 251 (573)
T COG4987 172 LLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLL 251 (573)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888889999999999999999999999999999999999988888888887776666655555
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCcccccccc
Q 005740 349 LYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 427 (680)
Q Consensus 349 ~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 427 (680)
+.....+..+.+.+-.+-.|..+.-...++++.....+.+...+. ..+..+.+...|++|+.++++.+++...+ ...
T Consensus 252 ~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~--~~~ 329 (573)
T COG4987 252 IAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP--DEQ 329 (573)
T ss_pred HHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--ccc
Confidence 544433323333333455566664333333333334444444455 56678889999999999999998876543 111
Q ss_pred cccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH
Q 005740 428 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 428 ~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~ 507 (680)
.+.....++++||||+||+. +.+||+|+||++++||+|||+|+|||||||+++||.|-|+|++|+|.++|.|++.++.+
T Consensus 330 ~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 330 TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ 408 (573)
T ss_pred cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChh
Confidence 22222279999999999974 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 585 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIAR 585 (680)
.+|+.|++++|.++||++|+|||++++ +||+||||+++|++++|+++++++.|+||||.+||. +||||||||+||||
T Consensus 409 ~~~e~i~vl~Qr~hlF~~Tlr~NL~lA-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 409 ALRETISVLTQRVHLFSGTLRDNLRLA-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred hHHHHHhhhccchHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 999999999999999999999999999 479999999999999999999999999999999993 99999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+||+|+|++||||||.+||++||++|.+.+.+. .+|||+|+||||+.-++.||||+|||+|+|+|+|+|+||++++
T Consensus 488 ~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~----~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~ 563 (573)
T COG4987 488 ALLHDAPLWLLDEPTEGLDPITERQVLALLFEH----AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563 (573)
T ss_pred HHHcCCCeEEecCCcccCChhhHHHHHHHHHHH----hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccc
Confidence 999999999999999999999999999999887 4689999999999999999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 005740 666 RLYAKLVKR 674 (680)
Q Consensus 666 g~Y~~L~~~ 674 (680)
|.|+++++.
T Consensus 564 g~~~~l~q~ 572 (573)
T COG4987 564 GRYKRLYQL 572 (573)
T ss_pred cHHHHHhcc
Confidence 999999864
No 31
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.2e-87 Score=763.96 Aligned_cols=509 Identities=24% Similarity=0.329 Sum_probs=427.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005740 131 KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-RE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN--------- 199 (680)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~-~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~--------- 199 (680)
|+.+.+++++.++.+++.+..|++++..++... .. ....+......++++.++..++.+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888999999999988886542 21 1111111122222333334444455444332111
Q ss_pred ------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005740 200 ------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIV 273 (680)
Q Consensus 200 ------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~ 273 (680)
...|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+..++.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11389999999999999999999999999998888888888888888888999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 274 SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRST 353 (680)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (680)
..+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+...........+..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888899999999999999999999999999999999999988887776665555444444444444
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccc
Q 005740 354 QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMG 433 (680)
Q Consensus 354 ~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g 433 (680)
.+++++++++.+.+|.+|+|.+++++.|...+..|+..++..+..++++..+.+|+.++++.+++... ..... ....+
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~~~~-~~~~~ 319 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KAPVT-AAPAP 319 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcCCC-CCCCC
Confidence 45555677888889999999999999999999999999999999999999999999999985543211 11111 11235
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
+|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 79999999999864 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCC
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p 591 (680)
+||+|||++|++||+|||++|. ++++||++++|++.++++|||+++|+||||.+||+ +|||||||||+||||+++||
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999994 58899999999999999999999999999999984 99999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
+|||||||||+||++||+.|.+.++++. +++|+|+||||+++++.||+|+||
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALA----QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999873 579999999999999999999986
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-87 Score=834.71 Aligned_cols=469 Identities=20% Similarity=0.274 Sum_probs=397.8
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
.|+.||+++++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++++.+..++..+..++.+..+
T Consensus 1044 ~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r 1123 (1560)
T PTZ00243 1044 GTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANR 1123 (1560)
T ss_pred CChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999998888999999999999888988885544433333333444455666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+..+...+..+.+.+.+.|+++|+++||+|+.|+.+.++|.+..+...+..++......+......++..+..+++.+++
T Consensus 1124 ~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~ 1203 (1560)
T PTZ00243 1124 EIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIG 1203 (1560)
T ss_pred HHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888999999999999999999999999999999988888877666544443333333433333333333344
Q ss_pred HHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc----------------
Q 005740 362 GMSI--MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS---------------- 423 (680)
Q Consensus 362 ~~lv--~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---------------- 423 (680)
.+.+ ..+.+++|.+..++.|...+..++..+...+..+.+++.+++|+.++++..++++.+.
T Consensus 1204 ~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 1283 (1560)
T PTZ00243 1204 VIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAA 1283 (1560)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccc
Confidence 3333 3456899999889999999999999999999999999999999999997543211000
Q ss_pred ---------c--cc---ccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 424 ---------E--GV---KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 424 ---------~--~~---~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
. .. +.+...|.|+|+||+|+|+++ .++||+||||+|+|||+|||||+||||||||+++|+|+|+|
T Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p 1362 (1560)
T PTZ00243 1284 DVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV 1362 (1560)
T ss_pred ccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0 00 011235789999999999753 34699999999999999999999999999999999999999
Q ss_pred CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccC
Q 005740 490 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569 (680)
Q Consensus 490 ~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vg 569 (680)
++|+|+|||+|+++++.++||++||+|||||+||+|||||||..+ . +++|||+++||++|+++|||.++|+||||.||
T Consensus 1363 ~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vg 1440 (1560)
T PTZ00243 1363 CGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-L-EASSAEVWAALELVGLRERVASESEGIDSRVL 1440 (1560)
T ss_pred CCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc-c-CCCHHHHHHHHHHCCChHHHhhCccccccccc
Confidence 999999999999999999999999999999999999999999887 3 79999999999999999999999999999999
Q ss_pred CC--CCChHHHHHHHHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEE
Q 005740 570 DD--LLSGGQKQRIAIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 646 (680)
Q Consensus 570 e~--~LSGGQrQRIaIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~v 646 (680)
|+ +|||||||||||||||+++ |+|||||||||+||++||+.|+++|++.. +++|+|+||||++|+++||+|+|
T Consensus 1441 e~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEeccHHHHHhCCEEEE
Confidence 93 9999999999999999996 89999999999999999999999999873 57999999999999999999999
Q ss_pred EeCCEEEEecChHHHhhc-CcHHHHHHHHhhh
Q 005740 647 IDDGRIIEVGNHAELLHK-GRLYAKLVKRQTE 677 (680)
Q Consensus 647 l~~G~Ive~Gth~eLl~~-~g~Y~~L~~~q~~ 677 (680)
||+|+|+|.|+|+||+++ +|.|++|++.+..
T Consensus 1517 Ld~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1517 MDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999985 8999999987653
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-87 Score=836.66 Aligned_cols=465 Identities=23% Similarity=0.325 Sum_probs=376.7
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS-IIVSVYGQYQ 280 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~-~~~~~~~~~~ 280 (680)
.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.+++... ++++++++++ ++..++.+..
T Consensus 996 ~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1074 (1495)
T PLN03232 996 APMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL-WAIMPLLILFYAAYLYYQSTS 1074 (1495)
T ss_pred CCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999998888888888888888888877775433 2222222222 2223344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 281 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLL 360 (680)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (680)
++..+...+..+.+.+.+.|+++|+++||+|+.++++.+++.+..+...+......... .|... .+..+..+++++.
T Consensus 1075 r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~--~~~~~~~~~~~~~ 1151 (1495)
T PLN03232 1075 REVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN-RWLTI--RLETLGGVMIWLT 1151 (1495)
T ss_pred HHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHH
Confidence 55666667778889999999999999999999998777766665554444333221111 11111 1111122222333
Q ss_pred HHHHHH-hCCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cccccc--ccc
Q 005740 361 GGMSIM-IGQV----S-PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QRL 431 (680)
Q Consensus 361 g~~lv~-~g~i----s-~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~--~~~ 431 (680)
|.+.+. .|.+ + .+.+..++.|...+..++..+...+..++.+..+.+|+.++++.++|.+.. .+..++ ++.
T Consensus 1152 ~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~ 1231 (1495)
T PLN03232 1152 ATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPS 1231 (1495)
T ss_pred HHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Confidence 444444 2432 1 233344667777888888888889999999999999999999887764321 111111 234
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.|+|+|+||+|+|+++ .++||+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++.++||+
T Consensus 1232 ~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 5789999999999643 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHcc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 589 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~ 589 (680)
+|++|||||+||+|||||||.++ + +++|||+++|++.|+++|||+++|+||||.|||+ +|||||||||||||||+|
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~-~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPF-S-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCC-C-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 3 7999999999999999999999999999999994 999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcC-cHH
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLY 668 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~-g~Y 668 (680)
||+|||||||||+||++||+.|+++|++.. ++||+|+||||++|+++||||+|||+|+|+|.|+|+||++++ |.|
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f 1464 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEF----KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAF 1464 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHH
Confidence 999999999999999999999999999873 579999999999999999999999999999999999999986 599
Q ss_pred HHHHHHhhh
Q 005740 669 AKLVKRQTE 677 (680)
Q Consensus 669 ~~L~~~q~~ 677 (680)
++|++.+..
T Consensus 1465 ~~l~~~~~~ 1473 (1495)
T PLN03232 1465 FRMVHSTGP 1473 (1495)
T ss_pred HHHHHHhCh
Confidence 999987754
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.4e-86 Score=754.54 Aligned_cols=523 Identities=24% Similarity=0.305 Sum_probs=433.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005740 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANI------ 200 (680)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~~------ 200 (680)
+++|+.++..+++.++.+++.++.|++++.+++... ..+...+......++++.++..++.+++.++......
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888999999999999988886432 1111111111122222233344444444443322111
Q ss_pred -------h--cchhcccccChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005740 201 -------V--LDVYFFDTEAVGGLTSRLTADCQRLSNVIGN-DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 270 (680)
Q Consensus 201 -------~--l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~-~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~ 270 (680)
. +|+ ...++..+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++
T Consensus 82 r~~~~~~ll~~~~-----~~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATL-----RRGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCcc-----cCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 143 23467789999999999998776 4555555444444 446789999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 271 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 350 (680)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (680)
++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+........+.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888999999999999999999999999999999999999988888776666655555555555
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccc
Q 005740 351 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 430 (680)
Q Consensus 351 ~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 430 (680)
.+..++++++|++++.+|++|+|++++++.|...+..|+..+...+..++++..+.+|+.++++.+++.... ...+.
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCC
Confidence 556667788999999999999999999999999999999999999999999999999999999876543211 11222
Q ss_pred ccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh
Q 005740 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 431 ~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR 510 (680)
..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34679999999999753 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHc
Q 005740 511 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 588 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll 588 (680)
++|+||||||++|++||+|||+++. +++++|+++++++.++++++++++|+||||.+||+ +|||||||||+||||++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999884 57999999999999999999999999999999994 99999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+||+|||||||||+||+++|+.+.+.|+++.+ +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKA---RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhh---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999998742 46899999999999999999999999999999999999864
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.8e-83 Score=728.55 Aligned_cols=519 Identities=17% Similarity=0.143 Sum_probs=416.7
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (680)
Q Consensus 119 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~ 197 (680)
.+++++++++ ++|+.+++++++.++.+++.+..|++++..++......... ..+++++.++..++.++..++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGS----LFSFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888 99999999999999999999999988877664321111000 111222223333333433332221
Q ss_pred HH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005740 198 AN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 262 (680)
Q Consensus 198 ~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~ 262 (680)
.. ..+|+.||++.++|++++|+++|++.+++++.. +..++..++++++.++++++++|.+++++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 10 123999999999999999999999999998865 67778888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 263 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYG 340 (680)
Q Consensus 263 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (680)
++++|+.+++..++.++.++..++.++..+++++.+.|.+.|+++||+|+.++ .+.++|.+..+++.+...+......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888877777777677777777788888999999999999999999999954 5678888888887777665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--
Q 005740 341 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-- 418 (680)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~-- 418 (680)
........+..+...+.+++|++. |.+|+|++++|++|...+..|+..++..+..++++..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 322222222222222333444432 789999999999999999999999999999999999999999999864211
Q ss_pred Cc-c-cccc-c---ccccccccEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC
Q 005740 419 NQ-F-LSEG-V---KLQRLMGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 490 (680)
Q Consensus 419 ~~-~-~~~~-~---~~~~~~g~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~ 490 (680)
.. + +... . ......++|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 11 0 1001 0 1112246799999999998531 236999999999999999999999999999999999999999
Q ss_pred CceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC
Q 005740 491 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 570 (680)
Q Consensus 491 ~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge 570 (680)
+|+|++||+|+++++.+++|++|++|+||++||++|++||+ .+++++++++++++.++++++++++|+||||.
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE----GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc----ccchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99999999999999999999999999999999999999995 24789999999999999999999999999996
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 571 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH-ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~-~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
.+||||||||||||||+++||+|||||||||+||++||+.|++.+. .+. .+++|+|+||||+++++.||+|+||++
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~---~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK---RQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999998774 332 247999999999999999999999999
Q ss_pred CEEEEe
Q 005740 650 GRIIEV 655 (680)
Q Consensus 650 G~Ive~ 655 (680)
|+|+|.
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 999975
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.6e-82 Score=788.85 Aligned_cols=465 Identities=19% Similarity=0.261 Sum_probs=388.1
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++.++.+++++..++.+..+
T Consensus 971 ~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r 1050 (1490)
T TIGR01271 971 APMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQ 1050 (1490)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999998776555444444445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+..+...+..+.+.+++.|+++|+.+||+|+.|+.+.+++.+..+...+..+.......+.......+..+..+++ +
T Consensus 1051 ~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~---~ 1127 (1490)
T TIGR01271 1051 QLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAV---T 1127 (1490)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 6777777778899999999999999999999999999999988886554443322222222222222211111111 1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc---------------c
Q 005740 362 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG---------------V 426 (680)
Q Consensus 362 ~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---------------~ 426 (680)
...+....++.|.+..++.|+..+..++..+...+..+..+..+++|+.++++.++|....... .
T Consensus 1128 ~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 1207 (1490)
T TIGR01271 1128 FIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPH 1207 (1490)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCC
Confidence 1112222355666666677777788888888888889999999999999999877653321110 0
Q ss_pred --ccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 427 --KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 427 --~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
+.++..|+|+|+||+|+|++. .++||+||||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|++++
T Consensus 1208 ~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i 1285 (1490)
T TIGR01271 1208 AQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV 1285 (1490)
T ss_pred CCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccC
Confidence 011345889999999999853 4689999999999999999999999999999999999997 899999999999999
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 582 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIa 582 (680)
+.++||++|+||||||+||+|||||||... . +++|||+++|++.++++++|.++|+||||.|||+ +||||||||||
T Consensus 1286 ~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-E-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC 1363 (1490)
T ss_pred CHHHHHhceEEEeCCCccCccCHHHHhCcc-c-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH
Confidence 999999999999999999999999999876 2 6899999999999999999999999999999984 99999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHh
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||||+++|+|||||||||+||++||+.|++.|++.. ++||+|+||||++|+.+||||+|||+|+|+|.|+|+||+
T Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999874 579999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHhhh
Q 005740 663 HKGRLYAKLVKRQTE 677 (680)
Q Consensus 663 ~~~g~Y~~L~~~q~~ 677 (680)
+++|.|++|++.+.+
T Consensus 1440 ~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1440 NETSLFKQAMSAADR 1454 (1490)
T ss_pred cCCcHHHHHHHHhCh
Confidence 999999999987654
No 37
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-83 Score=761.18 Aligned_cols=463 Identities=24% Similarity=0.384 Sum_probs=402.7
Q ss_pred chhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 203 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR 282 (680)
Q Consensus 203 ~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~~ 282 (680)
|++|||.+++|.|++|+++|++.++..+...+..++..++.+++.++++.+..|+..++++.+..++..+..+|.+..|.
T Consensus 905 pm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsRe 984 (1381)
T KOG0054|consen 905 PMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRE 984 (1381)
T ss_pred cchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999998888887777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 283 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 362 (680)
Q Consensus 283 ~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 362 (680)
..+.....++.+.+++.|+++|+.|||+|+.|+++.+++.+..+.+.+..+-......++..-...+ +.++++..+.
T Consensus 985 LkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~i---g~~~v~~~al 1061 (1381)
T KOG0054|consen 985 LKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELL---GNLVVLIAAL 1061 (1381)
T ss_pred HHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 8888888899999999999999999999999999999999988887776554332222222112222 2222222233
Q ss_pred HHHHh-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc-c--ccccccccccEEE
Q 005740 363 MSIMI-GQ-VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-E--GVKLQRLMGHVQF 437 (680)
Q Consensus 363 ~lv~~-g~-is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~--~~~~~~~~g~I~f 437 (680)
..++. +. +++|.....+.|+..+...+.++.+...++...+.|+|||.|+.+.++|.+... + +.+.++.+|+|+|
T Consensus 1062 ~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f 1141 (1381)
T KOG0054|consen 1062 FAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEF 1141 (1381)
T ss_pred HHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEE
Confidence 33332 22 778888888899999999999999999999999999999999999877622111 1 2223467899999
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEc
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 517 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~ 517 (680)
+|++.+|... .++|||||||+|+|||+|||||++|||||||++.|.|+.+|.+|+|.|||+||.++++++||++++++|
T Consensus 1142 ~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIP 1220 (1381)
T KOG0054|consen 1142 EDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIP 1220 (1381)
T ss_pred EEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeC
Confidence 9999999643 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEE
Q 005740 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 595 (680)
Q Consensus 518 Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILI 595 (680)
|||+||+||+|.|+--- .+.+|+|||+|+++|++.++|+++|+|+|+.|.| .|+|-||||.+|+||||||+++|||
T Consensus 1221 QdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv 1298 (1381)
T KOG0054|consen 1221 QDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV 1298 (1381)
T ss_pred CCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE
Confidence 99999999999999644 3689999999999999999999999999999988 3999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc-CcHHHHHHHH
Q 005740 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKR 674 (680)
Q Consensus 596 LDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~-~g~Y~~L~~~ 674 (680)
||||||++|++|+..||++|++.. ++||||.||||++||.+||||+|||+|+|+|.|+|++|+++ ++.|+++..+
T Consensus 1299 LDEATAsVD~~TD~lIQ~tIR~~F----~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1299 LDEATASVDPETDALIQKTIREEF----KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred EecccccCChHHHHHHHHHHHHHh----cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999985 46999999999999999999999999999999999999986 7788766654
Q ss_pred h
Q 005740 675 Q 675 (680)
Q Consensus 675 q 675 (680)
.
T Consensus 1375 ~ 1375 (1381)
T KOG0054|consen 1375 A 1375 (1381)
T ss_pred H
Confidence 3
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.2e-78 Score=646.72 Aligned_cols=528 Identities=25% Similarity=0.333 Sum_probs=435.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q 005740 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVL--- 202 (680)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~l--- 202 (680)
+...|..++...+++.+..++.+..|.|+-+..|..... +...+.....+.++++++.+++..+|..........+
T Consensus 18 l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~ 97 (580)
T COG4618 18 LAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQ 97 (580)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666677788898887776643221 1111111122233445556677777766544332222
Q ss_pred ------chhc---ccccChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005740 203 ------DVYF---FDTEAVGGLTSRLTADCQRLSNVIGND-INMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII 272 (680)
Q Consensus 203 ------~~~f---f~~~~~G~l~srl~~D~~~i~~~~~~~-l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~ 272 (680)
..++ -..+..|+=.+-+ +|.++++.|++.. +..++-...+. +.+.++|.++|++++++++...+++.+
T Consensus 98 L~~~v~~a~~~~~l~~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P-~yl~v~fl~Hp~lG~~a~~ga~iLv~l 175 (580)
T COG4618 98 LNGPVFAASFSAPLLRRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMP-LYLAVIFLFHPWLGLIALAGAIILVVL 175 (580)
T ss_pred hccHHHHHHHhhHHhhcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 2223444433334 6999999998763 33333333333 345567888999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 273 VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS 352 (680)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (680)
.++-.+..++..++..+...+.+..+.-+..|.++|++.|+.+...++|.+.+.++...+.+.+-..+.+......+-.+
T Consensus 176 a~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~ 255 (580)
T COG4618 176 ALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMA 255 (580)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77666666776777777788889999999999999999999999999999999999988887776667777777777788
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccc
Q 005740 353 TQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 432 (680)
Q Consensus 353 ~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 432 (680)
.+..++.+|+|+|+.|++|.|.+++-...+.....|+......|.++..+..|.+|+.+++...|+.. ...+.|..+
T Consensus 256 lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~LP~P~ 332 (580)
T COG4618 256 LQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMPLPAPQ 332 (580)
T ss_pred HHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCCCCCCC
Confidence 89999999999999999999999999889999999999999999999999999999999998877532 335567778
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
|.+.+|+|++.-|+. ++|+|+||||+++|||.+|||||||||||||+++|.|.+.|.+|.|++||-|++++|.+++-++
T Consensus 333 g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 333 GALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred ceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc
Confidence 999999999988874 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~ 590 (680)
|||.|||..||+|||+|||+=. .+++++|.|.+||+.|+.||.|.+||+||||.|||. .|||||||||++|||++.|
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred cCcCcccceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 9999999999999999999533 248999999999999999999999999999999994 9999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|.+++||||.|+||.+-|+.+.++|.+.++ +|.|+|+||||+|.+..+|+|+||++|++...|+-+|.+++
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKA---RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHH---cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999984 58999999999999999999999999999999999999875
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.7e-77 Score=742.08 Aligned_cols=521 Identities=20% Similarity=0.234 Sum_probs=402.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHH---HH----
Q 005740 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL-R-SGCF---SI---- 197 (680)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~-~-~~~~---~~---- 197 (680)
++-+++.++.++++.++..++.++.|+++...+......+.. .. ...++++.++..++..+ . .+.. ..
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 372 (1495)
T PLN03232 296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WV--GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRL 372 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777888888889999988877543222111 00 11111111111111111 0 1111 00
Q ss_pred --------HH--HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005740 198 --------AN--IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 267 (680)
Q Consensus 198 --------~~--~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~ 267 (680)
.+ ..+|..++++.++|++++|+++|++.+++++ ..+..++..++.+++++++++ +.+++.+++.++
T Consensus 373 r~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~ 448 (1495)
T PLN03232 373 RSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSL 448 (1495)
T ss_pred HHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHH
Confidence 00 1237788999999999999999999999986 455556656665555544433 234443333322
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 268 F---LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 344 (680)
Q Consensus 268 l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (680)
+ ++.+..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+.....+....
T Consensus 449 v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~ 528 (1495)
T PLN03232 449 ILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2223445667778888888888999999999999999999999999999999988777766666655443332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q 005740 345 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 424 (680)
Q Consensus 345 ~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 424 (680)
..... ...+.++++|++.+..|.+|+|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.... .
T Consensus 529 ~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~ 605 (1495)
T PLN03232 529 ILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-N 605 (1495)
T ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-c
Confidence 11111 11233467899999999999999999999999999999999999999999999999999999876542211 1
Q ss_pred ccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 425 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 425 ~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
. ......+.|+|+||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 606 ~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------- 675 (1495)
T PLN03232 606 P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------- 675 (1495)
T ss_pred C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------
Confidence 1 111123579999999999864446899999999999999999999999999999999999999999873
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 582 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIa 582 (680)
.+|++||||+|+|+||+|||||||+||+ +.++|++++|++.|+++++++.||+|+||.|||+ +||||||||||
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred ---EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 4788999999999999999999999994 4799999999999999999999999999999994 99999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHH
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~-l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
||||+++||+||||||||||||+++|+.|.+. ++.. .++||+|+||||+++++.||+|++|++|+|+|+|+|+||
T Consensus 751 LARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~----l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE----LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh----hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 99999999999999999999999999988665 5444 357999999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHhh
Q 005740 662 LHKGRLYAKLVKRQT 676 (680)
Q Consensus 662 l~~~g~Y~~L~~~q~ 676 (680)
+++++.|+++++.+.
T Consensus 827 ~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SKSGSLFKKLMENAG 841 (1495)
T ss_pred HhcchhHHHHHHhcc
Confidence 999999999997653
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.3e-76 Score=732.59 Aligned_cols=524 Identities=18% Similarity=0.237 Sum_probs=399.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH--
Q 005740 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM--VFHKSSRFLVLLCVTSGIFS--GLRSGC---FSI-- 197 (680)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~--~~~~~~~~l~~l~~~~~i~~--~~~~~~---~~~-- 197 (680)
++.+++.+++++++.++..++.++.|+++..++......+.. .+.. ..++++..++..++. +.+... ..+
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 374 (1622)
T PLN03130 296 NNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIY-AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRS 374 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788888888899999988877543221110 0000 001111111111110 111100 000
Q ss_pred ------HH--HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005740 198 ------AN--IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 269 (680)
Q Consensus 198 ------~~--~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~ 269 (680)
.. ..+|..++++.++|++++++++|++.+++++. .+..++..++.+++++++++..-...+++.++++.++
T Consensus 375 ~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~ 453 (1622)
T PLN03130 375 TLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLM 453 (1622)
T ss_pred HHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 12377889999999999999999999999874 4566666666666666554432222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 270 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 349 (680)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (680)
+.+..++.++.++.+++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...............
T Consensus 454 ~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1622)
T PLN03130 454 FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI 533 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777778888888999999999999999999999999999888776665555444433322221111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccc
Q 005740 350 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 429 (680)
Q Consensus 350 ~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~ 429 (680)
...+.++++|++.+..|.+|+|.+++++.+...+..|+..+...+..+.++..+++|+.++++.++....+ +. ...
T Consensus 534 --~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~~ 609 (1622)
T PLN03130 534 --PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PLE 609 (1622)
T ss_pred --HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-ccc
Confidence 11344567889999999999999999999999999999999999999999999999999999765432111 11 111
Q ss_pred cccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC-ceEEECCeeCCCCCHHH
Q 005740 430 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 430 ~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-G~I~idG~di~~~~~~~ 508 (680)
...+.|+|+||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.
T Consensus 610 ~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~------------- 676 (1622)
T PLN03130 610 PGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------- 676 (1622)
T ss_pred CCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-------------
Confidence 12357999999999986444679999999999999999999999999999999999999999 9997
Q ss_pred hhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHH
Q 005740 509 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARA 586 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARA 586 (680)
+|++|+||+|+|+||+|||||||+||. +.++|++++|++.|+++++|+.||+|+||.|||+ +||||||||||||||
T Consensus 677 l~~~Iayv~Q~p~LfngTIreNI~fg~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 677 IRGTVAYVPQVSWIFNATVRDNILFGS--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred EcCeEEEEcCccccCCCCHHHHHhCCC--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999994 3689999999999999999999999999999994 999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~-~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+++||+|+||||||||||+++|+.|.+ .++.. .++||+|+||||++.++.||+|++|++|+|+|+|+|+||++++
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~----l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~ 830 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE----LRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNG 830 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHH----hcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcc
Confidence 999999999999999999999998854 56554 3579999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHh
Q 005740 666 RLYAKLVKRQ 675 (680)
Q Consensus 666 g~Y~~L~~~q 675 (680)
+.|+++++.+
T Consensus 831 ~~~~~l~~~~ 840 (1622)
T PLN03130 831 PLFQKLMENA 840 (1622)
T ss_pred hhHHHHHHhc
Confidence 9999998764
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2e-75 Score=667.63 Aligned_cols=518 Identities=19% Similarity=0.168 Sum_probs=390.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 005740 123 MWNLIGRDKWIVLVAVASLIVAAVSEITM-PRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA--- 198 (680)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~--- 198 (680)
++++++++++.+++.+++.++.+++.+.. |++.+..++.... ....+. .+++++++..++.+++.++....
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SLLVLP----EFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888775 5555555553211 111111 11111111122223332222211
Q ss_pred -----H-------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005740 199 -----N-------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 266 (680)
Q Consensus 199 -----~-------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~ 266 (680)
+ ..+|+++|+++++|++++|+++|++.++..+. .+..++.+++.+++.++++++++|++++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 12399999999999999999999999998765 4677788888899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 267 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTE---EKELGRYKIWLEKLAFIRIRESMAYGLWN 343 (680)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (680)
|+.+++...+.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 9888888888888888888888889999999999999999996 5544 34567888877777666555443322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 005740 344 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 423 (680)
Q Consensus 344 ~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 423 (680)
.....+......+.+++++.. +..+.+.+..+..+...+..|+..++..+..++++..+.+|+.++++.+++.+. +
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~ 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c
Confidence 111111111111112222211 122344444445555556789999999999999999999999998765433211 1
Q ss_pred cccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 005740 424 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 503 (680)
Q Consensus 424 ~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 503 (680)
+....+ ..+.|+|+||+|+||++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++
T Consensus 313 ~~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred cccccC-cCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 111111 13579999999999842 479999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 504 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
++.+++|++|+||+||+++|++||+|| + +++++++++++++.+++++++. +|+|. +++.+|||||||||+|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLE-LEDGR---ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhh-ccccC---CCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999 4 3688999999999998888775 35553 2346899999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEe-cChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~-Gth~eLl 662 (680)
|||+++||+|||||||||+||+++|+.|.+.+.+..+ .+++|+|+||||+++++.||+|++|++|+|+|. |+|.+-.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~--~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ--EMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhh
Confidence 9999999999999999999999999999999976532 136899999999999999999999999999987 7777655
Q ss_pred hcC
Q 005740 663 HKG 665 (680)
Q Consensus 663 ~~~ 665 (680)
.++
T Consensus 539 ~~~ 541 (547)
T PRK10522 539 SRD 541 (547)
T ss_pred hhh
Confidence 544
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-72 Score=653.21 Aligned_cols=514 Identities=17% Similarity=0.153 Sum_probs=413.9
Q ss_pred chHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHH
Q 005740 115 TVWIALSRMWNLIGRDKW-----IVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV----LLCVTSG 185 (680)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~----~l~~~~~ 185 (680)
.+++.+++++++++|+++ .+++.++++++.+++.+..|++.+.+++.....+...+......++ ++.++.+
T Consensus 74 ~~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~ 153 (659)
T TIGR00954 74 VFLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINS 153 (659)
T ss_pred HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999887 5667788888889999999999988876543322222221111111 1222233
Q ss_pred HHHHHHHHHHHHHHH---------------hcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 186 IFSGLRSGCFSIANI---------------VLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 250 (680)
Q Consensus 186 i~~~~~~~~~~~~~~---------------~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~ 250 (680)
++.++...+....+. ..++.|||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.+++
T Consensus 154 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~ 232 (659)
T TIGR00954 154 AIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFK 232 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222221111 026677876 7899999999999999999999999999999999988888
Q ss_pred HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q 005740 251 LLT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA 329 (680)
Q Consensus 251 l~~-~s~~L~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~ 329 (680)
++. ++|.+++++++..|+..++.+++.++.++..++.++..+++++...|.++|+++||+|+.|+.+.++|++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 886 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 005740 330 FIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIM-I----GQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSS 398 (680)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~lv~-~----g~is~G~l~a-f~~~---~~~l~~~~~~l~~~~~~ 398 (680)
+...+.....+....+..++... ..++.++.|+..+. . |.+|.|.+++ |+.| +..+..|+..++..+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877766666555555432 22223333342332 2 7899998776 6665 55668999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcc--------cc--cc-------------cccccccccEEEEEEEEEcCCCCCCCcccc
Q 005740 399 LLQSIGATEKVFQLIDLLPSNQF--------LS--EG-------------VKLQRLMGHVQFVNISFHYPSRPTVPILNH 455 (680)
Q Consensus 399 ~~~~~~a~~ri~~~l~~~~~~~~--------~~--~~-------------~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~ 455 (680)
++++.++.+|++++++.+++... ++ +. .......+.|+|+||+|+|+++ +++|+|
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~ 470 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIES 470 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeec
Confidence 99999999999999976433110 00 00 0011134579999999999742 469999
Q ss_pred eeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC
Q 005740 456 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 535 (680)
Q Consensus 456 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~ 535 (680)
+||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++|+||+|+|++|++|++|||.++.
T Consensus 471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~ 539 (659)
T TIGR00954 471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPD 539 (659)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCC
Confidence 9999999999999999999999999999999999999999874 67899999999999999999999974
Q ss_pred C------CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 536 P------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 536 ~------~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
. ++.++++++++++.+++++++.+ |.||||..++ .+||||||||++||||++++|++||||||||+||+++|
T Consensus 540 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 540 SSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred ChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1 34678999999999999999988 9999999887 49999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 609 ~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
+.+.+.+++. |+|+|+||||+++++.||+|++|+.
T Consensus 619 ~~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999988763 6899999999999999999999973
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.2e-68 Score=662.63 Aligned_cols=528 Identities=19% Similarity=0.228 Sum_probs=399.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HH----
Q 005740 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHK--SSRFLVLLCVTSGIFSGLRSGCFS-IA---- 198 (680)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~--~~~~l~~l~~~~~i~~~~~~~~~~-~~---- 198 (680)
+++-+++.++.++++.++..++.++.|+++...++............ ....++++.++.+++.....+... ..
T Consensus 311 l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 390 (1522)
T TIGR00957 311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIK 390 (1522)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777888888899999999988775432111100000 011111111122222111110000 00
Q ss_pred --------H--HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005740 199 --------N--IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 268 (680)
Q Consensus 199 --------~--~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l 268 (680)
+ ..++..++++.++|++++++++|++.+.... ..+..++..++.+++++++++..-...+++.++++++
T Consensus 391 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~ 469 (1522)
T TIGR00957 391 TAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVL 469 (1522)
T ss_pred HHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0 1237888999999999999999999998855 4455566666666655554433222233444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 269 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 348 (680)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (680)
++.+...+.++.++.+++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+....... ...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~~ 545 (1522)
T TIGR00957 470 MVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV----GTF 545 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 5666666777788888888888999999999999999999999999999999988777666554444333222 111
Q ss_pred HHHHH--HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q 005740 349 LYRST--QVMAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 424 (680)
Q Consensus 349 ~~~~~--~~~~l~~g~~lv~~--g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 424 (680)
+.... .+.++.++++.+.. +.++.+..++++.+...+..|+..+...+..+.++..+.+|+.++++.+++......
T Consensus 546 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~ 625 (1522)
T TIGR00957 546 TWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIE 625 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 11111 12233456676664 568899988888888889999999999999999999999999999986643221101
Q ss_pred ccccc-cccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 005740 425 GVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 503 (680)
Q Consensus 425 ~~~~~-~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 503 (680)
..... ...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 626 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 699 (1522)
T TIGR00957 626 RRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----- 699 (1522)
T ss_pred ccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----
Confidence 11111 112479999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred CCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHH
Q 005740 504 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 581 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRI 581 (680)
+||||+|+|++|++||+|||.+|. ..++++..++++.|++.+++..+|+|++|.+||+ +|||||||||
T Consensus 700 --------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 769 (1522)
T ss_pred --------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHH
Confidence 599999999999999999999994 3677888999999999999999999999999994 9999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
+||||++++|+|+|||||||+||+++++.|.+.+.+.... .+++|+|+|||+++.++.||+|++|++|+|+++|+|+|+
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHH
Confidence 9999999999999999999999999999999998643111 357999999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHh
Q 005740 662 LHKGRLYAKLVKRQ 675 (680)
Q Consensus 662 l~~~g~Y~~L~~~q 675 (680)
+++++.|+++++.+
T Consensus 849 ~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 849 LQRDGAFAEFLRTY 862 (1522)
T ss_pred HhcchhHHHHHHhh
Confidence 99999999988643
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-65 Score=606.99 Aligned_cols=522 Identities=21% Similarity=0.262 Sum_probs=395.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------
Q 005740 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSG--LRSGCFSIA------- 198 (680)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~--~~~~~~~~~------- 198 (680)
+-+++.+++..++..+......+.|.++...+....... .......++++..++..++.. .+.+++...
T Consensus 197 ~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~--~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R 274 (1381)
T KOG0054|consen 197 RTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR--LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLR 274 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC--cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Confidence 345666665555566666667788998887775433221 111111222222111111111 112222110
Q ss_pred --------HHhcchhcc--cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005740 199 --------NIVLDVYFF--DTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 268 (680)
Q Consensus 199 --------~~~l~~~ff--~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l 268 (680)
+..+.++-. ...++|++++-++.|++++.++... +..++...+.+++++.+++..=-.-+++.++++.+
T Consensus 275 ~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il 353 (1381)
T KOG0054|consen 275 SALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVL 353 (1381)
T ss_pred HHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 111222222 3567999999999999999987644 56677788888877776665433344555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 269 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 348 (680)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (680)
++.+..+.+++.++.+++..+..++......|.++|||+||.|+.|+.+.++..+.-++-.+.-.|.....++ ...
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~----~~~ 429 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSAL----NSF 429 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 6666777888888888888888999999999999999999999999988877766555444444443322222 222
Q ss_pred HHHH--HHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc
Q 005740 349 LYRS--TQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 425 (680)
Q Consensus 349 ~~~~--~~~~~l~~g~~l-v~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 425 (680)
+... ..+.++.++++. ...+.++....++.+.+...+..|+..+...+..+.++.++.+|+.+++..+...+.....
T Consensus 430 ~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~ 509 (1381)
T KOG0054|consen 430 LNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER 509 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc
Confidence 2211 122333455555 4455778878888888899999999999999999999999999999999765432221111
Q ss_pred cccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC
Q 005740 426 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 505 (680)
Q Consensus 426 ~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~ 505 (680)
.+....+..|+++|.+|++++....+.|+||||+|++|+.+||||+.|||||+|++.|+|-.+..+|++.++|.
T Consensus 510 ~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 510 SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------ 583 (1381)
T ss_pred CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------
Confidence 11222345799999999998633456999999999999999999999999999999999999999999999994
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAI 583 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaI 583 (680)
+|||||+|++|+|||||||.||. ..++|..+++.++|++...++.||.|-.|.|||+ +|||||||||++
T Consensus 584 -------iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 584 -------VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred -------EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 99999999999999999999994 5889999999999999999999999999999995 999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+|+|++|++||+|.||+|+.+.+.|.+..-+. ..++||+|+|||.++.+++||+|+||+||+|+|.|||+||++
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~---~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG---LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh---hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999999999999887665422 257899999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHH
Q 005740 664 KGRLYAKLVKR 674 (680)
Q Consensus 664 ~~g~Y~~L~~~ 674 (680)
.++.|.++..+
T Consensus 732 ~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 732 SGGDFAELAHE 742 (1381)
T ss_pred cchhHHHHhhc
Confidence 99999998544
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-64 Score=628.38 Aligned_cols=518 Identities=19% Similarity=0.243 Sum_probs=399.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005740 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM---VFHKSSRFLVLLCVTSGIFSGLRSGCFSIA------ 198 (680)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~---~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~------ 198 (680)
+.++|.+++..+..++..++.++.|+++..++......+.. ........++++.++..++.....+.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~ 155 (1490)
T TIGR01271 76 RCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI 155 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667788888899999988877543211100 000001111111111112211111111100
Q ss_pred -------H--HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005740 199 -------N--IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 269 (680)
Q Consensus 199 -------~--~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~ 269 (680)
. ..++...+++.++|++++++++|++.+...+... ..++...+.+++++++++.+..+.+++.+++++++
T Consensus 156 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~ 234 (1490)
T TIGR01271 156 ALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILL 234 (1490)
T ss_pred HHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1237778889999999999999999999977554 44566677777777777777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 270 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 349 (680)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (680)
+.+..+++++..+.+++.++..++..+.+.|.++||++||.|+.|+.+.+++.+..++..+...+......... .....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~-~~~~~ 313 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYS-SAFFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 88888888888888888899999999999999999999999999999988887776665555555443322211 11111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccc
Q 005740 350 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 428 (680)
Q Consensus 350 ~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~-~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 428 (680)
....+.++.+++|.+..+ ++++.+++++.|...+..|+. .+...+..+.++.++++||.++++.++.... ...
T Consensus 314 -~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~~~- 387 (1490)
T TIGR01271 314 -SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---EYN- 387 (1490)
T ss_pred -HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---ccc-
Confidence 122234455677776654 688998888888888877864 6888889999999999999999986543211 100
Q ss_pred ccccccEEEEEEEEEcCCCC-------------------------------CCCcccceeEEeeCCcEEEEeCCCCCcHH
Q 005740 429 QRLMGHVQFVNISFHYPSRP-------------------------------TVPILNHVCLTIEANEVVAIVGLSGSGKS 477 (680)
Q Consensus 429 ~~~~g~I~f~nVsF~Y~~~~-------------------------------~~~VL~~isl~I~~Ge~vAIVG~SGsGKS 477 (680)
.....|+++|++|+|++.. .+++|+|+||+|++||.++|+||+|||||
T Consensus 388 -~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 388 -LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred -CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 1123699999999996310 13689999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHH
Q 005740 478 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 557 (680)
Q Consensus 478 TL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI 557 (680)
||+++|+|+++|++|+|.+|| +|+||+|+|+||++||+|||.||. ..++++..++++.|++++++
T Consensus 467 TLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred HHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHHH
Confidence 999999999999999999998 499999999999999999999993 45667788889999999999
Q ss_pred HcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHhccCCCCeEEEEEecC
Q 005740 558 LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHR 634 (680)
Q Consensus 558 ~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-l~~l~~~~~~~~TvIvIaHR 634 (680)
..+|+|++|.|||+ +|||||||||+||||++++|+|+||||||||||+++++.|.+. +..+ .+++|+|+|||+
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~----~~~~tvilvtH~ 607 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL----MSNKTRILVTSK 607 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----hcCCeEEEEeCC
Confidence 99999999999994 9999999999999999999999999999999999999999975 5555 357999999999
Q ss_pred cchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHH
Q 005740 635 LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 673 (680)
Q Consensus 635 lsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~ 673 (680)
++.++.||+|++|++|+|++.|+|+++.+.++.|.+.+.
T Consensus 608 ~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 608 LEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred hHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 999999999999999999999999999998888877763
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.3e-62 Score=606.20 Aligned_cols=524 Identities=18% Similarity=0.205 Sum_probs=399.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHH---
Q 005740 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV-LLC---VTSGIFSGLRSGCFSIA--- 198 (680)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~-~l~---~~~~i~~~~~~~~~~~~--- 198 (680)
..+.+++.+++.+++.++..++.++.|+++...+......+. .. .....++ +++ ++.+++.....+.....
T Consensus 238 l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-~~-~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 315 (1560)
T PTZ00243 238 LFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-TW-GRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQ 315 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888889999999999998876643321111 11 1111111 111 12222221111111100
Q ss_pred ----------HHh--cchhccc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005740 199 ----------NIV--LDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 264 (680)
Q Consensus 199 ----------~~~--l~~~ff~--~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~ 264 (680)
+.. ++...+. +.++|++++.+++|++.+.+++.. +..++...+.+++++++++.+-.+.+++.++
T Consensus 316 ~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~ 394 (1560)
T PTZ00243 316 YRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVA 394 (1560)
T ss_pred HHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 111 1444444 457899999999999999998844 5567778888888888888777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 265 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 344 (680)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (680)
++++++.+..++.++..+.+++..+..++..+...|.++|+|+||.++.|+.+.+++.+..++..+...+......+...
T Consensus 395 vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~ 474 (1560)
T PTZ00243 395 VLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSF 474 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888888888888999999999999999999999999999999988766655554444333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----
Q 005740 345 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ---- 420 (680)
Q Consensus 345 ~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~---- 420 (680)
+.... ...+.++.+++|.+..|.+|++.+++++.+...+..|+..+...+..+.++.++++||.++++.++...
T Consensus 475 ~~~~~--p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 552 (1560)
T PTZ00243 475 VNNAT--PTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQ 552 (1560)
T ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 11111 112233456788888899999999999999999999999999999999999999999999997643100
Q ss_pred cc-c------------c--------------ccc---------------------------cccccccEEEEEEEEEcCC
Q 005740 421 FL-S------------E--------------GVK---------------------------LQRLMGHVQFVNISFHYPS 446 (680)
Q Consensus 421 ~~-~------------~--------------~~~---------------------------~~~~~g~I~f~nVsF~Y~~ 446 (680)
+. . + +.. .....+.+.++|++|++|.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1560)
T PTZ00243 553 DMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPS 632 (1560)
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccc
Confidence 00 0 0 000 0001235788888887542
Q ss_pred C-------------------------------------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 447 R-------------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 447 ~-------------------------------------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
. .++++|+|+||+|++||.++|+||||||||||+++|+|+++|
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~ 712 (1560)
T PTZ00243 633 SASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 0 124589999999999999999999999999999999999999
Q ss_pred CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccC
Q 005740 490 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569 (680)
Q Consensus 490 ~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vg 569 (680)
++|+|.++ ++||||+|+|.+|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.+|
T Consensus 713 ~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred CCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999863 5799999999999999999999983 34667788999999999999999999999999
Q ss_pred CC--CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHhccCCCCeEEEEEecCcchHhhcCEEEE
Q 005740 570 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 646 (680)
Q Consensus 570 e~--~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l-~~l~~~~~~~~TvIvIaHRlsti~~aD~I~v 646 (680)
++ +|||||||||+||||++++|+|||||||||+||+++++.+.+.+ ... .+|+|+|+|||+++.++.||+|++
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~----~~~~TvIlvTH~~~~~~~ad~ii~ 853 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA----LAGKTRVLATHQVHVVPRADYVVA 853 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh----hCCCEEEEEeCCHHHHHhCCEEEE
Confidence 84 99999999999999999999999999999999999988887653 332 247999999999999999999999
Q ss_pred EeCCEEEEecChHHHhhcCcHHHHHHHH
Q 005740 647 IDDGRIIEVGNHAELLHKGRLYAKLVKR 674 (680)
Q Consensus 647 l~~G~Ive~Gth~eLl~~~g~Y~~L~~~ 674 (680)
|++|+|+++|+|+|+++. +.|.++...
T Consensus 854 l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 854 LGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred EECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 999999999999999874 568877654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.8e-57 Score=469.69 Aligned_cols=236 Identities=24% Similarity=0.420 Sum_probs=220.6
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
|+|+|+||+|+|++. +.++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999742 3579999999999999999999999999999999999998 79999999999999999999999
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
|+||||++.+|++|++||+.+.. ..++++++++++.+++++++.++|+||||.++| .+||||||||++||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997441 357889999999999999999999999999998 39999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 670 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~ 670 (680)
|+||||||||++||+++++.+++.|++.. +++|+|+||||+++++.||||+||++|+|+|.|++++|+++++.|++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 232 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQ 232 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHH
Confidence 99999999999999999999999999873 47999999999999999999999999999999999999998899999
Q ss_pred HHHHhh
Q 005740 671 LVKRQT 676 (680)
Q Consensus 671 L~~~q~ 676 (680)
++....
T Consensus 233 ~~~~~~ 238 (275)
T cd03289 233 AISPSD 238 (275)
T ss_pred HHhhcc
Confidence 886543
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-54 Score=417.15 Aligned_cols=216 Identities=35% Similarity=0.534 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC-CCCHHHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~-~~~~~~LR~~ 512 (680)
-|+++||+.+|.+ ..||||||++|++||+++|+||||||||||+++|.++-+|++|+|.+||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999963 46999999999999999999999999999999999999999999999998773 3489999999
Q ss_pred EEEEccCCcCc-cccHHHHHhcCCC---CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 513 IGFVGQEPQLL-QMDIKSNIMYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~~g~~---~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
+|+|+|+..|| +-|+.||+.++ + ...+.+ .-.+.++++|+.|-....|. +|||||+||+|||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~la-p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~---------qLSGGQqQRVAIA 148 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAYPA---------QLSGGQQQRVAIA 148 (240)
T ss_pred cCeecccccccccchHHHHHHhh-hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc---------ccCcHHHHHHHHH
Confidence 99999999999 78999999998 3 122333 34556788888888777775 5899999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||.-+|+++++||||||||||.-.+|.+.+.++.+ .|.|.|+|||-+...++ ||||+.||+|+|+|+|+++++..
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999999999985 48999999999999988 99999999999999999999997
Q ss_pred cC
Q 005740 664 KG 665 (680)
Q Consensus 664 ~~ 665 (680)
+.
T Consensus 226 ~p 227 (240)
T COG1126 226 NP 227 (240)
T ss_pred CC
Confidence 63
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-52 Score=445.40 Aligned_cols=222 Identities=33% Similarity=0.509 Sum_probs=194.6
Q ss_pred ccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCC--C
Q 005740 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT--D 503 (680)
Q Consensus 431 ~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~--~ 503 (680)
..+.|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+. +
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 35689999999999742 3579999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHhhccEEEEccCCcCccccHHHHHhcCCCC-CCCHHHH-----HHHHHHhcHHHHHHcCCCCcccccCC--CCCCh
Q 005740 504 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDI-----EWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 575 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~s~eei-----~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSG 575 (680)
.+...+|+.++||||+|.+|++||+|||.|+... ..++++. .++++.+++ ++++++.+++ .+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCH
Confidence 5667899999999999999999999999987311 2444443 445555554 4556778887 39999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEE
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 654 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive 654 (680)
|||||++||||++++|+|||||||||+||+++.+.+++.|+++. +++|+|+|||++.++.. ||||+||++|+|+|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~----~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK----KKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999884 35899999999999988 99999999999999
Q ss_pred ecChHHHhhc
Q 005740 655 VGNHAELLHK 664 (680)
Q Consensus 655 ~Gth~eLl~~ 664 (680)
.|+++++...
T Consensus 305 ~g~~~~l~~~ 314 (329)
T PRK14257 305 AGETKTIFIH 314 (329)
T ss_pred eCCHHHHhcC
Confidence 9999999864
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-53 Score=426.82 Aligned_cols=219 Identities=35% Similarity=0.555 Sum_probs=193.9
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hh
Q 005740 435 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 509 (680)
Q Consensus 435 I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~L 509 (680)
|+|+|||+.|+... ...+|+||||+|++||+.||+|+||+|||||++++.|+-.|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 89999999998521 24589999999999999999999999999999999999999999999999888877755 55
Q ss_pred hccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 510 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|++||+|+|++.|++ .|+.|||+|.-. ...+ ++++.+.++.+|+.|.-.+-| .+||||||||++|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHHH
Confidence 789999999999997 999999998531 1122 345667888888888776665 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||..+|+||+.|||||||||+|.+.|.+.|+++.++ -|-|+++|||-+..+++ |||+.||++|+|+|+|+-.++.
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~--lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 48899999999999998 9999999999999999999887
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
.+
T Consensus 231 ~~ 232 (339)
T COG1135 231 AN 232 (339)
T ss_pred cC
Confidence 65
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.8e-52 Score=423.41 Aligned_cols=234 Identities=48% Similarity=0.740 Sum_probs=217.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|++||.++...+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999742 356999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ 592 (680)
|++|++.+|+.|++||+.++. +..+.+++.++++..++++++..+|.|+++..+. .+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999874 3456677888889999999999999999998876 4999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
+|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|++++++++.+.|+.++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999999873 3789999999999999999999999999999999999999999999887
Q ss_pred HH
Q 005740 673 KR 674 (680)
Q Consensus 673 ~~ 674 (680)
++
T Consensus 235 ~~ 236 (237)
T cd03252 235 QL 236 (237)
T ss_pred hc
Confidence 64
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-50 Score=421.10 Aligned_cols=239 Identities=31% Similarity=0.513 Sum_probs=219.9
Q ss_pred cccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh
Q 005740 430 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 430 ~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L 509 (680)
...+.|+++||+++|++. +.++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999752 2469999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHH
Q 005740 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 587 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAl 587 (680)
|+.|+||+|++.+|++|++||+.+. . ...++++.++++.+++++++..+|.|++|.+++ .+||||||||++||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPE-C-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcC-C-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999765 2 235677889999999999999999999999987 49999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc-Cc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GR 666 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~-~g 666 (680)
+++|++|||||||++||+++++.+.+.++++. +++|+|++||+++.+..||+|++|++|+|++.|+++++++. ++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 247 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccch
Confidence 99999999999999999999999999998863 46899999999999999999999999999999999999875 67
Q ss_pred HHHHHHHHh
Q 005740 667 LYAKLVKRQ 675 (680)
Q Consensus 667 ~Y~~L~~~q 675 (680)
.|++++..|
T Consensus 248 ~~~~~~~~~ 256 (257)
T cd03288 248 VFASLVRTD 256 (257)
T ss_pred HHHHHHhcc
Confidence 899888654
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-51 Score=407.61 Aligned_cols=215 Identities=35% Similarity=0.574 Sum_probs=195.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+|+|||++|.+ +.+++|+||+|++||.+.++|||||||||++|++.|+++|++|+|+|||.|+++++.-.||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC--CCC----HHHHHHHHHHhcHH--HHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~~--~~s----~eei~~A~~~a~l~--dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
||-|..-|| +.||.|||++- +. .-+ ++++.+.++..+++ +|..+.|. .|||||+||+.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---------eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH---------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch---------hcCcchhhHHHHHH
Confidence 999999999 89999999886 31 113 44566777888875 47777775 58999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||..+|+||++|||.|||||.|.+++|+-+.++.+. -++|+|+|||.+.. ++-||||.||++|+|++.|+++|++++
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998775 37999999999965 677999999999999999999999986
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-50 Score=411.45 Aligned_cols=233 Identities=50% Similarity=0.772 Sum_probs=217.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999642 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ 592 (680)
|++|++.+|++|++||+.++. .+.+++++.++++.+++.+++..+|.|++|.+.. ..||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcC-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999984 4567778888999999999999999999999876 4999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
+|||||||++||+++.+.+.+.|.++. +++|+|+++|+++.+..||++++|++|++++.|+.+++.++.+.|++++
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS----KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999998873 3789999999999999999999999999999999999999888898887
Q ss_pred HH
Q 005740 673 KR 674 (680)
Q Consensus 673 ~~ 674 (680)
..
T Consensus 234 ~~ 235 (236)
T cd03253 234 KA 235 (236)
T ss_pred hc
Confidence 65
No 55
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-50 Score=409.76 Aligned_cols=231 Identities=53% Similarity=0.838 Sum_probs=214.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++++|+++ +.++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|++||.++.+.+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999753 236999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ 592 (680)
|++|++.+|..|++||+.++. .+.+.+++.++++..++.++++.+|.|+++.++. ..||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999984 3556678888899999999999999999998876 4999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHH
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 671 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L 671 (680)
+|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.++.+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999999874 368999999999999999999999999999999999999988888764
No 56
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-51 Score=392.69 Aligned_cols=220 Identities=30% Similarity=0.482 Sum_probs=195.2
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC-----ceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-----G~I~idG~di~~--~~ 505 (680)
..++++||+|.|.+ +.+|+|||++|++++.+|++|||||||||+++.+.|+.|..+ |+|.+||+||.+ +|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999963 469999999999999999999999999999999999999987 999999999976 58
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
.-.||++||+|+|.|.-|..||+||++||.+ +..-||-++++++.|.++|-+.. .++.. ...|||||+||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~s--a~~LSGGQQQR 157 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHKS--ALGLSGGQQQR 157 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhCC--ccCCChhHHHH
Confidence 9999999999999999999999999999932 11224568999999999998753 22211 13699999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~ 659 (680)
+||||||.-+|+||+||||||||||.+..+|.+.|.++++ +-|+++|||.+.-. +-+|+..++-+|+++|.|.-+
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~----~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK----KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh----ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 9999999999999999999999999999999999999964 57999999999765 559999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++..+
T Consensus 234 ~iF~~ 238 (253)
T COG1117 234 KIFTN 238 (253)
T ss_pred hhhcC
Confidence 98764
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-50 Score=406.65 Aligned_cols=227 Identities=48% Similarity=0.779 Sum_probs=210.5
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
++|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999973 2369999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
++|++|++.+|.+|++||+.++. ++..++++.++++..++.++++++|.|+++.++. ..||||||||++|||||+.+
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 3556778888999999999999999999999876 49999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||.++.+..||+|++|++|++++.|+.++++++.|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 99999999999999999999999998873 3789999999999999999999999999999999999887643
No 58
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.2e-49 Score=408.10 Aligned_cols=235 Identities=57% Similarity=0.905 Sum_probs=215.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++++|++..+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|+.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ 592 (680)
|++|++.+|..|++||+.++. ...+.+++.++++..++.+++..+|.|+++..+. .+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccC-CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999984 3456677888888889999999999999998876 4999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
+|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+..+.+++++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998873 4789999999999999999999999999999999999998888877776
Q ss_pred HH
Q 005740 673 KR 674 (680)
Q Consensus 673 ~~ 674 (680)
..
T Consensus 236 ~~ 237 (238)
T cd03249 236 KA 237 (238)
T ss_pred hc
Confidence 43
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-49 Score=402.34 Aligned_cols=218 Identities=38% Similarity=0.627 Sum_probs=204.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
|+|+++||+|+|++. ++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 3479999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
++|++|++.+|++|++|||.+.. ..+++++.++++..++.+++.++|.|++|.+++ .+||||||||++||||++++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763 456788999999999999999999999999876 49999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAF----KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999873 3589999999999999999999999999999886
No 60
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.6e-49 Score=426.03 Aligned_cols=228 Identities=31% Similarity=0.479 Sum_probs=196.6
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---hh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---LR 510 (680)
|+++||+++|++.. +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 246999999999999999999999999999999999999999999999999999887655 58
Q ss_pred ccEEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 511 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 511 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
++||||+|++.+| +.|++||+.++.. ...+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 8999999999999 4899999998631 1122 345677888888877665554 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+.+|++|+||||||+||+++.+.+.+.|+++.++ .|.|+|+|||+++.++. ||+|++|++|+|+|.|++++++.
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999999998642 37899999999999965 99999999999999999999986
Q ss_pred c--CcHHHHHHH
Q 005740 664 K--GRLYAKLVK 673 (680)
Q Consensus 664 ~--~g~Y~~L~~ 673 (680)
. +..++++..
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 4 344555554
No 61
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-49 Score=421.76 Aligned_cols=220 Identities=30% Similarity=0.504 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC-------
Q 005740 434 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------- 504 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~------- 504 (680)
-|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999997421 23699999999999999999999999999999999999999999999999998753
Q ss_pred ---------CHHHhhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcc-cccCC-
Q 005740 505 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD- 570 (680)
Q Consensus 505 ---------~~~~LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~d-T~vge- 570 (680)
+...+|++|+||+|+| .+|.+||+|||.++.. .+.++++..+ . +.+++..+ |++ ...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 4567899999999998 7999999999999831 1234444322 1 12344443 443 23333
Q ss_pred -CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEe
Q 005740 571 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID 648 (680)
Q Consensus 571 -~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~ 648 (680)
.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|+||+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999999998753 378999999999987 5699999999
Q ss_pred CCEEEEecChHHHhh
Q 005740 649 DGRIIEVGNHAELLH 663 (680)
Q Consensus 649 ~G~Ive~Gth~eLl~ 663 (680)
+|+|++.|+|+++.+
T Consensus 251 ~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 251 KGKILKTGTPYEIFT 265 (320)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999997654
No 62
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-49 Score=402.30 Aligned_cols=221 Identities=30% Similarity=0.467 Sum_probs=189.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH---HHhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~---~~LR~ 511 (680)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999964 369999999999999999999999999999999999999999999999999988764 57889
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
.|+||+|++.+|.+ |++||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999975 99999988621 11233 23455566666554443322 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
||++++|+||||||||++||+.+.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999988531 37899999999998875 99999999999999999999987
Q ss_pred cCcHHH
Q 005740 664 KGRLYA 669 (680)
Q Consensus 664 ~~g~Y~ 669 (680)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 665554
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5e-49 Score=399.68 Aligned_cols=217 Identities=31% Similarity=0.511 Sum_probs=196.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.++++||+|+|++ +++|+|+||+|++||.++|+||+|||||||+|.|.|+.+|.+|+|++||+|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999974 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-cCccccHHHHHhcCCCCC---------CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 514 GFVGQEP-QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~-~LF~gTI~eNI~~g~~~~---------~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|||||++ .-|.-|++|=+.+|+.|. .+++.+.+|++..++.++..+. + ..||||||||+.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c------cccChhHHHHHHH
Confidence 9999995 577889999999996442 1233588899999999987542 2 2699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||.++|+||+||||||+||....-+|++.++++.++ +|+|+|+|.|.++. .+.||++++|++|+|+.+|+++|.+
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~--~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE--KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999753 58999999999966 6779999999999999999999988
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 64
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.9e-48 Score=393.24 Aligned_cols=218 Identities=45% Similarity=0.709 Sum_probs=200.7
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
++|+++|++++|+++ +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999742 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
++|++|++.+|..|++||+.++. ...+++++.++++..++.+.+.++|.|++|.+.. ..||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999874 3445678888999999999999999999999876 49999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEec
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~G 656 (680)
|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.++.||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLL----GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999874 247999999999999899999999999998865
No 65
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-49 Score=397.43 Aligned_cols=218 Identities=36% Similarity=0.627 Sum_probs=198.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC-CCCHHHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~-~~~~~~LR~~ 512 (680)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|+|++||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999864 57999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred EEEEccCC--cCccccHHHHHhcCCCCC--CCHHH----HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 513 IGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 513 I~~V~Qd~--~LF~gTI~eNI~~g~~~~--~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
+|+|+|+| .+|..||.|.++||. .+ .+.+| +.+|++.++++++-.+-|. +||||||||+|||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~-~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---------~LSGGqkqRvaIA 150 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVAEALELVGLEELLDRPPF---------NLSGGQKQRVAIA 150 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhch-hhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---------ccCCcceeeHHhh
Confidence 99999999 799999999999994 33 34444 6778889999888665553 6999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
.+|..+|++||||||||+||+...+.+.+.++++.++ .|+|+|+|||++..+.. ||+++||++|+++.+|+++|+.+
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999999753 46899999999999988 99999999999999999999887
Q ss_pred cC
Q 005740 664 KG 665 (680)
Q Consensus 664 ~~ 665 (680)
..
T Consensus 229 ~~ 230 (235)
T COG1122 229 DA 230 (235)
T ss_pred hh
Confidence 54
No 66
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=9.6e-49 Score=368.64 Aligned_cols=215 Identities=35% Similarity=0.537 Sum_probs=194.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|.+++|.|+|...+ =.++++|++||+|||+||||||||||++|+.||..|.+|+|.|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 378999999999999999999999999999999999999999999999877655 47799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~~~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
+++||..|| +-||++||.+|..|.. ..+.+..|+..+|+.+|..+||. .||||||||+|+||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~---------~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc---------ccCchHHHHHHHHHHHh
Confidence 999999999 6899999999975542 45679999999999999999996 58999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcCcH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRL 667 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~g~ 667 (680)
|+-|||+||||.||||+.-.++....+.+++.+ ++.|+++|||.++-++. +|+++++|+|||+++|.-+++++..+.
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999999888888764 57899999999988765 999999999999999999999986543
No 67
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=407.82 Aligned_cols=221 Identities=36% Similarity=0.552 Sum_probs=195.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--cCccccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++ .++..||+|||.++.. ...+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4667899999998731 1123 345778888888888776655 3699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
++++|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||++..+..||+|++|++|++++.|+.+++.+..
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999999998642 378999999999999899999999999999999999987653
No 68
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-48 Score=410.48 Aligned_cols=215 Identities=35% Similarity=0.534 Sum_probs=196.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+.+|++. .+|+|+||+|+.||.++|||||||||||++++|+||.+|++|+|+|||.|+.+++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 68999999999742 2999999999999999999999999999999999999999999999999999998887 789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~-----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|+|+|+.-|| +.||+|||+||.+ .+--++++.++++..++.+.+++.|. .||||||||+||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~---------~LSGGQrQRVAlaRAl 148 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL---------QLSGGQRQRVALARAL 148 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc---------cCChhhHHHHHHHHHH
Confidence 9999999999 6799999999842 11236778999999999999999986 4899999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+++|++++||||.|+||++.......-|.++.++ -+.|+|.|||+-.. ..-||||+||++|+|.+.|++.|+..+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999999999999999999888764 36899999999755 566999999999999999999999975
No 69
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=382.04 Aligned_cols=507 Identities=21% Similarity=0.221 Sum_probs=350.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHH
Q 005740 123 MWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSG----L-RSGCFSI 197 (680)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~----~-~~~~~~~ 197 (680)
++.+.+++++.++..+++.+++++.++..-.++.+............+.....++.++.+.+.+... + +.+++..
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~kl 83 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKL 83 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888777777777766554443333332221111001111112222222222222211 1 1122211
Q ss_pred H----HHhc--chhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005740 198 A----NIVL--DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 271 (680)
Q Consensus 198 ~----~~~l--~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~ 271 (680)
. ..++ |+..+++.+++.++.++++|+..+. +-...++.+.++.+..+++.+++.++|+++.+++++.+.+..+
T Consensus 84 r~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~ 162 (546)
T COG4615 84 RSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIW 162 (546)
T ss_pred HHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 1122 8999999999999999999999998 4445677788999999999999999999999988888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 272 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKE--LGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 349 (680)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (680)
...+...+..+.....++..+++.+..+..++|.++.+....-.++ .+.|....+...+...+ ...+.......
T Consensus 163 ~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~----~n~f~~la~~~ 238 (546)
T COG4615 163 GGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIR----ANTFHLLAVNW 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhh----hhHHHHHHHHH
Confidence 6666656666666667777888999999999999999886433321 22332222222221111 11111011111
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccc
Q 005740 350 YRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 428 (680)
Q Consensus 350 ~~~~~~~~l~~g~~lv~~-g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 428 (680)
.+++...++.+..|+..+ +.-+......+.+....+..|+..+...+..+.++.+|.+||.++-..|+.... ..+...
T Consensus 239 ~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~-~~~q~~ 317 (546)
T COG4615 239 SNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF-PRPQAF 317 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC-CCCCcC
Confidence 111111111222223332 223333444455555566789988888999999999999999987654332211 122222
Q ss_pred ccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH
Q 005740 429 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 429 ~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~ 508 (680)
|+. ..||++||.|+|+.. .-=+.-||++|++||.|-|+|.+||||||+++||.|+|.|++|+|++||.+++.=++++
T Consensus 318 p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 318 PDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred Ccc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH
Confidence 333 469999999999742 24588899999999999999999999999999999999999999999999999999999
Q ss_pred hhccEEEEccCCcCccccHHHHHhcCCCCC-CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-----CCCChHHHHHHH
Q 005740 509 LREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-----DLLSGGQKQRIA 582 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~-~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-----~~LSGGQrQRIa 582 (680)
+|+-++-|+-|-+||+.++ | ++. ++.+.+..-++.-.+ .-.|.+.+ .+||-|||.|+|
T Consensus 395 YR~LfSavFsDyhLF~~ll------~-~e~~as~q~i~~~LqrLel---------~~ktsl~d~~fs~~kLStGQkKRlA 458 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQLL------G-PEGKASPQLIEKWLQRLEL---------AHKTSLNDGRFSNLKLSTGQKKRLA 458 (546)
T ss_pred HHHHHHHHhhhHhhhHhhh------C-CccCCChHHHHHHHHHHHH---------hhhhcccCCcccccccccchHHHHH
Confidence 9999999999999999875 4 333 677766655444333 22344432 289999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEec
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~G 656 (680)
+-=|++-+.||++|||=-+-=||.=.+...+.+--+.++ .|||++.|||.-.-..+|||++.|++|+++|.-
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~--qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKE--QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHH--hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999888877665543 589999999999999999999999999999864
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.6e-48 Score=384.82 Aligned_cols=209 Identities=39% Similarity=0.552 Sum_probs=179.9
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh----
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 509 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L---- 509 (680)
++++||+..|.... ...+|+++||+|++||.|||+||||||||||+++|.++-.|++|+|.++|.|+..++.+.+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57999999997432 2369999999999999999999999999999999999999999999999999999986443
Q ss_pred hccEEEEccCCcCc-cccHHHHHhc----CCCCC-CCHHHHHHHHHHhcHHHHHH-cCCCCcccccCCCCCChHHHHHHH
Q 005740 510 REKIGFVGQEPQLL-QMDIKSNIMY----GCPKD-VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 R~~I~~V~Qd~~LF-~gTI~eNI~~----g~~~~-~s~eei~~A~~~a~l~dfI~-~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
|++||||+|+..|+ +-|++|||.+ ...+. ..++.+.+.++..|+.+... +.|. .||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~---------eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS---------ELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch---------hcCHHHHHHHH
Confidence 56799999999988 6799999984 31111 12455666777778776655 4453 59999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEE
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive 654 (680)
|||||+.+|+|++.||||+|||++|.+.|.+.+.++.++ .|+|+|+|||.......|||++.|.+|++.+
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~--~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE--RGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998653 4789999999999999999999999999654
No 71
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.8e-48 Score=394.32 Aligned_cols=213 Identities=32% Similarity=0.552 Sum_probs=186.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC-----CCCCceEEECCeeCCCCC--HH
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 507 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y-----~p~~G~I~idG~di~~~~--~~ 507 (680)
|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998877 66
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCCC-CC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
.+|++|+||+|++.+|..|++||+.++... .. .++++.++++..++.+.+.+.++ ..+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-------ALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC-------cccCCHHHHHHH
Confidence 788999999999999999999999886311 11 23457778888888766655432 247999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+||||++++|++|||||||++||+++.+.+.+.|+++.+ + +|+|+|||+++.+. .||+|++|++|++++.|+++|
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999853 3 89999999999876 499999999999999999876
Q ss_pred H
Q 005740 661 L 661 (680)
Q Consensus 661 L 661 (680)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 4
No 72
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1e-47 Score=390.88 Aligned_cols=217 Identities=49% Similarity=0.804 Sum_probs=197.5
Q ss_pred ccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh
Q 005740 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 431 ~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR 510 (680)
..+.|+++||+++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234699999999999999999999999999999999999999999999999999888888889
Q ss_pred ccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 005740 511 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
+.++||+|++.+|.+|++||+.++. ...+.+++.+.++..+++++++.+|.|+++.+.. .+||||||||++||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGL-QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcccc-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 3445566667777788999999999999998876 499999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWP----ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999874 35899999999999999999999999975
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=413.33 Aligned_cols=228 Identities=33% Similarity=0.515 Sum_probs=191.8
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---hh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---LR 510 (680)
|+++||+|+|+++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 347999999999999999999999999999999999999999999999999999887654 47
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
++||||+|++.+|. .|++||+.++.. ...++ +++.++++..++.++..+.| .+||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999996 799999988621 12222 34555666666655444332 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+++|+|||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRE--LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998542 37899999999999876 99999999999999999999986
Q ss_pred c--CcHHHHHHH
Q 005740 664 K--GRLYAKLVK 673 (680)
Q Consensus 664 ~--~g~Y~~L~~ 673 (680)
. +..++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 5 234444543
No 74
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-48 Score=380.49 Aligned_cols=227 Identities=36% Similarity=0.509 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC-CHHHhhc
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~-~~~~LR~ 511 (680)
-++.+|+++.|+.+. ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|++||.++..- ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997531 01499999999999999999999999999999999999999999999999776543 3447889
Q ss_pred cEEEEccCCcC-c--cccHHHHHhcCC---CCCCCHHHHHHHHHHhcHHH-HHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 512 KIGFVGQEPQL-L--QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 512 ~I~~V~Qd~~L-F--~gTI~eNI~~g~---~~~~s~eei~~A~~~a~l~d-fI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
.|-+|+|||+- + .-||++=|.=+- .-+-.++++.++++.+|+.+ |..+.|+ .||||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~---------eLSGGQ~QRiaIA 153 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH---------ELSGGQRQRIAIA 153 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch---------hcChhHHHHHHHH
Confidence 99999999982 2 345555543211 11234566899999999865 5566665 4899999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||.-+|++||||||||+||+-..++|.+.|.+++++ .+-|.|+|||.++.+.+ ||||+||++|+|+|.++-+++..
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999765 46699999999999987 99999999999999999999988
Q ss_pred c-CcHHHHH
Q 005740 664 K-GRLYAKL 671 (680)
Q Consensus 664 ~-~g~Y~~L 671 (680)
. .-.|.+.
T Consensus 232 ~~~h~ytr~ 240 (252)
T COG1124 232 HPSHPYTRE 240 (252)
T ss_pred CCccHHHHH
Confidence 6 4456543
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-47 Score=399.17 Aligned_cols=215 Identities=28% Similarity=0.502 Sum_probs=191.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+|+|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999973 24699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCC--cCccccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++ .+|..|+.||+.++.. ...+ ++++.++++..++.++..+.|. .||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY---------HLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh---------hCCHHHHHHHHHHHH
Confidence 9999998 6889999999998721 1122 3456778888888877766653 699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHh
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998853 3789999999999984 69999999999999999987653
No 76
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-47 Score=397.75 Aligned_cols=222 Identities=35% Similarity=0.536 Sum_probs=194.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++ .++..|+.|||.++.. ...+++ ++.++++.+++.++..+.| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4778999999987621 123333 3567778888877655533 3699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
|+++|+||||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+..||+|++|++|++++.|+++++++..+
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 99999999999999999999999999999988542 3789999999999999999999999999999999999987544
No 77
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=393.80 Aligned_cols=219 Identities=31% Similarity=0.457 Sum_probs=190.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCCHHHhh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~~~~~~LR 510 (680)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999974 369999999999999999999999999999999999985 6999999999999998888899
Q ss_pred ccEEEEccCCcCccccHHHHHhcCCC-------CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~gTI~eNI~~g~~-------~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
+.|+|++|++.+|..|++||+.++.. ++..++++.++++..++++++..+.+. .-.+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQ-----NALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcC-----CcccCCHHHHHHHHH
Confidence 99999999999999999999988621 011234566777888876665432211 114799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||++++|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999874 3689999999999875 59999999999999999999998
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
+.
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 64
No 78
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-47 Score=398.86 Aligned_cols=222 Identities=35% Similarity=0.567 Sum_probs=196.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+|+|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999742 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~--~LF~gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++ .+++.|++|||.++... ..+ ++++.++++..++++++...|. .||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH---------RLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc---------cCCHHHHHHHHHHHH
Confidence 9999998 56788999999986211 123 2457778888888888777664 699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
|+.+|+||||||||++||+.+.+.+.+.|+++.+. .|+|+|+|||++..+..||+|++|++|++++.|+.+++.+...
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 99999999999999999999999999999988642 3789999999999999999999999999999999999886543
Q ss_pred H
Q 005740 667 L 667 (680)
Q Consensus 667 ~ 667 (680)
.
T Consensus 233 ~ 233 (279)
T PRK13635 233 M 233 (279)
T ss_pred H
Confidence 3
No 79
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.3e-47 Score=374.37 Aligned_cols=226 Identities=31% Similarity=0.483 Sum_probs=194.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---h
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 509 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---L 509 (680)
.-|++++|+|+|.+ +.||+||||+|++||.++|+|+||||||||++++.|+..|++|+|+++|.|+.+++.++ +
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999964 47999999999999999999999999999999999999999999999999999998754 5
Q ss_pred hccEEEEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHH----HHHHhcHHHH-HHcCCCCcccccCCCCCChHHHHHH
Q 005740 510 REKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEW----AAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~eei~~----A~~~a~l~df-I~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
|+++|+++|+.-||+ -||+||+.|--. .+.+++++++ -++.+|+..- -+.+| ..||||.+.|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRv 154 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRV 154 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHH
Confidence 999999999999995 699999998421 2355666555 3445554443 22233 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~e 660 (680)
|||||+.-||+||++|||||+|||.+...+-+.|+++.+. -+.|+++|||.++++.. ||||+++.+|+|+.+||.+|
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998765 47899999999988876 79999999999999999999
Q ss_pred HhhcCcHH-HHHH
Q 005740 661 LLHKGRLY-AKLV 672 (680)
Q Consensus 661 Ll~~~g~Y-~~L~ 672 (680)
|.+.+..| ++++
T Consensus 233 l~~sd~P~v~qf~ 245 (263)
T COG1127 233 LLASDDPWVRQFF 245 (263)
T ss_pred HHhCCCHHHHHHh
Confidence 99976544 4444
No 80
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-47 Score=411.73 Aligned_cols=216 Identities=28% Similarity=0.475 Sum_probs=192.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.+++.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999953 24699999999999999999999999999999999999999999999999999887754 4789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.|| +.|++|||.|+.. ...+ ++++.++++..++.++..+.|. +||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvalARAL 149 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---------ELSGGQRQRVAMGRAI 149 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---------hCCHHHHHHHHHHHHH
Confidence 9999999999 5799999999732 1122 3457788899999888877774 6999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+++|++|+||||||+||+.+.+.+.+.|+++.++ .|.|+|+|||.+..+. .||+|++|++|+|++.|+++|++++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999988643 3789999999998764 5999999999999999999999875
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-47 Score=390.51 Aligned_cols=216 Identities=35% Similarity=0.537 Sum_probs=184.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---HHHhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~---~~~LR~ 511 (680)
|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999974 146999999999999999999999999999999999999999999999999998877 567889
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 577 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQ 577 (680)
.++||+|++.+|. .|++||+.++... +..++++.++++..++.+...+.| ..|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---------DQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc---------ccCCHHH
Confidence 9999999999886 7999999875210 111334555566665544332211 3799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
|||++||||++++|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999988532 3789999999999998 69999999999999999
Q ss_pred ChHHHhh
Q 005740 657 NHAELLH 663 (680)
Q Consensus 657 th~eLl~ 663 (680)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9999743
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-47 Score=388.26 Aligned_cols=225 Identities=34% Similarity=0.543 Sum_probs=191.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~~-~~s~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
+|++|++.+|..|++||+.++... +..++++.+.++..++. ++..+- -..||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986311 12234555566665553 222211 1379999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcC-cHHH
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG-RLYA 669 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~-g~Y~ 669 (680)
++|||||||++||+++.+.+.+.|+++.++ .|+|+|+|||+++.+.. ||+|++|++|++++.|++++++... ..|.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNK--MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 999999999999999999999999987532 37899999999999875 9999999999999999999998653 2454
Q ss_pred HHH
Q 005740 670 KLV 672 (680)
Q Consensus 670 ~L~ 672 (680)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 443
No 83
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-47 Score=399.65 Aligned_cols=218 Identities=25% Similarity=0.474 Sum_probs=184.8
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----CCHHH
Q 005740 435 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRW 508 (680)
Q Consensus 435 I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----~~~~~ 508 (680)
|+|+||+|+|+... .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHHHHH
Q 005740 509 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 509 LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~e----ei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
+|+.|+||+|+| .+|..|+.||+.|+.. ...+.+ ++.++++..++. ++..+.| ..||||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~LSgGqkqr 152 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP---------FELSGGQMRR 152 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCc---------ccCCHHHHHH
Confidence 899999999988 7999999999998831 112333 344555555552 3322221 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999998853 3789999999999874 59999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.++
T Consensus 230 ~~~~~ 234 (288)
T PRK13643 230 DVFQE 234 (288)
T ss_pred HHHcC
Confidence 98753
No 84
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2e-47 Score=386.13 Aligned_cols=205 Identities=34% Similarity=0.552 Sum_probs=179.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~LR~ 511 (680)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 24699999999999999999999999999999999999999999999999999876643 4788
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+++||+|++.+|. .|++||+.++.. ++..++++.++++..++.++..+.| .+||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999986 599999987521 1123456778888888877766555 369999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
||+.+|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998853 37899999999999875 999999999985
No 85
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=394.61 Aligned_cols=220 Identities=32% Similarity=0.466 Sum_probs=188.7
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~~ 505 (680)
.-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999964 3699999999999999999999999999999999999997 49999999999863 34
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCC-C-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
...+|+.|+||+|++.+|..|++|||.++... . ..++++.++++.+++.+.+ ++.+++.+ .+|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LSgG~~q 157 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNA--LSLSGGQQQ 157 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCc--ccCCHHHHH
Confidence 56789999999999999999999999986311 1 1134566777777765433 33455533 479999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 233 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK----ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESST 233 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999984 35899999999999755 999999999999999999
Q ss_pred HHHhhc
Q 005740 659 AELLHK 664 (680)
Q Consensus 659 ~eLl~~ 664 (680)
+++.++
T Consensus 234 ~~~~~~ 239 (254)
T PRK14273 234 DELFFN 239 (254)
T ss_pred HHHHhC
Confidence 999864
No 86
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-47 Score=387.71 Aligned_cols=219 Identities=32% Similarity=0.498 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hhh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~LR 510 (680)
|+++||+++|+++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12699999999999999999999999999999999999999999999999999887654 358
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 89999999999996 699999987521 1112 345666677777666554433 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
||++++|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999987532 37899999999999865 99999999999999999999875
Q ss_pred c
Q 005740 664 K 664 (680)
Q Consensus 664 ~ 664 (680)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 87
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-47 Score=390.26 Aligned_cols=216 Identities=31% Similarity=0.495 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+. .|+.|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999974 369999999999999999999999999999999999999999999999999876653 36789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CC----C----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV----K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~-~~----s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
+||+|++.+|. .|++||+.++... .. + ++++.++++..++.++..+.| ..||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999995 6999999986310 11 1 234556666666655544433 3699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999988532 36899999999998654 9999999999999999999998
Q ss_pred hcC
Q 005740 663 HKG 665 (680)
Q Consensus 663 ~~~ 665 (680)
+..
T Consensus 226 ~~~ 228 (239)
T cd03296 226 DHP 228 (239)
T ss_pred cCC
Confidence 653
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-47 Score=399.18 Aligned_cols=224 Identities=29% Similarity=0.542 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----CHH
Q 005740 434 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~----~~~ 507 (680)
.|+++||+|+|+++. ++++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997422 13699999999999999999999999999999999999999999999999999754 346
Q ss_pred HhhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCccccc-CC--CCCChHHHHHH
Q 005740 508 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD--DLLSGGQKQRI 581 (680)
Q Consensus 508 ~LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v-ge--~~LSGGQrQRI 581 (680)
.+|+.||||+|+| .+|..|+.|||.++.. ...+.++..+. +.+.+..+ |+++.. .. .+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999997 6898999999998721 12344443322 22334433 555332 22 48999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+|||||+.+|+||||||||++||+.+...+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998532 4789999999999875 699999999999999999999
Q ss_pred HhhcCc
Q 005740 661 LLHKGR 666 (680)
Q Consensus 661 Ll~~~g 666 (680)
+.++..
T Consensus 233 ~~~~~~ 238 (286)
T PRK13646 233 LFKDKK 238 (286)
T ss_pred HHhCHH
Confidence 887543
No 89
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.2e-47 Score=388.79 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I 513 (680)
|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999974 369999999999999999999999999999999999999999999999999998887664 5779
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCCCCCHHHH-------HHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDI-------EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei-------~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaI 583 (680)
+||+|++.+|.+ |++|||.++.. ......+ ........+++.++.+ |++..... ..||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQ-ARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHh-hccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 999999999986 99999988631 1100000 0001111233444443 44443333 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||++.+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999999999998753 47899999999999865 9999999999999999999987
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
+.
T Consensus 232 ~~ 233 (236)
T cd03219 232 NN 233 (236)
T ss_pred cC
Confidence 53
No 90
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.5e-47 Score=384.47 Aligned_cols=212 Identities=26% Similarity=0.513 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++. .+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5799999999742 24699999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+| +.|++||+.++.. ...+ ++++.++++..++.+.. ++.+ ..||||||||++||||++
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA--RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh--hhCCHHHHHHHHHHHHHh
Confidence 999999999 6899999987521 1112 23455556655554433 2222 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eL 661 (680)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVR----KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999884 34899999999999865 999999999999999999875
No 91
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-47 Score=398.41 Aligned_cols=219 Identities=32% Similarity=0.543 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--HHHhh
Q 005740 435 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~--~~~LR 510 (680)
|+++||+|+|++.. .+++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred ccEEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005740 511 EKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 581 (680)
Q Consensus 511 ~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRI 581 (680)
++||||+|+| .+|+.|++|||.++.. ...+.+ ++.++++.+++. +.+.... ..||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5889999999998721 123443 345555655553 0111222 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999988542 3789999999999885 699999999999999999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8753
No 92
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-47 Score=363.57 Aligned_cols=210 Identities=31% Similarity=0.513 Sum_probs=189.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~LR~ 511 (680)
|+|+||+.+|++. +++|+||||+|++||.+-++|||||||||++|||++-..|+.|+|.++|+|+..+..+ -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999964 5799999999999999999999999999999999999999999999999999887655 5899
Q ss_pred cEEEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF-~gTI~eNI~~g~-----~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+||+|+||-.|. +.|+.||++|.- +++.-.+++.++++.+|+.+-...||. .|||||+||+||||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~---------~LSGGEQQRvaIAR 150 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS---------QLSGGEQQRVAIAR 150 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc---------ccCchHHHHHHHHH
Confidence 999999999977 779999999852 222335678889999999999999996 58999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhc-CEEEEEeCCEEEEecCh
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~a-D~I~vl~~G~Ive~Gth 658 (680)
|++.+|++||=||||-+||+++...|++.++++.. .|.||++.||..+.+..+ -|++.+++|+++....+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999999863 589999999999999875 57999999999976543
No 93
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.4e-47 Score=389.15 Aligned_cols=215 Identities=34% Similarity=0.503 Sum_probs=183.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH---HHhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~---~~LR~ 511 (680)
|+++||+++|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987764 45788
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 577 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQ 577 (680)
+++||+|++.+|. .|++||+.++... ...++++.++++..++.++..+.| ..|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 9999999999886 6999999876311 011234555666666655443322 3799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
|||++||||++++|++||||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE--DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999987532 3689999999999985 59999999999999999
Q ss_pred ChHHHh
Q 005740 657 NHAELL 662 (680)
Q Consensus 657 th~eLl 662 (680)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999974
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.4e-47 Score=384.33 Aligned_cols=218 Identities=29% Similarity=0.455 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I 513 (680)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999964 369999999999999999999999999999999999999999999999999988887664 6789
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
+||+|++.+|.+ |++||+.++.. ....++..+. ...+.+.+..+++.+++.+ ..||||||||++||||++++|+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~--~~~~l~~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKAR--LERVYELFPRLKERRKQLA--GTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHH--HHHHHHHHHhhhhhhhCch--hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999986 99999998732 2211111111 1112222222333333332 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
+|||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998853 36899999999998755 99999999999999999988764
No 95
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.9e-43 Score=391.32 Aligned_cols=413 Identities=19% Similarity=0.190 Sum_probs=312.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 217 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW---------------PLTLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 217 srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~---------------~L~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
.|+..|+..+.+........++.++++++...+++..++- .+..++++-+++..++...+++...
T Consensus 152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li 231 (604)
T COG4178 152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI 231 (604)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence 7999999998887777777788888777776666653332 2223333333333444556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+.+-..++..+.....+.-.-++.+.|-.|+.|+.|.++.++......+...+.......++.+......+..++-+.++
T Consensus 232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ 311 (604)
T COG4178 232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIA 311 (604)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhc
Confidence 77666666777777777788889999999999999988777766665554433332222222222222222334444556
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCccccccc-c-cccccc
Q 005740 362 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL------LPSNQFLSEGV-K-LQRLMG 433 (680)
Q Consensus 362 ~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~------~~~~~~~~~~~-~-~~~~~g 433 (680)
+-....|+++.|+++.....+.++...+.++...+..+..-.+...|+.++.+. +++.....+.. . ....+.
T Consensus 312 ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (604)
T COG4178 312 APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADH 391 (604)
T ss_pred cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccc
Confidence 666788999999999888888888888888888888998888999999987632 22111111100 0 011146
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+|+||+-.-|+. ...|+++||+++|||.+-|.||||||||||++.|+|+++--+|+|-.=. -..+
T Consensus 392 ~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~ 458 (604)
T COG4178 392 GITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSAL 458 (604)
T ss_pred eeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCce
Confidence 79999999999864 4799999999999999999999999999999999999999999986531 1358
Q ss_pred EEEccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
-|+||.|++=.||+||=|+|-+.+ +.+|+|+.+++.+|++.++++++.+--+ =+..||||||||||+||.++++|+
T Consensus 459 lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---W~~vLS~GEqQRlafARilL~kP~ 535 (604)
T COG4178 459 LFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQQRLAFARLLLHKPK 535 (604)
T ss_pred EEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---HhhhcChhHHHHHHHHHHHHcCCC
Confidence 899999999999999999997543 3899999999999999999998643111 013899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
+++|||||||||+++|..+.+.+++- ..+.|+|-|+||.......++.+-+++
T Consensus 536 ~v~LDEATsALDe~~e~~l~q~l~~~----lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 536 WVFLDEATSALDEETEDRLYQLLKEE----LPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred EEEEecchhccChHHHHHHHHHHHhh----CCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999875 357899999999999888888766643
No 96
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=404.54 Aligned_cols=217 Identities=32% Similarity=0.540 Sum_probs=197.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+|+||+.+|. +..+++|+||+|++||.++++|||||||||++++|+||.+|++|+|++||.|+.+++.+ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 4699999999997 35799999999999999999999999999999999999999999999999999997765 578
Q ss_pred EEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 513 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
||+|+|+--|| +.||+|||+||.. .... ++.+.++++.+++.+|-.+.|. .|||||+||+||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~---------qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH---------QLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh---------hhChHHHHHHHHHH
Confidence 99999999999 8999999999953 1122 2478899999999998888775 58999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||..+|++|+||||.||||.+-...++..++++.++ .|.|.|+|||.-.. +..+|||+||++|+|...||++|++.+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999998765 48999999999755 677999999999999999999999976
Q ss_pred C
Q 005740 665 G 665 (680)
Q Consensus 665 ~ 665 (680)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 3
No 97
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-47 Score=408.98 Aligned_cols=216 Identities=30% Similarity=0.489 Sum_probs=191.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.+.+. .+++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRD 79 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987764 3678
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
|+||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.|. .||||||||+|||||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~---------~LSgGq~QRVaLARa 150 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD---------QISGGQQQRVALARA 150 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---------hCCHHHHHHHHHHHH
Confidence 999999999995 699999999732 1122 3567788888888777655553 699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+++|++|+||||||+||+.+.+.+.+.|+++.++ .++|+|+|||.++.+ .-||+|+||++|+|++.|+++++.++
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988642 378999999999987 55999999999999999999999875
No 98
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=393.90 Aligned_cols=220 Identities=34% Similarity=0.601 Sum_probs=192.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999742 35799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~--~LF~gTI~eNI~~g~~~-~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++ .++..|++|||.++... ..+.+ .+.++++..++.++..+.| .+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 46678999999986311 12333 3566777778877766554 4799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
|+++|++|||||||++||+.+.+.+.+.|+++.++ .++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998532 258999999999999899999999999999999999887643
No 99
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-47 Score=378.56 Aligned_cols=200 Identities=35% Similarity=0.536 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.+++++|+.+|++ ..||+||||+|++||.|+||||||||||||++++.|+.+|++|+|+++|.++.+. ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999975 4799999999999999999999999999999999999999999999999988543 4679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCC------CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPKDV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~~~------s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++.||. -||+||+.+|.. .. .++.+.++++.+|+.+|-.+.|. .||||||||+|||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~-~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~---------qLSGGMrQRVaiARA 144 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLE-LRGKSKAEARERAKELLELVGLAGFEDKYPH---------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEEeccCcccchhhHHhhheehhh-ccccchHhHHHHHHHHHHHcCCcchhhcCcc---------ccChHHHHHHHHHHH
Confidence 99999999995 799999999842 21 24568889999999999888885 589999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeC--CEEE
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDD--GRII 653 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~--G~Iv 653 (680)
|+.+|+||+||||.||||+.|....++-+.++.++ .++|+++|||.+.. +.-+|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999998764 57999999999976 566999999999 5553
No 100
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-47 Score=383.62 Aligned_cols=206 Identities=35% Similarity=0.557 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998754 3578899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|. .|++||+.++... ..+ ++++.++++..++.++..+.| .+||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999885 6999999876210 112 234566677777666555443 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
++|++|||||||++||+++.+.+.+.|+++.++ .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRE--LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999987531 37899999999998755 9999999999999876
No 101
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=385.33 Aligned_cols=213 Identities=31% Similarity=0.436 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---h
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---L 509 (680)
-|+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-ccEEEEccCCcCccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 510 R-EKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 R-~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
| +.|+||+|++.+|.. |++||+.++.. ...+ ++++.++++..++.++..+.| .+||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 3 679999999999965 99999987411 0112 234556666665544433322 379999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
||||++.+|++|||||||++||+++.+.+.+.|+++.+. +|+|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL--QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999987531 3789999999999999999999999999999875
No 102
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=395.58 Aligned_cols=222 Identities=31% Similarity=0.528 Sum_probs=194.1
Q ss_pred cEEEEEEEEEcCCCC---CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-HHHh
Q 005740 434 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~---~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-~~~L 509 (680)
-|+++||+|+|++.. ++++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hccEEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 510 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
|++|+||+|++ .+|..|+.||+.++... ..+ ++++.++++..++.++..+.| ..||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 89999999998 47778999999987210 122 356778888888888877665 369999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHh
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||++++|++|||||||++||+.+...+.+.|+++.++ .|+|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK--YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988532 378999999999999999999999999999999999998
Q ss_pred hcCc
Q 005740 663 HKGR 666 (680)
Q Consensus 663 ~~~g 666 (680)
++..
T Consensus 233 ~~~~ 236 (280)
T PRK13633 233 KEVE 236 (280)
T ss_pred cChH
Confidence 6543
No 103
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-46 Score=376.64 Aligned_cols=204 Identities=33% Similarity=0.540 Sum_probs=181.8
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.+.|+++|++++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3579999999999742 246999999999999999999999999999999999999999999999999999999889999
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
.|+||+|++.+|++|++||+.+.+ ..+++++.++++ ++.. -..|||||+||++||||++++|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~--------------~~~~--~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR--------------VSEG--GLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh--------------ccCC--CCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999998762 345566655554 1111 1479999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecCh
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth 658 (680)
++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999873 47899999999999988999999999999998863
No 104
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-46 Score=393.69 Aligned_cols=219 Identities=29% Similarity=0.493 Sum_probs=192.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999642 36999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCC--cCccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 515 FVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 515 ~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
||+|++ .+|+.|++||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999998 4788999999987521 12232 34677888888877766655 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
+.+|++|||||||++||+.+.+.+.+.|+++.++ .++|+|++||+++.+ +.||+|++|++|++++.|+++|+++...
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999988642 368999999999998 5699999999999999999999986543
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=395.44 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~~~~~~LR~ 511 (680)
-|+++||+|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 345677899
Q ss_pred cEEEEccCC--cCccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 512 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 512 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
.|+||+|++ .+|+.|++||+.++.. .+.+. +++.++++..+++++..+.+ .+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc---------ccCCHHHHHHHHHH
Confidence 999999998 5789999999988521 12232 34566677777765533221 37999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+.+|+||||||||++||+++.+.+.+.|+++.++ .|+|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999988542 3789999999999987 599999999999999999999887
Q ss_pred cC
Q 005740 664 KG 665 (680)
Q Consensus 664 ~~ 665 (680)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 54
No 106
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.9e-47 Score=408.34 Aligned_cols=204 Identities=38% Similarity=0.523 Sum_probs=183.6
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh----hccEEEEccCCcCcc-
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ- 524 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L----R~~I~~V~Qd~~LF~- 524 (680)
+.+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.|+.+++..++ |++|+||+|++.||.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999999888 889999999999996
Q ss_pred ccHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCC
Q 005740 525 MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 599 (680)
Q Consensus 525 gTI~eNI~~g~~-~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEa 599 (680)
.||+|||.++.. ... .++++.++++.+++.+++.+.|. +||||||||++|||||+++|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---------~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---------ELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---------hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 699999998731 011 24567788888888877766664 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 600 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 600 TSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||+||+.+.+.+++.+.++.+. .++|+|+|||++..+ +.||+|++|++|+|++.|+++|++++
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~--~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQAT--LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999988542 379999999999875 56999999999999999999999875
No 107
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-47 Score=390.62 Aligned_cols=219 Identities=32% Similarity=0.531 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~~ 506 (680)
.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999964 369999999999999999999999999999999999975 689999999999975 455
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.|+||+|++.+|..|++||+.++.. .. ..++++.++++.+++++++..+. +.. -.+||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~~--~~~LSgGq~qr 157 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL---HES--ALGLSGGQQQR 157 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hCC--cccCCHHHHHH
Confidence 678999999999999999999999987621 01 12346677788877765543211 111 14799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 3589999999999985 59999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 99864
No 108
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.1e-46 Score=388.46 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCCC--CHH
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 507 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~~--~~~ 507 (680)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|++||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 36999999999999999999999999999999999999998 99999999999763 456
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCC-CC-CC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
.+|+.|+||+|++.+|..|++||+.++.. .. .+ ++++.++++..++.+++.. -.+..+ ..||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LSgG~~qrv 153 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RLHDSA--LGLSGGQQQRL 153 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---HhhCCc--ccCCHHHHHHH
Confidence 78899999999999999999999987521 11 12 2456667777777643321 111111 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998853 489999999999875 599999999999999999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
+...
T Consensus 230 ~~~~ 233 (247)
T TIGR00972 230 IFTN 233 (247)
T ss_pred HHhC
Confidence 9764
No 109
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.3e-46 Score=388.46 Aligned_cols=239 Identities=28% Similarity=0.426 Sum_probs=205.0
Q ss_pred HHHHHHhhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 407 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 407 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+.+.+++..+++.. +..+.+...+.|+++||++. + +++|+|+||+|++||++||+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45666776654422 22223334567999999995 1 3699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccc
Q 005740 487 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 566 (680)
Q Consensus 487 y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT 566 (680)
++|++|+|.+|| .|+||+|++.+|++|++||+.++. ...+.++.++++.+++.+.+..+|.+++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 399999999999999999999873 23455677788888999999999999999
Q ss_pred ccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHhccCCCCeEEEEEecCcchHhhcCE
Q 005740 567 LVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDR 643 (680)
Q Consensus 567 ~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l-~~l~~~~~~~~TvIvIaHRlsti~~aD~ 643 (680)
.+++ ..||||||||++||||++++|++|||||||++||+++...+.+.+ +++. +++|+|+|||++..+..||+
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~ 227 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADK 227 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCE
Confidence 9876 499999999999999999999999999999999999999888754 4542 36899999999999999999
Q ss_pred EEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 644 IVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 644 I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
|++|++|++++.|+++++.+....|.+.+
T Consensus 228 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999999987666666554
No 110
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-46 Score=396.03 Aligned_cols=222 Identities=28% Similarity=0.432 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----CCHH
Q 005740 434 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----~~~~ 507 (680)
.|+++||+|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997421 1469999999999999999999999999999999999999999999999999963 3466
Q ss_pred HhhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 508 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 508 ~LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..|+.|+||+|+| .+|+.|++|||.++.. ...+.++ +.++++..++++.+ .++.+ ..||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~--~~LSgGq~qr 153 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LARSP--FELSGGQMRR 153 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hhCCc--ccCCHHHHHH
Confidence 7889999999998 6889999999998721 1234333 44455555553211 11111 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++|||||+.+|++||||||||+||+.+...+.+.|+++.++ .|.|+|+|||+++.+. .||||++|++|+|++.|+.+
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~--~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988542 3789999999999975 59999999999999999999
Q ss_pred HHhhcC
Q 005740 660 ELLHKG 665 (680)
Q Consensus 660 eLl~~~ 665 (680)
++.++.
T Consensus 232 ~~~~~~ 237 (290)
T PRK13634 232 EIFADP 237 (290)
T ss_pred HHhcCH
Confidence 987543
No 111
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.1e-46 Score=406.41 Aligned_cols=215 Identities=30% Similarity=0.465 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.|| +.|++|||+|+... ..+ ++++.++++..++.++..+.| ..||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARAL 149 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999999 57999999997321 122 345667777777766655544 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+++|++|+||||||+||+.+.+.+.+.|+++.++ .+.|+|+|||+++.+ .-||+|++|++|+|++.|+++|++++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988643 378999999999986 45999999999999999999999975
No 112
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=393.01 Aligned_cols=221 Identities=33% Similarity=0.497 Sum_probs=189.4
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh----hc
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----RE 511 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L----R~ 511 (680)
.++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888853 469999999999999999999999999999999999999999999999999988776554 46
Q ss_pred cEEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF-~gTI~eNI~~g~~-----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+|+||+|++.+| +.|++||+.++.. ....++++.++++..++.+++.+.|. .||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---------ELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc---------cCCHHHHHHHHHHH
Confidence 899999999999 5799999987521 01123457778888888877776663 69999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|++++|+||||||||++||+.+.+.+.+.|+++.++ .|+|+|++||+++.+. .||+|++|++|++++.|+++|+++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE--LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999988532 3789999999999875 5999999999999999999999864
Q ss_pred -CcHHHH
Q 005740 665 -GRLYAK 670 (680)
Q Consensus 665 -~g~Y~~ 670 (680)
...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 344443
No 113
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-46 Score=375.82 Aligned_cols=199 Identities=35% Similarity=0.499 Sum_probs=180.4
Q ss_pred EEEEEEEEEcCCCCC--CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 435 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~--~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
|+++||+++|+++.+ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
|+||+|++.+|++|++||+.++. ..+++++.++++.+++.+++..+|.|++|.+++ ..||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 345677888999999999999999999999986 48999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHH-HHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCE
Q 005740 591 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 651 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~-l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~ 651 (680)
|+++||||||++||+++.+.+.+. +++..+ +++|+|++||+++.+..||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998888774 555532 3689999999999999999999999985
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=390.05 Aligned_cols=224 Identities=30% Similarity=0.443 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|+.|
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~---------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
+||+|++.+|. .|+.||+.++... +..++++.++++..++.+++.+.|. +||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD---------SLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc---------cCCHHHHHHHHH
Confidence 99999987765 5999999986210 1124567788888888776655542 699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||++.+|++|||||||++||+.+.+.+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999988532 3689999999999985 59999999999999999999987
Q ss_pred hcCcHHHHHH
Q 005740 663 HKGRLYAKLV 672 (680)
Q Consensus 663 ~~~g~Y~~L~ 672 (680)
+. ..+.+++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 53 3444544
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.6e-46 Score=383.15 Aligned_cols=225 Identities=33% Similarity=0.517 Sum_probs=185.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999964 36999999999999999999999999999999999999999999999999998876544 45899
Q ss_pred EEccCCcC-ccccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 515 FVGQEPQL-LQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 515 ~V~Qd~~L-F~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
|++|++.+ +..|++||+.++.. ...+.++..+ .+.++++.+ |++..... ..||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 57899999987621 1222222111 122333332 33333333 37999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcC--cHH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG--RLY 668 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~--g~Y 668 (680)
|++|||||||++||+++.+.+.+.|+++.+. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.. ..+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADL 228 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccH
Confidence 9999999999999999999999999988532 378999999999999899999999999999999999998763 234
Q ss_pred HHHH
Q 005740 669 AKLV 672 (680)
Q Consensus 669 ~~L~ 672 (680)
++.+
T Consensus 229 ~~~~ 232 (236)
T TIGR03864 229 EAAF 232 (236)
T ss_pred HHHH
Confidence 4444
No 116
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-46 Score=387.50 Aligned_cols=216 Identities=31% Similarity=0.493 Sum_probs=186.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---------
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 505 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~--------- 505 (680)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 36999999999999999999999999999999999999999999999999997653
Q ss_pred ----HHHhhccEEEEccCCcCc-cccHHHHHhcCCC--CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCC
Q 005740 506 ----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 574 (680)
Q Consensus 506 ----~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LS 574 (680)
...+|+.++||+|++.+| ..|+.||+.++.. ... .++++.++++..++.++..+.| ..||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 246789999999999988 4899999987521 011 2344566666676666555444 3699
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Iv 653 (680)
||||||++||||++++|++|||||||++||+++...+.+.|+++.++ .++|+|+|||++..+. .||+|++|++|+++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987542 3789999999999985 59999999999999
Q ss_pred EecChHHHhhc
Q 005740 654 EVGNHAELLHK 664 (680)
Q Consensus 654 e~Gth~eLl~~ 664 (680)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999865
No 117
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-46 Score=389.34 Aligned_cols=219 Identities=35% Similarity=0.567 Sum_probs=188.2
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--C
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 504 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~ 504 (680)
.+.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 467999999999974 369999999999999999999999999999999999997 589999999999863 4
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 576 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGG 576 (680)
+...+|++|+||+|++.+|..|++||+.++.. ...+ ++++.++++.+++.+.+.. .... .+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence 56788999999999999999999999998621 1122 2456677777776443321 2222 379999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~ 655 (680)
||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK----QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999884 3589999999999885 5999999999999999
Q ss_pred cChHHHhhc
Q 005740 656 GNHAELLHK 664 (680)
Q Consensus 656 Gth~eLl~~ 664 (680)
|+.+++...
T Consensus 237 g~~~~~~~~ 245 (260)
T PRK10744 237 GNTDTIFTK 245 (260)
T ss_pred CCHHHHHhC
Confidence 999999864
No 118
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.4e-46 Score=378.63 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=178.4
Q ss_pred EEEEEEEEEcCCCCC-CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 435 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~-~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
|+++||+++|+++.. .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975311 169999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEccCCcCccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
+||+|++.+|.+ |++||+.+... ...+ ++++.++++..++.+...+.+ ..||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 999999999985 99999986421 1122 344566667766665544322 37999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
+.+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999998853 37899999999998765 9999999999999865
No 119
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-46 Score=369.89 Aligned_cols=224 Identities=34% Similarity=0.524 Sum_probs=195.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---HHHhh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~---~~~LR 510 (680)
.|+++||+-.||+ ++.+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|++||.++...+ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 368999999999999999999999999999999999999999999999999998888 66778
Q ss_pred ccEEEEccCCcCc-cccHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChH
Q 005740 511 EKIGFVGQEPQLL-QMDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 576 (680)
Q Consensus 511 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~~-------------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGG 576 (680)
++||+++|++-|- .-|+.+|+..|.-. ..+..+..+|++..|+.|....- ..+||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 9999999999998 56999999988411 11234567788888887765431 1379999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~ 655 (680)
|+||+||||||..+|+|++=|||+|+|||++.++|++.|+++.++ .|.|+|+.-|.+...++ ||||+=|++|||+-.
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~--~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE--DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 68999999999999865 999999999999999
Q ss_pred cChHHHhhc--CcHHHH
Q 005740 656 GNHAELLHK--GRLYAK 670 (680)
Q Consensus 656 Gth~eLl~~--~g~Y~~ 670 (680)
|+.+||-+. +..|.+
T Consensus 230 g~~~el~~~~~~~iYg~ 246 (258)
T COG3638 230 GPASELTDEALDEIYGN 246 (258)
T ss_pred CChhhhhHHHHHHHhcc
Confidence 999996543 344543
No 120
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-46 Score=390.94 Aligned_cols=219 Identities=34% Similarity=0.574 Sum_probs=194.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC---ceEEECCeeCCCCCHHHhh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~di~~~~~~~LR 510 (680)
.|+++|++|+|++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++ |+|++||.++.+.+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999742 2469999999999999999999999999999999999999998 8999999999888888889
Q ss_pred ccEEEEccCC--cCccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 511 EKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 511 ~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
++||||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++..+.| ..||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 9999999998 4678999999998621 12333 34677888888887776665 4799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988532 3789999999999999999999999999999999998875
Q ss_pred c
Q 005740 664 K 664 (680)
Q Consensus 664 ~ 664 (680)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 121
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-46 Score=388.13 Aligned_cols=220 Identities=30% Similarity=0.482 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCC--CCCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT--DLDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~--~~~~ 506 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|++||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999997 4999999999997 4566
Q ss_pred HHhhccEEEEccCCcCccc-cHHHHHhcCCC-CCC--C----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHH
Q 005740 507 RWLREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~--s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr 578 (680)
..+|++|+||+|++.+|.. |++||+.++.. .+. + ++++.++++..++.+++.. ..+..+ ..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RLNDYP--SNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hhccCh--hhCCHHHH
Confidence 6789999999999999975 99999987521 011 1 2345666666666444321 112111 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK----KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999884 25899999999999765 99999999999999999
Q ss_pred hHHHhhcC
Q 005740 658 HAELLHKG 665 (680)
Q Consensus 658 h~eLl~~~ 665 (680)
++++.+..
T Consensus 232 ~~~~~~~~ 239 (253)
T PRK14267 232 TRKVFENP 239 (253)
T ss_pred HHHHHhCC
Confidence 99998653
No 122
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-46 Score=379.26 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999998763 367788999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|. .|++||+.++.. ... .++++.++++..++.++..+.| ..||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999987 499999987421 011 2345677788888776655433 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eL 661 (680)
.+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988642 26899999999999865 999999999999999998874
No 123
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-46 Score=377.69 Aligned_cols=212 Identities=31% Similarity=0.564 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+|+|.++ +||+||||+|++|+.+||+||+|||||||+|+++|+.+|++|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999742 59999999999999999999999999999999999999999999999998876544 6789
Q ss_pred EEEccCC---cCccccHHHHHhcCCCCC---------CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 514 GFVGQEP---QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 514 ~~V~Qd~---~LF~gTI~eNI~~g~~~~---------~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
|||||.. +=|.-||+|=+.+|+.+. .+.+++.+|++.+++.++..+ .+| .|||||+||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~--~LSGGQ~QRV 148 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG--ELSGGQKQRV 148 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc--ccCcHHHHHH
Confidence 9999965 467889999999985221 134889999999999998643 333 5999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~e 660 (680)
.|||||+.||++|+|||||+++|+.++..|.+.|+++++ +|||+++|+|.|+.+.. ||+|+.|+ ++++..|+.+|
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhh
Confidence 999999999999999999999999999999999999985 38999999999999866 99999995 67788999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
.+..
T Consensus 225 ~~~~ 228 (254)
T COG1121 225 VLTE 228 (254)
T ss_pred ccCH
Confidence 8864
No 124
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=385.64 Aligned_cols=217 Identities=31% Similarity=0.519 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 586 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARA 586 (680)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +..... .+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999995 799999987621 0112 223344444444321 001122 3799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
++++|++|||||||++||+++.+.+.+.|+++.++ .|+|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE--LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999988532 3789999999999765 5999999999999999999999764
No 125
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=386.71 Aligned_cols=219 Identities=29% Similarity=0.499 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCCHHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~~~~~ 508 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|++||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3699999999999999999999999999999999999984 6999999999999888889
Q ss_pred hhccEEEEccCCcCc-cccHHHHHhcCCCC-C--CC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 509 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D--VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~-~--~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
+|+.|+||+|++.+| +.|++||+.++... . .. ++++.++++..++.+.+. ..+++.+ ..||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~--~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA--GKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc--ccCCHHHHHH
Confidence 999999999999755 68999999876311 1 11 345667777777654332 1233332 3699999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999874 3689999999999985 59999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.+.
T Consensus 231 ~~~~~ 235 (250)
T PRK14247 231 EVFTN 235 (250)
T ss_pred HHHcC
Confidence 99865
No 126
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-46 Score=377.96 Aligned_cols=204 Identities=27% Similarity=0.467 Sum_probs=178.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ .++|+|+||++++| .+||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998877 77899999
Q ss_pred EEccCCcCccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|.+ |++||+.+... .+.+ ++++.++++..++.++....| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999987411 0111 345677788888766543322 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998852 489999999999986 59999999999999876
No 127
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.5e-46 Score=408.18 Aligned_cols=223 Identities=24% Similarity=0.429 Sum_probs=197.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g~~~---------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|||+|++.+ |+.|++||+.+|..+ ..+++.+.++++..++.++..+.+ ..||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 999999997 689999999987421 122456788899998887764432 3699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+++|+||||||||++||+.+...+.+.|+++.+ +++|+|+++|+++.+ +.||||++|++|++++.|+++|++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999863 378999999999999 559999999999999999999988
Q ss_pred hcCcHHHHHH
Q 005740 663 HKGRLYAKLV 672 (680)
Q Consensus 663 ~~~g~Y~~L~ 672 (680)
.. ....+++
T Consensus 228 ~~-~~l~~~~ 236 (402)
T PRK09536 228 TA-DTLRAAF 236 (402)
T ss_pred Cc-HHHHHHh
Confidence 64 3444444
No 128
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.4e-46 Score=379.38 Aligned_cols=208 Identities=32% Similarity=0.499 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---hh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---LR 510 (680)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 146999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -ccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 511 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 511 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++++...+.| ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 68999999999995 699999987421 0112 223455555555544433322 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEE
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 653 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Iv 653 (680)
|||++++|+||||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..||+|++|++|+|+
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999988532 368999999999999999999999999986
No 129
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-46 Score=389.12 Aligned_cols=222 Identities=31% Similarity=0.507 Sum_probs=191.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|+++ .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 24699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++. ++..|+++|+.++... ..+ ++++.++++..++.++..+.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP---------NALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 5567899999886311 122 234556667766655443322 3799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
++.+|++|||||||++||+.+.+.+.+.|+++.++ .++|+|+|||+++.+..||+|++|++|+|++.|+++++.....
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 234 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE--HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAE 234 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCHH
Confidence 99999999999999999999999999999987532 3689999999999998999999999999999999999977543
Q ss_pred H
Q 005740 667 L 667 (680)
Q Consensus 667 ~ 667 (680)
.
T Consensus 235 ~ 235 (269)
T PRK13648 235 E 235 (269)
T ss_pred H
Confidence 3
No 130
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-46 Score=383.58 Aligned_cols=217 Identities=29% Similarity=0.459 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC------CCCHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT------DLDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~------~~~~~ 507 (680)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999964 36999999999999999999999999999999999999999999999999873 23456
Q ss_pred HhhccEEEEccCCcCcc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
.+|++|+||+|++.+|. .|++|||.++.. ...+ .+++.++++..++.+++.+.| ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 78899999999999996 499999975311 0122 233455555555555544433 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+++...+.+.|+++.+ +++|+|++||++..+.. ||+|++|++|++++.|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998853 37899999999999865 9999999999999999999
Q ss_pred HHhhcC
Q 005740 660 ELLHKG 665 (680)
Q Consensus 660 eLl~~~ 665 (680)
++.+..
T Consensus 227 ~~~~~~ 232 (242)
T PRK11124 227 CFTQPQ 232 (242)
T ss_pred HhcCcc
Confidence 986543
No 131
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.8e-46 Score=398.38 Aligned_cols=226 Identities=29% Similarity=0.452 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCC----------CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 005740 434 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 503 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~----------~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 503 (680)
-|+++||+++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---hhccEEEEccCC--cCc-cccHHHHHhcCC---CCCCCHHH----HHHHHHHhcHH-HHHHcCCCCcccccC
Q 005740 504 LDIRW---LREKIGFVGQEP--QLL-QMDIKSNIMYGC---PKDVKNED----IEWAAKQAYVH-EFILSLPCGYETLVD 569 (680)
Q Consensus 504 ~~~~~---LR~~I~~V~Qd~--~LF-~gTI~eNI~~g~---~~~~s~ee----i~~A~~~a~l~-dfI~~LP~G~dT~vg 569 (680)
++.++ +|++|+||+|+| .|| ..||.|||.++. .++.+.++ +.++++.+++. ++..+.|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 87654 678999999998 477 689999997531 11234433 34445555542 2222222
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe
Q 005740 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 648 (680)
Q Consensus 570 e~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~ 648 (680)
..||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.++ .+.|+|+|||+++.+.. ||+|+||+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 379999999999999999999999999999999999999999999998642 37899999999999976 99999999
Q ss_pred CCEEEEecChHHHhhc-CcHHHH
Q 005740 649 DGRIIEVGNHAELLHK-GRLYAK 670 (680)
Q Consensus 649 ~G~Ive~Gth~eLl~~-~g~Y~~ 670 (680)
+|+|+|.|+.++++++ ...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999875 334544
No 132
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.9e-46 Score=405.27 Aligned_cols=215 Identities=32% Similarity=0.489 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.+.+.. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
+||+|++.|| +.|++|||.|+.. ...+ ++++.++++..++.++..+.|. .||||||||+||||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---------~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---------QLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---------hCCHHHHHHHHHHHHH
Confidence 9999999999 5699999999732 1122 3457788888899888887774 6899999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+++|++|+||||||+||..+...+.+.|+++.++ .|.|+|+|||++..+. .||+|++|++|+|++.|++++++++
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998653 3789999999999864 5999999999999999999999875
No 133
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.2e-46 Score=402.81 Aligned_cols=215 Identities=30% Similarity=0.492 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+. .|+.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3899999999974 369999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-----CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
+||+|++.||. .|++|||.|+... ..+ ++++.++++..++.++..+.| ..||||||||++|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999996 6999999997320 122 345667777777776665554 3699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+++|++|+||||||+||+.+.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|+|++.|+++|++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998642 37899999999998655 9999999999999999999998
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
++
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 75
No 134
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-46 Score=376.91 Aligned_cols=201 Identities=34% Similarity=0.552 Sum_probs=176.6
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ ...|++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 478999999741 469999999999999999999999999999999999999999999999998864 467889999
Q ss_pred EccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 516 VGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 516 V~Qd~--~LF~gTI~eNI~~g~~~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
|+|++ .+|..|++||+.++... ...++++.++++..++.++..+.|. .||||||||++||||++++|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL---------SLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch---------hCCHHHHHHHHHHHHHHhCCC
Confidence 99998 47889999999986321 1224578888888888777665553 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 653 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv 653 (680)
+|||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999998853 37899999999999875 9999999999985
No 135
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.5e-46 Score=380.13 Aligned_cols=207 Identities=38% Similarity=0.516 Sum_probs=174.7
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH----h
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----L 509 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~----L 509 (680)
|+++||+++|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hccEEEEccCCcCccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 510 REKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|++++||+|++.+|.+ |++||+.++.. ...+ ++++.++++..+++++..+.| .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 6789999999999976 99999998631 1111 234555666665554443322 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
|||++.+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..||+|++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999998541 37899999999999989999999999975
No 136
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=389.92 Aligned_cols=221 Identities=31% Similarity=0.472 Sum_probs=188.8
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--C
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 504 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~ 504 (680)
.+.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||.++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3699999999999999999999999999999999999985 89999999999975 4
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 577 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~--s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQ 577 (680)
+...+|+.|+||+|++.+|..|++||+.++.. .+. + ++++.++++..++.+++... ++..+ ..|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~--~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR---LHEPG--TGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH---hhCCc--ccCCHHH
Confidence 56678999999999999999999999987621 011 1 34567777777776544311 11111 3799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999884 3589999999999985 58999999999999999
Q ss_pred ChHHHhhc
Q 005740 657 NHAELLHK 664 (680)
Q Consensus 657 th~eLl~~ 664 (680)
+++++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14235 245 DTEKMFTN 252 (267)
T ss_pred CHHHHHhC
Confidence 99999854
No 137
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-46 Score=389.25 Aligned_cols=216 Identities=29% Similarity=0.538 Sum_probs=188.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-HHHhhccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-~~~LR~~I 513 (680)
|+++||+|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 246999999999999999999999999999999999999999999999999998775 46788999
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 514 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+||+|++. ++..|++|||.++... ..+ ++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 6788999999986211 122 344566677777766654433 3699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
++++|+||||||||++||+.+...+.+.|+++.+ +|+|+|++||++..+..||+|++|++|++++.|+.+++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 37899999999999999999999999999999999998654
No 138
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-46 Score=395.23 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--------
Q 005740 434 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 503 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-------- 503 (680)
.|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997531 1359999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHhhccEEEEccCC--cCccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHH-HHHHc
Q 005740 504 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVH-EFILS 559 (680)
Q Consensus 504 ----------------~~~~~LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~-dfI~~ 559 (680)
.+...+|+.||||+|+| .+|..|++|||.|+.. ...+. +++.++++..++. ++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13467899999999986 6899999999998731 12333 3355566666553 33332
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-
Q 005740 560 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI- 638 (680)
Q Consensus 560 LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti- 638 (680)
-| ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ .|+|+|+|||++..+
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL 229 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence 22 37999999999999999999999999999999999999999999998863 379999999999876
Q ss_pred hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 639 KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 639 ~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+.||||++|++|+|++.|+.+++.++
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcC
Confidence 56999999999999999999998765
No 139
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4e-46 Score=382.69 Aligned_cols=215 Identities=34% Similarity=0.552 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC--CHHHhhcc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~--~~~~LR~~ 512 (680)
|+++||+++|++ +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|++||.++.+. +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999964 3699999999999999999999999999999999999999999999999999864 34677889
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+...+.| ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 999999999885 699999988621 11222 23444555555544443322 379999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|++++|++|||||||++||+++...+.+.|+++.+ +++|+|+|||++..+.. ||+|++|++|++++.|+++++++.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998753 37899999999999865 999999999999999999998764
No 140
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.9e-46 Score=376.70 Aligned_cols=206 Identities=33% Similarity=0.555 Sum_probs=178.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 579999999974 3699999999999999999999999999999999999999999999999999776543 57899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+.| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999995 699999987621 1112 234566677777776655544 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999988542 36899999999998775 9999999999999876
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-46 Score=386.10 Aligned_cols=224 Identities=25% Similarity=0.436 Sum_probs=194.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCcCccc-cHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~---------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
||+|++.+|.+ |+.||+.++... +..++++.++++..++.++..+.| ..||||||||++||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFLA 150 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHHH
Confidence 99999999876 999999986210 112345677777777766554432 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
||++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998753 3789999999999976 599999999999999999999875
Q ss_pred cCcHHHHHHHH
Q 005740 664 KGRLYAKLVKR 674 (680)
Q Consensus 664 ~~g~Y~~L~~~ 674 (680)
. ..+.+++..
T Consensus 228 ~-~~~~~~~~~ 237 (255)
T PRK11231 228 P-GLLRTVFDV 237 (255)
T ss_pred H-HHHHHHhCC
Confidence 3 455665543
No 142
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.1e-46 Score=375.20 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=181.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999964 4699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
||+|++.+| +.|++||+.++.. ...+++++.++++..++.+...+.| ..||||||||++||||++++|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999888 6899999987521 1235677888889988877665432 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
+|||||||++||+.+.+.+.+.|+++.+ +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998753 37899999999998865 9999999999999876
No 143
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-46 Score=381.36 Aligned_cols=219 Identities=25% Similarity=0.400 Sum_probs=181.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~ 512 (680)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 46999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred EEEEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~ 590 (680)
++||+|++.+|.+ |++||+.++. ...+.++..+.+ .+.+..++...++.-.. ..||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~-~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGG-FFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhh-hccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999984 9999999863 222222222211 12222221111111112 47999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+||||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+ +.||+|++|++|+|++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998753 378999999999865 56999999999999999999999753
No 144
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=385.99 Aligned_cols=220 Identities=31% Similarity=0.484 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~~ 506 (680)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999999999999997 489999999999864 445
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.++||+|++.+|..|++||+.++.. ... .++++.++++..++++.. +..++..+ .+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~--~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDRNA--QAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhccCh--hhCCHHHHHH
Confidence 678899999999999999999999987621 011 123455566666653211 11122211 4799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 35899999999999765 9999999999999999999
Q ss_pred HHhhcC
Q 005740 660 ELLHKG 665 (680)
Q Consensus 660 eLl~~~ 665 (680)
++....
T Consensus 232 ~~~~~~ 237 (251)
T PRK14251 232 EMFIAP 237 (251)
T ss_pred HHHhCC
Confidence 997653
No 145
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-46 Score=378.97 Aligned_cols=208 Identities=34% Similarity=0.523 Sum_probs=178.6
Q ss_pred EEEEEEEEEcCCCCC-CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 435 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~-~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
|+++||+++|++... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 578999999974111 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
+||+|++.+|. .|++||+.++.. ... .++++.++++..++.++..+.| ..||||||||++||||+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999997 799999987621 111 2345677777777776665554 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEe--CCEEEEecCh
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--DGRIIEVGNH 658 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~--~G~Ive~Gth 658 (680)
+++|++|||||||++||+.+.+.+.+.|+++.++ .++|+|+|||+++.+. .||+|++|+ +|+|+++++-
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE--TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999987532 3689999999999775 599999999 7999998874
No 146
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.3e-46 Score=387.21 Aligned_cols=226 Identities=22% Similarity=0.363 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hhh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~LR 510 (680)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877653 457
Q ss_pred ccEEEEccCCcCccc-cHHHHHhcCCCC--CCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~--~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
++|+||+|++.+|.+ |++||+.++... ..+. +++.++++..++.+.....| ..||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP---------SELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 889999999999976 999999875211 1222 23444555555444332221 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||++++|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA--LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999988532 36899999999998865 9999999999999999999998
Q ss_pred hcC-cHHHHHHH
Q 005740 663 HKG-RLYAKLVK 673 (680)
Q Consensus 663 ~~~-g~Y~~L~~ 673 (680)
++. ..++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 753 34555554
No 147
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.8e-46 Score=385.43 Aligned_cols=227 Identities=30% Similarity=0.437 Sum_probs=186.1
Q ss_pred EEEEEEEEEcCCC------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH
Q 005740 435 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 435 I~f~nVsF~Y~~~------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~ 508 (680)
|+++||+|+|++. .++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1356999999999999999999999999999999999999999999999999998877654
Q ss_pred ---hhccEEEEccCCc--Cc-cccHHHHHhcCCC--CCC----CHHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCCh
Q 005740 509 ---LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSG 575 (680)
Q Consensus 509 ---LR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~--~~~----s~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSG 575 (680)
+|+.|+||+|++. ++ ..|++|||.++.. ... .++++.++++..++. +.. +..+ ..|||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~--~~LSg 153 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA-------DKLP--RQLSG 153 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-------hCCh--hhCCH
Confidence 6788999999983 44 4799999975410 011 223445555555442 111 1111 37999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEE
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 654 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive 654 (680)
|||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||++..+. .||+|++|++|++++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999988642 3789999999999997 599999999999999
Q ss_pred ecChHHHhhc-CcHHHHHH
Q 005740 655 VGNHAELLHK-GRLYAKLV 672 (680)
Q Consensus 655 ~Gth~eLl~~-~g~Y~~L~ 672 (680)
.|+++++++. +..++.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999874 44555554
No 148
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.7e-46 Score=376.14 Aligned_cols=203 Identities=36% Similarity=0.546 Sum_probs=177.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~LR~ 511 (680)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999953 24699999999999999999999999999999999999999999999999999887643 5788
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
.++|++|++.+|. .|++||+.++.. ++..++++.++++..++.++..+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999995 799999987521 1122456777888888877665554 369999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
|++++|++|||||||++||+++...+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998753 37899999999999886 99999999985
No 149
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.7e-46 Score=378.91 Aligned_cols=216 Identities=26% Similarity=0.479 Sum_probs=180.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I 513 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999974 369999999999999999999999999999999999999999999999999988876654 5789
Q ss_pred EEEccCCcCccc-cHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcc
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~ 589 (680)
+|++|++.+|.+ |++||+.++.. .....++..+ .+++.+..+ |++..... ..||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999997631 1122222111 122333333 34333333 3799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhh
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
+|++|||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999998753 3789999999997665 599999999999999999999875
No 150
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=383.60 Aligned_cols=220 Identities=31% Similarity=0.541 Sum_probs=186.7
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~~ 505 (680)
|.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999974 3699999999999999999999999999999999999873 69999999999975 45
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCC-CC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
...+|+.|+||+|++.+|..|++||+.++.. .. ..++++.++++.+++.+.+..+ .+..+ ..|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~~--~~LS~G~~q 153 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR---LKKSA--LGLSGGQQQ 153 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH---HhcCC--CCCCHHHHH
Confidence 6678999999999999999999999998621 11 1234566667777665444311 12211 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDT 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 36899999999998755 999999999999999999
Q ss_pred HHHhhc
Q 005740 659 AELLHK 664 (680)
Q Consensus 659 ~eLl~~ 664 (680)
+++...
T Consensus 230 ~~~~~~ 235 (250)
T PRK14240 230 VDLFTN 235 (250)
T ss_pred HHHHhC
Confidence 998754
No 151
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-46 Score=403.29 Aligned_cols=215 Identities=31% Similarity=0.491 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
+||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 599999998731 1122 245677778777776665554 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+++|++||||||||+||+.+.+.+.+.|+++.++ .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988542 3789999999999875 5999999999999999999999864
No 152
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.1e-46 Score=375.04 Aligned_cols=203 Identities=38% Similarity=0.624 Sum_probs=175.9
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+++||+++|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 2469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EccCC--cCccccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 516 VGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 516 V~Qd~--~LF~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
++|++ .+++.|++||+.++.. ...+ ++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99998 4678999999987521 1122 234566677777766554433 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998863 37899999999999987 99999999985
No 153
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-45 Score=381.46 Aligned_cols=217 Identities=34% Similarity=0.523 Sum_probs=180.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--------H
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------I 506 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~--------~ 506 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999974 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhccEEEEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 581 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRI 581 (680)
..+|+.++||+|++.+|. .|++||+.++.. .....++..+. +.+.++.+ |++..... ..||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999885 799999987511 11222222111 12233322 23222222 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~e 660 (680)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998853 37899999999999865 99999999999999999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
+.+.
T Consensus 231 ~~~~ 234 (250)
T PRK11264 231 LFAD 234 (250)
T ss_pred HhcC
Confidence 8764
No 154
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=383.30 Aligned_cols=218 Identities=30% Similarity=0.458 Sum_probs=185.1
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC--------
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 504 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~-------- 504 (680)
+.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999974 3699999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHhhccEEEEccCCcCcc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCC
Q 005740 505 -----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 572 (680)
Q Consensus 505 -----~~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~ 572 (680)
....+|+.++||+|++.+|. .|++||+.++.. .... ++++.++++..++.++.. +.. -..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~~--~~~ 152 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ------GKY--PVH 152 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh------hCC--ccc
Confidence 23567889999999999997 599999987510 0122 234555566665544431 111 137
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 573 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ .|+|+|+|||+++.+.. ||||++|++|+
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998853 37999999999999986 99999999999
Q ss_pred EEEecChHHHhhc
Q 005740 652 IIEVGNHAELLHK 664 (680)
Q Consensus 652 Ive~Gth~eLl~~ 664 (680)
+++.|+++++.+.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999999864
No 155
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=385.95 Aligned_cols=216 Identities=28% Similarity=0.436 Sum_probs=184.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCCHHHhhcc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~~~~~~LR~~ 512 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred EEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 513 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 513 I~~V~Qd~~--LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
|+||+|++. +|..|+.||+.++.. ...+. +++.++++..++.++..+ .+ ..||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-------PI--QCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-------Cc--hhCCHHHHHHHHHHH
Confidence 999999986 678899999987511 12232 334556666676555322 11 379999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|+|++.|+++++..+
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998853 3689999999999985 4999999999999999999998765
Q ss_pred C
Q 005740 665 G 665 (680)
Q Consensus 665 ~ 665 (680)
.
T Consensus 227 ~ 227 (271)
T PRK13638 227 T 227 (271)
T ss_pred h
Confidence 4
No 156
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.6e-46 Score=401.09 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=191.1
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC--ceEEECCeeCCCCCHHHh
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~--G~I~idG~di~~~~~~~L 509 (680)
.+.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 367999999999964 369999999999999999999999999999999999999999 999999999987665 4
Q ss_pred hccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 510 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
++.|+||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.|. +||||||||+||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvaL 148 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---------QLSGGMQQRIAI 148 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---------hCCHHHHHHHHH
Confidence 678999999999995 599999998731 1123 2456777888888777666664 699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+++|++|+||||||+||+.+.+.+.+.|+++.++ ..|.|+|+|||.++.+. .||+|+||++|+|++.|+++|+.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE-LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988642 12689999999999865 59999999999999999999998
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
++
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 75
No 157
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.8e-46 Score=374.63 Aligned_cols=204 Identities=32% Similarity=0.545 Sum_probs=176.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH---HHhhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~---~~LR~ 511 (680)
|+++||+++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999742 469999999999999999999999999999999999999999999999999987764 35788
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 9999999999997 599999987621 0112 345667777777766555444 369999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
|++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||++..+.. ||+|++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998853 37899999999999985 999999999975
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-46 Score=384.78 Aligned_cols=219 Identities=30% Similarity=0.463 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~--~~~ 506 (680)
-|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|++||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 369999999999999999999999999999999999997 3 69999999999864 455
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.|+||+|++.+|.+|++||+.++... . .++ +++.++++..++.+++..+ +++.+ ..||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~~~--~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHTQA--LSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhCCc--ccCCHHHHHH
Confidence 6788999999999999999999999886211 1 122 2345566666665544221 12211 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK----EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999984 3589999999999976 59999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98764
No 159
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-45 Score=378.39 Aligned_cols=211 Identities=26% Similarity=0.466 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I 513 (680)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 369999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCCCC-------------CHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHH
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPKDV-------------KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 577 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~-------------s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQ 577 (680)
+|++|++.+|.+ |++||+.++...+. .++++.++++..+ ++..... ..|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG-----------LADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHH
Confidence 999999999986 99999998632110 1122333333333 3322322 3799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
|||++||||++++|++||||||||+||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA----GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh----cCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999984 35899999999999875 9999999999999999
Q ss_pred ChHHHhh
Q 005740 657 NHAELLH 663 (680)
Q Consensus 657 th~eLl~ 663 (680)
+++++..
T Consensus 225 ~~~~~~~ 231 (242)
T TIGR03411 225 SLDQVQA 231 (242)
T ss_pred CHHHHhc
Confidence 9999875
No 160
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-45 Score=376.37 Aligned_cols=213 Identities=27% Similarity=0.431 Sum_probs=179.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~I 513 (680)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999974 36999999999999999999999999999999999999999999999999998887655 46789
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCC-CCCHHH-HHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPK-DVKNED-IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~-~~s~ee-i~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
+|++|++.+|.. |++||+.++... ..++++ ..++++..+ +++..... ..||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 999999986321 111122 222333322 11111222 379999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
++|++|||||||++||+.+.+.+.+.|.++.++ .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999999987642 36899999999999985 9999999999999999999983
No 161
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-45 Score=375.44 Aligned_cols=211 Identities=28% Similarity=0.417 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCC-CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---h
Q 005740 434 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~-~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---L 509 (680)
-|+++||+++|++... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 25999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hccEEEEccCCcCccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 510 -REKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 -R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
++.++||+|++.+|.+ |++||+.++.. ... .++++.++++..++.++..+.|. .||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA---------QLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh---------hCCHHHHHHHH
Confidence 3689999999999974 99999986421 111 23467777888888777665553 69999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEe
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~ 655 (680)
|||||+.+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..||+|++|++|+|+|.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999987532 36899999999999999999999999999875
No 162
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=382.27 Aligned_cols=219 Identities=33% Similarity=0.481 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~~--~~ 506 (680)
-|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++ | ++|+|++||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 369999999999999999999999999999999999954 6 599999999999653 45
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.|+||+|++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+..+ .+..+ ..||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~--~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR---LHDSA--LGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH---HhcCc--ccCCHHHHHH
Confidence 678899999999999999999999987521 01 1133455566677665443211 11111 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999874 3589999999999875 59999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.+.
T Consensus 233 ~~~~~ 237 (252)
T PRK14239 233 QMFMN 237 (252)
T ss_pred HHHhC
Confidence 99864
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=388.88 Aligned_cols=222 Identities=30% Similarity=0.512 Sum_probs=182.6
Q ss_pred cccEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----C-
Q 005740 432 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L- 504 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----~- 504 (680)
.+.|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997532 1359999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHhhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHH----HHHHHhcHHHHHHcCCCCc-ccccCCCCCChH
Q 005740 505 DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGY-ETLVDDDLLSGG 576 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~eei~----~A~~~a~l~dfI~~LP~G~-dT~vge~~LSGG 576 (680)
+...+|+.|+||+|++ .+|..|++|||.++.. ...+.++.. ++++.. .||.++ +..+ ..||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~-------~L~~~~~~~~~--~~LS~G 154 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLV-------QLPEDYVKRSP--FELSGG 154 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCChhHhcCCh--hhCCHH
Confidence 4567889999999998 5788899999998631 122333332 222222 233222 1111 379999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~ 655 (680)
||||++||||++.+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999988542 3789999999999875 5999999999999999
Q ss_pred cChHHHhhc
Q 005740 656 GNHAELLHK 664 (680)
Q Consensus 656 Gth~eLl~~ 664 (680)
|+++++.+.
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 999988654
No 164
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=387.46 Aligned_cols=218 Identities=29% Similarity=0.479 Sum_probs=182.2
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----CHHH
Q 005740 435 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW 508 (680)
Q Consensus 435 I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~----~~~~ 508 (680)
|+++||+|+|+++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999999764 4567
Q ss_pred hhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHHHH----HHHHHHhcHHH-HHHcCCCCcccccCCCCCChHHHHH
Q 005740 509 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 509 LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~eei----~~A~~~a~l~d-fI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
+|+.|+||+|++ .+|+.|++|||.++.. ...+.++. .++++..++.+ +. +..+ ..||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~--~~LSgG~~qr 153 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF-------EKNP--FELSGGQMRR 153 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhh-------hCCc--ccCCHHHHHH
Confidence 899999999998 6889999999987621 12334333 23333333321 11 1111 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+++.+.+.+.|+++.+ .++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998853 3789999999999885 49999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.+.
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 98764
No 165
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=384.26 Aligned_cols=219 Identities=30% Similarity=0.485 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~--~~ 506 (680)
.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3699999999999999999999999999999999999985 899999999998653 34
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
..+|+.++||+|++.+|..|++||+.++.. ...+. +++.++++.+++.+.+ ++.+++.+ ..||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~--~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET---SDRLKSPA--LSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch---hhhhcCCh--hhCCHHHHHHH
Confidence 567889999999999999999999987621 11222 2355566666654322 11223322 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~e 660 (680)
+|||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|++++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK----KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999884 36899999999999855 99999999999999999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
+.+.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 9754
No 166
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-45 Score=370.56 Aligned_cols=204 Identities=34% Similarity=0.529 Sum_probs=179.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCcCccc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|.+ |++||+.++.... .+++++.++++..++.++..+.|. .||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---------ELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999975 9999998863211 234568888999998887776663 69999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999988532 37899999999999865 9999999999999865
No 167
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=381.41 Aligned_cols=207 Identities=32% Similarity=0.436 Sum_probs=182.2
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999964 36999999999999999999999999999999999999999999999998763 56789
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
++||+|++.+|. .|++||+.++. ....++++.++++..++.++..+.| ..||||||||++|||||+++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGL-KGQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRP 152 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcc-cchHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999997 69999999873 2234567788888888876554433 379999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++|||||||++||+.+.+.+.+.|.++.++ .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999987532 3689999999999875 59999999999999998865
No 168
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-45 Score=372.27 Aligned_cols=209 Identities=27% Similarity=0.445 Sum_probs=187.0
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH----HHhhc
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 511 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~----~~LR~ 511 (680)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999853 479999999999999999999999999999999999999999999999999877653 34677
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~ 589 (680)
.++|++|++.+|+.|++||+.++. ..++++..++++..++.+++..+|.|++|.++. ..||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999873 345667788899999999999999999999886 4999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH--HHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCE
Q 005740 590 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 651 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~--~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~ 651 (680)
+|++|||||||++||+.+...+.+ .++.+.+ .++|+|++||+++.+..||+|++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 4554432 3689999999999999999999999984
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=384.82 Aligned_cols=219 Identities=30% Similarity=0.441 Sum_probs=187.8
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--C
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 504 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~ 504 (680)
...|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.+ .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCCC-CC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 576 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGG 576 (680)
+...+|+.|+||+|++.+|..|++|||.++... .. .++++.++++..++.+++.. ..+. ..||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHH
Confidence 466789999999999999999999999986311 11 13445666777777555432 2222 479999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~ 655 (680)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK----KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999884 3589999999999875 5999999999999999
Q ss_pred cChHHHhhc
Q 005740 656 GNHAELLHK 664 (680)
Q Consensus 656 Gth~eLl~~ 664 (680)
|+.+++.+.
T Consensus 244 g~~~~~~~~ 252 (267)
T PRK14237 244 DKTRNIFTN 252 (267)
T ss_pred CCHHHHhcC
Confidence 999999864
No 170
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-45 Score=391.74 Aligned_cols=230 Identities=30% Similarity=0.475 Sum_probs=189.5
Q ss_pred cEEEEEEEEEcCCCC-------CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH
Q 005740 434 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-------~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~ 506 (680)
-|+++||+++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2469999999999999999999999999999999999999999999999999998875
Q ss_pred H---HhhccEEEEccCCc--Ccc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCC
Q 005740 507 R---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 574 (680)
Q Consensus 507 ~---~LR~~I~~V~Qd~~--LF~-gTI~eNI~~g~--~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LS 574 (680)
+ .+|++|+||+|++. |+. -||.+|+.... ....+ .+++.++++.+++.+ ++++... ..||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p--~~LS 156 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP--HMFS 156 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC--ccCC
Confidence 4 56889999999984 554 58999986421 00122 345666777776642 2233333 3699
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv 653 (680)
||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.++ .|.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998642 37899999999999975 9999999999999
Q ss_pred EecChHHHhhc-CcHHH-HHHH
Q 005740 654 EVGNHAELLHK-GRLYA-KLVK 673 (680)
Q Consensus 654 e~Gth~eLl~~-~g~Y~-~L~~ 673 (680)
|.|+.++++++ ...|. .|+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 99999999975 23354 4443
No 171
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-45 Score=373.55 Aligned_cols=215 Identities=32% Similarity=0.496 Sum_probs=188.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ .+ .|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 22 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCcCccc-cHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|.+ |++||+.++..+. ..++++.++++..++.+++.+.|. .||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---------QLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999975 9999998752111 224568889999999888877764 69999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcCcH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRL 667 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~g~ 667 (680)
++|++|||||||++||+++.+.+.+.|+++.++ .++|+|++||++..+.. ||+|++|++|++++.|+++++......
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~~ 223 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKAS 223 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChhH
Confidence 999999999999999999999999999987532 36899999999999865 999999999999999999999876533
No 172
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=385.38 Aligned_cols=219 Identities=31% Similarity=0.507 Sum_probs=188.3
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--C
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 504 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~ 504 (680)
.+.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|++||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999964 3699999999999999999999999999999999999984 89999999999875 4
Q ss_pred CHHHhhccEEEEccCCcCccccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChH
Q 005740 505 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 576 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGG 576 (680)
+...+|+.++||+|++.+|.+|++||+.++.. ... .++++.++++.+++.+++.. ..+. ..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 56678999999999999999999999987621 111 12446677777777654432 2222 479999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~ 655 (680)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK----SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999984 3589999999999875 5999999999999999
Q ss_pred cChHHHhhc
Q 005740 656 GNHAELLHK 664 (680)
Q Consensus 656 Gth~eLl~~ 664 (680)
|+++++.+.
T Consensus 249 g~~~~~~~~ 257 (272)
T PRK14236 249 GDTDTLFTS 257 (272)
T ss_pred CCHHHHhcC
Confidence 999999865
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-46 Score=378.28 Aligned_cols=214 Identities=30% Similarity=0.479 Sum_probs=188.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|++||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999974 369999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEccCCcCccc-cHHHHHhcCCC-----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~-----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|.+ |++||+.++.. +...++++.++++..++++++.+.| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999965 99999987521 1122456777888888887777666 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
++|++|||||||++||+.+.+.+.+.|+++.++ .++|+|+++|++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE--LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999988531 26899999999999865 999999999999999999999865
No 174
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=401.64 Aligned_cols=212 Identities=36% Similarity=0.541 Sum_probs=182.8
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh----hccEEEEccCCcCcc-c
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-M 525 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L----R~~I~~V~Qd~~LF~-g 525 (680)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.|+.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998887654 468999999999995 6
Q ss_pred cHHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCC
Q 005740 526 DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 600 (680)
Q Consensus 526 TI~eNI~~g~~-~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaT 600 (680)
|++|||.++.. ... .++++.++++..++.++..+.|. +||||||||++|||||+.+|+||||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~---------~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD---------ELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc---------cCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999998621 011 23456778888888777666553 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhcC--cHHHHHHH
Q 005740 601 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG--RLYAKLVK 673 (680)
Q Consensus 601 SaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~--g~Y~~L~~ 673 (680)
|+||+.+.+.+++.|.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|++++++++. .+.++++.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~--~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAK--HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 999999999999999988532 3789999999999875 59999999999999999999998752 33444443
No 175
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.5e-45 Score=373.97 Aligned_cols=206 Identities=28% Similarity=0.453 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---hhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---LR~ 511 (680)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 246999999999999999999999999999999999999999999999999998876544 788
Q ss_pred cEEEEccCCcC-ccccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQL-LQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~L-F~gTI~eNI~~g~~-~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
.++||+|++.+ +..|++||+.++.. ...+++ ++.++++..++.++..+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 99999999987 47899999988621 122332 3556667777666554433 379999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEE
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 654 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive 654 (680)
|++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998853 36899999999999976 89999999999863
No 176
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=379.51 Aligned_cols=221 Identities=29% Similarity=0.467 Sum_probs=186.4
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCCC--
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL-- 504 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~~-- 504 (680)
.+.|+++||+|+|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|++||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 356999999999974 369999999999999999999999999999999999986 4 699999999999653
Q ss_pred CHHHhhccEEEEccCCcCcc-ccHHHHHhcCCCC-C-CC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHH
Q 005740 505 DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 577 (680)
Q Consensus 505 ~~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~-~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQ 577 (680)
+...+|+.|+||+|++.+|. .|++||+.++... . .+ ++++.++++..++.+++..+. ++ .-..|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~ 153 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL---KS--NAMELSGGQ 153 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hC--CcCcCCHHH
Confidence 45678999999999999997 6999999875210 1 11 234566777777655443211 11 114799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK----EKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----hCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999985 2479999999999985 59999999999999999
Q ss_pred ChHHHhhc
Q 005740 657 NHAELLHK 664 (680)
Q Consensus 657 th~eLl~~ 664 (680)
+++++...
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14256 230 ETKKIFTT 237 (252)
T ss_pred CHHHHHhC
Confidence 99999764
No 177
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2e-45 Score=381.14 Aligned_cols=214 Identities=26% Similarity=0.425 Sum_probs=186.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEccCCc-CccccHHHHHhcCCCCC---------CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 515 FVGQEPQ-LLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 515 ~V~Qd~~-LF~gTI~eNI~~g~~~~---------~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
|++|++. .+..|++||+.++..+. ..++++.++++..++.+...+.+ ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 9999985 45789999998863110 11234566667666655433322 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
||++.+|+++||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998853 3689999999999995 599999999999999999999875
No 178
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.9e-45 Score=372.96 Aligned_cols=213 Identities=35% Similarity=0.536 Sum_probs=172.7
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH---HHhh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~---~~LR 510 (680)
|+++||+|+|+++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997421 1269999999999999999999999999999999999999999999999999988774 6788
Q ss_pred ccEEEEccCC--cCc-cccHHHHHhcCCC---CCCCHHHHHHHHHHhcHHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 005740 511 EKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQKQRI 581 (680)
Q Consensus 511 ~~I~~V~Qd~--~LF-~gTI~eNI~~g~~---~~~s~eei~~A~~~a~l~dfI~~LP~G~d-T~vge--~~LSGGQrQRI 581 (680)
++++||+|++ .++ ..|++||+.++.. ....+++...++ ++.+..+ |++ ..... .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5899999986421 111122222111 1223332 222 12222 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
+||||++.+|++|||||||++||+++.+.+.+.|+++.++ .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999988531 2689999999999987 59999999999999875
No 179
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-45 Score=379.14 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=188.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEccCCcC-ccccHHHHHhcCCCCC-C----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQL-LQMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~L-F~gTI~eNI~~g~~~~-~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
|++|++.+ +..|++||+.++.... . .++++.++++..++.++..+.+ ..||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999987 6789999998863211 1 1334666777777765544332 379999999999999999
Q ss_pred ------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHH
Q 005740 589 ------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 589 ------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eL 661 (680)
++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 699999999999999999999999999988522 3689999999999886 5999999999999999999998
Q ss_pred hhc
Q 005740 662 LHK 664 (680)
Q Consensus 662 l~~ 664 (680)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 764
No 180
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.6e-45 Score=377.53 Aligned_cols=214 Identities=32% Similarity=0.514 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++|+|++ +++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999974 369999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEccCCcCccc-cHHHHHhcCCCC-CC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~-~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||||++.+|.+ |++||+.++... .. .++++.++++..++.++..+.+ .+|||||+||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 999999886310 11 1334555666666655544333 379999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
++|+++||||||++||.++++.+.+.|.++.++ .++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE--VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999987531 26899999999998755 999999999999999999999864
No 181
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=379.29 Aligned_cols=217 Identities=27% Similarity=0.481 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~--~~~ 506 (680)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999964 36999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCCC-----HHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~s-----~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
..+|+.++||+|++.+|..|++||+.++.. .... ++.+.++++..++.+++.. .... ..||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHH
Confidence 678999999999999999999999998621 0111 2334455555665544332 2222 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999873 36899999999999876 79999999999999999
Q ss_pred hHHHhhc
Q 005740 658 HAELLHK 664 (680)
Q Consensus 658 h~eLl~~ 664 (680)
.+++...
T Consensus 230 ~~~~~~~ 236 (251)
T PRK14249 230 TGEIFSR 236 (251)
T ss_pred HHHHHhC
Confidence 9998764
No 182
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.7e-45 Score=381.51 Aligned_cols=231 Identities=26% Similarity=0.458 Sum_probs=193.0
Q ss_pred cEEEEEEEEEcCCC------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH
Q 005740 434 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~ 507 (680)
-|+++||+++|++. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999999876666
Q ss_pred HhhccEEEEccCCc--Ccc-ccHHHHHhcCCC--CCC----CHHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHH
Q 005740 508 WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQ 577 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~--LF~-gTI~eNI~~g~~--~~~----s~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQ 577 (680)
..|+.|+||+|++. ++. -|+.+|+.++.. ... .++++.++++..++. +.....| ..|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP---------HMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc---------hhcCHHH
Confidence 77788999999985 443 489999875311 011 234567777777773 3332222 3699999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
|||++||||++++|++|||||||++||+++.+.+.+.|+++.++ .|+|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998542 36899999999999986 9999999999999999
Q ss_pred ChHHHhhc--CcHHHHHHHHh
Q 005740 657 NHAELLHK--GRLYAKLVKRQ 675 (680)
Q Consensus 657 th~eLl~~--~g~Y~~L~~~q 675 (680)
+++++.+. +..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 99999875 46677787654
No 183
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=400.03 Aligned_cols=216 Identities=27% Similarity=0.470 Sum_probs=188.9
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.++.+++. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 45999999999963 369999999999999999999999999999999999999999999999999987664 5789
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
||||+|++.||. .|++|||+|+.. ...+ ++++.++++..++.++..+.|. .||||||||+|||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---------~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---------QLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---------hCCHHHHHHHHHHHH
Confidence 999999999995 599999999742 1222 2456667777777666555553 699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+++|++|+||||||+||..+.+.+.+.|+++.++ .+.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999887643 378999999999986 55999999999999999999999875
No 184
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=381.20 Aligned_cols=217 Identities=31% Similarity=0.514 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC---CCC--CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~---y~p--~~G~I~idG~di~~~--~~ 506 (680)
.|+++||++.|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+ ++| ++|+|.+||.++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3699999999999999999999999999999999997 454 599999999999764 35
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
..+|+.|+||+|++.+|..|++||+.++.. ... .++++.++++..++.+++.. .... ..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHH
Confidence 678899999999999999999999987621 011 22345566666665444321 2222 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999984 3689999999999985 599999999999999999
Q ss_pred hHHHhhc
Q 005740 658 HAELLHK 664 (680)
Q Consensus 658 h~eLl~~ 664 (680)
++++.+.
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14245 229 TKKIFTN 235 (250)
T ss_pred HHHHhcC
Confidence 9999864
No 185
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=386.50 Aligned_cols=219 Identities=28% Similarity=0.479 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----CHH
Q 005740 434 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~----~~~ 507 (680)
.|+++||+++|++.. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 14699999999999999999999999999999999999999999999999998753 346
Q ss_pred HhhccEEEEccCC--cCccccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHHHH
Q 005740 508 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 508 ~LR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~ee----i~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
..|+.|+||+|++ .+|..|++|||.++.. ...+.++ +.++++..++. ++... .+ ..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-------~~--~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-------SP--FELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhC-------Cc--ccCCHHHHH
Confidence 7788999999998 5888999999987621 1233332 34444444442 22111 11 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth 658 (680)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ +|+|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998853 4789999999999875 5999999999999999999
Q ss_pred HHHhhc
Q 005740 659 AELLHK 664 (680)
Q Consensus 659 ~eLl~~ 664 (680)
+++.+.
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 998764
No 186
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.9e-45 Score=374.23 Aligned_cols=211 Identities=25% Similarity=0.444 Sum_probs=181.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.|
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEccCCcCccccHHHHHhcCCC--CC-CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~--~~-~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
+||+|++.+|..|++||+.++.. .. ..++++.++++..++.+ +.... ..||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999987421 11 12334445555555422 11222 379999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEe-CCEEEEecChH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA 659 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~-~G~Ive~Gth~ 659 (680)
++|++|||||||++||+.+.+.+.+.|+++.++ .++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999987542 3689999999999999999999994 77888999996
No 187
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=382.25 Aligned_cols=216 Identities=34% Similarity=0.522 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCCC--HH
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR 507 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~~~--~~ 507 (680)
=+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCC-CC------CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~------~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
.+|+.++||+|++.+|.+|++||+.++.. .+ ..++++.++++..++.+++. +.++. ..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67899999999999999999999987621 01 11334566667776654322 12222 47999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999884 36899999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 005740 658 HAELLHK 664 (680)
Q Consensus 658 h~eLl~~ 664 (680)
++++.+.
T Consensus 232 ~~~~~~~ 238 (251)
T PRK14244 232 TQEIFKN 238 (251)
T ss_pred HHHHhcC
Confidence 9999865
No 188
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=8.4e-46 Score=373.41 Aligned_cols=200 Identities=29% Similarity=0.552 Sum_probs=172.7
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 47899999964 36999999999999999999999999999999999999999999999998764 57889999
Q ss_pred EccCCcC---ccccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 516 VGQEPQL---LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 516 V~Qd~~L---F~gTI~eNI~~g~~~---------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|+|++.+ |..|++||+.++... ...++++.++++..++.++..+.| .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999987 678999999886321 012345777888888877655433 3699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
|||++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++| |++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998853 37899999999999865 9999999986 66655
No 189
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.4e-45 Score=389.64 Aligned_cols=216 Identities=27% Similarity=0.459 Sum_probs=184.9
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999998755 457899
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CCCCHHHH----HHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~eei----~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
||||||++.+|. .|++||+.|... ...+.++. .++++.. .|++..++.++ +||||||||++||||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~LS~G~~qrl~la~a 152 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKVG--ELSGGMKRRLTLARA 152 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCchh--hCCHHHHHHHHHHHH
Confidence 999999999985 799999986311 12333332 2333333 34445555554 699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|++||.++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999853 47899999999999865 999999999999999999999764
No 190
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=383.27 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CCHHHhhcc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--~~~~~LR~~ 512 (680)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. .+...+|+.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999973 2469999999999999999999999999999999999999999999999999852 334578899
Q ss_pred EEEEccCC--cCccccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 513 IGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 513 I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
|+||+|++ .+|..|+.|||.++.. ...+. +++.++++..++.++....| ..||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP---------HHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999997 5789999999988621 11222 34556666666654432221 369999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||++..+. .||+|++|++|++++.|+++++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998853 3789999999999987 5999999999999999999998764
No 191
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.9e-45 Score=389.01 Aligned_cols=215 Identities=30% Similarity=0.490 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. ...+|++|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHH----HHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s~eei----~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.+| ..|++||+.+... ...+.++. .++++..+ +++.+++.++ .||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~~--~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADVRVA--LLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhcCchh--hCCHHHHHHHHHHHHH
Confidence 9999999988 4799999975311 12333333 23333333 3334444443 6999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999853 47899999999999865 999999999999999999999764
No 192
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=380.28 Aligned_cols=218 Identities=23% Similarity=0.394 Sum_probs=191.2
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 369999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEEEccCCcCc-cccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 513 IGFVGQEPQLL-QMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~~g~~~---------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
|+||+|++.+| ..|++||+.++..+ +..++++.++++..++.++..+.| ..||||||||++
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHH
Confidence 99999999987 47999999876211 112345677888888876654432 379999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHH
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eL 661 (680)
||||++++|++|||||||++||+++.+.+.+.|.++.+. .++|+|+++|++..+. .||+|++|++|+|++.|+.+++
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999988542 3689999999999775 4999999999999999999998
Q ss_pred hhc
Q 005740 662 LHK 664 (680)
Q Consensus 662 l~~ 664 (680)
...
T Consensus 232 ~~~ 234 (265)
T PRK10253 232 VTA 234 (265)
T ss_pred hhH
Confidence 753
No 193
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=379.21 Aligned_cols=224 Identities=30% Similarity=0.477 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~--~~ 506 (680)
-|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC-C-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
..+|+.++|++|++.+|..|++||+.++... . ..++++.++++..++++.+.. .... ..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 5678899999999999999999999875211 1 123345667777776554322 1222 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++++|+||||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS----ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh----cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999874 3589999999999765 599999999999999999
Q ss_pred hHHHhhcC-cHHHHH
Q 005740 658 HAELLHKG-RLYAKL 671 (680)
Q Consensus 658 h~eLl~~~-g~Y~~L 671 (680)
++++.++. ..|.+.
T Consensus 229 ~~~~~~~~~~~~~~~ 243 (250)
T PRK14262 229 TREIVERPKNKLTEE 243 (250)
T ss_pred HHHHHhCCCChHHHH
Confidence 99998653 334443
No 194
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-45 Score=391.06 Aligned_cols=231 Identities=24% Similarity=0.369 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCC-CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC----CCCceEEECCeeCCCCCHHH
Q 005740 434 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~-~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~----p~~G~I~idG~di~~~~~~~ 508 (680)
-|+++||+++|+++.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|++||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 359999999999999999999999999999999999998 48999999999999998877
Q ss_pred hhc----cEEEEccCCc--Cc-cccHHHH----HhcCC--CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCCh
Q 005740 509 LRE----KIGFVGQEPQ--LL-QMDIKSN----IMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 575 (680)
Q Consensus 509 LR~----~I~~V~Qd~~--LF-~gTI~eN----I~~g~--~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSG 575 (680)
+|+ .|+||+|++. |+ .-|+.+| +.... .....++++.++++..++.+.... ++.. -..|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----l~~~--p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR----LDVY--PHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhCC--chhCCH
Confidence 654 6999999995 33 2355554 44321 111123456777777777542211 1111 137999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEE
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 654 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive 654 (680)
|||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.++ .|.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998642 4789999999999985 599999999999999
Q ss_pred ecChHHHhhc-CcHHH-HHH
Q 005740 655 VGNHAELLHK-GRLYA-KLV 672 (680)
Q Consensus 655 ~Gth~eLl~~-~g~Y~-~L~ 672 (680)
.|+.++++++ ...|. .++
T Consensus 235 ~g~~~~~~~~p~hpyt~~ll 254 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQALL 254 (326)
T ss_pred ECCHHHHhhCCCChHHHHHH
Confidence 9999999975 33454 443
No 195
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-45 Score=377.86 Aligned_cols=221 Identities=23% Similarity=0.421 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~ 512 (680)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999998876665 456
Q ss_pred EEEEccCCcCccc-cHHHHHhcCCCC--------C------CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCCh
Q 005740 513 IGFVGQEPQLLQM-DIKSNIMYGCPK--------D------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 575 (680)
Q Consensus 513 I~~V~Qd~~LF~g-TI~eNI~~g~~~--------~------~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSG 575 (680)
++||+|++.+|.+ |++|||.++... + ..+++ .+ ....+.++++.+ |++..... .+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999975 999999986210 0 00000 00 011123334433 34333333 37999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEE
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 654 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive 654 (680)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.++ .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE--HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 9999999999999999999999999999999999999999988542 36899999999999865 99999999999999
Q ss_pred ecChHHHhhc
Q 005740 655 VGNHAELLHK 664 (680)
Q Consensus 655 ~Gth~eLl~~ 664 (680)
.|+.+++...
T Consensus 235 ~~~~~~~~~~ 244 (255)
T PRK11300 235 NGTPEEIRNN 244 (255)
T ss_pred cCCHHHHhhC
Confidence 9999998753
No 196
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=375.19 Aligned_cols=218 Identities=26% Similarity=0.473 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~ 512 (680)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999964 36999999999999999999999999999999999999999999999999998887644 5788
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 587 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAl 587 (680)
|+||+|++.+|. .|++||+.++.. .+.+.++. ...++++++.+ |++..... ..||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999997 599999987621 11222221 12233444444 34433333 47999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+++|++|||||||++||+.+.+.+.+.++++.+ +|+|+|++||++..+ +.||+|++|++|++++.|+++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999988753 378999999999766 45999999999999999999998764
No 197
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-45 Score=377.85 Aligned_cols=219 Identities=30% Similarity=0.498 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCC-CCCHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~-~~~~~ 507 (680)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|++||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999973 4699999999999999999999999999999999999996 5999999999986 45677
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCCC-CCC-----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~s-----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
.+|+.++||+|++.+|..|++||+.++... ... ++++.++++.+++++.+.. .+++.+ ..||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~--~~LS~G~~qrv 154 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLKSHA--FGLSGGQQQRL 154 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---HhhcCc--ccCCHHHHHHH
Confidence 889999999999999999999999986211 111 2344556666666544321 112221 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~e 660 (680)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.++
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK----KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999984 34899999999999876 99999999999999999999
Q ss_pred Hhhc
Q 005740 661 LLHK 664 (680)
Q Consensus 661 Ll~~ 664 (680)
+.++
T Consensus 231 ~~~~ 234 (249)
T PRK14253 231 IFSN 234 (249)
T ss_pred HHcC
Confidence 8754
No 198
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.9e-45 Score=359.42 Aligned_cols=178 Identities=36% Similarity=0.660 Sum_probs=165.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|+++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.++ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 23699999999999999999999999999999999999999999999999998776 677899999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
||+|++.+|+.|++||+ -..||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 2469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEec
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~G 656 (680)
||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999873 368999999999999999999999999999865
No 199
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-45 Score=380.28 Aligned_cols=220 Identities=28% Similarity=0.447 Sum_probs=185.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~ 505 (680)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999964 369999999999999999999999999999999999998 699999999999863 56
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCC-CC---CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~---s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
...+|+.|+||+|++.+|..|++||+.++... .. .++++.++++.+++.+.+.. -.+..+ ..||||||||+
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~~~--~~LS~G~~qrl 163 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD---KLNESG--YSLSGGQQQRL 163 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh---hhCCCc--ccCCHHHHHHH
Confidence 77889999999999999999999999987321 11 13445666666665433221 112211 47999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeC-----------
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD----------- 649 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~----------- 649 (680)
+|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK----KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999884 3589999999998875 5999999996
Q ss_pred CEEEEecChHHHhhc
Q 005740 650 GRIIEVGNHAELLHK 664 (680)
Q Consensus 650 G~Ive~Gth~eLl~~ 664 (680)
|+|+|.|+.+++...
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 779999999999764
No 200
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.8e-45 Score=369.37 Aligned_cols=203 Identities=37% Similarity=0.542 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CCHHHhhcc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--~~~~~LR~~ 512 (680)
|+++||+|+|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999974 369999999999999999999999999999999999999999999999999853 455678899
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
|+||+|++.+|. .|++||+.++.. .+.+. +++.++++..++.+.+.+.| ..||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999999996 699999987621 12222 23444555555544443333 379999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
|++++|++|||||||++||+++.+.+.+.|+++.+ .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 36899999999999965 999999999985
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=379.51 Aligned_cols=219 Identities=30% Similarity=0.455 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCC--CCCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT--DLDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~--~~~~ 506 (680)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|++||.++. +.+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999964 369999999999999999999999999999999999987 48999999999985 3456
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC-C---CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~---~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
..+|++|+||+|++.+|..|++||+.++... . ..++++.++++.+++.+++..+ .+..+ .+||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~~--~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK---LKQSG--LSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH---hcCCc--ccCCHHHHHHHH
Confidence 7789999999999999999999999986311 1 1234566677888876655422 11111 379999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEe---------CCEE
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID---------DGRI 652 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~---------~G~I 652 (680)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|+ +|+|
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK----EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999884 2479999999999875 599999999 8999
Q ss_pred EEecChHHHhhc
Q 005740 653 IEVGNHAELLHK 664 (680)
Q Consensus 653 ve~Gth~eLl~~ 664 (680)
++.|+++|+.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 202
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=376.73 Aligned_cols=219 Identities=31% Similarity=0.507 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~--~~ 506 (680)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|++||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999964 3699999999999999999999999999999999999986 799999999999653 44
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC-CC-C----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.++||+|++.+|..|++||+.++... .. + ++++.++++.+++.+.+..+ .+.. -..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD---LKKS--ALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH---hhCC--cccCCHHHHHH
Confidence 5778999999999999999999999986211 11 1 23456677777764433321 1111 13799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+.+
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999998852 4899999999998765 9999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 99764
No 203
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-45 Score=379.57 Aligned_cols=220 Identities=32% Similarity=0.493 Sum_probs=187.5
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~~ 505 (680)
+.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999963 3699999999999999999999999999999999999986 48999999999864 45
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCC-----CCCC-HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~s-~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
...+|+.|+||+|++.+|..|++||+.++.. ++.+ ++.+.++++.+++.+++..+ +++.+ ..|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~~--~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LNKSA--LGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hcCCc--ccCCHHHHH
Confidence 5678899999999999999999999987521 1111 23456778888876655432 22221 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe-----CCEEE
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRII 653 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~-----~G~Iv 653 (680)
|++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|+ +|+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR----SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 9999999999999999999999999999999999999984 35899999999999865 99999998 59999
Q ss_pred EecChHHHhhc
Q 005740 654 EVGNHAELLHK 664 (680)
Q Consensus 654 e~Gth~eLl~~ 664 (680)
+.|+++++.+.
T Consensus 234 ~~~~~~~~~~~ 244 (259)
T PRK14260 234 EFGVTTQIFSN 244 (259)
T ss_pred EeCCHHHHhcC
Confidence 99999999764
No 204
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-45 Score=376.56 Aligned_cols=225 Identities=28% Similarity=0.424 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~--~~ 506 (680)
-|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999964 3699999999999999999999999999999999999863 489999999999876 45
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC-CC-C----HHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
...|+.|+||+|++.+|..|++||+.++... +. . ++++.++++.+++.+.+. +..+. ..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 6788999999999999999999999987310 11 1 234555666655543332 22333 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~----~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK----KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----hCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999884 3589999999999986 599999999999999999
Q ss_pred hHHHhhcC-cHHHHHH
Q 005740 658 HAELLHKG-RLYAKLV 672 (680)
Q Consensus 658 h~eLl~~~-g~Y~~L~ 672 (680)
.+++.++. ..+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (253)
T PRK14261 232 TTQIFENPHEELTENY 247 (253)
T ss_pred HHHHHhCCCcHHHHHH
Confidence 99997643 2344433
No 205
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.2e-45 Score=366.37 Aligned_cols=205 Identities=32% Similarity=0.516 Sum_probs=180.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++|+. +++|+||++++||.++|+||||||||||+++|+|+++|++|+|++||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999997654 4688899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|. .|++||+.++..+. ..++++.++++..++.+...+.|. .||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------QLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 9999999997 59999998752111 234567888999999888777664 68999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
++|+++||||||++||.++.+.+.+.|+++.++ .++|+|+|||++..+.. ||+|++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999988532 36899999999998764 99999999999999874
No 206
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-45 Score=368.22 Aligned_cols=203 Identities=27% Similarity=0.525 Sum_probs=172.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 369999999999999999999999999999999999999999999999998753 5688999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 9999999997 499999987521 0111 234455555555544433211 379999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
.+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998753 36899999999998865 9999999999999865
No 207
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-45 Score=379.12 Aligned_cols=219 Identities=29% Similarity=0.480 Sum_probs=183.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~~ 506 (680)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999964 469999999999999999999999999999999999875 799999999999965 445
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC--CC----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.|+||+|++.+|.+|++||+.++.. .. ..++.+.++++..++.+.+... .+..+ .+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~--~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR---LHSSA--LSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH---HhcCc--ccCCHHHHHH
Confidence 578899999999999999999999987521 01 1123455566666553222110 11111 4799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK----EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 3589999999999875 59999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++..+
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 99864
No 208
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=379.00 Aligned_cols=219 Identities=30% Similarity=0.475 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~~~ 506 (680)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999985 79999999999853 456
Q ss_pred HHhhccEEEEccCCcCcc-ccHHHHHhcCCC--CC----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
..+|+.|+||+|++.+|. .|++||+.++.. .. ..++++.++++..++.+++.. -++..+ .+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD---RLDKPG--GGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh---HhhCCc--ccCCHHHHH
Confidence 678999999999999997 699999987521 01 112345566666766443321 112211 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEe------CCEE
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID------DGRI 652 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~------~G~I 652 (680)
|++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|+ +|+|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9999999999999999999999999999999999999884 2589999999999975 599999997 8999
Q ss_pred EEecChHHHhhc
Q 005740 653 IEVGNHAELLHK 664 (680)
Q Consensus 653 ve~Gth~eLl~~ 664 (680)
++.|++++++..
T Consensus 232 ~~~~~~~~~~~~ 243 (258)
T PRK14241 232 VEIDDTEKIFSN 243 (258)
T ss_pred EecCCHHHHHhC
Confidence 999999999764
No 209
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=377.73 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~--~~~ 506 (680)
-|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|++||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999875 8999999999975 345
Q ss_pred HHhhccEEEEccCCcCcc-ccHHHHHhcCCC-CCC-CHHHHHHH----HHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEWA----AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~-s~eei~~A----~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
..+|+.|+|++|++.+|. .|+.||+.++.. ... .+++..+. ++..++.+.+ ++.+++.+ .+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA--TGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc--ccCCHHHHH
Confidence 678899999999999997 599999987531 111 23333332 3334433322 23334333 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK----KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 35899999999999885 999999999999999999
Q ss_pred HHHhhc
Q 005740 659 AELLHK 664 (680)
Q Consensus 659 ~eLl~~ 664 (680)
+++++.
T Consensus 232 ~~~~~~ 237 (252)
T PRK14272 232 DQLFTN 237 (252)
T ss_pred HHHHhC
Confidence 999875
No 210
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.9e-45 Score=375.04 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=177.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHh-hc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~L-R~ 511 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+++.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999974 3699999999999999999999999999999999999 58999999999999998887665 45
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCCC--CC------CC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHH
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGCP--KD------VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~------~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr 578 (680)
.++||+|++.+|.+ |++||+.+... .. .+ ++++.++++..++.+.. .+..++ ..||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~-~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN-EGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc-cCcCHHHH
Confidence 59999999999975 89999976411 00 11 12334444444442111 122221 24999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEeCCEEEEec
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~~G~Ive~G 656 (680)
||++||||++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999853 36899999999999986 7999999999999999
Q ss_pred ChHHHh
Q 005740 657 NHAELL 662 (680)
Q Consensus 657 th~eLl 662 (680)
++++..
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 998654
No 211
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-45 Score=380.22 Aligned_cols=217 Identities=30% Similarity=0.477 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~~ 506 (680)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 369999999999999999999999999999999999997 699999999999853 456
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCCCH-----HHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN-----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~s~-----eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
..+|+.|+||+|++.+|..|++||+.++.. .+.++ +.+.++++..++.+.+. ..... ..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHHH
Confidence 678999999999999999999999987621 12222 22344444443322221 12222 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK----KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999884 35899999999999764 99999999999999999
Q ss_pred hHHHhhc
Q 005740 658 HAELLHK 664 (680)
Q Consensus 658 h~eLl~~ 664 (680)
++++.+.
T Consensus 250 ~~~~~~~ 256 (271)
T PRK14238 250 TDKIFSN 256 (271)
T ss_pred HHHHHcC
Confidence 9999864
No 212
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=379.46 Aligned_cols=217 Identities=28% Similarity=0.499 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCC-HH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~~-~~ 507 (680)
.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 4699999999999999999999999999999999999996 7999999999998763 45
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCC--CCCCHHHHHH----HHHHhcHHHHHHcCCCCcccccCC--CCCChHHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIEW----AAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 579 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~s~eei~~----A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQ 579 (680)
.+|++|+||+|++.+|..|++||+.++.. ...++++..+ +++..++.+ .+++.+.. .+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 78899999999999999999999998631 1134444432 333333322 22233333 489999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998842 4799999999998765 999999999999999999
Q ss_pred HHHhhc
Q 005740 659 AELLHK 664 (680)
Q Consensus 659 ~eLl~~ 664 (680)
+++.+.
T Consensus 247 ~~~~~~ 252 (276)
T PRK14271 247 EQLFSS 252 (276)
T ss_pred HHHHhC
Confidence 999875
No 213
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=376.22 Aligned_cols=226 Identities=27% Similarity=0.404 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCC-----C
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 505 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~~-----~ 505 (680)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 46999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHhhccEEEEccCCcCcc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC
Q 005740 506 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 571 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~ 571 (680)
...+|+.++||+|++.+|. .|++||+.++... ...++++.++++..++.+++.+.| .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 4567889999999999887 5999999986310 011335666777777766554322 3
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCC
Q 005740 572 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDG 650 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G 650 (680)
.||||||||++||||++.+|++|||||||++||.++.+.+.+.|+++.++ .|+|+|+|||+++.+ +.||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998542 368999999999975 569999999999
Q ss_pred EEEEecChHHHhhcCcHHHHHHHHh
Q 005740 651 RIIEVGNHAELLHKGRLYAKLVKRQ 675 (680)
Q Consensus 651 ~Ive~Gth~eLl~~~g~Y~~L~~~q 675 (680)
+|++.|+++++ ......++|...
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhh
Confidence 99999999997 334556665543
No 214
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.5e-45 Score=355.34 Aligned_cols=173 Identities=43% Similarity=0.731 Sum_probs=163.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++++|++. +.++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5799999999752 246999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
||+|++.+|.+|++||+ ||||||||++||||++++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
||||||++||+.+.+.+.+.|+++.+ +++|+|++||+++.+..||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998853 37899999999999999999999999975
No 215
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-45 Score=382.66 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=184.1
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCCC--C
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~~--~ 505 (680)
..|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999964 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCC-CCCC-----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~s-----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
...+|+.|+||+|++.+|..|++|||.++.. .... ++++.++++..++.+.+. +.++..+ ..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~~~--~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDKNA--LGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhCCh--hhCCHHHHH
Confidence 3467899999999999999999999998621 0111 234555666666543322 1222222 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999874 35899999999999865 999999999999999999
Q ss_pred HHHhhc
Q 005740 659 AELLHK 664 (680)
Q Consensus 659 ~eLl~~ 664 (680)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 999875
No 216
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-44 Score=387.24 Aligned_cols=229 Identities=26% Similarity=0.434 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCCCHHHh
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~~~~~~L 509 (680)
-++++||+++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|++||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996421 246999999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----ccEEEEccCC--cCc-cccHHHHHhcCC--CCCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCC--CCCC
Q 005740 510 R----EKIGFVGQEP--QLL-QMDIKSNIMYGC--PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 574 (680)
Q Consensus 510 R----~~I~~V~Qd~--~LF-~gTI~eNI~~g~--~~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge--~~LS 574 (680)
| +.|+||+||+ .|+ ..|+.+|+.... ..+.+.++ +.++++.+ .||++++. ++. ..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~~-~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARKR-MKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHHH-hcCCcccCC
Confidence 4 4899999998 355 357888775321 01233333 33333333 34544332 333 4899
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Iv 653 (680)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.++ .+.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998653 3789999999999987 59999999999999
Q ss_pred EecChHHHhhc-CcHHHH-HH
Q 005740 654 EVGNHAELLHK-GRLYAK-LV 672 (680)
Q Consensus 654 e~Gth~eLl~~-~g~Y~~-L~ 672 (680)
|.|+.+++.+. ...|.+ |+
T Consensus 242 e~g~~~~i~~~p~~pyt~~l~ 262 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSIGLL 262 (330)
T ss_pred EECCHHHHHhCCCCHHHHHHH
Confidence 99999999875 334544 44
No 217
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=369.97 Aligned_cols=213 Identities=31% Similarity=0.526 Sum_probs=186.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 38999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|. .|++||+.++... .. .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 9999999994 7999999876311 11 2345677788888877766554 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
++|++|+|||||++||+.+.+.+.+.|+++.++ .++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~--~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKE--FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999987532 37899999999999875 999999999999999999999875
No 218
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=374.57 Aligned_cols=219 Identities=32% Similarity=0.518 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~~ 506 (680)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+.+ |++|+|++||.++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4889999999963 369999999999999999999999999999999999975 489999999999876 346
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.++||+|++.+|.+|++||+.++.. .+. + ++++.++++.+++.+++..+ +++.+ ..||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~~--~~LS~Gq~qr 154 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDKSA--LGLSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhCCc--ccCCHHHHHH
Confidence 678999999999999999999999987621 111 1 23466678888887665432 22222 3799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK----EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999884 36899999999998766 8999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++...
T Consensus 231 ~~~~~ 235 (250)
T PRK14266 231 QIFIN 235 (250)
T ss_pred HHHhC
Confidence 99754
No 219
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.6e-45 Score=394.16 Aligned_cols=218 Identities=28% Similarity=0.426 Sum_probs=183.7
Q ss_pred EEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe----eCCCCCHHHhh----
Q 005740 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRWLR---- 510 (680)
Q Consensus 439 nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~----di~~~~~~~LR---- 510 (680)
++..+|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+.+.+|
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 34455642 46899999999999999999999999999999999999999999999996 67777766553
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
++|+||+|++.+|. .|++||+.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA 176 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 58999999999996 799999998731 0122 245667788887766654444 26999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+.+|+|||||||||+||+.+.+.+++.|.++.++ .++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998642 378999999999986 5699999999999999999999986
Q ss_pred c-CcHHHH
Q 005740 664 K-GRLYAK 670 (680)
Q Consensus 664 ~-~g~Y~~ 670 (680)
+ .+.|.+
T Consensus 255 ~p~~~~~~ 262 (382)
T TIGR03415 255 NPANDYVA 262 (382)
T ss_pred CcchHHHH
Confidence 5 344443
No 220
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=379.85 Aligned_cols=220 Identities=28% Similarity=0.482 Sum_probs=186.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~ 505 (680)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|++||.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999964 369999999999999999999999999999999999997 689999999999865 35
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCC----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
...+|+.++||+|++.+|..|++||+.++.. +...++++.++++..++.+.+... ++..+ ..||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~~--~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDSSG--LDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhCCc--ccCCHHHHHHH
Confidence 5678999999999999999999999987521 111245677777777764433211 11111 37999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEE-EEeCCEEEEecChH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHA 659 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~-vl~~G~Ive~Gth~ 659 (680)
+|||||+++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||++..+.. |||++ +|++|+|++.|+++
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999853 4799999999999875 99975 57999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
++.++
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 99764
No 221
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=376.45 Aligned_cols=222 Identities=29% Similarity=0.484 Sum_probs=188.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-----CceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-----~G~I~idG~di~~--~~ 505 (680)
+.|+++||+|+|++ ..+|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999964 35999999999999999999999999999999999999986 8999999999853 45
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCC-----CCCC-HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~s-~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
...+|+.++|++|++.+|..|++||+.++.. ++.+ ++++.++++..++.+++..+ .+..+ ..|||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~--~~LSgGq~q 157 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK---IHKSA--LDLSGGQQQ 157 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH---hcCCc--ccCCHHHHH
Confidence 5678999999999999999999999987521 1111 23466677777776655432 11111 479999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeC-----CEEE
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD-----GRII 653 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~-----G~Iv 653 (680)
|++||||++++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||++..+. .||+|++|++ |+|+
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR--SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999987531 3789999999999986 4999999999 9999
Q ss_pred EecChHHHhhc
Q 005740 654 EVGNHAELLHK 664 (680)
Q Consensus 654 e~Gth~eLl~~ 664 (680)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999764
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=391.08 Aligned_cols=213 Identities=29% Similarity=0.486 Sum_probs=187.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----CHHHhh
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~----~~~~LR 510 (680)
|++ ||+++|++ . .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+. +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 2 23 99999999999999999999999999999999999999999999998753 245678
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
++|+||+|++.+|. .|++|||.++. ....++++.++++..++.++..+.| .+||||||||++|||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhh-hhhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999995 69999999984 3455677888888888877766655 3699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcC
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+|++||||||||+||+.+.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988642 36899999999998755 9999999999999999999998753
No 223
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=376.57 Aligned_cols=214 Identities=28% Similarity=0.384 Sum_probs=184.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC--------CceEEECCeeCCCCCH
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 506 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~--------~G~I~idG~di~~~~~ 506 (680)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+.+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHhhccEEEEccCCc-CccccHHHHHhcCCCCC------C---CHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCC
Q 005740 507 RWLREKIGFVGQEPQ-LLQMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 574 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~-LF~gTI~eNI~~g~~~~------~---s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LS 574 (680)
..+|+.++||+|++. +|..|++||+.++..+. . .++.+.++++..++.++ .+. ..||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 889999999999986 67899999998863111 1 12234555555555433 332 4799
Q ss_pred hHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEE
Q 005740 575 GGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRI 644 (680)
Q Consensus 575 GGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I 644 (680)
||||||++||||++ .+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|+|+++.+. .||+|
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEE
Confidence 99999999999999 599999999999999999999999999987532 2689999999999986 59999
Q ss_pred EEEeCCEEEEecChHHHhhc
Q 005740 645 VVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 645 ~vl~~G~Ive~Gth~eLl~~ 664 (680)
++|++|+|++.|+++++++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 226 AMLADGAIVAHGAPADVLTP 245 (272)
T ss_pred EEEECCeEEEecCHHHHcCH
Confidence 99999999999999998763
No 224
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=375.96 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=187.5
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCC----
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT---- 502 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~---- 502 (680)
.+.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|++||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999974 3699999999999999999999999999999999999985 7999999998874
Q ss_pred CCCHHHhhccEEEEccCCcCccccHHHHHhcCCC-CC-----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCC
Q 005740 503 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 574 (680)
Q Consensus 503 ~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LS 574 (680)
+.+...+|+.|+|++|++.+|.+|++|||.++.. .. ..++++.++++.+++.+.+. +..+. ..||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3445678999999999999999999999987621 01 12456677777776654332 22222 3799
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Iv 653 (680)
||||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999884 3589999999999986 59999999999999
Q ss_pred EecChHHHhhc
Q 005740 654 EVGNHAELLHK 664 (680)
Q Consensus 654 e~Gth~eLl~~ 664 (680)
+.|+++++...
T Consensus 240 ~~g~~~~~~~~ 250 (265)
T PRK14252 240 EFGATDTIFIK 250 (265)
T ss_pred EeCCHHHHHhC
Confidence 99999999753
No 225
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-44 Score=386.79 Aligned_cols=219 Identities=28% Similarity=0.499 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999998654 5788999
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
|||||++.+| ..|++||+.+... ...+.++..+.++. +.++ ..|++..++.++ +||||||||++|||||+.+|
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~~--~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARVS--DLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCChh--hCCHHHHHHHHHHHHHhcCC
Confidence 9999999987 6799999986311 12233333222211 1121 245555666654 69999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
++|||||||++||+.+.+.+.+.|+++.+ +|+|+|++||+++.+.. ||+|++|++|+|++.|+.+++.++
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999853 47999999999999865 999999999999999999999764
No 226
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=386.32 Aligned_cols=226 Identities=23% Similarity=0.352 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC----CCCceEEECCeeCCCCCHHH
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~----p~~G~I~idG~di~~~~~~~ 508 (680)
-|+++||+++|+.+. +..+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|++||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2469999999999999999999999999999999999986 68999999999999888776
Q ss_pred hh----ccEEEEccCCcC--c-cccHHHHHhcCC--C---C----C--CCHHHHHHHHHHhcHHH---HHHcCCCCcccc
Q 005740 509 LR----EKIGFVGQEPQL--L-QMDIKSNIMYGC--P---K----D--VKNEDIEWAAKQAYVHE---FILSLPCGYETL 567 (680)
Q Consensus 509 LR----~~I~~V~Qd~~L--F-~gTI~eNI~~g~--~---~----~--~s~eei~~A~~~a~l~d---fI~~LP~G~dT~ 567 (680)
++ +.|+||+|++.. + ..||.+|+.... . . + ..++++.++++..++++ ...+.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 53 479999999973 3 468999996420 0 0 0 01345677777777753 223333
Q ss_pred cCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEE
Q 005740 568 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 646 (680)
Q Consensus 568 vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~v 646 (680)
..||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|+++.++ .|.|+|+|||+++.+.. ||+|+|
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 369999999999999999999999999999999999999999999998642 37899999999999965 999999
Q ss_pred EeCCEEEEecChHHHhhc-CcHHHH
Q 005740 647 IDDGRIIEVGNHAELLHK-GRLYAK 670 (680)
Q Consensus 647 l~~G~Ive~Gth~eLl~~-~g~Y~~ 670 (680)
|++|+|+|.|+.+++.+. ...|.+
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999875 345654
No 227
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.7e-44 Score=382.76 Aligned_cols=213 Identities=22% Similarity=0.411 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++|++ ..+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+ +...+|+++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 4567889999
Q ss_pred EEccCCcCccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
|+||++.+|.+ |++||+.+... ...+ ++++.++++..++.++..+ .+ +.||||||||++||||++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-------KI--GQLSKGYRQRVGLAQALI 149 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-------ch--hhCCHHHHHHHHHHHHHh
Confidence 99999999965 99999986421 1122 2344555555555443322 11 379999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.++
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999884 36899999999998876 999999999999999999999764
No 228
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=373.46 Aligned_cols=219 Identities=30% Similarity=0.499 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC--C---CCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p---~~G~I~idG~di~~--~~~ 506 (680)
-|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|++||.++.+ .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCC-CCC-----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
..+|+.++||+|++.+|..|++||+.++.. ... .++++.++++.+++.+.+.. -++..+ ..||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~---~~~~~~--~~LS~Gq~qr 156 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD---HLHESA--LSLSGGQQQR 156 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh---HHhcCc--ccCCHHHHHH
Confidence 677889999999999999999999987521 111 12344555666655433321 111111 4799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~ 659 (680)
++||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998842 479999999999986 49999999999999999999
Q ss_pred HHhhc
Q 005740 660 ELLHK 664 (680)
Q Consensus 660 eLl~~ 664 (680)
+....
T Consensus 233 ~~~~~ 237 (252)
T PRK14255 233 QMFLN 237 (252)
T ss_pred HHhcC
Confidence 98765
No 229
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=373.41 Aligned_cols=219 Identities=27% Similarity=0.399 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCC--CH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~--~~ 506 (680)
-+.+++++++|.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|++||.++.+. +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4789999999963 4699999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC----CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~----~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
..+|+.|+||+|++.+|..|++|||.++... ...++++.++++.+++.+.+.... +. .-.+||||||||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~---~~--~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL---KV--SGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh---hC--CcccCCHHHHHHHH
Confidence 5778899999999999999999999987310 112356788888888766554321 11 11479999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEe--------CCEEE
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--------DGRII 653 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~--------~G~Iv 653 (680)
||||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|+ +|+|+
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999884 3589999999999875 499999996 89999
Q ss_pred EecChHHHhhc
Q 005740 654 EVGNHAELLHK 664 (680)
Q Consensus 654 e~Gth~eLl~~ 664 (680)
+.|+++++++.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
No 230
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.2e-44 Score=364.99 Aligned_cols=207 Identities=30% Similarity=0.472 Sum_probs=179.0
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH---Hhh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~---~LR 510 (680)
|+++||+++|++.. ++.+|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|++||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999999877643 468
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
+.|+|++|++.+|. .|+.||+.++.. +..+. +++.++++..++.+++.+.| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 89999999999997 799999987631 12232 34566667777766666555 3699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
|||++++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|+|+++....||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999988642 37999999999998888999999999986
No 231
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.6e-44 Score=375.21 Aligned_cols=230 Identities=30% Similarity=0.459 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCC------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-
Q 005740 434 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI- 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~- 506 (680)
-|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999731 02579999999999999999999999999999999999999999999999999988765
Q ss_pred --HHhhccEEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCccccc-CC--CCCChH
Q 005740 507 --RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD--DLLSGG 576 (680)
Q Consensus 507 --~~LR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v-ge--~~LSGG 576 (680)
..+|+.++||+|++. ++ ..|++||+.+... .+.+. +.....+++.+..+ |+++.+ .. ..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 357889999999983 43 5799999975311 01111 12222344555544 565432 22 489999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~ 655 (680)
||||++||||++.+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||++..+.. ||+|++|++|++++.
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999999999999999999988542 36899999999999975 999999999999999
Q ss_pred cChHHHhhcCcHHHHHH
Q 005740 656 GNHAELLHKGRLYAKLV 672 (680)
Q Consensus 656 Gth~eLl~~~g~Y~~L~ 672 (680)
|+++|+...++.|..-+
T Consensus 234 g~~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 234 QPVGDKLTFSSPAGRVL 250 (268)
T ss_pred CChhhccCCCCHHHHHH
Confidence 99999987766554433
No 232
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.7e-44 Score=382.88 Aligned_cols=202 Identities=27% Similarity=0.427 Sum_probs=173.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc-cHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI~ 528 (680)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++||||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999976 446778999999999999975 999
Q ss_pred HHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 005740 529 SNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 603 (680)
Q Consensus 529 eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 603 (680)
||+.+... ...+ ++++.++++..++.+... +.+ ..||||||||++|||||+.+|++|||||||++|
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~--~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-------RPV--GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-------Cch--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99987421 1122 234555666666544332 222 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+++.+.+.+.|+++.+ +|+|+|++||+++.+.. ||+|++|++|+|++.|+++++.++
T Consensus 156 D~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999853 37899999999999865 999999999999999999999765
No 233
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.5e-44 Score=370.86 Aligned_cols=227 Identities=27% Similarity=0.415 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee-----CCCCCHHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d-----i~~~~~~~ 508 (680)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999999 87776655
Q ss_pred ----hhccEEEEccCCc--Cc-cccHHHHHhcCC--CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHH
Q 005740 509 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 577 (680)
Q Consensus 509 ----LR~~I~~V~Qd~~--LF-~gTI~eNI~~g~--~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQ 577 (680)
+|+.++||+|++. ++ ..|+.|||.+.. ....+.+++.+ .++++++.++-+ ++..+. ..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3667999999984 33 458899986531 00111222211 234556655332 123333 4799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
|||++||||++++|++|||||||++||+++++.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999987542 3689999999999997 59999999999999999
Q ss_pred ChHHHhhcC-cHHHHH
Q 005740 657 NHAELLHKG-RLYAKL 671 (680)
Q Consensus 657 th~eLl~~~-g~Y~~L 671 (680)
+++++..+. ..|.+.
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 235 LTDQVLDDPQHPYTQL 250 (258)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 999998653 345443
No 234
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.5e-44 Score=367.80 Aligned_cols=212 Identities=28% Similarity=0.431 Sum_probs=170.0
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCCHHHhh
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~~~~~~LR 510 (680)
++|+||+|+|++.+ .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 2579999999999999999999999999999999999999 99999999999875 35788
Q ss_pred ccEEEEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHH-HHHcCCCCcccccCC---CCCChHHHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDD---DLLSGGQKQRIAIAR 585 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~d-fI~~LP~G~dT~vge---~~LSGGQrQRIaIAR 585 (680)
+.|+||+|++.+|.+ |++||+.++.. ....+...++.+...+++ .+. ....+.+.+ ..||||||||++|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAI-LRLPRKSSDAIRKKRVEDVLLR---DLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHH-hhcccccchHHHHHHHHHHHHH---hhcchhhhcccccCcCHHHHHHHHHHH
Confidence 999999999999987 99999997521 110000001111111111 122 111222222 479999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc--chHhhcCEEEEEeCCEEEEec
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--STIKAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl--sti~~aD~I~vl~~G~Ive~G 656 (680)
|++++|++|||||||++||+.+.+.+.+.++++.+ +++|+|++||++ ...+.||+|++|++|+|++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998753 368999999998 345679999999999999876
No 235
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=373.52 Aligned_cols=219 Identities=27% Similarity=0.416 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCC--CCH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 506 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~--~~~ 506 (680)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999974 3699999999999999999999999999999999999874 69999999999864 345
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCCCC-C---CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~---~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
..+|+.|+||+|++.+|..|+.|||.++... . ..++++.++++.+++.+++... .+..+ ..||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~~--~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKEKG--TALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcCCc--ccCCHHHHHHHH
Confidence 5788999999999999999999999986311 0 1234566777888776555321 12111 379999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEe---------CCEE
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID---------DGRI 652 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~---------~G~I 652 (680)
|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|+|+++.+. .||+|++|+ +|++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK----EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999884 3589999999999885 599999998 8999
Q ss_pred EEecChHHHhhc
Q 005740 653 IEVGNHAELLHK 664 (680)
Q Consensus 653 ve~Gth~eLl~~ 664 (680)
++.|+.+|+.+.
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 236
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=371.61 Aligned_cols=228 Identities=26% Similarity=0.439 Sum_probs=187.8
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC------eeCCCCCH
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDI 506 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG------~di~~~~~ 506 (680)
.-|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .++.+++.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999974 4699999999999999999999999999999999999999996666554 67777788
Q ss_pred HHhhccEEEEccCCcCccc-cHHHHHhcCCCC-CC-CHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 507 RWLREKIGFVGQEPQLLQM-DIKSNIMYGCPK-DV-KNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~-s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
..+|+.++|++|++.+|.+ |++||+.++... .. +++ ++.++++..++++++.. -.+... ..|||||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~--~~LS~G~~q 160 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD---RLNSPA--SQLSGGQQQ 160 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh---hhcCCc--ccCCHHHHH
Confidence 8899999999999999975 999999976311 11 222 34556666666443311 111111 479999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth 658 (680)
|++||||++++|++|||||||++||..+++.+.+.|.++. +++|+|++||+++.+ +.||++++|++|++++.|++
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK----NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999884 358999999999998 56999999999999999999
Q ss_pred HHHhhc-CcHHHHHH
Q 005740 659 AELLHK-GRLYAKLV 672 (680)
Q Consensus 659 ~eLl~~-~g~Y~~L~ 672 (680)
+|+.+. ...|.+.+
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 237 NEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHhCCCcHHHHHH
Confidence 999875 33465543
No 237
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-44 Score=379.14 Aligned_cols=218 Identities=31% Similarity=0.519 Sum_probs=184.9
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----CCCceEEECCeeCCC--CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----p~~G~I~idG~di~~--~~ 505 (680)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|++||.++.+ .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 369999999999999999999999999999999999996 689999999999865 34
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCC------------------CCCHHHHHHHHHHhcHHHHHHcCCCCcccc
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------------------DVKNEDIEWAAKQAYVHEFILSLPCGYETL 567 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~------------------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~ 567 (680)
...+|+.|+||+|++.+|.+|++||+.++... +..++++.++++.+++.+. +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 66788999999999999999999999986211 0113345556666655333 3333
Q ss_pred cCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEE
Q 005740 568 VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI 644 (680)
Q Consensus 568 vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I 644 (680)
... .+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEE
Confidence 333 48999999999999999999999999999999999999999999998853 4799999999999765 9997
Q ss_pred -EEEeCCEEEEecChHHHhhc
Q 005740 645 -VVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 645 -~vl~~G~Ive~Gth~eLl~~ 664 (680)
++|++|+|++.|+++++.+.
T Consensus 270 ~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEEecCCEEEEeCCHHHHHhC
Confidence 57899999999999999764
No 238
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6.8e-44 Score=385.94 Aligned_cols=210 Identities=32% Similarity=0.517 Sum_probs=180.0
Q ss_pred EEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----HHHhhccEE
Q 005740 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 514 (680)
Q Consensus 439 nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~----~~~LR~~I~ 514 (680)
||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+ ...+|+.|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999987543 346788999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
||+|++.+|. .|++||+.++.. ... ++++.++++..++.++..+.| ..||||||||++|||||+.
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 9999999996 599999998732 222 223566666666655554443 3699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcC
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+|++||||||||+||+.+.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999999998642 37899999999999865 9999999999999999999998653
No 239
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.4e-43 Score=366.90 Aligned_cols=227 Identities=24% Similarity=0.402 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC----CCceEEECCeeCCCCCHHHh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p----~~G~I~idG~di~~~~~~~L 509 (680)
.|+++||+|+| + +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hccEEEEccCCc-Ccc--ccHHHHHhcCC---CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005740 510 REKIGFVGQEPQ-LLQ--MDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 581 (680)
Q Consensus 510 R~~I~~V~Qd~~-LF~--gTI~eNI~~g~---~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRI 581 (680)
++.|+||+|++. .|. .|+.+|+.+.. .....++++.++++..++.++ ++.++. ..||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 567999999985 453 58888875420 112345667778887776542 112222 47999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+|||||+++|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999987542 3689999999999986 599999999999999999999
Q ss_pred HhhcC--cHHHHHHHHhh
Q 005740 661 LLHKG--RLYAKLVKRQT 676 (680)
Q Consensus 661 Ll~~~--g~Y~~L~~~q~ 676 (680)
+.+.. ...+.++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 228 LFNAPKHAVTRSLVSAHL 245 (254)
T ss_pred HhhCCCCHHHHHHHHhhh
Confidence 98753 34555666554
No 240
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-44 Score=368.56 Aligned_cols=205 Identities=30% Similarity=0.448 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998653 34699
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999986 699999987521 1122 234566666666655443322 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe--CCEEEEecCh
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 658 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~--~G~Ive~Gth 658 (680)
++|++|||||||++||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE--TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999987431 37899999999998855 99999999 5999998764
No 241
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=364.48 Aligned_cols=215 Identities=31% Similarity=0.520 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe---eCCCCCHHHhh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~---di~~~~~~~LR 510 (680)
.|+.+|++..|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4788999999974 46999999999999999999999999999999999999999999999999 66663 3444
Q ss_pred ccEEEEccCCcCc-cccHHHHHhcCCC-----C-C-CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 511 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----K-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 511 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~-----~-~-~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
++||+|+||.-|| +.||+|||+||.+ + . ..+.++.+-++.+++..+-++-|. +||||||||+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---------QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---------QLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch---------hcChHHHHHHH
Confidence 7899999999999 8999999999951 1 1 234456667777877766655554 68999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEecChHHH
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
+||||...|++|+||||.+|||+.-.+.+.+-|+++.+. -|.|++.|||.... .+.||||+||++|+|.+.|+++|.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999988754 37899999999866 466999999999999999999999
Q ss_pred hhc
Q 005740 662 LHK 664 (680)
Q Consensus 662 l~~ 664 (680)
...
T Consensus 226 ~~~ 228 (345)
T COG1118 226 YDH 228 (345)
T ss_pred hcC
Confidence 865
No 242
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.2e-43 Score=365.80 Aligned_cols=217 Identities=26% Similarity=0.328 Sum_probs=175.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHhh-c
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLR-E 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~LR-~ 511 (680)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|++||.++.+++....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 3699999999999999999999999999999999999 579999999999999888877665 5
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCC-------CCC-CCHHHHHHHHHHhcHHHHHH--cCCCCcccccCCCCCChHHHHH
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGC-------PKD-VKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~-------~~~-~s~eei~~A~~~a~l~dfI~--~LP~G~dT~vge~~LSGGQrQR 580 (680)
.++||+|++.++.. |..+|+.+.. ..+ ....++.+ .+.+.++ .+|+++.+......||||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD-----LMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH-----HHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 79999999987754 5445443210 000 01111111 1112222 4565655544434799999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEeCCEEEEecCh
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~~G~Ive~Gth 658 (680)
++||||++++|+||||||||++||+++.+.+.+.|+++.+ .++|+|+|||+++.+.. ||+|++|++|+|++.|++
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999988753 36899999999999987 899999999999999999
Q ss_pred HHHh
Q 005740 659 AELL 662 (680)
Q Consensus 659 ~eLl 662 (680)
++..
T Consensus 231 ~~~~ 234 (248)
T PRK09580 231 TLVK 234 (248)
T ss_pred HHHH
Confidence 8653
No 243
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=354.59 Aligned_cols=193 Identities=25% Similarity=0.426 Sum_probs=164.3
Q ss_pred cEEEEEEEEEcCCC-CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCCHHHh
Q 005740 434 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~-~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~~~~~~L 509 (680)
.+.++||+|.|+.+ .++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+.+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999853 34579999999999999999999999999999999999999 89999999999998775 467
Q ss_pred hccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 510 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
|+.++||+|++.+|. .|++|||.++. ... .+..+ ..||||||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~--~~~-----------------------~~~~~--~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFAL--RCK-----------------------GNEFV--RGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhh--hhc-----------------------cccch--hhCCHHHHHHHHHHHHHh
Confidence 889999999998886 59999998762 110 11111 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEec-CcchH-hhcCEEEEEeCCEEEEec
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLSTI-KAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH-Rlsti-~~aD~I~vl~~G~Ive~G 656 (680)
++|++|||||||++||+++++.+.+.|+++.++ .++|+|+++| ++..+ +.||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998542 2467666655 45555 569999999999999865
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=346.30 Aligned_cols=171 Identities=34% Similarity=0.644 Sum_probs=159.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++|++ .++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998766 67889999
Q ss_pred EEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCe
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~I 593 (680)
||+|++.+|.+ |++||+. ||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999999976 9999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEE
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 652 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~I 652 (680)
|||||||++||+.+.+.+.+.|+++.+ +|+|+|++||+.+.+. .||+|++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999864 3689999999999887 5999999999974
No 245
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.6e-43 Score=359.48 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
|++|++.+|. .|++||+.++.. ...+++++.++++..++.+...+-| ..||||||||++||||++++|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 699999986421 1234667788888888776544322 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+|||||||++||+++.+.+.+.|+++.+ +++|+|++||++..+. .||+|++|++|+|++.|+.++
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998853 3689999999999985 599999999999999999765
No 246
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-43 Score=346.40 Aligned_cols=174 Identities=45% Similarity=0.695 Sum_probs=160.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--HHHhhcc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~--~~~LR~~ 512 (680)
|+++|++|+|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|++||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 36999999999999999999999999999999999999999999999999998876 6778899
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
++|++|++.+|. .|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999885 5999998653 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCE
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 651 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~ 651 (680)
+++||||||++||+.+...+.+.|+++.++ .++|+|++||++..+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988642 2689999999999998 599999999985
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.5e-43 Score=362.61 Aligned_cols=214 Identities=25% Similarity=0.334 Sum_probs=178.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|++||.++.+++.+..++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3699999999999999999999999999999999998 7899999999999999988776665
Q ss_pred -cEEEEccCCcCccc-cHHHHHhcCCCC--------CCC----HHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChH
Q 005740 512 -KIGFVGQEPQLLQM-DIKSNIMYGCPK--------DVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGG 576 (680)
Q Consensus 512 -~I~~V~Qd~~LF~g-TI~eNI~~g~~~--------~~s----~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGG 576 (680)
.+++++|++.+|.+ |+.+|+.++... +.+ .+++.++++..++. ++. +..+++ .||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~-~LSgG 155 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-------SRNVNE-GFSGG 155 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-------cccccc-CCCHH
Confidence 48999999999975 799998765211 111 12334455555443 122 222211 49999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEeCCEEEE
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIE 654 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~~G~Ive 654 (680)
||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999998753 37899999999999875 89999999999999
Q ss_pred ecChHHH
Q 005740 655 VGNHAEL 661 (680)
Q Consensus 655 ~Gth~eL 661 (680)
.|+++++
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999844
No 248
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-43 Score=350.41 Aligned_cols=183 Identities=25% Similarity=0.467 Sum_probs=163.2
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC--CCCCceEEECCeeCCCCCHHHhh
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~G~I~idG~di~~~~~~~LR 510 (680)
.|+++||+|+|+++. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 589999999997421 246999999999999999999999999999999999987 489999999999886 5778
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
++++|++|++.+|. .|++||+.++. . ++ .||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~--~---------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA--L---------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH--H---------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 89999999998887 49999998761 0 00 799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch--HhhcCEEEEEeC-CEEEEec
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD-GRIIEVG 656 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst--i~~aD~I~vl~~-G~Ive~G 656 (680)
+|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++. .+.||+|++|++ |+|++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998753 37899999999983 567999999999 9999876
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-43 Score=366.87 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=177.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2469999999999999999999999999999999999999999999999998752 2223469
Q ss_pred EEEccCCcC---ccccHHHHHhcCCCC---------CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 514 GFVGQEPQL---LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 514 ~~V~Qd~~L---F~gTI~eNI~~g~~~---------~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
+||+|++.+ +..+++||+.++... ...++++.++++..++.++..+ .+ ..||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------QI--GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------Cc--ccCCHHHHHHH
Confidence 999999875 466899999764210 1123446667777777665432 33 25999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
+||||++++|++|||||||++||+++.+.+.+.|+++.+ +|+|+|+|||+++.+. .||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999998853 3789999999998874 59999777 899999999999
Q ss_pred Hhh
Q 005740 661 LLH 663 (680)
Q Consensus 661 Ll~ 663 (680)
+.+
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 250
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.1e-43 Score=369.63 Aligned_cols=217 Identities=31% Similarity=0.536 Sum_probs=189.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+.+|+. ++.+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ....|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 24799999999999999999999999999999999999999999999999998765 78899999
Q ss_pred EEEccCCcCc-cccHHHHHhcCC----CC-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGC----PK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~----~~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||||++.++ .-|++||+.|.. .+ +..++++.+.++..++.+.- +..+ +.||+|||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~--~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV--RTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch--hhcCHHHHHHHHHHHHH
Confidence 9999999988 569999998742 11 12356788888888876521 1122 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+.+|++||||||||+||+.+.+.+.+.|+++.++ .++|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999753 23899999999999988 999999999999999999998754
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=7.2e-43 Score=361.34 Aligned_cols=225 Identities=28% Similarity=0.429 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee-----CCCCCHHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d-----i~~~~~~~ 508 (680)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 359999999999999999999999999999999999999999999999988 77776554
Q ss_pred ----hhccEEEEccCCcC---ccccHHHHHhcCC--CCCCCHHHHHHHHHHhcHHHHHHcCCCCcc-cccCC--CCCChH
Q 005740 509 ----LREKIGFVGQEPQL---LQMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGG 576 (680)
Q Consensus 509 ----LR~~I~~V~Qd~~L---F~gTI~eNI~~g~--~~~~s~eei~~A~~~a~l~dfI~~LP~G~d-T~vge--~~LSGG 576 (680)
+++.|+|++|++.+ +..|+.||+.+.. .......+. ...++++++.+. ++ +.... ..||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 34679999999852 3568899986421 000011111 123445566553 32 23333 379999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~ 655 (680)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.++ .+.|+|+|+|++..+.. ||++++|++|++++.
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999887532 36899999999999985 999999999999999
Q ss_pred cChHHHhhc-CcHHHH
Q 005740 656 GNHAELLHK-GRLYAK 670 (680)
Q Consensus 656 Gth~eLl~~-~g~Y~~ 670 (680)
|+++++..+ ...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 999999864 334543
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.7e-43 Score=360.16 Aligned_cols=210 Identities=27% Similarity=0.462 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..|
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEccCCcCcc---ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 514 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~~V~Qd~~LF~---gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
+|++|++.++. .|+++|+.+. + ..+++++.++++..++.+++.+.+ ..||||||||++||||++++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 4899998775 2 456788999999999988765433 36999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhcCcHHH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 669 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~ 669 (680)
|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+. .||+|++|++ +|++.|+++++.+ ++.|.
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 9999999999999999999999999987532 2689999999999985 5999999965 7999999999864 55666
Q ss_pred HHH
Q 005740 670 KLV 672 (680)
Q Consensus 670 ~L~ 672 (680)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 665
No 253
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-43 Score=354.44 Aligned_cols=202 Identities=32% Similarity=0.512 Sum_probs=168.5
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC----CHHHhhc
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLRE 511 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~----~~~~LR~ 511 (680)
.+ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999974 235 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
.++||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+.....| ..||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~a 145 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLK-RKRNREDRISVDELLDLLGLDHLLNRYP---------AQLSGGEKQRVALARA 145 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHcCCHhHhhcCc---------ccCCHHHHHHHHHHHH
Confidence 9999999999995 699999998632 212 233444555554443332211 3799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
++++|++|||||||++||+++.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988542 3689999999999985 59999999999999876
No 254
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.2e-43 Score=348.89 Aligned_cols=184 Identities=34% Similarity=0.575 Sum_probs=164.0
Q ss_pred cEEEEEEEEEcCCC---CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC--CCCCceEEECCeeCCCCCHHH
Q 005740 434 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~---~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~G~I~idG~di~~~~~~~ 508 (680)
.|+++||+|+|++. .++++|+|+||+|++||.++|+||||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999742 0247999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 509 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
+|+.++|++|++.+|. .|++||+.++. ... .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~--~~~-------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA--KLR-------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH--Hhc-------------------------------cCCHHHHHHHHHHHHH
Confidence 7889999999999986 59999998652 100 6999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc-hH-hhcCEEEEEeCCEEEEec
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls-ti-~~aD~I~vl~~G~Ive~G 656 (680)
+++|++|||||||++||..+.+.+.+.|+++.+ +++|+|+|||+++ .+ +.||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998853 3789999999997 44 459999999999998765
No 255
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.9e-43 Score=352.85 Aligned_cols=196 Identities=34% Similarity=0.511 Sum_probs=167.3
Q ss_pred EEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH----HHhhcc
Q 005740 437 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 512 (680)
Q Consensus 437 f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~----~~LR~~ 512 (680)
++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 369999999999999999999999999999999999999999999999999765542 346789
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CC----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
++||+|++.+|. .|++||+.++.. .. ..++++.++++..++.++..+.+ .+||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999996 799999987521 01 12345667777777755543322 3699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
|+++|++|||||||++||+++.+.+.+.|+++.+ +++|+|++||++..+..||+|++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998753 378999999999998899999985
No 256
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.4e-43 Score=345.21 Aligned_cols=173 Identities=30% Similarity=0.557 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~ 512 (680)
-|+++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+++. +.+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 7999999999999999999999999999999999999999999999999998874 457889
Q ss_pred EEEEccCC----cCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 513 IGFVGQEP----QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 513 I~~V~Qd~----~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
++||+|++ .+++.|++||+.++. . ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-~-----------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-L-----------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-h-----------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 345689999998762 1 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
.+|++|||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998853 36899999999998877 999999999975
No 257
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-43 Score=339.89 Aligned_cols=171 Identities=61% Similarity=0.951 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++++|++. +.++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.++.+++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 236999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
|++|++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCE
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 651 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~ 651 (680)
||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999873 3589999999999999999999999985
No 258
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.5e-42 Score=346.52 Aligned_cols=186 Identities=32% Similarity=0.464 Sum_probs=164.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHh-hc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~L-R~ 511 (680)
++++||+++|++ +++|+|+||++++||.+||+|+||||||||+++|+|+ ++|++|+|++||.++.+.+.... |+
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999974 3699999999999999999999999999999999999 68999999999999999887654 55
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
.++||+|++.+|.+ |+++|+ ... ...||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~---------~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYV---------NEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhc---------cccCCHHHHHHHHHHHHHhcC
Confidence 69999999999875 444444 011 136999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh--hcCEEEEEeCCEEEEecChHHHh
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~--~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|+||||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998853 3689999999999998 69999999999999999 55554
No 259
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-42 Score=380.88 Aligned_cols=228 Identities=33% Similarity=0.496 Sum_probs=190.1
Q ss_pred cEEEEEEEEEcCCC--------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee--CCC
Q 005740 434 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP--LTD 503 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~--------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d--i~~ 503 (680)
-++++||+..|..+ ....+++||||++++||++||||+||||||||.+.|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 12458999999999999999999999999999999999999999999999977 333
Q ss_pred CCHHHhhccEEEEccCCcCc---cccHHHHHhcCCC--CC---C-CHHHHHHHHHHhcHHH-HHHcCCCCcccccCCCCC
Q 005740 504 LDIRWLREKIGFVGQEPQLL---QMDIKSNIMYGCP--KD---V-KNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 573 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF---~gTI~eNI~~g~~--~~---~-s~eei~~A~~~a~l~d-fI~~LP~G~dT~vge~~L 573 (680)
-+...+|+++-+|+|||+=. ..||+++|.--.. .. + .++.+.+.++.+++.+ +..+-|+ .|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~---------el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH---------EL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch---------hc
Confidence 34556888999999999844 6799999963210 01 1 1233556666666654 3444443 69
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 574 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
|||||||+||||||..+|++||+||||||||+-+.+.|.+.|.++.++ -|-|.|+|||.++.++. ||||+||++|+|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999999865 47899999999999988 999999999999
Q ss_pred EEecChHHHhhc-CcHHHHHH
Q 005740 653 IEVGNHAELLHK-GRLYAKLV 672 (680)
Q Consensus 653 ve~Gth~eLl~~-~g~Y~~L~ 672 (680)
||.|+.+++.+. ...|.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHH
Confidence 999999999986 66776544
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.9e-42 Score=335.63 Aligned_cols=164 Identities=36% Similarity=0.528 Sum_probs=151.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5799999999742 46999999999999999999999999999999999999999999999983 6899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
||+|++.++++|++||+.++ ....||||||||++||||++++|++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999764 12479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCE
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 651 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~ 651 (680)
||||||++||+++.+.+.+.++++ ++|+|+|||+++....||+|++|++|-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999875 479999999999999999999999863
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.3e-42 Score=354.60 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|++||.++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheE
Confidence 356788874 27999999999999999999999999999999999995 5999999999999988888999999
Q ss_pred EEccCCc-CccccHHHHHhcCCCCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 515 FVGQEPQ-LLQMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 515 ~V~Qd~~-LF~gTI~eNI~~g~~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
||+|++. ++..|++||+.++.....+ ++++.++++..++.+...+.+ ..||||||||++||||++.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 9999985 5578999999987321112 233455555555544332211 3799999999999999997
Q ss_pred -------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHH
Q 005740 590 -------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 590 -------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
+|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 6799999999999999999999999998853 378999999999966 56999999999999999999998
Q ss_pred hhcCcHHHHHH
Q 005740 662 LHKGRLYAKLV 672 (680)
Q Consensus 662 l~~~g~Y~~L~ 672 (680)
... ...++.+
T Consensus 221 ~~~-~~~~~~~ 230 (248)
T PRK03695 221 LTP-ENLAQVF 230 (248)
T ss_pred hCc-hHHHHHh
Confidence 753 3344444
No 262
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.3e-42 Score=352.64 Aligned_cols=207 Identities=30% Similarity=0.441 Sum_probs=170.0
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc-ccHHHHH
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 531 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~-gTI~eNI 531 (680)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5899999999999999999999999999999999999999999999999775532 489999999997 6999999
Q ss_pred hcCCC---CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 005740 532 MYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 604 (680)
Q Consensus 532 ~~g~~---~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 604 (680)
.++.. +..+++ ++.++++..++.++..+.| ..||||||||++||||++.+|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 87521 123322 3455566666554433322 3699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh----------cCcHHHHHHH
Q 005740 605 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH----------KGRLYAKLVK 673 (680)
Q Consensus 605 ~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~----------~~g~Y~~L~~ 673 (680)
+.+.+.+.+.|.++.++ .++|+|+|||+++.+.. ||+|++|++|+|++.|+..+++. .++.|+++.+
T Consensus 147 ~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEE--HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRLEVVEDPSYYDLRN 224 (230)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceeccCCCCcchhhhccCcHHHHHHH
Confidence 99999999999987532 36899999999998765 99999999999999998766541 2455666655
Q ss_pred Hh
Q 005740 674 RQ 675 (680)
Q Consensus 674 ~q 675 (680)
.+
T Consensus 225 ~~ 226 (230)
T TIGR01184 225 EA 226 (230)
T ss_pred HH
Confidence 44
No 263
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-43 Score=353.62 Aligned_cols=211 Identities=37% Similarity=0.563 Sum_probs=188.2
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh----hccEEEEccCCcCc-ccc
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMD 526 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L----R~~I~~V~Qd~~LF-~gT 526 (680)
-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|+|++||.|+..++.++| |+++++|+|..-|| +.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 3789999999999999999999999999999999999999999999999999999888 46799999999999 789
Q ss_pred HHHHHhcCCC-CCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 527 IKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 527 I~eNI~~g~~-~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
|.||..||.. ... .++...++++.+|+++|-.+.|+ .||||++||+.|||||..||+||++|||.|
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~---------eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN---------ELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc---------cccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 9999999942 112 24457789999999999888886 589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEecChHHHhhc--CcHHHHHHH
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK--GRLYAKLVK 673 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~Gth~eLl~~--~g~Y~~L~~ 673 (680)
||||--....|+-|.++.+. -+||++.|||.|.. ++-.|||..|++|+|++.||++|++.+ +.+-+++++
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred hcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 99999999999999888765 36899999999966 677999999999999999999999976 344455544
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.7e-42 Score=343.23 Aligned_cols=196 Identities=22% Similarity=0.343 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 36999999999999999999999999999999999999999999999999987654 57889999
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCe
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~I 593 (680)
|++|++.++ +.|++||+.+.. +..+++++.++++..++.++..+.+ ..||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 689999999873 3456778888889888876543221 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc-hHhhcCEEEEE
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVI 647 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls-ti~~aD~I~vl 647 (680)
|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+.. ....||+.+++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999988753 3789999999765 55668998887
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=397.23 Aligned_cols=229 Identities=30% Similarity=0.475 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCC--------CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC
Q 005740 434 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 505 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~--------~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~ 505 (680)
-|+++||+++|+.+. +.++|+||||+|++||++||||+||||||||+++|+|+.+|++|+|+++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 136999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HhhccEEEEccCCc--Cc-cccHHHHHhcCCC-CCC-C----HHHHHHHHHHhcHH-HHHHcCCCCcccccCCCC
Q 005740 506 IR---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 572 (680)
Q Consensus 506 ~~---~LR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~-~~~-s----~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~ 572 (680)
.. .+|++|+||+|++. ++ ..||.||+.++.. ... + ++++.++++..++. +...+.| ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 43 46789999999983 66 4699999976410 011 1 23455666666663 3333333 26
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 573 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
||||||||++|||||+.+|++||||||||+||..+.+.|.+.|+++.++ .|.|+|+|||+++.+.. ||+|+||++|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998642 37899999999999876 99999999999
Q ss_pred EEEecChHHHhhc-CcHHHH-HHH
Q 005740 652 IIEVGNHAELLHK-GRLYAK-LVK 673 (680)
Q Consensus 652 Ive~Gth~eLl~~-~g~Y~~-L~~ 673 (680)
|+|.|+.+++... ...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999864 344543 443
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2e-42 Score=339.95 Aligned_cols=179 Identities=37% Similarity=0.586 Sum_probs=161.6
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+++||+|+|++ +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+++.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 57999999974 369999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEE
Q 005740 516 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 595 (680)
Q Consensus 516 V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILI 595 (680)
++| +++..++.+++.+.+ ..||||||||++||||++++|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 667777776654422 3699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEec
Q 005740 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 596 LDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~G 656 (680)
|||||++||+++.+.+.+.|+++.++ .++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988531 268999999999997 569999999999998764
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.6e-42 Score=389.35 Aligned_cols=215 Identities=29% Similarity=0.433 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh-cc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR-~~ 512 (680)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999888776665 56
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCCCC-CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~~~-~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
|+||+|++.+|. .|++||+.++.... ..++++.++++..++.++ ++..+ ..||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSA--GSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCCh--hhCCHHHHHHHHHHHHHHcC
Confidence 999999999886 59999999873211 113445555555554322 22222 36999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||++..+.. ||+|++|++|+|++.|+++++.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998853 37899999999998865 99999999999999999998764
No 268
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.9e-42 Score=350.25 Aligned_cols=207 Identities=30% Similarity=0.435 Sum_probs=169.0
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC----CCceEEECCeeCCCCCHHHhhccEEEEccCCc-Ccc--
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LLQ-- 524 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p----~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~-LF~-- 524 (680)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++||.++.+. +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998765 233468999999995 443
Q ss_pred ccHHHHHhcCCC----CC-CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 525 MDIKSNIMYGCP----KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 525 gTI~eNI~~g~~----~~-~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
.|+.||+.+... .. ..++++.++++..++.+ + ++.... ..||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 589999865311 01 11234566666666542 1 112222 379999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc-CcHHHH
Q 005740 598 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 670 (680)
Q Consensus 598 EaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~-~g~Y~~ 670 (680)
|||++||+++.+.+.+.|+++.++ .++|+|+++|+++.+. .||+|++|++|++++.|+++++... .+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQL--FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 999999999999999999988532 3689999999999986 5999999999999999999999865 344443
No 269
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-42 Score=344.01 Aligned_cols=196 Identities=21% Similarity=0.381 Sum_probs=165.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999964 369999999999999999999999999999999999999999999999999875 4567889999
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCe
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~I 593 (680)
|++|++.+| ..|++||+.++......++++.++++..++.+. .+..+ ..||||||||++||||++++|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC--GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh--hhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999987 689999999873111223344455554444332 22222 26999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEE
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 646 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~v 646 (680)
|||||||++||+.+.+.+.+.|+++.+ +++|+|++||+.+.+.+||.-++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999998753 37899999999999999997554
No 270
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9e-42 Score=329.98 Aligned_cols=160 Identities=36% Similarity=0.560 Sum_probs=149.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~I 513 (680)
|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.++.+.+. +..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999974 369999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCe
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~I 593 (680)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEE
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 654 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive 654 (680)
|||||||++||+++.+.+.+.|+++.+ +++|+|++||++..+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998853 37899999999998765 99999999999976
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=391.03 Aligned_cols=216 Identities=28% Similarity=0.437 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCCHHH-hh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~~~~~~-LR 510 (680)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|++||.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998877654 46
Q ss_pred ccEEEEccCCcCcc-ccHHHHHhcCCCC----CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005740 511 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 583 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~----~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaI 583 (680)
+.|+||+|++.+|. .|++||+.++... ..+.++..+. +.++++.+ |++..... ..||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999999886 5999999987321 1122222111 22233332 22222222 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+.+|+|||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999999999853 47899999999999865 9999999999999999988764
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=390.44 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~ 512 (680)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998887655 3567
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCCC-----C---CCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----D---VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~---~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
|+||+|++.+|. .|++||+.++..+ . .+.+ ++.++++..++ ++-.+..+ .+|||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~~--~~LSgG~~q 152 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-------KVDLDEKV--ANLSISHKQ 152 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-------CCCcccch--hhCCHHHHH
Confidence 999999999886 5999999886311 1 1111 22333333332 22222222 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|+.
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 99999999999999999999999999999999999999863 37899999999999865 999999999999999998
Q ss_pred HHHhh
Q 005740 659 AELLH 663 (680)
Q Consensus 659 ~eLl~ 663 (680)
+++..
T Consensus 230 ~~~~~ 234 (510)
T PRK09700 230 SDVSN 234 (510)
T ss_pred hhCCH
Confidence 88653
No 273
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-41 Score=341.54 Aligned_cols=197 Identities=21% Similarity=0.320 Sum_probs=170.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999998654 45788999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
|++|++.++. .|++||+.++.. ...+++++.++++..++.++..+.+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999998885 699999987631 1134567888888888876654322 369999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEE
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 647 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl 647 (680)
++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||+++.+.. .+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998753 36899999999999955 5677766
No 274
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=388.28 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=177.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~ 512 (680)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999997766544 4678
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHhcHHHHHHcC--CCCcccccCCCCCChHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSL--PCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~s~eei~~A~~~a~l~dfI~~L--P~G~dT~vge~~LSGGQrQRIaIA 584 (680)
|+||+|++.+|. -|++||+.++... ..+.++..+. +.+.++.+ ++-.+..+ .+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~--~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARLNLRFSSDKLV--GELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHcCCCCCccCch--hhCCHHHHHHHHHH
Confidence 999999998885 5999999987311 1122222111 22233332 22122222 37999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||+.+|++|||||||++||+++.+.+.+.|+++.+ .++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999999853 37899999999998864 9999999999999999988764
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.2e-41 Score=348.80 Aligned_cols=195 Identities=29% Similarity=0.450 Sum_probs=160.7
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEc-cCCcCc-cccH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 527 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~-Qd~~LF-~gTI 527 (680)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. ...+|++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 356788999997 666776 6799
Q ss_pred HHHHhcCCC-CCCCHHHH----HHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 005740 528 KSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 602 (680)
Q Consensus 528 ~eNI~~g~~-~~~s~eei----~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSa 602 (680)
+||+.++.. ...+.++. .++++..++ ++..|+.+ ..||||||||++||||++.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDL-------EELLDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhHhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999977521 12333333 233333333 23334443 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 603 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 603 LD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
||+++.+.+.+.|+++.++ .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE--RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999988532 36899999999998755 9999999999999875
No 276
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.2e-41 Score=391.86 Aligned_cols=202 Identities=28% Similarity=0.464 Sum_probs=173.1
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC--CceEEECCeeCCCCCHHHhhccEEEEccCCcCcc-cc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MD 526 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~--~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~-gT 526 (680)
+++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|++||.++. ...++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 999999999874 245678999999999995 69
Q ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHhcHHHHHH--cCCCCcccccCC---CCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 527 IKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 527 I~eNI~~g~----~~~~s~eei~~A~~~a~l~dfI~--~LP~G~dT~vge---~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
++||+.++. +.+.+++|..+.+ ++.++ .|++..||.+|+ +.||||||||++|||||++||+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998852 1134444433222 33343 345566999987 389999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch--HhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 598 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 598 EaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst--i~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
||||+||+.++..+.+.|+++.+ +|+|+|+++|+++. .+.||+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999863 47999999999984 46799999999999999999999974
No 277
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-41 Score=383.38 Aligned_cols=212 Identities=23% Similarity=0.274 Sum_probs=185.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 35999999999999999999999999999999999999999999999999888777777888899
Q ss_pred EEccCCcC---------ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 515 FVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 515 ~V~Qd~~L---------F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+|+|++.+ +..|++||+.++ . ..++++.++++..++.+.....| ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V--KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-h--hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHHH
Confidence 99998753 246899998765 2 13456777888877766544333 369999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||+.+|++||||||||+||+++.+.+.+.|+++.+ +|+|+|+|+|++..+.. ||+|++|++|+|++.|+.+++++.
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999999853 37899999999998865 999999999999999999988753
No 278
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-41 Score=339.75 Aligned_cols=196 Identities=24% Similarity=0.355 Sum_probs=170.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. . ..|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999964 369999999999999999999999999999999999999999999999998753 2 2888999
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
||+|++.++ +.|++||+.+... .+..++++.++++..++.++.. .|. ..||||||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~--------~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPF--------GYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999988775 6899999987521 1234567888888888876542 222 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
+|||||||++||+.+.+.+.+.|+++.+ +++|+|++||++..+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998753 37899999999999998 99988854
No 279
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=392.30 Aligned_cols=223 Identities=26% Similarity=0.409 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC----------
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 502 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~---------- 502 (680)
-|+++||+++|++.. +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996421 246999999999999999999999999999999999999999999999998652
Q ss_pred CCCHH---Hhh-ccEEEEccCC--cCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccC
Q 005740 503 DLDIR---WLR-EKIGFVGQEP--QLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVD 569 (680)
Q Consensus 503 ~~~~~---~LR-~~I~~V~Qd~--~LF~-gTI~eNI~~g~~--~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vg 569 (680)
+.+.. .+| +.||||+|+| .++. .||+|||.++.. ...+. +++.++++..++.+.- .-.+..+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~~~~- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILSRYP- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHhCCC-
Confidence 22322 334 5799999998 5775 699999987521 01222 3444555555542100 0012222
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe
Q 005740 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 648 (680)
Q Consensus 570 e~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~ 648 (680)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||++..+.. ||||++|+
T Consensus 167 -~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~--~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 167 -HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE--MSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred -ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 369999999999999999999999999999999999999999999998642 37899999999999855 99999999
Q ss_pred CCEEEEecChHHHhhc
Q 005740 649 DGRIIEVGNHAELLHK 664 (680)
Q Consensus 649 ~G~Ive~Gth~eLl~~ 664 (680)
+|+|++.|++++++..
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998754
No 280
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.5e-41 Score=387.13 Aligned_cols=219 Identities=30% Similarity=0.516 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCC--------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC
Q 005740 434 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 505 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~--------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~ 505 (680)
-|+++||+++|+.+ .++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|++||.++.+++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1246999999999999999999999999999999999999 59999999999998776
Q ss_pred HHH---hhccEEEEccCC--cCcc-ccHHHHHhcCCC---CCCC----HHHHHHHHHHhcHH-HHHHcCCCCcccccCCC
Q 005740 506 IRW---LREKIGFVGQEP--QLLQ-MDIKSNIMYGCP---KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 571 (680)
Q Consensus 506 ~~~---LR~~I~~V~Qd~--~LF~-gTI~eNI~~g~~---~~~s----~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~ 571 (680)
... +|++|+||+|++ .+|. .|++||+.++.. ...+ ++++.++++..++. +...+.| .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP---------A 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC---------c
Confidence 543 578899999998 3665 699999987521 0111 23344555555542 2222222 3
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCC
Q 005740 572 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 650 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G 650 (680)
+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||++..+.. ||+|++|++|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 69999999999999999999999999999999999999999999988642 36899999999998865 9999999999
Q ss_pred EEEEecChHHHhhc
Q 005740 651 RIIEVGNHAELLHK 664 (680)
Q Consensus 651 ~Ive~Gth~eLl~~ 664 (680)
+|++.|+.+++++.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999864
No 281
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-41 Score=340.71 Aligned_cols=198 Identities=25% Similarity=0.318 Sum_probs=166.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++|++++|++ +++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||+++.+. ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998753 346689
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCC-CCC-HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPK-DVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~-~~s-~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
+|++|++.+|.+ |++||+.++... +.. ++.+.++++..++.+ .+++.+ ..||||||||++||||++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~--~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-------YEDTLV--RQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-------hccCCh--hhCCHHHHHHHHHHHHHhcC
Confidence 999999999976 999999875211 122 333445555554432 333333 36999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeC
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD 649 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~ 649 (680)
|++|||||||++||+++.+.+.+.|+++.+ +++|+|++||+++.+. .||+|++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999988753 4689999999999885 5999999874
No 282
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=385.23 Aligned_cols=210 Identities=28% Similarity=0.427 Sum_probs=174.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~ 512 (680)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976543 457889
Q ss_pred EEEEccCCcCccc-cHHHHHhcCCCC---C-CCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 513 IGFVGQEPQLLQM-DIKSNIMYGCPK---D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 513 I~~V~Qd~~LF~g-TI~eNI~~g~~~---~-~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|+||+|++.+|.. |++||+.++... . .+.+ ++.++++..++ ++-.+..+ ..||||||||++|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~--~~LSgGq~qrv~l 151 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV-------DIDPDTPL--KYLSIGQRQMVEI 151 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC-------CCCcCCch--hhCCHHHHHHHHH
Confidence 9999999998864 999999986311 1 1222 23333333322 11122222 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||++..+.. ||+|++|++|+|++.++.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998853 47899999999998865 999999999999987653
No 283
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.4e-41 Score=384.15 Aligned_cols=223 Identities=29% Similarity=0.439 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCC-CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCCHH
Q 005740 434 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~-~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~~~~ 507 (680)
-|+++||+++|++. .++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124699999999999999999999999999999999999997 799999999999887754
Q ss_pred H---hh-ccEEEEccCCc--Cc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCC
Q 005740 508 W---LR-EKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 574 (680)
Q Consensus 508 ~---LR-~~I~~V~Qd~~--LF-~gTI~eNI~~g~--~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LS 574 (680)
. +| ++||||+|++. ++ ..|++||+.++. ....+ ++++.++++..++.++... .+..+ .+||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~--~~LS 158 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTDYP--HQLS 158 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhhCC--cccC
Confidence 3 34 58999999985 44 368999986421 00112 2445666666666432100 11111 3699
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv 653 (680)
||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.++ .++|+|+|||++..+.. ||+|++|++|+|+
T Consensus 159 gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998542 37899999999998864 9999999999999
Q ss_pred EecChHHHhhc
Q 005740 654 EVGNHAELLHK 664 (680)
Q Consensus 654 e~Gth~eLl~~ 664 (680)
+.|+.++++..
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 284
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-41 Score=345.64 Aligned_cols=226 Identities=30% Similarity=0.469 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-C----CCceEEECCeeCCCCCHHH
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p----~~G~I~idG~di~~~~~~~ 508 (680)
++++|++-.|+... ...+++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.+||.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999987532 2469999999999999999999999999999999999998 4 6799999999999999886
Q ss_pred hh----ccEEEEccCCcC-cc--cc----HHHHHhcCCCCCC-C----HHHHHHHHHHhcHHH---HHHcCCCCcccccC
Q 005740 509 LR----EKIGFVGQEPQL-LQ--MD----IKSNIMYGCPKDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVD 569 (680)
Q Consensus 509 LR----~~I~~V~Qd~~L-F~--gT----I~eNI~~g~~~~~-s----~eei~~A~~~a~l~d---fI~~LP~G~dT~vg 569 (680)
+| +.||+|+|||.- |+ -| |.|=+.... .. + .+++.++++.+++.+ -+.+-|.
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh------- 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPH------- 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc-------
Confidence 53 479999999762 22 23 344444321 11 2 335677777777754 2334443
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe
Q 005740 570 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 648 (680)
Q Consensus 570 e~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~ 648 (680)
.||||||||+.||-|++.+|++||-||||+|||..+.++|.+.|+++.++ .|.|+|+|||.++.+.. ||||+||-
T Consensus 153 --elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 153 --ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE--KGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred --ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 68999999999999999999999999999999999999999999999864 58999999999998765 99999999
Q ss_pred CCEEEEecChHHHhhc--CcHHHHHHH
Q 005740 649 DGRIIEVGNHAELLHK--GRLYAKLVK 673 (680)
Q Consensus 649 ~G~Ive~Gth~eLl~~--~g~Y~~L~~ 673 (680)
.|+|||.|+-+|+.++ +.+-+.|++
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999999986 334445544
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=381.59 Aligned_cols=213 Identities=26% Similarity=0.382 Sum_probs=176.2
Q ss_pred EEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhccEEE
Q 005740 437 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 515 (680)
Q Consensus 437 f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~I~~ 515 (680)
++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4789999964 369999999999999999999999999999999999999999999999999976654 446788999
Q ss_pred EccCCcCc-cccHHHHHhcCCCC--C--CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 005740 516 VGQEPQLL-QMDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 516 V~Qd~~LF-~gTI~eNI~~g~~~--~--~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
|+|++.+| ..|++||+.++... . .+.++..+ .+.+.++.+ |++..... .+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99999877 46999999987311 1 12222221 123334433 33332222 379999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
++|++|||||||++||+++.+.+.+.|+++.+ .|+|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999998853 47899999999998864 9999999999999999988764
No 286
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.2e-41 Score=337.48 Aligned_cols=195 Identities=24% Similarity=0.324 Sum_probs=166.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999974 36999999999999999999999999999999999999999999999999998765 46788999
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
|++|++.+|. .|++||+.+.... ...++++.++++..++.++....| ..||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 7999999875211 112346788888888877654322 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEE
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 646 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~v 646 (680)
+|||||||++||+.+.+.+.+.|.++.+ +++|+|+|||+...+. ||+.++
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999998753 3789999999986553 355543
No 287
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-41 Score=324.64 Aligned_cols=215 Identities=28% Similarity=0.499 Sum_probs=185.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++..+++.+|++ -..+++||||+++.||.+||.||+||||||+++.|..|..|++|+|++||.|+... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999985 24589999999999999999999999999999999999999999999999999874 567799999
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
+++-+.-|+ .-|.+|||.|... .+.++. ++.+.-|.-++.|.+ |+.+| ++|-|+|||++|||||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~--~~S~G~kqkV~iARAlv 149 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG--EFSTGMKQKVAIARALV 149 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh--hhchhhHHHHHHHHHHh
Confidence 999888888 5699999987421 123333 344444555555543 34444 49999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+||+|+|||||||+||--+.+.+++.+.++++ .||++|.-||-++.++ -||+++++.+|+++..|+.+++.++
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999999864 4899999999999999 6999999999999999999999875
No 288
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=8e-41 Score=388.47 Aligned_cols=217 Identities=35% Similarity=0.491 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh---
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L--- 509 (680)
-|+++||+++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999999987764
Q ss_pred -hccEEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 510 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 -R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
|+.++||+|++.+|. .|+.||+.++... ..+ ++++.++++..++.+++.+.| ..||||||||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 678999999999996 5999999875210 111 223444455555544443333 379999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHh
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|||||+++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||++..++.||++++|++|+++++|+.+|..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999998853 379999999999999999999999999999999999886
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=341.70 Aligned_cols=194 Identities=33% Similarity=0.527 Sum_probs=171.7
Q ss_pred cEEEEEEEEEcCCCCC------CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH
Q 005740 434 HVQFVNISFHYPSRPT------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~------~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~ 507 (680)
-++.+|++..|+.+.. ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3788999999975321 36899999999999999999999999999999999999999999999999988877
Q ss_pred HhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~d-fI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
. +..++++.+.++.+|+.+ +..+.|+ .|||||||||+||||
T Consensus 82 --------------------------~---~~~~~~v~elL~~Vgl~~~~~~ryPh---------elSGGQrQRi~IARA 123 (268)
T COG4608 82 --------------------------K---EERRERVLELLEKVGLPEEFLYRYPH---------ELSGGQRQRIGIARA 123 (268)
T ss_pred --------------------------h---hHHHHHHHHHHHHhCCCHHHhhcCCc---------ccCchhhhhHHHHHH
Confidence 1 234577999999999876 5566664 589999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc-
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~- 664 (680)
|.-||+++|+||||||||.-.+++|.+.|..+.+. .|-|.+.|||.++.+++ ||||.||..|+|||.|+-+|+.++
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999998764 57899999999999998 999999999999999999999985
Q ss_pred CcHHH
Q 005740 665 GRLYA 669 (680)
Q Consensus 665 ~g~Y~ 669 (680)
.-.|-
T Consensus 202 ~HpYT 206 (268)
T COG4608 202 LHPYT 206 (268)
T ss_pred CCHHH
Confidence 33453
No 290
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.9e-41 Score=370.09 Aligned_cols=220 Identities=30% Similarity=0.465 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCC-CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC----CceEEECCeeCCCCCHHH
Q 005740 434 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~-~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~----~G~I~idG~di~~~~~~~ 508 (680)
-++++|++..|....+ ..+++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|++||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25999999999999999999999999999999999999988 899999999999999877
Q ss_pred hh----ccEEEEccCCc-Cccc--cHHHHHh----cCCC--CCCCHHHHHHHHHHhcHHHHHHc--CCCCcccccCCCCC
Q 005740 509 LR----EKIGFVGQEPQ-LLQM--DIKSNIM----YGCP--KDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDDDLL 573 (680)
Q Consensus 509 LR----~~I~~V~Qd~~-LF~g--TI~eNI~----~g~~--~~~s~eei~~A~~~a~l~dfI~~--LP~G~dT~vge~~L 573 (680)
+| +.|++|+|||. .|+- ||.+-|+ .... .+.-.++..+.++.+++.+-... .| ..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP---------heL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP---------HQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC---------ccc
Confidence 64 56999999987 6654 5555443 3211 11123455666667766443332 22 379
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 574 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
|||||||+.||+||.+||++||+||||.|||+.++++|.+.|+++.++ .|.++|+|||.+..+.. ||||+||++|+|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e--~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE--LGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH--cCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 58999999999999876 999999999999
Q ss_pred EEecChHHHhhc
Q 005740 653 IEVGNHAELLHK 664 (680)
Q Consensus 653 ve~Gth~eLl~~ 664 (680)
||.|+.++++++
T Consensus 234 VE~G~~~~i~~~ 245 (539)
T COG1123 234 VETGPTEEILSN 245 (539)
T ss_pred EEecCHHHHHhc
Confidence 999999999986
No 291
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6e-41 Score=340.67 Aligned_cols=202 Identities=28% Similarity=0.418 Sum_probs=162.4
Q ss_pred EEEEEEEEEcCCC---C-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC--C--eeCCCCCH
Q 005740 435 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--G--FPLTDLDI 506 (680)
Q Consensus 435 I~f~nVsF~Y~~~---~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id--G--~di~~~~~ 506 (680)
|+++||+++|++. . ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++| | .++.+++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1369999999999999999999999999999999999999999999998 4 26766665
Q ss_pred HH---h-hccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChH
Q 005740 507 RW---L-REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 576 (680)
Q Consensus 507 ~~---L-R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGG 576 (680)
.. + ++.++||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.+... +.. -..||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~--~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HLP--PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hCC--cccCCHH
Confidence 53 3 467999999999885 599999976311 1122 233444445444433221 111 1369999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEE
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 647 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl 647 (680)
||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ +|+|+|+|||++..+. .||+|+.+
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999999999853 3789999999999886 69999876
No 292
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.1e-41 Score=391.59 Aligned_cols=219 Identities=26% Similarity=0.430 Sum_probs=184.8
Q ss_pred ccEEEEEEEEEcCCCC------CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCC
Q 005740 433 GHVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTD 503 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~------~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~ 503 (680)
.+++|.+|. +++... ++++|+|+|++++|||.+||+||||||||||+++|.|..+|. +|+|++||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 357777777 664321 467999999999999999999999999999999999999885 899999999875
Q ss_pred CCHHHhhccEEEEccCCcCc-cccHHHHHhcCCC----CCCCHHHHHHHHHHhcHHHHHHc--CCCCcccccCC----CC
Q 005740 504 LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD----DL 572 (680)
Q Consensus 504 ~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~----~~~s~eei~~A~~~a~l~dfI~~--LP~G~dT~vge----~~ 572 (680)
...+|+.+|||+|++.+| +.||+|||.|+.. .+.+.++ +...+++.++. |++..||.||+ +.
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 467899999999999999 4699999998631 1223332 22234455554 55678999997 37
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc--hHhhcCEEEEEeCC
Q 005740 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDG 650 (680)
Q Consensus 573 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls--ti~~aD~I~vl~~G 650 (680)
||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++.+ +|+|+|+++|+++ ..+.||+|++|++|
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 999999999999999999999999999999999999999999999863 4899999999996 36789999999999
Q ss_pred EEEEecChHHHhh
Q 005740 651 RIIEVGNHAELLH 663 (680)
Q Consensus 651 ~Ive~Gth~eLl~ 663 (680)
+++++|+++|+.+
T Consensus 244 ~~v~~G~~~~~~~ 256 (617)
T TIGR00955 244 RVAYLGSPDQAVP 256 (617)
T ss_pred eEEEECCHHHHHH
Confidence 9999999999853
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.1e-41 Score=381.40 Aligned_cols=224 Identities=25% Similarity=0.428 Sum_probs=177.2
Q ss_pred cEEEEEEEEEcCC--CCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC-Cee---CCCCC--
Q 005740 434 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 505 (680)
Q Consensus 434 ~I~f~nVsF~Y~~--~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id-G~d---i~~~~-- 505 (680)
-|+++||+++|++ +.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 112469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHhhccEEEEccCCcCcc-ccHHHHHhcCCCCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 -IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 -~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
...+|++|+||+|++.+|. .|++||+.++...... ++++.++++..++.+.- .++-.++.+ ..|||||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~--~~LSgGq~q 434 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK--AEEILDKYP--DELSEGERH 434 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh--hhCCHHHHH
Confidence 2356788999999998886 5999999864110111 22344445554442100 000012222 369999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||++..+.. ||+|++|++|+|++.|++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999988542 37899999999999875 999999999999999999
Q ss_pred HHHhh
Q 005740 659 AELLH 663 (680)
Q Consensus 659 ~eLl~ 663 (680)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 98764
No 294
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.4e-41 Score=340.99 Aligned_cols=196 Identities=25% Similarity=0.445 Sum_probs=165.7
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcC---ccccHHHHHhcC
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 534 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~L---F~gTI~eNI~~g 534 (680)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++||+|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357889999999987 468999999876
Q ss_pred CC--------C-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 005740 535 CP--------K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605 (680)
Q Consensus 535 ~~--------~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 605 (680)
.. + ...++++.++++..++.++....| ..||||||||++||||++++|++|||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 21 0 112345777888888765543322 25999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 606 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 606 ~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
.+.+.+.+.|+++.+ +++|+|++||+++.+. .||+|+++ +|+|++.|+++++.+. ..+.+++
T Consensus 147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-APWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-HHHHHHh
Confidence 999999999998853 3789999999999876 59999999 7999999999998764 3455554
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.2e-41 Score=379.67 Aligned_cols=214 Identities=27% Similarity=0.448 Sum_probs=176.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCCHHH-hhc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~~~~~~-LR~ 511 (680)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|++||.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3699999999999999999999999999999999999997 7999999999998877654 467
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHhcHHHHHHcC--CCCc-ccccCCCCCChHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSL--PCGY-ETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~s~eei~~A~~~a~l~dfI~~L--P~G~-dT~vge~~LSGGQrQRIa 582 (680)
.|+||+|++.+|. -|++||+.++... ..+.++..+ .+.+.++.+ ++.+ +..+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~--~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLRELQLDADNVTRPV--GDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccCch--hhCCHHHHHHHH
Confidence 8999999998886 5999999987310 012222211 122333332 2111 1222 369999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHH
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eL 661 (680)
|||||+.+|++|||||||++||+++.+.+.+.|+++.+ +|+|+|+|||++..+.. ||+|++|++|+|++.|+.++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999999853 47899999999999875 999999999999999987654
No 296
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=9e-41 Score=380.05 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=177.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC--CCCCceEEEC---------------
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 497 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~G~I~id--------------- 497 (680)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHhhccEEEEccC-CcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhc
Q 005740 498 --------GFPLT-------DLD---IRWLREKIGFVGQE-PQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 552 (680)
Q Consensus 498 --------G~di~-------~~~---~~~LR~~I~~V~Qd-~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~ 552 (680)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 56775 599999987521 1122 234556666666
Q ss_pred HHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEe
Q 005740 553 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 632 (680)
Q Consensus 553 l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIa 632 (680)
+.++..+.| .+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.++ .|+|+|+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 655443322 369999999999999999999999999999999999999999999998542 378999999
Q ss_pred cCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 633 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 633 HRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|++..+.. ||+|++|++|+|++.|+++++.++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999865 999999999999999999988653
No 297
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-41 Score=314.16 Aligned_cols=194 Identities=29% Similarity=0.488 Sum_probs=167.6
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
+.++|+|+||++.+||.+||.||||||||||+|.++-+..|++|.+++.|.|++.++++.+|.+|+|+.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 005740 529 SNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 603 (680)
Q Consensus 529 eNI~~g~---~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 603 (680)
||+-|-- +...+.+...+-++.+++.+.+ +.. .+|||||||||||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998741 1122333333344444433332 222 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEE
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive 654 (680)
|+.+.+.|.+-|.++..+ ++..++.|||.... +++|||++-+-.|++-|
T Consensus 165 D~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999999888643 57899999999977 99999999999998743
No 298
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=7.6e-41 Score=331.42 Aligned_cols=176 Identities=31% Similarity=0.481 Sum_probs=150.5
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CCHHHhhccEEEEccCC--cCccc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQM 525 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--~~~~~LR~~I~~V~Qd~--~LF~g 525 (680)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999998 58889
Q ss_pred cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCC
Q 005740 526 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 600 (680)
Q Consensus 526 TI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaT 600 (680)
|++||+.++.. ...++ +++.++++..++.++..+.| ..||||||||++||||++++|++|||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999988521 12232 34666777777766655443 369999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 601 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 601 SaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
++||+++.+.+.+.|+++.+ +++|+|+|||++..
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence 99999999999999998853 37899999999864
No 299
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-40 Score=364.19 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=177.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.++++|++|+|+++..+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764335699999999999999999999999999999999999999999999999762
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
++.+.+.++ ..|++||+.++.. ...++++ +.++++.+++.+++.+.| ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 122333343 3599999987421 1233333 445677777776655433 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
+.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..+-+
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999999998753 47899999999999865 99999999999999999999987766
Q ss_pred HHHHHHH
Q 005740 667 LYAKLVK 673 (680)
Q Consensus 667 ~Y~~L~~ 673 (680)
.|.+.+.
T Consensus 236 ~~~~~~~ 242 (549)
T PRK13545 236 EFLKKYN 242 (549)
T ss_pred HHHHHHh
Confidence 6665543
No 300
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=325.13 Aligned_cols=221 Identities=28% Similarity=0.482 Sum_probs=184.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I 513 (680)
++++||+-.|.. .++|++|||++++||+++++|++|+||||+++.|+|+.+|.+|+|.++|.||...+.+.. |.-|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 689999999964 469999999999999999999999999999999999999999999999999999987774 7789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
+||||.-.+| +-||+||+.+|.. ...+++ .+...+++--+-+|. +...... ++|||||+|-+||||||+.+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~-~~~~~~----~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAY-ARRDKE----AQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhh-cccccc----cccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999 6799999999832 111111 111112222233342 2222222 38999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
|++|+|||||.+|-|.--++|.++|++++++ .+-|+++|-++.... +-|||-+||++|+|+.+|+-+||.++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999999999753 357999999999775 4699999999999999999999997643
No 301
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=379.83 Aligned_cols=219 Identities=24% Similarity=0.428 Sum_probs=177.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-CCCceEEECCeeCCCCCH-HHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~idG~di~~~~~-~~LR~ 511 (680)
-|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999999 599999999999875543 45678
Q ss_pred cEEEEccCC---cCc-cccHHHHHhcCCCCC------CCHHHHHHHHHHhcHHHHHHcCCCCccc-ccCC--CCCChHHH
Q 005740 512 KIGFVGQEP---QLL-QMDIKSNIMYGCPKD------VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQK 578 (680)
Q Consensus 512 ~I~~V~Qd~---~LF-~gTI~eNI~~g~~~~------~s~eei~~A~~~a~l~dfI~~LP~G~dT-~vge--~~LSGGQr 578 (680)
.|+||+|++ .+| ..|+.||+.++.... .+.++ ....+++.++.+ |++. .... ..||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 569999998762100 11111 112234445544 2321 1122 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++.+|+|||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||++++|++|+|+..|+
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999998864 37899999999998865 99999999999999998
Q ss_pred hHHHh
Q 005740 658 HAELL 662 (680)
Q Consensus 658 h~eLl 662 (680)
.+++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 88764
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-40 Score=331.20 Aligned_cols=191 Identities=21% Similarity=0.349 Sum_probs=162.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +.++ ++||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 3455 599999999999999999999999999999999999999999999987643 45699
Q ss_pred EEccCCc-CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCe
Q 005740 515 FVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 515 ~V~Qd~~-LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~I 593 (680)
|++|++. +|+.|++|||.++......++++.++++..++.++..+.+ ..||||||||++||||++++|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 4789999999986321124567788888888776654321 37999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEE
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 645 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~ 645 (680)
|||||||++||+++.+.+.+.+++..+ +++|+|+|||+++.++.||.|.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchhheec
Confidence 999999999999999999999976532 4789999999999999999764
No 303
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.5e-40 Score=338.01 Aligned_cols=196 Identities=25% Similarity=0.314 Sum_probs=156.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
+..+|++.+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~- 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG- 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc-
Confidence 667777777753 4699999999999999999999999999999999999999999999999986421 1111
Q ss_pred EEccCCcCccccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~-~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
.+..+.|++||+.++.. ...+.++ +.++++..++. +..++.+ ..||||||||++||||+++
T Consensus 94 -----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~--~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-------DFIDLPV--KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-------hhhhCCh--hhCCHHHHHHHHHHHHHhc
Confidence 12246799999987631 1123332 33344444433 3334443 3699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998753 3689999999999876 59999999999999876
No 304
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-40 Score=310.36 Aligned_cols=211 Identities=29% Similarity=0.430 Sum_probs=178.1
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh---
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L--- 509 (680)
-|+.++++..-++.. +..||++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|.+.|+++.+++.+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 478888888776432 2459999999999999999999999999999999999999999999999999999997753
Q ss_pred -hccEEEEccCCcCc-cccHHHHHhcCCC--CCCC---HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 510 -REKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 -R~~I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~s---~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
.+++|+|+|..+|. +-|-.||+..-.. .+.+ .+.-.+-++.+|+.+-+.+.| .+|||||+||+|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 46899999999988 7899999976421 1111 122344555565555554444 379999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEe
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~ 655 (680)
||||+...|+||+=||||-+||.+|-.+|.+.+.++..+ .|.|.++|||..+....|||++.|.+|+|++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre--~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh--cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999887654 58899999999999999999999999999864
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=340.79 Aligned_cols=199 Identities=23% Similarity=0.367 Sum_probs=164.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~ 528 (680)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||. +++++|++.++ ..|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46999999999999999999999999999999999999999999999994 46778888766 46999
Q ss_pred HHHhcCCC-CCCCHHHHH----HHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 005740 529 SNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 603 (680)
Q Consensus 529 eNI~~g~~-~~~s~eei~----~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 603 (680)
||++++.. ...+.++.. ++++..++.+++... -..||||||||++||||++.+|+||||||||++|
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99987421 123344443 344444444443221 1379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcCcHHHHHHH
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 673 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~ 673 (680)
|+.+.+.+.+.|.++.+ .++|+|+|||++..+.. ||+|++|++|+|++.|++++++++.+.|.+...
T Consensus 175 D~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 242 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFK 242 (264)
T ss_pred CHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHH
Confidence 99999999999988753 47899999999999865 999999999999999999999987665555443
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=341.14 Aligned_cols=225 Identities=31% Similarity=0.483 Sum_probs=190.5
Q ss_pred ccEEEEEEEEEcCCCCC--------CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 433 GHVQFVNISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~--------~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
.-++.+||...||-+.+ ..+.++|||++++||+++|||+|||||||+-..|+|+.+++ |+|.++|.||..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 35789999998874321 24789999999999999999999999999999999999877 9999999999999
Q ss_pred CHHH---hhccEEEEccCCc--Cc-cccHHHHHhcCC---CCCCC----HHHHHHHHHHhcHHHHHH-cCCCCcccccCC
Q 005740 505 DIRW---LREKIGFVGQEPQ--LL-QMDIKSNIMYGC---PKDVK----NEDIEWAAKQAYVHEFIL-SLPCGYETLVDD 570 (680)
Q Consensus 505 ~~~~---LR~~I~~V~Qd~~--LF-~gTI~eNI~~g~---~~~~s----~eei~~A~~~a~l~dfI~-~LP~G~dT~vge 570 (680)
+.++ +|+++-+|+|||+ |= ..||.+=|.=|. .+..| ++.+.+|++.+|++.-.. +.|+
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh-------- 425 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH-------- 425 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc--------
Confidence 8776 5899999999998 22 356666665442 23444 456788888888876543 3343
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC
Q 005740 571 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 649 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~ 649 (680)
.+|||||||||||||++-+|++++|||||||||-.-..+|.+.|+++.++ .+-+-++|+|.|+.++. ||+++||.+
T Consensus 426 -EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k--~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 426 -EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred -ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 58999999999999999999999999999999999999999999998763 57899999999999987 999999999
Q ss_pred CEEEEecChHHHhhc-CcHHH
Q 005740 650 GRIIEVGNHAELLHK-GRLYA 669 (680)
Q Consensus 650 G~Ive~Gth~eLl~~-~g~Y~ 669 (680)
|+|||+|.-+++.++ ...|.
T Consensus 503 GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHH
Confidence 999999999999986 44554
No 307
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=329.64 Aligned_cols=215 Identities=27% Similarity=0.456 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I 513 (680)
++.+|++.+|.+ -.+++||||++++||.+||+||+||||||++|++.|+|+|++|+|.++|.||..++.... |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999974 469999999999999999999999999999999999999999999999999999998875 6669
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-----------CC--CHH----HHHHHHHHhcHHHHHHcCCCCcccccCC--CCC
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCPK-----------DV--KNE----DIEWAAKQAYVHEFILSLPCGYETLVDD--DLL 573 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~~-----------~~--s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge--~~L 573 (680)
+--+|.+.+| +.|+.||+..|... .. .++ +..+.++.++ ++-.-.+ ++|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vg-----------L~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG-----------LGELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcC-----------CchhhcchhhcC
Confidence 9999999999 56999999987210 01 122 2222333333 3333333 379
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 574 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
|+||+.|+-|||||..+|++|+||||.++|.++....+.+.|++++++ .|.|+++|-|+++.+.. ||||+||+.|++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence 999999999999999999999999999999999999999999999753 46899999999999876 999999999999
Q ss_pred EEecChHHHhhcC
Q 005740 653 IEVGNHAELLHKG 665 (680)
Q Consensus 653 ve~Gth~eLl~~~ 665 (680)
+.+|+++|..++.
T Consensus 229 IAeG~P~eV~~dp 241 (250)
T COG0411 229 IAEGTPEEVRNNP 241 (250)
T ss_pred cccCCHHHHhcCH
Confidence 9999999987653
No 308
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=313.85 Aligned_cols=216 Identities=27% Similarity=0.438 Sum_probs=189.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||+|+|||||+|.|+|...|++|++.+||+++.+++..++-++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999999865 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcC-ccccHHHHHhcCCCCC-----CCHHH--HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 515 FVGQEPQL-LQMDIKSNIMYGCPKD-----VKNED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 515 ~V~Qd~~L-F~gTI~eNI~~g~~~~-----~s~ee--i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+.||+..| |.-|++|=+.+|..|. ..+++ ..+|+.++++..|-.+. | ..|||||+||+.+||.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y------~~LSGGEqQRVqlARv 149 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y------RTLSGGEQQRVQLARV 149 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h------hhcCchHHHHHHHHHH
Confidence 99999985 8999999999996443 22444 56677788776654321 1 3799999999999999
Q ss_pred Hcc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChH
Q 005740 587 ILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 587 ll~------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~ 659 (680)
|.. ++++|+||||||+||..-.+.+.+..+++.+ +|..|++|=|.|+.. ..||||++|.+|||+..|+++
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~---~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR---EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh---cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 976 4568999999999999999999999999874 478999999999875 559999999999999999999
Q ss_pred HHhhcC
Q 005740 660 ELLHKG 665 (680)
Q Consensus 660 eLl~~~ 665 (680)
+.+...
T Consensus 227 ~vlt~E 232 (259)
T COG4559 227 DVLTDE 232 (259)
T ss_pred HhcCHH
Confidence 988643
No 309
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=373.54 Aligned_cols=212 Identities=18% Similarity=0.347 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~ 512 (680)
-|+++||++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+. +.+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 38999999999999999999999999999999999999999999999999876544 457789
Q ss_pred EEEEccCC---cCcc-ccHHHHHhcCCCC---------C-CCHHHHHHHHHHhcHHHHHHcC--C-CCcccccCCCCCCh
Q 005740 513 IGFVGQEP---QLLQ-MDIKSNIMYGCPK---------D-VKNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSG 575 (680)
Q Consensus 513 I~~V~Qd~---~LF~-gTI~eNI~~g~~~---------~-~s~eei~~A~~~a~l~dfI~~L--P-~G~dT~vge~~LSG 575 (680)
|+||+|++ .+|. -|++||+.++... . .+.++. ...+.+.++.+ + +-.++.+ ..|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~--~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELLALKCHSVNQNI--TELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhcCCCCCCccCcc--ccCCh
Confidence 99999984 5775 5999999886210 0 011111 11223344433 2 2233333 36999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEE
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 654 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive 654 (680)
|||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||.+..+. .||+|++|++|+|++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998863 4789999999998875 599999999999999
Q ss_pred ecChHH
Q 005740 655 VGNHAE 660 (680)
Q Consensus 655 ~Gth~e 660 (680)
.|+..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 987634
No 310
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=353.62 Aligned_cols=211 Identities=33% Similarity=0.484 Sum_probs=180.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~ 512 (680)
-++++|++.+|++ .++|+|+||++.+||..|++|++|||||||+|.|.|.|+|++|+|++||.+..-.++.+ ...-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4789999999974 47999999999999999999999999999999999999999999999999998666555 5667
Q ss_pred EEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHhcHHHHHHcCC--CCcccccCCCCCChHHHHHHHHH
Q 005740 513 IGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLP--CGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~~g~~~~-----~s~eei~~A~~~a~l~dfI~~LP--~G~dT~vge~~LSGGQrQRIaIA 584 (680)
|+.|.||..|+ +-||.|||-+|+.+. .+..++.+.++.+ +.++- ...++.|+ +||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~~~~~v~--~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDIDPDTLVG--DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCChhhhhh--hCCHHHHHHHHHH
Confidence 99999999999 679999999995332 2334554444333 33221 22555555 5999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||+..+++|||||||||+|+....+.+.+.+++++. +|.++|.|||||..+.. ||||.||.||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999999984 58999999999999866 99999999999998766
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.4e-39 Score=402.07 Aligned_cols=217 Identities=24% Similarity=0.397 Sum_probs=186.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.|+.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 3579999999999999999999999999999999999999999999999999975 56778999
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
||||||++.+|. .|++|||.++.. ...+ ++++.+.++..++.+...+.+ .+||||||||++||||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA---------QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999996 599999987521 1122 234555566655544332221 3699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+.+|++||||||||+||+.+.+.+.+.|++++ +|+|+|++||.++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999983 47999999999999864 999999999999999999999875
No 312
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-40 Score=308.36 Aligned_cols=215 Identities=32% Similarity=0.490 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC---------
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 504 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~--------- 504 (680)
.++.+|+..+|.+ ..|||+|||+-++|+.+.|+|.|||||||+++++.=+-.|++|+|.++|..|+--
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999974 3699999999999999999999999999999999999999999999999887532
Q ss_pred ----CHHHhhccEEEEccCCcCc-cccHHHHHhcCCCCC---CCHHH----HHHHHHHhcHHHHHHcCCCCcccccCCCC
Q 005740 505 ----DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD---VKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDL 572 (680)
Q Consensus 505 ----~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~---~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge~~ 572 (680)
..+.+|.+.++|+|+-.|. +.|+.||+.=+ |-+ .+..| .+.-+.++|+.|--+.-| ..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~ 152 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AH 152 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------cc
Confidence 2456799999999999999 68999999644 211 23322 333455666666544443 36
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 573 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
|||||.||.||||||.-+|+++++||||||||||---++.+.++.+.+ +|||.++|||-+...++ +.+++.|.+|+
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeecce
Confidence 999999999999999999999999999999999999999999999975 48999999999999998 88999999999
Q ss_pred EEEecChHHHhhc
Q 005740 652 IIEVGNHAELLHK 664 (680)
Q Consensus 652 Ive~Gth~eLl~~ 664 (680)
|-|+|+++++..+
T Consensus 230 iEE~G~P~qvf~n 242 (256)
T COG4598 230 IEEEGPPEQVFGN 242 (256)
T ss_pred ecccCChHHHhcC
Confidence 9999999999875
No 313
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-39 Score=368.81 Aligned_cols=217 Identities=21% Similarity=0.393 Sum_probs=173.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCCCCH-HHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDI-RWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~~~~-~~LR~ 511 (680)
-|+++||+++|+++.+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532124699999999999999999999999999999999999996 89999999999875443 56788
Q ss_pred cEEEEccCC---cCcc-ccHHHHHhcCCCCC------CCHHHHHHHHHHhcHHHHHHcCCC---CcccccCCCCCChHHH
Q 005740 512 KIGFVGQEP---QLLQ-MDIKSNIMYGCPKD------VKNEDIEWAAKQAYVHEFILSLPC---GYETLVDDDLLSGGQK 578 (680)
Q Consensus 512 ~I~~V~Qd~---~LF~-gTI~eNI~~g~~~~------~s~eei~~A~~~a~l~dfI~~LP~---G~dT~vge~~LSGGQr 578 (680)
+|+||+|++ .+|. .|++||+.++.... ...++ ....+.++++.+.- -.+..+ ..||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~--~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRLKVKTASPFLPI--GRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhcCccCCCccCcc--ccCCHHHH
Confidence 999999996 3664 69999998862110 11111 11122333443311 112222 36999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|+|+..++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999998864 47899999999998865 99999999999998876
Q ss_pred hHH
Q 005740 658 HAE 660 (680)
Q Consensus 658 h~e 660 (680)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 443
No 314
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.8e-39 Score=400.58 Aligned_cols=212 Identities=24% Similarity=0.432 Sum_probs=180.0
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC---CCCceEEECCeeCCCCCHHHh
Q 005740 434 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~---p~~G~I~idG~di~~~~~~~L 509 (680)
.++++||+++|+.++ ++++|+|||++|+|||.+||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 3569999999999999999999999999999999999998 78999999999985 357
Q ss_pred hccEEEEccCCc-CccccHHHHHhcCC----CCCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHH
Q 005740 510 REKIGFVGQEPQ-LLQMDIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 578 (680)
Q Consensus 510 R~~I~~V~Qd~~-LF~gTI~eNI~~g~----~~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQr 578 (680)
|+.+|||+|++. ++..|++||+.++. +.+.++++ +.++++..++ .+-.|+.+|+ .+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 899999999865 56789999999852 11234433 4445555544 3447899986 38999999
Q ss_pred HHHHHHHHHccCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH--hhcCEEEEEeCC-EEEE
Q 005740 579 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE 654 (680)
Q Consensus 579 QRIaIARAll~~p~-ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti--~~aD~I~vl~~G-~Ive 654 (680)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++.+ +|+|+|+++|+++.. +.||+|++|++| ++++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999997 9999999999999999999999999863 479999999999973 679999999997 9999
Q ss_pred ecChH
Q 005740 655 VGNHA 659 (680)
Q Consensus 655 ~Gth~ 659 (680)
.|+.+
T Consensus 985 ~G~~~ 989 (1394)
T TIGR00956 985 FGDLG 989 (1394)
T ss_pred ECCcc
Confidence 99864
No 315
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=325.40 Aligned_cols=417 Identities=18% Similarity=0.213 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 217 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-LSIIVSVYGQYQKRASVLTQECNAHAN 295 (680)
Q Consensus 217 srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (680)
.|+++|++..-..+......++.+++.++.-..-++....+++.+.+....+ -.++.+.+.+-.-+...++++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 6899999887766655555544444433333333333333444444433322 233334443333333444455555555
Q ss_pred HHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCC
Q 005740 296 NVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI----MIGQVS 371 (680)
Q Consensus 296 ~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv----~~g~is 371 (680)
-.-.+...|.+.|--|+.++.|...-.+..+...+...+.-.+.-....+.+++-..+.++..++-+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 5566777899999999999988877766666665554433222111222222222222222111111111 234677
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------c-c-------ccccc
Q 005740 372 PEQLTKYVLYCE----WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN-------------Q-F-------LSEGV 426 (680)
Q Consensus 372 ~G~l~af~~~~~----~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~-------------~-~-------~~~~~ 426 (680)
..++...+.... .++.....+.....++.+-.+-..||-|+++.-.+. . + .++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 777765443222 222333333333334444455567887765421100 0 0 00001
Q ss_pred ccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH
Q 005740 427 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 506 (680)
Q Consensus 427 ~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~ 506 (680)
+....+..|+|++|+++=|++ +.-+.+|+||+|+.|+.+-|.||||||||+|++.|.|+++-.+|++.-=...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 111223579999999999974 344677799999999999999999999999999999999999999976332111
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCC------CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC---CCCChHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQ 577 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~------~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge---~~LSGGQ 577 (680)
+.+=||||.|+.=.||+||-+.|-. ...++||+|.+.++.+++.+.+++ .+|+|+.+.- ..||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 4588999999999999999999852 134789999999999999886655 6899998864 4899999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
+||+|.||-++.+|++-||||+|||+|.+.|..+.+-+++. |-|.|-|.||-|.-+.=|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999998888775 7899999999999999999999986
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=365.43 Aligned_cols=211 Identities=25% Similarity=0.461 Sum_probs=171.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~ 512 (680)
-|+++||++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999973 37999999999999999999999999999999999999999999999999987765 346788
Q ss_pred EEEEccCC---cCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHhcHHHHHHcCCCCcc-cccCC--CCCChHHH
Q 005740 513 IGFVGQEP---QLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQK 578 (680)
Q Consensus 513 I~~V~Qd~---~LF-~gTI~eNI~~g~~~~-------~s~eei~~A~~~a~l~dfI~~LP~G~d-T~vge--~~LSGGQr 578 (680)
||||+|++ .+| ..|++||+.++.... .+.++. ...+.+++..+ |++ -.... ..||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 354 579999998752100 111111 11233444443 232 11222 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||++..+.. ||+|++|++|+|++.|+
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999863 47899999999998765 99999999999999998
Q ss_pred hHHHh
Q 005740 658 HAELL 662 (680)
Q Consensus 658 h~eLl 662 (680)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 77653
No 317
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5e-39 Score=344.06 Aligned_cols=184 Identities=32% Similarity=0.508 Sum_probs=158.2
Q ss_pred EeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----H
Q 005740 468 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----N 541 (680)
Q Consensus 468 IVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~ 541 (680)
|+||||||||||+++|+|+++|++|+|++||.++.+.+. .+++|+||+|++.+|. .|++||+.|+.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 4678999999999996 599999998731 1122 2
Q ss_pred HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhcc
Q 005740 542 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 621 (680)
Q Consensus 542 eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~ 621 (680)
+++.++++..++.++..+.| .+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.++
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 34566777777665554443 369999999999999999999999999999999999999999999988642
Q ss_pred CCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 622 CKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 622 ~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
.|+|+|+|||++..+.. ||+|++|++|+|++.|+++|+.++
T Consensus 150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 37899999999998764 999999999999999999999875
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=362.95 Aligned_cols=204 Identities=22% Similarity=0.366 Sum_probs=173.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +.|
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999982 579
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 514 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 514 ~~V~Qd~~--LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
|||+|++. ++ ..|++||+.+.......++++.++++..++. +...+.| ..||||||||++||||++.
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 44 3699999975311223455677777777662 3322221 3699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE-EecChHHHhhcCc
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKGR 666 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl~~~g 666 (680)
+|+||||||||++||+.+.+.+.+.|+++ +.|+|+|||.+..+.. ||+|++|++|+++ ..|+++++++.+|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99999999999999999999999999875 2599999999999875 9999999999998 8899999887654
No 319
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=364.64 Aligned_cols=212 Identities=25% Similarity=0.396 Sum_probs=172.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-HHHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-~~~LR~~ 512 (680)
.++++||++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++...+ .+.+|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 4899999999999999999999999999999999999999999999999987553 3456789
Q ss_pred EEEEccCCc---Cc-cccHHHHHhcCCCCCC-------CHHHHHHHHHHhcHHHHHHcCC---CCcccccCCCCCChHHH
Q 005740 513 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVHEFILSLP---CGYETLVDDDLLSGGQK 578 (680)
Q Consensus 513 I~~V~Qd~~---LF-~gTI~eNI~~g~~~~~-------s~eei~~A~~~a~l~dfI~~LP---~G~dT~vge~~LSGGQr 578 (680)
|+|++|++. +| ..|+.||+.++..... ...+. ...+.+++..+. +-.++.+ ..||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~--~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSLNIKTPSREQLI--MNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhcCcccCCccCcc--ccCCHHHH
Confidence 999999973 55 5899999987631110 11111 112234444431 1123332 27999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++.+|++|||||||++||..+.+.+.+.|+++.+ .|.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999864 3789999999999885 499999999999999999
Q ss_pred hHHHh
Q 005740 658 HAELL 662 (680)
Q Consensus 658 h~eLl 662 (680)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88755
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=362.77 Aligned_cols=208 Identities=25% Similarity=0.461 Sum_probs=166.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +.|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 36999999999999999999999999999999999999999999999982 4699
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC---------------CCCCHHH---HHHH----------HHHhcHHHHHHcCCCCcc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP---------------KDVKNED---IEWA----------AKQAYVHEFILSLPCGYE 565 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~---------------~~~s~ee---i~~A----------~~~a~l~dfI~~LP~G~d 565 (680)
||+|++.+|. .|++||+.++.. ++.+.++ +.+. -....+++.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998885 599999987621 0000000 0000 0012233444443 333
Q ss_pred cccC-C--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-c
Q 005740 566 TLVD-D--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 641 (680)
Q Consensus 566 T~vg-e--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-a 641 (680)
.... . .+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|.+ .++|+|+|+|+++.+.. |
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVC 219 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhc
Confidence 2111 1 37999999999999999999999999999999999999999988864 26899999999998865 9
Q ss_pred CEEEEEeCCEEE-EecChHHHhhc
Q 005740 642 DRIVVIDDGRII-EVGNHAELLHK 664 (680)
Q Consensus 642 D~I~vl~~G~Iv-e~Gth~eLl~~ 664 (680)
|+|++|++|+++ +.|++++.++.
T Consensus 220 d~i~~l~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 220 THMADLDYGELRVYPGNYDEYMTA 243 (530)
T ss_pred ceEEEEeCCEEEEecCCHHHHHHH
Confidence 999999999994 79999988753
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.3e-39 Score=333.78 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=160.8
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCeeCCCCCH
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 506 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-----------idG~di~~~~~ 506 (680)
.||+|+|+. ..++|+|+|+ +++||++||+||||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478999963 2369999994 999999999999999999999999999999999996 89999887654
Q ss_pred HHhhc--cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 507 RWLRE--KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 507 ~~LR~--~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
+..|. .+++++|++.++..++.+|+.......-.++++.++++..++.+...+.+ ..||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI---------DQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 43433 47888888777765555555433111112345666666665544332211 37999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
||++++|+++|||||||+||+++.+.+.+.|+++.+ +++|+|+|+|+++.+.. ||+|++| +|+|.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 999999999999999999999999999999998864 36899999999999885 9999999 46676543
No 322
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-38 Score=394.89 Aligned_cols=220 Identities=18% Similarity=0.368 Sum_probs=188.8
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
.-|+++||+++|+++ ++++|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|.++.+ +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 358999999999742 2579999999999999999999999999999999999999999999999999975 45678899
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
|||+||++.++. -|++||+.+... ...++ +.+.++++..++.++..+.+ +.||||||||++||||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999885 699999976311 12222 23455667777766544433 3689999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcC
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
|+.+|+||+||||||+||+.+.+.+.+.|+++.+ +|+|+|++||.++.++. ||||++|++|+++..|+.++|.++-
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999999999863 47999999999999875 9999999999999999999997764
Q ss_pred c
Q 005740 666 R 666 (680)
Q Consensus 666 g 666 (680)
|
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 3
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-38 Score=362.99 Aligned_cols=208 Identities=27% Similarity=0.427 Sum_probs=167.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCC---------------CCC----------HHHHHHHHHHhc-------HHHHHHcC
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPK---------------DVK----------NEDIEWAAKQAY-------VHEFILSL 560 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~---------------~~s----------~eei~~A~~~a~-------l~dfI~~L 560 (680)
|||+|++.+|.. |++||+.++... ... ..++.++++.++ +.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999864 999999876210 000 011222222221 22233322
Q ss_pred CCCc---ccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 561 PCGY---ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 561 P~G~---dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
|+ +..+ ..||||||||++||||++.+|++||||||||+||+++...+.+.|+++ +.|+|+|||+++.
T Consensus 153 --gl~~~~~~~--~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~ 222 (556)
T PRK11819 153 --RCPPWDAKV--TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYF 222 (556)
T ss_pred --CCCcccCch--hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHH
Confidence 22 2222 379999999999999999999999999999999999999999988875 2599999999999
Q ss_pred Hhh-cCEEEEEeCCEEE-EecChHHHhhc
Q 005740 638 IKA-VDRIVVIDDGRII-EVGNHAELLHK 664 (680)
Q Consensus 638 i~~-aD~I~vl~~G~Iv-e~Gth~eLl~~ 664 (680)
+.. ||+|++|++|+++ ..|++++..+.
T Consensus 223 ~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 223 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred HHhhcCeEEEEeCCEEEEecCCHHHHHHH
Confidence 876 9999999999987 78999987653
No 324
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=310.64 Aligned_cols=223 Identities=26% Similarity=0.499 Sum_probs=186.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 511 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~ 511 (680)
+.+..+|+..+|.. ++|.+++||++++||.|++.||+|+||||.+.++.|+..|++|+|.+||.||..++...- |-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 45788999999975 479999999999999999999999999999999999999999999999999999998774 56
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
-|||+|||+.+|. -|++|||..-- +..+.+...+-++..+++.++.+ .+...-.. ..||||||.|+-|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vl--E~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVL--EIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHH--hhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHh
Confidence 6999999999995 59999998652 23332333333333333333332 11111111 389999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc-chHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl-sti~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
.||+.++||||.+++||.+-..|++.+..++. +|--+++.-|.. +|+.-|||.+++.+|+|..+|+++|+.++.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999999974 477888889997 778889999999999999999999999764
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.7e-38 Score=361.88 Aligned_cols=208 Identities=27% Similarity=0.423 Sum_probs=171.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999985 2479
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC----------------CC-C--------HHHHHHHHHHhcHHH-------HHHcC
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPK----------------DV-K--------NEDIEWAAKQAYVHE-------FILSL 560 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~----------------~~-s--------~eei~~A~~~a~l~d-------fI~~L 560 (680)
|||+|++.+|. .|++|||.++... .. . .+++.++++.++.++ .+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999985 5999999876210 00 1 123555555555432 33332
Q ss_pred CCCc---ccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 561 PCGY---ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 561 P~G~---dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
|+ +..+ .+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. ++|+|+|||+++.
T Consensus 151 --~l~~~~~~~--~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~ 220 (552)
T TIGR03719 151 --RCPPWDADV--TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYF 220 (552)
T ss_pred --CCCcccCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHH
Confidence 22 2222 379999999999999999999999999999999999999999988775 2599999999999
Q ss_pred Hhh-cCEEEEEeCCEEE-EecChHHHhhc
Q 005740 638 IKA-VDRIVVIDDGRII-EVGNHAELLHK 664 (680)
Q Consensus 638 i~~-aD~I~vl~~G~Iv-e~Gth~eLl~~ 664 (680)
+.. ||+|++|++|+++ ..|++++.++.
T Consensus 221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 221 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred HHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 876 8999999999976 67999986653
No 326
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-39 Score=295.65 Aligned_cols=214 Identities=29% Similarity=0.500 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe--eCCCCC----HH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLD----IR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~--di~~~~----~~ 507 (680)
.|+++|++|.|.. ..+|.||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|-|. |.++.. ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5899999999975 36999999999999999999999999999999999999999999999885 444333 45
Q ss_pred HhhccEEEEccCCcCc-cccHHHHHhcCCC---CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 508 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~---~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
.||+.+|+|+|+-+|. +-|+-||+.=+ | ...+++ +..+.++.-.+.+|-++.|- .|||||.|
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---------hlsggqqq 148 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---------HLSGGQQQ 148 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCce---------ecccchhh
Confidence 7999999999999999 78999999644 2 123333 34556677777788777774 58999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecCh
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth 658 (680)
|+||||||+-+|++|++||||+|||+|-..+|.+.|+++.+ .|-|-++|||.....+. |.+++.||+|+|+|.|++
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 99999999999999999999999999999999999999974 48999999999999876 999999999999999998
Q ss_pred HHHhh
Q 005740 659 AELLH 663 (680)
Q Consensus 659 ~eLl~ 663 (680)
+-.-+
T Consensus 226 ~~ft~ 230 (242)
T COG4161 226 SCFTE 230 (242)
T ss_pred hhccC
Confidence 86654
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.5e-38 Score=320.69 Aligned_cols=193 Identities=20% Similarity=0.250 Sum_probs=157.2
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEE-ECCeeCCCCCHHHhhccEEEEccCCcCccc-cHHH
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKS 529 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-idG~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI~e 529 (680)
||+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.+ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 887543 13467888865 9999
Q ss_pred HHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 530 NIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 530 NI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
||.+... .+.+.+++.+.+. + ...+++.+++.++ .||||||||++||||++++|+++||||||+++|+.+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~--~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS--EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh--hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 9987521 1234444433221 1 2344555555554 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhcCcHHH
Q 005740 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 669 (680)
Q Consensus 609 ~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~ 669 (680)
+.+.+.+.+.. +++|+|+|||+++.+. .||+|++|++|+|++.|+-+++.+..+.|.
T Consensus 141 ~~~~~~l~~~~----~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 198 (213)
T PRK15177 141 LRMQAALACQL----QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQ 198 (213)
T ss_pred HHHHHHHHHHh----hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHHH
Confidence 99999886543 3479999999999986 599999999999999999999876555554
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-38 Score=325.06 Aligned_cols=196 Identities=26% Similarity=0.391 Sum_probs=160.8
Q ss_pred EEcCCCCCCCcccceeEEee-----CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEE
Q 005740 442 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516 (680)
Q Consensus 442 F~Y~~~~~~~VL~~isl~I~-----~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V 516 (680)
|+||+. .+.++|++|+++ +||++||+||||||||||+++|+|+++|++|+|.+||. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 688853 468999999997 68999999999999999999999999999999999984 69999
Q ss_pred ccCCc-CccccHHHHHhcCCCCCC--CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCe
Q 005740 517 GQEPQ-LLQMDIKSNIMYGCPKDV--KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 517 ~Qd~~-LF~gTI~eNI~~g~~~~~--s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~I 593 (680)
+|++. .|+.|++||+.+... .. ..+...++++..++.+...+ .+ ..||||||||++|||||+++|++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~-------~~--~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITK-DFYTHPYFKTEIAKPLQIEQILDR-------EV--PELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred cccccCCCCCCHHHHHHHHhh-hccccHHHHHHHHHHcCCHHHhhC-------Ch--hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99987 568999999976521 11 12334555555555443322 21 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE--EecChHHHhh
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELLH 663 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv--e~Gth~eLl~ 663 (680)
+||||||++||+++...+.+.|+++.++ .++|+|+|||++..+.. ||+|++|+++..+ ..++++++.+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 9999999999999999999999988542 36899999999999885 9999999876544 5677777653
No 329
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=318.00 Aligned_cols=200 Identities=29% Similarity=0.509 Sum_probs=182.0
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----CCHHHhhccEEEEccCCcCc-cccHH
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVGQEPQLL-QMDIK 528 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~----~~~~~LR~~I~~V~Qd~~LF-~gTI~ 528 (680)
=++||+.+.-..+||-|+||||||||+|++.|+..|++|+|.+||.-+.+ +.+.--+++||||+||.-|| +-||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 37889998889999999999999999999999999999999999986643 55666788999999999999 78999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
-|++||. ...+.++..+++..-|+.....+.|. +||||||||+||+|||+.+|++|+||||.|+||-...
T Consensus 95 gNL~YG~-~~~~~~~fd~iv~lLGI~hLL~R~P~---------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 95 GNLRYGM-WKSMRAQFDQLVALLGIEHLLDRYPG---------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred cchhhhh-cccchHhHHHHHHHhCcHHHHhhCCC---------ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999994 46678899999999999999999985 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 609 ~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
++|+--|++++++ -+--++.|||.+..+. -||+|+||++||+...|.-+|.++..
T Consensus 165 ~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999999999875 2567999999998865 59999999999999999999998654
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.4e-38 Score=297.97 Aligned_cols=143 Identities=35% Similarity=0.602 Sum_probs=134.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|++||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
|++| |||||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999876 3799999999999865 89999999986
No 331
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-38 Score=300.62 Aligned_cols=206 Identities=30% Similarity=0.477 Sum_probs=169.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
+..+++|-+|++.+ .++|+|+|++|++||.++++||||||||||+|++.||.+|+.|+|.+||.+|..-.-+ =|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 56789999998754 5699999999999999999999999999999999999999999999999999765432 48
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 515 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 515 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
+|+|++-|+. -|+.||+.||.. ..++.++ ..+-+..+++.|+=.+.+ -.||||||||+.|||||.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARALa 148 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARALA 148 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHHhh
Confidence 9999999996 699999999842 1222222 223334444433311110 279999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEe--CCEEEEecC
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID--DGRIIEVGN 657 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~--~G~Ive~Gt 657 (680)
.+|+.|+||||.+|||+-|.+.+|+.|-.+.++ .||-+++|||.+... --|++++||+ .|||++.=+
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~--tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQE--TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999999999999999999999999999887664 589999999999764 5699999998 689998644
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.7e-38 Score=355.34 Aligned_cols=209 Identities=22% Similarity=0.320 Sum_probs=167.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCC-CCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~-~~~~~LR~ 511 (680)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|++||.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999964 3599999999999999999999999999999999998876 69999999987632 23445788
Q ss_pred cEEEEccCCcCcc---ccHHHHHhcCCC------CCCC---HHHHHHHHHHhcHHH-HHHcCCCCcccccCCCCCChHHH
Q 005740 512 KIGFVGQEPQLLQ---MDIKSNIMYGCP------KDVK---NEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 512 ~I~~V~Qd~~LF~---gTI~eNI~~g~~------~~~s---~eei~~A~~~a~l~d-fI~~LP~G~dT~vge~~LSGGQr 578 (680)
+|+||+|++.++. .|++||+.++.. .... ++++.++++..++.+ .. +..+ ..||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~--~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DAPF--HSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cCch--hhCCHHHH
Confidence 9999999987642 477777754310 0111 234455555555433 22 1111 36999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEeCCEEEEec
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~~G~Ive~G 656 (680)
||++||||++++|++|||||||++||+++.+.+.+.|+++.++ .+.|+|+|||+++.+.. ||+|++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999998642 23479999999999974 8999999999998753
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.8e-38 Score=356.58 Aligned_cols=212 Identities=20% Similarity=0.340 Sum_probs=171.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~ 512 (680)
-|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 2699999999999999999999999999999999999999999999999998777654 4678
Q ss_pred EEEEccCC---cCcc-ccHHHHHhcCC---CCC-CCHHHHHHHHHHhcHHHHHHcC--C-CCcccccCCCCCChHHHHHH
Q 005740 513 IGFVGQEP---QLLQ-MDIKSNIMYGC---PKD-VKNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 513 I~~V~Qd~---~LF~-gTI~eNI~~g~---~~~-~s~eei~~A~~~a~l~dfI~~L--P-~G~dT~vge~~LSGGQrQRI 581 (680)
|+||||++ .+|. .|+.||+.... ... ...++. ...+.+++..+ + +..++.+ ..||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~--~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRALNIKFNHAEQAA--RTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHcCCCCCCccCcc--ccCCcHHHHHH
Confidence 99999986 3664 59999986320 000 011111 11233444443 1 2233333 36999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~e 660 (680)
+||||++.+|+||||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||.+..+.. ||+|++|++|+|+..|+.++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999999864 37899999999999875 99999999999999998887
Q ss_pred Hhh
Q 005740 661 LLH 663 (680)
Q Consensus 661 Ll~ 663 (680)
+..
T Consensus 490 ~~~ 492 (510)
T PRK15439 490 INV 492 (510)
T ss_pred CCH
Confidence 653
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=350.10 Aligned_cols=212 Identities=24% Similarity=0.409 Sum_probs=169.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH-Hhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~-~LR~~ 512 (680)
-|+++||+++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999975 2499999999999999999999999999999999999999999999999999877654 45788
Q ss_pred EEEEccCCc---Ccc-ccHHHH-----HhcCCCC-C-CCHHHHHHHHHHhcHHHHHHcCCC---CcccccCCCCCChHHH
Q 005740 513 IGFVGQEPQ---LLQ-MDIKSN-----IMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPC---GYETLVDDDLLSGGQK 578 (680)
Q Consensus 513 I~~V~Qd~~---LF~-gTI~eN-----I~~g~~~-~-~s~eei~~A~~~a~l~dfI~~LP~---G~dT~vge~~LSGGQr 578 (680)
++|++|++. +|. .|+.+| +.+.... . .+.++..+ .+.+++..+.- -.++.+ ..||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~--~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTPGHRTQI--GSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCCCccccc--ccCCcHHH
Confidence 999999963 564 577766 4322110 1 12222211 22334444311 123232 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gt 657 (680)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ .|+|+|+|||.++.+. .||++++|++|+++..++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999998863 4789999999999886 499999999999998887
Q ss_pred hHH
Q 005740 658 HAE 660 (680)
Q Consensus 658 h~e 660 (680)
.++
T Consensus 475 ~~~ 477 (491)
T PRK10982 475 TKT 477 (491)
T ss_pred ccc
Confidence 643
No 335
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=329.93 Aligned_cols=210 Identities=29% Similarity=0.486 Sum_probs=175.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-HHHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-~~~LR~~ 512 (680)
.++++|++.+||+ ..+++||||+|++||+-||.|++|+|||||++.|.|+|+|++|+|++||++++=-+ .+..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999984 46899999999999999999999999999999999999999999999999997544 4568888
Q ss_pred EEEEccCCcCc-cccHHHHHhcCCCCCC----CHHHHHHHHHHhcHHHHHH--cCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 513 IGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~----s~eei~~A~~~a~l~dfI~--~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
||+|.|+..|+ +-|+.|||.+|..+.. +..+..+ .+.+..+ .||--.|..|+ .||-|||||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~yGl~vdp~~~V~--dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERYGLPVDPDAKVA--DLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHhCCCCCccceee--cCCcchhHHHHHHH
Confidence 99999999999 5699999999953211 2222211 1222222 23333333343 59999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
||+++|+|||||||||-|-|..-+.+.+.++++.+ .|+|+|+|||||..++. |||+-||.+||++..-
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 99999999999999999999999999999999975 59999999999999887 9999999999987543
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=291.70 Aligned_cols=156 Identities=44% Similarity=0.733 Sum_probs=146.6
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+++|++|+|++ .++|+++||+|++|+.++|+|+||||||||+++|.|+++|++|+|++||.++.+.....++++++|
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 37899999974 369999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEE
Q 005740 516 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 595 (680)
Q Consensus 516 V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILI 595 (680)
++| |||||+||++||||++.+|+++|
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 596 LDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
|||||++||.++...+.+.+.++.+ +++|+++|+|+++.+.. ||+|++|++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999998753 25899999999999998 59999999985
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.8e-36 Score=374.53 Aligned_cols=214 Identities=24% Similarity=0.418 Sum_probs=179.5
Q ss_pred ccEEEEEEEEEcCCC----------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC--CCceEEECCee
Q 005740 433 GHVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFP 500 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~----------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~d 500 (680)
..+.|+||++.++.. ....+|+|||++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999998531 123699999999999999999999999999999999999874 78999999988
Q ss_pred CCCCCHHHhhccEEEEccCCcCcc-ccHHHHHhcCC----CCCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCC-
Q 005740 501 LTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD- 570 (680)
Q Consensus 501 i~~~~~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~----~~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge- 570 (680)
.+ ...+|+.+|||+|++.++. .|++|||.|+. +++.++++ +.+.++..++.+ -.|+.+|.
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 64 3567888999999987774 69999998752 12334333 455666665543 34788874
Q ss_pred --CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch--HhhcCEEEE
Q 005740 571 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVV 646 (680)
Q Consensus 571 --~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst--i~~aD~I~v 646 (680)
+.||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++.+ +|+|+|+++|.++. ...||++++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 48999999999999999999999999999999999999999999999864 47999999999984 577999999
Q ss_pred EeC-CEEEEecChH
Q 005740 647 IDD-GRIIEVGNHA 659 (680)
Q Consensus 647 l~~-G~Ive~Gth~ 659 (680)
|++ |+++..|+..
T Consensus 1093 L~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1093 MKRGGQVIYSGPLG 1106 (1470)
T ss_pred EcCCCEEEEECCcc
Confidence 996 8999999853
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3e-36 Score=345.18 Aligned_cols=203 Identities=22% Similarity=0.342 Sum_probs=165.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3699999999999999999999999999999999999999999999965 21 59
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCC-CC--CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 514 GFVGQEP-QLL-QMDIKSNIMYGCPK-DV--KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 514 ~~V~Qd~-~LF-~gTI~eNI~~g~~~-~~--s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
|||+|++ .++ +.|++||+.++... .. .+++..++++..++.+. ..+..+ ..||||||||++||||++
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV--GVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch--hhCCHHHHHHHHHHHHHh
Confidence 9999997 565 46999999886310 11 12333344444433210 112222 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC-CEEEE-ecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRIIE-VGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~-G~Ive-~Gth~eLl~~ 664 (680)
.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||.+..+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-----P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999876 2 399999999998765 999999996 88874 7999887764
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.9e-36 Score=295.58 Aligned_cols=157 Identities=29% Similarity=0.382 Sum_probs=137.8
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEc
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 517 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~ 517 (680)
.||+++|++ .++++|+ |++++||++||+||||||||||+++|+|+++|++|+|.+||.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 689999963 4689984 9999999999999999999999999999999999999999963 88999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 518 Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
|++. ||||||||++||||++.+|++++||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8653 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEe--cChHHHhh
Q 005740 598 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELLH 663 (680)
Q Consensus 598 EaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~--Gth~eLl~ 663 (680)
|||++||+++.+.+.+.++++.++ .++|+|+|||++..++. ||+|++|+++-.+.+ |.+..-.+
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 999999999999999999987532 24899999999999884 999999998866533 55543333
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.3e-36 Score=349.01 Aligned_cols=199 Identities=27% Similarity=0.432 Sum_probs=165.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+|+|+++ +++|+|+||+|++|+++||+||||||||||+++|+|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999642 3699999999999999999999999999999999999999999999976 3479
Q ss_pred EEEccCCcCccccHHHHHhc--C-CCCCCCHHHHHHHHHHhcHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 514 GFVGQEPQLLQMDIKSNIMY--G-CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~--g-~~~~~s~eei~~A~~~a~l~d-fI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
||++|++. ...++.+|..+ . ..+..+++++.++++..++.+ .....| ..||||||||++||||++.
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~---------~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM---------YTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCc---------cccCHHHHHHHHHHHHHhc
Confidence 99999873 33455566432 1 012456778888888888753 222211 3699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE-EecChHHH
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL 661 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv-e~Gth~eL 661 (680)
+|++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+|+ ..|++++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-----Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999998888764 2 499999999999875 9999999999998 67888764
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8e-36 Score=341.54 Aligned_cols=203 Identities=21% Similarity=0.326 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3699999999999999999999999999999999999999999999965 21 69
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCC--HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 514 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 514 ~~V~Qd~~-LF-~gTI~eNI~~g~~~-~~s--~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
|||+|++. ++ +.|++||+.++... ... +++..++++..++.+. -.+..+ ..||||||||++||||++
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS------DQQKKV--GQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh------HhcCch--hhCCHHHHHHHHHHHHHh
Confidence 99999973 55 46999999987321 111 2223333333333110 012222 369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC-CEEE-EecChHHHhhc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK 664 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~-G~Iv-e~Gth~eLl~~ 664 (680)
.+|++|||||||++||+.+.+.+.+.|+++ + .|+|+|||.+..+.. ||+|++|++ |+++ ..|++++..+.
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEF-----A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999999999999999999999886 2 499999999998875 999999997 6877 46888776543
No 342
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-37 Score=291.29 Aligned_cols=217 Identities=27% Similarity=0.463 Sum_probs=190.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+.+|.+ +.||+++|++|++|+.++|+||+|+|||||+.++.|+..+++|+|++||.++.+++.++|-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999964 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC----CC--HH-HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 515 FVGQEPQLL-QMDIKSNIMYGCPKD----VK--NE-DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 515 ~V~Qd~~LF-~gTI~eNI~~g~~~~----~s--~e-ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
+.-|+.++= .-||||=+.||+-|- .+ |+ -|.+|++.-++.+.=. .|= ..||||||||--||-.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d----ryL-----d~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD----RYL-----DELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH----HhH-----Hhcccchhhhhhhhee
Confidence 999999976 569999999996321 22 22 3566766665544211 110 2699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcC
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+..+.+-++||||..+||..-...+++.|+++.+++ |||+++|-|....... +|.|+-|+||+++.+|+++|+++..
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el--~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh--CCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 999999999999999999999999999999998763 7999999999998765 9999999999999999999999753
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-35 Score=345.56 Aligned_cols=201 Identities=23% Similarity=0.416 Sum_probs=163.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 36999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEccCC-cCcc-ccHHHHHhcCCCCCC--C--HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEP-QLLQ-MDIKSNIMYGCPKDV--K--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~-~LF~-gTI~eNI~~g~~~~~--s--~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
||++|++ .++. .|+.||+.++.. .. + ++++.+.++..++.+ +..++.+ ..||||||||++||||+
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~--~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHP------KRAMTPV--KALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCH------HHHhChh--hhCCHHHHHHHHHHHHH
Confidence 9999986 3654 599999988632 22 1 233344444333311 1123333 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe-CCEEEE-ecChHHHhh
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIE-VGNHAELLH 663 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~-~G~Ive-~Gth~eLl~ 663 (680)
+.+|++|||||||++||..+...+.+.|++. +.|+|+|||+...+.. ||+|++|+ +|+|++ .|++++-++
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999988775 3599999999998865 99999998 899987 688888654
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.5e-36 Score=341.82 Aligned_cols=194 Identities=25% Similarity=0.331 Sum_probs=164.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCCC-HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYGCPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g~~~~~s-~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
+|+||++.+ ++.|++||+.++. .... ++.+.++++..++.+...+.| ..||||||||++|||||+++|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCC
Confidence 999999875 4789999999862 2222 334566777777665443322 269999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
++|||||||++||.++...+.+.|+++.++ .++|+|+|||.+..+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999998542 37899999999998765 999999965 8887776
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=345.05 Aligned_cols=199 Identities=21% Similarity=0.334 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5899999999964 36999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 514 GFVGQEP--QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 514 ~~V~Qd~--~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
||++|++ .++ ..|+.+|+.-. .+...++++.+.++..++. +.. +..+ ..||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~-------~~~~--~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKV-------TEET--RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHh-------cCch--hhCCHHHHHHHHHHHHHhc
Confidence 9999985 344 34888887522 1233455666666666552 122 2222 3699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE-EecChHHHh
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL 662 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl 662 (680)
+|++|||||||++||..+...+.+.|.++ + .|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999876 2 499999999999865 9999999999998 789998874
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-36 Score=369.95 Aligned_cols=208 Identities=22% Similarity=0.304 Sum_probs=171.2
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC----CCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc-
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ- 524 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y----~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~- 524 (680)
+++|+|+|+++++||.+||+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|+..+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45999999999999999999999999999999999986 579999999999987654 456788999999988885
Q ss_pred ccHHHHHhcCCC---C-----CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHHccCCCe
Q 005740 525 MDIKSNIMYGCP---K-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 525 gTI~eNI~~g~~---~-----~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge---~~LSGGQrQRIaIARAll~~p~I 593 (680)
-|++||+.|+.. + +.+++|..+.....-++.+ .|.+-.||.||+ +.||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY--GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc--CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 699999988521 1 2233332211101001111 455567999997 48999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc-hH-hhcCEEEEEeCCEEEEecChHHHh
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls-ti-~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|+||||||+||+.+...+.+.|+++.+. .|+|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~--~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANI--LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999998642 3799999999974 44 569999999999999999999884
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.7e-35 Score=287.28 Aligned_cols=160 Identities=31% Similarity=0.515 Sum_probs=130.8
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
.+++|+|+||++++|+++||+||||||||||+++++ +++|+|.++|.. ... .|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 357999999999999999999999999999999995 379999998862 222 2456888887
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC--CCeEEEeCCCCCCC
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD--PAILLLDEATSALD 604 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~--p~ILILDEaTSaLD 604 (680)
. +++..++.+..+ ... ..||||||||++||||++++ |+++||||||++||
T Consensus 68 ----------------~---------~~l~~~~L~~~~-~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------L---------QFLIDVGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------H---------HHHHHcCCCccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 1 233333322211 222 48999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC------CEEEEec
Q 005740 605 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD------GRIIEVG 656 (680)
Q Consensus 605 ~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~------G~Ive~G 656 (680)
+++.+.+.+.|+++.+ .|+|+|+|||+++.++.||+|++|++ |++||.|
T Consensus 122 ~~~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 122 QQDINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 9999999999998753 47999999999999999999999965 5556554
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-35 Score=276.35 Aligned_cols=216 Identities=27% Similarity=0.461 Sum_probs=180.5
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc-Cc-----
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL----- 523 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~-LF----- 523 (680)
..+.+.|||++++|+++||+|.+|||||||+|.|.|..+|++|+|++||.++.-=|...-.++|-+++|||. =|
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 458999999999999999999999999999999999999999999999999987777777789999999985 22
Q ss_pred -----cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeC
Q 005740 524 -----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 598 (680)
Q Consensus 524 -----~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDE 598 (680)
++.++-|=.+- +.+..++|.+.++.+|+ +|+ ++..--..||-|||||+|+||||+-+|+|+|-||
T Consensus 106 iGqiLd~PL~l~T~~~--~~~R~~~i~~TL~~VGL------~Pd--han~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 106 IGQILDFPLRLNTDLE--PEQRRKQIFETLRMVGL------LPD--HANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhHhcchhhhcccCC--hHHHHHHHHHHHHHhcc------Ccc--ccccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 22222222222 23445678889998887 454 2222335799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc--CcHHHHHHHHh
Q 005740 599 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK--GRLYAKLVKRQ 675 (680)
Q Consensus 599 aTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~--~g~Y~~L~~~q 675 (680)
|-.+||.....++.+.+.++.+. -|-.-|.|+..+-.+++ +|+|+||++|+++|.|+..++++. ...-++|++..
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek--~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHH--hCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHH
Confidence 99999999999999988887653 58899999999999998 999999999999999999999974 56677777765
Q ss_pred hh
Q 005740 676 TE 677 (680)
Q Consensus 676 ~~ 677 (680)
..
T Consensus 254 Fg 255 (267)
T COG4167 254 FG 255 (267)
T ss_pred hc
Confidence 43
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=335.95 Aligned_cols=208 Identities=24% Similarity=0.402 Sum_probs=159.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .|+
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 469999999999999999999999999999999999999999999999842 489
Q ss_pred EEccCCcCccccHHHHHhcCCC--CCCCH-----------HHHHHHH---H-------HhcHHHHHHcCCCCccc-ccCC
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCP--KDVKN-----------EDIEWAA---K-------QAYVHEFILSLPCGYET-LVDD 570 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~--~~~s~-----------eei~~A~---~-------~a~l~dfI~~LP~G~dT-~vge 570 (680)
|++|++..+..|+.+++.-+.. ...+. ..+.... . ...+.+.+..+ |+.. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 9999776666677666542200 00000 0000000 0 01122333333 3321 1111
Q ss_pred --CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEE
Q 005740 571 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 647 (680)
Q Consensus 571 --~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl 647 (680)
..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+.. ||+|++|
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 379999999999999999999999999999999999999998888765 3699999999999865 9999999
Q ss_pred eCCEEEE-ecChHHHhhc
Q 005740 648 DDGRIIE-VGNHAELLHK 664 (680)
Q Consensus 648 ~~G~Ive-~Gth~eLl~~ 664 (680)
++|++++ .|++++....
T Consensus 220 ~~G~i~~~~g~~~~~~~~ 237 (638)
T PRK10636 220 EQQSLFEYTGNYSSFEVQ 237 (638)
T ss_pred eCCEEEEecCCHHHHHHH
Confidence 9999975 7998877653
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=302.18 Aligned_cols=227 Identities=30% Similarity=0.427 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCC-CCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-----CCceEEECCeeCCCCCHH
Q 005740 434 HVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~-~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-----~~G~I~idG~di~~~~~~ 507 (680)
-++.+|++.+|.. +....++|+|||+|++||++||||+||||||--++-++|+.+- .+|+|++||.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3678888777742 1245699999999999999999999999999999999999864 479999999999999999
Q ss_pred Hhhc----cEEEEccCCcCc-c------ccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHH---HHcCCCCcccccCCC
Q 005740 508 WLRE----KIGFVGQEPQLL-Q------MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEF---ILSLPCGYETLVDDD 571 (680)
Q Consensus 508 ~LR~----~I~~V~Qd~~LF-~------gTI~eNI~~g~~--~~~s~eei~~A~~~a~l~df---I~~LP~G~dT~vge~ 571 (680)
++|+ +|++|+|||.-= + .-|.|-|++... ..+-.+++.+.++.+|+.+- +.+.| .
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 9986 699999999721 1 125566665421 12335567777777776442 22333 3
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCC
Q 005740 572 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 650 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G 650 (680)
.||||||||+.||-||..+|++||=||||.|||..-..+|.+.|+++.++ -|-.++.|||.|+.++. ||||+||.+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 69999999999999999999999999999999999999999999999765 47899999999999987 9999999999
Q ss_pred EEEEecChHHHhhc-CcHHHHH
Q 005740 651 RIIEVGNHAELLHK-GRLYAKL 671 (680)
Q Consensus 651 ~Ive~Gth~eLl~~-~g~Y~~L 671 (680)
+|+|+|+-++|.+. ...|.+.
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~ 256 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRK 256 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHH
Confidence 99999999999985 4456543
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=282.68 Aligned_cols=203 Identities=28% Similarity=0.463 Sum_probs=175.9
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc--Cc-cc
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QM 525 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~--LF-~g 525 (680)
++++|+++||+|+.|+.|-|+|.+|||||||++.|.|-..|++|+|+|||+|+...+.+.--..++-|+|||- .+ +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999998 44 66
Q ss_pred cHHHHHhcCCCC----CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCC
Q 005740 526 DIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEA 599 (680)
Q Consensus 526 TI~eNI~~g~~~----~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEa 599 (680)
||.||+.++..+ ..+. -...-+.....+-+..+|.|++-.++. +.|||||||-++++-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999886321 1221 112233444556788999999999988 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-HhhcCEEEEEeCCEEEEe
Q 005740 600 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 600 TSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst-i~~aD~I~vl~~G~Ive~ 655 (680)
|+||||.+...|++.=+++-++ .+-|+++|||.+.- +..-+|.++|++|+||-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999887777653 46799999999965 667899999999999964
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.9e-34 Score=333.40 Aligned_cols=207 Identities=29% Similarity=0.490 Sum_probs=158.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ .++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EE
Confidence 3899999999964 36999999999999999999999999999999999999999999999873 1 26
Q ss_pred EEEccCCcC-ccccHHHHHhcCCC-----------------CCCCHHHHHHHHH-------------HhcHHHHHHcCCC
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYGCP-----------------KDVKNEDIEWAAK-------------QAYVHEFILSLPC 562 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g~~-----------------~~~s~eei~~A~~-------------~a~l~dfI~~LP~ 562 (680)
++++|++.. ..+++.+++..+.. .+..++.+...++ ...+.+.+..+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 778886642 23667766543210 0000111110000 11223334333
Q ss_pred Ccc--cccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh
Q 005740 563 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 640 (680)
Q Consensus 563 G~d--T~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~ 640 (680)
|++ ..+ ..||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ +.|+|+|||+...+..
T Consensus 147 gl~~~~~~--~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 147 GLDPDAAL--SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRN 218 (635)
T ss_pred CCCCCCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHH
Confidence 332 211 379999999999999999999999999999999999999999999876 2599999999999875
Q ss_pred -cCEEEEEeCCEEEE-ecChHHHhhc
Q 005740 641 -VDRIVVIDDGRIIE-VGNHAELLHK 664 (680)
Q Consensus 641 -aD~I~vl~~G~Ive-~Gth~eLl~~ 664 (680)
||+|++|++|+++. .|++++.++.
T Consensus 219 ~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 219 MATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred hcCeEEEEECCEEEEecCCHHHHHHH
Confidence 99999999999985 5999887654
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.9e-35 Score=361.84 Aligned_cols=208 Identities=23% Similarity=0.383 Sum_probs=171.6
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 525 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~g 525 (680)
..+|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .|+.++||+|+..+| ..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45999999999999999999999999999999999999998 999999999987654 378899999998777 56
Q ss_pred cHHHHHhcCCC----C-------CCCHH----------HH---HHHHHHhc------HHHHHH--cCCCCcccccCC---
Q 005740 526 DIKSNIMYGCP----K-------DVKNE----------DI---EWAAKQAY------VHEFIL--SLPCGYETLVDD--- 570 (680)
Q Consensus 526 TI~eNI~~g~~----~-------~~s~e----------ei---~~A~~~a~------l~dfI~--~LP~G~dT~vge--- 570 (680)
|++||+.|+.. . +.+.+ ++ .+++...+ .++.++ .|.+-.||.||+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999988521 0 11111 11 11111111 123333 456667999997
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc--chHhhcCEEEEEe
Q 005740 571 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--STIKAVDRIVVID 648 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl--sti~~aD~I~vl~ 648 (680)
+.||||||||++||||++.+|++|+|||||++||+.+...|.+.|+++.+. .|+|+|+++|.+ .+...+|+|++|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence 489999999999999999999999999999999999999999999998642 478999999997 3566799999999
Q ss_pred CCEEEEecChHHHh
Q 005740 649 DGRIIEVGNHAELL 662 (680)
Q Consensus 649 ~G~Ive~Gth~eLl 662 (680)
+|+++..|+.++++
T Consensus 413 ~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 413 EGQIVYQGPRDHIL 426 (1470)
T ss_pred CceEEEeCCHHHHH
Confidence 99999999999887
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-34 Score=284.24 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=173.2
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLRE 511 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~ 511 (680)
.-|+|+||+..|.+ +++|+|||++|+|||.-+|+||+|||||||++++.+.+.|++|.+.+-|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 35999999999975 479999999999999999999999999999999999999999999999999988888 99999
Q ss_pred cEEEEccCCc---CccccHHHHHhc------CCCC-CCCHHHHHH---HHHHhcHHHHHHcCCCCcccccCCCCCChHHH
Q 005740 512 KIGFVGQEPQ---LLQMDIKSNIMY------GCPK-DVKNEDIEW---AAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 512 ~I~~V~Qd~~---LF~gTI~eNI~~------g~~~-~~s~eei~~---A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr 578 (680)
+||+|+-+-+ .=+.+++|=+.= |... +.++++..+ .++..++.+..+ -|- ..||-|||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~-r~~--------~~LS~Ge~ 177 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD-RPF--------GSLSQGEQ 177 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc-Cch--------hhcCHhHH
Confidence 9999985322 224566665532 2222 455555443 334444433211 111 37999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gt 657 (680)
||+-|||||+++|++|||||||++||....+...+.|.++... ..+.|+|+|||+...+.. .++++.+++|+++.+|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999998644 357899999999988754 89999999999998874
No 355
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-33 Score=324.37 Aligned_cols=220 Identities=34% Similarity=0.524 Sum_probs=187.8
Q ss_pred ccEEEEEEEEEcCCCC--CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC---CCceEEECCeeCCCCCHH
Q 005740 433 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~--~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p---~~G~I~idG~di~~~~~~ 507 (680)
-+++|+|++..-++.. .+.+|||||.+++|||..||.||||||||||++.|+|.-++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 4689999999987642 46799999999999999999999999999999999999975 799999999 456778
Q ss_pred HhhccEEEEccCCcCc-cccHHHHHhcCC----CCCCCHHHHHHHHHHhcHHHHHHcCCCC--cccccCC---CCCChHH
Q 005740 508 WLREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVDD---DLLSGGQ 577 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~----~~~~s~eei~~A~~~a~l~dfI~~LP~G--~dT~vge---~~LSGGQ 577 (680)
.+|+..|||+||..++ +-||+|++.|.. +.+.+.+|..+- .++.|.+|..- =||.||. +.+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~-----V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER-----VEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCChhhccceecCCCCCccccch
Confidence 9999999999999999 579999998863 122344433322 23344444333 5888985 5899999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch--HhhcCEEEEEeCCEEEEe
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst--i~~aD~I~vl~~G~Ive~ 655 (680)
|+|++||--++.||+||+||||||+||+.+..++.+.|+++.+ +|||||+.=|.+|. ....|++++|.+|+++-.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 9999999999999999999999999999999999999999985 49999999999976 577999999999999999
Q ss_pred cChHHHhh
Q 005740 656 GNHAELLH 663 (680)
Q Consensus 656 Gth~eLl~ 663 (680)
|+.+++.+
T Consensus 253 G~~~~~~~ 260 (613)
T KOG0061|consen 253 GSPRELLE 260 (613)
T ss_pred cCHHHHHH
Confidence 99988863
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.4e-34 Score=325.94 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=158.1
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCeeCCCCCH
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 506 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~-----------idG~di~~~~~ 506 (680)
++++++|+. +..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999963 235999999 9999999999999999999999999999999999998 99999876542
Q ss_pred H--HhhccEE----EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 507 R--WLREKIG----FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 507 ~--~LR~~I~----~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
+ ..+.+++ +++|.|.+|.+|++||+... + ..+++.++++..++.+.. |+.+ .+||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------DRDI--SELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHHH
Confidence 2 1122344 55566778889999999743 1 234566677766664432 2233 2699999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCC
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 650 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G 650 (680)
++||||++++|++||||||||+||+.+...+.+.|+++. . ++|+|+|+|+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999984 2 7899999999999865 9999999873
No 357
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.4e-33 Score=326.77 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=163.7
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC---CCCCceEEECCeeCCC--CCH-
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLTD--LDI- 506 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y---~p~~G~I~idG~di~~--~~~- 506 (680)
..|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|++|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 36999999999964 35999999999999999999999999999999999864 5899999865554321 111
Q ss_pred -----------HHhhccEEEEccCCcCccccHHHHHhcCCCCCCCH----HHHHHHHHHhcH----------HHHHHcCC
Q 005740 507 -----------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN----EDIEWAAKQAYV----------HEFILSLP 561 (680)
Q Consensus 507 -----------~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~----eei~~A~~~a~l----------~dfI~~LP 561 (680)
..+++.+++++|++.+...+..+|.........+. +++.++++..++ .+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12356689999988765545555542211111122 223333332222 2223322
Q ss_pred CCcccccCC---CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH
Q 005740 562 CGYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 562 ~G~dT~vge---~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
|++...-+ ..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|+|++..+
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l 404 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFL 404 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHH
Confidence 22211111 379999999999999999999999999999999999999999999875 47999999999998
Q ss_pred hh-cCEEEEEeCCEEE-EecChHHHhh
Q 005740 639 KA-VDRIVVIDDGRII-EVGNHAELLH 663 (680)
Q Consensus 639 ~~-aD~I~vl~~G~Iv-e~Gth~eLl~ 663 (680)
.. ||+|++|++|+++ ..|++++..+
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 77 9999999999997 5788876654
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.1e-33 Score=262.75 Aligned_cols=134 Identities=44% Similarity=0.692 Sum_probs=122.3
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcccc-HHHHH
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNI 531 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gT-I~eNI 531 (680)
|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999765 9999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 532 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
..++++.++++..++.+ ..++.++. ..||||||||++||||++++|++||||||||
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23667888888887755 34566655 4899999999999999999999999999997
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.9e-32 Score=302.29 Aligned_cols=209 Identities=32% Similarity=0.516 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ +++++|+||++.+|+++||||++|||||||+++|.|...|++|+|..++. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4899999999964 47999999999999999999999999999999999999999999999872 259
Q ss_pred EEEccCCcCccc-cHHHHHhcCCCCCCC--HHHHHHHHH---------H----------------hcHHHHHHcCCCCcc
Q 005740 514 GFVGQEPQLLQM-DIKSNIMYGCPKDVK--NEDIEWAAK---------Q----------------AYVHEFILSLPCGYE 565 (680)
Q Consensus 514 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~s--~eei~~A~~---------~----------------a~l~dfI~~LP~G~d 565 (680)
+|++|++.+.++ |+.|.+..|.. ... ..+..++.. . +.+..-...| |+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~ 145 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFP 145 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCC
Confidence 999999999965 99999988742 211 111111110 0 1112222222 222
Q ss_pred cccCC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCE
Q 005740 566 TLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 643 (680)
Q Consensus 566 T~vge-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~ 643 (680)
..-.. .+||||||-|++|||||+.+|+||+|||||++||.++-.-+.+-|.+. +| |+|+|||.-..+.+ |++
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence 22001 379999999999999999999999999999999999999998888765 46 99999999999987 999
Q ss_pred EEEEeCCEEE-EecChHHHhhcC
Q 005740 644 IVVIDDGRII-EVGNHAELLHKG 665 (680)
Q Consensus 644 I~vl~~G~Iv-e~Gth~eLl~~~ 665 (680)
|+-+|+|++. ..|+|+.-++++
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred eEEecCCceeEecCCHHHHHHHH
Confidence 9999999887 568888777654
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.8e-32 Score=249.64 Aligned_cols=200 Identities=27% Similarity=0.463 Sum_probs=168.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCCCHHHhh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~~~~~~LR 510 (680)
-+.++||+.+-|++ -.|-|+||+|.+||++-|.||||||||||+.-+.|+.+++ +|++.+|++++..++.. |
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 35789999988754 5899999999999999999999999999999999999985 79999999999988754 6
Q ss_pred ccEEEEccCCcCc-cccHHHHHhcCCCCCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 511 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 511 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
++||+.+||+.|| +-+|-+||.|+.+++. .......|+++.+++++..+-|+ +||||||-|+|+-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~---------tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---------TLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh---------hcCcchHHHHHHHH
Confidence 8999999999999 6799999999865443 34456778888899888888775 58999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecCh
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLH-ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~-~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth 658 (680)
+|+..|+.|+||||.|.||..-..+..+-.- +.+ ..|--++.|||.+.-+.. +||++|.+-.
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r---~agiPtv~VTHD~~Dvpa--------gsrVie~~~~ 210 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR---AAGIPTVQVTHDLQDVPA--------GSRVIEMAQW 210 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH---hcCCCeEEEecccccCCC--------CCeeeeeehh
Confidence 9999999999999999999987776665443 333 247889999999988773 4556665543
No 361
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=1.6e-32 Score=270.09 Aligned_cols=215 Identities=22% Similarity=0.471 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.+++++|+.+|.+ ..|++||||+++||+..+++|++|+||||.+++|+||.+|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 3789999999963 579999999999999999999999999999999999999999999999999874 567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-CCCCCHHHHHHHHHHhcHHHHHHcCCCC-cccccCC--CCCChHHHHHHHHHHHHc
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~-~~~~s~eei~~A~~~a~l~dfI~~LP~G-~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
||.|.|--|+ ..|+.|-|.|-. -.....+|+.. .+..|.+++.-+ +. .. ..||-|..|+|-+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccccccc---cchHHHhhhhhhHHHHHHHHHh
Confidence 9999999999 679999999842 12344555433 234566665321 11 11 279999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcCc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~g 666 (680)
.+|+++|||||.|+|||-+.+.+.+++.++++ +|.|+|.-+||++-++. ||+++.|++|+.|-+|+-++..+..|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999974 58999999999999976 99999999999999999988876433
No 362
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.98 E-value=4.2e-28 Score=259.48 Aligned_cols=406 Identities=19% Similarity=0.216 Sum_probs=265.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 217 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT--LSALL--ICSFLSIIVSVYGQYQKRASVLTQECNA 292 (680)
Q Consensus 217 srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~--lv~l~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (680)
+++|+|+....+...+....+.-.++-++.....+.-.+-..+ .+.++ ++-+-..+.+.+..+..+...+.....+
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 5688999888877777777766655555444433332211111 11111 1111122223333333333333333344
Q ss_pred HHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 005740 293 HANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI------- 365 (680)
Q Consensus 293 ~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv------- 365 (680)
.+...=...+++.++|-.|+..+.|.++.++..+.........-....++..+-+++. =-.|-|.-+|
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~ 375 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPIL 375 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeee
Confidence 4555556778999999999999999988887777766544332222211111111111 0012111111
Q ss_pred -----HhCCCC---HH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C----------CCC
Q 005740 366 -----MIGQVS---PE--QLTKYVLY---CEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL---L----------PSN 419 (680)
Q Consensus 366 -----~~g~is---~G--~l~af~~~---~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~---~----------~~~ 419 (680)
..|... .| ..-.|+.. +.....++..+...+-++.+-.+.-.|+++.++. . ++.
T Consensus 376 ~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~ 455 (728)
T KOG0064|consen 376 TSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEI 455 (728)
T ss_pred ecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCch
Confidence 112211 11 12223322 2233455556666666777777777888765531 0 110
Q ss_pred ccc------ccccccc-----cccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 420 QFL------SEGVKLQ-----RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 420 ~~~------~~~~~~~-----~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.+. .++.+.+ .....|.++||-.--|+. .-|..++||+|++|-.+-|.||+|||||+|.+.|.|+++
T Consensus 456 ~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP 533 (728)
T KOG0064|consen 456 LSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP 533 (728)
T ss_pred hhccCccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc
Confidence 000 0001100 112359999998887753 358999999999999999999999999999999999999
Q ss_pred CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC------CCCCCHHHHHHHHHHhcHHHHHHcCCC
Q 005740 489 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPC 562 (680)
Q Consensus 489 p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~------~~~~s~eei~~A~~~a~l~dfI~~LP~ 562 (680)
...|...+-- +.+|=|+||.|+.=-||.||-|-|-+ ..+.+|.|++..++.+.++- |.+-..
T Consensus 534 vy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~ 601 (728)
T KOG0064|consen 534 VYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREG 601 (728)
T ss_pred ccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhcc
Confidence 9888776532 23599999999999999999998863 24678999999999999974 555577
Q ss_pred CcccccCC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhc
Q 005740 563 GYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 641 (680)
Q Consensus 563 G~dT~vge-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~a 641 (680)
|+|.+-.= .-||||+|||+++||.++.+|+--+|||+|||+-.+-|..|.++.+.. |-+.|-|+||+|..+.-
T Consensus 602 g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~------gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 602 GWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYH 675 (728)
T ss_pred ChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc------CceEEEeecCccHHHHH
Confidence 88876553 489999999999999999999999999999999999999999998775 78999999999998766
Q ss_pred CEEEEE
Q 005740 642 DRIVVI 647 (680)
Q Consensus 642 D~I~vl 647 (680)
...+-.
T Consensus 676 ~~ll~~ 681 (728)
T KOG0064|consen 676 THLLEF 681 (728)
T ss_pred HHHHhc
Confidence 555555
No 363
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-31 Score=258.38 Aligned_cols=217 Identities=29% Similarity=0.400 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHh-h
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~L-R 510 (680)
-++++|++.+-.++ +++||+|||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||.||.++++++- |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 37889999988642 4799999999999999999999999999999999997 69999999999999999999885 6
Q ss_pred ccEEEEccCCcCccc-cHHHHHhcCCCC-----C---CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 511 EKIGFVGQEPQLLQM-DIKSNIMYGCPK-----D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~---~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
.-|.+-+|.|.=+.| |+++=++.+.+. . ...+++.++++..++++... +-.|++ .+|||||.|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN~-GFSGGEkKR~ 153 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVNE-GFSGGEKKRN 153 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccCC-CcCcchHHHH
Confidence 779999999999987 787777654210 1 12457788888888877221 112222 5899999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhc--CEEEEEeCCEEEEecChH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~a--D~I~vl~~G~Ive~Gth~ 659 (680)
-|+.+++-+|++.|||||-|+||..+-+.|.+.+++++. +++++++|||+-..+... |++.||-+|||+.+|.+
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 999999999999999999999999999999999999984 589999999998887775 99999999999999999
Q ss_pred HHhh
Q 005740 660 ELLH 663 (680)
Q Consensus 660 eLl~ 663 (680)
||..
T Consensus 230 el~~ 233 (251)
T COG0396 230 ELAE 233 (251)
T ss_pred HHHH
Confidence 7775
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5.2e-31 Score=261.71 Aligned_cols=193 Identities=27% Similarity=0.445 Sum_probs=159.9
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
..++|+||||++++||++||||++|||||||+|+|.|.|+|++|+|.++|.--.-+++ ..|+-| +-|-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchH
Confidence 3479999999999999999999999999999999999999999999999952211110 133333 25899
Q ss_pred HHHhc-----CCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 005740 529 SNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 603 (680)
Q Consensus 529 eNI~~-----g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 603 (680)
|||.+ |.....-++.+.+..+-|.+.||+.. |- ++.|-|.+-|||.|=|.-.+|+|||+||+.|..
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99975 31112234556678888999999853 43 368999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+.=.++-.+-++++.+ +++|+|+|+|.++.|++ |||+++|++|+|+..|+.+|.++.
T Consensus 179 D~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 179 DAAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred CHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 99988877778887753 46999999999999987 999999999999999999999853
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.2e-31 Score=273.02 Aligned_cols=189 Identities=26% Similarity=0.348 Sum_probs=126.1
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHH-HHHhcCCCCCCceEEECC-------eeCCCC---CHHHhhc-cEEEE
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG-------FPLTDL---DIRWLRE-KIGFV 516 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~-~LL~r~y~p~~G~I~idG-------~di~~~---~~~~LR~-~I~~V 516 (680)
+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+.+ ..+..+ +...++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 35799999999999999999999999999996 4442 134432210 111111 1111222 23444
Q ss_pred ccCCc-Ccc--cc---HHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCccc-ccCC--CCCChHHHHHHHHHH
Q 005740 517 GQEPQ-LLQ--MD---IKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIAR 585 (680)
Q Consensus 517 ~Qd~~-LF~--gT---I~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT-~vge--~~LSGGQrQRIaIAR 585 (680)
.|++. .++ .+ +.+...+-.. .....++..+ .+..+ |+.. .... ..||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG---------FLVDV--GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHH---------HHHHC--CCCcccccCccCcCCHHHHHHHHHHH
Confidence 45443 211 12 2222221100 0001111122 23332 2221 1222 379999999999999
Q ss_pred HHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE------eCCEEEEec
Q 005740 586 AILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 656 (680)
Q Consensus 586 All~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl------~~G~Ive~G 656 (680)
|++++| ++|||||||++||+.+.+.+.+.|+++.+ +|.|+|+|||+++.++.||+|++| ++|+|+|+|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 59999999999999999999999998753 478999999999999999999999 999999987
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7.6e-31 Score=250.25 Aligned_cols=215 Identities=23% Similarity=0.430 Sum_probs=179.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC-eeCCCCCHHHh-hc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG-~di~~~~~~~L-R~ 511 (680)
.++.+||+.++++ -.+|+|+||++.|||.-+|+||+|+||||++..|.|--+|++|+++++| .|++.++.... |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4788999999975 4699999999999999999999999999999999999999999999999 99999998886 66
Q ss_pred cEEEEccCCcCc-cccHHHHHhcCCCCCC-------------CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHH
Q 005740 512 KIGFVGQEPQLL-QMDIKSNIMYGCPKDV-------------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 577 (680)
Q Consensus 512 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~-------------s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQ 577 (680)
-||==+|.|..| +-|++||+.++++.+- ..++|.+.+...++.+--.. -...||-||
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~---------~A~~LSHGq 152 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR---------LAALLSHGQ 152 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh---------hhhhhccch
Confidence 799999999999 5699999988743221 11245555555444332211 113799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEec
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 656 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~G 656 (680)
||++-|+--+..+|++|+||||++++-.+...+.-+.|+++. +++++++|-|.+..++. ||+|-||..|.|..+|
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la----~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA----GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh----cCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999995555555677788874 46899999999999987 9999999999999999
Q ss_pred ChHHHhhc
Q 005740 657 NHAELLHK 664 (680)
Q Consensus 657 th~eLl~~ 664 (680)
+-+|+-++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998754
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.3e-30 Score=269.00 Aligned_cols=193 Identities=27% Similarity=0.396 Sum_probs=138.0
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh-----c-CCC----CCCce-----------EEECCeeCCCCCHH--
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LYE----PSDGQ-----------IYIDGFPLTDLDIR-- 507 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-----r-~y~----p~~G~-----------I~idG~di~~~~~~-- 507 (680)
..|||||++||.|+.++|+|.||||||||++-++ + +.. |..++ |.+|..||..-...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998652 2 222 43333 55565555432111
Q ss_pred --------Hhhc----------------cEEEEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCC
Q 005740 508 --------WLRE----------------KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 562 (680)
Q Consensus 508 --------~LR~----------------~I~~V~Qd~~L-F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~ 562 (680)
.+|+ .+.|..++... .+-|+.||+.|... ....++..++++..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~v----------- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDV----------- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHc-----------
Confidence 1111 13333333332 34566666655421 11112233333333
Q ss_pred Cccc-ccCC--CCCChHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc
Q 005740 563 GYET-LVDD--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 636 (680)
Q Consensus 563 G~dT-~vge--~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls 636 (680)
|++. ..+. ..||||||||++|||||+++ |+++||||||++||+.+.+.+.+.|+++.+ +|.|+|+|+|++.
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~~ 233 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNLD 233 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 3332 2344 48999999999999999997 799999999999999999999999998863 4789999999999
Q ss_pred hHhhcCEEEEE------eCCEEEEecCh
Q 005740 637 TIKAVDRIVVI------DDGRIIEVGNH 658 (680)
Q Consensus 637 ti~~aD~I~vl------~~G~Ive~Gth 658 (680)
.++.||+|++| ++|+|+++|++
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999999 89999999974
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=282.79 Aligned_cols=204 Identities=28% Similarity=0.419 Sum_probs=174.3
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
.-++++||+|+|+++ +++++++||.|++|+++|||||+|+|||||+|+|+|-..|.+|+|.++-. + +
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 358999999999753 57999999999999999999999999999999999999999999988652 2 5
Q ss_pred EEEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~-~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
|||.+|+. .++ +.|+.|++.-+ .++..+.+++..+...+...--. .+.| ..||||||-|+++|+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~-~~~~~e~~~r~~L~~f~F~~~~~------~~~v--~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEG-FPDGDEQEVRAYLGRFGFTGEDQ------EKPV--GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhh-CccccHHHHHHHHHHcCCChHHH------hCch--hhcCHhHHHHHHHHHHhccC
Confidence 99999998 444 45899999877 34555788888888877644322 1222 26999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEe-cChHHHhhcC
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELLHKG 665 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~-Gth~eLl~~~ 665 (680)
|.+|||||||..||.+|-..+.++|.+. +| |+|+|||.-..+.. |++|+++++ ++.+. |++++-.+..
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF-----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC-----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 9999999999999999999999999886 23 99999999999987 999999999 88877 8988877654
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.7e-30 Score=239.27 Aligned_cols=225 Identities=24% Similarity=0.414 Sum_probs=175.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC-----eeCCCCCHHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-----FPLTDLDIRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG-----~di~~~~~~~ 508 (680)
-++.+++|..|.++ .--+||||++-|||..||||+||||||||+++|.+-..|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47889999999753 468999999999999999999999999999999999999999999976 4555555554
Q ss_pred h----hccEEEEccCCcCccccHHHHHhcCCC--CCCCHHHHHHH------HHHhcHHHHHHcCCCCcccccCC--CCCC
Q 005740 509 L----REKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIEWA------AKQAYVHEFILSLPCGYETLVDD--DLLS 574 (680)
Q Consensus 509 L----R~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~s~eei~~A------~~~a~l~dfI~~LP~G~dT~vge--~~LS 574 (680)
- |.--|+|.|+|- |-+++... .++- |...+. --.+.+.||+++.+-..+ .+.+ +.+|
T Consensus 83 RR~L~RTeWG~VhQnP~-------DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~~~-RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVEIDLD-RIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCcc-------ccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcccCcc-cccCcccccc
Confidence 3 445699999984 22322110 0111 111110 012234577776554433 3344 5899
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv 653 (680)
||.+||+-|||-|+..|+++.+||||-+||..-++.+.+.++.+-.++ +-.+++|||.+...+- |||..||.+|+++
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l--~la~viVTHDl~VarLla~rlmvmk~g~vv 231 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL--GLAVVIVTHDLAVARLLADRLMVMKQGQVV 231 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc--CceEEEEechhHHHHHhhhcceeecCCCEe
Confidence 999999999999999999999999999999999999999998887653 6799999999999886 9999999999999
Q ss_pred EecChHHHhhc-CcHHHHHH
Q 005740 654 EVGNHAELLHK-GRLYAKLV 672 (680)
Q Consensus 654 e~Gth~eLl~~-~g~Y~~L~ 672 (680)
|.|--++.+.. ...|.+|.
T Consensus 232 e~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 232 ESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccccccCCCCchHHHH
Confidence 99988888875 55677765
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=5.4e-30 Score=255.23 Aligned_cols=164 Identities=23% Similarity=0.319 Sum_probs=133.5
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC---------CceEEECCeeCCCCCHHHhhccEEEEccCCcCcc
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---------DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 524 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---------~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~ 524 (680)
+++++++++| .++|+||||||||||++.|.++..|. .|++.++|.++.. ...+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 3478888887754 23468899999999888
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCC
Q 005740 525 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 600 (680)
Q Consensus 525 gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll----~~p~ILILDEaT 600 (680)
|+. ..++++.++++. ++-.++.+ ..||||||||++||||+. ++|++++|||||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~~~~--~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKVQRL--SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCccccch--hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 431 123455555554 22222222 369999999999999986 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 601 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 601 SaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
++||+++...+.+.|+++. ++.|+|+|||++..++.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~----~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFS----KETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999884 35899999999999999999999864
No 371
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3e-30 Score=257.85 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=162.1
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEE-ccCCcCc-cccHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV-GQEPQLL-QMDIK 528 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V-~Qd~~LF-~gTI~ 528 (680)
++.+||||+||||++++.+|++|+||||.+|+|.|+..|++|.|.++|.+-.+-..+.+|+ +++| .|...|. +--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~-~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHH-HHHHhhhhheeeeechhh
Confidence 5899999999999999999999999999999999999999999999999887755555554 5544 3443332 11122
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCC-----CCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP-----CGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP-----~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
|-+ ++.++.....-++|-+++. -+++..+-. +.||=|||-|.-||-|||++|+||.|||||=
T Consensus 117 ds~-----------~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 117 DSL-----------EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhH-----------HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 222 2222222222222222211 134444443 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
+||......|.+.+++..+ ..+.||+..||-++-|.. ||||++|++|+++..|+.++|.++-|.|++++
T Consensus 186 gLDV~aq~~ir~Flke~n~--~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~ 255 (325)
T COG4586 186 GLDVNAQANIREFLKEYNE--ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255 (325)
T ss_pred CcchhHHHHHHHHHHHHHH--hhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEE
Confidence 9999999999999998765 368999999999998866 99999999999999999999998877776543
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-29 Score=236.50 Aligned_cols=190 Identities=25% Similarity=0.411 Sum_probs=157.8
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+.+|++..- .+..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.++.... ++.++.+-|
T Consensus 4 ~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 4 EAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred hhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 345554433 3457999999999999999999999999999999999999999999999999998755 444777777
Q ss_pred EccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC
Q 005740 516 VGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 516 V~Qd~~LF-~gTI~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ 592 (680)
+.-.+-+= .-|+.||++|-+. ...+++.+++|+..+++.++ +.+|-+ +||-||+.|+||||-++..+|
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~--------~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG--------QLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh--------hcchhHHHHHHHHHHHcCCCC
Confidence 77666655 6799999998632 12467899999999999885 456655 499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhc
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 641 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~a 641 (680)
+-||||||+|||.+.+..+...+..... +|-.||.-||...-+..+
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~---~GGiVllttHq~l~~~~a 196 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAA---QGGIVLLTTHQPLPIASA 196 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhc---CCCEEEEecCCccCCCcc
Confidence 9999999999999999998887777653 466899999988766443
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=6.1e-29 Score=250.85 Aligned_cols=192 Identities=20% Similarity=0.180 Sum_probs=146.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEee-CCcEEEEeCCCCCcHHHHHHHHh-cCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~-~Ge~vAIVG~SGsGKSTL~~LL~-r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.|+++|+. +|.++ ++|+|+.. +|+.++|+||||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 68999998 88532 56777654 59999999999999999999999 5887777777665 2334455566788
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHH--HHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~--~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
.|++++|++. ....++++. ..+.++..+.. +..++.+++..-+ .+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~----~~~~~~r~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGG----KKYRVERSR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECC----eEEEEEEec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence 8999999983 333333433 45555555432 3333333332211 3799999999999999974
Q ss_pred ----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 590 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 590 ----------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
+|+++||||||++||+.+.+.+.+.++++.+ +++|+|+|||+++.+.. ||+|+++++|-+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999998853 37899999999998765 899999999853
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.1e-28 Score=251.62 Aligned_cols=190 Identities=24% Similarity=0.297 Sum_probs=139.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh----------------cCCCCCCc-----
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------RLYEPSDG----- 492 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~----------------r~y~p~~G----- 492 (680)
.|+++|- .+|.+ ..++++++ |+.++|+||||||||||+++|. ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3566653 24653 35888887 8999999999999999999998 45556666
Q ss_pred ---eEEECCeeCCCC---CHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHH--HcCCCCc
Q 005740 493 ---QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCGY 564 (680)
Q Consensus 493 ---~I~idG~di~~~---~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI--~~LP~G~ 564 (680)
+|.+++.+-... +...+++.+++++|++.++. ..++.+|+..+++..++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 666666332111 22346677888887765532 246777888888877664310 0123333
Q ss_pred cccc-------CC--CCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEE
Q 005740 565 ETLV-------DD--DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 631 (680)
Q Consensus 565 dT~v-------ge--~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvI 631 (680)
.+.+ .+ ..||||||||++||||++ ++|+++||||||++||+++.+.+.+.|+++. +++|+|++
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~----~~~~ii~~ 217 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS----DGAQFITT 217 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEE
Confidence 2222 22 389999999999999996 4689999999999999999999999999874 36899999
Q ss_pred ecCcchHhhcCEEEEEe
Q 005740 632 AHRLSTIKAVDRIVVID 648 (680)
Q Consensus 632 aHRlsti~~aD~I~vl~ 648 (680)
+|+.+..+.||+|++|+
T Consensus 218 ~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 218 TFRPELLEVADKFYGVK 234 (243)
T ss_pred ecCHHHHhhCCEEEEEE
Confidence 99999899999999996
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.5e-28 Score=228.04 Aligned_cols=202 Identities=29% Similarity=0.443 Sum_probs=145.6
Q ss_pred EEEEEEEEEcC----CCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC----eeCCCCCH
Q 005740 435 VQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG----FPLTDLDI 506 (680)
Q Consensus 435 I~f~nVsF~Y~----~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG----~di~~~~~ 506 (680)
+..+||+.++. +.-.-||++|+||+++.||++++=||||||||||++.|-+-|.|++|+|.+.- +|+-.-.+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 66777766552 11124799999999999999999999999999999999999999999999854 34444443
Q ss_pred HH----hhccEEEEccCCcCccc-----cHHHHH-hcCCCCCCCHHHHHHHHHHhcHHHHHH--cCCCCcccccCCCCCC
Q 005740 507 RW----LREKIGFVGQEPQLLQM-----DIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDDLLS 574 (680)
Q Consensus 507 ~~----LR~~I~~V~Qd~~LF~g-----TI~eNI-~~g~~~~~s~eei~~A~~~a~l~dfI~--~LP~G~dT~vge~~LS 574 (680)
.+ -|+.||||+|---.... -+.|-+ ..| ...|..... +.+... ++|+.+-. +....+|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g----v~~~~a~~~-----a~~Ll~rLnlperLW~-LaPaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG----VPREVARAK-----AADLLTRLNLPERLWS-LAPATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC----CCHHHHHHH-----HHHHHHHcCCCHHHhc-CCCcccC
Confidence 33 36779999993211110 122222 122 222221111 112222 34444332 1234899
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 649 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~ 649 (680)
|||+||+-|||.++-|-|||+|||||++||+.+.+.+.+.|++.+ .+|..+|=|=|.-+.=.. |||++-|..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K---a~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK---ARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH---hcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998876 368899999999876554 999987753
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=2.3e-27 Score=283.61 Aligned_cols=222 Identities=21% Similarity=0.385 Sum_probs=191.8
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC-CCHHHhhc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLRE 511 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-~~~~~LR~ 511 (680)
..+..+|++..|+.+. .+.+++|+.|++||+.++-|++||||||+++++.|...|++|+++++|.++.. .+.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998642 29999999999999999999999999999999999999999999999999975 45566999
Q ss_pred cEEEEccCCcCc-cccHHHHHhcCC-CCCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLL-QMDIKSNIMYGC-PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF-~gTI~eNI~~g~-~~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+|||.||+..|+ .-|.||.+.+-. -..... +.+.+.++..++.++... . .+++|||+|.||++|-
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~--~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q--VRTYSGGNKRRLSFAI 711 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c--hhhCCCcchhhHHHHH
Confidence 999999999998 569999997632 112222 336677777777666443 2 2479999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|++.+|++++|||||+++||.+++.+.+.+++++++ ++.+|..||-++..+. |||+..|.+|++.--|+.++|-.+
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~---g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN---GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999753 5699999999999887 999999999999999999999877
Q ss_pred CcHH
Q 005740 665 GRLY 668 (680)
Q Consensus 665 ~g~Y 668 (680)
-|.+
T Consensus 789 fG~g 792 (885)
T KOG0059|consen 789 YGSG 792 (885)
T ss_pred cCCc
Confidence 5544
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=6.1e-27 Score=242.16 Aligned_cols=183 Identities=17% Similarity=0.285 Sum_probs=137.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECCe-eCCCCC--HHHhhccEEEEccCCcC---------c-cccHH
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD--IRWLREKIGFVGQEPQL---------L-QMDIK 528 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~-di~~~~--~~~LR~~I~~V~Qd~~L---------F-~gTI~ 528 (680)
...++||||||||||||++.|.++..|+ .|+++..|. |+-... .+.-+..|++++|++.- . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999999886 568999887 542211 11234589999999632 1 45788
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHhcHH----HH---------HHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 529 SNIMYGCP-------KDVKNEDIEWAAKQAYVH----EF---------ILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 529 eNI~~g~~-------~~~s~eei~~A~~~a~l~----df---------I~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
+||..+.. .....+++.++++.+++. .| +.+.++-.++.+ ..||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~--~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL--TELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 88866521 123457888888888764 11 111111111211 379999999999999997
Q ss_pred ----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEe--CCE
Q 005740 589 ----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID--DGR 651 (680)
Q Consensus 589 ----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~--~G~ 651 (680)
++|+++||||||++||+++.+.+.+.|+++. +|.|+|+||||.+.++.||+|+-+. ||.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 6889999999999999999999999998873 4689999999999999999998764 553
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=7.1e-26 Score=278.28 Aligned_cols=212 Identities=22% Similarity=0.336 Sum_probs=154.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHH---------HHhcCCCCCCc--------eEEE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSDG--------QIYI 496 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~---------LL~r~y~p~~G--------~I~i 496 (680)
.++++|++. .+|+|+||+|++||.++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478888751 3799999999999999999999999999999 55664322111 2455
Q ss_pred CCeeCCCCCH----------HHhh---------ccE-----EEEccC------------------C--------------
Q 005740 497 DGFPLTDLDI----------RWLR---------EKI-----GFVGQE------------------P-------------- 520 (680)
Q Consensus 497 dG~di~~~~~----------~~LR---------~~I-----~~V~Qd------------------~-------------- 520 (680)
|-.++..-.. +++| ++. .+.+|. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5555543111 1344 111 122221 1
Q ss_pred ------cCc-cccHHHHHhcCCCCCC-----CHHHHHHHHHHhcHHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHH
Q 005740 521 ------QLL-QMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIAR 585 (680)
Q Consensus 521 ------~LF-~gTI~eNI~~g~~~~~-----s~eei~~A~~~a~l~dfI~~LP~G~dT~-vge--~~LSGGQrQRIaIAR 585 (680)
..+ .-||.||+.++. .++ +.+++.+.++ .+..+ |++.. .+. .+||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv-~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTA-YEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCH-HHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 133 348999998873 222 1233333332 22222 55543 454 489999999999999
Q ss_pred HHc---cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEe------CCEEEEec
Q 005740 586 AIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVG 656 (680)
Q Consensus 586 All---~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~------~G~Ive~G 656 (680)
||+ ++|++|||||||++||+++.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|++|+ +|++++.|
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeC
Confidence 998 69999999999999999999999999999864 4789999999999999999999996 89999999
Q ss_pred ChHHHhhcC
Q 005740 657 NHAELLHKG 665 (680)
Q Consensus 657 th~eLl~~~ 665 (680)
+++++.+..
T Consensus 900 tpeel~~~~ 908 (1809)
T PRK00635 900 SPEELIHLH 908 (1809)
T ss_pred CHHHHHhcc
Confidence 999998754
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=7.1e-26 Score=268.24 Aligned_cols=95 Identities=34% Similarity=0.540 Sum_probs=88.2
Q ss_pred CCCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 571 DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
..||||||||++|||||+++| +++||||||++||+++.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|++|
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIiitH~~~~i~~aD~ii~L 905 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVVIEHNLDVIKTADWIIDL 905 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEe
Confidence 489999999999999999999 99999999999999999999999999863 478999999999999999999999
Q ss_pred ------eCCEEEEecChHHHhhcCcHH
Q 005740 648 ------DDGRIIEVGNHAELLHKGRLY 668 (680)
Q Consensus 648 ------~~G~Ive~Gth~eLl~~~g~Y 668 (680)
++|+|++.|+++++.+..+.|
T Consensus 906 gp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 906 GPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred cCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 799999999999999866443
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=3.4e-26 Score=229.23 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=131.4
Q ss_pred eeEEeeCCcEEEEeCCCCCcHHHHHHHHh----cCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCC-----cCcc-c
Q 005740 456 VCLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQ-M 525 (680)
Q Consensus 456 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~----r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~-----~LF~-g 525 (680)
.++++.+| +++|+||||||||||++.|. |.-.|..|.+.-+.. .+....-+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~---~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK---LIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHH---HHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 35667777 99999999999999999994 888888888762222 223345677899999998 4443 3
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH------HHHHHHHccCCCeEEEeCC
Q 005740 526 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEA 599 (680)
Q Consensus 526 TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR------IaIARAll~~p~ILILDEa 599 (680)
|+.||+.++ + ++++.+.+ .+.| ..|||||||| ++||||++.+|++++||||
T Consensus 92 ~~~~~~~~~-~----~~~~~~~~---------~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFC-H----QGESNWPL---------LDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeee-c----hHHHHHHH---------hcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 999999876 2 34443333 1111 3799999996 7999999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCC
Q 005740 600 TSALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 650 (680)
Q Consensus 600 TSaLD~~tE~-~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G 650 (680)
|++||+++.. .+.+.|+++.++ .++|+|+|||.+..+..||+|++|++.
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 9999999998 999999887531 268999999999999999999999753
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=2.5e-27 Score=238.72 Aligned_cols=185 Identities=23% Similarity=0.256 Sum_probs=137.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh-cc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR-~~ 512 (680)
.|+++|.- +|.+ ..+++++++ +.+||+||+||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 57788875 7853 469999988 899999999999999999997 44565432 334 67
Q ss_pred EEEEccCCcCccc-cHHHHHhcCCCCCCCHHH-----HHHHHHH----hcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 513 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNED-----IEWAAKQ----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 513 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~ee-----i~~A~~~----a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
+++++|+..++.. |.++++.+-.. ....+. +...... .+-...+.+||++.++.++ .||||||||++
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~--~lS~G~~~r~~ 137 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS--NLSGGEKTLSS 137 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh--hcCHHHHHHHH
Confidence 9999999877654 67777655421 100000 0000000 0111134567888877654 69999999999
Q ss_pred HHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 583 IARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 583 IARAll----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
||||++ ++|++++|||||++||+.+...+.+.++++. ++.|+|+|||+....+.||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999996 3589999999999999999999999999873 35799999999998999999999964
No 382
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.8e-25 Score=245.11 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=175.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~ 512 (680)
-++++|++.. ..++|+||++++||+++|.|-=|||+|=+++.|.|.-++.+|+|.+||++++--++ +..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3677777531 25899999999999999999999999999999999999999999999998877764 478899
Q ss_pred EEEEccCCc---C-ccccHHHHHhcCCCCCCCHH-HHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQ---L-LQMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~---L-F~gTI~eNI~~g~~~~~s~e-ei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARA 586 (680)
|+|||-|-. | ...||++||.+......+.. -+..+.+.+-+.+++.+|--.-...--. .+||||-+|++.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 999998654 4 47899999988721111111 3555667777778888774322221112 4899999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecC
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gt 657 (680)
|..+|+||||||||-++|.-+.++|.+.|+++.+ +|+++|+||-.+..+. .||||+||.+|+|+.+=+
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999974 5899999999998866 799999999999997433
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=8.7e-27 Score=218.67 Aligned_cols=208 Identities=23% Similarity=0.390 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++++||+-+- =|-.+|.++.+||.+=+|||+|||||||+.-+.|+. |-+|+|.++|.|+..++..+|-++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5677776421 367889999999999999999999999999999998 69999999999999999999999999
Q ss_pred EEccCC-cCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcc--
Q 005740 515 FVGQEP-QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR-- 589 (680)
Q Consensus 515 ~V~Qd~-~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~-- 589 (680)
|..|+. -.|...+..-+++..|...--+++.+.|++-+++| .+|. ..|||||.||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998754 48999999999988432122334555555555443 3443 3899999999999988876
Q ss_pred ---C--CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc-chHhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 590 ---D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 590 ---~--p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl-sti~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
| .++|+||||-+.||...+..+-..|.++.+ .|.|+|+-.|.| .|+++||++..+..|++..+|.-+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~---~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh---CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 3 379999999999999999999888888864 589999999999 5799999999999999999999999986
Q ss_pred c
Q 005740 664 K 664 (680)
Q Consensus 664 ~ 664 (680)
.
T Consensus 222 ~ 222 (248)
T COG4138 222 P 222 (248)
T ss_pred h
Confidence 4
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=5.5e-26 Score=245.17 Aligned_cols=199 Identities=25% Similarity=0.370 Sum_probs=164.6
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
.-|.|.||+|+|++. ..+++++||-|.+++++|+|||+|+|||||+||+.+...|+.|.|.-.-+. +
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 358999999999864 379999999999999999999999999999999999999999999765433 2
Q ss_pred EEEEcc---CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 513 IGFVGQ---EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 513 I~~V~Q---d~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
+++-.| |...++-|..||+.=--++.-..|++...+...|+......-|. ++||+|||-|++.||.+++
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~--------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM--------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch--------hhcccccchhHHHHHHHhc
Confidence 333333 44567888889985331213456788889999888654443333 4799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEE-ecCh
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNH 658 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive-~Gth 658 (680)
.|.||+|||||++||.+|-....++|.+. .-+||+|+|..-.|.+ |++|.+.+||.+.. .|.+
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999886 2499999999999987 99999999999875 3443
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.7e-25 Score=262.59 Aligned_cols=197 Identities=28% Similarity=0.483 Sum_probs=166.5
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC--CCCceEEECCeeCCCCCHHHhhccEEEEccC-CcCccc
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFVGQE-PQLLQM 525 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~--p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd-~~LF~g 525 (680)
.+..|+|||=-++||..+||+|+||||||||++.|++=-. ..+|+|+|||.+..+ +..+|.+|||.|+ .|+=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3569999999999999999999999999999999998754 357999999999766 8899999999984 557688
Q ss_pred cHHHHHhcCC----CCCCCHHH----HHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCC-CeE
Q 005740 526 DIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP-AIL 594 (680)
Q Consensus 526 TI~eNI~~g~----~~~~s~ee----i~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p-~IL 594 (680)
||||-++|.. +.++++|| ++++.+..++.++ =|..||. ..||..||.|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999999863 34566554 3444444444433 3556775 489999999999999999999 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch--HhhcCEEEEEe-CCEEEEecCh
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVID-DGRIIEVGNH 658 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst--i~~aD~I~vl~-~G~Ive~Gth 658 (680)
.||||||+||+++...|++.++++.+ .|+|+++.=|.+|. .+..|+++.|+ +|+.|-.|+.
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~---tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLAD---TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHh---cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 99999999999999999999999974 59999999999987 57899999996 6888888764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=6.1e-24 Score=251.43 Aligned_cols=91 Identities=33% Similarity=0.539 Sum_probs=84.2
Q ss_pred cCC--CCCChHHHHHHHHHHHHcc---CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcC
Q 005740 568 VDD--DLLSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 642 (680)
Q Consensus 568 vge--~~LSGGQrQRIaIARAll~---~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD 642 (680)
++. ..||||||||++|||||++ +|+++||||||++||+.+.+.+.+.|+++.+ +|+|+|+|+|++..++.||
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIvi~H~~~~i~~aD 898 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVVIEHNLDVIKTAD 898 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCC
Confidence 454 4899999999999999997 5999999999999999999999999999863 4789999999999999999
Q ss_pred EEEEE------eCCEEEEecChHHH
Q 005740 643 RIVVI------DDGRIIEVGNHAEL 661 (680)
Q Consensus 643 ~I~vl------~~G~Ive~Gth~eL 661 (680)
+|++| ++|+|++.|+++++
T Consensus 899 ~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 899 YIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999 79999999999986
No 387
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=2.2e-21 Score=197.95 Aligned_cols=255 Identities=22% Similarity=0.296 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--------
Q 005740 135 LVAVASLIVAAVSEITMPRILAEAVFSAQREE-A--MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA----N-------- 199 (680)
Q Consensus 135 ~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~-~--~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~----~-------- 199 (680)
++++++.++..+..+..|.+++..++.....+ . .........++++.++...+.....+..... .
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999888876532221 1 1111011111111111222211111111100 0
Q ss_pred ---HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005740 200 ---IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 276 (680)
Q Consensus 200 ---~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~ 276 (680)
...|.+||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|++++++++..|+..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 12389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 277 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVM 356 (680)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (680)
.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+........+.....++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777777776666666666778
Q ss_pred HHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
Q 005740 357 AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYAT 389 (680)
Q Consensus 357 ~l~~g~~l-v~~g~is~G~l~af~~~~~~l~~~~ 389 (680)
++++|+++ +..|++|+|++++++.|...+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 88999999 9999999999999999998888774
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=226.61 Aligned_cols=213 Identities=27% Similarity=0.484 Sum_probs=176.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeC-CCCCHHHhhc-
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLRE- 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di-~~~~~~~LR~- 511 (680)
-++++|++-.-+. +.+.+++|||++++||++||.|-+|-|-+-|+.+|+|+..|.+|+|+++|+|+ ..++...+|+
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4789999876432 24689999999999999999999999999999999999999999999999997 6778888765
Q ss_pred cEEEEccCCc----CccccHHHHHhcCCCCC--------CCHHHHHHHHHHhcHHHHHHcCCCCccccc-CC----CCCC
Q 005740 512 KIGFVGQEPQ----LLQMDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD----DLLS 574 (680)
Q Consensus 512 ~I~~V~Qd~~----LF~gTI~eNI~~g~~~~--------~s~eei~~A~~~a~l~dfI~~LP~G~dT~v-ge----~~LS 574 (680)
-+||||.|.+ ..+-|+.||+.++...+ .+..++.+.+ .+.|++ ||-.- |. ++||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~----fdVr~~~~~~~a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEE----FDVRAPSPDAPARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHH----cCccCCCCCcchhhcC
Confidence 5999999985 66889999998874211 1223333322 233443 34332 22 3899
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 653 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv 653 (680)
||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.++ +|+.|++|+-.|..+.. ||||.||.+|+|+
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 9999999999999999999999999999999999999999999874 58999999999988755 9999999999999
Q ss_pred EecChHH
Q 005740 654 EVGNHAE 660 (680)
Q Consensus 654 e~Gth~e 660 (680)
.....++
T Consensus 483 ~~~~~~~ 489 (501)
T COG3845 483 GIVPPEE 489 (501)
T ss_pred ccccccc
Confidence 8877665
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.2e-24 Score=224.41 Aligned_cols=183 Identities=19% Similarity=0.189 Sum_probs=133.0
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee-C------CCCCHHHhhccEEEEccCC--cCccccHHHHH-hc
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L------TDLDIRWLREKIGFVGQEP--QLLQMDIKSNI-MY 533 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d-i------~~~~~~~LR~~I~~V~Qd~--~LF~gTI~eNI-~~ 533 (680)
..++|+||+|||||||+..|.++..++.|+++.++.+ + ...+.....-.+.+..|++ .++..+++++- .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765431 1 1111223344455555543 34555555442 11
Q ss_pred C-CCCCCCHHHHHHHHHHhcHHHHHHc--CCCCcccccCC-----------CCCChHHHHHHHHHHHHcc----CCCeEE
Q 005740 534 G-CPKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD-----------DLLSGGQKQRIAIARAILR----DPAILL 595 (680)
Q Consensus 534 g-~~~~~s~eei~~A~~~a~l~dfI~~--LP~G~dT~vge-----------~~LSGGQrQRIaIARAll~----~p~ILI 595 (680)
. +....+.+++.+.++..+++.+... +|+|-=+.+.+ ..||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1234778888899999988532111 22332222211 3699999999999999986 489999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 596 LDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
|||||++||+++...+.+.|.++.+ +|.|+|+|||+.+.++.||+|++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998753 37899999999999999999999974
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.6e-22 Score=201.67 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=120.8
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe---eCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~---di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
++++++++.+| ..+|+||+|||||||+..|.-......+ ....|. ++-... .-...|.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----
Confidence 46777888777 7799999999999999998743332221 001122 111111 12456888888876665
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH----ccCCCeEEEeCCCCCCCH
Q 005740 530 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDS 605 (680)
Q Consensus 530 NI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~ 605 (680)
| + .++.+ .+.+.+++.. .+-.++.+ .+||||||||++||||+ +.+|+++||||||++||.
T Consensus 83 ~-----~--~~~~~------~~~~~~~l~~-~~~~~~~~--~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 83 N-----P--LCVLS------QDMARSFLTS-NKAAVRDV--KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred C-----c--CCHHH------HHHHHHHhcc-ccccCCcc--cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 2 1 11111 1233344443 22223332 37999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCE
Q 005740 606 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 651 (680)
Q Consensus 606 ~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~ 651 (680)
.+...+.+.|.+..++...++|+|+++|++..+.++|+|-||..|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999887432012468999999999999999999998754
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.8e-22 Score=214.59 Aligned_cols=212 Identities=23% Similarity=0.331 Sum_probs=172.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..+++.+|+|.|+..+ .+.+++++++++.-+++++||++|+||||++|++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 4699999999997532 2799999999999999999999999999999999999999999998876 678
Q ss_pred EEEEccCCcCc-cccHHHHHh-cCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLL-QMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~-~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
|+|-.|.-.=| +-.+.+=-. ....|..++||+++.|...|++.-+..-|- ..||||||=|+++|-+.+.+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si--------~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI--------ASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccc--------cccCCcchhHHHHHHHhcCC
Confidence 89988865533 333221111 111245689999999999887665543221 36999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEE-ecChHHHhhcCcHH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHAELLHKGRLY 668 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive-~Gth~eLl~~~g~Y 668 (680)
|.+|||||||..||.++-..+-++|++. + --||+|+|..+.+.. |+.+.|.++|+|.. .|+- ..|
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~Al~~F-----~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~-------~~y 567 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAKALKNF-----N-GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI-------DKY 567 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHHHHHhc-----C-CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH-------HHH
Confidence 9999999999999999999999999886 2 379999999999987 99999999999975 2322 247
Q ss_pred HHHHHHhhh
Q 005740 669 AKLVKRQTE 677 (680)
Q Consensus 669 ~~L~~~q~~ 677 (680)
+++...|..
T Consensus 568 Kkl~~~e~~ 576 (582)
T KOG0062|consen 568 KKLLGAELR 576 (582)
T ss_pred HHHHHHHHh
Confidence 777776654
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=6.2e-22 Score=214.00 Aligned_cols=218 Identities=22% Similarity=0.361 Sum_probs=147.7
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
...|.++|++++|++ .++++|..|++.+|+++||+|++||||||+++.+.+-..|..=++-+==. -+++....+..
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQA 148 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHHH
Confidence 457999999999975 46999999999999999999999999999999999998885544322100 01111111110
Q ss_pred cEEEEccCCcCccccH-------HHHHhcCCCCCCC---HHHHHHHHHHhcHHHHHHc----C-CCCcccccCC---CCC
Q 005740 512 KIGFVGQEPQLLQMDI-------KSNIMYGCPKDVK---NEDIEWAAKQAYVHEFILS----L-PCGYETLVDD---DLL 573 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI-------~eNI~~g~~~~~s---~eei~~A~~~a~l~dfI~~----L-P~G~dT~vge---~~L 573 (680)
+ |..+.+..+- .|++.-.+ ++.. -+++++-+...+.+.|=.+ | ..|+....-. ..|
T Consensus 149 -v----~~v~~~~~~e~~rle~~~E~l~~~~-d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 149 -V----QAVVMETDHERKRLEYLAEDLAQAC-DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred -H----HHHhhhhHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 0 1111111111 12222221 1111 1122222222222222110 0 1133322222 289
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCe-EEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 574 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~-TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
|||||-|+|+||||+.+|++|+|||||.+||.++-.-+.+-|.+. ++ |+++++|--.++-. |.+|+-|++++
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~------d~~~lVi~sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY------DRIILVIVSHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc------cCceEEEEecchhhhhhHhhhhheecccc
Confidence 999999999999999999999999999999999999888888775 35 89999999999977 99999999999
Q ss_pred -EEEecChHHHhhcC
Q 005740 652 -IIEVGNHAELLHKG 665 (680)
Q Consensus 652 -Ive~Gth~eLl~~~ 665 (680)
+.-+|++++.+...
T Consensus 297 l~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 297 LIYYEGNYDQYVKTR 311 (614)
T ss_pred eeeecCCHHHHhhHH
Confidence 67899999988653
No 393
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.87 E-value=1.6e-22 Score=207.55 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=142.4
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc--eEEECCeeCCCCCHHHhhccE--EEEccCCcCccccHHHHHhc
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKI--GFVGQEPQLLQMDIKSNIMY 533 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~~~~~~~LR~~I--~~V~Qd~~LF~gTI~eNI~~ 533 (680)
+.+.+||+++|+|++|+|||||++.+.+..+...+ .+.+-...-+..+..++.+.+ .+|-.+ ++.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~---~~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST---FDEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec---CCCCHHHHHHH
Confidence 57889999999999999999999999999987644 333332222335666666665 111111 01111111111
Q ss_pred CCCCCCCHHHHHHHHH---Hhc-----HHHHHHcCCCCcccccCC--CCCChHH--------HHHHHHHHHHccCCCeEE
Q 005740 534 GCPKDVKNEDIEWAAK---QAY-----VHEFILSLPCGYETLVDD--DLLSGGQ--------KQRIAIARAILRDPAILL 595 (680)
Q Consensus 534 g~~~~~s~eei~~A~~---~a~-----l~dfI~~LP~G~dT~vge--~~LSGGQ--------rQRIaIARAll~~p~ILI 595 (680)
. ..+.+.++ ..| +-|-+.++|++|++.+|+ ..+|||| |||+++||+++++++|.+
T Consensus 88 ~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 88 A-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred H-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0 01111111 111 124578899999999987 3899999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHH
Q 005740 596 LDEATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 674 (680)
Q Consensus 596 LDEaTSaLD~~tE~~-I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~ 674 (680)
| ||+++|+.+|.. ++ +++++ ..++|.|+++||+++..++|.|.||+.|++ |++|+..++.|+.+++.
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~---~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~ 228 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFK---GTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLL 228 (249)
T ss_pred e--eeheecCCCcccchH--HHHHh---cCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHH
Confidence 9 999999887765 54 55553 146899999999999999999999999998 89999999999988765
Q ss_pred h
Q 005740 675 Q 675 (680)
Q Consensus 675 q 675 (680)
+
T Consensus 229 r 229 (249)
T cd01128 229 R 229 (249)
T ss_pred H
Confidence 4
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.2e-21 Score=205.66 Aligned_cols=197 Identities=27% Similarity=0.429 Sum_probs=147.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-+-+.||+|.||+. +|.+++++|-|.--.+||||||+|.|||||++||.|-.+|++|+.+=+- |=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 46789999999973 5899999999999999999999999999999999999999999876543 4468
Q ss_pred EEEccCCc--C-ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 514 GFVGQEPQ--L-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~~V~Qd~~--L-F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
|+--|+.- | -..|-.|-+.-+ .+...++.+.++-..|+..- -+| |--..||||||-|+|+|---++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sH-------AHT-ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASH-------AHT-IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhc-------cce-EeeeecCCcchHHHHHHHHhcCC
Confidence 88877642 1 122444444322 24455555555544443221 011 11137999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcC-EEEEEeCCEEEE-ecChH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIE-VGNHA 659 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD-~I~vl~~G~Ive-~Gth~ 659 (680)
|+||||||||.+||.++-..+-++|+.. +-.||+|+|.-..|...| ..+|+++-.|-| .|.++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney------~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEY------NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhc------cCcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 9999999999999999999999999886 248999999877776544 456777766654 34444
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=3.2e-21 Score=188.99 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=79.2
Q ss_pred HHcCCCCcccccCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEe
Q 005740 557 ILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 632 (680)
Q Consensus 557 I~~LP~G~dT~vge~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIa 632 (680)
+.-+|+|-.|++ ||||||||++||||+. .+|+++||||||++||+.+.+.+.+.+.++.+ +|+|+|+|+
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiS 155 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVIT 155 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEE
Confidence 667899988888 9999999999999984 79999999999999999999999999998753 368999999
Q ss_pred cCcchHhhcCEEEEEeC
Q 005740 633 HRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 633 HRlsti~~aD~I~vl~~ 649 (680)
|+++.++.||+++++++
T Consensus 156 H~~~~~~~adrvi~i~~ 172 (178)
T cd03239 156 LKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHhhCCeEEEEEE
Confidence 99999999999999986
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=199.74 Aligned_cols=183 Identities=28% Similarity=0.430 Sum_probs=139.5
Q ss_pred EEEEEcCCCCCCCcccceeEEeeC-----CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 439 NISFHYPSRPTVPILNHVCLTIEA-----NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 439 nVsF~Y~~~~~~~VL~~isl~I~~-----Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
+--++|++- ...+.++.|++.+ ||.++++||+|-||||++++|+|-.+|++|+ ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 344566642 2456677777665 6789999999999999999999999999998 2222 58
Q ss_pred EEEccCCc-CccccHHHHHhcCCCCC-CCHHHH-HHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 514 GFVGQEPQ-LLQMDIKSNIMYGCPKD-VKNEDI-EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~~V~Qd~~-LF~gTI~eNI~~g~~~~-~s~eei-~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
+|=||-.. =|+|||++=+.-.. ++ ..+.-. .+.++--++++.+++ .| ..|||||.||+|||-||.|+
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~-~~~~~~s~~~~ei~~pl~l~~i~e~-------~v--~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAI-RSAFGSSYFKTEIVKPLNLEDLLER-------PV--DELSGGELQRVAIAAALSRE 473 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhh-hhhcccchhHHhhcCccchHHHHhc-------cc--ccCCchhHHHHHHHHHhccc
Confidence 88898433 48999988775432 22 111111 123333344333322 12 26999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 649 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~ 649 (680)
+++.+||||++.||.+..-.+-++|++...+ .++|.++|-|.+..+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN--NEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhh--cCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999999998864 67999999999999876 999999974
No 397
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=7.5e-21 Score=183.48 Aligned_cols=209 Identities=25% Similarity=0.357 Sum_probs=168.6
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC----CCCceEEECCeeCCCCCHHHhhcc----EEEEccCCc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRWLREK----IGFVGQEPQ 521 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~----p~~G~I~idG~di~~~~~~~LR~~----I~~V~Qd~~ 521 (680)
..+.+++|+++..||.-++||+||||||-++|.++|..+ .+.-+-.+|++|+-++++..-|+- |++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 458999999999999999999999999999999999875 467788899999999999998875 568999997
Q ss_pred Cc---ccc----HHHHHhcCCC-------CCCCHHHHHHHHHHhcHHHH--H-HcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 522 LL---QMD----IKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEF--I-LSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 522 LF---~gT----I~eNI~~g~~-------~~~s~eei~~A~~~a~l~df--I-~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
-. +.+ +-+||-...- ..-...+.++.+.++|+.|- | .+-|. .|--||-|++.||
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~---------ElTeGE~QKVMIA 170 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY---------ELTEGECQKVMIA 170 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc---------hhccCcceeeeee
Confidence 43 222 4456532100 01123455666777777542 3 23332 4677889999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
-|+..+|++||-||||.++|+.|..+|.+.|.++.+. .|.|+++|+|.+.++.. ||+|-||-=|+-+|.+.-++|++
T Consensus 171 ~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999988654 68899999999999876 99999999999999999999998
Q ss_pred c-CcHHH
Q 005740 664 K-GRLYA 669 (680)
Q Consensus 664 ~-~g~Y~ 669 (680)
. +-.|.
T Consensus 249 ~PhHPYT 255 (330)
T COG4170 249 MPHHPYT 255 (330)
T ss_pred CCCCchH
Confidence 5 34454
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-21 Score=209.72 Aligned_cols=204 Identities=23% Similarity=0.286 Sum_probs=144.9
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
..+|..+|.+.+|.+ +..|++-++++..|.++++||++|+|||||++.|.+ |+|.+=. +. +++|-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~--ve----qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH--VE----QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC--ch----hheec
Confidence 457999999999975 369999999999999999999999999999999998 4433222 21 01111
Q ss_pred cEEEEccCCcCccccHHHHHhcCCC---CCCCHHHHHH-HHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCP---KDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~---~~~s~eei~~-A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
---...|+ .|=++|-+.-+..-.+ ...+.+||.. +++-.|..+-....|- +.||||=|=|+|+|||+
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARAL 213 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHH
Confidence 11111111 1223333333322100 0113355555 5555555554444443 37999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE-EecChHHHhhcC
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKG 665 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl~~~ 665 (680)
+++|+||+|||||..||..+-.-+.+-|... +.|+|+|+|.-+.+-. |.-|+.+++-|+- -.|++++..+++
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 9999999999999999999988888888765 3799999999888866 8888888887764 568888777654
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=3.5e-20 Score=218.22 Aligned_cols=203 Identities=23% Similarity=0.409 Sum_probs=172.0
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC---CCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 525 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p---~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~g 525 (680)
.++|+|+|.-++||+.+-+.||.|||||||++.|.|-.+- ..|+|..||.|.++... ++.++|.+|+-..| .-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999998764 35699999999999887 88999999987777 67
Q ss_pred cHHHHHhcCCC---C-----CCCHHHHHHHHHHhcHHHH---HHcCCCCcccccCC---CCCChHHHHHHHHHHHHccCC
Q 005740 526 DIKSNIMYGCP---K-----DVKNEDIEWAAKQAYVHEF---ILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 526 TI~eNI~~g~~---~-----~~s~eei~~A~~~a~l~df---I~~LP~G~dT~vge---~~LSGGQrQRIaIARAll~~p 591 (680)
|+||-|.|... + +.+++|-.+ ...|. |-.|....||.||+ +..|||||.|+++|-+++.+|
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~-----~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~ 279 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLA-----AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPA 279 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHH-----HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCc
Confidence 99999988531 1 233333222 13333 34678899999998 489999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc--chHhhcCEEEEEeCCEEEEecChHHHh
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--STIKAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl--sti~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
+++.+||+|-+||+.|.-+|.++|+++.+- -+.|.++.=|.. .+..-.|+|.+|.+|+++-+|+.++.+
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~--~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHI--TGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhh--hcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999999999998653 467887777765 567889999999999999999999887
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.4e-20 Score=191.92 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHHcc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.|||||+||+++||+++. +|++++|||||++||+++.+.+.+.+.++. +++|+|+|||+++....||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHHHHhcCcEEEE
Confidence 599999999999997654 999999999999999999999999998874 368999999999999999999999
Q ss_pred eCCEE
Q 005740 648 DDGRI 652 (680)
Q Consensus 648 ~~G~I 652 (680)
++|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 98743
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.81 E-value=7.4e-20 Score=182.89 Aligned_cols=146 Identities=17% Similarity=0.124 Sum_probs=110.0
Q ss_pred ccceeEEeeCCc-EEEEeCCCCCcHHHHHHHHh--------cCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc
Q 005740 453 LNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 523 (680)
Q Consensus 453 L~~isl~I~~Ge-~vAIVG~SGsGKSTL~~LL~--------r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF 523 (680)
..++||++++|+ +++|+||+|||||||++.+. |++-|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6666642211 2344444311
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC
Q 005740 524 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 603 (680)
Q Consensus 524 ~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 603 (680)
.++ . ++ .+ .+++ ..+|+|+|||..|++++ .+|+++++||||+++
T Consensus 78 --------~lg-~----~~-------------~l---~~~~------s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 78 --------DIG-D----EQ-------------SI---EQSL------STFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred --------ecC-c----hh-------------hh---hcCc------chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 111 0 00 00 0111 36899999999999984 899999999999999
Q ss_pred CHHHHHHHHH-HHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEec
Q 005740 604 DSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 604 D~~tE~~I~~-~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~G 656 (680)
|+++...+.. .++.+.+ .++|+|++||.....+.||++++|++|++...+
T Consensus 122 D~~~~~~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 122 DPVEGAALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CHHHHHHHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999888854 5666643 378999999998778889999999999998663
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.4e-19 Score=182.41 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=116.2
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc------cEEEEccCCcCcccc-
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE------KIGFVGQEPQLLQMD- 526 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~------~I~~V~Qd~~LF~gT- 526 (680)
+++.+++.+| ..+|+|++|||||||+..|.-..-...... + +.-..+++.+ .|-+..+.. +..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4555655544 568999999999999998755442111100 0 1111122211 111111110 001
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccC-CCCCChHHHHHHHHHHH----HccCCCeEEEeCCCC
Q 005740 527 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARA----ILRDPAILLLDEATS 601 (680)
Q Consensus 527 I~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vg-e~~LSGGQrQRIaIARA----ll~~p~ILILDEaTS 601 (680)
..+|+.+- .+.+.+.++++.... |.+.++|.+.+..-- ...||||||||+++|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23343321 356777778777666 666778877653311 14899999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCC-eEEEEEecCcchH-hhcC--EEEEEeCCE
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTI-KAVD--RIVVIDDGR 651 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~-~TvIvIaHRlsti-~~aD--~I~vl~~G~ 651 (680)
+||+.+.+.+.+.+.+..++ .+ .|+|+|||++..+ ..|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~--~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK--EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc--CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999887531 13 5899999998554 3455 788888876
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.1e-18 Score=196.47 Aligned_cols=116 Identities=32% Similarity=0.503 Sum_probs=99.0
Q ss_pred cHHHHHHcCCC---Ccccc---------cCC--CCCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHH
Q 005740 552 YVHEFILSLPC---GYETL---------VDD--DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGV 614 (680)
Q Consensus 552 ~l~dfI~~LP~---G~dT~---------vge--~~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~ 614 (680)
.+++|.+..|. .++|. +|. ..|||||.|||=||.-|.|+. -+.||||||-+|-.+--+++++.
T Consensus 788 EA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~V 867 (935)
T COG0178 788 EALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEV 867 (935)
T ss_pred HHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 34566666662 34443 344 389999999999999999998 89999999999999999999999
Q ss_pred HHHHhccCCCCeEEEEEecCcchHhhcCEEEEE------eCCEEEEecChHHHhhcCcHHHH
Q 005740 615 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAK 670 (680)
Q Consensus 615 l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~g~Y~~ 670 (680)
|.++.. +|.|||+|-|.|..|+.||.|+=| +.|+|+.+||++|+.+..+.|-.
T Consensus 868 L~rLvd---~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg 926 (935)
T COG0178 868 LHRLVD---KGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTG 926 (935)
T ss_pred HHHHHh---CCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhH
Confidence 999975 489999999999999999999998 47999999999999987666644
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=4.3e-19 Score=186.23 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=152.2
Q ss_pred cccccEEEEEEEEEcCCC-----------------------CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 430 RLMGHVQFVNISFHYPSR-----------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 430 ~~~g~I~f~nVsF~Y~~~-----------------------~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
...+.+.|+||+-.|.+. -+..+|+|+||+|+||+.++|||+|||||||++++++|+
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 345668888888766421 023689999999999999999999999999999999986
Q ss_pred --------CCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCH-HHHHHHHHHhcHHHHH
Q 005740 487 --------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFI 557 (680)
Q Consensus 487 --------y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~-eei~~A~~~a~l~dfI 557 (680)
|.|++|.|.+--..++.+-+.+ -||.+=.-||.|-+.= +..| .--.+.++.+|+.|-+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~~a~iPge---------~Ep~f~~~tilehl~s----~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTVSALIPGE---------YEPEFGEVTILEHLRS----KTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccchhhccCcc---------cccccCchhHHHHHhh----ccCchhHHHHHHHhhccchhh
Confidence 7899999977432222211111 1444334577777641 2222 2345677788877754
Q ss_pred HcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 558 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 558 ~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
.- -... +.||-|||-|..||+++-..|.+++.||.-|.||+.|...|.+.|.++.+. .+-|.++||||...
T Consensus 500 ly-----Rr~f--~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv 570 (593)
T COG2401 500 LY-----RRKF--SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE--AGITLIVVTHRPEV 570 (593)
T ss_pred hh-----hccH--hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHH
Confidence 31 1111 369999999999999999999999999999999999999999999998754 57899999999999
Q ss_pred Hhh--cCEEEEEeCCEEE
Q 005740 638 IKA--VDRIVVIDDGRII 653 (680)
Q Consensus 638 i~~--aD~I~vl~~G~Iv 653 (680)
+.. =|+++.+.=|++.
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 876 5999888777654
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=3.6e-18 Score=210.90 Aligned_cols=211 Identities=22% Similarity=0.298 Sum_probs=144.5
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh------cC---CCCCCceEEECCeeCCCCC----------HHHhhcc
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL------RL---YEPSDGQIYIDGFPLTDLD----------IRWLREK 512 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~------r~---y~p~~G~I~idG~di~~~~----------~~~LR~~ 512 (680)
=||||+++||-|..++|.|-||||||||++=.+ .+ .+.-+--|.||-.||..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 499999999999999999999999999997433 11 1333445888887775433 2445555
Q ss_pred EEEEcc------CCcCcccc--------------HHHHHhcC------C------------------CCCCC---HHHHH
Q 005740 513 IGFVGQ------EPQLLQMD--------------IKSNIMYG------C------------------PKDVK---NEDIE 545 (680)
Q Consensus 513 I~~V~Q------d~~LF~gT--------------I~eNI~~g------~------------------~~~~s---~eei~ 545 (680)
++=.|+ .+-.|+-. |+=++.|- | ..++. +-.|.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 543222 11222111 11111111 0 00000 00122
Q ss_pred HHHHHh-------cHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHH
Q 005740 546 WAAKQA-------YVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKG 613 (680)
Q Consensus 546 ~A~~~a-------~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~ 613 (680)
+|++.- ..-+.+.++--||=+ +|. ..|||||.|||-||..|.++ +.++||||||.+|++..-+++.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 222211 111223333334432 465 38999999999999999986 78999999999999999999999
Q ss_pred HHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE------eCCEEEEecChHHHhhcCc
Q 005740 614 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 614 ~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~g 666 (680)
.|+++.. .|.|+|+|.|++..++.||.|+-| +.|+|+.+||++|+.+...
T Consensus 1744 ~l~~L~~---~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1744 QLRTLVS---LGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred HHHHHHh---cCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 9999874 589999999999999999999999 4799999999999998653
No 406
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.78 E-value=2.7e-18 Score=165.60 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=152.4
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC-CC-----
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LD----- 505 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-~~----- 505 (680)
+..|++.|..|+|+.. .|+.-|+|+++|+|.+.-+||.+|||||||+|+|.|---.-.|.|.++|.+--. -.
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4579999999999864 389999999999999999999999999999999999998888999999976422 11
Q ss_pred -----HHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHH--cCCCCcccccCC--CCCChH
Q 005740 506 -----IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDD--DLLSGG 576 (680)
Q Consensus 506 -----~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~--~LP~G~dT~vge--~~LSGG 576 (680)
-.+|++..++--.-|.--+-+. |-+.+| ++-++|-. .|-+=+|-.+-= ..+|-|
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sa-e~mifg----------------V~g~dp~Rre~LI~iLDIdl~WRmHkvSDG 151 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFG----------------VGGDDPERREKLIDILDIDLRWRMHKVSDG 151 (291)
T ss_pred ceeEecccccccccccccccccccccH-HHHHhh----------------ccCCChhHhhhhhhheeccceEEEeecccc
Confidence 1233333333221111111121 222222 11112210 111112222221 279999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEe
Q 005740 577 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 655 (680)
Q Consensus 577 QrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~ 655 (680)
||.|+-|+--||+.=++|+|||-|--||......+.+.+++-.++ +|+|++.-||=..-++. +.+++.|.+|+|+..
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~--RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ--RGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh--cCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 999999999999999999999999999999999999999887653 78999999999988776 899999999999984
Q ss_pred cChH
Q 005740 656 GNHA 659 (680)
Q Consensus 656 Gth~ 659 (680)
-.++
T Consensus 230 l~~~ 233 (291)
T KOG2355|consen 230 LKYQ 233 (291)
T ss_pred cccc
Confidence 4443
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=4.5e-18 Score=164.35 Aligned_cols=136 Identities=25% Similarity=0.275 Sum_probs=101.3
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE-EEccCCcCccccHHHHHhcCC
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGC 535 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~-~V~Qd~~LF~gTI~eNI~~g~ 535 (680)
++.+.+|..+.|+||+||||||+++.+.-..-..+|.+.-. .+. +.+ .++++..-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc----------cCCCcceeeEEEE------------
Confidence 44455567999999999999999999765555555554441 000 111 122221111
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc----CCCeEEEeCCCCCCCHHHHHHH
Q 005740 536 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYV 611 (680)
Q Consensus 536 ~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I 611 (680)
| -+ ..+||+||+||+++||++.+ +|++++||||++++|++....+
T Consensus 72 ---------------------i-------~~---~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 ---------------------I-------FT---RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred ---------------------e-------hh---eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 00 01299999999999999987 7899999999999999999999
Q ss_pred HHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 612 ~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
.+.+.+..+ +++|+|++||++.....+|+++.|+.
T Consensus 121 ~~~l~~~~~---~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLV---KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHh---cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999988753 26899999999999999999999975
No 408
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.74 E-value=2.1e-18 Score=153.23 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=72.8
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
.++|++++|++++||.++|+||||||||||++++. +|+|.++|.|+..++.++.++.+++++|+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999987 89999999999999999999999999999 99999999
Q ss_pred HHhc
Q 005740 530 NIMY 533 (680)
Q Consensus 530 NI~~ 533 (680)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=5.6e-18 Score=171.90 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=112.8
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE-EEccCCcCccccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~-~V~Qd~~LF~gTI~ 528 (680)
..|.+|+++++++|+.++|+|||||||||+++.+.- -.+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 468999999999999999999999999999999981 24455666 7777642211 11
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH--ccCCCeEEEeCC---CCCC
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSAL 603 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl--l~~p~ILILDEa---TSaL 603 (680)
|+| ....++.|.+ ..++|.|++|+..+|+++ +.+|+++||||| |+++
T Consensus 74 ~~i----------------l~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI----------------LARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee----------------Eeeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 111 1111111111 246899999999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
|........ ++.+.+ ..++|+|++||.....+.||++..+++|++...++
T Consensus 126 D~~~~~~~i--l~~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAI--AEYIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHH--HHHHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 998765332 233322 13689999999756666799999999999987664
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.1e-16 Score=167.47 Aligned_cols=189 Identities=19% Similarity=0.269 Sum_probs=121.0
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-----------------------------------------CCC
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----------------------------------------PSD 491 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-----------------------------------------p~~ 491 (680)
+++.++++.+| ..+|+|||||||||++..|.-+.. ...
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 45667777776 588999999999999877643221 112
Q ss_pred ceEEECCeeCCC-CCHHHhhccEEEEccCCcCccccHHHHHhcCC----CCCCCH----HHHHHHHHHhcHHHHHHcCCC
Q 005740 492 GQIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPC 562 (680)
Q Consensus 492 G~I~idG~di~~-~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~----~~~~s~----eei~~A~~~a~l~dfI~~LP~ 562 (680)
..+++||..++. -+...+-..|.+.|++..|+.++-.+-..|-+ .-+..- ++..++.+.-+ + +.+-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~--~-~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRN--A-LLKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--H-HhCCCC
Confidence 256688887765 22334455577778888888665433333321 001111 12222222211 1 111355
Q ss_pred Cccccc--CC----CCCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeE
Q 005740 563 GYETLV--DD----DLLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 627 (680)
Q Consensus 563 G~dT~v--ge----~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~T 627 (680)
.-|..+ .+ ..+|+||||+++|||++. ++|++++|||||++||+...+.+.+.+.+. + .
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q 240 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-Q 240 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-C
Confidence 444433 33 258999999999999974 899999999999999999999998888764 2 4
Q ss_pred EEEEecCcchHhh-c---CEEEEEeCCEE
Q 005740 628 VIVIAHRLSTIKA-V---DRIVVIDDGRI 652 (680)
Q Consensus 628 vIvIaHRlsti~~-a---D~I~vl~~G~I 652 (680)
+++++|....+.+ | ++|+.+++|+|
T Consensus 241 ~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 241 TFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEeCCchhccchhccCccEEEEeCcEE
Confidence 4555555444433 4 78999999996
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=1.3e-16 Score=189.87 Aligned_cols=91 Identities=33% Similarity=0.502 Sum_probs=85.7
Q ss_pred CCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE-
Q 005740 571 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 647 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl- 647 (680)
..|||||||||+|||||..+| ++|||||||++||++..+.+.+.|+++.+ +|+|+|+|+|++..+..||+|++|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVeH~~~~i~~aD~vi~Lg 564 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVEHDEDTIRAADYIVDIG 564 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEec
Confidence 389999999999999999997 99999999999999999999999999864 478999999999999999999999
Q ss_pred -----eCCEEEEecChHHHhhc
Q 005740 648 -----DDGRIIEVGNHAELLHK 664 (680)
Q Consensus 648 -----~~G~Ive~Gth~eLl~~ 664 (680)
++|+|+.+|+.+++++.
T Consensus 565 pgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 565 PGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cccCCCCCEEeeccCHHHHhcC
Confidence 99999999999999764
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.4e-16 Score=189.11 Aligned_cols=91 Identities=33% Similarity=0.507 Sum_probs=85.4
Q ss_pred CCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE-
Q 005740 571 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 647 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl- 647 (680)
..|||||+||++|||||..+| ++|||||||++||+++.+.+.+.|+++.+ +|+|+|+|+|+++.++.||+|++|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHhhCCEEEEec
Confidence 489999999999999999986 89999999999999999999999999864 489999999999999999999999
Q ss_pred -----eCCEEEEecChHHHhhc
Q 005740 648 -----DDGRIIEVGNHAELLHK 664 (680)
Q Consensus 648 -----~~G~Ive~Gth~eLl~~ 664 (680)
++|+|+++|+.+++...
T Consensus 563 pgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 563 PGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ccccCCCCEEeeccCHHHHhcC
Confidence 99999999999998653
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.68 E-value=8.4e-17 Score=171.14 Aligned_cols=187 Identities=27% Similarity=0.379 Sum_probs=128.1
Q ss_pred EEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC-------------eeCCCCC
Q 005740 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-------------FPLTDLD 505 (680)
Q Consensus 439 nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG-------------~di~~~~ 505 (680)
++.-+|..+ .-.|.++- ..++|+.+||+|++|-||||.+++|.|-..|+=|+- |+ ..+.++=
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 567788532 22344333 256899999999999999999999999999998753 22 1111110
Q ss_pred HHHhhc------cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHH
Q 005740 506 IRWLRE------KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 577 (680)
Q Consensus 506 ~~~LR~------~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQ 577 (680)
.+-.-. ++-||--=|-.+.|+++|=+.-- -+.-..+|.++.| +++-.+.- ..|||||
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~-------------de~g~~devve~l--~L~nvl~r~v~~LSGGE 218 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV-------------DERGKFDEVVERL--GLENVLDRDVSELSGGE 218 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhh-------------hhcCcHHHHHHHh--cchhhhhhhhhhcCchH
Confidence 000000 11222223445556655554321 1112344445544 34444443 3799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 648 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~ 648 (680)
-||+|||-|++|+++++++|||||-||....-..-+.++++.+ .+++||+|-|.|+.+.. +|-|-++=
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~---~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc---cCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999998888889999864 27999999999999876 88887774
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.68 E-value=4.3e-17 Score=162.68 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=100.4
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~ 528 (680)
++|++|++|+. |+.++|+|||||||||+++.|.+..- +..+|.++..- +++.|...+| +.|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46888887765 79999999999999999999976432 12366665331 2566755555 67999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
||+..|. ....+|..+ +.+.++.+. +++|+++|+||||+++|+.+.
T Consensus 78 d~l~~~~--s~~~~e~~~------~~~iL~~~~--------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGI--SYFYAELRR------LKEIVEKAK--------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hcccccc--ChHHHHHHH------HHHHHHhcc--------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9998873 222333222 222233221 179999999999999999988
Q ss_pred HHHHH-HHHHHhccCCCCeEEEEEecCcchHhhc---CEEEEE
Q 005740 609 HYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVI 647 (680)
Q Consensus 609 ~~I~~-~l~~l~~~~~~~~TvIvIaHRlsti~~a---D~I~vl 647 (680)
..+.. .++++.+ ++.|+|++||.+..+... ++|-.+
T Consensus 124 ~~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 77654 4666643 378999999999877654 444443
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=1.1e-16 Score=160.15 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=103.6
Q ss_pred eeEEeeCCcEEEEeCCCCCcHHHHHHHHhc-CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcC
Q 005740 456 VCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 534 (680)
Q Consensus 456 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g 534 (680)
.++++.+|++++|+||+||||||+++.+.+ .+.++.|...- ..+..+++..|....|. ..+++.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i~-- 86 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSIS-- 86 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccccc--
Confidence 355556899999999999999999999994 32222221100 01222333322211111 001100
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005740 535 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 614 (680)
Q Consensus 535 ~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 614 (680)
++ -+.+|++++| ++.+-+.+.+|+++||||||+++|+.....+...
T Consensus 87 ---------------------------~~------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 87 ---------------------------DG------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ---------------------------CC------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 01 1245666665 6666788899999999999999999887776554
Q ss_pred -HHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHH
Q 005740 615 -LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 615 -l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
++.+.+ .+.|+|++||+...++.||++..+++|++.+.++.+++
T Consensus 133 ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 455442 36899999999999999999999999999998875444
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2.1e-16 Score=197.22 Aligned_cols=137 Identities=20% Similarity=0.201 Sum_probs=113.4
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHH------HHHHHHHHccCCCeE
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQ------RIAIARAILRDPAIL 594 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQ------RIaIARAll~~p~IL 594 (680)
.|+||++|||++ + ++++++ +.|++.+++++|+..+|.| ||.++. +.||||||| |+|||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-R-SDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-C-CCCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 389999999999 4 588877 7999999999999999999 999987 599999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccC--CCCeEEEEEecCcchHh------hcCEEEEEeC----CEEEEecChHHHh
Q 005740 595 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIK------AVDRIVVIDD----GRIIEVGNHAELL 662 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~~~~--~~~~TvIvIaHRlsti~------~aD~I~vl~~----G~Ive~Gth~eLl 662 (680)
+|||||++||+.+...+.+.|.++.... ..|.|+|+|||++..+. .||..+.+.+ -.+++.-+|+-++
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSLG 1307 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCcccc
Confidence 9999999999999999999998864210 13679999999998876 4677776643 1234444555555
Q ss_pred h
Q 005740 663 H 663 (680)
Q Consensus 663 ~ 663 (680)
+
T Consensus 1308 ~ 1308 (1311)
T TIGR00606 1308 K 1308 (1311)
T ss_pred c
Confidence 4
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.63 E-value=1e-15 Score=159.06 Aligned_cols=142 Identities=21% Similarity=0.304 Sum_probs=105.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-HHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 542 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~e 542 (680)
+.++|+||+|||||||++.|.|++.|++|+|.+||.++..++ ..++...++++||+..--..++.||- + . .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-k---~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-K---A 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-H---H
Confidence 689999999999999999999999999999999999998775 57888889999996532223444431 1 1 0
Q ss_pred HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccC
Q 005740 543 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 622 (680)
Q Consensus 543 ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~ 622 (680)
.++ ..++|+. +|+++|+|||++ ++.+...++.+.
T Consensus 184 --------~~~---------------------------~~~i~~~--~P~villDE~~~------~e~~~~l~~~~~--- 217 (270)
T TIGR02858 184 --------EGM---------------------------MMLIRSM--SPDVIVVDEIGR------EEDVEALLEALH--- 217 (270)
T ss_pred --------HHH---------------------------HHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHHh---
Confidence 011 4556663 999999999974 233444444442
Q ss_pred CCCeEEEEEecCcch--H------------hhcCEEEEEeCCEEEEecChHHHh
Q 005740 623 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 623 ~~~~TvIvIaHRlst--i------------~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
.|.|+|+++|..+. + ..+||+++|++|+ ..|+.+++.
T Consensus 218 -~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 -AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred -CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 47899999997655 3 3489999999887 677776654
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.56 E-value=9.3e-14 Score=151.10 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--
Q 005740 572 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-- 640 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-- 640 (680)
.+|+||+|+++||+++. ++||||+||||+|.||+...+.+.+.+.++ ++++++.+|....+..
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL 346 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence 69999999999999884 899999999999999999999988877653 3588999998766544
Q ss_pred -cCEEEEEeCCEE
Q 005740 641 -VDRIVVIDDGRI 652 (680)
Q Consensus 641 -aD~I~vl~~G~I 652 (680)
+++++.+++|+|
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 568999999998
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=2.5e-14 Score=143.22 Aligned_cols=141 Identities=21% Similarity=0.224 Sum_probs=96.4
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE-EEccCCcCccccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~-~V~Qd~~LF~gTI~ 528 (680)
+.+.+|++|++++|+.++|+|||||||||+++.+.++. ++.++| +||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46999999999999999999999999999999998873 333333 222211 122444
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
|||... +..+-+-.-+.+++|+|+||+ +.+-++..+|++++||||++++|+..-
T Consensus 73 d~I~~~-------------------------~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSR-------------------------LSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEe-------------------------cCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 444211 111101111224789999976 455557889999999999999999764
Q ss_pred HHHH-HHHHHHhccCCCCeEEEEEecCcchHhhcC
Q 005740 609 HYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVD 642 (680)
Q Consensus 609 ~~I~-~~l~~l~~~~~~~~TvIvIaHRlsti~~aD 642 (680)
..+. +.++.+.+ .++++|++||..+.++.++
T Consensus 127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 127 FAISLAILECLIK---KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHh---cCCEEEEECChHHHHHHhh
Confidence 4443 34555543 3789999999998877644
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.52 E-value=2.3e-14 Score=144.90 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=101.2
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~ 528 (680)
..|.+|+++++++ +.++|+|||||||||+++.+.+..-. ++.-..++ .-+..++++.| +| +-++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--------~~~g~~vp--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--------AQIGSFVP--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--------hccCCeec--cccceecceee---EeccCCch
Confidence 3589999999987 99999999999999999999764311 11111111 11245666654 22 23444
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH----HHHHHHH--ccCCCeEEEeCC---
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR----IAIARAI--LRDPAILLLDEA--- 599 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR----IaIARAl--l~~p~ILILDEa--- 599 (680)
||+. +||.++ ..+++++ ..+|++++||||
T Consensus 84 ~~ls------------------------------------------~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 DDLA------------------------------------------GGRSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred hhhc------------------------------------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 4444 333332 2345544 469999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHH
Q 005740 600 TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 600 TSaLD~~tE-~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eL 661 (680)
|+++|...- ..+.+.+.+ ..++|+|++||.....+.+|++--+++|++...++-+++
T Consensus 122 t~~lD~~~~~~~il~~l~~-----~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSIAWAIVEYLHE-----KIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHHHHHHHHHHHh-----ccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999998652 333333432 136899999999887788998888899998877665555
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.47 E-value=2.1e-13 Score=138.18 Aligned_cols=170 Identities=24% Similarity=0.370 Sum_probs=99.1
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHH-hcCCC-CC-CceEEECCeeCCCC------CHHHhhccEEEEccCCcCc-
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLL-LRLYE-PS-DGQIYIDGFPLTDL------DIRWLREKIGFVGQEPQLL- 523 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL-~r~y~-p~-~G~I~idG~di~~~------~~~~LR~~I~~V~Qd~~LF- 523 (680)
++..+.+.| ..++|+||+||||||++..| .-|.. +. +.+ +...+++ ........|....++.--.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 455666654 59999999999999999999 45542 11 111 1111111 1122233344443332211
Q ss_pred ---cc--cHHHH--------HhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH----HH
Q 005740 524 ---QM--DIKSN--------IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA----RA 586 (680)
Q Consensus 524 ---~g--TI~eN--------I~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA----RA 586 (680)
.. .|... .... ...++.+++.+.+....++. ..||||||-+++|| ..
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in-~~~~~~~~~~~~l~~~~i~~---------------~~lSgGEk~~~~Lal~lA~~ 154 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKIN-GKKVRLKDLEELLPEVGISP---------------EFLSGGEKSLVALALLLALQ 154 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEET-TEEE-HHHHHHHHHCTTTTT---------------TGS-HHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccc---------------cccccccccccccccccccc
Confidence 00 01000 0111 11233444444443333221 27999999999987 33
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEe
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 648 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~ 648 (680)
-++++|++||||+.++||....+.+.+.|.+.. +++-+|++||+..+...||+.+.+.
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~----~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLADLLKELS----KQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT----TTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccc
Confidence 467899999999999999999999999999884 3578999999999999999998774
No 422
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=9.3e-13 Score=145.47 Aligned_cols=179 Identities=21% Similarity=0.245 Sum_probs=133.6
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC---CeeCCC-----CCHHHhhccEEEEccCCc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTD-----LDIRWLREKIGFVGQEPQ 521 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id---G~di~~-----~~~~~LR~~I~~V~Qd~~ 521 (680)
..+++++ |++++|++++|+|+||+|||||+++|+|+++|+.|.|.+. |.++.+ ++.+.+++.|.+|.+-
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-- 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-- 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC--
Confidence 4689999 9999999999999999999999999999999999999995 445553 4556688899999752
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCC-hHHHHH-HHHHHHHccCCCeEEEeCC
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS-GGQKQR-IAIARAILRDPAILLLDEA 599 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LS-GGQrQR-IaIARAll~~p~ILILDEa 599 (680)
.+..-+++..+.-..-+.|+... +|+|-.+==.+++ =-|-|| |+++ +..|| +
T Consensus 223 ---------------~~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl~---~ge~P------~ 276 (438)
T PRK07721 223 ---------------DQPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGLA---VGEPP------T 276 (438)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHHh---cCCCC------c
Confidence 12234555555555556677764 4888766322222 122222 2222 23443 5
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCCCe-----EEEEEecCcchHhhcCEEEEEeCCEEEEecChH
Q 005740 600 TSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 600 TSaLD~~tE~~I~~~l~~l~~~~~~~~-----TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~ 659 (680)
|+++|+..-..+.+.++++.+. .+|. ||++.+|+++. .-||++.++.+|+|+..|+-.
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 8999999999999999988532 2575 99999999996 789999999999999988754
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.5e-14 Score=149.11 Aligned_cols=194 Identities=21% Similarity=0.373 Sum_probs=133.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc--CCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
+|.++|.+.+-.+ +..+-|-||.|-.|.++++|||+|-|||||++-|.- |--|..=.+++
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLl--------------- 325 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLL--------------- 325 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEe---------------
Confidence 5778887777643 458889999999999999999999999999998863 23344333333
Q ss_pred cEEEEccCCcCccccHHHHHh---------------------cCCCCCCCHHH---HHHHHHHhcH-------HHHHHcC
Q 005740 512 KIGFVGQEPQLLQMDIKSNIM---------------------YGCPKDVKNED---IEWAAKQAYV-------HEFILSL 560 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~---------------------~g~~~~~s~ee---i~~A~~~a~l-------~dfI~~L 560 (680)
+.|+..-=+.|--+-+. -|. .--.|+ +.+-++..|+ ...+..|
T Consensus 326 ----CEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taaErl~~v~~ELraiGA~sAEarARRILAGL 399 (807)
T KOG0066|consen 326 ----CEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAAERLKEVADELRAIGADSAEARARRILAGL 399 (807)
T ss_pred ----eeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHhccccchhHHHHHHhhc
Confidence 33443333333222221 120 000112 2222222222 2223332
Q ss_pred CCCcccccCCC---CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 561 PCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 561 P~G~dT~vge~---~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
|++-..-++ .+|||=|-|+++||||+-.|-+|.|||||..||-..---+-+-|..+ .+|.++|+|.-+.
T Consensus 400 --GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgF 471 (807)
T KOG0066|consen 400 --GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGF 471 (807)
T ss_pred --CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccch
Confidence 666666663 89999999999999999999999999999999988766555566555 4899999999999
Q ss_pred Hhh-cCEEEEEeCCEEE-EecChH
Q 005740 638 IKA-VDRIVVIDDGRII-EVGNHA 659 (680)
Q Consensus 638 i~~-aD~I~vl~~G~Iv-e~Gth~ 659 (680)
+.+ |..|+.||+-++- ..|+|.
T Consensus 472 LD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 472 LDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHHHHHHHhhhhhhhhhhhcchHH
Confidence 987 9999999998874 456653
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.44 E-value=6.7e-13 Score=140.54 Aligned_cols=200 Identities=24% Similarity=0.412 Sum_probs=140.4
Q ss_pred EEcCCCCCCCcccceeEEeeCCc-----EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEE
Q 005740 442 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516 (680)
Q Consensus 442 F~Y~~~~~~~VL~~isl~I~~Ge-----~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V 516 (680)
++||+. +.-+-+..|.|+.|+ .+...|++|-||||++++++|..+|++|. ++-.+ +++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 678863 467889999999996 57889999999999999999999999762 33333 37777
Q ss_pred ccCCc-CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCe
Q 005740 517 GQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 593 (680)
Q Consensus 517 ~Qd~~-LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~I 593 (680)
||... =|.+|+|+=+. +.++.|-..-+....+.+ |-..+-.++. .+||||+.||+|||-+|=|.+++
T Consensus 408 pqkispK~~~tvR~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred ccccCccccchHHHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 77544 57788876542 122222221111111111 2222333333 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeC--CEEEEecChHHHhhcCcHH
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD--GRIIEVGNHAELLHKGRLY 668 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~--G~Ive~Gth~eLl~~~g~Y 668 (680)
.+.|||.+-||++.....-+.+++..- ..++|-.+|-|.+-... .|||++|.+. +...-.-.++.|++-...|
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~f 553 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRF 553 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHH
Confidence 999999999999988777777777542 24689999999987654 4999999984 3333344555665443333
No 425
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.43 E-value=1.3e-13 Score=158.97 Aligned_cols=103 Identities=26% Similarity=0.415 Sum_probs=85.2
Q ss_pred HHHHHHHhcHHHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHHc----------cCCCeEEEeCCC-CCCC
Q 005740 544 IEWAAKQAYVHEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SALD 604 (680)
Q Consensus 544 i~~A~~~a~l~dfI~~LP~G~dT~vge--------~~LSGGQrQRIaIARAll----------~~p~ILILDEaT-SaLD 604 (680)
+...++..+. ++...+|+++++.+++ ..||||||||++||||++ .+|++||||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 4444444442 4555678888888853 279999999999999887 599999999998 7899
Q ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC-CEE
Q 005740 605 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD-GRI 652 (680)
Q Consensus 605 ~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~-G~I 652 (680)
+.+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 512 ~~~~~~~~~~l~~~-----~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 512 AEGTKALLSILDSL-----KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhHHHHHHHHHHhC-----CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 99999999999886 26899999999999999999999986 554
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.41 E-value=7.1e-13 Score=133.75 Aligned_cols=144 Identities=24% Similarity=0.331 Sum_probs=89.4
Q ss_pred EEEEeCCCCCcHHHHH-HHHhcCCCC-----------------CCceEEECCeeCCCC-CHHHhhccEEEEccC-Cc--C
Q 005740 465 VVAIVGLSGSGKSTFV-NLLLRLYEP-----------------SDGQIYIDGFPLTDL-DIRWLREKIGFVGQE-PQ--L 522 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~-~LL~r~y~p-----------------~~G~I~idG~di~~~-~~~~LR~~I~~V~Qd-~~--L 522 (680)
+++|+|++|||||||+ +++.|.+++ +.|.+.+++.|+..- ....+|. +++.|. .+ .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~--~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD--GYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH--HHhccCCEEEEE
Confidence 6999999999999999 689998765 568899988887532 1222221 122221 11 2
Q ss_pred cccc-----------------HHHHHh---cCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCCh--HHHH
Q 005740 523 LQMD-----------------IKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSG--GQKQ 579 (680)
Q Consensus 523 F~gT-----------------I~eNI~---~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSG--GQrQ 579 (680)
|+.| ..+|+. .|++-|..+.++. .+.. ++.... +.. .-+ ...|| -|+|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~---~~~~~~--~~~--~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI---TFHRKK--NLQ--YYDISAKSNYNFEKP 159 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH---HHHHHc--CCE--EEEEeCCCCCCHHHH
Confidence 3333 112321 2322222121111 0111 122221 211 112 23333 4999
Q ss_pred HHHHHHHHccCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHh
Q 005740 580 RIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALR 619 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaT-----SaLD~~tE~~I~~~l~~l~ 619 (680)
++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999999998874
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.32 E-value=3.2e-12 Score=146.99 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=70.7
Q ss_pred CCChHHHHHHHHHHHHccC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~----p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.+||||+||++||||++.. |++|||||||++||+.+...+.+.|.++. +++|+|+|||++..+..||++++|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHHHHhcCeEEEE
Confidence 5899999999999999985 69999999999999999999999999884 468999999999999999999999
Q ss_pred eCCE
Q 005740 648 DDGR 651 (680)
Q Consensus 648 ~~G~ 651 (680)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9875
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=1.2e-11 Score=124.97 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=93.4
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc--CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc--cc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MD 526 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~--gT 526 (680)
.|=+|++++=..+.+++|+||+|+||||+++.+.. .. ++.|...... .-.+++..|...-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45566666422237899999999999999999983 23 5666654432 124777777532221 11
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q 005740 527 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606 (680)
Q Consensus 527 I~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 606 (680)
+.+++ ..| --+-||+++|+++..+|++++||||++++|+.
T Consensus 85 i~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 11111 112 24569999999999999999999999999997
Q ss_pred H-HHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcC
Q 005740 607 S-EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 642 (680)
Q Consensus 607 t-E~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD 642 (680)
. .......++++.+....+.++|++||.++.++...
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 5 44445566666431011358999999999887653
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.29 E-value=7.7e-12 Score=142.94 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHcc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.|+++. +++|+|+|||.+..+..||+.+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEE
Confidence 489999999999999996 689999999999999999999999999884 358999999999999999999999
Q ss_pred eCCE
Q 005740 648 DDGR 651 (680)
Q Consensus 648 ~~G~ 651 (680)
+++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 9854
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.28 E-value=1.2e-11 Score=146.01 Aligned_cols=147 Identities=21% Similarity=0.272 Sum_probs=99.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccc-----eeEEeeCC-cEEEEeCCCCCcHHHHHHHHhcC-CCCCCceEEECCeeCCCCC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNH-----VCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~-----isl~I~~G-e~vAIVG~SGsGKSTL~~LL~r~-y~p~~G~I~idG~di~~~~ 505 (680)
+.|.++|+.. |++++ +|+++.+| +.++|+||+|+||||+++.+.+. +-++.|
T Consensus 294 ~~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------- 352 (771)
T TIGR01069 294 GKIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------- 352 (771)
T ss_pred CCEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-------------
Confidence 3577777643 34443 78888887 89999999999999999999886 333333
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
.+||.+... .-.+.+++.. +..+++ -+. ++ -..+|+|++|+..|++
T Consensus 353 --------~~Vpa~~~~-~~~~~d~i~~----~i~~~~------------si~---~~------LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 353 --------IPIPANEHS-EIPYFEEIFA----DIGDEQ------------SIE---QN------LSTFSGHMKNISAILS 398 (771)
T ss_pred --------CCccCCccc-cccchhheee----ecChHh------------HHh---hh------hhHHHHHHHHHHHHHH
Confidence 144444310 0012233311 111110 010 11 1368999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHhccCCCCeEEEEEecCcchH
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~-~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
++ .+|+++|||||++++|+..-..+. ..++.+.+ .|+++|++||....-
T Consensus 399 ~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL~ 448 (771)
T TIGR01069 399 KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKELK 448 (771)
T ss_pred hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHH
Confidence 87 789999999999999999888884 44555542 478999999997653
No 431
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.27 E-value=2.4e-11 Score=131.07 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCccc-----------ceeEEeeCCcEEEEe
Q 005740 401 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIV 469 (680)
Q Consensus 401 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~-----------~isl~I~~Ge~vAIV 469 (680)
++..+.+|++++++.++.+.. .+....+.|+|+||+|.||+. +.+|+ |+++.|.+|++++||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 345678999999998765321 122346789999999999963 47997 999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCC
Q 005740 470 GLSGSGKSTFVNLLLRLYEPS 490 (680)
Q Consensus 470 G~SGsGKSTL~~LL~r~y~p~ 490 (680)
||+|||||||+++|.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999998754
No 432
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.21 E-value=2.1e-11 Score=120.41 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCCChHHHHHHHHHHHHcc--CCCeEEEeCCCCCCCHHHHHHHHHH-HHHHhccCCCCeEEEEEecCcchHhhcCE
Q 005740 571 DLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDR 643 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~--~p~ILILDEaTSaLD~~tE~~I~~~-l~~l~~~~~~~~TvIvIaHRlsti~~aD~ 643 (680)
+.+|+|++| +++++.. +|+++|+||||+++|+.....+... ++.+.+ ..++++|++||..+..+.||+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~--~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE--KIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHHHhhc
Confidence 367888887 4555555 9999999999999999977766544 455542 136899999999987777875
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.21 E-value=7.7e-11 Score=133.90 Aligned_cols=108 Identities=35% Similarity=0.518 Sum_probs=92.6
Q ss_pred HHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEE
Q 005740 555 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 631 (680)
Q Consensus 555 dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvI 631 (680)
+|+.+.--||=|.=-+ ..|||||.|||-||+.|-.+= =+.|||||+.+|-+.--.++.++|++++. .|.|+|+|
T Consensus 463 ~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVV 539 (935)
T COG0178 463 GFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVV 539 (935)
T ss_pred HHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEE
Confidence 4555555566665444 499999999999999998863 58899999999999877788899999975 48999999
Q ss_pred ecCcchHhhcCEEEEE------eCCEEEEecChHHHhhcC
Q 005740 632 AHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 632 aHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~ 665 (680)
-|...||+.||+|+=| ..|+|+.+||++|+|+++
T Consensus 540 EHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred ecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 9999999999999988 489999999999999876
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.19 E-value=4.3e-11 Score=127.63 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=105.6
Q ss_pred eeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC
Q 005740 456 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 535 (680)
Q Consensus 456 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~ 535 (680)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+.++ |..++.... ++.+.++.|.. + + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----~---~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----G---Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----C---C----C-
Confidence 557788999999999999999999999999999999999886 455555443 33444433210 0 0 0
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 005740 536 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 615 (680)
Q Consensus 536 ~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l 615 (680)
....+.+ =+++++|-.+|+++++||+.+ .+ +.+.+
T Consensus 202 ~~~~~~~--------------------------------------~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~l 236 (308)
T TIGR02788 202 LAKVTPK--------------------------------------DLLQSCLRMRPDRIILGELRG---DE----AFDFI 236 (308)
T ss_pred cCccCHH--------------------------------------HHHHHHhcCCCCeEEEeccCC---HH----HHHHH
Confidence 0112211 235567778999999999996 22 34455
Q ss_pred HHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 616 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 616 ~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
+.... .+.+++...|-.+.....||+..|..|++...|..++.+.
T Consensus 237 ~a~~~---g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 237 RAVNT---GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHhc---CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 55532 2456799999999988899999999999999999888773
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=99.19 E-value=2.4e-10 Score=123.88 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcC
Q 005740 572 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 642 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD 642 (680)
-+|+||++++++|+.|. .+|||++||||+|.||......+.+.|.+. ..+.|.-++ .-.-||
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~------~q~~it~t~---~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL------PQAIVAGTE---APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC------CcEEEEcCC---CCCCCc
Confidence 58999999999999998 899999999999999999998888777543 134444333 345699
Q ss_pred EEEEEeCCEEEEec
Q 005740 643 RIVVIDDGRIIEVG 656 (680)
Q Consensus 643 ~I~vl~~G~Ive~G 656 (680)
+++++++|++.-+.
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999986543
No 436
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=3.3e-10 Score=123.36 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHHcc---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh
Q 005740 572 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 639 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~---------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~ 639 (680)
.+|.||+++++||.+|.. +||||+||||+|.||+...+.+.+.|.+. |.++++++|.+..+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999998888643 469999999986553
No 437
>PRK13695 putative NTPase; Provisional
Probab=99.16 E-value=6.2e-11 Score=115.78 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCE
Q 005740 572 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 651 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~ 651 (680)
.+||+++-++.+++..+++|+++++||+. +++..+ ....+.+.++.+ .++++|+++|+-..-..+|+|.++.+|+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~-~~e~~~-~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIG-KMELKS-PKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCC-cchhhh-HHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 69999999999999999999999999952 333333 223445555442 3689999999966667899999999999
Q ss_pred EEEecChHHHhhcCcHHHHHH
Q 005740 652 IIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 652 Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
|.+. | .-+++..|.+..
T Consensus 153 i~~~-~---~~~r~~~~~~~~ 169 (174)
T PRK13695 153 VYEL-T---PENRDSLPFEIL 169 (174)
T ss_pred EEEE-c---chhhhhHHHHHH
Confidence 9886 2 223445555544
No 438
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.13 E-value=3e-11 Score=132.27 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=57.0
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc-eEEECCeeCCCCCHHHhhccEEEEccCC
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 520 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~di~~~~~~~LR~~I~~V~Qd~ 520 (680)
.||++||+++++||.++|+||||||||||++ .++.+|++| +|.+||+++...+..+++..= +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 788888888 799999999876655543221 888863
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.13 E-value=1.1e-09 Score=112.03 Aligned_cols=159 Identities=13% Similarity=0.244 Sum_probs=93.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHH-HHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL-~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
.|..++++..+++ .+++|+.+.|+|++||||||+ .+++.++.++.+..+++.. +.+.+++.++
T Consensus 7 ~~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~----e~~~~~~~~~ 70 (230)
T PRK08533 7 ELSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST----QLTTTEFIKQ 70 (230)
T ss_pred EEEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHH
Confidence 3566677665543 279999999999999999999 6999998875544444432 1122222222
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccC-CCCCChHHHHHHHHHHHHcc--
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILR-- 589 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vg-e~~LSGGQrQRIaIARAll~-- 589 (680)
+. .+| . +.. +++.. +.+. .+. ...+|+++.++-.++|.+-.
T Consensus 71 ~~-----------------~~g-~-~~~--------------~~~~~--~~l~-~~~~~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 71 MM-----------------SLG-Y-DIN--------------KKLIS--GKLL-YIPVYPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred HH-----------------HhC-C-chH--------------HHhhc--CcEE-EEEecccccChHHHHHHHHHHHHHHH
Confidence 10 122 0 111 11110 0000 000 01356776665555544333
Q ss_pred --CCCeEEEeCCCCCC----CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH--------hh-cCEEEEEe
Q 005740 590 --DPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA-VDRIVVID 648 (680)
Q Consensus 590 --~p~ILILDEaTSaL----D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti--------~~-aD~I~vl~ 648 (680)
+|+++++||||+.+ |+...+.+.+.++.+.+ .|+|+++ +|..... .. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 77767778888887753 3666655 4544332 22 68888887
No 440
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.09 E-value=1.9e-10 Score=122.15 Aligned_cols=170 Identities=24% Similarity=0.314 Sum_probs=110.5
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC------------C----CHHHhhcc--EEEEccCCcC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------------L----DIRWLREK--IGFVGQEPQL 522 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~------------~----~~~~LR~~--I~~V~Qd~~L 522 (680)
.||+..++||.+|-||||-++.|+|-.+|.-|.- -++-+-.+ + ..+.++.- .-||-|=|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999999987752 11111110 0 00111110 1122222333
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 523 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 523 F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
-.|++.+++.--. ..+...++++.-++..... -| ..||||+-||.|||-+-+.++++.++|||.|
T Consensus 177 ~k~~v~~~l~~~~----~r~~~~~~~~~~~L~~~~~----------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 177 VKGTVGSLLDRKD----ERDNKEEVCDQLDLNNLLD----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHh----hcccHHHHHHHHHHhhHHH----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 3344444432110 0111122222222211111 12 3799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEe
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 648 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~ 648 (680)
-||.....+--.+|+.+. ..++=+|+|-|.||.+.. .|-|..+-
T Consensus 243 YLDVKQRLkaA~~IRsl~---~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLI---NPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cchHHHhhhHHHHHHHhh---CCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999998888778888876 357899999999999865 77777764
No 441
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.08 E-value=4.5e-10 Score=113.89 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=85.0
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc-CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
+.|.+|+++++++|++++|.||+|+||||+++.+.+ -+.++.|.....- . -.+++..|= +.+-.-.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i--~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSV--LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceE--EEEecCc
Confidence 468999999999999999999999999999999999 7788888765432 1 123333221 0011111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
|++.-| .-|. ..+-+|++-.=.-..+|+++||||+.++.|+...
T Consensus 85 d~~~~~-----------------------------~StF-------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHG-----------------------------MSTF-------MVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccccc-----------------------------cchH-------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 222111 1000 1111222211112357999999998666655444
Q ss_pred HHH-HHHHHHHhccCCCCeEEEEEecCcchHhhc
Q 005740 609 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAV 641 (680)
Q Consensus 609 ~~I-~~~l~~l~~~~~~~~TvIvIaHRlsti~~a 641 (680)
..+ ...++.+.+ ..++|+|++||........
T Consensus 129 ~~i~~~il~~l~~--~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 129 IAIAYATLHYLLE--EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHh--ccCCeEEEEcccHHHHHHH
Confidence 443 223344432 1368999999998875544
No 442
>PRK01156 chromosome segregation protein; Provisional
Probab=99.07 E-value=3.6e-10 Score=137.32 Aligned_cols=77 Identities=29% Similarity=0.463 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHH------HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCC-eEEEEEecCcchHhhcCE
Q 005740 571 DLLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDR 643 (680)
Q Consensus 571 ~~LSGGQrQRIaI------ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~-~TvIvIaHRlsti~~aD~ 643 (680)
..||||||||+|| ||+++.+|++++|||||++||+.+...+.+.+...... ..+ .|+|+|||+...+..||+
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d~ 878 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVADV 878 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcCe
Confidence 3899999999975 59999999999999999999999999998888754322 122 589999999999999999
Q ss_pred EEEEe
Q 005740 644 IVVID 648 (680)
Q Consensus 644 I~vl~ 648 (680)
|+.++
T Consensus 879 ii~~~ 883 (895)
T PRK01156 879 AYEVK 883 (895)
T ss_pred EEEEE
Confidence 99998
No 443
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.06 E-value=2e-09 Score=128.65 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=62.4
Q ss_pred HccCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH----------hhcCEEEEEeCCEEEEe
Q 005740 587 ILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 587 ll~~p~ILILDEaTSaL-D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti----------~~aD~I~vl~~G~Ive~ 655 (680)
+..+|+++++|||++.| |+...+.+.+.+++.++ .|.+++++||.++.+ ..||+.++|.+|++.+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 36899999999999999 68999999999999874 478999999999887 47999999999999877
Q ss_pred cChHHHhh
Q 005740 656 GNHAELLH 663 (680)
Q Consensus 656 Gth~eLl~ 663 (680)
|+ .++.+
T Consensus 726 ~~-~~~~~ 732 (818)
T PRK13830 726 GT-REFYE 732 (818)
T ss_pred ch-HHHHH
Confidence 74 34443
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.06 E-value=3.3e-10 Score=137.51 Aligned_cols=75 Identities=25% Similarity=0.414 Sum_probs=67.3
Q ss_pred CCChHHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEE
Q 005740 572 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 645 (680)
Q Consensus 572 ~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~ 645 (680)
.|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.. .+.|+|+|||+......||+|+
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeEE
Confidence 79999999 66677789999999999999999999999999999988743 3579999999999888999999
Q ss_pred EEeC
Q 005740 646 VIDD 649 (680)
Q Consensus 646 vl~~ 649 (680)
+|++
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9983
No 445
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.06 E-value=5.2e-11 Score=138.71 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 288 QECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 362 (680)
Q Consensus 288 ~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 362 (680)
+...+..++.+.|.+.++.+||..+.|+.....| .....+..+...+..............+......+++++|+
T Consensus 36 ~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~ 115 (644)
T PRK10733 36 TFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGV 115 (644)
T ss_pred HHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHH
Confidence 3334556778889999999999999887655444 33333333333332221111122222333344566778999
Q ss_pred HHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccEEEEE
Q 005740 363 MSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVN 439 (680)
Q Consensus 363 ~lv~~g~is~G---~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~n 439 (680)
++++.|+++.| .+++|..+...+..+ ..+...+.++.....+.+|+.++.+...+. ..
T Consensus 116 ~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~------~~------------ 176 (644)
T PRK10733 116 WIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP------SR------------ 176 (644)
T ss_pred HHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH------HH------------
Confidence 99999999998 778877776666655 445555666666666777777766542210 00
Q ss_pred EEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 440 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 440 VsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.+++..++++| +.|+||+|+||||+++.+++-..
T Consensus 177 -------------~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 177 -------------FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -------------HHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 01112245666 99999999999999999988553
No 446
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=5.7e-10 Score=137.33 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHHcc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-
Q 005740 572 LLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 640 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~----------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~- 640 (680)
.|||||++|++||+||.. +|++|+|||||++||+++-..+.+.|.++.. .|+||++|||.......
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHhh
Confidence 899999999999999985 7999999999999999999999999999863 47999999999988655
Q ss_pred cCEEEEEeCC
Q 005740 641 VDRIVVIDDG 650 (680)
Q Consensus 641 aD~I~vl~~G 650 (680)
||+|.|+..|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999765
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.02 E-value=2.4e-09 Score=105.21 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCChHHHH-----HHHHHHH-HccCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHhccCCCCeEEEEEecCcch-----
Q 005740 572 LLSGGQKQ-----RIAIARA-ILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----- 637 (680)
Q Consensus 572 ~LSGGQrQ-----RIaIARA-ll~~p~ILILDEaTSaLD---~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst----- 637 (680)
.+|+||+| +..+.++ .-.+|+++|+||+|+.+| ......+.+.++.+++ .|.|+|+++|....
T Consensus 71 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 71 EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCccc
Confidence 68999999 3444444 556899999999999999 7777777777777754 37899999998764
Q ss_pred ----H-hhcCEEEEEe
Q 005740 638 ----I-KAVDRIVVID 648 (680)
Q Consensus 638 ----i-~~aD~I~vl~ 648 (680)
+ ..||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 3 3499999997
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.01 E-value=6e-10 Score=131.97 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=94.5
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE-EEccCCcCccccHHHH
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKSN 530 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~-~V~Qd~~LF~gTI~eN 530 (680)
|=+|+++. +.+..+.|.||+++||||+++.+. +..+-.++| +||-+.. ..-++.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktig---------------------l~~~maq~G~~vpa~~~-~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLG---------------------LAALMAKSGLPIPANEP-SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHH---------------------HHHHHHHhCCCcccCCC-ccccccce
Confidence 33444443 235679999999999999999984 222333444 4554410 01122333
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHH
Q 005740 531 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 610 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~ 610 (680)
|... ..++ +-|. . +-+.+|+|++|+..|+|++ .+|+++|||||++++|+..-..
T Consensus 374 i~~~----ig~~------------~si~---~------~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~a 427 (782)
T PRK00409 374 IFAD----IGDE------------QSIE---Q------SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAA 427 (782)
T ss_pred EEEe----cCCc------------cchh---h------chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHH
Confidence 3110 0010 0010 0 1136899999999999999 8999999999999999998887
Q ss_pred HHHH-HHHHhccCCCCeEEEEEecCcchHhhc-CEEEEEeCCEEE
Q 005740 611 VKGV-LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 653 (680)
Q Consensus 611 I~~~-l~~l~~~~~~~~TvIvIaHRlsti~~a-D~I~vl~~G~Iv 653 (680)
+..+ ++.+.+ .++++|++||.......+ |+.. +.++.+.
T Consensus 428 la~aile~l~~---~~~~vIitTH~~el~~~~~~~~~-v~~~~~~ 468 (782)
T PRK00409 428 LAISILEYLRK---RGAKIIATTHYKELKALMYNREG-VENASVE 468 (782)
T ss_pred HHHHHHHHHHH---CCCEEEEECChHHHHHHHhcCCC-eEEEEEE
Confidence 7655 455532 478999999998876654 4443 3455543
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=1.1e-09 Score=120.45 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=117.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-++-++++-.|.. ...+++++ |++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 3566777777764 24688885 99999999999999999999999999999999988877766443
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccccc-CCCCCChHHHHHHHHHHHHc----
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSGGQKQRIAIARAIL---- 588 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v-ge~~LSGGQrQRIaIARAll---- 588 (680)
.+++|.+.. .++..++. +-+.| .-.+-|.|+|+|.+.+.+.+
T Consensus 195 -----------~ev~e~~~~-------------~l~~~gl~---------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 195 -----------REVKDFIRK-------------ELGEEGMR---------KSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred -----------ccHHHHHHH-------------Hhhhcccc---------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 233333320 00000100 00112 33467999999999999988
Q ss_pred ---cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 589 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 589 ---~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
.++-+|++||+|...|+. ++|..++.+.- ..|.|..+-+|-.+..+.|-+ .++|.|...++
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p---~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELP---IGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCC---CCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999997 44555555542 247888888883333444544 57899876544
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.00 E-value=7.2e-10 Score=110.71 Aligned_cols=119 Identities=27% Similarity=0.365 Sum_probs=78.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 543 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~ee 543 (680)
.+.|+|||||||||+++.|++.+++. .|.|..-+.++ ++..+ ...+++.|.. .| . +.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E~~~~---~~~~~i~q~~------------vg-~-~~---- 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-EFVHE---SKRSLINQRE------------VG-L-DT---- 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-ccccc---Cccceeeecc------------cC-C-Cc----
Confidence 58999999999999999999988754 67777655554 22111 1112233311 01 0 00
Q ss_pred HHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCC
Q 005740 544 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 623 (680)
Q Consensus 544 i~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~ 623 (680)
..++ =++++|+..+|+++++||+. |.++-..+ ++.. .
T Consensus 61 ---------------------------~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a----~ 97 (198)
T cd01131 61 ---------------------------LSFE------NALKAALRQDPDVILVGEMR---DLETIRLA---LTAA----E 97 (198)
T ss_pred ---------------------------cCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHH----H
Confidence 0111 14789999999999999996 66654433 3333 2
Q ss_pred CCeEEEEEecCcchHhhcCEEEEEe
Q 005740 624 TKRTVIVIAHRLSTIKAVDRIVVID 648 (680)
Q Consensus 624 ~~~TvIvIaHRlsti~~aD~I~vl~ 648 (680)
.|.+++.+.|..+.....||++.|-
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhhc
Confidence 3689999999999988888887663
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.95 E-value=9.5e-10 Score=137.12 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.||||||||++|||++ +++||++||||||++||+.+...+.+.|..+. ++.|+|+|||++..+..||+++.+
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~----~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS----KNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc----cCCEEEEEEcChhHHHHhhhHeee
Confidence 7999999999999998 57889999999999999999999999998874 357999999999999999999755
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.94 E-value=5.9e-09 Score=99.05 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=78.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 544 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei 544 (680)
.++|.|++|+||||+++.+++...+..|.|.+-+.+... ...+ ++.... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~-~-------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE-S-------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh-h--------
Confidence 378999999999999999999887766666554432211 1111 110000 0
Q ss_pred HHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH----------HHHHHH
Q 005740 545 EWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES----------EHYVKG 613 (680)
Q Consensus 545 ~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t----------E~~I~~ 613 (680)
....+++..-.... ..-+.++.++++.+++.-.+|+++|+||+++-+|... .+.+.+
T Consensus 51 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 51 ------------LKGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred ------------hccccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 00001111111111 1334566668899999999999999999996655543 344444
Q ss_pred HHHHHhccCCCCeEEEEEecCcchH
Q 005740 614 VLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 614 ~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
.++..++ .+.|+++++|.....
T Consensus 119 l~~~~~~---~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARK---GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhc---CCceEEEEEecCCcc
Confidence 4444432 378999999988654
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.90 E-value=6.2e-10 Score=111.39 Aligned_cols=78 Identities=28% Similarity=0.364 Sum_probs=66.2
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCC------------CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~------------p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
++|+.++|+||||||||||+++|++.++ |..|+ +||.|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999996 88899 699999999999998854 588899999999
Q ss_pred HHHhcCCCCCCCHHHHHHHH
Q 005740 529 SNIMYGCPKDVKNEDIEWAA 548 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~ 548 (680)
+| .||. +.+++.+++
T Consensus 78 ~~-~y~~----~~~~i~~~l 92 (205)
T PRK00300 78 GN-YYGT----PRSPVEEAL 92 (205)
T ss_pred Cc-cccC----cHHHHHHHH
Confidence 98 4662 345555554
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.90 E-value=5.4e-09 Score=107.06 Aligned_cols=146 Identities=15% Similarity=0.239 Sum_probs=87.8
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhc-CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 537 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 537 (680)
-+++|..+.|.|++||||||++..++- ... ..+ .+.|+..|-.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~-------------------~~~y~~~e~~---------------- 64 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK-------------------KVYVITTENT---------------- 64 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC-------------------EEEEEEcCCC----------------
Confidence 589999999999999999999988752 222 222 3344443211
Q ss_pred CCCHHHHHHHHHHhcH--HHHHHcCCCCccccc----CC-CCCChHHHHHHHHHHHHcc--CCCeEEEeCCCCCCCHHHH
Q 005740 538 DVKNEDIEWAAKQAYV--HEFILSLPCGYETLV----DD-DLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESE 608 (680)
Q Consensus 538 ~~s~eei~~A~~~a~l--~dfI~~LP~G~dT~v----ge-~~LSGGQrQRIaIARAll~--~p~ILILDEaTSaLD~~tE 608 (680)
.+++.+-++..+. .+++. .|+-..+ .+ ...|.++++.+...+..++ +|+++++||+|+.+|..+.
T Consensus 65 ---~~~~~~~~~~~g~~~~~~~~---~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~ 138 (234)
T PRK06067 65 ---SKSYLKQMESVKIDISDFFL---WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE 138 (234)
T ss_pred ---HHHHHHHHHHCCCChhHHHh---CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence 1122222222211 11111 1211111 11 2457789999999999998 9999999999976554444
Q ss_pred HHHHHH---HHHHhccCCCCeEEEEEecCcch-------H-hhcCEEEEEeC
Q 005740 609 HYVKGV---LHALRNDCKTKRTVIVIAHRLST-------I-KAVDRIVVIDD 649 (680)
Q Consensus 609 ~~I~~~---l~~l~~~~~~~~TvIvIaHRlst-------i-~~aD~I~vl~~ 649 (680)
..+.+. ++.+. .+++|+++++|.... + --+|-++.|+.
T Consensus 139 ~~~~~~l~~l~~l~---~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 139 DDILNFLTEAKNLV---DLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHH---hCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 334443 44433 247899999997653 2 23677777764
No 455
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.84 E-value=3.8e-05 Score=84.26 Aligned_cols=193 Identities=12% Similarity=0.081 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 005740 215 LTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL-------------TLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 215 l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L-------------~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
--.|+..|++...+........++.++++++..+.++..+|..+ ..++++...+-..+....+++..
T Consensus 190 PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~ 269 (409)
T PRK11098 190 AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLP 269 (409)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccch
Confidence 45899999998888777777788888888888888888777653 22333223333444455676666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+..-+.|+..++....+.-.=++. |+.|.++.++..++..+...+........+...........++-+++.
T Consensus 270 ~Lnf~qqr~EAdFR~~LVrvrena--------E~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~ 341 (409)
T PRK11098 270 GLEFKNQRVEAAYRKELVYGEDDA--------DRATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLL 341 (409)
T ss_pred hhHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554444433221111111 223333333333333333322222222222222222222333333445
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005740 362 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 415 (680)
Q Consensus 362 ~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~ 415 (680)
+-....|++|.|.+........++..++..+.+.+.++.+-.+..+|+.++.+.
T Consensus 342 aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 342 FPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999988888899999999999999999999999999987653
No 456
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.83 E-value=5.1e-09 Score=130.66 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.|||||||+++||+++. ++||++|||||+++||+.....+.+.|..+. ++.++|+|||+..++..||+++.+
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPMIEYADRAIGV 1149 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHhcceeEeE
Confidence 79999999999999997 5789999999999999999999999998873 357899999999999999999987
Q ss_pred eC
Q 005740 648 DD 649 (680)
Q Consensus 648 ~~ 649 (680)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 64
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=1.3e-08 Score=112.07 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=88.2
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC---CeeCCCCCHHH
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTDLDIRW 508 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id---G~di~~~~~~~ 508 (680)
.+.++.++|+..|... ..+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 3568999999999743 57999996 999999999999999999999999999999999999885 67776665544
Q ss_pred h----hccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccccc
Q 005740 509 L----REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 568 (680)
Q Consensus 509 L----R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v 568 (680)
+ ++.|++|+|.. +..-+++..+--...+.|+... +|.|-.+
T Consensus 214 l~~~r~rtI~vV~qsd-----------------~~~~~r~~~~~~a~~iAEyfrd--~G~~Vll 258 (450)
T PRK06002 214 LADNLKKAVAVVATSD-----------------ESPMMRRLAPLTATAIAEYFRD--RGENVLL 258 (450)
T ss_pred HHHhhCCeEEEEEcCC-----------------CCHHHHHHHHHHHHHHHHHHHH--cCCCEEE
Confidence 3 36799999952 2334455554445555676664 4777665
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=1.7e-07 Score=85.59 Aligned_cols=117 Identities=37% Similarity=0.470 Sum_probs=82.5
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCC-ceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 540 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s 540 (680)
+|..+.|+||+||||||+++.|++.+.... +-++++.....+.......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999998665 5666665443332222211
Q ss_pred HHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH----
Q 005740 541 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV---- 614 (680)
Q Consensus 541 ~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~---- 614 (680)
.....+ ....+++.++..+++|-..+|.++++||+....+..........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 111111 25688899999999999989999999999999999888766531
Q ss_pred -HHHHhccCCCCeEEEEEecC
Q 005740 615 -LHALRNDCKTKRTVIVIAHR 634 (680)
Q Consensus 615 -l~~l~~~~~~~~TvIvIaHR 634 (680)
...... ..+..+|..+|.
T Consensus 107 ~~~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHHHh--cCCCEEEEEeCC
Confidence 111111 245788888884
No 459
>PRK02224 chromosome segregation protein; Provisional
Probab=98.80 E-value=9.9e-09 Score=124.72 Aligned_cols=77 Identities=30% Similarity=0.460 Sum_probs=67.1
Q ss_pred CCChHHHH------HHHHHHHHccC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh
Q 005740 572 LLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 639 (680)
Q Consensus 572 ~LSGGQrQ------RIaIARAll~~-----p-~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~ 639 (680)
.||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+... ...++|+|||+...+.
T Consensus 781 ~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~--~~~qviiish~~~~~~ 858 (880)
T PRK02224 781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL--GVEQIVVVSHDDELVG 858 (880)
T ss_pred hcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc--CCCeEEEEECChHHHH
Confidence 89999999 99999999974 2 679999999999999999999988887521 1248999999999999
Q ss_pred hcCEEEEEeCC
Q 005740 640 AVDRIVVIDDG 650 (680)
Q Consensus 640 ~aD~I~vl~~G 650 (680)
.||++++|++.
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
No 460
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.77 E-value=1.4e-08 Score=124.59 Aligned_cols=75 Identities=31% Similarity=0.301 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHHHHcc--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cC
Q 005740 572 LLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VD 642 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~--------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD 642 (680)
.|||||+||++|||||.. +|++|+|||||++||+.+-..+.+.|.++.+ .|+||++|||-...... ..
T Consensus 949 ~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 949 TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHhccc
Confidence 899999999999999995 8999999999999999999999999999864 48999999995555444 44
Q ss_pred EEEEEeC
Q 005740 643 RIVVIDD 649 (680)
Q Consensus 643 ~I~vl~~ 649 (680)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 5555543
No 461
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.72 E-value=9.9e-09 Score=103.80 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH
Q 005740 572 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
.+|.|+||.++|+-+++..+ .++++|||-++|+|...+.+.+.|.+..+ .+.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence 57999999999999988877 89999999999999999999999977643 257899999987654
No 462
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.72 E-value=5.3e-05 Score=79.90 Aligned_cols=124 Identities=17% Similarity=0.068 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 214 GLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL-SALLICSFLSIIVSVYGQYQKRASVLTQECNA 292 (680)
Q Consensus 214 ~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~l-v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (680)
..=.|+++|++...+........++..++.++.....+...+..++. ++++...+..++....++...+...+.++..+
T Consensus 127 NpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea 206 (281)
T PF06472_consen 127 NPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEA 206 (281)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Confidence 44579999999999888888888888888887777777777777766 44444555566677888888888888888888
Q ss_pred HHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 293 HANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 337 (680)
Q Consensus 293 ~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (680)
+......-..++.+.|-.++.|+.|.++.++..++..+...+...
T Consensus 207 ~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 251 (281)
T PF06472_consen 207 DFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIR 251 (281)
T ss_pred hHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999988888877666555433
No 463
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=1.2e-07 Score=95.94 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=84.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 527 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI 527 (680)
..|-+|++|++++|++++|.||+|+||||+++.+....-. +-|. + ++-+ +..++++. .+| +-.-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~---vpa~-------~~~i~~~~---~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-D---VPAK-------SMRLSLVD---RIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-c---cCcc-------ccEecccc---EEEEecCc
Confidence 4789999999999999999999999999999988754211 1110 0 0000 01122111 111 1122
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q 005740 528 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 607 (680)
Q Consensus 528 ~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 607 (680)
.||+..|. ..=.. |-+|++-.=....+|++++|||+.+++|+..
T Consensus 83 ~d~~~~~~--StF~~----------------------------------e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 83 RDDIMKGE--STFMV----------------------------------ELSETANILRHATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred ccccccCc--chHHH----------------------------------HHHHHHHHHHhCCCCeEEEEecccCCCCchH
Confidence 33333221 00011 2222211111125789999999999999998
Q ss_pred HHHHHHH-HHHHhccCCCCeEEEEEecCcchHhhc
Q 005740 608 EHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAV 641 (680)
Q Consensus 608 E~~I~~~-l~~l~~~~~~~~TvIvIaHRlsti~~a 641 (680)
...+..+ ++.+.+ ..+.++|++||....+...
T Consensus 127 g~~la~ail~~L~~--~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 127 GYAIAHAVLEYLVK--KVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHH--hcCCcEEEEeccHHHHHHh
Confidence 8888877 666643 1378999999998876654
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.68 E-value=5.7e-07 Score=108.33 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=49.3
Q ss_pred HHHHHccCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh
Q 005740 583 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 640 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaL-D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~ 640 (680)
|+|++..+|+++++|||++.| |+.+.+.+.+.++++++ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 78999999999988874 47899999999988764
No 465
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.67 E-value=3.1e-05 Score=77.88 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=106.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh
Q 005740 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGC----FSIANIV 201 (680)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~----~~~~~~~ 201 (680)
..+++++++.++..+.+...++.++.|++++..|+...+++.. ....+.++.++..++...|... +......
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~----~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~ 79 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW----QALMYAALVLLMWAIGAARRIYDTRVFSRIYAE 79 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHH
Confidence 4578899999999999999999999999999998776544321 1122222222323333333222 1111111
Q ss_pred c--c---hhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005740 202 L--D---VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 276 (680)
Q Consensus 202 l--~---~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~ 276 (680)
+ | -.--++.+.+.+..|++ =..++-+++...++.++.+++++++++++++.++.++++.++..+.++.++...|
T Consensus 80 la~~vi~~qr~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i~~~f 158 (237)
T PF13748_consen 80 LAVPVILSQRQQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLILPRF 158 (237)
T ss_pred HhHHHHHHHHHhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 11234567889999984 4567778999999999999999999999999999999999888877777766666
Q ss_pred HHHHHHHHHHH
Q 005740 277 GQYQKRASVLT 287 (680)
Q Consensus 277 ~~~~~~~~~~~ 287 (680)
.++..+...+.
T Consensus 159 ~~~~~~L~~~L 169 (237)
T PF13748_consen 159 ARRNYRLYRRL 169 (237)
T ss_pred HHHHHHHHHHH
Confidence 66555444433
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=98.65 E-value=1.5e-08 Score=110.15 Aligned_cols=133 Identities=21% Similarity=0.199 Sum_probs=94.3
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHH
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI 531 (680)
-++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|.++|..-+. ...++++.+++|+..||+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4677777789999999999999999999999999999999999998854333 3446789999999999998888888
Q ss_pred hcCCCCC---CCHHHHHHHHHHhcHHHHHHcCCCC--cccccCCCCCChHHHHHHHHHHHHccC
Q 005740 532 MYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCG--YETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 532 ~~g~~~~---~s~eei~~A~~~a~l~dfI~~LP~G--~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
.+..... ....|+.+.++.|..++....-..| ...-+.+.+|| ++|..--+.|++.
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 8763211 1124555666665544332222222 11111224675 7888888888776
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.64 E-value=4.2e-08 Score=96.98 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=61.2
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcC--c-cccHH
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--L-QMDIK 528 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~L--F-~gTI~ 528 (680)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+++.+-..++ -+..++++.|+... + .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 566677889999999999999999999999999999999999999875433332 24567777766532 2 35777
Q ss_pred HHHhc
Q 005740 529 SNIMY 533 (680)
Q Consensus 529 eNI~~ 533 (680)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77754
No 468
>PRK12369 putative transporter; Reviewed
Probab=98.63 E-value=0.00032 Score=75.31 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 217 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL------------SALLICSFLSIIVSVYGQYQKRAS 284 (680)
Q Consensus 217 srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~l------------v~l~~~~l~~~~~~~~~~~~~~~~ 284 (680)
.|++.|++...+........++.++++++..+.++..+|..+.+ ++++...+..+++.+.+++..+..
T Consensus 118 QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln 197 (326)
T PRK12369 118 QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLE 197 (326)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhh
Confidence 79999999988877777788888888888877777776644432 222222333344455666655554
Q ss_pred HHHHHHHHHHHHHHHHHHchHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 285 VLTQECNAHANNVAQETLCMMRTVRVYGTE-EKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 363 (680)
Q Consensus 285 ~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 363 (680)
-+.++..++..-.+.-.=++.+. + .| +...++|.+..+...+...+. .....+... ......++-.++.+-
T Consensus 198 ~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~l~~~f~~v~~n~~~~~~~~-~~l~~~~~~---y~~~~~i~p~li~aP 269 (326)
T PRK12369 198 YNNQKVEAAFRKELVYAEDDKKN---Y-AKPETLIELFTGLRFNYFRLFLHY-GYFNIWLIS---FSQMMVIVPYLIMAP 269 (326)
T ss_pred HHHHHHHHHHHHHHHhhccchhh---h-hhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44444444332211110000000 1 12 223334444433333333222 222222222 222222333344456
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005740 364 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 414 (680)
Q Consensus 364 lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~ 414 (680)
....|+++.|.+........++..++..+.+.+.++.+-.+..+|+.++.+
T Consensus 270 ~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 270 GLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999998888888889999999999999999999999998765
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=2.4e-08 Score=109.94 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=64.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC---ceEEECCeeCCCCCHHHh------hccEEEEccCC
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL------REKIGFVGQEP 520 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~di~~~~~~~L------R~~I~~V~Qd~ 520 (680)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3689999 9999999999999999999999999999999986 445556666666555544 55799999997
Q ss_pred cCc-cccHHHHHh
Q 005740 521 QLL-QMDIKSNIM 532 (680)
Q Consensus 521 ~LF-~gTI~eNI~ 532 (680)
..+ .-++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 666 345555553
No 470
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.60 E-value=5.8e-08 Score=108.40 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=94.6
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhc
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 533 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~ 533 (680)
++.++.+++|+++++|||+|+||||++..|++.|.+..|. ++|++|++|+ |.-+..||+.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHH
Confidence 3444556679999999999999999999999998777774 2689999998 66778999975
Q ss_pred C-CCCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHH-HHHHHHHHHccCC-----CeEEEeCCCCC
Q 005740 534 G-CPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK-QRIAIARAILRDP-----AILLLDEATSA 602 (680)
Q Consensus 534 g-~~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr-QRIaIARAll~~p-----~ILILDEaTSa 602 (680)
. ...++. ++...... -+..+.+.....|..... +|+ .++.-+.+++.++ .+|+||..|..
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~-------aL~~L~d~d~VLIDTaGr--~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRL-------ALSELRNKHIVLIDTIGM--SQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHhCCCeeccCCchhHHH-------HHHhccCCCeEEeCCCCc--ChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 2 111111 11111111 223444433333443111 121 1233344445544 68999988876
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH----------hhcCEEEEEeCCEEE
Q 005740 603 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDGRII 653 (680)
Q Consensus 603 LD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti----------~~aD~I~vl~~G~Iv 653 (680)
-| +.+.++.... .+.+-+++|+=-.+. +.-=-|..+-+|+=|
T Consensus 379 ~~------l~~i~~~f~~---~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 379 DT------LNEVVQAYRG---PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HH------HHHHHHHhcc---CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 22 3333333321 256777888743332 112346777777644
No 471
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.60 E-value=5.9e-08 Score=105.31 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=67.2
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC--CC-ceEEECCeeCCCCCHHHhhccEEEEccCCc-----CccccHHHHHh
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-----LLQMDIKSNIM 532 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~-G~I~idG~di~~~~~~~LR~~I~~V~Qd~~-----LF~gTI~eNI~ 532 (680)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....|+ ++..+.+++..++|.|... -|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 33 4676666555 6888888887889988643 68899999998
Q ss_pred cCCCCCC------CHHH-HHHHHHHh
Q 005740 533 YGCPKDV------KNED-IEWAAKQA 551 (680)
Q Consensus 533 ~g~~~~~------s~ee-i~~A~~~a 551 (680)
.. | |. .|+| +..|++.|
T Consensus 211 ~~-P-d~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-P-HAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-C-CEEeeeeeCCHHHHHHHHHHH
Confidence 75 3 42 3444 55677763
No 472
>PRK08149 ATP synthase SpaL; Validated
Probab=98.53 E-value=1.7e-07 Score=103.19 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=78.2
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC---ceEEECCeeCCCCCHHHhh----ccEEEEccCCcC
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR----EKIGFVGQEPQL 522 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~di~~~~~~~LR----~~I~~V~Qd~~L 522 (680)
..+++++ +++.+||+++|+|+||+|||||++.|+|.++++. |.|-.+|.+++++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s-- 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS-- 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC--
Confidence 3689999 9999999999999999999999999999999998 9999999999988777765 5677775532
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccccc
Q 005740 523 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 568 (680)
Q Consensus 523 F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v 568 (680)
.+..-+++..+--..-+.|+... +|.|-.+
T Consensus 216 --------------d~p~~~r~~a~~~a~tiAE~fr~--~G~~Vll 245 (428)
T PRK08149 216 --------------DFSSVDRCNAALVATTVAEYFRD--QGKRVVL 245 (428)
T ss_pred --------------CCCHHHHHhHHHHHHHHHHHHHH--cCCCEEE
Confidence 12334555555555555677664 4777665
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.53 E-value=1.8e-08 Score=114.07 Aligned_cols=156 Identities=12% Similarity=0.169 Sum_probs=97.7
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHH--hcCCCCCCceEEECCeeCCCCCHHHhhcc---EEEEccCCcCccccHHHHHhc
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWLREK---IGFVGQEPQLLQMDIKSNIMY 533 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL--~r~y~p~~G~I~idG~di~~~~~~~LR~~---I~~V~Qd~~LF~gTI~eNI~~ 533 (680)
-+++|..+.|.|++||||||+..-. .|.-++.+.-+++... -+.++++++ +|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999999865 3455556777888763 344555443 4544443210 011111
Q ss_pred CCCCCCC-HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH--HHHccCCCeEEEeCCCCCCCHHHHHH
Q 005740 534 GCPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHY 610 (680)
Q Consensus 534 g~~~~~s-~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA--RAll~~p~ILILDEaTSaLD~~tE~~ 610 (680)
- ++. .......++..++++++..++ ..+|+||+||+.|+ .++..+|+.. ....+.
T Consensus 88 ~---~~~~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~ 145 (484)
T TIGR02655 88 L---DASPDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRRE 145 (484)
T ss_pred E---ecCchhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHH
Confidence 1 111 111112333444444444333 25799999999999 6776665443 356666
Q ss_pred HHHHHHHHhccCCCCeEEEEEecCcch--------H-h-hcCEEEEEe
Q 005740 611 VKGVLHALRNDCKTKRTVIVIAHRLST--------I-K-AVDRIVVID 648 (680)
Q Consensus 611 I~~~l~~l~~~~~~~~TvIvIaHRlst--------i-~-~aD~I~vl~ 648 (680)
+.+.++.+++ .|+|+|+++|..+. + . -||.|+.|+
T Consensus 146 l~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 146 IFRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7777777653 48999999998753 1 2 389999987
No 474
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.52 E-value=4.9e-07 Score=100.44 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=118.3
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH---HH-----hhccEEEEccCCc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW-----LREKIGFVGQEPQ 521 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~---~~-----LR~~I~~V~Qd~~ 521 (680)
..+++++ +++.+||+++|+|+||+|||||++.|.|..+|+.|.|...|..-+++.. +. +++.+-++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~--- 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT--- 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC---
Confidence 4699999 9999999999999999999999999999999999988776665554331 11 1122222221
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCC-hHHHHH-HHHHHHHccCCCeEEEeCC
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS-GGQKQR-IAIARAILRDPAILLLDEA 599 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LS-GGQrQR-IaIARAll~~p~ILILDEa 599 (680)
..+..-++...+.-..-+.|+... +|+|-.+==.+++ =-|-|| |++ .+.||
T Consensus 227 --------------~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~REisl-----------~~ge~ 279 (440)
T TIGR01026 227 --------------SDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQREIGL-----------AAGEP 279 (440)
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHHHHHH-----------hcCCC
Confidence 112234444444444445577664 5888765321222 122222 222 23553
Q ss_pred --CCCCCHHHHHHHHHHHHHHhccCCCCe-------EEEEEecCcchHhhcCEEEEEeCCEEEEecChHH
Q 005740 600 --TSALDSESEHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 600 --TSaLD~~tE~~I~~~l~~l~~~~~~~~-------TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~e 660 (680)
+.++|+..-..+.+.+++... .++ |+++-+|+++ =.-||++.-+.+|+|+-.+.-++
T Consensus 280 P~~~Gypp~~~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 280 PATKGYTPSVFSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CcccccChhHHHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 568999999999988888753 357 8888999983 44689999999999998766443
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.46 E-value=4.4e-07 Score=113.16 Aligned_cols=148 Identities=19% Similarity=0.270 Sum_probs=84.3
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHH-hcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhc
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLL-LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 533 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL-~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~ 533 (680)
=++++.+.++++||+|++|+|||||++.+ .++-+..+|.+++++..++... .. +
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~--------~~-----------------~ 253 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM--------EI-----------------Y 253 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch--------hh-----------------c
Confidence 35677788999999999999999999999 5555566899999863322110 00 0
Q ss_pred CCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q 005740 534 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 613 (680)
Q Consensus 534 g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 613 (680)
+ ..+..+......+. .+++.++.+..+..+. . .|+.|+|+ -.++-+|||||.. . ..+.+
T Consensus 254 ~-~~~~~~~~~~~~l~----~~~l~~il~~~~~~~~--~-~~~~~~~L------~~krvLLVLDdv~----~---~~~l~ 312 (1153)
T PLN03210 254 S-SANPDDYNMKLHLQ----RAFLSEILDKKDIKIY--H-LGAMEERL------KHRKVLIFIDDLD----D---QDVLD 312 (1153)
T ss_pred c-cccccccchhHHHH----HHHHHHHhCCCCcccC--C-HHHHHHHH------hCCeEEEEEeCCC----C---HHHHH
Confidence 0 00000000111111 1222222222222221 1 25666653 2455577889853 2 23345
Q ss_pred HHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEe
Q 005740 614 VLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVID 648 (680)
Q Consensus 614 ~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~ 648 (680)
++....+.+..|.++|++||+...++. +|+++.++
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 555443322357899999999998865 68888775
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.45 E-value=6e-07 Score=97.31 Aligned_cols=121 Identities=26% Similarity=0.341 Sum_probs=79.4
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCC-CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 538 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 538 (680)
.+++..+.|.||+||||||+++.+.+.++ +.+|+|..-+.++.-. .....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 45789999999999999999999999776 4567777655433211 00111111111
Q ss_pred CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005740 539 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 618 (680)
Q Consensus 539 ~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l 618 (680)
.+|....+ --=++++||-.+|+++++||++ |.++-....++.
T Consensus 176 ----------------------------evg~~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa--- 217 (343)
T TIGR01420 176 ----------------------------EVGLDTLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA--- 217 (343)
T ss_pred ----------------------------ccCCCCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH---
Confidence 01110000 1234688999999999999997 888876544432
Q ss_pred hccCCCCeEEEEEecCcchHhhcCEEE
Q 005740 619 RNDCKTKRTVIVIAHRLSTIKAVDRIV 645 (680)
Q Consensus 619 ~~~~~~~~TvIvIaHRlsti~~aD~I~ 645 (680)
..|.+++...|..+.....||++
T Consensus 218 ----~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 218 ----ETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred ----HcCCcEEEEEcCCCHHHHHHHHH
Confidence 24789999999988876666664
No 477
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.44 E-value=4.5e-07 Score=93.23 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=37.5
Q ss_pred HHccCCCeEEEeCCCCC------CCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 586 AILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 586 All~~p~ILILDEaTSa------LD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
+..++|+++|+| |+++ +|+..-..+.+.|.++.++ .|+|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEeccC
Confidence 345799999999 6654 6888888888888887653 478999999976
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.40 E-value=3.3e-07 Score=90.58 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=49.3
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 520 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~ 520 (680)
|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 6889999888877777888999999984
No 479
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.39 E-value=3.7e-06 Score=81.28 Aligned_cols=164 Identities=21% Similarity=0.267 Sum_probs=102.1
Q ss_pred cEEEEeCCCCCcHHHHHHHH---hcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLL---LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 540 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL---~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s 540 (680)
-++-|+|++|||||||+..| +||+..-.|+ -..| +++ .=+..+.+++++...++.+
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~-n~~~----~~~----------------~s~s~l~~~~k~~~~~k~~ 96 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGK-NFKG----ELD----------------ASHSALVDYAKLHKRKKPP 96 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCc-CcCc----ccc----------------cccchHHHhHHHhhcCCCC
Confidence 46889999999999999877 4666543333 0000 110 1112344555543222222
Q ss_pred ------HHHHHHHHHHhcHHHHHHcCCCCcccccCCC---CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q 005740 541 ------NEDIEWAAKQAYVHEFILSLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 611 (680)
Q Consensus 541 ------~eei~~A~~~a~l~dfI~~LP~G~dT~vge~---~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I 611 (680)
-|.....+. .++|+ +. +...|.+ .-|-||-=-=-+.|.+ .+.-|.|||||-|+|-+.-+-.+
T Consensus 97 ~g~FlRAEs~yn~as--~~De~----~~--e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlel 167 (233)
T COG3910 97 IGFFLRAESFYNVAS--YLDEA----DG--EANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLEL 167 (233)
T ss_pred cceEEehhHHHHHHH--HHHhh----hh--hcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHH
Confidence 244444444 22232 21 0113432 5699997655566665 45689999999999999999999
Q ss_pred HHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHH
Q 005740 612 KGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 612 ~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eL 661 (680)
..-|+++.+ .|.-+|+.||.+=.+.. --+|+-++.|-|. .-+++|.
T Consensus 168 la~l~~la~---sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~-~~~fe~t 214 (233)
T COG3910 168 LAILRDLAD---SGAQIIIATHSPILLAIPGAEIYEISESGIE-ERDFEET 214 (233)
T ss_pred HHHHHHHHh---cCCeEEEEecChhheeCCCcEEEEEecCCcc-ccchHHH
Confidence 988888864 36789999999766543 4488888887754 3445543
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.38 E-value=2.5e-07 Score=90.72 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc-cEEEEccCCcC-ccccHHHHHhc
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQEPQL-LQMDIKSNIMY 533 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~-~I~~V~Qd~~L-F~gTI~eNI~~ 533 (680)
+||.++|+|+|||||||+++.|.+++.| +.+||.++.. ....|+ ..++.+|+... ...++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999987 6899988743 233333 34566666432 23344444443
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.37 E-value=2e-07 Score=91.22 Aligned_cols=78 Identities=29% Similarity=0.376 Sum_probs=57.2
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCC------------CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~------------p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
|+.++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+.+.+ .++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 44454 467766666767776654 57778888888887
Q ss_pred HhcCCCCCCCHHHHHHHHHH
Q 005740 531 IMYGCPKDVKNEDIEWAAKQ 550 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~~ 550 (680)
. || .+.+.+.++++.
T Consensus 76 ~-y~----~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG----TPKSPVEEALAA 90 (180)
T ss_pred e-eC----CcHHHHHHHHHC
Confidence 3 66 235556555543
No 482
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.33 E-value=1.8e-06 Score=88.03 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=40.1
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHh-cCCCCCCceEEECCeeCCCCCHHHh---hccEEEEccC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWL---REKIGFVGQE 519 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~-r~y~p~~G~I~idG~di~~~~~~~L---R~~I~~V~Qd 519 (680)
-+++|+.++|.|++||||||++.-++ +..++.++.++++. +-+.+++ .+++++..|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~----e~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT----EESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc----cCCHHHHHHHHHHhCCCHHH
Confidence 58999999999999999999987543 34466667788876 2333333 3345655554
No 483
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.33 E-value=1.1e-05 Score=87.79 Aligned_cols=173 Identities=25% Similarity=0.324 Sum_probs=120.2
Q ss_pred EEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh-cCCCCCCceEEECCeeCCCCCHHHhhccEEEEcc
Q 005740 440 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 518 (680)
Q Consensus 440 VsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Q 518 (680)
|+|..|++ ..+.+ +-||+| .+.|||.---|||||++.|. |-|+---| ||. +.|--. .
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----------E~VVT~-~ 284 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----------EFVVTD-P 284 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----------eEEEEC-C
Confidence 77888753 24554 568999 99999999999999999886 56764444 442 222111 1
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 519 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 519 d~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
+.. .| .+.| -.....+++..||.+||.|.||.--- .+=||---|=-.|..||=..+++|++|
T Consensus 285 ~av----ki----------rAED---GR~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 285 DAV----KI----------RAED---GRSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred Cce----EE----------EecC---CceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 111 00 0101 12344567889999999999998332 478999999999999999999999999
Q ss_pred CCCCCC-----CHHHHHHH----------HHHHHHHhccCCCCeEEEEEecCc-chHhhcCEEEEEeCCEEE
Q 005740 598 EATSAL-----DSESEHYV----------KGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRII 653 (680)
Q Consensus 598 EaTSaL-----D~~tE~~I----------~~~l~~l~~~~~~~~TvIvIaHRl-sti~~aD~I~vl~~G~Iv 653 (680)
|=|||- |...++.| .+-++.+.++ .|-++|+|+=-. ..+..||+|++||+=+-.
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 999985 66667666 2334555443 356666666444 447789999999987643
No 484
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.33 E-value=2.2e-07 Score=87.28 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=52.7
Q ss_pred EEEeCCCCCcHHHHHHHHhcCCCC-------------CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHh
Q 005740 466 VAIVGLSGSGKSTFVNLLLRLYEP-------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 532 (680)
Q Consensus 466 vAIVG~SGsGKSTL~~LL~r~y~p-------------~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~ 532 (680)
++|+||||||||||+++|++.+++ ..|+ +||++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4455 58888888888888874 558888888898888 5
Q ss_pred cC
Q 005740 533 YG 534 (680)
Q Consensus 533 ~g 534 (680)
||
T Consensus 76 yg 77 (137)
T cd00071 76 YG 77 (137)
T ss_pred ec
Confidence 77
No 485
>PLN02796 D-glycerate 3-kinase
Probab=98.31 E-value=2.5e-07 Score=98.77 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=54.4
Q ss_pred CcccceeEEe---eCCcE-----EEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCCCHHHhhc
Q 005740 451 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 451 ~VL~~isl~I---~~Ge~-----vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~~~~~~LR~ 511 (680)
.+++++++++ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5899999998 67887 9999999999999999999999875 689999999988877777776
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.28 E-value=7.1e-07 Score=88.91 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=60.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHH-----HhcCCCCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN-----IMYGCPKDV 539 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN-----I~~g~~~~~ 539 (680)
.+||+|+|||||||+++.|.+.+ ..|++. ++++|.+...-+.+++ ..++. ++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~-------------------v~~~D~~~~~~~~~~~~~~~~~~~~~-~~~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVV-------------------IISQDSYYKDLSHEELEERKNNNYDH-PDA 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeE-------------------EEEecccccccccccHHHhccCCCCC-CCc
Confidence 48999999999999999999998 333343 3444433322222221 12232 222
Q ss_pred -CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 005740 540 -KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605 (680)
Q Consensus 540 -s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 605 (680)
+.+.+.+. +.++. .|-....---+.|.|++++-.+ .+.+++++|+|++.+..++
T Consensus 59 ~~~~~~~~~-----l~~l~----~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISH-----LQDLK----NGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHH-----HHHHH----CCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22222222 22221 2211111112567777776554 5788999999999999876
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=2.3e-05 Score=94.38 Aligned_cols=188 Identities=16% Similarity=0.240 Sum_probs=110.1
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE--EE---ccC-----CcCcc
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG--FV---GQE-----PQLLQ 524 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~--~V---~Qd-----~~LF~ 524 (680)
.+||.+.++..++|+|+|||||||+++.|++.+....++|.+-+.+-. .+.+-+.+| |+ +-. |+=..
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~---~~~~~~a~gG~y~~i~~~~~~~~NPf~l~ 514 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG---AEIFIRALNGVYTVIEPRLKCNFNPLQLD 514 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC---HHHHHHhcCCEEEEecCCCCcccCCCCCC
Confidence 457888888999999999999999999999988888888887655432 222222221 11 111 22112
Q ss_pred ccHHHHHhc---------CC-CCCCCHHH---HHHHHHHh--------cHHHHHHcCC----------------CC----
Q 005740 525 MDIKSNIMY---------GC-PKDVKNED---IEWAAKQA--------YVHEFILSLP----------------CG---- 563 (680)
Q Consensus 525 gTI~eNI~~---------g~-~~~~s~ee---i~~A~~~a--------~l~dfI~~LP----------------~G---- 563 (680)
+| .+|+.+ .. ....+++| |.+|.+.+ .+.++.+.|+ +|
T Consensus 515 ~~-~~~~~~l~~~l~~l~~~~~~~lt~~~~~~I~~av~~~~~~~~~~rtl~~l~~~l~~~~~~~L~~~L~~~~~~G~~g~ 593 (800)
T PRK13898 515 DT-SENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAGRIAMWHGKGSHAA 593 (800)
T ss_pred CC-hHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhCChhhCcHHHHHHHhCcCCchHHHHHHHHHhcCCCcEE
Confidence 23 233221 10 11234332 33444331 2334433332 11
Q ss_pred -cc---cccC---------C-CCCC-hHHHHHHH-------HHHHHccCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHhc
Q 005740 564 -YE---TLVD---------D-DLLS-GGQKQRIA-------IARAILRDPAILLLDEATSALD-SESEHYVKGVLHALRN 620 (680)
Q Consensus 564 -~d---T~vg---------e-~~LS-GGQrQRIa-------IARAll~~p~ILILDEaTSaLD-~~tE~~I~~~l~~l~~ 620 (680)
+| +.++ | ..|. -.+..... |.+.+-.+|.++++|||...|| +...+.+.+.+++.++
T Consensus 594 ~Fd~~~d~l~~~~~~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK 673 (800)
T PRK13898 594 IFDNEEDLLDFQKARVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK 673 (800)
T ss_pred eecCCccccCCCCCcEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH
Confidence 11 1111 0 0121 12222121 2234567899999999999999 7888899999988874
Q ss_pred cCCCCeEEEEEecCcch----------HhhcCEEEEEeC
Q 005740 621 DCKTKRTVIVIAHRLST----------IKAVDRIVVIDD 649 (680)
Q Consensus 621 ~~~~~~TvIvIaHRlst----------i~~aD~I~vl~~ 649 (680)
.|..++++||.++. +++|+.-+.|-|
T Consensus 674 ---~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 674 ---LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred ---cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 46799999999865 456776566655
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.27 E-value=1.5e-06 Score=85.04 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE-----------CCeeCCCCCHHHhh-----ccEEEEccCCcCccc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWLR-----EKIGFVGQEPQLLQM 525 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i-----------dG~di~~~~~~~LR-----~~I~~V~Qd~~LF~g 525 (680)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.++.. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999988654 65554 77777777776653 358888887655444
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=2.1e-06 Score=99.83 Aligned_cols=109 Identities=26% Similarity=0.284 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCc--------eEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 534 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--------~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g 534 (680)
.+.+.|+||+|+||||+++++.++..+..| -|.+||.++. .+...+. |-.+|
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhcC
Confidence 456999999999999999999999876544 4889887763 3332221 22233
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005740 535 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 614 (680)
Q Consensus 535 ~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 614 (680)
..++...+...+.++..++.++. +..+ ..+||| +|+||| +..||......+.+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~-------~g~v--~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPK-------TGLV--TDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchh-------cCch--hhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 11110011122222333322211 1111 257888 999999 799999999999888
Q ss_pred HHH
Q 005740 615 LHA 617 (680)
Q Consensus 615 l~~ 617 (680)
+++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 865
No 490
>PRK15494 era GTPase Era; Provisional
Probab=98.27 E-value=5.3e-07 Score=97.53 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=50.9
Q ss_pred ccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCc-------EEEEeCCCCCcHHHHHHHHhcC
Q 005740 429 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE-------VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 429 ~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge-------~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+...|++++++|+|+||. +.++++++++++++|+ +++|||++|+|||||++-|.+-
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 456799999999999994 4579999999999999 9999999999999999999875
No 491
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.23 E-value=9.3e-07 Score=97.77 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=72.2
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEE---CCeeCCCCCHHHhh---ccEEEE-----cc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYI---DGFPLTDLDIRWLR---EKIGFV-----GQ 518 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~i---dG~di~~~~~~~LR---~~I~~V-----~Q 518 (680)
.+++++ |++.+||+++|+|+||||||||++.|+|..++ +.|.|.+ +|.++.++..+.++ .+.++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 478888 99999999999999999999999999999844 4467776 55788777766665 235556 89
Q ss_pred CCc------CccccHHHHHhcCCCCCC-----CHHHHHHHHHHhcH
Q 005740 519 EPQ------LLQMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYV 553 (680)
Q Consensus 519 d~~------LF~gTI~eNI~~g~~~~~-----s~eei~~A~~~a~l 553 (680)
+|. .-..+|.|.++.- ..++ +..+..+|++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~-g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQ-GKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHc-CCCcchhhhHHHHHHHHHHHhCc
Confidence 764 3455688888643 1232 23345555555554
No 492
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.21 E-value=2.7e-06 Score=86.87 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=79.8
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhc-CCCC------CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLR-LYEP------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r-~y~p------~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI 531 (680)
=+++|+.+.|+|++||||||++.-++- ...| .++.|++|+.+ ..+.+.+++.. |.......++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 388999999999999999999987763 3344 37899999865 34444444322 11111223567787
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC----CHH-
Q 005740 532 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL----DSE- 606 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL----D~~- 606 (680)
.+.+ ..+.+++.+..+. +.+.+.+- .+++++|+|--++-. +..
T Consensus 89 ~~~~--~~~~~~l~~~l~~--l~~~l~~~----------------------------~~~~liVIDSis~~~~~~~~~~~ 136 (235)
T cd01123 89 YVAR--AYNSDHQLQLLEE--LEAILIES----------------------------SRIKLVIVDSVTALFRAEFDGRG 136 (235)
T ss_pred EEEe--cCCHHHHHHHHHH--HHHHHhhc----------------------------CCeeEEEEeCcHHHHHHHhcCCc
Confidence 7763 2334444333222 22222210 178999999888632 211
Q ss_pred --HH-----HHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 607 --SE-----HYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 607 --tE-----~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
.+ ..+...|+++.++ .+.|++++.|--
T Consensus 137 ~~~~r~~~l~~~~~~L~~la~~--~~~avl~tn~~~ 170 (235)
T cd01123 137 ELAERQQHLAKLLRTLKRLADE--FNVAVVITNQVT 170 (235)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--hCCEEEEeccEe
Confidence 11 2334455555433 367888776643
No 493
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.20 E-value=2e-06 Score=108.20 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=53.3
Q ss_pred CCCChHHHHHHH----HHHH--------HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 571 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 571 ~~LSGGQrQRIa----IARA--------ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
..||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|+++|++
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccch
Confidence 379999999996 6866 55799999999999999999999999999887 57999999998
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.17 E-value=1.2e-06 Score=87.44 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=42.4
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCCCCHHHhhccEEEEccC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~~~~~~LR~~I~~V~Qd 519 (680)
++|+.++|+|+|||||||++++|.+.+.+ ..|.+++||.++++ .+...++|++|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCccc
Confidence 56899999999999999999999997654 45789999987762 233345565555
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.17 E-value=7.5e-07 Score=89.52 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=35.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 524 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~ 524 (680)
++|+.+||+|+||||||||++.|.+++.+ ..+++++||.++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccC
Confidence 57999999999999999999999999763 24667777776654
No 496
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.17 E-value=4.3e-06 Score=92.28 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=70.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--------HHHhhccEEEEccCCc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------IRWLREKIGFVGQEPQ 521 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~--------~~~LR~~I~~V~Qd~~ 521 (680)
..+++++ +++.+|++++|+|+||+|||||+++|.+..+|+.|.|.+.|..-+++. .+.+++.+.++.|-
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~ts-- 201 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATS-- 201 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECC--
Confidence 4689999 999999999999999999999999999999999999999987765532 12233344444331
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccccc
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 568 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v 568 (680)
.+..-+++..+.-..-+.|+... +|.|-.+
T Consensus 202 ---------------d~~~~~r~~~~~~a~tiAEyfr~--~G~~Vll 231 (413)
T TIGR03497 202 ---------------DQPALMRLKAAFTATAIAEYFRD--QGKDVLL 231 (413)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEE
Confidence 12234455555445555677664 4777655
No 497
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.15 E-value=3.4e-06 Score=84.82 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=37.4
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 525 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g 525 (680)
+++..|||+|+||||||||++.|.+.+. ...+++++||.+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCc
Confidence 4678999999999999999999999871 2468889999987754
No 498
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.13 E-value=4.2e-06 Score=89.37 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=69.1
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC---CHHHhhccEEEEccCCcCcccc
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMD 526 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~---~~~~LR~~I~~V~Qd~~LF~gT 526 (680)
..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+..-|.+-+++ ..+.+.+. +-+...++..|
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~---~l~rtvvv~~t 132 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEE---GLKRSVVVVAT 132 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcC---ccceEEEEEcC
Confidence 4699999 99999999999999999999999999999999999888866443333 22222210 00111122111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccC
Q 005740 527 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 569 (680)
Q Consensus 527 I~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vg 569 (680)
..+...+++..+--...+.|+... +|.|-.+=
T Consensus 133 ---------~d~~~~~r~~~~~~a~~~AEyfr~--~g~~Vll~ 164 (326)
T cd01136 133 ---------SDESPLLRVKAAYTATAIAEYFRD--QGKDVLLL 164 (326)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHH--cCCCeEEE
Confidence 112334555555555556677764 58887663
No 499
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.13 E-value=6.5e-06 Score=100.39 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=67.4
Q ss_pred CCChHHHHH------HHHHHHHccC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCE
Q 005740 572 LLSGGQKQR------IAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 643 (680)
Q Consensus 572 ~LSGGQrQR------IaIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~ 643 (680)
+|||||+=. +|||..+-.+ -+.|+|||||.+||+++-..+.++|.++.. .+++|+||||--.....+|.
T Consensus 815 ~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~---~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS---DGRQIIIISHVEELKERADV 891 (908)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHhCCe
Confidence 899999875 4555666677 799999999999999999999999999874 37999999999999999999
Q ss_pred EEEEeCCE
Q 005740 644 IVVIDDGR 651 (680)
Q Consensus 644 I~vl~~G~ 651 (680)
++.++...
T Consensus 892 ~i~V~k~~ 899 (908)
T COG0419 892 RIRVKKDG 899 (908)
T ss_pred EEEEEecC
Confidence 99987543
No 500
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=1.6e-05 Score=73.24 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccC--CCCeEEEEEecCcc
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS 636 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~--~~~~TvIvIaHRls 636 (680)
++.....++...++.++++||+-.. +.+....+.+.+....... ..+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777888899999999998765 5566666777777653210 14578888888654
Done!