Query 005740
Match_columns 680
No_of_seqs 406 out of 2731
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3E-102 1E-106 962.7 71.7 470 202-676 182-654 (1321)
2 4f4c_A Multidrug resistance pr 100.0 2E-101 7E-106 955.2 52.0 555 120-678 740-1319(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-96 4E-101 847.0 68.6 550 122-677 13-580 (587)
4 4a82_A Cystic fibrosis transme 100.0 4E-96 1E-100 841.8 65.0 551 120-676 2-577 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 4.6E-96 2E-100 844.1 63.9 555 116-678 21-593 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 7.6E-94 2.6E-98 823.8 76.1 553 117-676 10-580 (582)
7 2yl4_A ATP-binding cassette SU 100.0 1.2E-93 4.2E-98 824.1 71.9 555 118-677 5-585 (595)
8 3b60_A Lipid A export ATP-bind 100.0 1E-93 3.5E-98 822.7 69.6 553 117-676 10-580 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 1.9E-92 6.5E-97 873.4 59.0 552 120-676 35-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 1.1E-86 3.9E-91 821.9 55.2 553 121-677 694-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.4E-72 4.7E-77 594.9 26.9 275 396-677 15-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1E-59 3.6E-64 483.8 31.2 237 433-675 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 1.3E-58 4.4E-63 479.2 30.0 240 432-677 15-256 (260)
14 2ixe_A Antigen peptide transpo 100.0 2.9E-58 1E-62 479.2 29.4 242 432-676 14-258 (271)
15 1mv5_A LMRA, multidrug resista 100.0 6.8E-59 2.3E-63 476.8 19.5 236 435-676 2-239 (243)
16 2cbz_A Multidrug resistance-as 100.0 1.5E-54 5E-59 442.9 25.1 226 434-676 3-230 (237)
17 3gd7_A Fusion complex of cysti 100.0 8.2E-55 2.8E-59 473.2 24.1 230 431-668 16-248 (390)
18 2pze_A Cystic fibrosis transme 100.0 7.4E-54 2.5E-58 435.5 26.2 220 433-672 5-227 (229)
19 3tui_C Methionine import ATP-b 100.0 2.2E-52 7.7E-57 448.5 23.7 221 433-664 23-254 (366)
20 3gfo_A Cobalt import ATP-bindi 100.0 1.6E-52 5.6E-57 436.1 21.8 224 434-670 7-240 (275)
21 3tif_A Uncharacterized ABC tra 100.0 1.3E-52 4.5E-57 427.9 18.5 218 435-662 2-233 (235)
22 1ji0_A ABC transporter; ATP bi 100.0 3.4E-51 1.2E-55 418.9 25.3 219 434-664 6-229 (240)
23 4g1u_C Hemin import ATP-bindin 100.0 3E-51 1E-55 425.1 22.5 217 434-664 11-238 (266)
24 2olj_A Amino acid ABC transpor 100.0 9E-51 3.1E-55 420.5 22.7 217 434-665 24-250 (263)
25 2bbs_A Cystic fibrosis transme 100.0 1.3E-50 4.4E-55 424.9 23.9 237 408-672 17-256 (290)
26 2yz2_A Putative ABC transporte 100.0 1.8E-50 6.1E-55 419.6 24.2 216 435-665 3-229 (266)
27 1vpl_A ABC transporter, ATP-bi 100.0 2.7E-50 9.1E-55 415.6 23.8 217 432-664 13-236 (256)
28 1b0u_A Histidine permease; ABC 100.0 4.1E-50 1.4E-54 415.9 24.4 217 434-665 6-244 (262)
29 2pcj_A ABC transporter, lipopr 100.0 2.2E-50 7.5E-55 408.7 20.1 210 434-658 4-223 (224)
30 3fvq_A Fe(3+) IONS import ATP- 100.0 2.9E-50 9.9E-55 431.9 21.5 218 434-665 4-230 (359)
31 1g6h_A High-affinity branched- 100.0 4.5E-50 1.5E-54 414.7 21.2 215 434-661 7-240 (257)
32 2qi9_C Vitamin B12 import ATP- 100.0 9.1E-50 3.1E-54 410.0 22.0 217 435-672 5-230 (249)
33 3rlf_A Maltose/maltodextrin im 100.0 5.9E-50 2E-54 432.3 21.4 220 434-669 3-230 (381)
34 2ihy_A ABC transporter, ATP-bi 100.0 4.8E-50 1.7E-54 418.7 19.1 216 434-664 21-253 (279)
35 2onk_A Molybdate/tungstate ABC 100.0 2.2E-49 7.4E-54 405.1 20.3 211 435-665 2-218 (240)
36 2yyz_A Sugar ABC transporter, 100.0 4.8E-49 1.7E-53 423.5 24.1 216 434-665 3-225 (359)
37 1z47_A CYSA, putative ABC-tran 100.0 4.6E-49 1.6E-53 422.7 22.5 217 433-664 13-236 (355)
38 2it1_A 362AA long hypothetical 100.0 3E-49 1E-53 425.5 21.0 216 434-665 3-225 (362)
39 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-49 6.4E-54 408.4 18.2 211 435-660 4-230 (250)
40 1oxx_K GLCV, glucose, ABC tran 100.0 3.5E-49 1.2E-53 424.6 20.2 218 434-665 3-232 (353)
41 1v43_A Sugar-binding transport 100.0 1E-48 3.4E-53 422.9 23.7 216 434-665 11-233 (372)
42 3d31_A Sulfate/molybdate ABC t 100.0 7.2E-49 2.5E-53 420.8 22.1 214 435-665 2-219 (348)
43 1g29_1 MALK, maltose transport 100.0 1.8E-48 6.1E-53 421.6 20.6 216 434-665 3-231 (372)
44 2zu0_C Probable ATP-dependent 100.0 1.4E-47 4.7E-52 398.1 24.7 217 434-663 20-254 (267)
45 2nq2_C Hypothetical ABC transp 100.0 1E-47 3.4E-52 396.0 20.9 204 434-664 4-218 (253)
46 2pjz_A Hypothetical protein ST 100.0 8.1E-48 2.8E-52 398.4 18.2 209 435-664 2-216 (263)
47 1sgw_A Putative ABC transporte 100.0 1.2E-46 4E-51 378.1 13.3 197 433-653 9-211 (214)
48 2v9p_A Replication protein E1; 100.0 6.2E-46 2.1E-50 390.6 -18.9 241 364-676 34-276 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 1.3E-37 4.4E-42 356.8 14.6 203 434-664 357-564 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.7E-37 9.2E-42 349.7 17.0 203 434-663 269-477 (538)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 9.1E-38 3.1E-42 354.2 13.0 200 434-663 287-493 (538)
52 2iw3_A Elongation factor 3A; a 100.0 1.5E-36 5.1E-41 359.4 18.5 195 434-657 671-981 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 4.8E-36 1.6E-40 349.6 13.5 205 450-668 335-645 (670)
54 3ux8_A Excinuclease ABC, A sub 100.0 7.6E-36 2.6E-40 347.9 15.1 205 450-666 31-301 (670)
55 3j16_B RLI1P; ribosome recycli 100.0 9.5E-36 3.3E-40 340.7 14.3 202 438-665 350-561 (608)
56 3bk7_A ABC transporter ATP-bin 100.0 5.1E-36 1.7E-40 343.5 11.3 194 438-650 95-304 (607)
57 1yqt_A RNAse L inhibitor; ATP- 100.0 6.2E-36 2.1E-40 339.2 9.5 197 435-650 21-234 (538)
58 2iw3_A Elongation factor 3A; a 100.0 5.6E-34 1.9E-38 337.5 24.2 199 433-665 434-637 (986)
59 3pih_A Uvrabc system protein A 100.0 1.5E-34 5.3E-39 342.0 18.6 208 451-672 598-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 1.1E-33 3.9E-38 323.6 11.8 197 439-652 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 2.1E-33 7.2E-38 317.8 6.3 193 438-651 3-214 (538)
62 2npi_A Protein CLP1; CLP1-PCF1 100.0 4.3E-36 1.5E-40 333.5 -15.9 192 434-663 118-338 (460)
63 2vf7_A UVRA2, excinuclease ABC 100.0 7E-32 2.4E-36 316.9 17.5 219 433-668 501-832 (842)
64 2r6f_A Excinuclease ABC subuni 100.0 1.9E-31 6.4E-36 313.6 18.3 214 434-670 629-949 (972)
65 4aby_A DNA repair protein RECN 100.0 5.6E-32 1.9E-36 297.5 12.6 207 434-656 42-381 (415)
66 2ygr_A Uvrabc system protein A 100.0 5.5E-31 1.9E-35 310.7 16.7 217 433-672 646-969 (993)
67 1e69_A Chromosome segregation 100.0 2.1E-29 7.3E-34 268.3 13.4 200 455-660 17-310 (322)
68 2pt7_A CAG-ALFA; ATPase, prote 100.0 4.5E-32 1.5E-36 289.7 -16.3 207 369-652 75-292 (330)
69 3b85_A Phosphate starvation-in 99.9 3.6E-30 1.2E-34 257.2 -6.5 159 450-652 13-172 (208)
70 1z6g_A Guanylate kinase; struc 99.9 7.6E-31 2.6E-35 264.1 -11.9 166 451-649 11-193 (218)
71 4gp7_A Metallophosphoesterase; 99.9 2.6E-28 8.9E-33 236.2 1.3 149 455-644 1-168 (171)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.6E-26 2.3E-30 245.4 16.4 80 572-654 279-364 (365)
73 2dpy_A FLII, flagellum-specifi 99.9 7.4E-28 2.5E-32 266.0 -7.4 196 433-663 130-344 (438)
74 1ye8_A Protein THEP1, hypothet 99.9 4.2E-27 1.4E-31 229.4 -2.5 145 465-654 2-159 (178)
75 1tq4_A IIGP1, interferon-induc 99.9 5.5E-27 1.9E-31 256.3 -8.0 171 451-645 37-248 (413)
76 2f1r_A Molybdopterin-guanine d 99.9 4E-27 1.4E-31 228.0 -8.7 111 464-594 3-125 (171)
77 2vf7_A UVRA2, excinuclease ABC 99.9 8.9E-24 3E-28 248.3 12.1 91 571-664 378-476 (842)
78 3aez_A Pantothenate kinase; tr 99.9 5E-27 1.7E-31 248.6 -14.0 182 429-650 38-245 (312)
79 2eyu_A Twitching motility prot 99.9 7.8E-27 2.7E-31 241.2 -15.4 173 451-637 15-242 (261)
80 2ewv_A Twitching motility prot 99.9 1.6E-26 5.6E-31 250.6 -15.3 173 451-637 126-353 (372)
81 2o5v_A DNA replication and rep 99.9 2.3E-22 8E-27 216.3 15.0 82 572-662 265-355 (359)
82 3b9q_A Chloroplast SRP recepto 99.9 2.2E-24 7.6E-29 227.3 -0.8 174 453-653 90-285 (302)
83 3sop_A Neuronal-specific septi 99.9 7.7E-25 2.6E-29 227.3 -5.2 148 465-639 4-154 (270)
84 1lvg_A Guanylate kinase, GMP k 99.9 4.3E-26 1.5E-30 225.9 -15.9 169 460-663 1-183 (198)
85 2gza_A Type IV secretion syste 99.9 5.9E-26 2E-30 245.4 -18.3 220 358-585 52-300 (361)
86 2og2_A Putative signal recogni 99.9 2E-23 6.9E-28 224.3 0.1 173 454-653 148-342 (359)
87 2obl_A ESCN; ATPase, hydrolase 99.9 1.9E-23 6.5E-28 224.1 -0.5 196 433-662 44-254 (347)
88 1znw_A Guanylate kinase, GMP k 99.9 1.6E-24 5.3E-29 215.9 -9.4 172 450-649 9-203 (207)
89 2i3b_A HCR-ntpase, human cance 99.8 2.7E-23 9.3E-28 204.3 -5.0 170 463-673 1-182 (189)
90 3pih_A Uvrabc system protein A 99.8 5.1E-21 1.7E-25 226.7 12.5 162 479-665 384-562 (916)
91 1cr0_A DNA primase/helicase; R 99.8 1.3E-21 4.5E-26 205.2 5.9 183 451-652 23-237 (296)
92 1tf7_A KAIC; homohexamer, hexa 99.8 7.2E-23 2.5E-27 232.0 -4.9 168 450-650 25-210 (525)
93 1lw7_A Transcriptional regulat 99.8 7E-23 2.4E-27 221.7 -8.1 146 452-600 157-329 (365)
94 4ad8_A DNA repair protein RECN 99.8 2.7E-20 9.3E-25 210.5 11.5 75 572-650 396-473 (517)
95 3asz_A Uridine kinase; cytidin 99.8 2.5E-23 8.5E-28 207.0 -12.1 143 460-635 3-161 (211)
96 2jeo_A Uridine-cytidine kinase 99.8 4.2E-22 1.4E-26 203.5 -4.1 168 449-663 11-187 (245)
97 2o8b_B DNA mismatch repair pro 99.8 1.5E-20 5.2E-25 226.2 8.0 174 433-660 749-939 (1022)
98 3qkt_A DNA double-strand break 99.8 3.5E-19 1.2E-23 190.7 15.3 78 572-652 248-333 (339)
99 2r6f_A Excinuclease ABC subuni 99.8 1E-19 3.6E-24 214.2 11.1 152 487-664 432-601 (972)
100 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-20 4.2E-25 213.7 2.2 168 435-651 258-444 (525)
101 1pzn_A RAD51, DNA repair and r 99.8 7.3E-21 2.5E-25 204.6 -0.6 176 438-662 111-314 (349)
102 4a74_A DNA repair and recombin 99.8 5.3E-20 1.8E-24 184.5 2.7 150 459-651 21-201 (231)
103 1w1w_A Structural maintenance 99.8 3.4E-19 1.2E-23 196.9 9.1 74 572-648 333-410 (430)
104 2ygr_A Uvrabc system protein A 99.8 1.6E-18 5.3E-23 205.0 15.1 135 522-664 466-618 (993)
105 1ewq_A DNA mismatch repair pro 99.8 3.1E-19 1.1E-23 208.8 7.0 147 432-641 548-704 (765)
106 1pui_A ENGB, probable GTP-bind 99.8 1.9E-20 6.5E-25 185.2 -2.8 166 435-619 4-197 (210)
107 1odf_A YGR205W, hypothetical 3 99.8 3.1E-21 1.1E-25 202.1 -9.0 128 461-607 29-169 (290)
108 3szr_A Interferon-induced GTP- 99.8 1E-20 3.6E-25 217.4 -5.7 193 434-662 10-236 (608)
109 2ehv_A Hypothetical protein PH 99.8 2.3E-20 7.9E-25 189.6 -2.5 182 434-648 6-206 (251)
110 3thx_A DNA mismatch repair pro 99.8 4.1E-18 1.4E-22 202.7 15.6 169 433-661 630-811 (934)
111 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.1E-18 1.4E-22 160.6 11.7 87 563-652 41-142 (148)
112 1rj9_A FTSY, signal recognitio 99.7 2.3E-19 7.8E-24 189.1 1.5 165 462-651 101-284 (304)
113 2qag_C Septin-7; cell cycle, c 99.7 1.6E-19 5.6E-24 197.8 -1.5 166 433-638 10-180 (418)
114 3jvv_A Twitching mobility prot 99.7 1E-18 3.5E-23 187.9 3.9 147 438-650 92-246 (356)
115 2qnr_A Septin-2, protein NEDD5 99.7 5.3E-19 1.8E-23 186.3 -3.2 164 438-637 2-169 (301)
116 2w0m_A SSO2452; RECA, SSPF, un 99.7 6.4E-18 2.2E-22 169.2 3.8 168 450-651 9-193 (235)
117 3kta_B Chromosome segregation 99.7 9.8E-17 3.3E-21 155.1 10.9 78 572-653 64-147 (173)
118 1s96_A Guanylate kinase, GMP k 99.6 1.1E-17 3.6E-22 168.3 0.0 144 457-664 10-161 (219)
119 2cvh_A DNA repair and recombin 99.6 1.6E-16 5.6E-21 157.9 8.0 152 451-650 7-185 (220)
120 3c8u_A Fructokinase; YP_612366 99.6 1.5E-19 5.1E-24 179.9 -17.0 135 460-618 19-169 (208)
121 2qag_B Septin-6, protein NEDD5 99.6 6.8E-17 2.3E-21 176.5 2.4 178 434-633 16-217 (427)
122 1nij_A Hypothetical protein YJ 99.6 1.2E-18 4.1E-23 184.9 -11.1 151 464-636 5-190 (318)
123 3thx_B DNA mismatch repair pro 99.6 2.2E-16 7.4E-21 187.5 5.6 162 433-644 639-805 (918)
124 1nlf_A Regulatory protein REPA 99.6 6.3E-16 2.1E-20 160.7 6.6 151 459-638 26-184 (279)
125 1zp6_A Hypothetical protein AT 99.6 2.6E-17 8.9E-22 160.5 -5.2 139 459-618 5-147 (191)
126 1wb9_A DNA mismatch repair pro 99.6 4.1E-16 1.4E-20 183.4 3.9 168 433-655 576-750 (800)
127 1n0w_A DNA repair protein RAD5 99.6 1.2E-15 3.9E-20 154.2 6.0 150 459-650 20-209 (243)
128 2yhs_A FTSY, cell division pro 99.5 5.3E-16 1.8E-20 171.6 -0.8 148 453-633 283-447 (503)
129 2qm8_A GTPase/ATPase; G protei 99.5 8.3E-18 2.8E-22 179.9 -15.2 178 435-619 30-259 (337)
130 2bdt_A BH3686; alpha-beta prot 99.5 2.1E-18 7.3E-23 168.4 -22.5 161 463-662 2-183 (189)
131 2oap_1 GSPE-2, type II secreti 99.5 9E-17 3.1E-21 180.6 -13.2 173 451-642 248-458 (511)
132 1htw_A HI0065; nucleotide-bind 99.5 2.7E-15 9.4E-20 142.9 -1.7 89 437-534 10-99 (158)
133 1sxj_E Activator 1 40 kDa subu 99.5 3E-14 1E-18 152.3 6.1 134 465-638 38-177 (354)
134 1p9r_A General secretion pathw 99.5 8.4E-17 2.9E-21 176.4 -14.2 128 452-595 158-314 (418)
135 2rcn_A Probable GTPase ENGC; Y 99.4 2.3E-15 7.8E-20 161.3 -4.2 120 451-587 204-328 (358)
136 3e70_C DPA, signal recognition 99.4 5.1E-14 1.7E-18 149.7 6.1 161 459-653 125-307 (328)
137 2bbw_A Adenylate kinase 4, AK4 99.4 1.8E-15 6.3E-20 154.2 -6.9 136 462-619 26-197 (246)
138 3lda_A DNA repair protein RAD5 99.4 1.5E-13 5.1E-18 149.8 7.1 149 459-651 174-364 (400)
139 3auy_A DNA double-strand break 99.4 5E-13 1.7E-17 144.6 10.4 73 572-648 280-359 (371)
140 2kjq_A DNAA-related protein; s 99.4 3.9E-13 1.3E-17 126.7 6.7 92 452-634 30-124 (149)
141 3lnc_A Guanylate kinase, GMP k 99.3 1.6E-15 5.5E-20 153.0 -14.2 146 451-619 15-177 (231)
142 2yv5_A YJEQ protein; hydrolase 99.3 2.1E-13 7.1E-18 143.6 -0.9 116 458-585 160-300 (302)
143 1cke_A CK, MSSA, protein (cyti 99.3 2.9E-14 1E-18 142.7 -8.0 127 462-601 4-151 (227)
144 2x8a_A Nuclear valosin-contain 99.3 1.1E-14 3.9E-19 151.1 -11.4 143 451-615 34-190 (274)
145 3ec2_A DNA replication protein 99.3 1.5E-12 5.1E-17 125.8 4.2 111 457-636 32-144 (180)
146 1udx_A The GTP-binding protein 99.2 1.1E-12 3.7E-17 143.6 0.3 154 453-633 147-306 (416)
147 1sq5_A Pantothenate kinase; P- 99.2 2E-13 6.8E-18 144.1 -6.6 142 430-605 33-199 (308)
148 1u0l_A Probable GTPase ENGC; p 99.2 4.3E-12 1.5E-16 133.4 1.6 103 458-561 164-289 (301)
149 4e22_A Cytidylate kinase; P-lo 99.2 1E-12 3.6E-17 134.5 -3.2 103 451-564 18-138 (252)
150 1ls1_A Signal recognition part 99.1 3.6E-11 1.2E-15 126.0 7.1 142 435-632 77-219 (295)
151 1vma_A Cell division protein F 99.1 1.6E-11 5.5E-16 129.2 3.2 111 456-617 97-210 (306)
152 3euj_A Chromosome partition pr 99.1 2.3E-11 7.8E-16 135.0 4.3 65 436-506 8-72 (483)
153 2px0_A Flagellar biosynthesis 99.1 1.3E-10 4.5E-15 121.8 7.6 142 461-655 103-247 (296)
154 1iy2_A ATP-dependent metallopr 99.0 3.9E-13 1.3E-17 139.4 -13.9 138 436-600 51-195 (278)
155 1ixz_A ATP-dependent metallopr 99.0 5.1E-13 1.7E-17 136.4 -14.5 140 435-601 26-172 (254)
156 1oix_A RAS-related protein RAB 99.0 2.4E-11 8.1E-16 118.5 -2.3 142 465-617 31-188 (191)
157 3ney_A 55 kDa erythrocyte memb 99.0 6.5E-11 2.2E-15 116.5 0.5 82 458-549 14-108 (197)
158 3a00_A Guanylate kinase, GMP k 99.0 2.6E-11 9E-16 118.0 -2.4 125 463-598 1-169 (186)
159 2ius_A DNA translocase FTSK; n 99.0 1.6E-11 5.6E-16 137.1 -5.1 162 455-636 159-343 (512)
160 3tr0_A Guanylate kinase, GMP k 99.0 1.3E-10 4.4E-15 114.0 1.9 72 457-532 1-73 (205)
161 1t9h_A YLOQ, probable GTPase E 98.9 1.4E-10 4.8E-15 121.8 1.5 96 458-555 168-287 (307)
162 2dr3_A UPF0273 protein PH0284; 98.9 1.8E-10 6.1E-15 116.1 1.8 169 451-649 10-196 (247)
163 1in4_A RUVB, holliday junction 98.9 1.8E-12 6E-17 138.3 -13.6 152 438-619 22-193 (334)
164 2r6a_A DNAB helicase, replicat 98.9 1.8E-09 6.2E-14 119.8 8.8 179 451-653 191-402 (454)
165 1qhl_A Protein (cell division 98.9 5E-11 1.7E-15 120.0 -3.5 75 434-519 9-91 (227)
166 1kgd_A CASK, peripheral plasma 98.9 1.2E-10 4.1E-15 112.7 -0.8 80 462-549 4-94 (180)
167 3k1j_A LON protease, ATP-depen 98.9 7.8E-11 2.7E-15 135.4 -3.7 157 450-617 47-227 (604)
168 2zr9_A Protein RECA, recombina 98.9 5.6E-09 1.9E-13 111.8 10.4 145 459-657 57-237 (349)
169 2qt1_A Nicotinamide riboside k 98.9 3.6E-10 1.2E-14 111.5 0.8 105 456-599 14-118 (207)
170 2dy1_A Elongation factor G; tr 98.8 1.4E-09 4.8E-14 126.2 3.4 75 457-532 3-79 (665)
171 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.2E-11 3.9E-16 134.3 -13.7 170 459-658 16-208 (392)
172 1svm_A Large T antigen; AAA+ f 98.7 7.8E-11 2.7E-15 127.3 -9.0 136 451-601 157-312 (377)
173 2f9l_A RAB11B, member RAS onco 98.7 2.7E-09 9.1E-14 104.3 2.5 136 465-618 7-165 (199)
174 3t34_A Dynamin-related protein 98.7 6.6E-09 2.3E-13 111.7 3.9 47 451-500 25-73 (360)
175 3tau_A Guanylate kinase, GMP k 98.7 1.7E-09 5.7E-14 107.2 -1.3 70 461-534 6-86 (208)
176 2j41_A Guanylate kinase; GMP, 98.6 3.3E-09 1.1E-13 104.0 -0.4 61 458-521 1-61 (207)
177 3nwj_A ATSK2; P loop, shikimat 98.6 3.8E-09 1.3E-13 107.9 -0.5 52 434-487 17-72 (250)
178 3uie_A Adenylyl-sulfate kinase 98.6 1.6E-09 5.6E-14 106.3 -4.4 61 438-502 3-65 (200)
179 3cr8_A Sulfate adenylyltranfer 98.6 3E-09 1E-13 120.3 -3.0 90 458-552 364-468 (552)
180 2qtf_A Protein HFLX, GTP-bindi 98.6 1.3E-08 4.5E-13 109.6 1.8 142 465-619 181-352 (364)
181 3kta_A Chromosome segregation 98.5 8.7E-09 3E-13 99.2 -0.1 66 454-520 18-89 (182)
182 4eun_A Thermoresistant glucoki 98.5 1.1E-08 3.8E-13 100.4 -0.5 60 457-522 23-83 (200)
183 3vaa_A Shikimate kinase, SK; s 98.5 4.5E-08 1.6E-12 95.9 3.5 45 443-487 5-49 (199)
184 2ce7_A Cell division protein F 98.5 2.1E-07 7.1E-12 103.4 9.0 118 451-638 39-167 (476)
185 1zu4_A FTSY; GTPase, signal re 98.5 2.9E-08 9.9E-13 105.0 2.0 69 452-520 94-172 (320)
186 3ice_A Transcription terminati 98.4 2.3E-08 7.9E-13 106.9 -0.1 56 430-487 129-198 (422)
187 2dhr_A FTSH; AAA+ protein, hex 98.4 3.3E-09 1.1E-13 118.6 -7.1 139 437-602 43-188 (499)
188 3hr8_A Protein RECA; alpha and 98.3 2.2E-06 7.5E-11 91.7 12.0 59 459-520 57-116 (356)
189 2vp4_A Deoxynucleoside kinase; 98.3 1.9E-08 6.5E-13 101.1 -4.8 64 457-524 14-87 (230)
190 1jjv_A Dephospho-COA kinase; P 98.3 2E-07 6.9E-12 91.5 2.2 125 465-649 4-132 (206)
191 1uf9_A TT1252 protein; P-loop, 98.3 5.5E-08 1.9E-12 94.8 -2.3 82 463-557 8-93 (203)
192 2z43_A DNA repair and recombin 98.2 3.3E-07 1.1E-11 97.0 2.4 144 459-649 103-289 (324)
193 2xau_A PRE-mRNA-splicing facto 98.2 1.6E-06 5.3E-11 102.3 7.4 65 572-639 190-256 (773)
194 4a1f_A DNAB helicase, replicat 98.1 1.5E-06 5.1E-11 92.4 4.5 103 452-604 35-141 (338)
195 2e87_A Hypothetical protein PH 98.1 3.7E-06 1.2E-10 90.1 7.3 60 572-636 231-293 (357)
196 2ffh_A Protein (FFH); SRP54, s 98.1 6.9E-06 2.3E-10 89.9 9.1 162 435-633 77-246 (425)
197 1knq_A Gluconate kinase; ALFA/ 98.1 6.7E-07 2.3E-11 85.2 0.7 38 461-502 6-43 (175)
198 1rz3_A Hypothetical protein rb 98.0 8.9E-07 3E-11 86.9 1.3 49 459-507 18-66 (201)
199 2eyu_A Twitching motility prot 98.0 1.3E-06 4.6E-11 89.5 2.4 59 580-648 88-146 (261)
200 3tqc_A Pantothenate kinase; bi 97.9 1.4E-06 4.7E-11 92.0 0.2 125 451-605 74-211 (321)
201 2pez_A Bifunctional 3'-phospho 97.9 1.1E-06 3.8E-11 84.2 -1.4 41 461-502 3-45 (179)
202 1v5w_A DMC1, meiotic recombina 97.9 4E-06 1.4E-10 89.4 2.7 28 459-486 118-145 (343)
203 3kl4_A SRP54, signal recogniti 97.9 3.1E-05 1.1E-09 84.8 9.8 41 462-502 96-136 (433)
204 1fnn_A CDC6P, cell division co 97.8 5.7E-05 1.9E-09 80.7 11.2 30 462-491 41-72 (389)
205 3b9p_A CG5977-PA, isoform A; A 97.8 2.9E-05 9.8E-10 80.4 7.7 75 574-648 97-187 (297)
206 3r20_A Cytidylate kinase; stru 97.8 1.4E-06 4.7E-11 87.9 -2.9 70 463-532 9-96 (233)
207 2z4s_A Chromosomal replication 97.8 2.5E-05 8.4E-10 86.1 6.9 66 590-658 194-263 (440)
208 1ega_A Protein (GTP-binding pr 97.7 1.9E-05 6.6E-10 82.5 5.2 148 462-639 7-163 (301)
209 1ypw_A Transitional endoplasmi 97.7 6.9E-06 2.3E-10 97.3 1.9 32 458-489 233-264 (806)
210 3m6a_A ATP-dependent protease 97.7 5.5E-06 1.9E-10 93.8 0.5 79 437-519 86-164 (543)
211 1f6b_A SAR1; gtpases, N-termin 97.7 8.1E-06 2.8E-10 79.4 1.6 58 441-501 6-71 (198)
212 1mky_A Probable GTP-binding pr 97.7 1.8E-05 6.3E-10 87.1 3.9 71 464-534 181-264 (439)
213 3lxx_A GTPase IMAP family memb 97.7 0.00022 7.6E-09 71.3 11.5 28 465-492 31-58 (239)
214 2qby_A CDC6 homolog 1, cell di 97.6 1.7E-05 6E-10 84.3 3.2 32 461-492 43-74 (386)
215 1m7g_A Adenylylsulfate kinase; 97.6 5.7E-06 1.9E-10 81.6 -0.6 44 458-501 20-65 (211)
216 1kag_A SKI, shikimate kinase I 97.6 2E-05 6.7E-10 74.6 2.8 33 462-498 3-35 (173)
217 1lv7_A FTSH; alpha/beta domain 97.6 0.00024 8.1E-09 71.9 10.9 45 452-500 36-80 (257)
218 1l8q_A Chromosomal replication 97.6 6.4E-05 2.2E-09 78.9 6.6 29 462-490 36-64 (324)
219 2qor_A Guanylate kinase; phosp 97.6 8.5E-06 2.9E-10 79.9 -0.2 69 459-530 8-87 (204)
220 4eaq_A DTMP kinase, thymidylat 97.6 1.6E-05 5.4E-10 79.8 1.7 44 453-497 13-59 (229)
221 2p67_A LAO/AO transport system 97.6 8.3E-06 2.8E-10 86.8 -0.4 53 451-503 44-96 (341)
222 2jaq_A Deoxyguanosine kinase; 97.5 3.5E-06 1.2E-10 81.8 -4.0 70 465-534 2-87 (205)
223 2q6t_A DNAB replication FORK h 97.5 0.00019 6.3E-09 79.1 9.4 174 451-648 188-396 (444)
224 3llm_A ATP-dependent RNA helic 97.5 6.8E-05 2.3E-09 75.1 5.3 121 460-617 73-204 (235)
225 3bh0_A DNAB-like replicative h 97.5 2.1E-05 7.3E-10 82.7 0.7 104 451-602 56-163 (315)
226 1m2o_B GTP-binding protein SAR 97.4 6.9E-05 2.4E-09 72.2 4.0 50 451-501 12-69 (190)
227 2www_A Methylmalonic aciduria 97.4 3.4E-05 1.2E-09 82.3 1.5 44 461-504 72-115 (349)
228 2gj8_A MNME, tRNA modification 97.4 0.00011 3.7E-09 69.7 4.1 27 461-487 2-28 (172)
229 1u94_A RECA protein, recombina 97.3 0.00074 2.5E-08 72.2 11.0 47 451-498 49-99 (356)
230 3h4m_A Proteasome-activating n 97.3 0.00053 1.8E-08 70.2 8.6 28 460-487 48-75 (285)
231 3bos_A Putative DNA replicatio 97.3 0.00013 4.4E-09 72.1 3.8 27 462-488 51-77 (242)
232 3cf0_A Transitional endoplasmi 97.3 0.00042 1.4E-08 72.1 7.7 32 457-488 43-74 (301)
233 1j8m_F SRP54, signal recogniti 97.2 5E-05 1.7E-09 79.3 -0.4 62 437-504 77-139 (297)
234 1sxj_C Activator 1 40 kDa subu 97.2 1.6E-05 5.6E-10 84.2 -4.3 68 451-518 32-102 (340)
235 1y63_A LMAJ004144AAA protein; 97.2 0.00018 6E-09 69.2 3.3 32 455-486 2-33 (184)
236 2w58_A DNAI, primosome compone 97.1 0.00039 1.3E-08 67.4 5.3 27 464-490 55-81 (202)
237 2p5t_B PEZT; postsegregational 97.1 0.00012 4.2E-09 74.2 1.6 42 459-502 28-69 (253)
238 2qag_A Septin-2, protein NEDD5 97.1 4.6E-05 1.6E-09 81.8 -1.8 59 431-498 14-72 (361)
239 4dcu_A GTP-binding protein ENG 97.1 0.00057 1.9E-08 75.5 6.7 58 575-639 87-145 (456)
240 3t61_A Gluconokinase; PSI-biol 97.0 0.00014 4.9E-09 70.7 1.2 34 463-500 18-51 (202)
241 2yvu_A Probable adenylyl-sulfa 97.0 0.00016 5.5E-09 69.3 1.5 40 459-498 9-49 (186)
242 1sxj_D Activator 1 41 kDa subu 97.0 0.00014 4.6E-09 76.8 0.6 38 451-488 44-83 (353)
243 4fcw_A Chaperone protein CLPB; 97.0 0.00079 2.7E-08 69.7 6.2 31 463-493 47-77 (311)
244 2wji_A Ferrous iron transport 97.0 0.00064 2.2E-08 63.5 5.0 25 464-488 4-28 (165)
245 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00047 1.6E-08 64.2 3.9 30 454-484 15-44 (149)
246 2i1q_A DNA repair and recombin 96.9 0.00022 7.6E-09 74.9 1.9 27 459-485 94-120 (322)
247 1ly1_A Polynucleotide kinase; 96.9 0.002 6.7E-08 60.7 8.1 31 464-497 3-33 (181)
248 1njg_A DNA polymerase III subu 96.9 0.00017 5.7E-09 70.8 0.5 45 589-638 125-169 (250)
249 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00044 1.5E-08 74.8 3.5 41 459-499 18-69 (396)
250 3uk6_A RUVB-like 2; hexameric 96.9 0.0009 3.1E-08 71.1 5.9 40 461-500 68-107 (368)
251 2wjg_A FEOB, ferrous iron tran 96.9 0.00049 1.7E-08 65.3 3.5 23 464-486 8-30 (188)
252 1np6_A Molybdopterin-guanine d 96.8 0.00037 1.3E-08 66.8 2.3 39 463-501 6-47 (174)
253 3lxw_A GTPase IMAP family memb 96.8 0.00095 3.2E-08 67.4 5.0 63 574-637 86-151 (247)
254 2if2_A Dephospho-COA kinase; a 96.7 0.00069 2.4E-08 65.7 3.3 21 465-485 3-23 (204)
255 2zej_A Dardarin, leucine-rich 96.7 0.00072 2.5E-08 64.4 3.4 26 465-490 4-29 (184)
256 3ihw_A Centg3; RAS, centaurin, 96.7 0.0013 4.5E-08 62.7 5.3 36 465-500 22-66 (184)
257 3n70_A Transport activator; si 96.7 0.0043 1.5E-07 57.0 8.3 29 461-489 22-50 (145)
258 1lw7_A Transcriptional regulat 96.7 2.5E-05 8.5E-10 83.8 -8.0 88 572-663 258-355 (365)
259 1ex7_A Guanylate kinase; subst 96.7 0.00046 1.6E-08 66.9 1.7 74 465-548 3-89 (186)
260 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0092 3.1E-07 59.8 11.3 27 461-487 37-63 (262)
261 2dby_A GTP-binding protein; GD 96.6 0.00033 1.1E-08 75.2 0.4 59 465-555 3-61 (368)
262 1qhx_A CPT, protein (chloramph 96.6 0.00099 3.4E-08 63.0 3.5 26 463-488 3-28 (178)
263 4ag6_A VIRB4 ATPase, type IV s 96.6 0.00072 2.5E-08 73.0 2.7 59 589-650 261-335 (392)
264 3cm0_A Adenylate kinase; ATP-b 96.6 0.00083 2.8E-08 64.0 2.8 27 461-487 2-28 (186)
265 1gtv_A TMK, thymidylate kinase 96.6 0.00027 9.2E-09 69.0 -0.8 87 465-571 2-95 (214)
266 2v1u_A Cell division control p 96.6 0.00086 2.9E-08 71.2 3.0 28 461-488 42-69 (387)
267 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00041 1.4E-08 73.7 0.4 37 451-487 10-48 (359)
268 1xp8_A RECA protein, recombina 96.5 0.0061 2.1E-07 65.3 9.1 27 459-485 70-96 (366)
269 3kb2_A SPBC2 prophage-derived 96.5 0.0012 4E-08 61.8 3.1 23 465-487 3-25 (173)
270 3d8b_A Fidgetin-like protein 1 96.5 0.0084 2.9E-07 63.8 10.1 27 461-487 115-141 (357)
271 1ko7_A HPR kinase/phosphatase; 96.5 0.001 3.5E-08 69.6 2.8 47 451-498 133-183 (314)
272 2v54_A DTMP kinase, thymidylat 96.4 0.0017 5.7E-08 62.8 3.7 26 462-487 3-28 (204)
273 3trf_A Shikimate kinase, SK; a 96.4 0.0015 5E-08 62.2 3.3 26 462-487 4-29 (185)
274 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 61.8 3.5 27 462-488 2-28 (192)
275 1vht_A Dephospho-COA kinase; s 96.3 0.002 6.8E-08 63.2 3.9 32 462-498 3-34 (218)
276 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.017 5.7E-07 60.6 11.2 28 460-487 42-69 (322)
277 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0046 1.6E-07 64.8 6.7 28 458-485 118-145 (331)
278 1fzq_A ADP-ribosylation factor 96.3 0.0016 5.4E-08 61.9 2.8 29 464-492 17-49 (181)
279 3t15_A Ribulose bisphosphate c 96.3 0.0065 2.2E-07 62.9 7.7 26 462-487 35-60 (293)
280 1gvn_B Zeta; postsegregational 96.3 0.002 6.9E-08 66.6 3.7 35 462-498 32-66 (287)
281 3qks_A DNA double-strand break 96.3 0.0024 8.1E-08 62.5 3.9 30 454-484 15-44 (203)
282 2ewv_A Twitching motility prot 96.3 0.0014 4.9E-08 70.4 2.5 57 580-646 199-255 (372)
283 1q3t_A Cytidylate kinase; nucl 96.3 0.002 7E-08 64.2 3.4 36 460-495 13-51 (236)
284 3lw7_A Adenylate kinase relate 96.3 0.002 6.9E-08 60.0 3.2 19 465-483 3-21 (179)
285 2rhm_A Putative kinase; P-loop 96.3 0.0017 5.8E-08 62.0 2.7 27 461-487 3-29 (193)
286 1jal_A YCHF protein; nucleotid 96.2 0.0033 1.1E-07 67.1 4.9 36 463-498 2-48 (363)
287 3syl_A Protein CBBX; photosynt 96.2 0.033 1.1E-06 57.2 12.5 26 462-487 66-91 (309)
288 3iij_A Coilin-interacting nucl 96.2 0.0016 5.6E-08 61.7 2.1 27 461-487 9-35 (180)
289 2c95_A Adenylate kinase 1; tra 96.1 0.0022 7.6E-08 61.4 2.8 27 461-487 7-33 (196)
290 2qp9_X Vacuolar protein sortin 96.1 0.013 4.4E-07 62.4 8.9 27 461-487 82-108 (355)
291 2wwf_A Thymidilate kinase, put 96.1 0.0025 8.6E-08 61.9 3.1 27 461-487 8-34 (212)
292 2chg_A Replication factor C sm 96.1 0.0083 2.8E-07 57.7 6.7 23 465-487 40-62 (226)
293 1xjc_A MOBB protein homolog; s 96.1 0.0017 5.9E-08 61.8 1.7 36 464-499 5-43 (169)
294 2plr_A DTMP kinase, probable t 96.1 0.0028 9.7E-08 61.3 3.3 28 462-489 3-30 (213)
295 3cmw_A Protein RECA, recombina 96.1 0.017 5.9E-07 72.6 11.0 40 459-498 728-768 (1706)
296 2bwj_A Adenylate kinase 5; pho 96.0 0.0012 3.9E-08 63.6 0.2 29 459-487 8-36 (199)
297 1nn5_A Similar to deoxythymidy 96.0 0.003 1E-07 61.4 3.2 28 460-487 6-33 (215)
298 1via_A Shikimate kinase; struc 96.0 0.0028 9.5E-08 59.9 2.8 23 465-487 6-28 (175)
299 3dm5_A SRP54, signal recogniti 96.0 0.045 1.5E-06 59.8 12.6 35 462-496 99-133 (443)
300 1tev_A UMP-CMP kinase; ploop, 95.9 0.0039 1.3E-07 59.4 3.2 101 462-580 2-103 (196)
301 2ze6_A Isopentenyl transferase 95.9 0.0036 1.2E-07 63.4 3.0 24 464-487 2-25 (253)
302 1nks_A Adenylate kinase; therm 95.8 0.0039 1.3E-07 59.3 2.8 24 465-488 3-26 (194)
303 2b8t_A Thymidine kinase; deoxy 95.8 0.0065 2.2E-07 60.4 4.5 51 590-648 89-150 (223)
304 1d2n_A N-ethylmaleimide-sensit 95.8 0.012 4.3E-07 59.6 6.6 26 461-486 62-87 (272)
305 2fn4_A P23, RAS-related protei 95.7 0.0074 2.5E-07 56.2 4.5 22 465-486 11-32 (181)
306 2vli_A Antibiotic resistance p 95.7 0.0036 1.2E-07 59.2 2.3 27 461-487 3-29 (183)
307 3co5_A Putative two-component 95.7 0.012 4.2E-07 53.8 5.9 28 461-488 25-52 (143)
308 2lkc_A Translation initiation 95.7 0.0098 3.4E-07 55.4 5.3 25 461-485 6-30 (178)
309 3cbq_A GTP-binding protein REM 95.7 0.0039 1.3E-07 60.1 2.5 22 465-486 25-46 (195)
310 1aky_A Adenylate kinase; ATP:A 95.7 0.0057 2E-07 60.1 3.6 27 461-487 2-28 (220)
311 2erx_A GTP-binding protein DI- 95.7 0.0096 3.3E-07 54.9 4.9 21 465-485 5-25 (172)
312 3zvl_A Bifunctional polynucleo 95.7 0.041 1.4E-06 59.8 10.7 35 460-498 255-289 (416)
313 3fb4_A Adenylate kinase; psych 95.6 0.0051 1.7E-07 60.1 3.1 23 465-487 2-24 (216)
314 2iyv_A Shikimate kinase, SK; t 95.6 0.0048 1.7E-07 58.6 2.7 25 463-487 2-26 (184)
315 1ltq_A Polynucleotide kinase; 95.6 0.031 1.1E-06 57.4 9.0 23 464-486 3-25 (301)
316 2cdn_A Adenylate kinase; phosp 95.6 0.0062 2.1E-07 58.8 3.5 25 463-487 20-44 (201)
317 2z0h_A DTMP kinase, thymidylat 95.6 0.0059 2E-07 58.4 3.2 24 465-488 2-25 (197)
318 2zan_A Vacuolar protein sortin 95.6 0.034 1.2E-06 61.0 9.7 27 461-487 165-191 (444)
319 3ake_A Cytidylate kinase; CMP 95.6 0.0057 2E-07 59.0 3.1 23 465-487 4-26 (208)
320 3dl0_A Adenylate kinase; phosp 95.5 0.005 1.7E-07 60.2 2.6 23 465-487 2-24 (216)
321 1ukz_A Uridylate kinase; trans 95.5 0.0051 1.8E-07 59.4 2.6 25 463-487 15-39 (203)
322 1e6c_A Shikimate kinase; phosp 95.5 0.0059 2E-07 57.1 3.0 24 464-487 3-26 (173)
323 2pt5_A Shikimate kinase, SK; a 95.5 0.0067 2.3E-07 56.5 3.3 23 465-487 2-24 (168)
324 1zuh_A Shikimate kinase; alpha 95.5 0.007 2.4E-07 56.6 3.4 25 463-487 7-31 (168)
325 1zd8_A GTP:AMP phosphotransfer 95.5 0.0062 2.1E-07 60.2 3.1 27 461-487 5-31 (227)
326 2ew1_A RAS-related protein RAB 95.5 0.01 3.5E-07 57.5 4.5 21 465-485 28-48 (201)
327 2pbr_A DTMP kinase, thymidylat 95.4 0.0069 2.4E-07 57.6 3.1 23 465-487 2-24 (195)
328 2grj_A Dephospho-COA kinase; T 95.4 0.0072 2.5E-07 58.6 3.2 24 464-487 13-36 (192)
329 1zak_A Adenylate kinase; ATP:A 95.4 0.0062 2.1E-07 59.9 2.7 27 462-488 4-30 (222)
330 1q57_A DNA primase/helicase; d 95.4 0.022 7.4E-07 63.5 7.3 36 452-487 231-266 (503)
331 1qf9_A UMP/CMP kinase, protein 95.4 0.0068 2.3E-07 57.5 2.8 25 463-487 6-30 (194)
332 1a7j_A Phosphoribulokinase; tr 95.3 0.0041 1.4E-07 64.4 1.3 26 462-487 4-29 (290)
333 1ksh_A ARF-like protein 2; sma 95.3 0.016 5.6E-07 54.5 5.3 25 461-485 16-40 (186)
334 1uj2_A Uridine-cytidine kinase 95.3 0.0075 2.6E-07 60.7 3.1 24 464-487 23-46 (252)
335 3tlx_A Adenylate kinase 2; str 95.3 0.0083 2.9E-07 60.2 3.3 26 462-487 28-53 (243)
336 1z2a_A RAS-related protein RAB 95.3 0.0082 2.8E-07 55.2 3.1 22 465-486 7-28 (168)
337 1z0j_A RAB-22, RAS-related pro 95.3 0.012 4.2E-07 54.1 4.2 23 465-487 8-30 (170)
338 3eie_A Vacuolar protein sortin 95.3 0.017 5.8E-07 60.4 5.7 26 461-486 49-74 (322)
339 3q72_A GTP-binding protein RAD 95.2 0.0077 2.6E-07 55.4 2.6 23 465-487 4-26 (166)
340 2nzj_A GTP-binding protein REM 95.2 0.0098 3.3E-07 55.1 3.3 23 465-487 6-28 (175)
341 1upt_A ARL1, ADP-ribosylation 95.2 0.019 6.6E-07 52.8 5.3 23 463-485 7-29 (171)
342 1kao_A RAP2A; GTP-binding prot 95.2 0.0095 3.2E-07 54.5 3.1 21 465-485 5-25 (167)
343 2oil_A CATX-8, RAS-related pro 95.2 0.012 4.2E-07 55.9 4.0 21 465-485 27-47 (193)
344 1r2q_A RAS-related protein RAB 95.2 0.013 4.6E-07 53.7 4.2 21 465-485 8-28 (170)
345 3clv_A RAB5 protein, putative; 95.2 0.012 4.2E-07 55.7 4.0 22 465-486 9-30 (208)
346 3q85_A GTP-binding protein REM 95.2 0.01 3.5E-07 54.8 3.3 23 465-487 4-26 (169)
347 2ged_A SR-beta, signal recogni 95.1 0.0098 3.3E-07 56.5 3.1 25 463-487 48-72 (193)
348 3pfi_A Holliday junction ATP-d 95.1 0.056 1.9E-06 56.4 9.2 25 464-488 56-80 (338)
349 3a8t_A Adenylate isopentenyltr 95.1 0.011 3.9E-07 62.2 3.8 27 462-488 39-65 (339)
350 1u8z_A RAS-related protein RAL 95.1 0.01 3.5E-07 54.3 3.1 21 465-485 6-26 (168)
351 2dyk_A GTP-binding protein; GT 95.1 0.011 3.6E-07 54.1 3.1 23 465-487 3-25 (161)
352 3iby_A Ferrous iron transport 95.1 0.0098 3.3E-07 60.3 3.1 23 465-487 3-25 (256)
353 1jr3_A DNA polymerase III subu 95.1 0.032 1.1E-06 58.9 7.2 38 453-490 25-65 (373)
354 3t1o_A Gliding protein MGLA; G 95.1 0.01 3.6E-07 56.1 3.1 25 465-489 16-40 (198)
355 2bcg_Y Protein YP2, GTP-bindin 95.1 0.018 6.2E-07 55.3 4.9 35 465-499 10-55 (206)
356 1c1y_A RAS-related protein RAP 95.1 0.011 3.7E-07 54.3 3.1 21 465-485 5-25 (167)
357 2ce2_X GTPase HRAS; signaling 95.0 0.0096 3.3E-07 54.3 2.7 22 465-486 5-26 (166)
358 1z08_A RAS-related protein RAB 95.0 0.011 3.8E-07 54.5 3.1 22 465-486 8-29 (170)
359 1m7b_A RND3/RHOE small GTP-bin 95.0 0.015 5.2E-07 54.9 4.1 29 465-493 9-42 (184)
360 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.012 4E-07 59.7 3.4 27 461-487 2-28 (260)
361 3k53_A Ferrous iron transport 95.0 0.0099 3.4E-07 60.5 2.9 24 465-488 5-28 (271)
362 1ky3_A GTP-binding protein YPT 95.0 0.012 3.9E-07 54.9 3.1 22 465-486 10-31 (182)
363 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.012 4E-07 54.8 3.1 22 465-486 9-30 (177)
364 1ek0_A Protein (GTP-binding pr 95.0 0.012 4E-07 54.2 3.1 22 465-486 5-26 (170)
365 2f6r_A COA synthase, bifunctio 95.0 0.01 3.4E-07 61.1 2.9 23 463-485 75-97 (281)
366 2qmh_A HPR kinase/phosphorylas 95.0 0.016 5.6E-07 56.4 4.2 36 451-487 23-58 (205)
367 1g16_A RAS-related protein SEC 95.0 0.01 3.5E-07 54.6 2.7 22 465-486 5-26 (170)
368 3bgw_A DNAB-like replicative h 95.0 0.066 2.3E-06 58.7 9.5 34 452-485 186-219 (444)
369 3t5d_A Septin-7; GTP-binding p 94.9 0.01 3.4E-07 60.6 2.7 22 465-486 10-31 (274)
370 3tw8_B RAS-related protein RAB 94.9 0.012 4.1E-07 54.8 3.1 22 465-486 11-32 (181)
371 3hu3_A Transitional endoplasmi 94.9 0.092 3.1E-06 58.3 10.7 28 460-487 235-262 (489)
372 1svi_A GTP-binding protein YSX 94.8 0.011 3.9E-07 56.0 2.7 24 463-486 23-46 (195)
373 3be4_A Adenylate kinase; malar 94.8 0.013 4.3E-07 57.6 3.0 26 462-487 4-29 (217)
374 4dsu_A GTPase KRAS, isoform 2B 94.8 0.014 4.7E-07 54.9 3.1 22 465-486 6-27 (189)
375 2h92_A Cytidylate kinase; ross 94.8 0.011 3.8E-07 57.8 2.5 25 463-487 3-27 (219)
376 3pqc_A Probable GTP-binding pr 94.8 0.012 4.1E-07 55.6 2.7 23 465-487 25-47 (195)
377 3bc1_A RAS-related protein RAB 94.8 0.014 4.7E-07 55.0 3.1 21 465-485 13-33 (195)
378 3kkq_A RAS-related protein M-R 94.7 0.025 8.6E-07 52.9 4.8 21 465-485 20-40 (183)
379 2hxs_A RAB-26, RAS-related pro 94.7 0.016 5.5E-07 53.9 3.4 22 465-486 8-29 (178)
380 3b1v_A Ferrous iron uptake tra 94.7 0.015 5.1E-07 59.6 3.3 23 465-487 5-27 (272)
381 3t5g_A GTP-binding protein RHE 94.7 0.023 7.9E-07 53.1 4.5 29 465-493 8-41 (181)
382 2axn_A 6-phosphofructo-2-kinas 94.7 0.013 4.4E-07 65.7 3.1 45 462-513 34-78 (520)
383 4bas_A ADP-ribosylation factor 94.7 0.02 6.9E-07 54.4 4.0 29 464-492 18-52 (199)
384 1r8s_A ADP-ribosylation factor 94.7 0.015 5.2E-07 53.3 3.1 21 465-485 2-22 (164)
385 2gf0_A GTP-binding protein DI- 94.7 0.022 7.7E-07 54.0 4.3 21 465-485 10-30 (199)
386 1e4v_A Adenylate kinase; trans 94.7 0.014 4.7E-07 57.0 2.8 23 465-487 2-24 (214)
387 1ypw_A Transitional endoplasmi 94.7 0.0016 5.5E-08 77.0 -4.6 63 455-519 503-565 (806)
388 2g6b_A RAS-related protein RAB 94.7 0.016 5.3E-07 54.1 3.1 21 465-485 12-32 (180)
389 2cxx_A Probable GTP-binding pr 94.6 0.014 4.7E-07 55.0 2.7 22 465-486 3-24 (190)
390 3vfd_A Spastin; ATPase, microt 94.6 0.11 3.7E-06 55.7 10.1 27 461-487 146-172 (389)
391 3cmw_A Protein RECA, recombina 94.6 0.1 3.5E-06 65.8 11.0 35 451-486 369-406 (1706)
392 2fg5_A RAB-22B, RAS-related pr 94.6 0.021 7.3E-07 54.3 3.9 28 465-492 25-57 (192)
393 2efe_B Small GTP-binding prote 94.6 0.017 5.8E-07 53.9 3.1 22 465-486 14-35 (181)
394 2y8e_A RAB-protein 6, GH09086P 94.6 0.015 5.1E-07 54.0 2.7 21 465-485 16-36 (179)
395 2g3y_A GTP-binding protein GEM 94.6 0.031 1E-06 54.8 5.1 22 465-486 39-60 (211)
396 2xb4_A Adenylate kinase; ATP-b 94.6 0.017 6E-07 56.9 3.3 23 465-487 2-24 (223)
397 1gwn_A RHO-related GTP-binding 94.5 0.023 7.9E-07 55.1 4.1 29 465-493 30-63 (205)
398 3exa_A TRNA delta(2)-isopenten 94.5 0.019 6.7E-07 59.8 3.7 26 463-488 3-28 (322)
399 1z0f_A RAB14, member RAS oncog 94.5 0.017 6E-07 53.5 3.1 22 465-486 17-38 (179)
400 2fv8_A H6, RHO-related GTP-bin 94.5 0.0084 2.9E-07 58.0 0.8 35 452-486 14-48 (207)
401 3con_A GTPase NRAS; structural 94.5 0.018 6.1E-07 54.4 3.1 22 465-486 23-44 (190)
402 2a9k_A RAS-related protein RAL 94.5 0.018 6.2E-07 53.8 3.1 21 465-485 20-40 (187)
403 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.1E-07 56.7 3.6 26 462-487 15-40 (233)
404 3d3q_A TRNA delta(2)-isopenten 94.5 0.017 5.8E-07 61.0 3.1 25 464-488 8-32 (340)
405 3auy_A DNA double-strand break 94.5 0.02 6.8E-07 61.2 3.7 31 453-484 16-46 (371)
406 2atv_A RERG, RAS-like estrogen 94.4 0.031 1.1E-06 53.2 4.6 23 464-486 29-51 (196)
407 3reg_A RHO-like small GTPase; 94.4 0.03 1E-06 53.2 4.5 22 465-486 25-46 (194)
408 2gf9_A RAS-related protein RAB 94.4 0.02 6.7E-07 54.3 3.1 22 465-486 24-45 (189)
409 1wf3_A GTP-binding protein; GT 94.4 0.019 6.7E-07 59.6 3.3 22 465-486 9-30 (301)
410 1vg8_A RAS-related protein RAB 94.4 0.02 6.8E-07 54.9 3.1 22 465-486 10-31 (207)
411 3cmu_A Protein RECA, recombina 94.4 0.11 3.7E-06 66.4 10.5 47 452-498 370-419 (2050)
412 3v9p_A DTMP kinase, thymidylat 94.4 0.018 6.1E-07 57.4 2.8 28 461-488 23-50 (227)
413 1zd9_A ADP-ribosylation factor 94.4 0.026 9E-07 53.4 3.9 21 465-485 24-44 (188)
414 2xtp_A GTPase IMAP family memb 94.3 0.018 6.3E-07 57.8 2.9 23 464-486 23-45 (260)
415 3tmk_A Thymidylate kinase; pho 94.3 0.019 6.6E-07 56.7 3.0 29 461-489 3-31 (216)
416 2bov_A RAla, RAS-related prote 94.3 0.02 6.9E-07 54.7 3.1 29 465-493 16-49 (206)
417 1jbk_A CLPB protein; beta barr 94.3 0.023 7.9E-07 53.1 3.4 28 461-488 41-68 (195)
418 2bme_A RAB4A, RAS-related prot 94.3 0.019 6.4E-07 53.9 2.7 22 465-486 12-33 (186)
419 4edh_A DTMP kinase, thymidylat 94.3 0.023 7.7E-07 56.0 3.4 29 461-489 4-32 (213)
420 2cjw_A GTP-binding protein GEM 94.3 0.021 7.3E-07 54.6 3.1 21 465-485 8-28 (192)
421 3tqf_A HPR(Ser) kinase; transf 94.3 0.028 9.7E-07 53.5 3.8 33 452-485 6-38 (181)
422 1z06_A RAS-related protein RAB 94.3 0.022 7.5E-07 53.9 3.1 21 465-485 22-42 (189)
423 3tkl_A RAS-related protein RAB 94.3 0.021 7.4E-07 54.0 3.1 22 465-486 18-39 (196)
424 1moz_A ARL1, ADP-ribosylation 94.2 0.014 4.7E-07 54.7 1.6 24 462-485 17-40 (183)
425 1nrj_B SR-beta, signal recogni 94.2 0.021 7.3E-07 55.3 3.1 24 464-487 13-36 (218)
426 1zbd_A Rabphilin-3A; G protein 94.2 0.023 7.8E-07 54.4 3.3 22 465-486 10-31 (203)
427 4dhe_A Probable GTP-binding pr 94.2 0.013 4.3E-07 57.2 1.3 25 463-487 29-53 (223)
428 4b4t_K 26S protease regulatory 94.2 0.25 8.5E-06 53.8 11.7 29 459-487 202-230 (428)
429 1sxj_B Activator 1 37 kDa subu 94.2 0.052 1.8E-06 55.8 6.1 22 466-487 45-66 (323)
430 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.022 7.7E-07 53.2 3.1 21 465-485 7-27 (186)
431 2qu8_A Putative nucleolar GTP- 94.2 0.023 7.9E-07 55.8 3.2 23 464-486 30-52 (228)
432 2il1_A RAB12; G-protein, GDP, 94.1 0.023 7.8E-07 54.2 3.0 21 465-485 28-48 (192)
433 1p5z_B DCK, deoxycytidine kina 94.1 0.016 5.3E-07 58.7 1.9 29 460-488 21-49 (263)
434 3oes_A GTPase rhebl1; small GT 94.1 0.021 7.2E-07 54.8 2.7 23 464-486 25-47 (201)
435 3llu_A RAS-related GTP-binding 94.1 0.023 7.8E-07 54.3 2.9 24 465-488 22-45 (196)
436 3u61_B DNA polymerase accessor 94.1 0.048 1.6E-06 56.6 5.6 43 590-637 105-148 (324)
437 3iev_A GTP-binding protein ERA 94.1 0.024 8.2E-07 59.0 3.3 23 464-486 11-33 (308)
438 2a5j_A RAS-related protein RAB 94.1 0.025 8.4E-07 53.7 3.1 22 465-486 23-44 (191)
439 3ld9_A DTMP kinase, thymidylat 94.1 0.027 9.1E-07 56.0 3.4 28 461-488 19-46 (223)
440 4b4t_L 26S protease subunit RP 94.1 0.077 2.6E-06 58.0 7.3 29 459-487 211-239 (437)
441 3lv8_A DTMP kinase, thymidylat 94.0 0.025 8.6E-07 56.7 3.2 27 462-488 26-52 (236)
442 3pxi_A Negative regulator of g 94.0 0.1 3.6E-06 61.0 9.0 23 465-487 523-545 (758)
443 3dz8_A RAS-related protein RAB 94.0 0.023 7.7E-07 54.0 2.7 22 465-486 25-46 (191)
444 3bwd_D RAC-like GTP-binding pr 94.0 0.029 9.9E-07 52.3 3.4 23 463-485 8-30 (182)
445 1sky_E F1-ATPase, F1-ATP synth 94.0 0.012 4E-07 64.8 0.7 41 452-493 141-181 (473)
446 3crm_A TRNA delta(2)-isopenten 94.0 0.025 8.6E-07 59.3 3.1 25 464-488 6-30 (323)
447 2ocp_A DGK, deoxyguanosine kin 94.0 0.024 8.3E-07 56.4 2.9 27 462-488 1-27 (241)
448 4tmk_A Protein (thymidylate ki 94.0 0.028 9.5E-07 55.4 3.3 27 462-488 2-28 (213)
449 3umf_A Adenylate kinase; rossm 93.9 0.016 5.6E-07 57.3 1.5 115 459-597 25-140 (217)
450 3i8s_A Ferrous iron transport 93.9 0.025 8.5E-07 57.8 2.9 23 465-487 5-27 (274)
451 1x3s_A RAS-related protein RAB 93.9 0.027 9.4E-07 53.1 3.1 23 464-486 16-38 (195)
452 2o52_A RAS-related protein RAB 93.9 0.026 8.9E-07 54.2 2.9 21 465-485 27-47 (200)
453 3cph_A RAS-related protein SEC 93.9 0.027 9.3E-07 54.1 3.1 23 463-485 20-42 (213)
454 1zj6_A ADP-ribosylation factor 93.9 0.026 9.1E-07 53.2 2.9 23 463-485 16-38 (187)
455 2p5s_A RAS and EF-hand domain 93.9 0.029 9.8E-07 53.7 3.1 25 462-486 27-51 (199)
456 2wsm_A Hydrogenase expression/ 93.9 0.025 8.7E-07 55.0 2.8 24 464-487 31-54 (221)
457 2iwr_A Centaurin gamma 1; ANK 93.8 0.023 7.8E-07 53.0 2.3 21 465-485 9-29 (178)
458 3a1s_A Iron(II) transport prot 93.8 0.03 1E-06 56.7 3.3 23 465-487 7-29 (258)
459 2f7s_A C25KG, RAS-related prot 93.8 0.032 1.1E-06 54.1 3.3 22 465-486 27-48 (217)
460 2h57_A ADP-ribosylation factor 93.8 0.022 7.6E-07 53.9 2.2 24 464-487 22-45 (190)
461 2h17_A ADP-ribosylation factor 93.8 0.024 8.3E-07 53.3 2.4 21 465-485 23-43 (181)
462 2q3h_A RAS homolog gene family 93.8 0.033 1.1E-06 53.2 3.3 24 463-486 20-43 (201)
463 3c5c_A RAS-like protein 12; GD 93.7 0.032 1.1E-06 53.0 3.1 29 465-493 23-56 (187)
464 2j1l_A RHO-related GTP-binding 93.7 0.029 1E-06 54.5 2.9 21 465-485 36-56 (214)
465 4gzl_A RAS-related C3 botulinu 93.7 0.046 1.6E-06 52.7 4.3 23 463-485 30-52 (204)
466 3foz_A TRNA delta(2)-isopenten 93.7 0.034 1.2E-06 57.9 3.4 26 463-488 10-35 (316)
467 3cnl_A YLQF, putative uncharac 93.7 0.033 1.1E-06 56.6 3.3 30 464-493 100-129 (262)
468 3def_A T7I23.11 protein; chlor 93.7 0.03 1E-06 56.6 2.9 22 465-486 38-59 (262)
469 2fu5_C RAS-related protein RAB 93.6 0.022 7.5E-07 53.4 1.8 21 465-485 10-30 (183)
470 1h65_A Chloroplast outer envel 93.6 0.03 1E-06 56.9 2.9 23 465-487 41-63 (270)
471 3q3j_B RHO-related GTP-binding 93.6 0.043 1.5E-06 53.4 4.0 30 464-493 28-62 (214)
472 2p65_A Hypothetical protein PF 93.6 0.028 9.7E-07 52.5 2.6 29 461-489 41-69 (187)
473 1jwy_B Dynamin A GTPase domain 93.6 0.03 1E-06 57.8 2.9 23 465-487 26-48 (315)
474 2fh5_B SR-beta, signal recogni 93.6 0.044 1.5E-06 52.9 3.9 23 464-486 8-30 (214)
475 2gco_A H9, RHO-related GTP-bin 93.6 0.03 1E-06 53.7 2.7 21 465-485 27-47 (201)
476 3cmu_A Protein RECA, recombina 93.5 0.1 3.5E-06 66.7 7.8 35 450-484 1066-1102(2050)
477 2r62_A Cell division protease 93.5 0.015 5.1E-07 58.7 0.3 32 453-486 36-67 (268)
478 2aka_B Dynamin-1; fusion prote 93.4 0.031 1.1E-06 57.1 2.7 23 465-487 28-50 (299)
479 2b6h_A ADP-ribosylation factor 93.4 0.033 1.1E-06 53.2 2.6 33 451-485 19-51 (192)
480 3r7w_A Gtpase1, GTP-binding pr 93.4 0.039 1.3E-06 57.3 3.4 26 462-487 2-27 (307)
481 3l0o_A Transcription terminati 93.4 0.016 5.3E-07 62.1 0.3 54 432-487 135-199 (427)
482 3euj_A Chromosome partition pr 93.4 0.11 3.9E-06 57.3 7.2 70 571-648 378-464 (483)
483 2atx_A Small GTP binding prote 93.3 0.036 1.2E-06 52.6 2.7 22 465-486 20-41 (194)
484 4b4t_J 26S protease regulatory 93.3 0.11 3.9E-06 55.9 6.9 29 459-487 178-206 (405)
485 2hf9_A Probable hydrogenase ni 93.2 0.037 1.3E-06 54.0 2.7 24 464-487 39-62 (226)
486 4djt_A GTP-binding nuclear pro 93.2 0.021 7.1E-07 55.4 0.8 21 465-485 13-33 (218)
487 3eph_A TRNA isopentenyltransfe 93.2 0.039 1.3E-06 59.5 3.0 26 463-488 2-27 (409)
488 1g8f_A Sulfate adenylyltransfe 93.0 0.041 1.4E-06 61.3 3.1 29 461-489 393-421 (511)
489 3geh_A MNME, tRNA modification 93.0 0.036 1.2E-06 61.2 2.5 49 462-510 223-283 (462)
490 2x77_A ADP-ribosylation factor 93.0 0.03 1E-06 52.8 1.6 24 462-485 21-44 (189)
491 2v3c_C SRP54, signal recogniti 93.0 0.015 5E-07 63.7 -0.8 38 464-501 100-137 (432)
492 2yc2_C IFT27, small RAB-relate 92.9 0.025 8.4E-07 54.1 0.9 22 465-486 22-43 (208)
493 2hup_A RAS-related protein RAB 92.9 0.044 1.5E-06 52.6 2.7 21 465-485 31-51 (201)
494 3cpj_B GTP-binding protein YPT 92.9 0.051 1.7E-06 53.1 3.1 22 465-486 15-36 (223)
495 2zts_A Putative uncharacterize 92.8 0.068 2.3E-06 52.7 4.0 58 589-648 134-206 (251)
496 3sr0_A Adenylate kinase; phosp 92.6 0.041 1.4E-06 53.9 2.0 68 465-550 2-70 (206)
497 3ec1_A YQEH GTPase; atnos1, at 92.6 0.053 1.8E-06 58.0 3.0 26 462-487 161-186 (369)
498 1m8p_A Sulfate adenylyltransfe 92.5 0.054 1.8E-06 61.4 3.0 37 461-498 394-433 (573)
499 1lnz_A SPO0B-associated GTP-bi 92.5 0.072 2.5E-06 56.3 3.9 33 454-486 149-181 (342)
500 1mky_A Probable GTP-binding pr 92.5 0.091 3.1E-06 57.4 4.7 36 465-500 3-50 (439)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.2e-102 Score=962.65 Aligned_cols=470 Identities=35% Similarity=0.494 Sum_probs=441.0
Q ss_pred cchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 202 LDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 281 (680)
Q Consensus 202 l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~ 281 (680)
+|++|||++++|++++|+++|++.+++.++..+..++..+++++++++++++++|++++++++++|+++++..++.++.+
T Consensus 182 ~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~ 261 (1321)
T 4f4c_A 182 QEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMS 261 (1321)
T ss_dssp SCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 282 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 361 (680)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 361 (680)
+..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+........+..+..++++++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 341 (1321)
T 4f4c_A 262 TFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIG 341 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888877777766666666666777888999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc-ccccccccccEEEEEE
Q 005740 362 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNI 440 (680)
Q Consensus 362 ~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nV 440 (680)
++++..|.+++|.+++++.|...+..|+..++..+..++++.++++|++++++.+|+.+.... +......+|+|+|+||
T Consensus 342 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nv 421 (1321)
T 4f4c_A 342 VGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENV 421 (1321)
T ss_dssp HHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEE
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEe
Confidence 999999999999999999999999999999999999999999999999999998876543222 2223345789999999
Q ss_pred EEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCC
Q 005740 441 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 520 (680)
Q Consensus 441 sF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~ 520 (680)
+|+||+++++++|+|+||+|+|||++|||||||||||||++||+|+|+|++|+|++||+|+++++.++||++||||+|||
T Consensus 422 sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 99999877789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeC
Q 005740 521 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 598 (680)
Q Consensus 521 ~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDE 598 (680)
+||+|||||||+||+ +++++||+++||+.|++||||++||+||||.|||+ +||||||||||||||+++||+||||||
T Consensus 502 ~Lf~~TI~eNI~~g~-~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE 580 (1321)
T 4f4c_A 502 ALFNCTIEENISLGK-EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE 580 (1321)
T ss_dssp CCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred eeeCCchhHHHhhhc-ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec
Confidence 999999999999994 68999999999999999999999999999999994 999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhh
Q 005740 599 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 599 aTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 676 (680)
||||||++||+.|+++|+++. +|||+|+||||++++++||+|+|||+|+|+|+|||+||++++|.|+++++.|.
T Consensus 581 ~tSaLD~~te~~i~~~l~~~~----~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 581 ATSALDAESEGIVQQALDKAA----KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTSCTTTHHHHHHHHHHHH----TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHh----CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 999999999999999999985 57999999999999999999999999999999999999999999999999874
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-101 Score=955.22 Aligned_cols=555 Identities=29% Similarity=0.402 Sum_probs=445.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE--E-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (680)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~--~-~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~ 196 (680)
+.+++.+.+++++.+++++++.++........+.++...+...... + ..........+++++++.+++.+++.+++.
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 819 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG 819 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888887777666665555444555555544322111 0 000111122333444455555555555443
Q ss_pred HHHH---------------hcchhcccc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005740 197 IANI---------------VLDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 259 (680)
Q Consensus 197 ~~~~---------------~l~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~ 259 (680)
.... ..|++|||. +++|++++|+++|++.++..+...+..++..+++++++++++++++|+++
T Consensus 820 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHH
Confidence 2211 139999986 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 260 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 339 (680)
Q Consensus 260 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (680)
+++++++|++++...++.++.++...+.++..++....+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 900 lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1321)
T 4f4c_A 900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ 979 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777766655554455556667788889999999999999999999999999999999888888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 005740 340 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLT--KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 417 (680)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~--af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 417 (680)
+........+..+..++++++|++++..|..+.+.+. +++.+......++..+...+..+.++..+.+|++++++.++
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A 980 GLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 6655555555555666778899999988877665443 33333333345556666778889999999999999999887
Q ss_pred CCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 418 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 418 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
+.+........++..|+|+|+||+|+||++++.+||+||||+|+|||+||||||||||||||++||+|||+|++|+|+||
T Consensus 1060 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iD 1139 (1321)
T 4f4c_A 1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFID 1139 (1321)
T ss_dssp SSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEET
T ss_pred cCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEEC
Confidence 75433333333456789999999999998777789999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC-CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCC
Q 005740 498 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 574 (680)
Q Consensus 498 G~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LS 574 (680)
|+|++++++++||++|++|||||+||+|||||||+||. +++++|||+++||++|++||||++||+||||.|||+ +||
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 99999999999999999999999999999999999994 357999999999999999999999999999999994 999
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive 654 (680)
|||||||||||||+|||+||||||||||||++||+.|+++|++. .+|||+|+|||||+|+++||||+|||+|+|+|
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~----~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA----REGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT----SSSSEEEEECSSSSTTTTCSEEEEESSSSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH----cCCCEEEEeccCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999887 46799999999999999999999999999999
Q ss_pred ecChHHHhhcCcHHHHHHHHhhhc
Q 005740 655 VGNHAELLHKGRLYAKLVKRQTES 678 (680)
Q Consensus 655 ~Gth~eLl~~~g~Y~~L~~~q~~~ 678 (680)
+|||+||++++|.|++||+.|..+
T Consensus 1296 ~Gth~eLl~~~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1296 KGTHTQLMSEKGAYYKLTQKQMTE 1319 (1321)
T ss_dssp EECHHHHHHCC-------------
T ss_pred ECCHHHHHhCCcHHHHHHHHHHhc
Confidence 999999999999999999998753
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-96 Score=847.00 Aligned_cols=550 Identities=24% Similarity=0.377 Sum_probs=478.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005740 122 RMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN- 199 (680)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~~~- 199 (680)
+++++++++++.+++++++.++.+++.++.|++++.+++.... .+...+.....+++++.++..++.+++.++.....
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQ 92 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999988875421 11112222222222333333444444333322110
Q ss_pred --------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005740 200 --------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLI 265 (680)
Q Consensus 200 --------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~lv~l~~ 265 (680)
..+|+.||+++++|++++|+++|++.+++++...+..++..+++++++++++++++|+++++++++
T Consensus 93 ~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 172 (587)
T 3qf4_A 93 NFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124999999999999999999999999999998888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 266 CSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS 345 (680)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (680)
+|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
T 3qf4_A 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888889999999999999999999999999999999999999999998888777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc
Q 005740 346 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 425 (680)
Q Consensus 346 ~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 425 (680)
...+.....++++++|++++..|.+++|.+++|+.|...+..|+..++..+..+.++..+++|+.++++.+++.++....
T Consensus 253 ~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 332 (587)
T 3qf4_A 253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNA 332 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 55666666677889999999999999999999999999999999999999999999999999999999987654332222
Q ss_pred cccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC
Q 005740 426 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 505 (680)
Q Consensus 426 ~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~ 505 (680)
...+...+.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 333 LALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411 (587)
T ss_dssp BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC
T ss_pred cccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC
Confidence 2223446789999999999753 457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAI 583 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaI 583 (680)
.+++|++|+||||||+||++||+|||.+|. ++.++++++++++.++++|+++++|+||||.+||+ +||||||||+||
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred HHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 999999999999999999999999999994 58899999999999999999999999999999994 999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+++||+|||||||||+||+++|+.|++.++++. +|+|+|+||||+++++.||||+||++|+|+|+|+|+||++
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT----KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS----TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999873 5799999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhh
Q 005740 664 KGRLYAKLVKRQTE 677 (680)
Q Consensus 664 ~~g~Y~~L~~~q~~ 677 (680)
++|.|+++++.|.+
T Consensus 567 ~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 567 HCKPYREIYESQFG 580 (587)
T ss_dssp HCHHHHHHHHHHC-
T ss_pred CCcHHHHHHHHHhc
Confidence 99999999998864
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4e-96 Score=841.80 Aligned_cols=551 Identities=29% Similarity=0.424 Sum_probs=480.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-h---HHHH----HHHHHHHHHHHHHHHHHHHHH
Q 005740 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-E---AMVF----HKSSRFLVLLCVTSGIFSGLR 191 (680)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~---~~~~----~~~~~~l~~l~~~~~i~~~~~ 191 (680)
+++++++++++++.+++++++.++..++.++.|++++..++..... + ...+ ......++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999998887653211 1 1111 111111122223334444444
Q ss_pred HHHHHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005740 192 SGCFSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 256 (680)
Q Consensus 192 ~~~~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~ 256 (680)
.++..... ..+|++||+++++|++++|+++|++.+++++...+..++.+++++++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 43322111 124999999999999999999999999999988888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005740 257 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 336 (680)
Q Consensus 257 ~L~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (680)
++++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888898888999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005740 337 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 416 (680)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~ 416 (680)
+..+........+..+..++++++|++++..|.+++|.+++++.|...+..|+..+...+..+.++..+++|++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77776666666666666778889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE
Q 005740 417 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 496 (680)
Q Consensus 417 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 496 (680)
++..+.....+.+...++|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 7643222222223346789999999999853 457999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCC
Q 005740 497 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 574 (680)
Q Consensus 497 dG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LS 574 (680)
||+|+++++.+++|++||||||||.+|++||+|||.+|. ++.++++++++++.++++|+++++|+||||.+|| .+||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 999999999999999999999999999999999999994 6889999999999999999999999999999999 4999
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive 654 (680)
||||||++||||+++||+|||||||||+||+++|+.|++.++++. +++|+|+||||+++++.||+|+||++|+|+|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999884 4689999999999999999999999999999
Q ss_pred ecChHHHhhcCcHHHHHHHHhh
Q 005740 655 VGNHAELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 655 ~Gth~eLl~~~g~Y~~L~~~q~ 676 (680)
+|+|+||++++|.|+++|+.|.
T Consensus 556 ~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 556 TGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp EECHHHHHHTTSHHHHHHTTTT
T ss_pred ECCHHHHHhCCcHHHHHHHhhc
Confidence 9999999999999999998774
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-96 Score=844.14 Aligned_cols=555 Identities=26% Similarity=0.439 Sum_probs=486.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (680)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~ 194 (680)
.+..+++++++++++++.+++++++.++.+++.++.|++++..++.... .+...+......++++.++..++.+++.++
T Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999988865421 111112222222333344444555554443
Q ss_pred HHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005740 195 FSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 259 (680)
Q Consensus 195 ~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~ 259 (680)
..... ..+|++||+++++|++++|+++|++.+++.+...+..++.+++.++++++++++++|+++
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 180 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS 180 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32111 124999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 260 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 339 (680)
Q Consensus 260 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (680)
+++++++|+++++...+.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (598)
T 3qf4_B 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS 260 (598)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888899999999999999999999999999999999999999999988888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 005740 340 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN 419 (680)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 419 (680)
+........+..+..++++++|++++..|.+++|.+++++.|...+..|+..+...+..+.++..+++|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 65555566666666677888999999999999999999999999999999999999999999999999999999987764
Q ss_pred cccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe
Q 005740 420 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 499 (680)
Q Consensus 420 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 499 (680)
+. +...+.+...++|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 341 ~~-~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 341 DD-PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CC-SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CC-CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 32 122222344678999999999974 357999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHH
Q 005740 500 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 577 (680)
Q Consensus 500 di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQ 577 (680)
|+++++.+++|++||||||||.+|++||+|||.+|. ++.++++++++++.++++++++++|+||||.+|| .+|||||
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 999999999999999999999999999999999994 5789999999999999999999999999999998 4999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
|||+|||||+++||+|||||||||+||+++|+.|++.++++. +|+|+|+||||+++++.||+|+||++|+|+|+|+
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH----TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999984 4799999999999999999999999999999999
Q ss_pred hHHHhhcCcHHHHHHHHhhhc
Q 005740 658 HAELLHKGRLYAKLVKRQTES 678 (680)
Q Consensus 658 h~eLl~~~g~Y~~L~~~q~~~ 678 (680)
|+||++++|.|+++++.|.+.
T Consensus 573 ~~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 573 HDELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp HHHHHHTTCHHHHHHHHHHGG
T ss_pred HHHHHhCCCHHHHHHHHHhhh
Confidence 999999999999999988653
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.6e-94 Score=823.83 Aligned_cols=553 Identities=30% Similarity=0.466 Sum_probs=480.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (680)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 195 (680)
++.+++++++.+++++.+++++++.++.+++.++.|++++..++..... +..........++++.++..++.+++.++.
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999888888888999999999999888877643211 111111111112222333444444443332
Q ss_pred HHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005740 196 SIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 260 (680)
Q Consensus 196 ~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~l 260 (680)
.... ..+|++||+++++|++++|+++|++.++.++...+..++.++++++++++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2110 1239999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 261 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 340 (680)
Q Consensus 261 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (680)
++++++|+++++...+.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+...
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888899999999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 005740 341 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 420 (680)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 420 (680)
........+..+..++++++|++++..|.+|+|++++++.|...+..|+..++..+..++++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 66666666666666778889999999999999999999999999999999999999999999999999999998776532
Q ss_pred ccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 421 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 421 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
. ...+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 330 N--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 1 111122235689999999999753 2579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHH
Q 005740 501 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 578 (680)
Q Consensus 501 i~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQr 578 (680)
+++++.+++|++||||||||.+|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 99999999999999999999999999999999994247889999999999999999999999999999994 9999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecCh
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth 658 (680)
||++||||+++||+|||||||||+||+++|+.|++.|+++. +|+|+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ----KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999873 47999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHHhh
Q 005740 659 AELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 659 ~eLl~~~g~Y~~L~~~q~ 676 (680)
+||+++++.|+++++.|.
T Consensus 563 ~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred HHHHhCCcHHHHHHHHhh
Confidence 999999999999999885
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-93 Score=824.10 Aligned_cols=555 Identities=33% Similarity=0.507 Sum_probs=463.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE---A-MVFHKSSRFLVLLCVTSGIFSGLRSG 193 (680)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~---~-~~~~~~~~~l~~l~~~~~i~~~~~~~ 193 (680)
+.+++++++.+++++.+++++++.++.+++.++.|++++..++...... . ..+......++++.++..++.+++.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (595)
T 2yl4_A 5 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVY 84 (595)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999988888888888888899998888776432110 0 01111111222223333444444433
Q ss_pred HHHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005740 194 CFSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 258 (680)
Q Consensus 194 ~~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L 258 (680)
+..... ..+|++||+++++|++++|+++|++.++..+...+..++.+++.+++.++++++++|++
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 322110 12499999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 259 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 338 (680)
Q Consensus 259 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 338 (680)
++++++++|+++++...+.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888999999999999999999999999999999999999999999988887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005740 339 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 418 (680)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 418 (680)
.+........+..+..++++++|++++..|.+|+|.+++|+.|...+..|+..++..+..++++..+++|++++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 66666555555556666778899999999999999999999999999999999999999999999999999999998765
Q ss_pred Cccccccccccccccc-EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 419 NQFLSEGVKLQRLMGH-VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 419 ~~~~~~~~~~~~~~g~-I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
.+........+...++ |+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 325 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 404 (595)
T 2yl4_A 325 LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404 (595)
T ss_dssp SCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEET
T ss_pred cCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 3321111111223567 999999999975433579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCC---CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CC
Q 005740 498 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DL 572 (680)
Q Consensus 498 G~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~---~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~ 572 (680)
|+|+++++.+++|++||||+|||.+|++||+|||.+|. ++ .++++++++++.++++++++++|+||||.+|| .+
T Consensus 405 g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 405 GHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA-DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTS-SSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcC-CCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 99999999999999999999999999999999999995 34 78999999999999999999999999999998 39
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 573 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
||||||||++||||+++||+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||+|+||++|+|
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i 559 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DGRTVLVIAHRLSTIKNANMVAVLDQGKI 559 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH----TTSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999985 36899999999999999999999999999
Q ss_pred EEecChHHHhhc-CcHHHHHHHHhhh
Q 005740 653 IEVGNHAELLHK-GRLYAKLVKRQTE 677 (680)
Q Consensus 653 ve~Gth~eLl~~-~g~Y~~L~~~q~~ 677 (680)
+|+|+|+||+++ ++.|+++++.|..
T Consensus 560 ~~~g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 560 TEYGKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp EEEECSCC------C-----------
T ss_pred EEECCHHHHHhCCChHHHHHHHHhhc
Confidence 999999999984 8999999988764
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-93 Score=822.74 Aligned_cols=553 Identities=31% Similarity=0.475 Sum_probs=480.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (680)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 195 (680)
++.+++++++.+++++.+++++++.++.+++.++.|++++..++.... .+..........++++.++..++.+++.++.
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999988888888899999999999988888765321 1111111111112223333444444443332
Q ss_pred HHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005740 196 SIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 260 (680)
Q Consensus 196 ~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L~l 260 (680)
.... ..+|++||+++++|++++|+++|++.++..+...+..++..++++++.++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 169 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2110 1239999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 261 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 340 (680)
Q Consensus 261 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (680)
++++++|+++++...+.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+...
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888899999999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 005740 341 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 420 (680)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 420 (680)
........+..+..++++++|++++..|.+|+|.+++++.|...+..|+..++..+..+.++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666666666778889999999999999999999999999999999999999999999999999999999876532
Q ss_pred ccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 421 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 421 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
. .+.+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 330 E--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp C--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred C--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 2 111222335679999999999742 2579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHH
Q 005740 501 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 578 (680)
Q Consensus 501 i~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQr 578 (680)
+++++.+++|++||||||||.+|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred ccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 99999999999999999999999999999999994247889999999999999999999999999999984 9999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecCh
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth 658 (680)
||++||||+++||+|||||||||+||+++|+.|++.++++. +|+|+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999985 37999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHHhh
Q 005740 659 AELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 659 ~eLl~~~g~Y~~L~~~q~ 676 (680)
+||+++++.|+++++.|.
T Consensus 563 ~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHHTSSHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 999999999999999885
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-92 Score=873.39 Aligned_cols=552 Identities=36% Similarity=0.512 Sum_probs=475.5
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHHHHH
Q 005740 120 LSRMWNLIGR-DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE---------------------AMVFHKSSRFL 177 (680)
Q Consensus 120 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~~---------------------~~~~~~~~~~l 177 (680)
++++++|..+ +++.++++++++++..++..+.|++++..++...... ..........+
T Consensus 35 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1284)
T 3g5u_A 35 VLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYY 114 (1284)
T ss_dssp THHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHH
Confidence 4567777754 5666677777777777777777777776654321100 00111112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhcchhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 178 VLLCVTSGIFSGLRSGCFSIAN---------------IVLDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSL 242 (680)
Q Consensus 178 ~~l~~~~~i~~~~~~~~~~~~~---------------~~l~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~ 242 (680)
+++.++..++.+++.+++.... ..+|++|||++++|++++|+++|++.+++.+...+..++..++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~ 194 (1284)
T 3g5u_A 115 TGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544433211 1139999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHH
Q 005740 243 QGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK 322 (680)
Q Consensus 243 ~~i~~~~~l~~~s~~L~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~ 322 (680)
+++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|+.|+.+.++|.
T Consensus 195 ~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~ 274 (1284)
T 3g5u_A 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274 (1284)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 323 IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS 402 (680)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~ 402 (680)
+..++..+...+.....+.......++.....++++|+|++++..|.+++|.+++++.+......|+..+...+..++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1284)
T 3g5u_A 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANA 354 (1284)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877766666666666666677788999999999999999999988888878888988888899999999
Q ss_pred HHHHHHHHHHhhcCCCCccc-ccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHH
Q 005740 403 IGATEKVFQLIDLLPSNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 481 (680)
Q Consensus 403 ~~a~~ri~~~l~~~~~~~~~-~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~ 481 (680)
..+++|++++++.+|+.+.. ..+..++..+|+|+|+||+|+|+++++.+||+||||+|+|||++|||||||||||||++
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999987764321 12222334568999999999998755568999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCC
Q 005740 482 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 561 (680)
Q Consensus 482 LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP 561 (680)
+|+|+|+|++|+|++||+|+++++.+++|++||||+|||+||++||+|||.+|. ++++++++++|++.+++++||.++|
T Consensus 435 ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~ 513 (1284)
T 3g5u_A 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-EDVTMDEIEKAVKEANAYDFIMKLP 513 (1284)
T ss_dssp HTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC-SSCCHHHHHHHHHHTTCHHHHHHST
T ss_pred HHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999994 5899999999999999999999999
Q ss_pred CCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh
Q 005740 562 CGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 639 (680)
Q Consensus 562 ~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~ 639 (680)
+||||.+||+ +||||||||||||||+++||+|||||||||+||++||+.|++.+++.. +|+|+|+||||+++++
T Consensus 514 ~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR----EGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp TGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH----TTSEEEEECSCHHHHT
T ss_pred ccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHH
Confidence 9999999994 999999999999999999999999999999999999999999998874 4799999999999999
Q ss_pred hcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhh
Q 005740 640 AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 640 ~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 676 (680)
+||+|+||++|+|+|+|+|+||++++|.|++++..|.
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred cCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999998764
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-86 Score=821.90 Aligned_cols=553 Identities=32% Similarity=0.445 Sum_probs=465.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-----EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (680)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~i~~~~~~-----~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 195 (680)
.+++++.+++++.+++++++.++..++....|+++...+...... ..........+++++.++..++.+++.+++
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 773 (1284)
T 3g5u_A 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTF 773 (1284)
T ss_dssp THHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888777777777777777777777766655322110 001111112222233333344444444433
Q ss_pred HHHH---------------Hhcchhcccc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005740 196 SIAN---------------IVLDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 258 (680)
Q Consensus 196 ~~~~---------------~~l~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~l~~~s~~L 258 (680)
.... ...|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|++
T Consensus 774 ~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l 853 (1284)
T 3g5u_A 774 GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2211 1249999994 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005740 259 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 338 (680)
Q Consensus 259 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 338 (680)
++++++++|+++++.....++.++...+.++..+..+..+.|+++|+++||+|+.|+.+.++|.+..+...+...+....
T Consensus 854 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1284)
T 3g5u_A 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777777777777788888899999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005740 339 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 418 (680)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 418 (680)
.+........+..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+++|++++++.+|+
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1013 (1284)
T 3g5u_A 934 FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 66666666666666777888999999999999999999888888777777777666667788899999999999998776
Q ss_pred Ccccc-cccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 419 NQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 419 ~~~~~-~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
..... .+..++...|.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 1014 ~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~ 1093 (1284)
T 3g5u_A 1014 IDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093 (1284)
T ss_dssp SSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESS
T ss_pred ccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 43221 11222334688999999999986545579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCC-CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCC
Q 005740 498 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 574 (680)
Q Consensus 498 G~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LS 574 (680)
|+|+++++.+++|++|+||||||.||++||+|||.+|.+ ...++++++++++.+++++++.++|+||||.|||+ +||
T Consensus 1094 g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS 1173 (1284)
T 3g5u_A 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173 (1284)
T ss_dssp SSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC
T ss_pred CEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccC
Confidence 999999999999999999999999999999999999953 24789999999999999999999999999999994 999
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEE
Q 005740 575 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 654 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive 654 (680)
||||||+||||||+++|+|||||||||+||+++|+.|+++|++. .+|+|+|+||||++++++||||+||++|+|+|
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~----~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA----REGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH----SSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----CCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999886 35799999999999999999999999999999
Q ss_pred ecChHHHhhcCcHHHHHHHHhhh
Q 005740 655 VGNHAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 655 ~Gth~eLl~~~g~Y~~L~~~q~~ 677 (680)
+|+|+||++++|.|++||+.|..
T Consensus 1250 ~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1250 HGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp EECHHHHHHSCSHHHHHHHHHC-
T ss_pred ECCHHHHHhCCCHHHHHHHHHhh
Confidence 99999999999999999998864
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-72 Score=594.94 Aligned_cols=275 Identities=40% Similarity=0.599 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCc
Q 005740 396 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 475 (680)
Q Consensus 396 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsG 475 (680)
+.+++++.++++|++++++.+++........+.+...+.|+|+||+|+|++ +.+||+||||+|++||++|||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 456777888999999999876653322222222234578999999999974 347999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHH
Q 005740 476 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 555 (680)
Q Consensus 476 KSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~d 555 (680)
||||+++|+|+|+|++|+|++||+|+++++.+++|++||||+|++.||++||+|||.||. +.+++++++++++.+++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~-~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR-VTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS-TTCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhc-ccCCHHHHHHHHHHhCcHH
Confidence 999999999999999999999999999999999999999999999999999999999994 5789999999999999999
Q ss_pred HHHcCCCCcccccCCC--CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 005740 556 FILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633 (680)
Q Consensus 556 fI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH 633 (680)
++.++|+||+|.+|+. +|||||||||||||||+++|+|||||||||+||+++|+.|++.|+++. +++|+|+|||
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH 247 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC----ANRTTIVVAH 247 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH----TTSEEEEECC
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEEc
Confidence 9999999999999994 999999999999999999999999999999999999999999999985 3689999999
Q ss_pred CcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhhh
Q 005740 634 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 677 (680)
Q Consensus 634 Rlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 677 (680)
|+++++.||+|+||++|+|+|.|+|+||++++|.|+++|+.|..
T Consensus 248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998864
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-59 Score=483.78 Aligned_cols=237 Identities=48% Similarity=0.732 Sum_probs=223.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
.+|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999531 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
||||+|++.+|.+|++|||.++. +..+++++.++++.+++.+++.++|+||++.+++ .+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 4567888999999999999999999999999998 49999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc-CcHHH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYA 669 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~-~g~Y~ 669 (680)
|++||||||||+||+++++.|.+.|+++. +|+|+|+|||+++.++.||+|++|++|+|++.|+++|+++. ++.|+
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 239 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHH
Confidence 99999999999999999999999999884 37899999999999999999999999999999999999988 89999
Q ss_pred HHHHHh
Q 005740 670 KLVKRQ 675 (680)
Q Consensus 670 ~L~~~q 675 (680)
+++..|
T Consensus 240 ~l~~~~ 245 (247)
T 2ff7_A 240 YLYQLQ 245 (247)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999876
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-58 Score=479.18 Aligned_cols=240 Identities=39% Similarity=0.651 Sum_probs=223.4
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.+.|+++||+|+|+++.++++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|++||.|+.+++...+|+
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHT
T ss_pred CCeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhc
Confidence 3569999999999753224699999999999999999999999999999999999987 899999999999988889999
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~ 589 (680)
+|+||+|++.+|++|++|||.++. ...+++++.++++.+++.+++..+|+|+||.+++ .+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCcccccCHHHHHhccC-CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999984 3567888999999999999999999999999997 4999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHH
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 669 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~ 669 (680)
+|+|||||||||+||+++++.+.+.|+++. +++|+|+|||+++.++.||+|++|++|+|++.|+++++++.++.|+
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 248 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 999999999999999999999999999883 3689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 005740 670 KLVKRQTE 677 (680)
Q Consensus 670 ~L~~~q~~ 677 (680)
+++..|..
T Consensus 249 ~~~~~~~~ 256 (260)
T 2ghi_A 249 EMWNMQSG 256 (260)
T ss_dssp HHHHHHHC
T ss_pred HHHHhhhh
Confidence 99987753
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.9e-58 Score=479.21 Aligned_cols=242 Identities=38% Similarity=0.668 Sum_probs=221.6
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.+.|+++||+|+|+++.+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999997422257999999999999999999999999999999999999999999999999999888888999
Q ss_pred cEEEEccCCcCccccHHHHHhcCCCCCCCH-HHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 005740 512 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 512 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~-eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll 588 (680)
+|+||+|++.+|..|++|||.++. +..++ +++.++++.+++++++..+|+|+++.+++ .+||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999984 34444 77888899999999999999999999887 499999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 668 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y 668 (680)
++|+|||||||||+||+++++.|.+.|+++.++ .|+|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 250 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEW--ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT--TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHH
Confidence 999999999999999999999999999987431 379999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 005740 669 AKLVKRQT 676 (680)
Q Consensus 669 ~~L~~~q~ 676 (680)
++++..|.
T Consensus 251 ~~~~~~~~ 258 (271)
T 2ixe_A 251 RSMVEALA 258 (271)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99988764
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-59 Score=476.80 Aligned_cols=236 Identities=42% Similarity=0.671 Sum_probs=221.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999953 247999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 592 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ 592 (680)
||+|++.+|.+|++|||.++..+..+++++.++++.+++++++.++|+|++|.+++ .+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998323567888999999999999999999999999998 3999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
+||||||||+||+++++.+.+.|+++. +|+|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|++++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999999884 3789999999999999999999999999999999999999889999998
Q ss_pred HHhh
Q 005740 673 KRQT 676 (680)
Q Consensus 673 ~~q~ 676 (680)
..+.
T Consensus 236 ~~~~ 239 (243)
T 1mv5_A 236 SEQL 239 (243)
T ss_dssp HCCC
T ss_pred Hhhh
Confidence 7654
No 16
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=442.88 Aligned_cols=226 Identities=27% Similarity=0.488 Sum_probs=204.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35799999999999999999999999999999999999999999999999 49
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCC
Q 005740 514 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p 591 (680)
+||+|++.+|+.|++|||.++. ..++++..++++.+++.+.+..+|.|++|.+++ .+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTS--CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcc--ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999984 234556778888888888999999999999987 399999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHH
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 671 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L 671 (680)
+|||||||||+||+++++.+.+.|.+..+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++.++.|+++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 225 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKG-MLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTS-TTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHh-hcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHH
Confidence 99999999999999999999988842111 02478999999999999899999999999999999999999999999999
Q ss_pred HHHhh
Q 005740 672 VKRQT 676 (680)
Q Consensus 672 ~~~q~ 676 (680)
+..|.
T Consensus 226 ~~~~~ 230 (237)
T 2cbz_A 226 LRTYA 230 (237)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98875
No 17
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-55 Score=473.23 Aligned_cols=230 Identities=25% Similarity=0.427 Sum_probs=213.8
Q ss_pred ccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh
Q 005740 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 431 ~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR 510 (680)
..+.|+++||+|+|++. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||+|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34689999999999642 3579999999999999999999999999999999999998 999999999999999999999
Q ss_pred ccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHHc
Q 005740 511 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 588 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRIaIARAll 588 (680)
++||||+|++.||..|++|||.+. . ...+++++++++.+++++++.+.|.+|+|.+++. +||||||||+||||||+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~-~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPN-A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTT-C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhc-c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999865 2 4578899999999999999999999999999984 89999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc-CcH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRL 667 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~-~g~ 667 (680)
++|++||||||||+||+.+++.+++.|+++ .+++|+|+|||+++.+..||||+||++|+|++.|+++|++++ ...
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~----~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~ 247 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQA----FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTT----TTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHH----hCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCch
Confidence 999999999999999999999999999876 347899999999999999999999999999999999999986 344
Q ss_pred H
Q 005740 668 Y 668 (680)
Q Consensus 668 Y 668 (680)
|
T Consensus 248 ~ 248 (390)
T 3gd7_A 248 F 248 (390)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.4e-54 Score=435.54 Aligned_cols=220 Identities=25% Similarity=0.428 Sum_probs=198.1
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999642 35799999999999999999999999999999999999999999999998 4
Q ss_pred EEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~ 590 (680)
|+||+|++.+|.+|++|||.++. ...+.++.++++.+++.+++..+|.+++|.+++ .+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999983 234556777888899999999999999999987 49999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHH-HHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHH
Q 005740 591 PAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 669 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l-~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~ 669 (680)
|++||||||||+||+++++.+.+.+ +++ .+++|+|+|||+++.++.||+|++|++|+|++.|++++++++++.|.
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~----~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHh----hCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 9999999999999999999998763 443 24789999999999998999999999999999999999998877787
Q ss_pred HHH
Q 005740 670 KLV 672 (680)
Q Consensus 670 ~L~ 672 (680)
+++
T Consensus 225 ~~~ 227 (229)
T 2pze_A 225 SKL 227 (229)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.2e-52 Score=448.46 Aligned_cols=221 Identities=31% Similarity=0.471 Sum_probs=191.6
Q ss_pred ccEEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh--
Q 005740 433 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-- 509 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-- 509 (680)
.-|+++||+++|+++. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+..++.+++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4599999999997421 2359999999999999999999999999999999999999999999999999999987654
Q ss_pred -hccEEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 510 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 510 -R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
|++||||+|++.||. .||+|||.++.. ...+. +++.++++.+++.++..+.| .+||||||||++
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 789999999999986 499999998621 12233 34666777777655443333 369999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHH
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eL 661 (680)
|||||+.+|+|||||||||+||+.+.+.|.+.|+++.++ .|+|+|+|||+++.++. ||||+||++|+|++.|+++|+
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~--~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998643 37999999999999876 999999999999999999999
Q ss_pred hhc
Q 005740 662 LHK 664 (680)
Q Consensus 662 l~~ 664 (680)
+.+
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 975
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.6e-52 Score=436.13 Aligned_cols=224 Identities=28% Similarity=0.476 Sum_probs=188.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~~~~~~LR~ 511 (680)
-|+++||+|+|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999742 35999999999999999999999999999999999999999999999999994 344567899
Q ss_pred cEEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 512 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 512 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~s~e----ei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
+||||+|+| .+|..|++|||.++.. ...+.+ ++.++++..++.++..+.| .+||||||||++||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc---------ccCCHHHHHHHHHH
Confidence 999999997 5889999999998731 123333 3555666655543322211 37999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+.+|++||||||||+||+.+.+.+.+.|+++.++ +|+|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998521 27899999999999865 99999999999999999999987
Q ss_pred cCcHHHH
Q 005740 664 KGRLYAK 670 (680)
Q Consensus 664 ~~g~Y~~ 670 (680)
....+..
T Consensus 234 ~~~~~~~ 240 (275)
T 3gfo_A 234 EKEVIRK 240 (275)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 6554443
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-52 Score=427.95 Aligned_cols=218 Identities=33% Similarity=0.474 Sum_probs=180.6
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh----
Q 005740 435 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 509 (680)
Q Consensus 435 I~f~nVsF~Y~~~~-~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L---- 509 (680)
|+++||+|+|+++. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2359999999999999999999999999999999999999999999999999999998765
Q ss_pred hccEEEEccCCcCccc-cHHHHHhcCCC----CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 510 REKIGFVGQEPQLLQM-DIKSNIMYGCP----KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~----~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
|++||||+|++.+|.. |++||+.++.. ...+. +++.++++..++.+.. .+..+ ..||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~~LSgGq~QR 153 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------ANHKP--NQLSGGQQQR 153 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG------TTCCG--GGSCHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh------hhCCh--hhCCHHHHHH
Confidence 4579999999999976 99999987410 12232 2344455555442211 01111 3699999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHH
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~e 660 (680)
++|||||+.+|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999998532 3789999999999888899999999999999998877
Q ss_pred Hh
Q 005740 661 LL 662 (680)
Q Consensus 661 Ll 662 (680)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 54
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-51 Score=418.88 Aligned_cols=219 Identities=21% Similarity=0.383 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~ 512 (680)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 469999999999999999999999999999999999999999999999999998887765 556
Q ss_pred EEEEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcc
Q 005740 513 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 513 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~ 589 (680)
|+||+|++.+|.+ |++||+.++..+..+.++..+.++ +.++.++ |++...+. .+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 999999997312222333332222 2233332 23333333 3799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+|++||||||||+||+++.+.+.+.|+++.+ +|+|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999853 378999999999876 56999999999999999999999864
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3e-51 Score=425.11 Aligned_cols=217 Identities=27% Similarity=0.422 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+++|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999964 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCC---CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g~~~---~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
+||+|++.+ |..|++||+.++... ...++++.++++..++.++..+ .+ .+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------DY--RVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------BG--GGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------Cc--ccCCHHHHHHHHHHHHHhc
Confidence 999999987 678999999997421 1234556777777765433221 11 3699999999999999999
Q ss_pred ------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHh
Q 005740 590 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 590 ------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
+|++||||||||+||+.+.+.+.+.|+++.++ .++|+|+|||+++.+. .||||++|++|+|++.|+++|++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999998643 3579999999999987 59999999999999999999998
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9e-51 Score=420.54 Aligned_cols=217 Identities=34% Similarity=0.496 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~~~~~~LR~ 511 (680)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 46999999999999999999999999999999999999999999999999985 445667889
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
+||||+|++.+|.. |++||+.++. ....+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP---------DSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999976 9999998852 11222 234556666666544322221 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+. .||+|++|++|+|++.|+++++++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999864 3789999999999987 599999999999999999999987
Q ss_pred cC
Q 005740 664 KG 665 (680)
Q Consensus 664 ~~ 665 (680)
+.
T Consensus 249 ~~ 250 (263)
T 2olj_A 249 RP 250 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 25
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-50 Score=424.95 Aligned_cols=237 Identities=25% Similarity=0.392 Sum_probs=188.7
Q ss_pred HHHHHhhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 408 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 408 ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
|+.++++.+.+... ........+.|+++||+|+| +++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN---NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc---cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66677766543211 11112234579999999964 25999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccc
Q 005740 488 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 567 (680)
Q Consensus 488 ~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~ 567 (680)
+|++|+|++|| +|+||+|++.+|.+|++|||. +. ...+..+.++++.+++.+++..+|++++|.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999998 499999999999999999999 63 234556677888899999999999999999
Q ss_pred cCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHhccCCCCeEEEEEecCcchHhhcCEE
Q 005740 568 VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 644 (680)
Q Consensus 568 vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l-~~l~~~~~~~~TvIvIaHRlsti~~aD~I 644 (680)
+++ .+||||||||++|||||+++|++||||||||+||+.+++.+.+.+ +++ .+++|+|+|||+++.++.||+|
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~----~~~~tviivtHd~~~~~~~d~i 228 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKI 228 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHSSEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHcCCEE
Confidence 997 499999999999999999999999999999999999999998764 333 2478999999999999999999
Q ss_pred EEEeCCEEEEecChHHHhhcCcHHHHHH
Q 005740 645 VVIDDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 645 ~vl~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
++|++|++++.|+++++++..+.|.+.+
T Consensus 229 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 229 LILHEGSSYFYGTFSELQNLRPDFSSKL 256 (290)
T ss_dssp EEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred EEEECCeEEEeCCHHHHhhhcHHHHHHH
Confidence 9999999999999999987666665543
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-50 Score=419.63 Aligned_cols=216 Identities=30% Similarity=0.480 Sum_probs=190.2
Q ss_pred EEEEEEEEEcCCCCC--CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 435 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~--~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
|+++||+|+|+.... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998652 77899
Q ss_pred EEEEccCC--cCccccHHHHHhcCCC----CCCCHHHHHHHHHHhcHH--HHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 513 IGFVGQEP--QLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 513 I~~V~Qd~--~LF~gTI~eNI~~g~~----~~~s~eei~~A~~~a~l~--dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
||||+|++ .+|..|++||+.++.. .+..++++.++++..++. ++..+.| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHHH
Confidence 99999996 5788999999998731 112356788899999887 7765554 36999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 585 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 585 RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|||+.+|+|||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++++
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999854 37899999999999876 99999999999999999999986
Q ss_pred cC
Q 005740 664 KG 665 (680)
Q Consensus 664 ~~ 665 (680)
..
T Consensus 228 ~~ 229 (266)
T 2yz2_A 228 KY 229 (266)
T ss_dssp HS
T ss_pred Cc
Confidence 53
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-50 Score=415.59 Aligned_cols=217 Identities=26% Similarity=0.399 Sum_probs=188.5
Q ss_pred cccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 432 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ ....+|+
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh
Confidence 457999999999963 469999999999999999999999999999999999999999999999999987 5677899
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+||||+|++.+|.+ |++||+.++.. ...+. +++.++++..++.++..+. + .+||||||||++|||
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-------~--~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR-------V--STYSKGMVRKLLIAR 159 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB-------G--GGCCHHHHHHHHHHH
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCC-------h--hhCCHHHHHHHHHHH
Confidence 99999999999876 99999988521 01222 3566677777665543322 1 369999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||+.+|++||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999999853 37899999999999887 999999999999999999999753
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-50 Score=415.93 Aligned_cols=217 Identities=30% Similarity=0.450 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC----------
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---------- 503 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~---------- 503 (680)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3899999999963 469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHhhccEEEEccCCcCccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHhcHHHH-HHcCCCCcccccCCCC
Q 005740 504 LDI---RWLREKIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 572 (680)
Q Consensus 504 ~~~---~~LR~~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~s----~eei~~A~~~a~l~df-I~~LP~G~dT~vge~~ 572 (680)
++. ..+|++||||+|++.+|.. |++||+.++. ....+ ++++.++++..++.++ ..+.| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 443 3568899999999999876 9999998851 11222 3456777888887776 44333 26
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCE
Q 005740 573 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 651 (680)
Q Consensus 573 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~ 651 (680)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+. .||+|++|++|+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 3789999999999986 599999999999
Q ss_pred EEEecChHHHhhcC
Q 005740 652 IIEVGNHAELLHKG 665 (680)
Q Consensus 652 Ive~Gth~eLl~~~ 665 (680)
|++.|+++++++..
T Consensus 231 i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 231 IEEEGDPEQVFGNP 244 (262)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999998753
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.2e-50 Score=408.65 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=178.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH---hh
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~---LR 510 (680)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -ccEEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 511 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 511 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
++|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+ .+ .+||||||||++|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgGq~qrv~l 151 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-------KP--YELSGGEQQRVAI 151 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-------CG--GGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-------Ch--hhCCHHHHHHHHH
Confidence 78999999999986 599999988521 0112 2345555555554332221 11 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecCh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth 658 (680)
||||+.+|++||||||||+||+++.+.+.+.|+++.+ +|+|+|+|||+++.++.||+|++|++|+|+++|+.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999999999864 37899999999999888999999999999999973
No 30
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.9e-50 Score=431.87 Aligned_cols=218 Identities=28% Similarity=0.490 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC--CCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~--~~~~~LR~ 511 (680)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999933 23345678
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
+||||+|++.||. .|++|||.||... ..+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 8999999999995 6999999998421 112 345677777777765544443 269999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
||+.+|++||||||||+||+.+...+++.+.++.++ .|+|+|+|||+++.+. .||||+||++|+|++.|+++|++++
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~--~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA--NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999888776543 4799999999999875 4999999999999999999999976
Q ss_pred C
Q 005740 665 G 665 (680)
Q Consensus 665 ~ 665 (680)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.5e-50 Score=414.66 Aligned_cols=215 Identities=26% Similarity=0.411 Sum_probs=180.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhcc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 512 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~ 512 (680)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988765 346788
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCCC---C-----------CCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCCh
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 575 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~~---~-----------~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSG 575 (680)
||||+|++.+|. .|++||+.++... . .+.++.. ..+.+.++.+ |++..... .+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999885 6999999987321 1 1111111 1123334433 44433333 37999
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEE
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 654 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive 654 (680)
|||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ +|+|+|+|||+++.+. .||+|++|++|+|++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999864 3789999999999886 599999999999999
Q ss_pred ecChHHH
Q 005740 655 VGNHAEL 661 (680)
Q Consensus 655 ~Gth~eL 661 (680)
.|+++++
T Consensus 234 ~g~~~~~ 240 (257)
T 1g6h_A 234 EGRGEEE 240 (257)
T ss_dssp EEESHHH
T ss_pred EeCHHHh
Confidence 9999993
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.1e-50 Score=409.95 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=191.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.+||.++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC-
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA- 592 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~- 592 (680)
||+|++.+|.+ |++||+.++.....+++++.++++..++.++..+.| .+||||||||++|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST---------NQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBG---------GGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999998865 999999998422234677888888888765533211 3799999999999999999999
Q ss_pred ------eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 593 ------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 593 ------ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+||||||||+||+.+.+.+.+.|+++.+ +|+|+|+|||+++.+ +.||+|++|++|++++.|+++++++..
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 224 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHH
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 9999999999999999999999999853 378999999999998 569999999999999999999998633
Q ss_pred cHHHHHH
Q 005740 666 RLYAKLV 672 (680)
Q Consensus 666 g~Y~~L~ 672 (680)
.. .+.+
T Consensus 225 ~~-~~~~ 230 (249)
T 2qi9_C 225 NL-AQAY 230 (249)
T ss_dssp HH-HHHH
T ss_pred hH-HHHh
Confidence 33 4444
No 33
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.9e-50 Score=432.28 Aligned_cols=220 Identities=29% Similarity=0.469 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988765 4789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.||. .||+|||.||.. ...+. +++.++++..++.++..+.| .+||||||||+||||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHHH
Confidence 99999999995 599999998731 12233 45666777777655444333 26999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc-C
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK-G 665 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~-~ 665 (680)
+.+|++||||||||+||+.+...+.+.|+++.++ .|+|+|+|||+++.+. .||||+||++|+|++.|+++|++++ .
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 9999999999999999999999999999998642 3789999999998875 5999999999999999999999875 3
Q ss_pred cHHH
Q 005740 666 RLYA 669 (680)
Q Consensus 666 g~Y~ 669 (680)
..|.
T Consensus 227 ~~~v 230 (381)
T 3rlf_A 227 DRFV 230 (381)
T ss_dssp BHHH
T ss_pred cHHH
Confidence 3443
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.8e-50 Score=418.71 Aligned_cols=216 Identities=25% Similarity=0.400 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC--CCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~--~~~~~~LR~ 511 (680)
-|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 46999999999999999999999999999999999999999999999999998 788888999
Q ss_pred cEEEEccCCcC-ccc--cHHHHHhcCCCC------CCCH---HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 512 KIGFVGQEPQL-LQM--DIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 512 ~I~~V~Qd~~L-F~g--TI~eNI~~g~~~------~~s~---eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
+||||+|++.+ |.. |++|||.++..+ ...+ +++.++++..++.++.. ..+ .+|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~--~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-------QYI--GYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-------SBG--GGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-------CCh--hhCCHHHHH
Confidence 99999999875 555 999999987311 1122 33555555555433221 111 379999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEE--EEEecCcchHh-hcCEEEEEeCCEEEEec
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIK-AVDRIVVIDDGRIIEVG 656 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~Tv--IvIaHRlsti~-~aD~I~vl~~G~Ive~G 656 (680)
|++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ +|+|+ |+|||+++.+. .||+|++|++|+|++.|
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSD---SYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---HCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHH---CCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999864 26899 99999999974 59999999999999999
Q ss_pred ChHHHhhc
Q 005740 657 NHAELLHK 664 (680)
Q Consensus 657 th~eLl~~ 664 (680)
+++++.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99998754
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-49 Score=405.15 Aligned_cols=211 Identities=28% Similarity=0.455 Sum_probs=180.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+|+|++ +|+|+||+|++ |.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 4578999
Q ss_pred EEccCCcCccc-cHHHHHhcCCCCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
||+|++.+|.. |++||+.++.. ... ++++.++++..++.++..+.| .+||||||||++|||||++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTT
T ss_pred EEcCCCccCCCCcHHHHHHHHHH-HcCCchHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999999732 111 344555666555543322221 3799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+|++||||||||+||+++.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|+|++.|++++++++.
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999988532 3789999999999875 59999999999999999999998754
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.8e-49 Score=423.48 Aligned_cols=216 Identities=27% Similarity=0.496 Sum_probs=189.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.||. .|++|||.|+... ..+ ++++.++++..++.++..+.| .+||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 5999999997321 122 345777888887766655444 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+++|++|+||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988542 378999999999987 469999999999999999999998764
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.6e-49 Score=422.70 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=188.5
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999942 2469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred EEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
||||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+|||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 999999999996 599999998621 1122 345677777777766544444 3699999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|+.+|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|++++
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988542 3789999999999875 4999999999999999999999875
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-49 Score=425.50 Aligned_cols=216 Identities=33% Similarity=0.525 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998621 1122 235666777776655444333 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+.+|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988542 378999999999887 469999999999999999999998763
No 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-49 Score=408.35 Aligned_cols=211 Identities=24% Similarity=0.336 Sum_probs=173.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHh-hc
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 511 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~L-R~ 511 (680)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4699999999999999999999999999999999999 89999999999999998887765 55
Q ss_pred cEEEEccCCcCccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHhcHH-HHHHcCCCCcccccCCCC-CChHHHHH
Q 005740 512 KIGFVGQEPQLLQM-DIKSNIMYGCP----KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL-LSGGQKQR 580 (680)
Q Consensus 512 ~I~~V~Qd~~LF~g-TI~eNI~~g~~----~~~s----~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~-LSGGQrQR 580 (680)
.++||+|++.+|.+ |++||+.++.. .... ++++.++++..++. ++ .+..+ .+ ||||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~--~~~LSgGqkQr 151 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-------LSRYL--NEGFSGGEKKR 151 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-------GGSBT--TCC----HHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-------hcCCc--ccCCCHHHHHH
Confidence 69999999999975 99999987521 0112 12344444444431 21 12222 24 99999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEeCCEEEEecCh
Q 005740 581 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 658 (680)
Q Consensus 581 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~~G~Ive~Gth 658 (680)
++|||||+++|++||||||||+||+++.+.+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|++
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999998843 47999999999999886 599999999999999998
Q ss_pred HH
Q 005740 659 AE 660 (680)
Q Consensus 659 ~e 660 (680)
++
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.5e-49 Score=424.61 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCC--cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC---HHH
Q 005740 434 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 508 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~--VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~---~~~ 508 (680)
.|+++||+++|++ .+ +|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 46 999999999999999999999999999999999999999999999999987621 334
Q ss_pred hhccEEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 509 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
.|++||||+|++.||. .|++|||.|+... ..+ ++++.++++..++.++..+.| .+||||||||+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 5789999999999996 4999999998321 123 345677777777766544444 369999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHHH
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 661 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~eL 661 (680)
|||||+.+|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988542 3789999999999875 5999999999999999999999
Q ss_pred hhcC
Q 005740 662 LHKG 665 (680)
Q Consensus 662 l~~~ 665 (680)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8763
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-48 Score=422.91 Aligned_cols=216 Identities=30% Similarity=0.507 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 514 ~~V~Qd~~LF~-gTI~eNI~~g~~~-~~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
|||+|++.||. .|++|||.|+... ..+. +++.++++..++.++..+.| .+||||||||+||||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 5999999998421 2232 35677777777766655444 36999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 588 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 588 l~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
+++|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988542 368999999999887 469999999999999999999998763
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.2e-49 Score=420.78 Aligned_cols=214 Identities=33% Similarity=0.541 Sum_probs=187.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
|+++||+++|++ . +|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999952 4 9999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEccCCcCccc-cHHHHHhcCCC--CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 515 FVGQEPQLLQM-DIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 515 ~V~Qd~~LF~g-TI~eNI~~g~~--~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
||+|++.||.. |++|||.|+.. ....++++.++++..++.++..+.| .+||||||||+||||||+++|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999999965 99999998621 0112367888888887765544433 369999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl~~~ 665 (680)
++|+||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998643 378999999999876 569999999999999999999998753
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.8e-48 Score=421.58 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC------CCHH
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 507 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~------~~~~ 507 (680)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999963 469999999999999999999999999999999999999999999999999876 543
Q ss_pred HhhccEEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005740 508 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 581 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI 581 (680)
.+++||||+|++.|| +.|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 367899999999999 4699999998621 1122 235667777777665544433 36999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcCEEEEEeCCEEEEecChHH
Q 005740 582 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 660 (680)
Q Consensus 582 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD~I~vl~~G~Ive~Gth~e 660 (680)
||||||+.+|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999988542 3789999999999875 599999999999999999999
Q ss_pred HhhcC
Q 005740 661 LLHKG 665 (680)
Q Consensus 661 Ll~~~ 665 (680)
++++.
T Consensus 227 l~~~p 231 (372)
T 1g29_1 227 VYDKP 231 (372)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 98753
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.4e-47 Score=398.05 Aligned_cols=217 Identities=25% Similarity=0.315 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC--CCCCCceEEECCeeCCCCCHHHh-h
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 510 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~--y~p~~G~I~idG~di~~~~~~~L-R 510 (680)
-|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999 67999999999999988887665 4
Q ss_pred ccEEEEccCCcCccc-cHHHHHhcCC--------CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC---C-CCChHH
Q 005740 511 EKIGFVGQEPQLLQM-DIKSNIMYGC--------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---D-LLSGGQ 577 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~g-TI~eNI~~g~--------~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge---~-~LSGGQ 577 (680)
+.|+||+|++.+|.+ |++||+.++. .+..++++..+ .+.+.++.+ |+++...+ . +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999999865 8999997631 11223332221 122233332 34332222 2 499999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh--cCEEEEEeCCEEEEe
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEV 655 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~--aD~I~vl~~G~Ive~ 655 (680)
|||++|||||+++|+|||||||||+||+++.+.+.+.|+++.+ +|+|+|+|||++..+.. ||+|++|++|+|++.
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999988742 47999999999999876 899999999999999
Q ss_pred cChHHHhh
Q 005740 656 GNHAELLH 663 (680)
Q Consensus 656 Gth~eLl~ 663 (680)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99998753
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-47 Score=395.96 Aligned_cols=204 Identities=26% Similarity=0.402 Sum_probs=175.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 24699999999999999999999999999999999999999999998 46789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC--C----CC---HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005740 514 GFVGQEPQLL-QMDIKSNIMYGCPK--D----VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 583 (680)
Q Consensus 514 ~~V~Qd~~LF-~gTI~eNI~~g~~~--~----~s---~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI 583 (680)
|||+|++.+| ..|++||+.++... . .. ++++.++++..++.++..+.| .+||||||||++|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF---------TSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh---------hhCCHHHHHHHHH
Confidence 9999999988 77999999997311 0 11 245667777776655433211 3799999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hhcCEEEEEeCCEEEEecChHHHh
Q 005740 584 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 584 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~aD~I~vl~~G~Ive~Gth~eLl 662 (680)
||||+.+|++||||||||+||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+ +.||+|++|++|+ ++.|++++++
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998642 378999999999998 5699999999999 9999999987
Q ss_pred hc
Q 005740 663 HK 664 (680)
Q Consensus 663 ~~ 664 (680)
+.
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.1e-48 Score=398.41 Aligned_cols=209 Identities=21% Similarity=0.303 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCC-CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 435 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~-~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
|+++||+++|++. .++++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.+||.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999999765 34 7899
Q ss_pred E-EEccCCcCccccHHHHHhcCCC-CCCCHHHHHHHHHHhcHH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 514 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~-~V~Qd~~LF~gTI~eNI~~g~~-~~~s~eei~~A~~~a~l~-dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
+ ||+|++.+ +.|++||+.++.. .+..++++.++++..++. ++..+ .+ .+||||||||++|||||+++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~~--~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR-------KL--YKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGS-------BG--GGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcC-------Ch--hhCCHHHHHHHHHHHHHHhC
Confidence 9 99999999 9999999998621 134566777777776654 32211 11 37999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh-hcC-EEEEEeCCEEEEecChHHHhhc
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVD-RIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~-~aD-~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
|++||||||||+||+++.+.+.+.|+++. + |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998862 3 9999999999875 699 9999999999999999999853
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-46 Score=378.11 Aligned_cols=197 Identities=24% Similarity=0.366 Sum_probs=166.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+.
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3699999999995 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred EEEEccCCcCccc-cHHHHHhcCCC--C-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005740 513 IGFVGQEPQLLQM-DIKSNIMYGCP--K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 586 (680)
Q Consensus 513 I~~V~Qd~~LF~g-TI~eNI~~g~~--~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARA 586 (680)
|+||+|++.+|.+ |++||+.++.. . ...++++.++++..++ +.. +. .+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHH
Confidence 9999999999976 99999988621 0 1235566667666543 333 22 3799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEE
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 653 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Iv 653 (680)
|+++|++||||||||+||+++.+.+.+.|+++.+ +|+|+|++||+++.+..++..+++..|+|-
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999999999998853 268999999999999885555567677763
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=6.2e-46 Score=390.62 Aligned_cols=241 Identities=15% Similarity=0.174 Sum_probs=201.6
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccEEEEEEEEE
Q 005740 364 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 443 (680)
Q Consensus 364 lv~~g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 443 (680)
-...+..+-+.+.+|+.+..+ ..++..++..+..++++..+.+|+.++++.+++.... .. ..+...+.|+|+||+|+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-EG-SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-SC-CTHHHHHHHHHTTCCHH
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC-cccccCCeEEEEEEEEE
Confidence 345566677888899888766 4788899999999999999999999999875432111 11 11122346999999999
Q ss_pred cCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc
Q 005740 444 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 523 (680)
Q Consensus 444 Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF 523 (680)
|+ .++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 96 36999999999999999999999999999999999999 8999 46789999999
Q ss_pred cccHHH-HHhcCCCCCCCHHHHHHHHHHhcHHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 524 QMDIKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 524 ~gTI~e-NI~~g~~~~~s~eei~~A~~~a~l~dfI~~-LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
.+|++| ||.|+ + ++++ +++++++. ||+||| ..+|||||||| |||++++|+||| ||
T Consensus 166 ~~ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 166 LASLADTRAALV-D-DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred cccHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 999998 99998 3 5554 45788888 999999 45899999999 999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHHHhh
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 676 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 676 (680)
+||+++|+.|.+ ++||+++++.||+| ||++|+|++.|+|+|| ++.|+++|+.+.
T Consensus 223 ~LD~~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 223 NIDVQAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp SSCSTTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred CCCHHHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 999999987741 39999999999999 9999999999999999 789999987653
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-37 Score=356.76 Aligned_cols=203 Identities=28% Similarity=0.344 Sum_probs=167.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 4899999999953 3799999999999999999999999999999999999999999986 2479
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
|||||++.+ ++.|+.||+... ......++.+.++++..++.++ .+..+ .+||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-------YDRNV--EDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-------TTSBG--GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-------hcCCh--hhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 678999998754 1100112334445444443221 22222 379999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC--CEEEEecChHHHhhc
Q 005740 592 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 664 (680)
Q Consensus 592 ~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~--G~Ive~Gth~eLl~~ 664 (680)
++||||||||+||+++...+.+.|+++.++ .|+|+|+|+|++..+.. ||||++|++ |++++.|++++++..
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999999999999999999988532 37899999999999875 999999996 889999999998753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-37 Score=349.67 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=167.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.++++|++++|++ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++| +.|
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999963 468889999999999999999999999999999999999999999875 368
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCC--CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g~~~~--~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
+|++|++.. |..|++||+.+..... ...+.+.++++..++.++..+ .+ .+||||||||++|||||+++
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES-------NV--NDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTS-------BG--GGCCHHHHHHHHHHHHHHSC
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcC-------Ch--hhCCHHHHHHHHHHHHHHcC
Confidence 999999874 5889999998752211 223345555555555432211 11 37999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC--CEEEEecChHHHhh
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLH 663 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~--G~Ive~Gth~eLl~ 663 (680)
|+||||||||++||+.+...|.+.|+++.++ .|+|+|+|||+++.+.. ||||+||++ |++...|++.++..
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999998643 47899999999999876 999999986 66777788766654
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.1e-38 Score=354.20 Aligned_cols=200 Identities=29% Similarity=0.329 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999953 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHcc
Q 005740 514 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 514 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~ 589 (680)
|||+|++.+ ++.|+.||+... ......++.+.++++..+ +...... ..||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 678999998753 110011233333333333 3222222 3799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC--CEEEEecChHHHhh
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLH 663 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~--G~Ive~Gth~eLl~ 663 (680)
+|++|||||||++||..+...|.+.|+++.++ .|+|+|+|||++..+.. ||||++|++ |++++.|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999987531 36899999999999875 999999996 88999999998875
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.5e-36 Score=359.45 Aligned_cols=195 Identities=26% Similarity=0.464 Sum_probs=151.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
-|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|. ..|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 38999999999753 257999999999999999999999999999999999999999999999872 148
Q ss_pred EEEccCCcC-----ccccHHHHHhc-------------------------------------------------------
Q 005740 514 GFVGQEPQL-----LQMDIKSNIMY------------------------------------------------------- 533 (680)
Q Consensus 514 ~~V~Qd~~L-----F~gTI~eNI~~------------------------------------------------------- 533 (680)
+||+|++.. ++.|+++|+.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887632 23455555532
Q ss_pred -----------CCC----------------------------------------CCCCHHHHHHHHHHhcHHHHHHcCCC
Q 005740 534 -----------GCP----------------------------------------KDVKNEDIEWAAKQAYVHEFILSLPC 562 (680)
Q Consensus 534 -----------g~~----------------------------------------~~~s~eei~~A~~~a~l~dfI~~LP~ 562 (680)
+.. ....++++.+.++..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l----------- 887 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML----------- 887 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT-----------
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc-----------
Confidence 100 000122233333333
Q ss_pred Cccccc--CC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH
Q 005740 563 GYETLV--DD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 563 G~dT~v--ge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
|++... .. .+||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ ++|+|+|||+++.+
T Consensus 888 GL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v 961 (986)
T 2iw3_A 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFT 961 (986)
T ss_dssp TCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHH
T ss_pred CCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHH
Confidence 333322 11 379999999999999999999999999999999999999999888654 46999999999998
Q ss_pred h-hcCEEEEEeCCEEEEecC
Q 005740 639 K-AVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 639 ~-~aD~I~vl~~G~Ive~Gt 657 (680)
. .||+|++|++|+|++.|+
T Consensus 962 ~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 962 KNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TTTCCEEECCBTTBCCC---
T ss_pred HHhCCEEEEEECCEEEEeCC
Confidence 6 599999999999998775
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.8e-36 Score=349.58 Aligned_cols=205 Identities=30% Similarity=0.384 Sum_probs=151.1
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh---------------------cCCCCCCceEEECCeeCCCCCHHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---------------------RLYEPSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~---------------------r~y~p~~G~I~idG~di~~~~~~~ 508 (680)
.++|+||||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998764 223445678999999987654221
Q ss_pred hhc-----------------------------------------cEEEEccCCcCc------------------------
Q 005740 509 LRE-----------------------------------------KIGFVGQEPQLL------------------------ 523 (680)
Q Consensus 509 LR~-----------------------------------------~I~~V~Qd~~LF------------------------ 523 (680)
.+. ..|++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 123333333222
Q ss_pred ---------cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCC-
Q 005740 524 ---------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP- 591 (680)
Q Consensus 524 ---------~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p- 591 (680)
+.|++||+.+.. .....++..++++..++ ++ ...+. .+||||||||++|||||+.+|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~l~~~~l---------~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFA-SIPKIKRKLETLYDVGL---------GY-MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTT-TCHHHHHHHHHHHHTTC---------TT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHHH-HhhhHHHHHHHHHHcCC---------ch-hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 458888988762 11111222223222221 11 12233 379999999999999999887
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE------eCCEEEEecChHHHhh
Q 005740 592 --AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 663 (680)
Q Consensus 592 --~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~ 663 (680)
+|||||||||+||+.+.+.|.+.|+++.+ +|+|+|+|||+++.++.||+|+|| ++|+|+++|+++|+.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 59999999999999999999999999864 379999999999999999999999 8999999999999987
Q ss_pred cCcHH
Q 005740 664 KGRLY 668 (680)
Q Consensus 664 ~~g~Y 668 (680)
....|
T Consensus 641 ~~~~~ 645 (670)
T 3ux8_A 641 VKESH 645 (670)
T ss_dssp CTTCH
T ss_pred CCccH
Confidence 65444
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.6e-36 Score=347.89 Aligned_cols=205 Identities=24% Similarity=0.393 Sum_probs=138.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHH---------------------HHHhcCCCCC-------CceEEECCeeC
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPL 501 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~---------------------~LL~r~y~p~-------~G~I~idG~di 501 (680)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 9999999999 56677777665
Q ss_pred CCCCHHHhhccEEEEccCCcCc--------------------cccHHHHHhcCCCCCCCH--HH-----HHHHHHHhcHH
Q 005740 502 TDLDIRWLREKIGFVGQEPQLL--------------------QMDIKSNIMYGCPKDVKN--ED-----IEWAAKQAYVH 554 (680)
Q Consensus 502 ~~~~~~~LR~~I~~V~Qd~~LF--------------------~gTI~eNI~~g~~~~~s~--ee-----i~~A~~~a~l~ 554 (680)
.. ..|+.+++|+|.+.++ ..|++||+.+.......+ .+ +.++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 43 2355667777665443 458999998852111111 11 11112222
Q ss_pred HHHHcCCCCccccc-CC--CCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEE
Q 005740 555 EFILSLPCGYETLV-DD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629 (680)
Q Consensus 555 dfI~~LP~G~dT~v-ge--~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvI 629 (680)
+.+..+ |++... .. ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++.+ +|+|+|
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi 258 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLI 258 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEE
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEE
Confidence 223332 332221 11 2799999999999999999998 9999999999999999999999999864 379999
Q ss_pred EEecCcchHhhcCEEEEE------eCCEEEEecChHHHhhcCc
Q 005740 630 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 666 (680)
Q Consensus 630 vIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~g 666 (680)
+|+|+++.+..||+|++| ++|+|++.|+++++.+...
T Consensus 259 ~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 259 VVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp EECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred EEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999999999999999 8999999999999987654
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-36 Score=340.74 Aligned_cols=202 Identities=22% Similarity=0.336 Sum_probs=165.6
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCC-----cEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~G-----e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
++++|+|++. ..+++|+||++++| |++||+||||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6788999752 35899999999999 7899999999999999999999999999972 21 346
Q ss_pred EEEEccCCc-CccccHHHHHhcCCCC-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 513 IGFVGQEPQ-LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 513 I~~V~Qd~~-LF~gTI~eNI~~g~~~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
++|++|+.. .|.+|++||+...... ....+.+.++++..++.++ .+..+ ..||||||||++|||||+.+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~--~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQEV--QHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSSBS--SSCCHHHHHHHHHHHHTTSC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcCCh--hhCCHHHHHHHHHHHHHHhC
Confidence 999999976 5689999998653211 1234445556666554322 22222 36999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC--CEEEEecChHHHhhcC
Q 005740 591 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG 665 (680)
Q Consensus 591 p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~--G~Ive~Gth~eLl~~~ 665 (680)
|+||||||||++||+.+...+.+.|+++.++ .|+|+|+|||++..+.. ||||+||++ |+++..|++++++...
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~--~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999999999999999999987532 37899999999999875 999999997 9999999999999753
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.1e-36 Score=343.52 Aligned_cols=194 Identities=25% Similarity=0.281 Sum_probs=156.8
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE---------EECCeeCCCCCHH-
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDLDIR- 507 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I---------~idG~di~~~~~~- 507 (680)
+||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++.++...
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999642 25899999 999999999999999999999999999999999996 4567655432111
Q ss_pred -HhhccEEEEccCCc----CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 508 -WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 508 -~LR~~I~~V~Qd~~----LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
..+..+++++|+.. ++.+|++||+... . .++++.++++..++.++. |..+ .+||||||||++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-~---~~~~~~~~L~~lgL~~~~-------~~~~--~~LSGGekQRva 238 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-D---EVGKFEEVVKELELENVL-------DREL--HQLSGGELQRVA 238 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-C---CSSCHHHHHHHTTCTTGG-------GSBG--GGCCHHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhh-H---HHHHHHHHHHHcCCCchh-------CCCh--hhCCHHHHHHHH
Confidence 12346889998743 4557999999753 1 134566777776654332 2222 269999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCC
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 650 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G 650 (680)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +|+|+|+|+|+++.+.. ||+|++|++|
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999999864 37899999999998865 9999999864
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.2e-36 Score=339.15 Aligned_cols=197 Identities=24% Similarity=0.284 Sum_probs=155.4
Q ss_pred EEE-EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE---------EECCeeCCCC
Q 005740 435 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 504 (680)
Q Consensus 435 I~f-~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I---------~idG~di~~~ 504 (680)
.++ +||+++|++. ..+|+|+| +|++||++|||||||||||||+++|+|+++|++|++ .++|.++.+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5899999642 25899999 999999999999999999999999999999999996 4567655432
Q ss_pred CHHH--hhccEEEEccCCcC----ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHH
Q 005740 505 DIRW--LREKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 505 ~~~~--LR~~I~~V~Qd~~L----F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr 578 (680)
.... .+..+++++|+..+ +.+|++||+... . ..+++.++++..++.+. .+..+ .+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~-~---~~~~~~~~l~~lgl~~~-------~~~~~--~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA-D---ETGKLEEVVKALELENV-------LEREI--QHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH-C---SSSCHHHHHHHTTCTTT-------TTSBG--GGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh-h---HHHHHHHHHHHcCCChh-------hhCCh--hhCCHHHH
Confidence 1111 23468999997654 346999998643 1 13456667777665322 22222 26999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCC
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 650 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G 650 (680)
||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ .|+|+|+|+|++..+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999864 37899999999999876 9999999865
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.6e-34 Score=337.47 Aligned_cols=199 Identities=27% Similarity=0.365 Sum_probs=165.8
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
..|...|++++|++ +++|+|+||+|++||++||+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 36888899999964 469999999999999999999999999999999995 665 6655421 124
Q ss_pred EEEEccCC-cC-ccccHHHHHhcCCCCCCCHHHHHHHHHHhcH-HHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 513 IGFVGQEP-QL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 513 I~~V~Qd~-~L-F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l-~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
++|++|++ .+ ...|+.||+.+. .... ++++.++++..++ .+...+.+ ..||||||||++|||||+.
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 78999985 34 467999999863 1122 7788889999888 45544322 2599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE-EecChHHHhhcC
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKG 665 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv-e~Gth~eLl~~~ 665 (680)
+|+|||||||||+||+.+.+.+.+.|++ .|+|+|+|+|++..+.. ||+|++|++|+++ ..|+++++++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~ 637 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 637 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHC
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhh
Confidence 9999999999999999999999999877 16899999999999875 9999999999997 589999987643
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-34 Score=341.98 Aligned_cols=208 Identities=29% Similarity=0.412 Sum_probs=157.8
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHH---------HHHhcCCCCC------Cc------eEEECCeeCCCCCH---
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLDI--- 506 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~---------~LL~r~y~p~------~G------~I~idG~di~~~~~--- 506 (680)
++|+||||+|++|+.+||+|+||||||||+ +++.+...+. +| .|.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 4555544333 33 36666666543221
Q ss_pred -------HHh-------------------------------hccEEEEccCCcCcc------------------------
Q 005740 507 -------RWL-------------------------------REKIGFVGQEPQLLQ------------------------ 524 (680)
Q Consensus 507 -------~~L-------------------------------R~~I~~V~Qd~~LF~------------------------ 524 (680)
+.+ ++..|++.|+..++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 111 134577888776553
Q ss_pred ---------ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCC--
Q 005740 525 ---------MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP-- 591 (680)
Q Consensus 525 ---------gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p-- 591 (680)
.|+.||+.+.. .....++..++++.+++ || ..+|. .+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~-~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFK-NIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTT-TCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHh-cchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 46667776652 12222334444444443 33 23455 489999999999999999876
Q ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE------eCCEEEEecChHHHhhc
Q 005740 592 -AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 664 (680)
Q Consensus 592 -~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~ 664 (680)
+||||||||++||+.+++.+++.|+++.+ +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++.
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 79999999999999999999999999864 379999999999999999999999 89999999999999998
Q ss_pred CcHHHHHH
Q 005740 665 GRLYAKLV 672 (680)
Q Consensus 665 ~g~Y~~L~ 672 (680)
.+.|..-+
T Consensus 904 ~~syt~~~ 911 (916)
T 3pih_A 904 PHSYTGRF 911 (916)
T ss_dssp TTCHHHHH
T ss_pred CchHHHHH
Confidence 77775543
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=323.60 Aligned_cols=197 Identities=22% Similarity=0.324 Sum_probs=154.0
Q ss_pred EEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE-----------EECCeeCCCCCHH
Q 005740 439 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDIR 507 (680)
Q Consensus 439 nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-----------~idG~di~~~~~~ 507 (680)
||+++|... ...|++++ ++++||++||+||||||||||+++|+|+++|++|+| +++|.++.++...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 578999742 35788887 699999999999999999999999999999999998 4555554444344
Q ss_pred HhhccEE--EEccCCcC----cc---ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHH
Q 005740 508 WLREKIG--FVGQEPQL----LQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 508 ~LR~~I~--~V~Qd~~L----F~---gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr 578 (680)
.+++.+. +.+|.... +. .++.+++... . ...++++.++++..++.++..+.+ ..||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-M-EKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-C-CSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-h-hhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 4444443 33343221 12 2677777655 2 345677888888887655433322 36999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEE
Q 005740 579 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 652 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~I 652 (680)
||++|||||+.+|++||||||||+||+++...+.+.|+++.+ +|+|+|+|+|+++.+.. ||+|+||++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999999864 47899999999999876 999999998754
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.1e-33 Score=317.82 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=150.4
Q ss_pred EEEEEEcCCCCCCCcccceeEEee-CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE-----------EECCeeCCCCC
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLD 505 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~-~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-----------~idG~di~~~~ 505 (680)
++++.+|.. +-++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~----~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKV----NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESST----TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCC----CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 357789963 23555555555 899999999999999999999999999999999 67887765432
Q ss_pred HHHh------hccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 506 IRWL------REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 506 ~~~L------R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
.... +..+.++.|.+.++.+|+++++... . ..+++.++++..++.+.. |..+ ..|||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~---~~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~Q 145 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI-D---ERGKKDEVKELLNMTNLW-------NKDA--NILSGGGLQ 145 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH-C---CSSCHHHHHHHTTCGGGT-------TSBG--GGCCHHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcc-h---hHHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHH
Confidence 2222 2234455666667889999988643 1 134566677776654321 2222 369999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCE
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~ 651 (680)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+|+|+++.+.. ||+|+||++|.
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999983 37999999999998865 99999998754
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-36 Score=333.51 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=154.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc-e-EEECCeeCCCCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~-I~idG~di~~~~~~~LR~ 511 (680)
-|+++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 356666766662 79999999999999999999999999999999999999 9 99998 1 478
Q ss_pred cEEEEccCCcCcc----ccHHHHHhcCCCC--C-CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005740 512 KIGFVGQEPQLLQ----MDIKSNIMYGCPK--D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 584 (680)
Q Consensus 512 ~I~~V~Qd~~LF~----gTI~eNI~~g~~~--~-~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIA 584 (680)
.+++|||++.+|. .|++||+ ++... . ..++++.++++..+ ++......+||||||||+|||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccchhhhhHHHHHHHHHH
Confidence 8999999996653 5899999 87321 1 11223333444443 333322347999999999999
Q ss_pred HH--HccCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc------hH-hhcCE-----EE
Q 005740 585 RA--ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TI-KAVDR-----IV 645 (680)
Q Consensus 585 RA--ll~~p~I----LILDE-aTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls------ti-~~aD~-----I~ 645 (680)
|| |+++|++ ||||| |||+||+. .+.+.+.++++ ++|+|+|+|+.. .+ +.||+ |+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi 320 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF 320 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEE
Confidence 99 9999999 99999 99999999 66666666554 579999999988 43 46999 99
Q ss_pred EEe-CCEEEEecChHHHhh
Q 005740 646 VID-DGRIIEVGNHAELLH 663 (680)
Q Consensus 646 vl~-~G~Ive~Gth~eLl~ 663 (680)
+|+ +|+|+ .|+++++.+
T Consensus 321 ~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 321 FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp EECCCTTCC-CCCHHHHHH
T ss_pred EEeCCCcEE-ECCHHHHhh
Confidence 999 99999 999999864
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=7e-32 Score=316.92 Aligned_cols=219 Identities=23% Similarity=0.351 Sum_probs=159.6
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHH-HhcCC-------C----------------
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY-------E---------------- 488 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~L-L~r~y-------~---------------- 488 (680)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.|+. .
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999986 16999999999999999999999999999996 65443 2
Q ss_pred --CCCc-------eEEECCeeCCCCCH----------HHhhccEEEEcc-------------------------------
Q 005740 489 --PSDG-------QIYIDGFPLTDLDI----------RWLREKIGFVGQ------------------------------- 518 (680)
Q Consensus 489 --p~~G-------~I~idG~di~~~~~----------~~LR~~I~~V~Q------------------------------- 518 (680)
+.+| .|.+||.++..-+. +.+|+.++.+++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 2467 78999998864332 344543333222
Q ss_pred CCcCc-------------------------cccHHHHHhcCCCCCCCHHHHHH---HHHHhcHHHHHHcCCCCcccccCC
Q 005740 519 EPQLL-------------------------QMDIKSNIMYGCPKDVKNEDIEW---AAKQAYVHEFILSLPCGYETLVDD 570 (680)
Q Consensus 519 d~~LF-------------------------~gTI~eNI~~g~~~~~s~eei~~---A~~~a~l~dfI~~LP~G~dT~vge 570 (680)
|-.++ ..||.||+.+.. +|.+.. ..+...+.+.+..+--++. .++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv-----~e~l~~~~~~~~~~~~~~~L~~~gL~~~-~l~~ 726 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV-----DEAHDFFADESAIFRALDTLREVGLGYL-RLGQ 726 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH-----HHHHHHTTTSHHHHHHHHHHHHTTCTTS-BTTC
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH-----HHHHHHhhcchHHHHHHHHHHHcCCCcc-cccC
Confidence 11111 135666654331 000000 0001123345555533332 2344
Q ss_pred --CCCChHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEE
Q 005740 571 --DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 645 (680)
Q Consensus 571 --~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~ 645 (680)
..||||||||++|||||+++ |+||||||||++||..+.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|+
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEE
Confidence 38999999999999999997 699999999999999999999999999864 4799999999999999999999
Q ss_pred EE------eCCEEEEecChHHHhhcCcHH
Q 005740 646 VI------DDGRIIEVGNHAELLHKGRLY 668 (680)
Q Consensus 646 vl------~~G~Ive~Gth~eLl~~~g~Y 668 (680)
+| ++|+|++.|+++++++..+.|
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 99 799999999999999865444
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.9e-31 Score=313.56 Aligned_cols=214 Identities=28% Similarity=0.411 Sum_probs=158.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh-c----CC---CCCCc-------------
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R----LY---EPSDG------------- 492 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-r----~y---~p~~G------------- 492 (680)
.++++|++. .+|+||||+|++||.+||+|+||||||||++.|+ + .+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488998851 3699999999999999999999999999999854 2 11 12233
Q ss_pred eEEECCeeCCCCC---H-------HHhh---------ccEEEEccCCcC---------------------c---------
Q 005740 493 QIYIDGFPLTDLD---I-------RWLR---------EKIGFVGQEPQL---------------------L--------- 523 (680)
Q Consensus 493 ~I~idG~di~~~~---~-------~~LR---------~~I~~V~Qd~~L---------------------F--------- 523 (680)
.|.+||.++..-. . +..| +.+||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885321 1 1122 345788775321 1
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccc-ccCC--CCCCh
Q 005740 524 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSG 575 (680)
Q Consensus 524 -------------------------~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT-~vge--~~LSG 575 (680)
+.|+.||+.+.. +.. ++.+ ..+.+..+ |++. ..+. ..|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~~--~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SIP--KIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SCH--HHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cch--hHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 124555555541 111 1111 12345544 4444 3454 38999
Q ss_pred HHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE-----
Q 005740 576 GQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI----- 647 (680)
Q Consensus 576 GQrQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl----- 647 (680)
|||||++|||||+++| +||||||||++||+.+.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|++|
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG 925 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGG 925 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSST
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCC
Confidence 9999999999999875 99999999999999999999999999864 479999999999999999999999
Q ss_pred -eCCEEEEecChHHHhhcCcHHHH
Q 005740 648 -DDGRIIEVGNHAELLHKGRLYAK 670 (680)
Q Consensus 648 -~~G~Ive~Gth~eLl~~~g~Y~~ 670 (680)
++|+|++.|+++++.+....|..
T Consensus 926 ~~~G~Iv~~g~~~el~~~~~~~t~ 949 (972)
T 2r6f_A 926 DRGGQIVAVGTPEEVAEVKESHTG 949 (972)
T ss_dssp TSCCSEEEEESHHHHHTCTTCHHH
T ss_pred CCCCEEEEecCHHHHHhCchhHHH
Confidence 79999999999999986554433
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=5.6e-32 Score=297.48 Aligned_cols=207 Identities=17% Similarity=0.246 Sum_probs=157.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-------------------------
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE------------------------- 488 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~------------------------- 488 (680)
.++++|+ .+|+++||++++| +++||||||||||||++.|.++..
T Consensus 42 ~L~i~nf----------~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~ 110 (415)
T 4aby_A 42 RLEIRNL----------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGD 110 (415)
T ss_dssp EEEEEEE----------TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC----
T ss_pred eehhccc----------cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecC
Confidence 4666664 3799999999999 999999999999999999965553
Q ss_pred -------------CCCceEEECCeeCCCCCHHHhhcc-EEEEccCCcCccccHHHHHhcCCCCCCCH-------------
Q 005740 489 -------------PSDGQIYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVKN------------- 541 (680)
Q Consensus 489 -------------p~~G~I~idG~di~~~~~~~LR~~-I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~------------- 541 (680)
+.+|+|++||.+++..+..++++. +++++|+..++-.+-.++..+-+ ..+..
T Consensus 111 ~~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld-~~~~~~~~~~~~~~~~y~ 189 (415)
T 4aby_A 111 ESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLD-RRVTKEAQAYAAAHAAWR 189 (415)
T ss_dssp ----CEEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHH-HHhccChHHHHHHHHHHH
Confidence 558999999999987778888877 89999999998877776665531 11110
Q ss_pred -------------------------------HHHHHHHH------H-------hcHHHHHHcC--CC-------------
Q 005740 542 -------------------------------EDIEWAAK------Q-------AYVHEFILSL--PC------------- 562 (680)
Q Consensus 542 -------------------------------eei~~A~~------~-------a~l~dfI~~L--P~------------- 562 (680)
+++.+.+. . ..+.+.+..+ |+
T Consensus 190 ~~~~~~~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 269 (415)
T 4aby_A 190 EAVSRLERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEP 269 (415)
T ss_dssp HHHHHHHHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCC
Confidence 00000000 0 1112223332 21
Q ss_pred ---Cccc---ccCCC---------C-CChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCC
Q 005740 563 ---GYET---LVDDD---------L-LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKT 624 (680)
Q Consensus 563 ---G~dT---~vge~---------~-LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~ 624 (680)
|++. .++.. . ||||||||++|||||+.+| ++||||||||+||+++.+.|.+.|+++. +
T Consensus 270 ~~~g~~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~ 345 (415)
T 4aby_A 270 AAYGLSDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----D 345 (415)
T ss_dssp ETTEEEEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----T
T ss_pred CCCCCceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----C
Confidence 2222 12111 1 7999999999999999999 9999999999999999999999999984 4
Q ss_pred CeEEEEEecCcchHhhcCEEEEE----eCCEEEEec
Q 005740 625 KRTVIVIAHRLSTIKAVDRIVVI----DDGRIIEVG 656 (680)
Q Consensus 625 ~~TvIvIaHRlsti~~aD~I~vl----~~G~Ive~G 656 (680)
|+|+|+|||+++.+..||+|+|| ++|+++...
T Consensus 346 ~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 346 TRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEEE
Confidence 78999999999999999999999 999998653
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=5.5e-31 Score=310.69 Aligned_cols=217 Identities=23% Similarity=0.356 Sum_probs=157.3
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh-----cCCC---CCCce-----------
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----RLYE---PSDGQ----------- 493 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-----r~y~---p~~G~----------- 493 (680)
..++++|++. .+|+||||+|++||++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999851 3699999999999999999999999999999853 2222 23443
Q ss_pred --EEECCeeCCCCC---H-------HHhh---------ccEEEEccCCcC---------------------c--------
Q 005740 494 --IYIDGFPLTDLD---I-------RWLR---------EKIGFVGQEPQL---------------------L-------- 523 (680)
Q Consensus 494 --I~idG~di~~~~---~-------~~LR---------~~I~~V~Qd~~L---------------------F-------- 523 (680)
|.+||.++..-. + +..| +..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 566776664221 1 1122 345777775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccc-ccCC--CCCC
Q 005740 524 --------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLS 574 (680)
Q Consensus 524 --------------------------~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT-~vge--~~LS 574 (680)
+.|+.||+.+.. +.. ++.+ ..+.+..+ |+.. ..+. ..||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~--~~~--~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE--PIA--GVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST--TCH--HHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhh--cch--HHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 124445555431 111 1111 12344444 4444 3454 3899
Q ss_pred hHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE----
Q 005740 575 GGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI---- 647 (680)
Q Consensus 575 GGQrQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl---- 647 (680)
||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|++|
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~g 942 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD---KGNTVIVIEHNLDVIKTSDWIIDLGPEG 942 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEECCCc
Confidence 99999999999999875 99999999999999999999999999864 479999999999999999999999
Q ss_pred --eCCEEEEecChHHHhhcCcHHHHHH
Q 005740 648 --DDGRIIEVGNHAELLHKGRLYAKLV 672 (680)
Q Consensus 648 --~~G~Ive~Gth~eLl~~~g~Y~~L~ 672 (680)
++|+|++.|+++++.+....|...+
T Consensus 943 g~~~G~Iv~~G~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 943 GAGGGTVVAQGTPEDVAAVPASYTGKF 969 (993)
T ss_dssp TTSCSEEEEEECHHHHHHCTTCHHHHH
T ss_pred CCCCCEEEEecCHHHHHhCCHHHHHHH
Confidence 6999999999999998765554433
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.1e-29 Score=268.32 Aligned_cols=200 Identities=24% Similarity=0.313 Sum_probs=145.9
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC------------------------------------------------
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL------------------------------------------------ 486 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~------------------------------------------------ 486 (680)
++++++.+| .++|+||||||||||++.|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 9999999999999999999843
Q ss_pred --CCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHHHHHhcCCCCCC---------------CHHHHHHHH
Q 005740 487 --YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDV---------------KNEDIEWAA 548 (680)
Q Consensus 487 --y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~---------------s~eei~~A~ 548 (680)
+.+.+|++++||.+++.-+...+++.+++.+|+..++ .|+|.+|+... +.+- +.+++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3455689999999987667777888899999998766 99999999875 3110 011122221
Q ss_pred HHh------------cH-HHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCC
Q 005740 549 KQA------------YV-HEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARAIL----RDPAILLLDEATSAL 603 (680)
Q Consensus 549 ~~a------------~l-~dfI~~LP~G~dT~vge--------~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaL 603 (680)
... .+ .+....++.|+++.+++ ..||||||||++|||||. ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 01123466788876532 279999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEE--EEEeCCEEE-EecChHH
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRII-EVGNHAE 660 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I--~vl~~G~Iv-e~Gth~e 660 (680)
|+.+.+.+.+.|+++. +++|+|+|||+.+.+..||++ ++|++|+.. ...+-+|
T Consensus 255 D~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999998873 468999999999988999987 888888653 3334344
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=4.5e-32 Score=289.70 Aligned_cols=207 Identities=13% Similarity=0.156 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCccccccccc-ccccccEE---------E
Q 005740 369 QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQ---------F 437 (680)
Q Consensus 369 ~is~G~l~af~~~~~~l~~~~~~l~~-~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~g~I~---------f 437 (680)
.+|.|++.+|+.+...+..+ .+.. ....+..+..+.+|+.++++.|.. ......... ....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999988876554433 1211 111222223345677777754332 111001111 11134566 8
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEc
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 517 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~ 517 (680)
+||+| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|+.+++++
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 88888 7 259999999999999999999999999999999999999999999999976 444445677777764
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 518 Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
| |||+||++|||||.++|++||||
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 1 89999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 598 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 598 EaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
|||+. .+.+.|+++.. .+.|+|+++|++++...||||++|++|+.
T Consensus 248 E~~~~-------e~~~~l~~~~~---g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCS---GHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCST-------HHHHHHHHHHT---TCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CCChH-------HHHHHHHHHhc---CCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99982 24566666642 24589999999999999999999999863
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=3.6e-30 Score=257.24 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=104.6
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
+.+|+|| ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++||||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589996 89999999999999999999999999 99999994 334432 2235688999999997 67
Q ss_pred HH-hcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 530 NI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 530 NI-~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
|+ .++. +. .+.+........+.+.++. |+ |||||++|||||+.+|++||||||||+ +.
T Consensus 78 nl~~~~~-~~--~~~~~~~~~~~~~~~~l~~---gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 78 KIDPYLR-PL--HDALRDMVEPEVIPKLMEA---GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp --CTTTH-HH--HHHHTTTSCTTHHHHHHHT---TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHH-HH--HHHHHHhccHHHHHHHHHh---CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 77 4431 00 0000000001123333332 22 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEE
Q 005740 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 652 (680)
Q Consensus 609 ~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~I 652 (680)
+.+.+.|+++ + +|+|+| |||+++.+. ++...+||..
T Consensus 137 ~~l~~~l~~l-~---~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 137 AQMKMFLTRL-G---FGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHTTB-C---TTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHh-c---CCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8888888776 2 478999 999988654 4555667754
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=7.6e-31 Score=264.11 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=123.3
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH-HHhhccEEEEccCCcCcc-----
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ----- 524 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~-~~LR~~I~~V~Qd~~LF~----- 524 (680)
.-|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |+++...+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 888755432 346788999999886663
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHH-----HHHHccCCCe
Q 005740 525 ------MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAI 593 (680)
Q Consensus 525 ------gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaI-----ARAll~~p~I 593 (680)
+++.+| .||. +++++.++++... ...+ +..||||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~------------~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK------------ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC------------EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC------------cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 445555 4452 2455655555322 1111 25799999999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeC
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 649 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~ 649 (680)
++|||||+++|.++|..|++.+.+..+ ++| ++| +..||.|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~----~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI----ELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH----HHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----HHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988754 356 788 678999998875
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=2.6e-28 Score=236.19 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=110.3
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc--CccccHHHHHh
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LLQMDIKSNIM 532 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~--LF~gTI~eNI~ 532 (680)
||||++++||.++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.++..+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999652 2221 2334454 56777752 2222222221
Q ss_pred cCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH---
Q 005740 533 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE--- 608 (680)
Q Consensus 533 ~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE--- 608 (680)
...+ ...+..|+.+.+.. ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 63 ------------~~~~--------~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 63 ------------HYIV--------SKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHHH--------HHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHHH--------HHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1111 11233577777766 36799999999999999999999999999999999955
Q ss_pred -------------HHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEE
Q 005740 609 -------------HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 644 (680)
Q Consensus 609 -------------~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I 644 (680)
+.+.+.++++.+ +|.|+|+|+|+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence 777777766653 378999999999999988775
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=6.6e-26 Score=245.35 Aligned_cols=80 Identities=29% Similarity=0.456 Sum_probs=75.0
Q ss_pred CCChHHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEE
Q 005740 572 LLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 645 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~ 645 (680)
+||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ .|+|+|+|+|+++.++.||+|+
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEEE
Confidence 79999999999999999 79999999999999999999999999998853 4799999999999999999999
Q ss_pred EEeCCEEEE
Q 005740 646 VIDDGRIIE 654 (680)
Q Consensus 646 vl~~G~Ive 654 (680)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999985
No 73
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=7.4e-28 Score=265.97 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=158.2
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe---eCCCCC----
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLD---- 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~---di~~~~---- 505 (680)
+.++++||++.|+. +..||+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999963 24699999 999999999999999999999999999999999999999998 565432
Q ss_pred -HHHhhccEEEEccC--CcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcc--cccCC-CCCChHHHH
Q 005740 506 -IRWLREKIGFVGQE--PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE--TLVDD-DLLSGGQKQ 579 (680)
Q Consensus 506 -~~~LR~~I~~V~Qd--~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~d--T~vge-~~LSGGQrQ 579 (680)
...+++.|+||+|+ +....-|+.+|+.+.. |... . .|.+ -.+.. .+||||| |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~------------~--~~~~v~~~ld~l~~lS~g~-q 264 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFR------------D--RGQHVLLIMDSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHH------------T--TTCEEEEEEECHHHHHHHH-H
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHH------------h--CCCCHHHHHHhHHHHHHHH-H
Confidence 45689999999995 3344678888887641 1111 0 1111 11112 3799999 9
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccC-CCCe-----EEEEEecCcchHhhcCEEEEEeCCEEE
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRII 653 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~-~~~~-----TvIvIaHRlsti~~aD~I~vl~~G~Iv 653 (680)
|++|| +++|++ |++||+.+...+.+.++++.+.. ..|+ |++++||+++ ...||++++|++|+|+
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIV 334 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEE
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEE
Confidence 99999 999999 99999999999999998874310 0264 9999999999 7889999999999999
Q ss_pred EecChHHHhh
Q 005740 654 EVGNHAELLH 663 (680)
Q Consensus 654 e~Gth~eLl~ 663 (680)
+.|+++++..
T Consensus 335 l~~~~~~~~~ 344 (438)
T 2dpy_A 335 LSRRLAEAGH 344 (438)
T ss_dssp ECHHHHHTTC
T ss_pred EeCCHHHccC
Confidence 9999988854
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=4.2e-27 Score=229.43 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=106.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 544 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei 544 (680)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ ++.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-F------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET-T------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh-c------
Confidence 689999999999999999999995 678888765544335688999999987 333443 2200 0
Q ss_pred HHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH-----HccCCCeEEEeC--CCCCCCHHHHHHHHHHH
Q 005740 545 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVL 615 (680)
Q Consensus 545 ~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARA-----ll~~p~ILILDE--aTSaLD~~tE~~I~~~l 615 (680)
.+ .+..++. .+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.+
T Consensus 64 ---------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 64 ---------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ---------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ---------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00 0133454 3899999999999996 999999999999 99999999999888877
Q ss_pred HHHhccCCCCeEEEEEec---CcchHhh-cCEEEEEeCCEEEE
Q 005740 616 HALRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE 654 (680)
Q Consensus 616 ~~l~~~~~~~~TvIvIaH---Rlsti~~-aD~I~vl~~G~Ive 654 (680)
++ .+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 127 ~~------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 54 2567999996 5555554 676 6677776
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=5.5e-27 Score=256.30 Aligned_cols=171 Identities=20% Similarity=0.234 Sum_probs=136.6
Q ss_pred CcccceeEEeeCCc--------------------EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhh
Q 005740 451 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 451 ~VL~~isl~I~~Ge--------------------~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR 510 (680)
.+|+||||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998763 2
Q ss_pred ccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHHc
Q 005740 511 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 588 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGG--QrQRIaIARAll 588 (680)
+ ++++|++...+-|+.||+.++. + ++++.+.++..++.+ ++..+ .|||| ||||++||||+.
T Consensus 110 ~--~~v~q~~~~~~ltv~D~~g~~~-~---~~~~~~~L~~~~L~~--------~~~~~---~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 E--RHPYKHPNIPNVVFWDLPGIGS-T---NFPPDTYLEKMKFYE--------YDFFI---IISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp C--CEEEECSSCTTEEEEECCCGGG-S---SCCHHHHHHHTTGGG--------CSEEE---EEESSCCCHHHHHHHHHHH
T ss_pred e--EEeccccccCCeeehHhhcccc-h---HHHHHHHHHHcCCCc--------cCCeE---EeCCCCccHHHHHHHHHHH
Confidence 2 7899998655789999998873 2 234666666666432 22222 28999 999999999999
Q ss_pred c----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhc----c--CCCCeEEEEEecCcch--Hhh-cCEEE
Q 005740 589 R----------DPAILLLDEATSALDSESEHYVKGVLHALRN----D--CKTKRTVIVIAHRLST--IKA-VDRIV 645 (680)
Q Consensus 589 ~----------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~----~--~~~~~TvIvIaHRlst--i~~-aD~I~ 645 (680)
+ +|++++|||||++||+.+++++.+.++++.. + ....+++++-||.++. +.. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 9999999999999999999999999988741 1 1123677788999885 554 77774
No 76
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.90 E-value=4e-27 Score=227.95 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=90.6
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeCCCCC---HHHhh-ccEE----EEccCCcCccccHHHHHh
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 532 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di~~~~---~~~LR-~~I~----~V~Qd~~LF~gTI~eNI~ 532 (680)
+++||||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999999 899999999998887 78898 5788 899999998 221
Q ss_pred cCCCCCCCHHHHHHHHHHhcHHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 533 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 533 ~g~~~~~s~eei~~A~~~a~l~dfI~~-LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
+ ++++ .|++++++.+ +| ||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -~------~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V------SEEE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C------CHHH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C------Chhh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccC
Confidence 1 1222 8899999999 99 999999997 9999999999999999999873
No 77
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=8.9e-24 Score=248.31 Aligned_cols=91 Identities=25% Similarity=0.428 Sum_probs=85.8
Q ss_pred CCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE-
Q 005740 571 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 647 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl- 647 (680)
..|||||||||+|||||.++| .+|||||||++||++.-+.+.+.|+++++ .|.|+|+|+||+..++.||+|++|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lg 454 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVG 454 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeC
Confidence 389999999999999999999 59999999999999999999999999964 489999999999999999999999
Q ss_pred -----eCCEEEEecChHHHhhc
Q 005740 648 -----DDGRIIEVGNHAELLHK 664 (680)
Q Consensus 648 -----~~G~Ive~Gth~eLl~~ 664 (680)
++|+++..|+++++.+.
T Consensus 455 pgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 455 PEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SSSGGGCCSEEEEECGGGGGGC
T ss_pred CCcccCCCEEEEecCHHHHHhc
Confidence 79999999999999875
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=5e-27 Score=248.64 Aligned_cols=182 Identities=17% Similarity=0.218 Sum_probs=131.8
Q ss_pred ccccccEEEEEEEEEcCCCCCCCcccceeEE-----------------------eeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 429 QRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------IEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 429 ~~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~-----------------------I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
+...+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|
T Consensus 38 ~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 38 RGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34466799999999993 588888875 89999999999999999999999999
Q ss_pred CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcc
Q 005740 486 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 565 (680)
Q Consensus 486 ~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~d 565 (680)
+++|++|. +++++|+||+++|..|++||+.+....+..+. .....+.+++..+..|+.
T Consensus 113 ll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~ 170 (312)
T 3aez_A 113 LLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSD 170 (312)
T ss_dssp HHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCS
T ss_pred hccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCcc
Confidence 99998764 57999999999998899999976421111111 011223344554444543
Q ss_pred -cccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH--hhcC
Q 005740 566 -TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVD 642 (680)
Q Consensus 566 -T~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti--~~aD 642 (680)
..+ ..|||||+||+++|||++.+|+|||||||++.+|+... .+.+. -+ .+|+|.|..+.. +.++
T Consensus 171 ~~~~--~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~-----~D-~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 171 YACA--PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDL-----FD-FSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CEEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGG-----CS-EEEEEEECHHHHHHHHHH
T ss_pred cCCc--ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHh-----cC-cEEEEECCHHHHHHHHHH
Confidence 322 37999999999999999999999999999999986221 12222 12 457777766553 2355
Q ss_pred EEEEEeCC
Q 005740 643 RIVVIDDG 650 (680)
Q Consensus 643 ~I~vl~~G 650 (680)
|.+.+.+|
T Consensus 238 R~~~~rd~ 245 (312)
T 3aez_A 238 RFLAMRTT 245 (312)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 55444443
No 79
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.89 E-value=7.8e-27 Score=241.16 Aligned_cols=173 Identities=17% Similarity=0.233 Sum_probs=143.9
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECCeeCCCCCHHHhhccEEEEcc-----CCcCcc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQ-----EPQLLQ 524 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~~~~~~LR~~I~~V~Q-----d~~LF~ 524 (680)
++|+|+| +++|+.++|+|||||||||++++|+|+|+|+ +|+|.++|.|+..+. ++.+++|+| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4999999 9999999999999999999999999999998 999999999886543 455778889 777888
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHhc-----------------HHHHH------------HcCCCCccccc
Q 005740 525 MDIKSNIMYGCPKDV-------KNEDIEWAAKQAY-----------------VHEFI------------LSLPCGYETLV 568 (680)
Q Consensus 525 gTI~eNI~~g~~~~~-------s~eei~~A~~~a~-----------------l~dfI------------~~LP~G~dT~v 568 (680)
.+|+.+++.. |++ +.+.+..+++.+. ++..+ ..+++++++.|
T Consensus 89 ~~la~aL~~~--p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi 166 (261)
T 2eyu_A 89 DALRAALRED--PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 166 (261)
T ss_dssp HHHHHHHHHC--CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHhhC--CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEE
Confidence 9999999885 354 6666666666542 12221 13567899999
Q ss_pred CCC--CCChHHHHHHHHHHHHccCCCe--EEEeCCCCCCCHHH---------HHHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 569 DDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSES---------EHYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 569 ge~--~LSGGQrQRIaIARAll~~p~I--LILDEaTSaLD~~t---------E~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
+++ .+||| ||++|||+++.||+| +|+||+||++|... |..++++++.+. +|+|.+.+|||+
T Consensus 167 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~----~g~t~~~~a~r~ 240 (261)
T 2eyu_A 167 SQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK----QGLITLEDAMEA 240 (261)
T ss_dssp EEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH----TTSSCHHHHHHH
T ss_pred EEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH----cCCCCHHHHHHH
Confidence 985 88999 999999999999999 99999999999873 556888888874 579999999999
Q ss_pred ch
Q 005740 636 ST 637 (680)
Q Consensus 636 st 637 (680)
+.
T Consensus 241 ~~ 242 (261)
T 2eyu_A 241 SP 242 (261)
T ss_dssp CS
T ss_pred hC
Confidence 73
No 80
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.88 E-value=1.6e-26 Score=250.59 Aligned_cols=173 Identities=17% Similarity=0.229 Sum_probs=144.6
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECCeeCCCCCHHHhhccEEEEcc-----CCcCcc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQ-----EPQLLQ 524 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~~~~~~LR~~I~~V~Q-----d~~LF~ 524 (680)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677776 8999999999999999999999999999998 899988776664 3 46889999999 899999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHhcHH-----------------HHH------------HcCCCCccccc
Q 005740 525 MDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVH-----------------EFI------------LSLPCGYETLV 568 (680)
Q Consensus 525 gTI~eNI~~g~~~~~-------s~eei~~A~~~a~l~-----------------dfI------------~~LP~G~dT~v 568 (680)
++|++|+++. |++ ++++++.+++.++.. ..+ ..+++++++.|
T Consensus 200 ~~l~~~L~~~--pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED--PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC--CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC--cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999986 465 777788888877531 221 12467899999
Q ss_pred CCC--CCChHHHHHHHHHHHHccCCCe--EEEeCCCCCCCHH----H-----HHHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 569 DDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSE----S-----EHYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 569 ge~--~LSGGQrQRIaIARAll~~p~I--LILDEaTSaLD~~----t-----E~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
+++ .+||| ||++|||+++.+|+| +|+||+||+||.. + |..++++++.+ .+|+|.+.+|||+
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~g~t~~~~a~r~ 351 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY----KQGLITLEDAMEA 351 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT----TTSSSCTTTTTSS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH----HCCCCCHHHHHHH
Confidence 984 78999 899999999999999 9999999999976 3 44677777776 4689999999999
Q ss_pred ch
Q 005740 636 ST 637 (680)
Q Consensus 636 st 637 (680)
+.
T Consensus 352 ~~ 353 (372)
T 2ewv_A 352 SP 353 (372)
T ss_dssp CS
T ss_pred cC
Confidence 84
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=2.3e-22 Score=216.30 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcC
Q 005740 572 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 642 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD 642 (680)
.||||||||++|||+|+ .+||||+||||||+||+...+.+.+.+.++ +.|+|++|| ++. .||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~------~qt~i~~th-~~~--~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV------PQAIVTGTE-LAP--GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS------SEEEEEESS-CCT--TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc------CcEEEEEEe-ccc--cCC
Confidence 59999999999999999 899999999999999999999999999876 279999999 554 899
Q ss_pred EEEEEeCCEEEEecChHHHh
Q 005740 643 RIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 643 ~I~vl~~G~Ive~Gth~eLl 662 (680)
+|++|++|+|++.|+++++.
T Consensus 336 ~i~~l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQA 355 (359)
T ss_dssp EEEEEETTEEEECCCTTTSC
T ss_pred EEEEEECCEEEecCCHHHHh
Confidence 99999999999999999873
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=2.2e-24 Score=227.29 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=128.2
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----HHHh--hccEEEEccCCc-Cc-c
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-Q 524 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~----~~~L--R~~I~~V~Qd~~-LF-~ 524 (680)
++++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 45689999999999999999999999999999999999999999999986653 2334 457999999987 65 5
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC--eEEEeCCC
Q 005740 525 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEAT 600 (680)
Q Consensus 525 gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~--ILILDEaT 600 (680)
.|++||+.++...+. +. ..++.+ |....... ..|| |||++||||+..+|+ +|+|| ||
T Consensus 170 ~~v~e~l~~~~~~~~-d~---~lldt~-----------gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY-DV---VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHHTTC-SE---EEECCC-----------CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHHcCC-cc---hHHhcC-----------CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 689999987521111 10 011111 11111001 1588 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEEec---------CcchHh-hcCEEEEEeCCEEE
Q 005740 601 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIK-AVDRIVVIDDGRII 653 (680)
Q Consensus 601 SaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH---------Rlsti~-~aD~I~vl~~G~Iv 653 (680)
++||+.++. +.+.+- .+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 231 sglD~~~~~---~~~~~~-----~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 231 TGLNMLPQA---REFNEV-----VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGHHHH---HHHHHH-----TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCcCHHHHH---HHHHHh-----cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999998653 223221 3689999999 445553 47899999999754
No 83
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=7.7e-25 Score=227.30 Aligned_cols=148 Identities=19% Similarity=0.186 Sum_probs=96.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc-cHHHHHhcCCCCC--CCH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKD--VKN 541 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~--~s~ 541 (680)
++|||||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++|+|++.++.. |+.||+.||...+ ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3457889999999998854 9999999984211 112
Q ss_pred HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhcc
Q 005740 542 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 621 (680)
Q Consensus 542 eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~ 621 (680)
+.+.+.++ .++-..++ ..||||||||++||||++. +++|||||++||+... +.++.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSK- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHT-
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHh-
Confidence 23333333 33333222 1589999999999999876 9999999999999863 33444432
Q ss_pred CCCCeEEEEEecCcchHh
Q 005740 622 CKTKRTVIVIAHRLSTIK 639 (680)
Q Consensus 622 ~~~~~TvIvIaHRlsti~ 639 (680)
..++|+|.|+..++.
T Consensus 140 ---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 140 ---VVNIIPVIAKADTMT 154 (270)
T ss_dssp ---TSEEEEEETTGGGSC
T ss_pred ---cCcEEEEEeccccCC
Confidence 279999999987763
No 84
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.87 E-value=4.3e-26 Score=225.87 Aligned_cols=169 Identities=19% Similarity=0.260 Sum_probs=134.1
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCC-------------CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcccc
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 526 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-------------p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gT 526 (680)
+++|++++||||||||||||+++|+|+|+ |..|+ +||+++..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88998 699999999999999986 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH-HHccCCCeEEEeCCCCCCCH
Q 005740 527 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDS 605 (680)
Q Consensus 527 I~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR-All~~p~ILILDEaTSaLD~ 605 (680)
+.+|+ ||. ++++++++++.+.+.-+ .-.|+|+++.... |+ .|| +++++|++++|||+|+++|.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~---------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT---------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS---------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc---------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 882 57889999886432211 2245677765431 22 677 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhh
Q 005740 606 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 606 ~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
+||+.|++.|.+..++ +.++| ++ ..||+|+|+++ .+.+.++|.+
T Consensus 140 ~~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp SCHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 9999999999887532 36788 66 89999999885 2345555543
No 85
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.86 E-value=5.9e-26 Score=245.39 Aligned_cols=220 Identities=12% Similarity=0.081 Sum_probs=157.0
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccc-cccccE
Q 005740 358 VLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHV 435 (680)
Q Consensus 358 l~~g~~lv~~-g~is~G~l~af~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~g~I 435 (680)
.+.|++.+.. |.+|.|++.+|+.|...+..+ .+......+..+..+.+|+.+++ +|+........... ...+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3456666665 889999999999887665443 12222222223334567887777 33322111011111 112345
Q ss_pred ---------EEEEEEEE---cCCCCCCCcc---------cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE
Q 005740 436 ---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 494 (680)
Q Consensus 436 ---------~f~nVsF~---Y~~~~~~~VL---------~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I 494 (680)
+|+||+|+ |++. ++++| +++||+|++|+.++|+||||||||||+++|+|+|+|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 89999999 9642 23466 99999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHhhccEEEEc-cCCcC---ccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC
Q 005740 495 YIDGFPLTDLDIRWLREKIGFVG-QEPQL---LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 570 (680)
Q Consensus 495 ~idG~di~~~~~~~LR~~I~~V~-Qd~~L---F~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge 570 (680)
.++|. .++....+|+++++|+ |++.+ +..|+++||+++. ...+|..+..+++.+.+++++..+|.|++|.+++
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l-~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL-RMKPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHT-TSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHH-hcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 99985 5677777889999999 99887 8999999999984 3455555566667788899999999999999987
Q ss_pred --CCCChHHHHHHHHHH
Q 005740 571 --DLLSGGQKQRIAIAR 585 (680)
Q Consensus 571 --~~LSGGQrQRIaIAR 585 (680)
.+-+.+..+|++...
T Consensus 284 ~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 284 CHAGSCELTFERLALMV 300 (361)
T ss_dssp EECSSHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 355788899998775
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=2e-23 Score=224.29 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=129.0
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----HHHh--hccEEEEccCCc-Cc-cc
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-QM 525 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~----~~~L--R~~I~~V~Qd~~-LF-~g 525 (680)
+.+||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578999999999999999999999999999999999999999999986542 2333 567999999987 55 67
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCC--eEEEeCCCC
Q 005740 526 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATS 601 (680)
Q Consensus 526 TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~--ILILDEaTS 601 (680)
|++||+.++...+. +. ..++.+ |....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~-d~---~lldt~-----------Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGY-DV---VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTC-SE---EEEECC-----------CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCC-HH---HHHHhc-----------CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 89999987621111 10 011111 11111001 1588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCeEEEEEec---------CcchHh-hcCEEEEEeCCEEE
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIK-AVDRIVVIDDGRII 653 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH---------Rlsti~-~aD~I~vl~~G~Iv 653 (680)
++|+.++. +.+.+. .+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 289 glD~~~~~---~~~~~~-----~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 289 GLNMLPQA---REFNEV-----VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGGHHHH---HHHHHH-----TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCHHHHH---HHHHHh-----cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 99998764 223221 3689999999 445553 47899999999753
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=1.9e-23 Score=224.12 Aligned_cols=196 Identities=17% Similarity=0.140 Sum_probs=153.2
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC-------CC
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------LD 505 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-------~~ 505 (680)
.-++.+||++.|+. +..+|+++ |+|.+||++||+||||||||||+++|+|+++|+.|.|.++|.+.++ ..
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35789999999973 24699999 9999999999999999999999999999999999999999975322 22
Q ss_pred HHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccccc--CC-CCCChHHHHHHH
Q 005740 506 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DD-DLLSGGQKQRIA 582 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v--ge-~~LSGGQrQRIa 582 (680)
...+++.+.+++|.. +...+++..+.....+.++... .|.+..+ .. .+||+|| ||++
T Consensus 121 ~~~~~~~v~~~~~~~-----------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 121 QSTLSKCVLVVTTSD-----------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHHTTEEEEEECTT-----------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhhceEEEEECCC-----------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 334556677776632 1123455555555566666543 3544332 22 3899999 9999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCe-----EEEEEecCcchHhhcCEEEEEeCCEEEEecC
Q 005740 583 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 583 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~-----TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gt 657 (680)
+| +.+|++ |++||+.....+.+.++++.+. .+|. |+++++|+++ -.-||++++|.+|+|+..|+
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRE 249 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHH
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCC
Confidence 99 689998 9999999999999999887531 1377 9999999999 66799999999999999998
Q ss_pred hHHHh
Q 005740 658 HAELL 662 (680)
Q Consensus 658 h~eLl 662 (680)
.+++.
T Consensus 250 l~~~~ 254 (347)
T 2obl_A 250 LAEEN 254 (347)
T ss_dssp HHTTT
T ss_pred HHHcC
Confidence 87763
No 88
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=1.6e-24 Score=215.88 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=113.0
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc-ccHH
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIK 528 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~-gTI~ 528 (680)
.+|++| .+|++||++||+||||||||||+++|+|+++ +|.+++.....-.....|+.++|++|++.+|. -|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 479999 7999999999999999999999999999996 35555422211111234678999999998874 3556
Q ss_pred HHHhc-----C--CCCCCCHHHHHHHH----------HHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 529 SNIMY-----G--CPKDVKNEDIEWAA----------KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 529 eNI~~-----g--~~~~~s~eei~~A~----------~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
+|+.. + .....+.+++.+.+ +..++.++....|.. || ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA---------VT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS---------EE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc---------EE-----------EEEECC
Confidence 66531 1 00012233444333 334554444444432 34 899999
Q ss_pred CeEEEeCCCCCC----CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC
Q 005740 592 AILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 649 (680)
Q Consensus 592 ~ILILDEaTSaL----D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~ 649 (680)
++++|||||+++ |+.+.+.+.+.++++.++ .+.|+|+|+|.++.+.. ||+|++|.+
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQ--GDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG--GGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--ccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 999999999998 677889999999888642 36899999999998765 999999853
No 89
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=2.7e-23 Score=204.33 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=126.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 542 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~e 542 (680)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.+++ .+++++|+++|+. +++ ++|+.-- ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~---~~~~- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV---GLEP- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC---CCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc---cccC-
Confidence 78999999999999999999999999 999 999999997654 5799999999986 443 3333211 0000
Q ss_pred HHHHHHHHhcHHHHHHcCCCCcccccCCC--CCChHHHHHH-HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHH
Q 005740 543 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV 614 (680)
Q Consensus 543 ei~~A~~~a~l~dfI~~LP~G~dT~vge~--~LSGGQrQRI-aIAR---All~~p~ILILDE--aTSaLD~~tE~~I~~~ 614 (680)
-+...+..+|+. .+|||||+++ +++| |++++|++||||| ||..+|.+.-+.+.+.
T Consensus 69 -----------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 69 -----------------PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp -----------------CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred -----------------CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 011233467763 8999999999 6666 7899999999999 8888999877777666
Q ss_pred HHHHhccCCCCeEEEE--E--ecCcchHhhcCEEEEEeCCEEEEecChHHHhhcCcHHHHHHH
Q 005740 615 LHALRNDCKTKRTVIV--I--AHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 673 (680)
Q Consensus 615 l~~l~~~~~~~~TvIv--I--aHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~~g~Y~~L~~ 673 (680)
+++ .+|+|+ | +||.+ ...+|+|..+++|+|++-... +++..|.++.+
T Consensus 132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 642 245553 3 49987 567899999999999985431 14455666554
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=5.1e-21 Score=226.73 Aligned_cols=162 Identities=26% Similarity=0.347 Sum_probs=120.3
Q ss_pred HHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCC------HHHHHHHHHHhc
Q 005740 479 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK------NEDIEWAAKQAY 552 (680)
Q Consensus 479 L~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s------~eei~~A~~~a~ 552 (680)
+-.+.-+.+.|..|+|+++|++|.++... |+.||+.+......+ -+++.+..+ .
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~------------------~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTEL------------------SISEELEFLKNLNLTEREREIVGELLKEIE--K 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHS------------------BHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred chhcccccCChHhcCcEECCccHHHhhhC------------------CHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence 34445567899999999999998654333 444444432110111 111211111 1
Q ss_pred HHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeE
Q 005740 553 VHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 627 (680)
Q Consensus 553 l~dfI~~LP~G~dT~-vge--~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~T 627 (680)
..+++..+ |++.. .+. .+||||||||++|||||..+|+ +|||||||++||+...+.+.+.|+++.+ .|+|
T Consensus 444 ~~~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~T 518 (916)
T 3pih_A 444 RLEFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNT 518 (916)
T ss_dssp HHHHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCE
T ss_pred HHHHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCE
Confidence 23455554 44332 222 3899999999999999999887 9999999999999999999999999863 4899
Q ss_pred EEEEecCcchHhhcCEEEEE------eCCEEEEecChHHHhhcC
Q 005740 628 VIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 665 (680)
Q Consensus 628 vIvIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~~~ 665 (680)
+|+|+|++..++.||+|++| ++|+|+++|+++|+++..
T Consensus 519 vivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 519 VIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999999999999999 999999999999998753
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=1.3e-21 Score=205.24 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=126.9
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc-eEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
++|+++++.+++|+.++|+||||||||||++.|++...|++| .|.+.+.+ .+.+.+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999988 77654433 4566777776666555432 3345
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHH-HHHHHHHHHHccCCCeEEEeCCCC---C---
Q 005740 530 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATS---A--- 602 (680)
Q Consensus 530 NI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQ-rQRIaIARAll~~p~ILILDEaTS---a--- 602 (680)
|+..+ ..++++..++++. .+...+-+++.. ...+|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 97 ~l~~~---~~~~~~~~~~~~~-----~l~~~~l~i~~~--~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFDE-----LFGNDTFHLYDS--FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH---HHHHTHHHHHHHH-----HHSSSCEEEECC--CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC---CCCHHHHHHHHHH-----HhccCCEEEECC--CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 66544 1234444433322 222222222111 03589999 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHhccCCCCeEEEEEecCc--c--------------------hH-hhcCEEEEEeCCEE
Q 005740 603 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TI-KAVDRIVVIDDGRI 652 (680)
Q Consensus 603 LD~-~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl--s--------------------ti-~~aD~I~vl~~G~I 652 (680)
+|. .....+.+.|+++.++ .|+|+|+++|.. . .+ ..||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 4556778888777542 378999999995 3 44 46999999999985
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.83 E-value=7.2e-23 Score=231.98 Aligned_cols=168 Identities=12% Similarity=0.106 Sum_probs=122.4
Q ss_pred CCcccceeE-EeeCCcEEEEeCCCCCcHHHHHHH--HhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcccc
Q 005740 450 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 526 (680)
Q Consensus 450 ~~VL~~isl-~I~~Ge~vAIVG~SGsGKSTL~~L--L~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gT 526 (680)
.++|+|||| .|++|+.++|+||||||||||++. +.|+++|.+|.|+++|.+. ..+....++.+|+++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 579999999 999999999999999999999999 7899999999999999873 233445677899999997631
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC----
Q 005740 527 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA---- 602 (680)
Q Consensus 527 I~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSa---- 602 (680)
+|+.+-...+ +++.+++++..++.++..+.|. .|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~---------~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASP--DPEGQEVVGGFDLSALIERINY---------AIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCC--CSSCCSCCSSHHHHHHHHHHHH---------HHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCc--ccchhhhhcccCHHHHHHHHHH---------HHHHc-------------CCCEEEECCHHHHHHhc
Confidence 2222211111 0011112222233332222211 34555 4778999999984
Q ss_pred -CCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH---------hh-cCEEEEEeCC
Q 005740 603 -LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDDG 650 (680)
Q Consensus 603 -LD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti---------~~-aD~I~vl~~G 650 (680)
||+...+.+.+.++++++ .|+|+|+|+|+++.+ .. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 588999999999998864 379999999999874 45 9999999983
No 93
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.82 E-value=7e-23 Score=221.70 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=112.1
Q ss_pred cccceeEEeeC--CcEEEEeCCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCeeCCCCCHHHhhccEEEEccCCc
Q 005740 452 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYI----DGFPLTDLDIRWLREKIGFVGQEPQ 521 (680)
Q Consensus 452 VL~~isl~I~~--Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~----G~I~i----dG~di~~~~~~~LR~~I~~V~Qd~~ 521 (680)
+.+.|+++|++ |+++||||+||||||||+++|+|+|+|++ |+|++ +|.++ .++.+++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99997 46666 5666677 56999999999
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCC--ccccc-CC---------CCCChHHHHHHHHHHHH--
Q 005740 522 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLV-DD---------DLLSGGQKQRIAIARAI-- 587 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G--~dT~v-ge---------~~LSGGQrQRIaIARAl-- 587 (680)
+|++|++|||.++. .+..+..+.......+..+++.+++.+ ++..+ +| .++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 99999999999984 455556666666555666666666543 44432 32 25788888888888888
Q ss_pred -cc--CCCeEEEeCCC
Q 005740 588 -LR--DPAILLLDEAT 600 (680)
Q Consensus 588 -l~--~p~ILILDEaT 600 (680)
++ +++|+++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 76 78888888886
No 94
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=2.7e-20 Score=210.46 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=70.3
Q ss_pred CC-ChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEe
Q 005740 572 LL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 648 (680)
Q Consensus 572 ~L-SGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~ 648 (680)
.| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+ ++|+|+|||++..+..||++++|+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEEe
Confidence 56 999999999999999999 99999999999999999999999999853 589999999999999999999996
Q ss_pred CC
Q 005740 649 DG 650 (680)
Q Consensus 649 ~G 650 (680)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 95
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.81 E-value=2.5e-23 Score=207.04 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=112.5
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc---cHHHHHhcC--
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---DIKSNIMYG-- 534 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g---TI~eNI~~g-- 534 (680)
.++|+++||+||||||||||+++|.|++.| ++++|+||+++++. |+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999975 69999999999854 577776553
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChH----HHHHHHHHHHHccCCCeEEEeCCCCC-------C
Q 005740 535 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG----QKQRIAIARAILRDPAILLLDEATSA-------L 603 (680)
Q Consensus 535 ~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGG----QrQRIaIARAll~~p~ILILDEaTSa-------L 603 (680)
.+...+.+.+.++++..++.+++.. | +++ +|+| |+||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~-------~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYD-------FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEE-------TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-ccc-------CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 2222345677788777766555443 3 444 5555 46899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecCc
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 635 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl 635 (680)
|+.++..+.+.+.+..+. +|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~--~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLE--RGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 999999999988775321 478999999984
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=4.2e-22 Score=203.54 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=107.8
Q ss_pred CCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 449 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 449 ~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
+.++|+|+||++++|+++||+||||||||||+++|.+++ |.+.+| ..++.+++++||.+...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999977 666554 468899999999754456999
Q ss_pred HHHhcCCC-CCC------CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 529 SNIMYGCP-KDV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 529 eNI~~g~~-~~~------s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
+|+++... ... +.+++.+.+ ..+.++.+..+ ..||+||+||+++ |+++.+|+++|||||..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~l~~~~~~~~--~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTL---------KNIVEGKTVEV--PTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHH---------HHHHTTCCEEE--CCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHH---------HHHHCCCCeec--ccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 99876421 011 112222222 22223333332 3699999999998 78999999999999887
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-hh-cCEEEEEeCCEEEEecChHHHhh
Q 005740 602 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-~~-aD~I~vl~~G~Ive~Gth~eLl~ 663 (680)
..|.. +.++ .+.|++++||...-+ +. ++.+ ++|+ +.+++++
T Consensus 145 ~~~~~--------l~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 145 FYSQE--------IRDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTSHH--------HHTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccHH--------HHHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 77753 2222 268999999974333 33 3334 6675 6777764
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=1.5e-20 Score=226.18 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=124.6
Q ss_pred ccEEEEE-----EEEEcCCCCCCCcccceeEEeeC-------CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 433 GHVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 433 g~I~f~n-----VsF~Y~~~~~~~VL~~isl~I~~-------Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
+.|+++| |++.|++ +..|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999953 24799999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHhhccEE-EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHH
Q 005740 501 LTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 579 (680)
Q Consensus 501 i~~~~~~~LR~~I~-~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQ 579 (680)
+.++| ||||++. .-|+.|||..- .++.|.+. .| ...+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r----------------ig~~d~~~---~~------~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR----------------LGASDRIM---SG------ESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE----------------CC------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH----------------cCCHHHHh---hc------hhhhHHHHHH
Confidence 34676 9999973 56777777321 11222221 12 2356777775
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeCCEEE--Ee
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSES-EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EV 655 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~t-E~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~G~Iv--e~ 655 (680)
+++||+++.+|+++||||||+++|+.. ...+.+.++.+.+. .|+|+|++||.++.+.. ||++.|+ +|++. +.
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~--~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET--IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT--SCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 999999999999999999999999987 45567777777532 37899999999998875 8999887 58887 56
Q ss_pred cChHH
Q 005740 656 GNHAE 660 (680)
Q Consensus 656 Gth~e 660 (680)
|+.++
T Consensus 935 ~~~~~ 939 (1022)
T 2o8b_B 935 NECED 939 (1022)
T ss_dssp -----
T ss_pred cCccc
Confidence 65433
No 98
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=3.5e-19 Score=190.73 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=69.8
Q ss_pred CCChHHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEE
Q 005740 572 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 645 (680)
Q Consensus 572 ~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~ 645 (680)
.||||||| |+++|||++.+|++|||||||++||+.+.+.+.+.|+++.+ +++|+|+|||+......||+|+
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEEE
Confidence 69999999 77889999999999999999999999999999999988753 3679999999988888899999
Q ss_pred EEe--CCEE
Q 005740 646 VID--DGRI 652 (680)
Q Consensus 646 vl~--~G~I 652 (680)
+|+ +|..
T Consensus 325 ~l~~~~g~s 333 (339)
T 3qkt_A 325 RISLENGSS 333 (339)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCcc
Confidence 986 4543
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=1e-19 Score=214.21 Aligned_cols=152 Identities=20% Similarity=0.385 Sum_probs=116.0
Q ss_pred CCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHH-------HHHHHHHhcHHHHHHc
Q 005740 487 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED-------IEWAAKQAYVHEFILS 559 (680)
Q Consensus 487 y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~ee-------i~~A~~~a~l~dfI~~ 559 (680)
|.|....+.++|++|.++ ...||.|++.|..+-..++++ +.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q~------------------~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEV------------------TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHHH------------------HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHHH------------------hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 468889999999876542 356788888775222233321 11222222 23333
Q ss_pred CCCCcccc-cCC--CCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecC
Q 005740 560 LPCGYETL-VDD--DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 634 (680)
Q Consensus 560 LP~G~dT~-vge--~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHR 634 (680)
+ |++.. .+. .+|||||||||+||+||..+| ++|||||||++||+..-+.+.+.|+++++ .|.|+|+|+||
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHd 565 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHD 565 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCC
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecC
Confidence 3 33322 222 389999999999999999985 99999999999999999999999999964 48999999999
Q ss_pred cchHhhcCEEEEE------eCCEEEEecChHHHhhc
Q 005740 635 LSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 664 (680)
Q Consensus 635 lsti~~aD~I~vl------~~G~Ive~Gth~eLl~~ 664 (680)
+..++.||+|++| ++|+|+.+|+++++++.
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999999 79999999999999874
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.2e-20 Score=213.66 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=123.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
++.+++++.|++- ..+| +..+++|+.++|+|+||||||||++.+++...|+ |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 3456666655320 0233 3489999999999999999999999999998875 54 1256
Q ss_pred EEccCCcCccccHHHHHh-cCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCC
Q 005740 515 FVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~-~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p 591 (680)
+++||+. .++++|.. +| .+-++ +.. .|+...... ..|||||+||+++||++..+|
T Consensus 315 ~~~ee~~---~~l~~~~~~~g----~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p 372 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG----MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKP 372 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS----CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCH---HHHHHHHHHcC----CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCC
Confidence 6777763 35666653 33 22221 111 122222222 379999999999999999999
Q ss_pred CeEEEeCCCCCCCHH-----HHHHHHHHHHHHhccCCCCeEEEEEecCc----------chHh-hcCEEEEEeCCE
Q 005740 592 AILLLDEATSALDSE-----SEHYVKGVLHALRNDCKTKRTVIVIAHRL----------STIK-AVDRIVVIDDGR 651 (680)
Q Consensus 592 ~ILILDEaTSaLD~~-----tE~~I~~~l~~l~~~~~~~~TvIvIaHRl----------sti~-~aD~I~vl~~G~ 651 (680)
++||+| ||++||.. ..+.+.+.++.+++ .|.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 373 ~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 373 ARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999 99999999 88888888887764 479999999998 5555 499999999987
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.78 E-value=7.3e-21 Score=204.57 Aligned_cols=176 Identities=23% Similarity=0.217 Sum_probs=127.0
Q ss_pred EEEEEEcCCCCCCCcccce-eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCeeCCCCCHHHh
Q 005740 438 VNISFHYPSRPTVPILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRWL 509 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~i-sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y--~p~~----G~-I~idG~di~~~~~~~L 509 (680)
+.+++.+ +.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |++|+.+.- .
T Consensus 111 ~~isTG~------~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~ 178 (349)
T 1pzn_A 111 GRISTGS------KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------R 178 (349)
T ss_dssp CEECCSC------HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------C
T ss_pred CeecCCC------HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------C
Confidence 4455544 356665 6899999999999999999999999999999 6776 68 999997651 2
Q ss_pred hccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc-
Q 005740 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL- 588 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll- 588 (680)
++++++++|+..++..++.|||.+... .+ |++|+|++.+||+++
T Consensus 179 ~~~i~~i~q~~~~~~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~ 223 (349)
T 1pzn_A 179 PERIREIAQNRGLDPDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIK 223 (349)
T ss_dssp HHHHHHHHHTTTCCHHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHH
Confidence 567889999999998899999988731 11 356777777777777
Q ss_pred ------cCCCeEEEeCCCCCCCHHH-------H-----HHHHHHHHHHhccCCCCeEEEEEecCcchHhh-cCEEEEEeC
Q 005740 589 ------RDPAILLLDEATSALDSES-------E-----HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 649 (680)
Q Consensus 589 ------~~p~ILILDEaTSaLD~~t-------E-----~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~-aD~I~vl~~ 649 (680)
.+|++||+||||+.+|++. + +.+.+.|.++.+. .++|+|+++|..+.... ++.+.+...
T Consensus 224 ~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~--~~~tvii~~h~~~~~~~~~~~~~~~~~ 301 (349)
T 1pzn_A 224 ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQARPDAFFGDPTRPIG 301 (349)
T ss_dssp HSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECC---------------
T ss_pred HhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEcccccccccccCCccccCC
Confidence 6899999999999999963 1 3344444554332 37899999998875542 345778889
Q ss_pred CEEEEecChHHHh
Q 005740 650 GRIIEVGNHAELL 662 (680)
Q Consensus 650 G~Ive~Gth~eLl 662 (680)
|++++.+.|..|.
T Consensus 302 G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 302 GHILAHSATLRVY 314 (349)
T ss_dssp CCCCCTTCSEEEE
T ss_pred cceEeecCcEEEE
Confidence 9999988877764
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.77 E-value=5.3e-20 Score=184.51 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=105.3
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-------CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-------~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI 531 (680)
-|++|+.++|+||||||||||++.|++.+.| ..|.|++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 555889988652 12 2357778888888878999999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc-------cCCCeEEEeCCCCCCC
Q 005740 532 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-------RDPAILLLDEATSALD 604 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll-------~~p~ILILDEaTSaLD 604 (680)
.+.. ..+..+ |++++..+++++ .+|++++|||||+.+|
T Consensus 95 ~~~~--~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVAR--AFNSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEE--CCSHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEe--cCChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 8873 222211 222233333333 4999999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHhccCCCCeEEEEEec----CcchHhh-cCEEEEEeCCE
Q 005740 605 SE-------SE-----HYVKGVLHALRNDCKTKRTVIVIAH----RLSTIKA-VDRIVVIDDGR 651 (680)
Q Consensus 605 ~~-------tE-----~~I~~~l~~l~~~~~~~~TvIvIaH----Rlsti~~-aD~I~vl~~G~ 651 (680)
++ .+ ..+.+.|.++.++ .|+|+|+|+| ....+.+ ||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 22 2556666665432 3789999999 4444665 99999999763
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=3.4e-19 Score=196.92 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=68.1
Q ss_pred CCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.||||||||++|||+|. ++||+||||||||+||+.+...+.+.|.++.+ ++.++|+|||+...+..||+++++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence 39999999999999999 78999999999999999999999999988742 367999999999999999999999
Q ss_pred e
Q 005740 648 D 648 (680)
Q Consensus 648 ~ 648 (680)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=1.6e-18 Score=204.99 Aligned_cols=135 Identities=30% Similarity=0.430 Sum_probs=104.1
Q ss_pred CccccHHHHHhcCCCCCCCHHH--H-----HHHHHHhcHHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHHHHccC-
Q 005740 522 LLQMDIKSNIMYGCPKDVKNED--I-----EWAAKQAYVHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIARAILRD- 590 (680)
Q Consensus 522 LF~gTI~eNI~~g~~~~~s~ee--i-----~~A~~~a~l~dfI~~LP~G~dT~-vge--~~LSGGQrQRIaIARAll~~- 590 (680)
+++.||.|++.|..+-..+.++ + .+..+. + +++..+ |++.. ... .+|||||||||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 4667888998885322234421 1 111111 1 233332 44322 222 38999999999999999999
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE------eCCEEEEecChHHHhh
Q 005740 591 -PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 663 (680)
Q Consensus 591 -p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl------~~G~Ive~Gth~eLl~ 663 (680)
|++|||||||++||+..-+.+.+.|+++++ .|+|+|+|+||+..++.||+|++| ++|+|+..|+++++++
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRD---LGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHH---cCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 589999999999999999999999999864 489999999999999999999999 6999999999999997
Q ss_pred c
Q 005740 664 K 664 (680)
Q Consensus 664 ~ 664 (680)
.
T Consensus 618 ~ 618 (993)
T 2ygr_A 618 N 618 (993)
T ss_dssp C
T ss_pred h
Confidence 5
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=3.1e-19 Score=208.85 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=114.6
Q ss_pred cccEEEEEEEEEcCCC--CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-CCCceEEECCeeCCCCCHHH
Q 005740 432 MGHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~--~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~idG~di~~~~~~~ 508 (680)
.+.|++++. ++|-- .+..|++|+||+ |+.++|+|||||||||+++++.|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 567999988 55531 135799999999 99999999999999999999999974 7888752 1 1
Q ss_pred hhccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 509 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
.+..+++|+| +|. -++.||+..| +|+|++|++.+||++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g--------------------------------------~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG--------------------------------------KSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C--------------------------------------CSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc--------------------------------------ccHHHHHHHHHHHHH
Confidence 2567888887 554 3666665432 488999999999999
Q ss_pred --ccCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHhccCCCCeEEEEEecCcchHhhc
Q 005740 588 --LRDPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 641 (680)
Q Consensus 588 --l~~p~ILILDEa---TSaLD~~tE-~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~a 641 (680)
+.+|+++||||| ||+||..+. ..+.+.|.+. |+|+|++||..+....|
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~------g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER------RAYTLFATHYFELTALG 704 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH------TCEEEEECCCHHHHTCC
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 5677777652 68999999998876655
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.9e-20 Score=185.20 Aligned_cols=166 Identities=20% Similarity=0.201 Sum_probs=103.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC-----CCCCceEEE-------CCeeCC
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYI-------DGFPLT 502 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y-----~p~~G~I~i-------dG~di~ 502 (680)
|+++||+|+|+ .++|++ |++++|++++|+|++|||||||++.|.|.. .|+.|.+.. ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258988 899999999999999999999999999998 899998765 333332
Q ss_pred C---CC--------HHHhhccEEEEccCCcCccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccc-cC
Q 005740 503 D---LD--------IRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VD 569 (680)
Q Consensus 503 ~---~~--------~~~LR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~-vg 569 (680)
+ +. .+.+++.++++.|+...+++ ++..|+..+ . ...++++.+.++. .+.... ++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~-~~~~~~~~~~~~~-----------~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-L-KDLDQQMIEWAVD-----------SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-C-CHHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-C-chhHHHHHHHHHH-----------cCCCeEEEE
Confidence 1 11 13455555566654433332 233333322 1 1112233333221 122222 24
Q ss_pred C--CCCChHHHHH-HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 005740 570 D--DLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 619 (680)
Q Consensus 570 e--~~LSGGQrQR-IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~ 619 (680)
. ..+|+||||| +..||+++++|+++++||||||+|.++-..+.+.|.+..
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 3 2789999999 899999999999999999999999999999999998875
No 107
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.76 E-value=3.1e-21 Score=202.11 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=96.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCC--
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-- 538 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~-- 538 (680)
+++.++||+|+||||||||+++|.+++.+. | . . ++.+.+|+||.++|++++++|+.++.+ +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~-~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFK-NNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTT-TCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhcccc-ccc
Confidence 357899999999999999999999999874 2 0 1 566777799999999999999988631 1
Q ss_pred -CCHHHHHHHHHHhcHHHHHHcCCCCcccccC------C--CCCChHHHHHHHHH--HHHccCCCeEEEeCCCCCCCHHH
Q 005740 539 -VKNEDIEWAAKQAYVHEFILSLPCGYETLVD------D--DLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSES 607 (680)
Q Consensus 539 -~s~eei~~A~~~a~l~dfI~~LP~G~dT~vg------e--~~LSGGQrQRIaIA--RAll~~p~ILILDEaTSaLD~~t 607 (680)
.+....-++.+.+.+.+++.++++|++|..+ . .++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 92 l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 92 LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1111112234456678999999999988643 2 48999999999998 666 999999999999999865
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.76 E-value=1e-20 Score=217.44 Aligned_cols=193 Identities=16% Similarity=0.256 Sum_probs=126.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccce----------eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCC
Q 005740 434 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 502 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~i----------sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~ 502 (680)
.++++||++.|++. ..++|+.+ ++++|. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58999999999642 23466655 377775 999999999999999999999989 7999999999963
Q ss_pred C---CCHHHhhccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHH
Q 005740 503 D---LDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 578 (680)
Q Consensus 503 ~---~~~~~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQr 578 (680)
. -....+|+.|+||+|++.+++ .||+|||.++. + .+.....| +| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~------~~~~~~~~---------~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------N------AIAGEGMG---------IS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------H------HHHCSSSC---------CC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------H------HhcCCccc---------cc---h
Confidence 2 224578999999999998874 58998886541 0 01111111 11 2
Q ss_pred HHHHHHHHHccCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch--------Hhh----
Q 005740 579 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IKA---- 640 (680)
Q Consensus 579 QRIaIARAll~~p~ILILDEa------TSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst--------i~~---- 640 (680)
+++.++++...+|+++++||| |++||+.+++.+.+.++++.++ ..+-++++++|.+.. ++.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 344555555678999999999 9999999999999999986433 345688899999763 222
Q ss_pred -cCEEEEEeCCEEEEecChHHHh
Q 005740 641 -VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 641 -aD~I~vl~~G~Ive~Gth~eLl 662 (680)
...|+|+.++.+++.|+.++++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3679999999999999876554
No 109
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=2.3e-20 Score=189.57 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=114.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh--cCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~--r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.++++++++.|++- + .+|.+ .|++|+.++|+||||||||||++.|+ ++.++.+|.+++++.+..+ .....++
T Consensus 6 ~~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 36677787777642 1 24444 79999999999999999999999999 7767888889888754321 2233446
Q ss_pred cEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC
Q 005740 512 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 590 (680)
Q Consensus 512 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~ 590 (680)
.+++++|+...+. -++.++..... ....++.... ....+-++.++...+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVV--GLPSEEKFVL----------------------EDRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEcccccc--ccccccceec----------------------cCcccHHHHHHHHHHHHHhhC
Confidence 6888888754331 23333322110 0000000000 011233444444444444579
Q ss_pred CCeEEEeCCCCCCC-----HHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH----------hhc-CEEEEEe
Q 005740 591 PAILLLDEATSALD-----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAV-DRIVVID 648 (680)
Q Consensus 591 p~ILILDEaTSaLD-----~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti----------~~a-D~I~vl~ 648 (680)
|++++|||||+.+| ....+.+.+.++.+++ .|+|+|+++|.++.+ ..| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~---~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE---MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH---HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH---CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999997 5666668888877754 379999999999886 457 9999995
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=4.1e-18 Score=202.74 Aligned_cols=169 Identities=12% Similarity=0.147 Sum_probs=123.5
Q ss_pred ccEEEEEEEEEcCCC--CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHH--------hcCCCCCCceEEECCeeCC
Q 005740 433 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~--~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL--------~r~y~p~~G~I~idG~di~ 502 (680)
+.|++++...-+-.. .++.|++|+||++++|+.++|+|||||||||+++.+ .|.|-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468888875544221 134699999999999999999999999999999999 67666665432
Q ss_pred CCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 503 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 503 ~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
++++. .+|. ++| +.|.+ ...+|+|++|+..
T Consensus 702 ----------~~~~d---~i~~-------~ig------------------~~d~l------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG------------------AGDSQ------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC------------------chhhH------------HHhHhhhHHHHHH
Confidence 11110 0110 111 10111 1257888888888
Q ss_pred HHHHH--ccCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChH
Q 005740 583 IARAI--LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 659 (680)
Q Consensus 583 IARAl--l~~p~ILILDEaTSaLD~~tE~~I-~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~ 659 (680)
+|+++ +.+|+++||||||+++|+.....+ ...++.+.+. .|+|+|++||.......||++..+++|++...|+.+
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~--~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK--IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT--TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 88888 999999999999999999988777 4445555431 378999999999999999999999999999888776
Q ss_pred HH
Q 005740 660 EL 661 (680)
Q Consensus 660 eL 661 (680)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 111
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=4.1e-18 Score=160.64 Aligned_cols=87 Identities=24% Similarity=0.402 Sum_probs=75.5
Q ss_pred CcccccC----C---CCCChHHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEE
Q 005740 563 GYETLVD----D---DLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 629 (680)
Q Consensus 563 G~dT~vg----e---~~LSGGQrQRIaIA------RAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvI 629 (680)
+|++.+- + .+||||||||++|| ||++.+|++|||||||++||+++.+.+.+.+.++.+ +|+|+|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii 117 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVI 117 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEEE
Confidence 7777761 2 38999999999876 999999999999999999999999999999998753 368999
Q ss_pred EEecCcchHhhcCEEEEE--eCCEE
Q 005740 630 VIAHRLSTIKAVDRIVVI--DDGRI 652 (680)
Q Consensus 630 vIaHRlsti~~aD~I~vl--~~G~I 652 (680)
+|||+......||+|++| ++|..
T Consensus 118 ivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 118 LVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp EEESCGGGGGGCSEEEEEEEETTEE
T ss_pred EEEChHHHHHhCCEEEEEEcCCCeE
Confidence 999999777789999999 56644
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=2.3e-19 Score=189.09 Aligned_cols=165 Identities=18% Similarity=0.132 Sum_probs=110.9
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----HHHh--hccEEEEccCCcCcc-ccHHHHHhcC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQLLQ-MDIKSNIMYG 534 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~----~~~L--R~~I~~V~Qd~~LF~-gTI~eNI~~g 534 (680)
+|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|++|+|++.++. .|++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2233 467999999988774 4788888654
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHH
Q 005740 535 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVK 612 (680)
Q Consensus 535 ~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~ 612 (680)
.. .+.+..+...+...+.. +..++..++||.+||||+..+|+ +|+|| |+++.| +.
T Consensus 181 ~~--------------~~~d~~llDt~G~~~~~--~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 181 KA--------------RGYDLLFVDTAGRLHTK--HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp HH--------------HTCSEEEECCCCCCTTC--HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred Hh--------------CCCCEEEecCCCCCCch--HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 10 01100111111111110 01356777999999999999999 55666 444443 33
Q ss_pred HHHHHHhccCCCCeEEEEEecCcchHhhc----------CEEEEEeCCE
Q 005740 613 GVLHALRNDCKTKRTVIVIAHRLSTIKAV----------DRIVVIDDGR 651 (680)
Q Consensus 613 ~~l~~l~~~~~~~~TvIvIaHRlsti~~a----------D~I~vl~~G~ 651 (680)
+.++++.+. .+.|+|+|||...+.+.. -.|..+-.|+
T Consensus 238 ~~~~~~~~~--~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEA--VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHH--HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHH--cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 333333221 268999999976543221 3566666665
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.6e-19 Score=197.82 Aligned_cols=166 Identities=20% Similarity=0.172 Sum_probs=103.3
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhcc
Q 005740 433 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 512 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~ 512 (680)
+.|+++||+++|++ ..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 56999999999964 46999999998 99999999999999999999987666 244443321 1122467
Q ss_pred EEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC
Q 005740 513 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 513 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p 591 (680)
+++++|++.++ ..||.||+.++.. .+.++.+.. +.+++.+ .++++.+||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCC
Confidence 99999998877 7799999998842 222222222 2234432 24567788999999999999
Q ss_pred C---eEEEeCCC-CCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH
Q 005740 592 A---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 592 ~---ILILDEaT-SaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
+ +|++|||| ++||+... .+ ++.+. .+.++|+|.|+..++
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~---lk~L~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EF---MKRLH----EKVNIIPLIAKADTL 180 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HH---HHHHT----TTSEEEEEEESTTSS
T ss_pred CeeEEEEEecCcccCCCHHHH-HH---HHHHh----ccCcEEEEEEcccCc
Confidence 9 99999999 59998764 23 34442 357889998887654
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.72 E-value=1e-18 Score=187.93 Aligned_cols=147 Identities=22% Similarity=0.262 Sum_probs=110.6
Q ss_pred EEEEEEcCCCCCCCcccceeE-------EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECCeeCCCCCHHHh
Q 005740 438 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 509 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl-------~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~~~~~~~L 509 (680)
.+++|+|... ..+.|+++.+ ..++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 6788888643 4567888887 78899999999999999999999999999998 57775544333 332 3
Q ss_pred hccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 510 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 510 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
+...++++|...-. ...+-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~~~-------------~~~~~~~--------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHR-------------DTLGFSE--------------------------------------ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTT-------------TBSCHHH--------------------------------------HHHHHTTS
T ss_pred hccccceeeeeecc-------------ccCCHHH--------------------------------------HHHHHhhh
Confidence 34456677754211 0111111 99999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCC
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 650 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G 650 (680)
+|++|+||||| |.++.+.+.++. ..|+|+++++|..+.+..|||+++|..|
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~~-------~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTAA-------ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHHH-------HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CcCEEecCCCC---CHHHHHHHHHHH-------hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99999999999 788765554442 1378999999999999999999988544
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=5.3e-19 Score=186.25 Aligned_cols=164 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC-CCCCCceEEECCeeCCCCCHHHhhccEEEE
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~-y~p~~G~I~idG~di~~~~~~~LR~~I~~V 516 (680)
+||+++|.+ +.+++|++|+| +|||+||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 578899963 46999999998 99999999999999999998 889999 9999988754 21 2 4678999
Q ss_pred ccCCcCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 517 GQEPQLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 517 ~Qd~~LF-~gTI~eNI~~g~~~~~s~-eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
+|+..++ .-||.||..+|.. ... ++.....+. +.+... ..+ +.+|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~--~~~~e~~~~l~~~--l~~~~~-------~~~--~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA--INCRDCFKTIISY--IDEQFE-------RYL--HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-------------CTTHHHH--HHHHHH-------HHH--HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhh--cCcHHHHHHHHHH--HHHHHH-------HHH--HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 6689999888732 111 111111111 111110 000 258999999999999986 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 595 LLDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 595 ILDEaTSa-LD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
++||||++ ||+... +.++++.+ ..+.++|+..|.+.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCCC
Confidence 99999986 999874 34444432 136788888898754
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=6.4e-18 Score=169.18 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=117.0
Q ss_pred CCcccceeE-EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc---cEEEEccCCcCccc
Q 005740 450 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQM 525 (680)
Q Consensus 450 ~~VL~~isl-~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~---~I~~V~Qd~~LF~g 525 (680)
.+.|+++.. .+++|+.++|+||+|||||||++.+++...+++|+|.+.+.+. +.+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 357999998 8999999999999999999999999999988889988876543 3333333 2333333211
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCC
Q 005740 526 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL 603 (680)
Q Consensus 526 TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaL 603 (680)
.+++.+- . ... ..++........|.+|.++...+.+...+|+ ++|+||||+.+
T Consensus 82 --~~~~~~~-~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 82 --EKKLIII-D-ALM---------------------KEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --TTTEEEE-E-CCC-------------------------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --hCCEEEE-e-ccc---------------------cccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 0111111 0 000 0000000112349999999888888778999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHhccCCCCeEEEEEecCc--------chHh-hcCEEEEEeCCE
Q 005740 604 --DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIK-AVDRIVVIDDGR 651 (680)
Q Consensus 604 --D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl--------sti~-~aD~I~vl~~G~ 651 (680)
|+.....+.+.|.++.++ .|.|+|+++|.. ..+. .||+|++|++.+
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 998888888888887543 479999999998 3354 499999998653
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.68 E-value=9.8e-17 Score=155.13 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEE
Q 005740 572 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 647 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl 647 (680)
.||||||||++||||+. ++|+++||||||++||+.+++.+.+.|+++. ++.++|+||||..++..||+|+.+
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~~~~~ad~i~~v 139 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDVMMANADKIIGV 139 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHHHHHhCCEEEEE
Confidence 69999999999999995 6689999999999999999999999998874 357999999999999999999855
Q ss_pred --eCCEEE
Q 005740 648 --DDGRII 653 (680)
Q Consensus 648 --~~G~Iv 653 (680)
++|...
T Consensus 140 ~~~~g~s~ 147 (173)
T 3kta_B 140 SMRDGVSK 147 (173)
T ss_dssp EEETTEEE
T ss_pred EecCCEEE
Confidence 577643
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.65 E-value=1.1e-17 Score=168.28 Aligned_cols=144 Identities=10% Similarity=0.099 Sum_probs=106.1
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc-cH----HH
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DI----KS 529 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI----~e 529 (680)
.-..++|+.++|+||||||||||+++|+|+++| ..|.|.++|.+.+. ..++.++|++|++.+|.. |+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 345789999999999999999999999999986 78999999987653 246789999999988865 33 46
Q ss_pred HHhcCCCC-CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 530 NIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 530 NI~~g~~~-~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
|+.+.... ..+.++ ++.++.+++++||| ||+++.
T Consensus 86 ~~~~~~~~yg~~~~~----------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYYGTSREA----------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEEEEEHHH----------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccCCCCHHH----------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 66543110 011222 23344457999999 999999
Q ss_pred HHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEecChHHHhhc
Q 005740 609 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 664 (680)
Q Consensus 609 ~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~Gth~eLl~~ 664 (680)
+.+.+.+. +++|+++++|.++.++. |+ +++| .|+.+++.++
T Consensus 121 ~~i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 121 QQIRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 99887663 36899999999998876 43 6777 6788887653
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.64 E-value=1.6e-16 Score=157.94 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=100.4
Q ss_pred CcccceeE-EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 451 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 451 ~VL~~isl-~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
+.|+++.. .+++|+.++|+||+|||||||++.+++ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------
Confidence 46777766 799999999999999999999999999 4444455554422 122222222
Q ss_pred HHh-cCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHHccC-CCeEEEeCCCCCCCH
Q 005740 530 NIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAILRD-PAILLLDEATSALDS 605 (680)
Q Consensus 530 NI~-~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGG--QrQRIaIARAll~~-p~ILILDEaTSaLD~ 605 (680)
... +| .+.+++ ...+ .+. ..|++ |+|+++.+|+++++ |+++|+||||+.+|+
T Consensus 65 ~~~~~~----~~~~~~------------~~~~------~~~--~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETRG----LNPEEA------------LSRF------ILF--TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTTT----CCHHHH------------HHHE------EEE--CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhcC----CChHHH------------hhcE------EEE--ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 111 11 112221 1111 011 23444 47899999999986 999999999999998
Q ss_pred HHH--------HHHHHHHHHHhccCCCCeEEEEEecCcc-------------hH-hhcCEEEEEeCC
Q 005740 606 ESE--------HYVKGVLHALRNDCKTKRTVIVIAHRLS-------------TI-KAVDRIVVIDDG 650 (680)
Q Consensus 606 ~tE--------~~I~~~l~~l~~~~~~~~TvIvIaHRls-------------ti-~~aD~I~vl~~G 650 (680)
..+ ..+.+.|+++.++ .++|+|+++|... .+ ..||+|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 543 3344456665432 3689999999865 33 459999999865
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.62 E-value=1.5e-19 Score=179.95 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=99.5
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 539 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~ 539 (680)
.++|+++||+||||||||||+++|.|+++|+ | ..+++|+||.+.++.+..+|+......+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999987 5 36899999999998888888642101111
Q ss_pred CHHHHHHHHHHhcHHHHHHcCCCC--cccccCCC--CCChHHHHHHHHH-HHHccCCCeEEEeCCC-----------CCC
Q 005740 540 KNEDIEWAAKQAYVHEFILSLPCG--YETLVDDD--LLSGGQKQRIAIA-RAILRDPAILLLDEAT-----------SAL 603 (680)
Q Consensus 540 s~eei~~A~~~a~l~dfI~~LP~G--~dT~vge~--~LSGGQrQRIaIA-RAll~~p~ILILDEaT-----------SaL 603 (680)
..+.+...+.+++..++.| +++++.+. .+||||+||+++| |+++.+++++++|||. ..+
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 1122233445556666665 66666663 7899999999999 9999999999999984 335
Q ss_pred CHHHHHHHHHHHHHH
Q 005740 604 DSESEHYVKGVLHAL 618 (680)
Q Consensus 604 D~~tE~~I~~~l~~l 618 (680)
|...|..+++.+++.
T Consensus 155 d~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 155 EVPMADLEARLVQRW 169 (208)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHH
Confidence 555555555555543
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=6.8e-17 Score=176.51 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=116.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcE--EEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhc
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 511 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~--vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~ 511 (680)
.++.++ +++|++ .+ |+|+||++++|+. +|||||||||||||+++|+|+. ++|.++...+....++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 455666 788864 35 9999999999999 9999999999999999999994 5677766555555677
Q ss_pred cEEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHH----HHHhcHHHHHHcC-------CCCcccc----c---CC--
Q 005740 512 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWA----AKQAYVHEFILSL-------PCGYETL----V---DD-- 570 (680)
Q Consensus 512 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~s~eei~~A----~~~a~l~dfI~~L-------P~G~dT~----v---ge-- 570 (680)
.+++|+|++.++ .-|+.||+.||. ..+.++-+.. ++ ..+.+++... +..-|+. + -+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 679999999994 3443322221 11 1223333332 2233443 1 12
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HhccCCCCeEEEEEec
Q 005740 571 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAH 633 (680)
Q Consensus 571 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~-l~~~~~~~~TvIvIaH 633 (680)
..|+-.+ +.|+|+|-.+++|+++||+|..|.++.-..+.+.+++ +. ..|.+++.|+.
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---~~gi~I~~is~ 217 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---SNGVQIYQFPT 217 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---TTBCCCCCCC-
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---HcCCcEEecCC
Confidence 2566655 8999999999999999999999988766677777776 43 25778888874
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.62 E-value=1.2e-18 Score=184.95 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=110.7
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC--------CCCCceEEECCeeCCCCC---------------HHHhhccEEEE---c
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV---G 517 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y--------~p~~G~I~idG~di~~~~---------------~~~LR~~I~~V---~ 517 (680)
+.++|+|+||||||||++.|+|++ .|+.|+|.+||.++.+.+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 45778889988 7
Q ss_pred cCCc-CccccHHHHHhcCCCCCCCHHHHHHHH-HHhcHHHHHHcCCCCcccccCC-------CCCChHHHHHHHHHHHHc
Q 005740 518 QEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAA-KQAYVHEFILSLPCGYETLVDD-------DLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 518 Qd~~-LF~gTI~eNI~~g~~~~~s~eei~~A~-~~a~l~dfI~~LP~G~dT~vge-------~~LSGGQrQRIaIARAll 588 (680)
|++. .|+.++.||+.++. + +.+.+.. ......+. ..+ ++.-|.++- .++||||+||...+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~-p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD-P----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC-H----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC-H----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEE
Confidence 8876 47999999998873 2 2222221 00000000 011 122233332 168999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcc
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 636 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRls 636 (680)
.+|+++ ||| +.+.+.++++. .+.|+++++|+..
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~ 190 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI 190 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence 999887 888 66777777763 4689999999743
No 123
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=2.2e-16 Score=187.52 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=104.7
Q ss_pred ccEEEEEEEEEc----CCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH
Q 005740 433 GHVQFVNISFHY----PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 508 (680)
Q Consensus 433 g~I~f~nVsF~Y----~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~ 508 (680)
+.|++++..--. -+..++.|++|+||++++|+.++|+|||||||||+++.+.+..-
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-------------------- 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-------------------- 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------
Confidence 457777753221 01123579999999999999999999999999999999864310
Q ss_pred hhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 509 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 509 LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
+.+.-.+||++..-+ ++.++| + ...++.|.+. . |-..+|+|++|+..|+|+ +
T Consensus 699 ~aq~g~~vpa~~~~i--~~~d~i-~---------------~~ig~~d~l~---~------~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 699 MAQIGSYVPAEEATI--GIVDGI-F---------------TRMGAADNIY---K------GRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp HHHHTCCBSSSEEEE--ECCSEE-E---------------EEC-------------------CCHHHHHHHHHHHHHH-C
T ss_pred HhhcCccccchhhhh--hHHHHH-H---------------HhCChHHHHH---H------hHHHhhHHHHHHHHHHHh-c
Confidence 000011223221100 000001 0 0011111111 1 114689999999999999 8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHhccCCCCeEEEEEecCcchHhhcCEE
Q 005740 589 RDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 644 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~-~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I 644 (680)
.+|+++||||||++||+.....+. ..++.+.+ ..|+|+|++||.++....||+.
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~--~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIR--DVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCCEEEEECSCGGGGGHHHHT
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH--hcCCeEEEEeCcHHHHHHHhhc
Confidence 999999999999999999888886 45555543 2478999999999887766653
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=6.3e-16 Score=160.67 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=102.0
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHH-hcCCCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 537 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI-~~g~~~ 537 (680)
.+++|+.++|+||+|||||||++.+++... .|++. .|.+..+ +..+.|++.+..+ ..+.+++ .+| .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g-~- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG-A- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH-T-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH-h-
Confidence 478999999999999999999999998664 57763 4544321 3468888776543 2333333 234 1
Q ss_pred CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCC--CCCHHHH---HH
Q 005740 538 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HY 610 (680)
Q Consensus 538 ~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTS--aLD~~tE---~~ 610 (680)
+..+++..++++...+. ...+. ..||+||+|++ |+++++|+++||||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 34454444444443321 11222 37899998875 78999999999999999 9998554 67
Q ss_pred HHHHHHHHhccCCCCeEEEEEecCcchH
Q 005740 611 VKGVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 611 I~~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
+.+.|.++.++ .|+|+|+|+|.....
T Consensus 159 ~~~~L~~l~~~--~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAAD--TGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHH--HCCEEEEEEEC----
T ss_pred HHHHHHHHHHH--cCCEEEEEecCCCcc
Confidence 77777777432 378999999987654
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.58 E-value=2.6e-17 Score=160.53 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=91.0
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 538 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 538 (680)
.+++|+.++|+|||||||||++++|++. |+.|.|.+||.++.+... -++.++|++|++. .+.|+.||+.+... .
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~-~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAG-R 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHH-H
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHH-H
Confidence 4789999999999999999999999998 789999999987643221 1345788888765 56788888865310 0
Q ss_pred CCH----HHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005740 539 VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 614 (680)
Q Consensus 539 ~s~----eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 614 (680)
... ..+....+..++.++- .+ +..+ ..+|+||+||+++||++.++|+++ +|++..+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~-~~----~~~~--~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFT-AL----ARPL--HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHH-TT----CSCE--EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred HhccCCeEEEeccCcHHHHHHHH-hc----CCCe--EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000 0000000001111111 00 0000 269999999999999999999987 588766666655
Q ss_pred HHHH
Q 005740 615 LHAL 618 (680)
Q Consensus 615 l~~l 618 (680)
++.+
T Consensus 144 ~~~l 147 (191)
T 1zp6_A 144 FADL 147 (191)
T ss_dssp TTCC
T ss_pred Hhcc
Confidence 5444
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.58 E-value=4.1e-16 Score=183.44 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=111.8
Q ss_pred ccEEEEEEEEEcCCC----CCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEEECCeeCCCCCHH
Q 005740 433 GHVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 433 g~I~f~nVsF~Y~~~----~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~idG~di~~~~~~ 507 (680)
+.|++++. ++|-- .++.|++|+||+ ++|+.++|+|||||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 35777765 33310 134699999999 99999999999999999999999997432 223 11111
Q ss_pred HhhccEEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005740 508 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 586 (680)
Q Consensus 508 ~LR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARA 586 (680)
-+..++++.| +|. -++.||+..+ ...+|+|++| ++.+..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILH 682 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHH
Confidence 1245677666 342 2444444322 1235666664 454555
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEeCCEEEEe
Q 005740 587 ILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 655 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I-~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~~G~Ive~ 655 (680)
.+.+|+++||||||+++|+.....+ .+.++.+.+. .|+|+|++||.......||++..+++|++...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~--~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--IKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc--cCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 6899999999999999998765554 5566666431 37899999999998888998877777776543
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.57 E-value=1.2e-15 Score=154.17 Aligned_cols=150 Identities=17% Similarity=0.257 Sum_probs=95.9
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhc--CCCC-----CCceEEECCeeCC-CCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPLT-DLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p-----~~G~I~idG~di~-~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
-+++|+.++|+||||||||||++.+++ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 6889999987631 11233455667777664 5677
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----
Q 005740 531 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE---- 606 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~---- 606 (680)
+.+.. ..+.++..+.++. +.+.+. -.+|+++|+||+|+.+|++
T Consensus 93 ~~~~~--~~~~~~~~~~~~~--~~~~~~-----------------------------~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLYQ--ASAMMV-----------------------------ESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp EEEEE--CCSHHHHHHHHHH--HHHHHH-----------------------------HSCEEEEEEETSSGGGC------
T ss_pred eEEEe--cCCHHHHHHHHHH--HHHHHh-----------------------------cCCceEEEEeCchHHHHHHhcCC
Confidence 76652 2333333322211 111111 1689999999999999986
Q ss_pred ---HHH-----HHHHHHHHHhccCCCCeEEEEEecCcchHh--------------------hcCEEEEEeCC
Q 005740 607 ---SEH-----YVKGVLHALRNDCKTKRTVIVIAHRLSTIK--------------------AVDRIVVIDDG 650 (680)
Q Consensus 607 ---tE~-----~I~~~l~~l~~~~~~~~TvIvIaHRlsti~--------------------~aD~I~vl~~G 650 (680)
+++ .+.+.|.++.++ .|+|+|+++|-..... .||.|++|++|
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~--~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADE--FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 433 233344444332 3789999999654332 59999999976
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.53 E-value=5.3e-16 Score=171.59 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=104.8
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----HHH--hhccEEEEccCCcCc-cc
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 525 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~----~~~--LR~~I~~V~Qd~~LF-~g 525 (680)
-+++||++++|++++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999988875431 122 477899999998765 67
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC------C--CCChHHHHHHHHHHHHccC-CC-eEE
Q 005740 526 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD------D--LLSGGQKQRIAIARAILRD-PA-ILL 595 (680)
Q Consensus 526 TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge------~--~LSGGQrQRIaIARAll~~-p~-ILI 595 (680)
|+++||.++.. .|+|..+=+ . ++-.--+||+.++|++..+ |. +|+
T Consensus 363 tV~e~l~~a~~-------------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLL 417 (503)
T 2yhs_A 363 VIFDAIQAAKA-------------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVML 417 (503)
T ss_dssp HHHHHHHHHHH-------------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEE
T ss_pred HHHHHHHHHHh-------------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEE
Confidence 89999987621 122222211 0 1222335889999988654 52 454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 005740 596 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633 (680)
Q Consensus 596 LDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH 633 (680)
..+||++.|.... .+.+.+. -+.|.+++||
T Consensus 418 vLDattGq~al~~---ak~f~~~-----~~itgvIlTK 447 (503)
T 2yhs_A 418 TIDASTGQNAVSQ---AKLFHEA-----VGLTGITLTK 447 (503)
T ss_dssp EEEGGGTHHHHHH---HHHHHHH-----TCCSEEEEEC
T ss_pred EecCcccHHHHHH---HHHHHhh-----cCCCEEEEEc
Confidence 4557777655432 1223221 2679999999
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=8.3e-18 Score=179.87 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=120.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC----HHHhh
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 510 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~----~~~LR 510 (680)
|+.+|++++|.. ..+|+++||++++|++++|+|++|||||||++.|.|++.|++|+|.++|.|+.... ....|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 556667777742 35999999999999999999999999999999999999999999999999986533 23457
Q ss_pred ccEEEEccCCcCccc-------------cHHHHHhc---CCC-------CCC--CHHHHHHHHHHh-------------c
Q 005740 511 EKIGFVGQEPQLLQM-------------DIKSNIMY---GCP-------KDV--KNEDIEWAAKQA-------------Y 552 (680)
Q Consensus 511 ~~I~~V~Qd~~LF~g-------------TI~eNI~~---g~~-------~~~--s~eei~~A~~~a-------------~ 552 (680)
+++++|+|++.+|.. +++|.+.. +.. +.. ++..+.+-++.+ .
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 889999999999852 23333210 000 000 111111110000 0
Q ss_pred HHHHHHcCCCCcc-cccC--C-CCCChHHHHHHHHHHHHcc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 005740 553 VHEFILSLPCGYE-TLVD--D-DLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALR 619 (680)
Q Consensus 553 l~dfI~~LP~G~d-T~vg--e-~~LSGGQrQRIaIARAll~------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~ 619 (680)
+.+.+...|+-+- +.+. + ..+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111121000 1111 1 2478999999999999998 688887 99999999999998887764
No 130
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.48 E-value=2.1e-18 Score=168.40 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=108.6
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHHHHHhcCCCCCCCH
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 541 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~s~ 541 (680)
|+.++|+|||||||||+++.|++ |.+|.+++||.++.+. ..+++++|+...+ ..|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 7789999999765432 2456777765332 34666666432
Q ss_pred HHHHHHHHHhcHHHHHHcCCCC----cccccCC------CCC--ChHHHHHHHHHH------HHccCCCeEEEeCCCCCC
Q 005740 542 EDIEWAAKQAYVHEFILSLPCG----YETLVDD------DLL--SGGQKQRIAIAR------AILRDPAILLLDEATSAL 603 (680)
Q Consensus 542 eei~~A~~~a~l~dfI~~LP~G----~dT~vge------~~L--SGGQrQRIaIAR------All~~p~ILILDEaTSaL 603 (680)
++ .+.. .| +|...+. ..+ |+|++||+.++. +++++|+...+|+ .+
T Consensus 66 ------~~-----~~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~l 128 (189)
T 2bdt_A 66 ------TV-----NFLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QM 128 (189)
T ss_dssp ------HH-----HHHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------
T ss_pred ------HH-----HHHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cC
Confidence 00 0111 11 1111111 134 899999988888 9999999888884 79
Q ss_pred CHHHHHHHHHHHHHHhccCCCCeEEEEEecC-cchHhh-cCEEEEEeCCEEEEecChHHHh
Q 005740 604 DSESEHYVKGVLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELL 662 (680)
Q Consensus 604 D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHR-lsti~~-aD~I~vl~~G~Ive~Gth~eLl 662 (680)
|++..+. .+.++.+.+ .+.|+|..+|. ++++.. ||+|+ ++|+++..|+.+-|-
T Consensus 129 d~~~~~~-~~~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 129 GERCLEL-VEEFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp CGGGGHH-HHHHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CHHHHHH-HHHHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 9987776 777776642 35799999999 888866 99999 999999999987664
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.47 E-value=9e-17 Score=180.59 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=123.8
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc--ccHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MDIK 528 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~--gTI~ 528 (680)
.+++++++.+++|+.++|+|||||||||+++.|+|+++|++|.|.++|.+--.++ . +++++++.|+.. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCHH
Confidence 4789999999999999999999999999999999999999999999987632322 1 467888888776 43 3778
Q ss_pred HHHhcCC--CC------CCCHHHHHHHHHHhc-------------HHHHHHc---CCCCcccccCC---------CCCCh
Q 005740 529 SNIMYGC--PK------DVKNEDIEWAAKQAY-------------VHEFILS---LPCGYETLVDD---------DLLSG 575 (680)
Q Consensus 529 eNI~~g~--~~------~~s~eei~~A~~~a~-------------l~dfI~~---LP~G~dT~vge---------~~LSG 575 (680)
++++... .| +.+++|...+.+.++ +.+.+.+ .|.|....+.+ ..+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 8875431 12 566777766666553 2344433 23444332221 25799
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEE--EecCcchHhh-cC
Q 005740 576 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD 642 (680)
Q Consensus 576 GQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIv--IaHRlsti~~-aD 642 (680)
|||||.++|. + | |++||+++.+.+.+.+.++. ..++|+++ +||.++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~---~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD---PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE---TTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc---ccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987751 1 7 99999988776666665543 24688875 8999998754 54
No 132
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.46 E-value=2.7e-15 Score=142.92 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=74.4
Q ss_pred EEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEE
Q 005740 437 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516 (680)
Q Consensus 437 f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V 516 (680)
-+|++++|++ ..+++++||++++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...++ +|
T Consensus 10 ~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~~---~~ 80 (158)
T 1htw_A 10 DEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIAG---KM 80 (158)
T ss_dssp SHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEETT---EE
T ss_pred CHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCCC---cc
Confidence 3456677742 36999999999999999999999999999999999999 9999999999888531 11222 79
Q ss_pred ccCCcCccccHHHHHh-cC
Q 005740 517 GQEPQLLQMDIKSNIM-YG 534 (680)
Q Consensus 517 ~Qd~~LF~gTI~eNI~-~g 534 (680)
+|++.+|.-|+.||+. +|
T Consensus 81 ~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 81 IYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEECTTCSCTTHHHHST
T ss_pred eeccccccCCcHHHHHHcC
Confidence 9999999889999995 46
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=3e-14 Score=152.30 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=79.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhc-CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHHHHHhcCCCCCCCHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNE 542 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r-~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~s~e 542 (680)
.+.|+||+|+||||+++.+.| ++.|+.|+|.++|.+...... -+..+++++|++++. +.+ + .+ ....+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~---~~---~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS--D---MG---NNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh--h---cC---CcchH
Confidence 499999999999999999999 899999999999988765333 377899999988753 211 0 11 01111
Q ss_pred HHHHHH----HHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005740 543 DIEWAA----KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 618 (680)
Q Consensus 543 ei~~A~----~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l 618 (680)
++.+.+ +..++.+++ .||| +..+|+++|||||++ ||+++...+.+.+++.
T Consensus 108 ~~~~~i~~~~~~~~~~~~~--------------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQD--------------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp HHHHHHHHHTTTTC-------------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccccc--------------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 233322 222222222 4676 788999999999999 9999999999888876
Q ss_pred hccCCCCeEEEEEecCcchH
Q 005740 619 RNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 619 ~~~~~~~~TvIvIaHRlsti 638 (680)
.+++++|++||+++.+
T Consensus 162 ----~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 162 ----SKNIRLIMVCDSMSPI 177 (354)
T ss_dssp ----TTTEEEEEEESCSCSS
T ss_pred ----cCCCEEEEEeCCHHHH
Confidence 3468999999997643
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=8.4e-17 Score=176.40 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=90.7
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC-----HHHhhccEEEEc---------
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-----IRWLREKIGFVG--------- 517 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-----~~~LR~~I~~V~--------- 517 (680)
+|+++ + .++|+.++|+|||||||||+++.|+|++.|++|+|.++|.++. +. ...+++++++++
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie-~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE-FDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC-SCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch-hccCCcceEEEccccCcCHHHHHHHHhc
Confidence 66776 4 3799999999999999999999999999999999999998874 22 223455666655
Q ss_pred cCCcCc--c-----ccHHHHHhcCCCC-------CC-CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005740 518 QEPQLL--Q-----MDIKSNIMYGCPK-------DV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 582 (680)
Q Consensus 518 Qd~~LF--~-----gTI~eNI~~g~~~-------~~-s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIa 582 (680)
|+|.++ . .|+.+|+.++... ++ +..+..+.+...++.++. -...|||||+||
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR-- 301 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--
Confidence 888763 2 3788888764110 11 122333334443332221 013699999999
Q ss_pred HHHHHccCCCeEE
Q 005740 583 IARAILRDPAILL 595 (680)
Q Consensus 583 IARAll~~p~ILI 595 (680)
||||++.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.44 E-value=2.3e-15 Score=161.27 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=79.9
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-CCCceEEEC-CeeCCCCCHHHhhccEEEEccCCcCccc-cH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQM-DI 527 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-p~~G~I~id-G~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI 527 (680)
.-++++++. .+|++++|+||||||||||++.|+|... |..|+|.++ |.+.. ...++.+++|+|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 358888885 4799999999999999999999999999 999999997 76642 2456789999999998865 89
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHH
Q 005740 528 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 587 (680)
Q Consensus 528 ~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAl 587 (680)
+|+-. .+.+.+++.+. +.++...+ |+.-..+. .+|| ||+||+|||+++
T Consensus 279 ~e~~l----~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGL----WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCC----CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhh----cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 98532 24555555332 22333322 22222222 3789 999999999975
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.44 E-value=5.1e-14 Score=149.67 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=110.1
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH----Hhhcc--EEEEccCCcCc-cccHHHHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLREK--IGFVGQEPQLL-QMDIKSNI 531 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~----~LR~~--I~~V~Qd~~LF-~gTI~eNI 531 (680)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..++ ..|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999999776533 34444 45999998887 46889999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCccccc----CC-CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q 005740 532 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV----DD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~v----ge-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 606 (680)
.++.. .++|..+ |- ..-..=-++.-.++|++..++++++||..|. .|..
T Consensus 205 ~~~~~-------------------------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~ 258 (328)
T 3e70_C 205 QHAKA-------------------------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV 258 (328)
T ss_dssp HHHHH-------------------------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH
T ss_pred HHHHh-------------------------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH
Confidence 76510 0122111 11 0001112333459999999999999996665 3333
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEEecCcchH----------hhcCEEEEEeCCEEE
Q 005740 607 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDGRII 653 (680)
Q Consensus 607 tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti----------~~aD~I~vl~~G~Iv 653 (680)
. .++.+.+. .+.|.|++||--.+. ...-.|..+..|+-+
T Consensus 259 ~------~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 259 E------QARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H------HHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H------HHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 2 22333221 368999999943221 224578888888765
No 137
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.42 E-value=1.8e-15 Score=154.15 Aligned_cols=136 Identities=17% Similarity=0.139 Sum_probs=97.0
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHh---cCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHHHHHhcCC--
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-- 535 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~---r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~-- 535 (680)
+++.++|+||+||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|+..++ +.|+.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 23455667777877765 458899986410
Q ss_pred ---C------CCCCHHHHHHHHHHhcHHHHHHcCCCCcc-------------cccCC---CCCChHHHHHHHHHHHH-cc
Q 005740 536 ---P------KDVKNEDIEWAAKQAYVHEFILSLPCGYE-------------TLVDD---DLLSGGQKQRIAIARAI-LR 589 (680)
Q Consensus 536 ---~------~~~s~eei~~A~~~a~l~dfI~~LP~G~d-------------T~vge---~~LSGGQrQRIaIARAl-l~ 589 (680)
. ...+.++.... ..+. +.+ ..+.. ..||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l----------~~~~-~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEAL----------DKIC-EVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHH----------HTTC-CCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCCCCHHHHHHH----------Hhhc-CCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 0 00122222211 1111 111 01111 26898 66 888 99
Q ss_pred CCCeEEEe----CCCCCCCHHHHHHHHHHHHHHh
Q 005740 590 DPAILLLD----EATSALDSESEHYVKGVLHALR 619 (680)
Q Consensus 590 ~p~ILILD----EaTSaLD~~tE~~I~~~l~~l~ 619 (680)
+|++++|| |||++||..+++.+.+.++++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999999999888764
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.41 E-value=1.5e-13 Score=149.82 Aligned_cols=149 Identities=13% Similarity=0.208 Sum_probs=100.0
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHH--HhcCCCCCCc-----eEEECCeeC-CCCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG-----QIYIDGFPL-TDLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~L--L~r~y~p~~G-----~I~idG~di-~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
-|++|+.++|+||||||||||++. +.+..+|+.| .|++|+.+. +......+++++++.+| ++.||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4566666444 899999763 22223445566777666 67888
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHHH
Q 005740 531 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSESE 608 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaLD~~tE 608 (680)
+.+.. ..+.++..+. +.-+++++ .+|+++|+||+|+.+|++..
T Consensus 247 i~~~~--~~~~~~~~~~---------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYAR--AYNADHQLRL---------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEE--CCSHHHHHHH---------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEec--cCChHHHHHH---------------------------------HHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 88763 2222222222 22222222 47999999999999997644
Q ss_pred ------------HHHHHHHHHHhccCCCCeEEEEEecCcc-------------------hHhh-cCEEEEEeCCE
Q 005740 609 ------------HYVKGVLHALRNDCKTKRTVIVIAHRLS-------------------TIKA-VDRIVVIDDGR 651 (680)
Q Consensus 609 ------------~~I~~~l~~l~~~~~~~~TvIvIaHRls-------------------ti~~-aD~I~vl~~G~ 651 (680)
..+.+.|.++.++ .+.|+|+|+|-.+ .+.+ ||.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4566677776543 3789999999832 2333 89999999864
No 139
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.40 E-value=5e-13 Score=144.64 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=66.6
Q ss_pred CCChHHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEE
Q 005740 572 LLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 644 (680)
Q Consensus 572 ~LSGGQrQRI------aIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I 644 (680)
.|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|.++. +++|+|+|||+......||++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK----SIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC----SCSEEEEEESCGGGGGGCSEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc----cCCeEEEEEChHHHHhhCCEE
Confidence 7999999987 678999999 99999999999999999999999998862 346999999999877789999
Q ss_pred EEEe
Q 005740 645 VVID 648 (680)
Q Consensus 645 ~vl~ 648 (680)
++|+
T Consensus 356 ~~l~ 359 (371)
T 3auy_A 356 INVK 359 (371)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=3.9e-13 Score=126.66 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=71.9
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc--eEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 666666443221
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH
Q 005740 530 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 609 (680)
Q Consensus 530 NI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 609 (680)
+++.+|++|+|||+++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2467899999999998 6655588
Q ss_pred HHHHHHHHHhccCCCCeE-EEEEecC
Q 005740 610 YVKGVLHALRNDCKTKRT-VIVIAHR 634 (680)
Q Consensus 610 ~I~~~l~~l~~~~~~~~T-vIvIaHR 634 (680)
.+.+.++++.++ |+| +|+++|+
T Consensus 102 ~l~~li~~~~~~---g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNS---GKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHH---TCCEEEEEESS
T ss_pred HHHHHHHHHHHc---CCcEEEEECCC
Confidence 888888887643 577 7777775
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.32 E-value=1.6e-15 Score=153.01 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=68.3
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh-cCC------------CCCCceEEECCeeCCCCCHHHhhccEEEEc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVG 517 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~-r~y------------~p~~G~I~idG~di~~~~~~~LR~~I~~V~ 517 (680)
...+++||++++|+.++|+||||||||||+++|+ +++ +|..|++ +|.++...+.+.+.+. ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 7777765 6665555555555432 23
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCC--hHHHHHH-HHHH-HHccCCCe
Q 005740 518 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS--GGQKQRI-AIAR-AILRDPAI 593 (680)
Q Consensus 518 Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LS--GGQrQRI-aIAR-All~~p~I 593 (680)
++.+++.+++.+|+ ||. +. +++.++++.. ....+. ..+. ..-+++. .-++ .++..|+.
T Consensus 90 ~~~~~~~~~~~~~~-~~~-~~---~~i~~~~~~~------------~~vild-~~~~g~~~~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGV-PR---KNLEDNVDKG------------VSTLLV-IDWQGAFKFMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TTCEEEEEEETTEE-EEE-EC---TTHHHHHHHT------------CEEEEE-CCHHHHHHHHHHSGGGEEEEEEECSCH
T ss_pred cCceehhhhhcccc-CCC-CH---HHHHHHHHcC------------CeEEEE-cCHHHHHHHHHhcCCCeEEEEEECCcH
Confidence 45555555555554 442 12 2333333321 111110 0011 1124444 2222 34677888
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh
Q 005740 594 LLLDEATSALDSESEHYVKGVLHALR 619 (680)
Q Consensus 594 LILDEaTSaLD~~tE~~I~~~l~~l~ 619 (680)
.+|||.+++.|..++..+.+.+++..
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~~ 177 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGAA 177 (231)
T ss_dssp HHHHHC--------------CHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 88999999999999988887776654
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.29 E-value=2.1e-13 Score=143.57 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=81.2
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE---CCeeCCCCCHHHhh-ccEEEEccCCcC------ccccH
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLR-EKIGFVGQEPQL------LQMDI 527 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i---dG~di~~~~~~~LR-~~I~~V~Qd~~L------F~gTI 527 (680)
+++.+|++++|+||||||||||+|.|. +.+|+.|+|.+ +|.++..... ..+ +.+|+|+|+|-+ .+-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 9998876442 223 369999999954 35678
Q ss_pred HHHH--hcC-----------C-CCCCCHHHHHHHHHHhcHHH-HHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 528 KSNI--MYG-----------C-PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 528 ~eNI--~~g-----------~-~~~~s~eei~~A~~~a~l~d-fI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
||+ .|+ + ..+...+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 898 443 1 11122456888888888764 333322 248998888999998
No 143
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.27 E-value=2.9e-14 Score=142.67 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=104.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCeeCCC-CCHHHhhccEEEEccCC------cCc
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLTD-LDIRWLREKIGFVGQEP------QLL 523 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y---~p~~G~I~i--------dG~di~~-~~~~~LR~~I~~V~Qd~------~LF 523 (680)
.+.+++|+|+|||||||++++|.+.| .++.|+|+. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999887 789999998 7888763 56778999999999986 556
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--C-CCChHHHHHHHHHHHHccCCCeEEEeCCC
Q 005740 524 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--D-LLSGGQKQRIAIARAILRDPAILLLDEAT 600 (680)
Q Consensus 524 ~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~-~LSGGQrQRIaIARAll~~p~ILILDEaT 600 (680)
..++.+|++ ++++..++..+..|+++.....+.++.+.. . -++|+ .++++++++++++|+++++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 677777762 578999999999999999877777766642 2 56776 5677888999999999885
Q ss_pred C
Q 005740 601 S 601 (680)
Q Consensus 601 S 601 (680)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 3
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.1e-14 Score=151.11 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=103.2
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCC-cCc-cccHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 528 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~-~LF-~gTI~ 528 (680)
.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+......++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999987 79999999997776777788899999986 333 34667
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC-------
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS------- 601 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTS------- 601 (680)
|||..... .-.+++.. .. .--...++ ..|||||+||..|++|+..+|++| |||+.
T Consensus 110 Deid~~~~-~r~~~~~~-~~-~~~~~~~l-------------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCP-RRSDRETG-AS-VRVVNQLL-------------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-----------C-TTHHHHHH-------------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhc-ccCCCcch-HH-HHHHHHHH-------------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 78765422 11111100 00 00001111 158999999999999999999985 99974
Q ss_pred -----CCCHHHHHHHHHHH
Q 005740 602 -----ALDSESEHYVKGVL 615 (680)
Q Consensus 602 -----aLD~~tE~~I~~~l 615 (680)
.-|.+....|.+.+
T Consensus 172 ~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEECCSCCHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 33666666665544
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=1.5e-12 Score=125.81 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=76.2
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCce-EEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 535 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~-I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~ 535 (680)
||++++|+.++|+||+|+|||||++.+++.+.|.+|. +.+ + +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------------------~---------~~~------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------------------F---------DTK------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------------------E---------EHH-------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------------------E---------EHH-------
Confidence 5678899999999999999999999999999877763 211 0 111
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHH
Q 005740 536 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGV 614 (680)
Q Consensus 536 ~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~ 614 (680)
++.+..+.+ ... + ... -+...+.+|++|||||+++ ++|+.....+.+.
T Consensus 77 -------~~~~~~~~~-----~~~---~--------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -------DLIFRLKHL-----MDE---G--------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHHHHH-----HHH---T--------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHHHHH-----hcC---c--------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111111100 000 0 000 1222345999999999996 8999999988888
Q ss_pred HHHHhccCCCCeEEEEEecCcc
Q 005740 615 LHALRNDCKTKRTVIVIAHRLS 636 (680)
Q Consensus 615 l~~l~~~~~~~~TvIvIaHRls 636 (680)
++...+ +++|+|++||+..
T Consensus 126 l~~~~~---~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYN---NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHH---TTCEEEEECCCCS
T ss_pred HHHHHH---cCCCEEEEcCCCh
Confidence 887653 4789999999874
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=1.1e-12 Score=143.63 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=93.8
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHh
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 532 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~ 532 (680)
-++++|++++|+.++|||++|||||||++.|.+... .+++.+.. .+...+++|.|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ft-----Tl~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFT-----TLSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTC-----SSCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccc-----eecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 34444433 34456788887651 1123333322
Q ss_pred cCCC----CCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q 005740 533 YGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 606 (680)
Q Consensus 533 ~g~~----~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge--~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 606 (680)
+... .....+ ..+..+.+ +..+.- +|-. .+ .+||+||+||.++|||+..+|.||+| +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era--~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIART--RVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSS--SEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHH--HhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2100 011111 11111111 001100 1111 12 26999999999999999999999999 889987
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEEec
Q 005740 607 SEHYVKGVLHALRNDCKTKRTVIVIAH 633 (680)
Q Consensus 607 tE~~I~~~l~~l~~~~~~~~TvIvIaH 633 (680)
++. ..+.+.+..+. .+.+++.||-
T Consensus 283 ~~~-~~~~l~~~l~~--~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAR--EGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHT--TTSCEEECCT
T ss_pred hHH-HHHHHHHHHHh--cCCeEEEEEC
Confidence 663 33344333221 3567777764
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.20 E-value=2e-13 Score=144.09 Aligned_cols=142 Identities=17% Similarity=0.233 Sum_probs=99.0
Q ss_pred cccccEEEEEEEEEcCCCCCCCcccceeEEe-------------------eCCcEEEEeCCCCCcHHHHHHHHhcCCC--
Q 005740 430 RLMGHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE-- 488 (680)
Q Consensus 430 ~~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I-------------------~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-- 488 (680)
...+.|+++||++.|. ++++++|+++ ++|+++||+|+||||||||+++|.|++.
T Consensus 33 ~~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 33 GINEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp HHCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred CCccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3456799999999993 5999999998 8999999999999999999999999999
Q ss_pred CCCceEEE---CCeeCCCCCHHHhhccEEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCc
Q 005740 489 PSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 564 (680)
Q Consensus 489 p~~G~I~i---dG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~ 564 (680)
|++|+|.+ ||.+.. ...++.+++| |+..++ .-|+.+|+.+... ..+-.+ -...| -|
T Consensus 108 ~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~-------------l~~~~~-~i~~P-~~ 167 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVSD-------------LKSGVP-NVTAP-VY 167 (308)
T ss_dssp TTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHH-------------HTTTCS-CEEEC-CE
T ss_pred CCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHH-------------HhCCCC-ceecc-cc
Confidence 99999999 998752 2456778888 765543 4467777654310 000000 00112 11
Q ss_pred ccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 005740 565 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 605 (680)
Q Consensus 565 dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 605 (680)
+ .+.+ +|++.+.+.+.+++++|+|.+..-.|.
T Consensus 168 ~-------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 168 S-------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp E-------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred c-------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1 1222 334333455678999999999887763
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=4.3e-12 Score=133.38 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=70.5
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE---CCeeCCCCCHHHhhccEEEEccCCc-------------
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ------------- 521 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i---dG~di~~~~~~~LR~~I~~V~Qd~~------------- 521 (680)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 556789999999999999999999999999999999999 9999876552222246999999985
Q ss_pred ---Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHhcH-HHHHHcCC
Q 005740 522 ---LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYV-HEFILSLP 561 (680)
Q Consensus 522 ---LF-~gTI~eNI~~g~~--~~~s~eei~~A~~~a~l-~dfI~~LP 561 (680)
|| +-|+ ||++|+.. ....++.+.++++..++ .+...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 4578 99988521 12234678999999998 46555544
No 149
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.16 E-value=1e-12 Score=134.50 Aligned_cols=103 Identities=20% Similarity=0.164 Sum_probs=80.1
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCeeC-CCCCHHHhhccEEEEcc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPL-TDLDIRWLREKIGFVGQ 518 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~---r~y~p~~G~I~--------idG~di-~~~~~~~LR~~I~~V~Q 518 (680)
.++++.+ ++|+++||+|||||||||++++|+ |++.|++|.|+ .+|.++ .+.....+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3555544 789999999999999999999999 99999999999 999999 45678899999999995
Q ss_pred ------CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCc
Q 005740 519 ------EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 564 (680)
Q Consensus 519 ------d~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~ 564 (680)
..+++..++.+||+ .+++..++..+..++.+.+....+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~ 138 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRR 138 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHH
Confidence 45677888888764 356767777777777665544333
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.14 E-value=3.6e-11 Score=125.96 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=99.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++++.+..|+|.+.+.|++.-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5667788888532 2 788888 99999999999999999999999999999999999998875321110
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeE
Q 005740 515 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 594 (680)
Q Consensus 515 ~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~IL 594 (680)
| +...++.. |++-......-.-.+-||.+|+++...+++++
T Consensus 144 ---q-------------------------l~~~~~~~-----------~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 ---Q-------------------------LRLLGEKV-----------GVPVLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ---H-------------------------HHHHHHHH-----------TCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ---H-------------------------HHHhcccC-----------CeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0 00001111 12111111112344567999999988999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEe
Q 005740 595 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 632 (680)
Q Consensus 595 ILDEa-TSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIa 632 (680)
|+||| ++++|...-..+.+..+... .+.+++++.
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~ 219 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLD 219 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEe
Confidence 99999 99999987777776666552 345655554
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.12 E-value=1.6e-11 Score=129.16 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=79.1
Q ss_pred eeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC
Q 005740 456 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 535 (680)
Q Consensus 456 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~ 535 (680)
++++.++|++++|+|++||||||++..|++++.++.|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 4556788999999999999999999999999999999999988775321 001
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH---HHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q 005740 536 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATSALDSESEHYVK 612 (680)
Q Consensus 536 ~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI---aIARAll~~p~ILILDEaTSaLD~~tE~~I~ 612 (680)
+++...++..+ +| . + ...|||+.|++ +|+||+.++|+++|+|||.. ..+...++
T Consensus 149 ------eqL~~~~~~~g-------l~----~-~--~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~ 205 (306)
T 1vma_A 149 ------EQLKIWGERVG-------AT----V-I--SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM 205 (306)
T ss_dssp ------HHHHHHHHHHT-------CE----E-E--CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred ------HHHHHHHHHcC-------Cc----E-E--ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence 22222222222 11 1 1 14589999999 99999999999999999984 23333444
Q ss_pred HHHHH
Q 005740 613 GVLHA 617 (680)
Q Consensus 613 ~~l~~ 617 (680)
+.+.+
T Consensus 206 ~eL~~ 210 (306)
T 1vma_A 206 EELRK 210 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 152
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.11 E-value=2.3e-11 Score=134.99 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=56.4
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 506 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~ 506 (680)
.+.+++... ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455555432 2489999999999 9999999999999999999999999999999999999876543
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.07 E-value=1.3e-10 Score=121.76 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=94.8
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 540 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s 540 (680)
++|++++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998888 36777888773 333334332
Q ss_pred HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhc
Q 005740 541 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 620 (680)
Q Consensus 541 ~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~ 620 (680)
..++..+ +|. ... ..++..+.+|+|+ ++|+++|+| |+++|+..+..+.+..+-+..
T Consensus 155 -----~~~~~~g-------l~~----~~~----~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 155 -----TYAELLQ-------APL----EVC----YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp -----HHHTTTT-------CCC----CBC----SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred -----HHHHhcC-------CCe----Eec----CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 2222211 111 111 1235567888875 999999999 999998777655543332211
Q ss_pred cCCCCeEEEEE--ecCcchHhh-cCEEEEEeCCEEEEe
Q 005740 621 DCKTKRTVIVI--AHRLSTIKA-VDRIVVIDDGRIIEV 655 (680)
Q Consensus 621 ~~~~~~TvIvI--aHRlsti~~-aD~I~vl~~G~Ive~ 655 (680)
. ..+.+++++ +|....+.. ||++..++.|.|+-.
T Consensus 211 ~-~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 E-SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp C-TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred c-CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 123456666 898777765 787766777777753
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.02 E-value=3.9e-13 Score=139.40 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=99.8
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEE
Q 005740 436 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 515 (680)
Q Consensus 436 ~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~ 515 (680)
+++++...|.. ..+++++++++++| ++|+||+|||||||++.|.+... .|.|.++|.++.+......++.++.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 44566666742 35899999999999 99999999999999999999885 8999999988766555566777888
Q ss_pred EccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 005740 516 VGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 588 (680)
Q Consensus 516 V~Qd~~-LF-~gTI~eNI-~~g~~~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll 588 (680)
++|++. .+ .-++.||| .++..... ..++..+.+ .+++. .|||||+||..+|+|+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH-------------HHTTCCTTCCEEEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEec
Confidence 898864 33 34667787 44421110 112222221 22222 37899999999999999
Q ss_pred cCCCeEEEeCCC
Q 005740 589 RDPAILLLDEAT 600 (680)
Q Consensus 589 ~~p~ILILDEaT 600 (680)
.+|++ ||++.
T Consensus 186 ~~p~~--ld~~l 195 (278)
T 1iy2_A 186 NRPDI--LDPAL 195 (278)
T ss_dssp SCTTS--SCHHH
T ss_pred CCchh--CCHhH
Confidence 99987 68764
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.99 E-value=5.1e-13 Score=136.41 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=100.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 514 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~ 514 (680)
.+++++.+.|.. ..+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 345677777742 35899999999999 99999999999999999999885 899999998876655556667788
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHH
Q 005740 515 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 587 (680)
Q Consensus 515 ~V~Qd~~-LF-~gTI~eNI-~~g~~~~~----s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAl 587 (680)
.++|+.. .+ .-++.||| .++..... ..++..+.+ .+++. .|||||+||..+|+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888764 33 34567777 45421110 112222211 22222 3689999999999999
Q ss_pred ccCCCeEEEeCCCC
Q 005740 588 LRDPAILLLDEATS 601 (680)
Q Consensus 588 l~~p~ILILDEaTS 601 (680)
..+|++ ||++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 788764
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.98 E-value=2.4e-11 Score=118.46 Aligned_cols=142 Identities=18% Similarity=0.110 Sum_probs=80.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCC-----------CCceEEECCeeCCC--CCHHHhhccEEEEccCCcCccccHHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNI 531 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p-----------~~G~I~idG~di~~--~~~~~LR~~I~~V~Qd~~LF~gTI~eNI 531 (680)
+++|+|++|||||||++.+.+...| +.|+|.+||.++.- +|....++..++++|...-.++- +
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~----i 106 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA----L 106 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE----E
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE----E
Confidence 6999999999999999999998765 58999999976531 22222233333433321100000 0
Q ss_pred hcCCCCCCCHHHHHHHHHHhcHHHHHHc-CCCCcc-cccCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 005740 532 MYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYE-TLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 608 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A~~~a~l~dfI~~-LP~G~d-T~vge~-~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE 608 (680)
+- .|.++..-.+.++. ..+.+.. -+.+.- -.++.+ .|..-..++..+||++.++|+++++| |||+|.++.
T Consensus 107 -~v--~d~~~~~s~~~~~~--~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 107 -LV--YDIAKHLTYENVER--WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp -EE--EETTCHHHHHTHHH--HHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred -EE--EECcCHHHHHHHHH--HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 00 01221111110000 0011111 111111 112332 34333334578999999999999999 999999999
Q ss_pred HHHHHHHHH
Q 005740 609 HYVKGVLHA 617 (680)
Q Consensus 609 ~~I~~~l~~ 617 (680)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887754
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.97 E-value=6.5e-11 Score=116.47 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=68.5
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC-------------CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCcc
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 524 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~-------------p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~ 524 (680)
+..-+|+.++|+||||||||||+++|++.++ |..|+ +||++..-++.+.+++.+ .|+.+|+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999986 78898 799999999999999976 69999999
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHH
Q 005740 525 MDIKSNIMYGCPKDVKNEDIEWAAK 549 (680)
Q Consensus 525 gTI~eNI~~g~~~~~s~eei~~A~~ 549 (680)
+++.+| .||. +.+.+.++++
T Consensus 89 ~~~~~n-~YGt----~~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGN-MFGT----KFETVHQIHK 108 (197)
T ss_dssp EEETTE-EEEE----EHHHHHHHHH
T ss_pred hhhhce-eccc----chhhHHHHHh
Confidence 999999 5883 2444555443
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.97 E-value=2.6e-11 Score=117.97 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCC-------------CCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~-------------p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
|+.++|+||||||||||+++|+++++ |..|++ ||.++...+.+.+++.+. |+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 899986 999888888887777543 777788888877
Q ss_pred HHhcCCCCCCCHHHHHHHHHH----------hcHHHHHHc--CC------------CCcccccCCC--CCChHHHHHHHH
Q 005740 530 NIMYGCPKDVKNEDIEWAAKQ----------AYVHEFILS--LP------------CGYETLVDDD--LLSGGQKQRIAI 583 (680)
Q Consensus 530 NI~~g~~~~~s~eei~~A~~~----------a~l~dfI~~--LP------------~G~dT~vge~--~LSGGQrQRIaI 583 (680)
|+ ||. +.+++.++++. .++. .+.. -+ +-+...+-++ .-....+||++-
T Consensus 76 ~~-yg~----~~~~i~~~l~~g~~~il~~~~~g~~-~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 76 NY-YGS----TVASVKQVSKSGKTCILDIDMQGVK-SVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EE-EEE----EHHHHHHHHHTTCEEEEECCHHHHH-HHHTCGGGCCEEEEEECSCC------------------------
T ss_pred ee-ccC----cHHHHHHHHHcCCeEEEEEcHHHHH-HHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 76 662 24455555443 1221 1222 11 2233333322 233566778888
Q ss_pred HHHHc-----cCCCeEEEeC
Q 005740 584 ARAIL-----RDPAILLLDE 598 (680)
Q Consensus 584 ARAll-----~~p~ILILDE 598 (680)
|++-+ +.++.+|..+
T Consensus 150 ~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------CCCCSEEEECS
T ss_pred HHHHHHhhcccCCcEEEECc
Confidence 88765 5566666654
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.96 E-value=1.6e-11 Score=137.06 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=99.7
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc--CCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc---c---
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---D--- 526 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g---T--- 526 (680)
-+++++.+|..+.|+|+|||||||+++.|.. +|.++.|++.+.+.|.+......+.. =|+++.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788899999999999999999999999877 78888899999899888765555432 1233210 0
Q ss_pred HHHHHhcCCCCCCCHHHHH---HHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHH----------HHHHHHccCCC-
Q 005740 527 IKSNIMYGCPKDVKNEDIE---WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI----------AIARAILRDPA- 592 (680)
Q Consensus 527 I~eNI~~g~~~~~s~eei~---~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRI----------aIARAll~~p~- 592 (680)
..+++..- .+|+. +.++.+++.++- +|+..+. ..+||||+||. ++||++-..|.
T Consensus 232 a~~~L~~~------~~EmerR~~ll~~~Gv~~i~-----~yn~~~~-~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 232 AANALRWC------VNEMERRYKLMSALGVRNLA-----GYNEKIA-EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHTTCSSHH-----HHHHHHH-HHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHH------HHHHHHHHHHHHHcCCccHH-----HHHHHHH-HHhhcCCcccccccccccchhccccccccCCcE
Confidence 11111110 01111 122222211100 1111111 13688888763 46788888998
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhccC-CCCeEEEEEecCcc
Q 005740 593 ILLLDEATSALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLS 636 (680)
Q Consensus 593 ILILDEaTSaLD~~tE~~I~~~l~~l~~~~-~~~~TvIvIaHRls 636 (680)
++++||+++.+|.. .+.+.+.+.++.+.. ..|-++|++|||++
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999999843 344555565553221 13779999999998
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.95 E-value=1.3e-10 Score=114.00 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=57.9
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc-cHHHHHh
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIM 532 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI~eNI~ 532 (680)
|+++++|+.++|+||||||||||+++|+|++ | .+.++|.++........++.++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 5788999999999999999999999999997 4 689999888877766678889999999988854 4455543
No 161
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=1.4e-10 Score=121.85 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=57.4
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE---CCeeCCCCCHHHhhccEEEEccCCcCcc-----ccHHH
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLLQ-----MDIKS 529 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i---dG~di~~~~~~~LR~~I~~V~Qd~~LF~-----gTI~e 529 (680)
+++.+|++++|+|+||+|||||+|.|.|...|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 898876533 222223899999997664 578 9
Q ss_pred HHh--cC-------------CC-CCCCHHHHHHHHHHhcHHH
Q 005740 530 NIM--YG-------------CP-KDVKNEDIEWAAKQAYVHE 555 (680)
Q Consensus 530 NI~--~g-------------~~-~~~s~eei~~A~~~a~l~d 555 (680)
|+. |. +. .+..+..+.+|++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 993 21 10 1122356778888877754
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.8e-10 Score=116.07 Aligned_cols=169 Identities=19% Similarity=0.184 Sum_probs=94.7
Q ss_pred Ccccce-eEEeeCCcEEEEeCCCCCcHHHHH-HHHhcCCCCCCceEEECCeeCCCCCHHHhhc---cEEEEccCCcCccc
Q 005740 451 PILNHV-CLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQM 525 (680)
Q Consensus 451 ~VL~~i-sl~I~~Ge~vAIVG~SGsGKSTL~-~LL~r~y~p~~G~I~idG~di~~~~~~~LR~---~I~~V~Qd~~LF~g 525 (680)
+.|+++ .--+++|+.++|+||+||||||++ +++....+...+.+++++. .+.+++++ ++++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHHHhh---
Confidence 457776 667999999999999999999995 5556665555566666653 23333332 34554443210
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHc--cCCCeEEEeCCCCCC
Q 005740 526 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL 603 (680)
Q Consensus 526 TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaL 603 (680)
.+|+.+- +...+ .+..++. .+..+-+. +....+.+..++.++ .+|+++++|++|+-+
T Consensus 83 --~~~l~~~---~~~~~-------------~~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 83 --KGMFAMV---DAFTA-------------GIGKSKE-YEKYIVHD--LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp --HTSEEEE---ECSTT-------------TTCC--C-CCSCBCSC--CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred --CCcEEEE---ecchh-------------hcccccc-cccccccC--ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 0112111 00000 0000000 00011111 123344444455555 479999999999887
Q ss_pred --CHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch---------HhhcCEEEEEeC
Q 005740 604 --DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST---------IKAVDRIVVIDD 649 (680)
Q Consensus 604 --D~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst---------i~~aD~I~vl~~ 649 (680)
|+...+.....+.+..++ .|+|+|+++|.... ...||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAG--TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHH--TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 553334444455554432 47899999998764 356999999974
No 163
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.93 E-value=1.8e-12 Score=138.29 Aligned_cols=152 Identities=17% Similarity=0.256 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCC-------cEEEEeCCCCCcHHHHHHHHhcCC----CCCCceEEECCeeCCCCCH
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDI 506 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~G-------e~vAIVG~SGsGKSTL~~LL~r~y----~p~~G~I~idG~di~~~~~ 506 (680)
++++..|.. ..+++++++.+++| +.++|+||+|+|||||++.+++.. .|.+|.+..+|.|+.++..
T Consensus 22 ~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344445542 35899999999987 899999999999999999999998 7788888887776643321
Q ss_pred HHhhccEEEEccCCcCccccHHHHHhcCC-CCCCC----HHHHHHHHHHhcHHHHHHcCCCCcccccCC----CCCChHH
Q 005740 507 RWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD----DLLSGGQ 577 (680)
Q Consensus 507 ~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~s----~eei~~A~~~a~l~dfI~~LP~G~dT~vge----~~LSGGQ 577 (680)
..-+..|.++.|...++. ++.|++.... ....+ .++ ..+.+ . ..+|. . +.++. ..||+|+
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~~i--~---~~l~~-~-~li~at~~~~~Ls~~l 167 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAKSI--R---IDIQP-F-TLVGATTRSGLLSSPL 167 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CC-C-EEEEEESCGGGSCHHH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccccc--c---ccCCC-e-EEEEecCCcccCCHHH
Confidence 112567999999877765 8888874220 00000 000 00110 0 11221 1 11221 3799999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 005740 578 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 619 (680)
Q Consensus 578 rQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~ 619 (680)
|||++++ ..||+.+...+.+.|++..
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 9998665 6788888888888777764
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.90 E-value=1.8e-09 Score=119.78 Aligned_cols=179 Identities=14% Similarity=0.192 Sum_probs=117.3
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc-eEEECCeeCCCCCHHHhhccE-EEEccCCcCccccHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIK 528 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~di~~~~~~~LR~~I-~~V~Qd~~LF~gTI~ 528 (680)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+. +.+.+++++++ +.... -. .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~------~~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGN------IN-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHT------CC-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcC------CC-H
Confidence 468888888999999999999999999999999988776555 5666443 44556665543 11110 01 1
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCH
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS 605 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaLD~ 605 (680)
+++.-| ..++++.....+.+ +.+...| -.+.+ ..+|++|.+ +.||++. .+|+++|+|+++.-.+.
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAM---GSLSNAG----IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHH---HHHHSSC----EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 234434 35666655444333 2233322 22222 478999876 6778877 57999999999987743
Q ss_pred H--------HHHHHHHHHHHHhccCCCCeEEEEEec-----------Ccc--------hH-hhcCEEEEEeCCEEE
Q 005740 606 E--------SEHYVKGVLHALRNDCKTKRTVIVIAH-----------RLS--------TI-KAVDRIVVIDDGRII 653 (680)
Q Consensus 606 ~--------tE~~I~~~l~~l~~~~~~~~TvIvIaH-----------Rls--------ti-~~aD~I~vl~~G~Iv 653 (680)
. .-..+.+.|+++.++ .+.|+|+++| |+. .+ ..||.|++|..++.-
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 1 124555666666543 3789999999 132 23 459999999877653
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.90 E-value=5e-11 Score=120.02 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=53.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCC--------
Q 005740 434 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 505 (680)
Q Consensus 434 ~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~-------- 505 (680)
.|+++|++..|. . ++++++ +.++|+||||||||||+++|++++.|++|+|.+||.++...+
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865442 1 566677 899999999999999999999999999999999999984332
Q ss_pred HHHhhccEEEEccC
Q 005740 506 IRWLREKIGFVGQE 519 (680)
Q Consensus 506 ~~~LR~~I~~V~Qd 519 (680)
....+..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357889999985
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.90 E-value=1.2e-10 Score=112.72 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCeeCCCCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~----------idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
+|+.++|+||||||||||+++|.+++++ ..|.|. +||+++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999873 444443 47888888888888874 569999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHH
Q 005740 531 IMYGCPKDVKNEDIEWAAK 549 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~ 549 (680)
.||. +.+++.++++
T Consensus 81 -~yg~----~~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGT----KLETIRKIHE 94 (180)
T ss_dssp -EEEE----EHHHHHHHHH
T ss_pred -cccc----cHHHHHHHHH
Confidence 6772 2455555544
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.87 E-value=7.8e-11 Score=135.43 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCC-ceEEECCeeCCCCCHHHhhccEEEEccCC--------
Q 005740 450 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP-------- 520 (680)
Q Consensus 450 ~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~-G~I~idG~di~~~~~~~LR~~I~~V~Qd~-------- 520 (680)
..+++++++.+++|+.+.|+||+|+|||||++.|.++..+.. |.+.+++.+... ....++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecchHHHHHHHH
Confidence 368999999999999999999999999999999999999988 899998876654 345688887754
Q ss_pred --------------cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005740 521 --------------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 585 (680)
Q Consensus 521 --------------~LF-~gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIAR 585 (680)
..| ..++.+|+..++. ......+... ......+++..+. ++..- .+.+|+|++|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCceEE--echhh-cCCccccccccccCce
Confidence 111 2233344433311 0000000000 1111222222211 11100 1358999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 005740 586 AILRDPAILLLDEATSALDSESEHYVKGVLHA 617 (680)
Q Consensus 586 All~~p~ILILDEaTSaLD~~tE~~I~~~l~~ 617 (680)
....++.+|+|||... |++.....+.++|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 799888888888865
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.86 E-value=5.6e-09 Score=111.85 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=86.8
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCce-EEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 537 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~-I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 537 (680)
-+++|+.+.|.||+|||||||+.-++.-.....|. ++++... ..+. ...+++++.+|+ +.+. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~-~- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVS-Q- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEE-C-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEe-c-
Confidence 58899999999999999999977776554433333 3444321 1111 111122222111 1111 0
Q ss_pred CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccC--CCeEEEeCCCCCC----------CH
Q 005740 538 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS 605 (680)
Q Consensus 538 ~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~--p~ILILDEaTSaL----------D~ 605 (680)
| .++ .|-+.++|+++++ |+++|+||+|+-+ |+
T Consensus 121 -----------------------~-----------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 121 -----------------------P-----------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------------C-----------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------------C-----------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 0 011 2345578888865 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHHh---ccCCCCeEEEEEecCcc----------------hH-hhcCEEEEEeCCEEEEecC
Q 005740 606 ---ESEHYVKGVLHALR---NDCKTKRTVIVIAHRLS----------------TI-KAVDRIVVIDDGRIIEVGN 657 (680)
Q Consensus 606 ---~tE~~I~~~l~~l~---~~~~~~~TvIvIaHRls----------------ti-~~aD~I~vl~~G~Ive~Gt 657 (680)
..++.+.+.++++. ++ .++|+|+++|-.. .+ ..||.++.+.++++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~--~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNN--SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 12234455555542 22 3789999999543 13 3599999999887765554
No 169
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.85 E-value=3.6e-10 Score=111.46 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=67.3
Q ss_pred eeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCC
Q 005740 456 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 535 (680)
Q Consensus 456 isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~ 535 (680)
+-=++++|+.++|+|+|||||||++++|.+.++ .+.+++||+++|.+ +|+.++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 344688899999999999999999999999985 48999999999986 6776652
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCC
Q 005740 536 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 599 (680)
Q Consensus 536 ~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEa 599 (680)
+...+.++.++++...+.+++.++.++. + .-.++.|.++ ..+++++|+|=+
T Consensus 68 -~~~~~~~~~~~~~~~~l~~~i~~~l~~~---~-~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 68 -NGFLQYDVLEALNMEKMMSAISCWMESA---R-HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp -TSCBCCSSGGGBCHHHHHHHHHHHHHHH---T-TSSCCC-------------CCCCEEEEECT
T ss_pred -cCCChhHHHHHhHHHHHHHHHHHHHhCC---C-CCCcCCCeee--------cCCCCEEEEeeh
Confidence 2333323334444445555554332211 0 1134555554 456788888543
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.80 E-value=1.4e-09 Score=126.17 Aligned_cols=75 Identities=23% Similarity=0.198 Sum_probs=66.8
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC--CCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHh
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 532 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p--~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~ 532 (680)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.|++++|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 467889999999999999999999999987765 78999 8999999999999999999999999999988888885
No 171
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=1.2e-11 Score=134.32 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=107.0
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhc------------CCCCCCceEEECCeeCCCCCH-HHhhccE---EEEccCCcC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDI-RWLREKI---GFVGQEPQL 522 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r------------~y~p~~G~I~idG~di~~~~~-~~LR~~I---~~V~Qd~~L 522 (680)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 778999999998853221100 0001122 255566655
Q ss_pred ccc-cHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCC--CeEEEeCC
Q 005740 523 LQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEA 599 (680)
Q Consensus 523 F~g-TI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p--~ILILDEa 599 (680)
..+ |..|++ . .+....++.+.+--++...-+ |+.+ ..+||+. || +|+++||+
T Consensus 96 ~~~~s~~e~L--------~-~~fl~~ir~~d~il~Vvd~~~--d~~i--~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL--------G-NAFLSHVRAVDAIYQVVRAFD--DAEI--IHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS--------C-HHHHHHHTTCSEEEEEEECCC--TTCS--SCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHH--------H-HHHHHHHHHHHHHHHHHhccc--ccee--eeecccc------------Ccchhhhhchhh
Confidence 432 111111 1 112222222111000000000 0111 1356653 99 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-hccCCCCeEEEEEecCcchHhh-cCEEE-EEeCC-EEEEecCh
Q 005740 600 TSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH 658 (680)
Q Consensus 600 TSaLD~~tE~~I~~~l~~l-~~~~~~~~TvIvIaHRlsti~~-aD~I~-vl~~G-~Ive~Gth 658 (680)
++.+|.++-++..+.+++. .+ .|+|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~---~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSR---GANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---SSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999988888888776 42 35664 3999988765 99999 99999 88866653
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.74 E-value=7.8e-11 Score=127.32 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=88.5
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
.+|+++|+++++|+.++|+||+|||||||+++|.+.+ +|++..-+ . +.+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 68776511 1 1123344588889987653 344
Q ss_pred HhcCCC--CCCCH-HHHHHHHHHhcHHHHHHc---------CCCCcccc-----cCC--CCCChHHHHHHHHHHHHccCC
Q 005740 531 IMYGCP--KDVKN-EDIEWAAKQAYVHEFILS---------LPCGYETL-----VDD--DLLSGGQKQRIAIARAILRDP 591 (680)
Q Consensus 531 I~~g~~--~~~s~-eei~~A~~~a~l~dfI~~---------LP~G~dT~-----vge--~~LSGGQrQRIaIARAll~~p 591 (680)
+..... .+... +.+. ....+.+.+.. -|+-.+.. +.+ ..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443311 01100 1110 12233344321 11111111 111 368999999999999999999
Q ss_pred CeEE-EeCCCC
Q 005740 592 AILL-LDEATS 601 (680)
Q Consensus 592 ~ILI-LDEaTS 601 (680)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999987
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.73 E-value=2.7e-09 Score=104.26 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=75.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC-----CCC------CceEEECCeeCC----CCC-HHHhhccEEEEccCCc--C--cc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY-----EPS------DGQIYIDGFPLT----DLD-IRWLREKIGFVGQEPQ--L--LQ 524 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y-----~p~------~G~I~idG~di~----~~~-~~~LR~~I~~V~Qd~~--L--F~ 524 (680)
+++|+|++|||||||++.|.+.. .|+ .|+|.+||.++. +.. .+..|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 679999997652 222 2233333322223321 1 11
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHhcHHHHHHc-CCCCccc-ccCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCC
Q 005740 525 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYET-LVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATS 601 (680)
Q Consensus 525 gTI~eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~-LP~G~dT-~vge~-~LSGGQrQRIaIARAll~~p~ILILDEaTS 601 (680)
.+-. .+.+++....+ .+.. .+.+.-. .++.+ .|..-.......||++.++|+++++| ||
T Consensus 87 ~~~~----------~s~~~~~~~~~------~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKH----------LTYENVERWLK------ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCH----------HHHHTHHHHHH------HHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCH----------HHHHHHHHHHH------HHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 1100 01111111111 1111 1111111 12332 33221122356699999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHH
Q 005740 602 ALDSESEHYVKGVLHAL 618 (680)
Q Consensus 602 aLD~~tE~~I~~~l~~l 618 (680)
|+|.+.-..+.+.|.+.
T Consensus 149 al~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999888888777553
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.68 E-value=6.6e-09 Score=111.66 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=37.3
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc--CCCCCCceEEECCee
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFP 500 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r--~y~p~~G~I~idG~d 500 (680)
.+|++++++++ .|++||++|||||||++.|.| +.++.+|.+.-.+..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~ 73 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceE
Confidence 58999999999 999999999999999999999 888888877655443
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.7e-09 Score=107.15 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=56.9
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCeeCCCCCHHHhhccEEEEccCCcCccccHHH
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 529 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I~----------idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~e 529 (680)
++|+.++|+|||||||||+++.|++.++| ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999986 333332 467777777888888765 5888888888888
Q ss_pred HHhcC
Q 005740 530 NIMYG 534 (680)
Q Consensus 530 NI~~g 534 (680)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 8 577
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.63 E-value=3.3e-09 Score=103.97 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=41.0
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 521 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~ 521 (680)
++|++|+.++|+|||||||||++++|.+++.|+.| +.+ +...++... ..+..+++++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHH
Confidence 46899999999999999999999999999988666 222 223333221 12234777777653
No 177
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.61 E-value=3.8e-09 Score=107.87 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=36.0
Q ss_pred cEEEEEE-EEEcCCCCCCCcccceeEEeeC---CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 434 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 434 ~I~f~nV-sF~Y~~~~~~~VL~~isl~I~~---Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++++|| +|+|.+ +.++|+|+||+|++ |++++|+|+|||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34799999999999 9999999999999999999999855
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.57 E-value=1.6e-09 Score=106.35 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE--EECCeeCC
Q 005740 438 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT 502 (680)
Q Consensus 438 ~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I--~idG~di~ 502 (680)
+|++..+. ...+.+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.+++
T Consensus 3 ~~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 35555443 2457888999999999999999999999999999999997 78998 99987664
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.57 E-value=3e-09 Score=120.31 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=64.0
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc-eE-EECCeeCCC-------CCH---HHhhccEEEEccCCcCccc
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QI-YIDGFPLTD-------LDI---RWLREKIGFVGQEPQLLQM 525 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G-~I-~idG~di~~-------~~~---~~LR~~I~~V~Qd~~LF~g 525 (680)
..+++|+.++|+|+||||||||+++|++.+.|++| +| ++||.++.+ ++. ..+++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999997 78 499987643 222 23456789999872
Q ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHhc
Q 005740 526 DIKSNIMYGCP---KDVKNEDIEWAAKQAY 552 (680)
Q Consensus 526 TI~eNI~~g~~---~~~s~eei~~A~~~a~ 552 (680)
+..+|+.+... .....+++.++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 45566665421 0122345556666544
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.56 E-value=1.3e-08 Score=109.57 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=84.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC-----------CCCceEEECCeeCCCCCHHHhhccEEEEccCCcC----ccccHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL----LQMDIKS 529 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~-----------p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~L----F~gTI~e 529 (680)
+++|||++|||||||++.|.+... |+.|.|.++|.++. +....|++.|.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999875 77899999997653 33456666654331 33232 2
Q ss_pred HHhcCC----CCCCCHHH--HHHHHHHhcHHHHHHcCC-CCcc-cccCCC--CCChHHHHHHHHH----HHH-ccCCCeE
Q 005740 530 NIMYGC----PKDVKNED--IEWAAKQAYVHEFILSLP-CGYE-TLVDDD--LLSGGQKQRIAIA----RAI-LRDPAIL 594 (680)
Q Consensus 530 NI~~g~----~~~~s~ee--i~~A~~~a~l~dfI~~LP-~G~d-T~vge~--~LSGGQrQRIaIA----RAl-l~~p~IL 594 (680)
.+...+ --|+++.+ ..+..+ ...+.+..+. .+.- -.|+.+ .+|+|++||+.++ |++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222110 01233221 211111 1122222221 1111 112332 5788899988887 776 555555
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh
Q 005740 595 LLDEATSALDSESEHYVKGVLHALR 619 (680)
Q Consensus 595 ILDEaTSaLD~~tE~~I~~~l~~l~ 619 (680)
++|||+|.+.-..+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999888888887654
No 181
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.54 E-value=8.7e-09 Score=99.18 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=48.8
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCe--eCCCCCH----HHhhccEEEEccCC
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLDI----RWLREKIGFVGQEP 520 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~--di~~~~~----~~LR~~I~~V~Qd~ 520 (680)
+++++++.+| .++|+||||||||||++.|.++..+..|...-.+. ++-.... ...+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988888776533331 1111110 12456799999985
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.50 E-value=1.1e-08 Score=100.35 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=43.8
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccEEEEccCCcC
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKIGFVGQEPQL 522 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I~~V~Qd~~L 522 (680)
.++-++|+.++|+|+|||||||++++|.+.+ |.+.+||.++.. .... +..+++++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCccc
Confidence 4667899999999999999999999999988 999999988753 2222 2346777776543
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=4.5e-08 Score=95.90 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=25.1
Q ss_pred EcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 443 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 443 ~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+|+.++..+.++||||++++|+.++|+|+|||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666678999999999999999999999999999999999877
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=2.1e-07 Score=103.43 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=78.0
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
..++++++++++| +.|+||+|+|||||++.+.+-.. ..+-.+ +..+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------------------~~f~~i---------s~~~- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------------------VPFFHI---------SGSD- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------------------CCEEEE---------EGGG-
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------------------CCeeeC---------CHHH-
Confidence 4688888888888 89999999999999999998321 001111 1000
Q ss_pred HhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCC----------
Q 005740 531 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT---------- 600 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaT---------- 600 (680)
++.. .+| .|++++|-.+++|...+|.||++||+.
T Consensus 85 -------------------------~~~~-------~~g----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 85 -------------------------FVEL-------FVG----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -------------------------TTTC-------CTT----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -------------------------HHHH-------Hhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 0000 112 278899999999999999999999993
Q ss_pred CCCCHHHHHHHHHHHHHHhc-cCCCCeEEEEEecCcchH
Q 005740 601 SALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 601 SaLD~~tE~~I~~~l~~l~~-~~~~~~TvIvIaHRlsti 638 (680)
++.|.+.++.+.+.+..+.. ....+..+|..|||...+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 46677777666666655421 001356889999998654
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=2.9e-08 Score=105.00 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=57.3
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCH----HHh-----hccEEEE-ccCC
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL-----REKIGFV-GQEP 520 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~----~~L-----R~~I~~V-~Qd~ 520 (680)
+++++||++++|++++++|++|+||||++..|++.+.+..|+|++.+.|+..... ..| +..+.++ +|+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4578899999999999999999999999999999999999999999988865431 344 6678888 6653
No 186
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.44 E-value=2.3e-08 Score=106.90 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=51.3
Q ss_pred cccccEEEEEEEEEcCCCCCCCccc--------------ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 430 RLMGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 430 ~~~g~I~f~nVsF~Y~~~~~~~VL~--------------~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
..++.|+|+||+|.||. ++.+|+ |+++.|.+|++++|||+||+|||||+++|.|+.
T Consensus 129 ~~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34688999999999996 357899 999999999999999999999999999999986
No 187
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.44 E-value=3.3e-09 Score=118.62 Aligned_cols=139 Identities=16% Similarity=0.157 Sum_probs=95.6
Q ss_pred EEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEE
Q 005740 437 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516 (680)
Q Consensus 437 f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V 516 (680)
++++...|.. ..+++++++++++| +.|+||+|+|||||++.|.+... .|.|.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 3444444532 35899999999999 99999999999999999999875 78999999988776556666777788
Q ss_pred ccCCc-Cc-cccHHHHH-hcCCCCC----CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHcc
Q 005740 517 GQEPQ-LL-QMDIKSNI-MYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 589 (680)
Q Consensus 517 ~Qd~~-LF-~gTI~eNI-~~g~~~~----~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~ 589 (680)
+|+.. .+ .-.+.|+| .++.... ...++..+.+ ..++. .|||||+|+..|++|...
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~-------------~Ldg~~~~~~viviAatn 177 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAATN 177 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH-------------HGGGCCSSCCCEEEECCS
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH-------------HhcccccCccEEEEEecC
Confidence 88864 23 23456777 4442111 1123322222 12222 257778888888888888
Q ss_pred CCCeEEEeCCCCC
Q 005740 590 DPAILLLDEATSA 602 (680)
Q Consensus 590 ~p~ILILDEaTSa 602 (680)
+|++ ||||.-.
T Consensus 178 ~p~~--LD~aLlr 188 (499)
T 2dhr_A 178 RPDI--LDPALLR 188 (499)
T ss_dssp CGGG--SCTTTSS
T ss_pred Chhh--cCccccc
Confidence 8877 7877653
No 188
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.33 E-value=2.2e-06 Score=91.68 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=45.7
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE-EECCeeCCCCCHHHhhccEEEEccCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEP 520 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-~idG~di~~~~~~~LR~~I~~V~Qd~ 520 (680)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 489999999999999999999999999988888865 77764332 2 23556677776653
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.29 E-value=1.9e-08 Score=101.11 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=50.7
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC------CHHH----hhccEEEEccCCcCcc
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRW----LREKIGFVGQEPQLLQ 524 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~------~~~~----LR~~I~~V~Qd~~LF~ 524 (680)
+.+.++|+.++|+|++||||||++++|.++ .|+|.++|.|...+ .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445689999999999999999999999998 79999999876432 1211 2467899999877654
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.27 E-value=2e-07 Score=91.46 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=70.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 544 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei 544 (680)
.++|+|++||||||+.++|.++ |...+|+- .+.+.+. + + . .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d--------~~~~~~~---~-----------------~-~--~~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD--------VVAREVV---A-----------------K-D--SPLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH--------HHHHHTT---C-----------------S-S--CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH--------HHHHHHc---c-----------------C-C--hHHH
Confidence 6899999999999999999983 65556542 2211110 0 0 0 0111
Q ss_pred HHHHHHhcHHHHHHcCCCCcccccCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCC
Q 005740 545 EWAAKQAYVHEFILSLPCGYETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 623 (680)
Q Consensus 545 ~~A~~~a~l~dfI~~LP~G~dT~vge~-~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~ 623 (680)
.+. ...+ |+. -.+.|+.+|-.+++.+..+|..+-.+| +.+++.-.+.+.+.+...
T Consensus 48 ~~i---------~~~~--------g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~--~~~~p~v~~~~~~~~~~~----- 103 (206)
T 1jjv_A 48 SKI---------VEHF--------GAQILTEQGELNRAALRERVFNHDEDKLWLN--NLLHPAIRERMKQKLAEQ----- 103 (206)
T ss_dssp HHH---------HHHH--------CTTCC------CHHHHHHHHHTCHHHHHHHH--HHHHHHHHHHHHHHHHTC-----
T ss_pred HHH---------HHHh--------CHHHhccCccccHHHHHHHHhCCHHHHHHHH--hccCHHHHHHHHHHHHhc-----
Confidence 111 1111 222 246899999999999998886543332 234555444444434322
Q ss_pred CCeEEEEEecCcchH---hhcCEEEEEeC
Q 005740 624 TKRTVIVIAHRLSTI---KAVDRIVVIDD 649 (680)
Q Consensus 624 ~~~TvIvIaHRlsti---~~aD~I~vl~~ 649 (680)
.+.++|+-+|-+... +.||.+++++-
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 245788888877553 67999999963
No 191
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.26 E-value=5.5e-08 Score=94.80 Aligned_cols=82 Identities=23% Similarity=0.164 Sum_probs=49.2
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC-CCC-H--HHhhccEEEEccCCcCccccHHHHHhcCCCCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLD-I--RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 538 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~-~~~-~--~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 538 (680)
...++|+|++||||||+.++|.+. |-..+|.-++. +.. - +.+++.+ |+.+. +|++ ||..++. ..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~-~~ 75 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALAR-LV 75 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHH-HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHH-HH
Confidence 357999999999999999999996 77778764431 110 0 2333332 55444 6777 5655542 22
Q ss_pred CCHHHHHHHHHHhcHHHHH
Q 005740 539 VKNEDIEWAAKQAYVHEFI 557 (680)
Q Consensus 539 ~s~eei~~A~~~a~l~dfI 557 (680)
.++++....++ ...|.++
T Consensus 76 ~~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 76 FSDPERLKALE-AVVHPEV 93 (203)
T ss_dssp TTSHHHHHHHH-HHHHHHH
T ss_pred hCCHHHHHHHH-HHhChHH
Confidence 34455555554 2344444
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.22 E-value=3.3e-07 Score=97.02 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=80.5
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcC-CCC------CCceEEECCeeCCCCCHHHhhcc---EEEEccCCcCccccHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRL-YEP------SDGQIYIDGFPLTDLDIRWLREK---IGFVGQEPQLLQMDIK 528 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~-y~p------~~G~I~idG~di~~~~~~~LR~~---I~~V~Qd~~LF~gTI~ 528 (680)
-+++|+.+.|.|++|||||||+.-++.- ..| ..+.++++...- ++.+.+++. +++-++ .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~-------~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDID-------NVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHH-------HHh
Confidence 5899999999999999999999877754 344 334455554321 223333221 111000 011
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCCh-HHHHHHHHHHHHc---cCCCeEEEeCCCCCCC
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQRIAIARAIL---RDPAILLLDEATSALD 604 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSG-GQrQRIaIARAll---~~p~ILILDEaTSaLD 604 (680)
+|+.+.. ..++ -+.|.+..+++++ .+++++|+|+.|+-.+
T Consensus 174 ~~l~~~~------------------------------------~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 174 NNIYYIR------------------------------------AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HTEEEEE------------------------------------CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred ccEEEEe------------------------------------CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 2222210 1122 2345677788887 5799999999998765
Q ss_pred HH-------HH--HHHHHH---HHHHhccCCCCeEEEEEecCcch----------------H-hhcCEEEEEeC
Q 005740 605 SE-------SE--HYVKGV---LHALRNDCKTKRTVIVIAHRLST----------------I-KAVDRIVVIDD 649 (680)
Q Consensus 605 ~~-------tE--~~I~~~---l~~l~~~~~~~~TvIvIaHRlst----------------i-~~aD~I~vl~~ 649 (680)
.+ ++ +.+.+. |.++.++ .+.|+|++.|-... + ..||.++.+++
T Consensus 218 ~~~~~~g~~~~r~~~~~~~l~~L~~la~~--~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 218 AEYPGRENLAVRQQKLNKHLHQLTRLAEV--YDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHSCTTTSHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEEC------------------------CEEEEEEE
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHHHHHH--hCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 42 12 234444 4443332 36899999885432 1 24788888864
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.18 E-value=1.6e-06 Score=102.28 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHhccCCCCeEEEE-EecCcchHh
Q 005740 572 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIK 639 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~l~~l~~~~~~~~TvIv-IaHRlsti~ 639 (680)
-+|+|+.||..++++++.+++++|+|||.. .||.+.-..+.+.+.+... ..+++++ .||....+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccHHHHH
Confidence 478999999999999999999999999997 8998776666665555432 3467766 488776554
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.10 E-value=1.5e-06 Score=92.36 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=69.3
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHH
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI 531 (680)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-.-...+. +.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-------------
Confidence 567766679999999999999999999988777654322222 333221
Q ss_pred hcCCCCCCCHHHHHHH----HHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 005740 532 MYGCPKDVKNEDIEWA----AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 604 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A----~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 604 (680)
+.+.+++..- .....++.... +.||++++||++.|...+.++++.|.|+|+.++|
T Consensus 83 ------Ems~~ql~~Rlls~~~~v~~~~l~~------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSDLTSINMHDLES------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHHHHCCCHHHHHH------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHHhhCCCHHHHhc------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 2344444332 12222222221 2689999999999999999999999999876544
No 195
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.09 E-value=3.7e-06 Score=90.12 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEe--cCcc
Q 005740 572 LLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLS 636 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll~~p~ILILD-EaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIa--HRls 636 (680)
.+|+|++|++. |.+...++-++++| ++++++|.+....+.+.+.+.. .++.+|+|. |.+.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccC
Confidence 57999999887 66667788899999 9999999998887777776652 257888888 6664
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.07 E-value=6.9e-06 Score=89.86 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=98.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHH-hhccE
Q 005740 435 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 513 (680)
Q Consensus 435 I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~-LR~~I 513 (680)
+..++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+..-...+ |+..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3445566677532 1 678888 89999999999999999999999999999999999988876543322 2210
Q ss_pred EEEccCCcCccccHHHHHhc-CCCCCCCHHHHHHHHHHhcHHHHHHcC-CCCcccccCC--CCC---ChHHHHHHHHHHH
Q 005740 514 GFVGQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSL-PCGYETLVDD--DLL---SGGQKQRIAIARA 586 (680)
Q Consensus 514 ~~V~Qd~~LF~gTI~eNI~~-g~~~~~s~eei~~A~~~a~l~dfI~~L-P~G~dT~vge--~~L---SGGQrQRIaIARA 586 (680)
+ =+.|+-+ ...+..+..++. .+.+..+ .++||..+=+ ..+ ..-..+..+++|+
T Consensus 149 ~------------~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 G------------EKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp H------------HHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred c------------ccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 0 0112211 101123334442 1223333 3678877643 233 2346677788999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 005740 587 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633 (680)
Q Consensus 587 ll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH 633 (680)
+..++-+|++|- +++.|..... +.+..- -+.+-+++++
T Consensus 209 ~~pd~vlLVvDa-~tgq~av~~a---~~f~~~-----l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLDA-MTGQEALSVA---RAFDEK-----VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEEG-GGTTHHHHHH---HHHHHH-----TCCCEEEEES
T ss_pred cCCceEEEEEec-cchHHHHHHH---HHHHhc-----CCceEEEEeC
Confidence 877777888884 5555554321 223221 1357777775
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.06 E-value=6.7e-07 Score=85.24 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=34.2
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 502 (680)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 469999999999999999999999876 89999987765
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.04 E-value=8.9e-07 Score=86.86 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=42.3
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 507 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~ 507 (680)
..++|+.++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3578999999999999999999999999999999998887776555543
No 199
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.03 E-value=1.3e-06 Score=89.50 Aligned_cols=59 Identities=29% Similarity=0.342 Sum_probs=48.9
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEEEe
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 648 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~vl~ 648 (680)
|++|||||..+|++++||||| |+++...+ ++... .|+|+++++|..+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~----~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAE----TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHH----TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHc----cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 98885543 43332 3789999999999888899886664
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=1.4e-06 Score=91.98 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=74.2
Q ss_pred CcccceeEEeeCCc------EEEEeCCCCCcHHHHHHHHhcCCC--CCCceEEECCeeCCCCCHHHhhccEEEEccCCcC
Q 005740 451 PILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 522 (680)
Q Consensus 451 ~VL~~isl~I~~Ge------~vAIVG~SGsGKSTL~~LL~r~y~--p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~L 522 (680)
+.|++++..+.+++ .+||+|||||||||++++|.++++ |++|+ +++++||.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 46777777777766 899999999999999999999988 34444 5556666665
Q ss_pred ccccHHHHH----hcCCCCCC-CHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 523 LQMDIKSNI----MYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 523 F~gTI~eNI----~~g~~~~~-s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
+.....+.. .+|. |+. +.+.. .+++..+..|-++..- -..|-+..+|+.-+...+..|+|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~-P~~~D~~~l---------~~~L~~L~~g~~~v~~-P~yd~~~~~r~~~~~~~v~~~dIVIvE 203 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGF-PESYDMPSL---------LRVLNAIKSGQRNVRI-PVYSHHYYDIVRGQYEIVDQPDIVILE 203 (321)
T ss_dssp CCHHHHHHTTCGGGTTS-GGGBCHHHH---------HHHHHHHHTTCSSEEE-EEEETTTTEEEEEEEEEECSCSEEEEE
T ss_pred cchhhhhhHHHHhhccC-cccccHHHH---------HHHHHhhhcccccccc-chhhhhccccccCceeeccCCCEEEEE
Confidence 544433332 1342 222 22222 2344444445411100 012222233433334556789999999
Q ss_pred CCCCCCCH
Q 005740 598 EATSALDS 605 (680)
Q Consensus 598 EaTSaLD~ 605 (680)
.+-.-.|.
T Consensus 204 Gi~lL~~~ 211 (321)
T 3tqc_A 204 GLNILQTG 211 (321)
T ss_dssp CTTTTCCC
T ss_pred cccccccc
Confidence 98776554
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.88 E-value=1.1e-06 Score=84.21 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=34.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc--eEEECCeeCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLT 502 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~ 502 (680)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 7777875554
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.87 E-value=4e-06 Score=89.42 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=25.7
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
-+++|+.+.|.||+|||||||+.-++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999888774
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.87 E-value=3.1e-05 Score=84.77 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 502 (680)
++..++++|++||||||++.-|++.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999999777753
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.85 E-value=5.7e-05 Score=80.71 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=26.2
Q ss_pred CCc--EEEEeCCCCCcHHHHHHHHhcCCCCCC
Q 005740 462 ANE--VVAIVGLSGSGKSTFVNLLLRLYEPSD 491 (680)
Q Consensus 462 ~Ge--~vAIVG~SGsGKSTL~~LL~r~y~p~~ 491 (680)
+|. .+.|.||+|+||||+++.+.+...+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 446 899999999999999999999887653
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=2.9e-05 Score=80.36 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH------H----HHHHHHHHHhccC-CCCeEEEEEecCcch-----
Q 005740 574 SGGQKQRIAIARAILRDPAILLLDEATSALDSESE------H----YVKGVLHALRNDC-KTKRTVIVIAHRLST----- 637 (680)
Q Consensus 574 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~tE------~----~I~~~l~~l~~~~-~~~~TvIvIaHRlst----- 637 (680)
++++++|-.+++|...+|.+|++||+.+-++.... . .+...++...... ..+..+|..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 46788888889998899999999999887664321 1 2233333321100 012456677887643
Q ss_pred HhhcCEEEEEe
Q 005740 638 IKAVDRIVVID 648 (680)
Q Consensus 638 i~~aD~I~vl~ 648 (680)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34678776664
No 206
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.77 E-value=1.4e-06 Score=87.86 Aligned_cols=70 Identities=27% Similarity=0.222 Sum_probs=51.6
Q ss_pred CcEEEEeCCCCCcHHHHHHHHh---cCCCCCCceE--------EECCeeCCCCC-HHHhhccEEEEc------cCCcCcc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI--------YIDGFPLTDLD-IRWLREKIGFVG------QEPQLLQ 524 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~---r~y~p~~G~I--------~idG~di~~~~-~~~LR~~I~~V~------Qd~~LF~ 524 (680)
.-.++|+|||||||||+++.|. |+.-.+.|.+ .-+|+++.+.. ...+.+.+.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 5555667776 34577776643 556667777776 5666777
Q ss_pred ccHHHHHh
Q 005740 525 MDIKSNIM 532 (680)
Q Consensus 525 gTI~eNI~ 532 (680)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 77766654
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.77 E-value=2.5e-05 Score=86.14 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=44.9
Q ss_pred CCCeEEEeCCCCCCCH-HHHHHHHHHHHHHhccCCCCeEEEEEecCc-chHhh-cCEEEE-EeCCEEEEecCh
Q 005740 590 DPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKA-VDRIVV-IDDGRIIEVGNH 658 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~-~tE~~I~~~l~~l~~~~~~~~TvIvIaHRl-sti~~-aD~I~v-l~~G~Ive~Gth 658 (680)
+|++|++||+..-.+. .++..+...++.+.+ .++++|+.+|+. ..+.. .+++.- ++.|.+++.+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 8999999999887764 677778888877653 468899999984 32221 222222 456777766654
No 208
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.74 E-value=1.9e-05 Score=82.48 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCH
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 541 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~ 541 (680)
++.++||||++|+|||||++.|.|.- +.+.. .......++..+++.|+..-+ .+-+.|....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~i--------~~iDTpG~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQA--------IYVDTPGLHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEEE--------EEESSSSCCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCeeE--------EEEECcCCCc
Confidence 34489999999999999999999863 22211 111112245568888765311 1111112221
Q ss_pred HHHHHHHHHhcHHHHHHcCCCCc---cccc---CCCCCChHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHH
Q 005740 542 EDIEWAAKQAYVHEFILSLPCGY---ETLV---DDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHYVK 612 (680)
Q Consensus 542 eei~~A~~~a~l~dfI~~LP~G~---dT~v---ge~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaLD~~t-E~~I~ 612 (680)
+-..... .++.......+ |..+ ....+|+|++ .+++++. +.|.|+++ +-+|... ...+.
T Consensus 69 -~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 -EEKRAIN----RLMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp -HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred -cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 1111111 12222222222 2211 1224899886 5677776 67889998 5778766 55566
Q ss_pred HHHHHHhccCCCCeEEEEEecCcchHh
Q 005740 613 GVLHALRNDCKTKRTVIVIAHRLSTIK 639 (680)
Q Consensus 613 ~~l~~l~~~~~~~~TvIvIaHRlsti~ 639 (680)
+.+.++.+.+....++.+.||.-.-+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 667766543111245666677655443
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.74 E-value=6.9e-06 Score=97.27 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=29.2
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
|.+++|+.+.|+||||||||||++.|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 47899999999999999999999999998743
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.71 E-value=5.5e-06 Score=93.77 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=50.4
Q ss_pred EEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEE
Q 005740 437 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 516 (680)
Q Consensus 437 f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V 516 (680)
.++|..+|.. ..+++++++++ +|+.+.|+||||+|||||++.|.+...+..|+|.++|..-..--....++.+|.+
T Consensus 86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 4556556632 34788999998 8999999999999999999999999999999999988543222223334556666
Q ss_pred ccC
Q 005740 517 GQE 519 (680)
Q Consensus 517 ~Qd 519 (680)
+|.
T Consensus 162 ~~~ 164 (543)
T 3m6a_A 162 PGR 164 (543)
T ss_dssp --C
T ss_pred chH
Confidence 654
No 211
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.71 E-value=8.1e-06 Score=79.40 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc----CC----CCCCceEEECCeeC
Q 005740 441 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY----EPSDGQIYIDGFPL 501 (680)
Q Consensus 441 sF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r----~y----~p~~G~I~idG~di 501 (680)
+|+||+- .++++++|++.+++ +++++|++|+|||||++.+.+ -| .++.+.+.++|.++
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 5678753 46999999998887 589999999999999999986 23 33556777777544
No 212
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.67 E-value=1.8e-05 Score=87.07 Aligned_cols=71 Identities=30% Similarity=0.344 Sum_probs=46.6
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC------------CCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccc-cHHHH
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSN 530 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y------------~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~g-TI~eN 530 (680)
-++||||+||+|||||++.|.|.. +|.+|.+.++|.++.-+|...+|+..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999985 37889999999988777777777777777777666643 33456
Q ss_pred HhcC
Q 005740 531 IMYG 534 (680)
Q Consensus 531 I~~g 534 (680)
+..+
T Consensus 261 i~~a 264 (439)
T 1mky_A 261 IEKA 264 (439)
T ss_dssp HHHC
T ss_pred HhhC
Confidence 5543
No 213
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.66 E-value=0.00022 Score=71.31 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 492 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G 492 (680)
+++|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987766555
No 214
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.65 E-value=1.7e-05 Score=84.34 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=27.3
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 492 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G 492 (680)
+++..+.|.||+|+|||||++.+.+...+..|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999998765443
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.64 E-value=5.7e-06 Score=81.56 Aligned_cols=44 Identities=27% Similarity=0.263 Sum_probs=38.9
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc--eEEECCeeC
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 501 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di 501 (680)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45778999999999999999999999999998889 899986443
No 216
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.62 E-value=2e-05 Score=74.61 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.6
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 498 (680)
.|+.++|+|+|||||||++++|.+.+.+ +++|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56765
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.61 E-value=0.00024 Score=71.87 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=29.6
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
.++++++..++| +.|+||+|+||||+++.+.+.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 455566666655 9999999999999999999876422 34555433
No 218
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.59 E-value=6.4e-05 Score=78.91 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.6
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 490 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~ 490 (680)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999876543
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=8.5e-06 Score=79.87 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=45.4
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCC-CCceE----------EECCeeCCCCCHHHhhccEEEEccCCcCccccH
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQI----------YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 527 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p-~~G~I----------~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI 527 (680)
...+|..++|+|||||||||+++.|...++. ..+.| .+||.+..-++.+.+++.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 3568999999999999999999999987742 11111 2366666666777766543 34555554444
Q ss_pred HHH
Q 005740 528 KSN 530 (680)
Q Consensus 528 ~eN 530 (680)
.+|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 444
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.59 E-value=1.6e-05 Score=79.83 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=32.9
Q ss_pred ccceeEEee---CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 453 LNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 453 L~~isl~I~---~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
|.++|++++ +|..++|.|++||||||++++|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 8999999999999999999999999988 7777654
No 221
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.59 E-value=8.3e-06 Score=86.84 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=47.4
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 503 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~ 503 (680)
.+++++++++++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 48899999999999999999999999999999999998888888887776643
No 222
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.53 E-value=3.5e-06 Score=81.83 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=41.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhc------CCCCCCceEEECCe--eCCCCCH--------HHhhccEEEEccCCcCccccHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR------LYEPSDGQIYIDGF--PLTDLDI--------RWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r------~y~p~~G~I~idG~--di~~~~~--------~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
.++|+|++||||||++++|.+ +.+|..|...++.. +-...+. +.+++....+.|+..++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 44555554332211 1000110 0123334566777889999999
Q ss_pred HHHhcC
Q 005740 529 SNIMYG 534 (680)
Q Consensus 529 eNI~~g 534 (680)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 998874
No 223
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.53 E-value=0.00019 Score=79.14 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=101.2
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc--eEEECCeeCCCCCHHHhhccEEEEccCCcCccccHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 528 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G--~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~ 528 (680)
+-|+.+.--+++|+.+.|.|++|+||||++.-++.-.....| .++++. +.+.+++.+++- .+...+-..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~--~~~~~i~~~--- 258 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMM--CSEARIDMN--- 258 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHH--HHHTTCCTT---
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHH--HHHcCCCHH---
Confidence 357777656999999999999999999998877765543223 333333 455555554421 011000000
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhcHHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCH
Q 005740 529 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS 605 (680)
Q Consensus 529 eNI~~g~~~~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge-~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaLD~ 605 (680)
.++-| ..++++.....+.+ +.+...| -.+-+ ..+|..| ..+.+|.+. .+++++|+|..+.-.+.
T Consensus 259 -~l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 259 -RVRLG---QLTDRDFSRLVDVA---SRLSEAP----IYIDDTPDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp -TCCGG---GCCHHHHHHHHHHH---HHHHTSC----EEEECCTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred -HHhCC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 11112 35666655544433 2333322 12222 3566655 356677776 47999999998865543
Q ss_pred ------HH-H---HHHHHHHHHHhccCCCCeEEEEEec--C-----------cch-------HhhcCEEEEEe
Q 005740 606 ------ES-E---HYVKGVLHALRNDCKTKRTVIVIAH--R-----------LST-------IKAVDRIVVID 648 (680)
Q Consensus 606 ------~t-E---~~I~~~l~~l~~~~~~~~TvIvIaH--R-----------lst-------i~~aD~I~vl~ 648 (680)
++ . ..+.+.|+++.++ .+.++|+++| | ++. -..||.|+.|.
T Consensus 326 ~~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 11 1 3455566666543 3689999998 1 121 23699999995
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.52 E-value=6.8e-05 Score=75.10 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=68.3
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCc-cccHHHHHhcCCCCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD 538 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~ 538 (680)
+..|+.+.++|||||||||++.+.+.-.....|. ...++++.|.|... .-++.+|+.-.....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999887664221111111 23466777777644 446777775321111
Q ss_pred CCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC---------CCChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHH
Q 005740 539 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD---------LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESE 608 (680)
Q Consensus 539 ~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~---------~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~tE 608 (680)
.. ..-|+....... --+.|+-.+. .++-+++-+++|+|||-. ++|....
T Consensus 137 ~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 137 PG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp TT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred cC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHH
Confidence 10 011221111000 1244665555 344689999999999976 4776665
Q ss_pred HHHHHHHHH
Q 005740 609 HYVKGVLHA 617 (680)
Q Consensus 609 ~~I~~~l~~ 617 (680)
....+.+.+
T Consensus 196 ~~~l~~i~~ 204 (235)
T 3llm_A 196 LVVLRDVVQ 204 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 434444433
No 225
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.46 E-value=2.1e-05 Score=82.70 Aligned_cols=104 Identities=10% Similarity=0.124 Sum_probs=64.7
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHH
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 530 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eN 530 (680)
+.|+++.--+++|+.+.|.|++|+||||++.-++.-.-- .| ..+.|++=
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSL------------ 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEES------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEEC------------
Confidence 467777766999999999999999999998777642210 01 12333321
Q ss_pred HhcCCCCCCCHHHHHHHHHH----hcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 005740 531 IMYGCPKDVKNEDIEWAAKQ----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 602 (680)
Q Consensus 531 I~~g~~~~~s~eei~~A~~~----a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILDEaTSa 602 (680)
+.+.+++..-+.. ..+.++. .|- ..||++|+||++.|-..+.++++.+.|+|+..
T Consensus 105 -------E~s~~~l~~R~~~~~~~i~~~~l~----~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -------EMGKKENIKRLIVTAGSINAQKIK----AAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -------SSCHHHHHHHHHHHHTTCCHHHHH----SCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -------CCCHHHHHHHHHHHHcCCCHHHHh----cCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 2344444332211 1222211 110 12788888888888888888888888887644
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.44 E-value=6.9e-05 Score=72.15 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=29.1
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc----CCCC----CCceEEECCeeC
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP----SDGQIYIDGFPL 501 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r----~y~p----~~G~I~idG~di 501 (680)
.+++++|++.++. +++++|++|+|||||++.+.+ -|.| +.+.+.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 3789999998877 889999999999999999987 3333 345666666433
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.41 E-value=3.4e-05 Score=82.35 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=37.8
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
+++.+++|+|++|||||||++.|.+.+.|++|+|.+.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45789999999999999999999999999999999988876543
No 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.35 E-value=0.00011 Score=69.67 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 229
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00074 Score=72.15 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=32.9
Q ss_pred CcccceeEE---eeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECC
Q 005740 451 PILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDG 498 (680)
Q Consensus 451 ~VL~~isl~---I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG 498 (680)
+-|+.+ +. +++|+.+.|.|++|+|||||+.-++.-.... ..-+++|.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 356665 33 8999999999999999999987766543222 23445554
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.28 E-value=0.00053 Score=70.20 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.7
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++++..+.|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667789999999999999999998864
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.27 E-value=0.00013 Score=72.14 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.4
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
++..+.|+||+|+||||+++.+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 232
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.26 E-value=0.00042 Score=72.10 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=28.0
Q ss_pred eEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 457 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 457 sl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
++.++++..+.|.||+|+||||+++.+.+...
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34578899999999999999999999998763
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.18 E-value=5e-05 Score=79.26 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=49.8
Q ss_pred EEEEEEEcCCCCCCCcccc-eeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCC
Q 005740 437 FVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 504 (680)
Q Consensus 437 f~nVsF~Y~~~~~~~VL~~-isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~ 504 (680)
.+++...|.+. . ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 77 ~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 77 YDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 34455556432 1 45 788876 999999999999999999999999999999999988887643
No 234
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=1.6e-05 Score=84.16 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=53.1
Q ss_pred CcccceeEEeeCCcE--EEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCC-CCHHHhhccEEEEcc
Q 005740 451 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLREKIGFVGQ 518 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~--vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~-~~~~~LR~~I~~V~Q 518 (680)
.+++.++..++.|+. +.+.||+|+||||+++.+++...+..|.+.+.+.+..+ .+.+.+|+.+..++|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 589999999999998 99999999999999999999988777765555555443 345666665554443
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00018 Score=69.19 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.9
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.00039 Score=67.44 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.5
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPS 490 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~ 490 (680)
..+.|.||+|+|||||++.+.+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999866543
No 237
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.00012 Score=74.21 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.7
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 502 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~ 502 (680)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456788999999999999999999999875 367888885543
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=4.6e-05 Score=81.78 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=37.1
Q ss_pred ccccEEEEEEEEEcCCCCCCCcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 005740 431 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498 (680)
Q Consensus 431 ~~g~I~f~nVsF~Y~~~~~~~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 498 (680)
..+.|.|+|++..|.. +.++++++|+| +|||++|+|||||++.|.+.-.+..|.+..++
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3567999999988853 35899999977 99999999999999999887666666554444
No 239
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.07 E-value=0.00057 Score=75.47 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeC-CCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHh
Q 005740 575 GGQKQRIAIARAILRDPAILLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 639 (680)
Q Consensus 575 GGQrQRIaIARAll~~p~ILILDE-aTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~ 639 (680)
+.|++-...++..+++++++|+.. ++..+....+ .+.+.+++ .++.+|+|.++.....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~------~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR------TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT------CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH------cCCCEEEEEECccchh
Confidence 458888889999999999877763 4455555544 44444432 3688999998887653
No 240
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.00014 Score=70.70 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=28.2
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
...++|+|++||||||+++.|.+.+ |...+|+-+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999998876 556666543
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00016 Score=69.33 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=34.0
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE-EECC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 498 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-~idG 498 (680)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345799999999999999999999999998877776 4554
No 242
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00014 Score=76.80 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.8
Q ss_pred CcccceeEEeeCC--cEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 451 PILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 451 ~VL~~isl~I~~G--e~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4666666666666 4599999999999999999998764
No 243
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.96 E-value=0.00079 Score=69.66 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=27.1
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCCCce
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~ 493 (680)
...+.|+||+|+||||+++.+.+...+.+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 3579999999999999999999988776664
No 244
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.96 E-value=0.00064 Score=63.54 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.2
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
-+++|+|++|+|||||++.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998643
No 245
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.94 E-value=0.00047 Score=64.21 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.5
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHh
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~ 484 (680)
++.++++.+| ..+|+||+||||||++..|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455566655 89999999999999999986
No 246
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.94 E-value=0.00022 Score=74.87 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.5
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
-+++|+.+.|.|++||||||++.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
No 247
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.002 Score=60.72 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.2
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 497 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~id 497 (680)
..+.|+|++||||||+++.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999972 12555554
No 248
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.91 E-value=0.00017 Score=70.79 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=31.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH
Q 005740 589 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 638 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti 638 (680)
.+|.+|++||+-. +|.+....+.+.+++. ..+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC----CCceEEEEEeCChHhC
Confidence 4578999999876 6777766666665442 3456788888876543
No 249
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.87 E-value=0.00044 Score=74.76 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=35.1
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcC-----------CCCCCceEEECCe
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 499 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~-----------y~p~~G~I~idG~ 499 (680)
.++.|.+++|||++|+|||||++.|.+. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4678899999999999999999999998 7899999988764
No 250
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.87 E-value=0.0009 Score=71.06 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=31.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 500 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~d 500 (680)
.+|..+.|.||+|+||||+++.+.+........+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999998876544555555544
No 251
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.00049 Score=65.29 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
-+++++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999984
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.84 E-value=0.00037 Score=66.84 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=30.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCCCC---CceEEECCeeC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPL 501 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~p~---~G~I~idG~di 501 (680)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 3679999999999999999999876543 47888887653
No 253
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.78 E-value=0.00095 Score=67.38 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHc---cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 574 SGGQKQRIAIARAIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 574 SGGQrQRIaIARAll---~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
+.||+.+-.+.|++. ++++++|+--..+.++.. +..+.+.+.+.......++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 444666667778774 888877665333355544 445555565543211125799999997654
No 254
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.73 E-value=0.00069 Score=65.72 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.72 E-value=0.00072 Score=64.37 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPS 490 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~ 490 (680)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 256
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.72 E-value=0.0013 Score=62.72 Aligned_cols=36 Identities=42% Similarity=0.576 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHH-HHhcC----CCCCCc----eEEECCee
Q 005740 465 VVAIVGLSGSGKSTFVN-LLLRL----YEPSDG----QIYIDGFP 500 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~-LL~r~----y~p~~G----~I~idG~d 500 (680)
+++|+|++|+|||||++ ++.+- |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999996 55554 778877 77777754
No 257
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.70 E-value=0.0043 Score=56.99 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
+.+.-+-|.||+|+|||++++.+......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45667999999999999999999887654
No 258
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.69 E-value=2.5e-05 Score=83.84 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhc
Q 005740 572 LLSGGQKQRIAIARAIL-RDPAILLLDE---AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 641 (680)
Q Consensus 572 ~LSGGQrQRIaIARAll-~~p~ILILDE---aT------SaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~a 641 (680)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|.++.++ .+.|+++++|--..-+-+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHH
Confidence 46778889999999885 5999999999 54 689999999999999776432 268999999864444557
Q ss_pred CEEEEEeCCEEEEecChHHHhh
Q 005740 642 DRIVVIDDGRIIEVGNHAELLH 663 (680)
Q Consensus 642 D~I~vl~~G~Ive~Gth~eLl~ 663 (680)
|++.++++ +++.|+.+||.+
T Consensus 336 ~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHHHH--HhcccchhHhhc
Confidence 77777765 566777777754
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.68 E-value=0.00046 Score=66.87 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=52.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC-------------CCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 531 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y-------------~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI 531 (680)
.+.|+||||||||||++-|+.-+ +|-.|++ ||+|..=++.++..+.+. ++-+|-.+.+..|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~- 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETTE-
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHHH---cCCEEEEEEEcCc-
Confidence 37899999999999999886433 3567774 899998888888877654 6666666666555
Q ss_pred hcCCCCCCCHHHHHHHH
Q 005740 532 MYGCPKDVKNEDIEWAA 548 (680)
Q Consensus 532 ~~g~~~~~s~eei~~A~ 548 (680)
.||- +.+++.+++
T Consensus 77 ~YGt----~~~~v~~~l 89 (186)
T 1ex7_A 77 YYGS----TVASVKQVS 89 (186)
T ss_dssp EEEE----EHHHHHHHH
T ss_pred eeee----ecceeeehh
Confidence 4552 345555544
No 260
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.67 E-value=0.0092 Score=59.80 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=22.7
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++..-+.|.||+|+||||+++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998754
No 261
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.64 E-value=0.00033 Score=75.20 Aligned_cols=59 Identities=27% Similarity=0.286 Sum_probs=42.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 544 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~eei 544 (680)
+++|||++|+|||||++.|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999874 3 23333322 666666554 3567788
Q ss_pred HHHHHHhcHHH
Q 005740 545 EWAAKQAYVHE 555 (680)
Q Consensus 545 ~~A~~~a~l~d 555 (680)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888877654
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.00099 Score=62.96 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.5
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
|..+.|+|+|||||||+.+.|..-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
No 263
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.60 E-value=0.00072 Score=72.97 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=46.5
Q ss_pred cCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHhccCCCCeEEEEEecCcchH-------------hhcCEEEEEeCC
Q 005740 589 RDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------KAVDRIVVIDDG 650 (680)
Q Consensus 589 ~~p~ILILDEaTSaLD---~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti-------------~~aD~I~vl~~G 650 (680)
..|.++++|||=.-++ +.....+.+.+++.++ .|..++++||+++-+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk---~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK---YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG---GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh---hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 5677788888888774 478999999999755 467777777654
No 264
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.59 E-value=0.00083 Score=63.99 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 265
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.57 E-value=0.00027 Score=69.01 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=50.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccCCc----CccccHHHHHh--cCC-CC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIM--YGC-PK 537 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd~~----LF~gTI~eNI~--~g~-~~ 537 (680)
.++|+|++||||||++++|.+.+.+....+. ++. ++. ++..++++.+. ++. ..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEe-ecCCCCcchhhHHHHHHcccccccCC
Confidence 6899999999999999999999875433332 111 111 11334555442 110 01
Q ss_pred CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCC
Q 005740 538 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 571 (680)
Q Consensus 538 ~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~ 571 (680)
+...+++..++..+...+.|..++.+.+++|.|+
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~ 95 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDR 95 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECC
Confidence 1222334444444444677877777778888775
No 266
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.00086 Score=71.20 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
..+..+.|.||+|+||||+++.+.+-..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5577899999999999999999987663
No 267
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.57 E-value=0.00041 Score=73.74 Aligned_cols=37 Identities=38% Similarity=0.445 Sum_probs=33.7
Q ss_pred CcccceeEEeeCCcE--EEEeCCCCCcHHHHHHHHhcCC
Q 005740 451 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~--vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999998753
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.51 E-value=0.0061 Score=65.28 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.7
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
-+++|+.+.|.|++|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 479999999999999999999866554
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.50 E-value=0.0012 Score=61.81 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 270
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.49 E-value=0.0084 Score=63.78 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.9
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++...+.|.||+|+||||+++.+.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998764
No 271
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.49 E-value=0.001 Score=69.59 Aligned_cols=47 Identities=28% Similarity=0.219 Sum_probs=36.5
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc----CCCCCCceEEECC
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPSDGQIYIDG 498 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r----~y~p~~G~I~idG 498 (680)
.++++..+.+ .|..++|+|+||+||||++..|.+ +...+...|...|
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4688888888 799999999999999999998887 4444444554443
No 272
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.42 E-value=0.0017 Score=62.77 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+|..++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999987
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.42 E-value=0.0015 Score=62.24 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.38 E-value=0.0017 Score=61.82 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+|..+.|.|++||||||+++.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988553
No 275
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.35 E-value=0.002 Score=63.25 Aligned_cols=32 Identities=44% Similarity=0.512 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 498 (680)
.+-.++|+|++||||||+++.|.++ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999982 5566664
No 276
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.35 E-value=0.017 Score=60.61 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.4
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+|..-+.|.||+|+||||+++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466789999999999999999999865
No 277
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0046 Score=64.85 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=25.2
Q ss_pred EEeeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 458 LTIEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 458 l~I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
--+++|..+.|.||+|+|||||+.-+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999998875
No 278
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.32 E-value=0.0016 Score=61.89 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=24.8
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC----CCCCCc
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL----YEPSDG 492 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~----y~p~~G 492 (680)
-+++++|++|+|||||++.+.+- |.|+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 47999999999999999999876 356666
No 279
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.30 E-value=0.0065 Score=62.86 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+...+.|.||+|+|||+|++.+++-.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999999866
No 280
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.28 E-value=0.002 Score=66.61 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 498 (680)
+|..+.|+|+|||||||+++.|..-++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987553 46677776
No 281
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.27 E-value=0.0024 Score=62.53 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=23.9
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHh
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~ 484 (680)
++.++++.+ ...+|+||+||||||++..|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344556655 489999999999999999774
No 282
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.26 E-value=0.0014 Score=70.37 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=44.2
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcchHhhcCEEEE
Q 005740 580 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 646 (680)
Q Consensus 580 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlsti~~aD~I~v 646 (680)
+.+|++||..+|+++++|||| |.++- ..+++.. ..|.+++.++|..+....+||++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~----~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAA----ETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHH----TTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHH----hcCCEEEEEECcchHHHHHHHHHH
Confidence 569999999999999999999 77653 3445444 247899999999887666777643
No 283
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.25 E-value=0.002 Score=64.22 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=27.6
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhc---CCCCCCceEE
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLR---LYEPSDGQIY 495 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r---~y~p~~G~I~ 495 (680)
=++|.+++|+|++||||||+.+.|.+ +.-++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 35688999999999999999999986 3334445443
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.25 E-value=0.002 Score=59.98 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.3
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLL 483 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL 483 (680)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.25 E-value=0.0017 Score=62.04 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=24.0
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++|..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 286
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.21 E-value=0.0033 Score=67.13 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=32.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc-----------CCCCCCceEEECC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 498 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r-----------~y~p~~G~I~idG 498 (680)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578899988876
No 287
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.20 E-value=0.033 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++..+.|.||+|+||||+++.+.+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999998887765
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.17 E-value=0.0016 Score=61.75 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.9
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++..+.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998655
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.13 E-value=0.0022 Score=61.36 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.2
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 290
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.10 E-value=0.013 Score=62.37 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++..-+.|.||+|+||||+++.+.+..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999765
No 291
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.09 E-value=0.0025 Score=61.88 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.3
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++|..++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
No 292
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0083 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+.|.||+|+||||+++.+.+.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.07 E-value=0.0017 Score=61.80 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.7
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCCC---ceEEECCe
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGF 499 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~~---G~I~idG~ 499 (680)
..++|+|+|||||||++.-|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998765432 55665554
No 294
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.07 E-value=0.0028 Score=61.30 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=25.0
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
+|..++|.|++||||||+++.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999987754
No 295
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.07 E-value=0.017 Score=72.64 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=30.8
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceE-EECC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 498 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I-~idG 498 (680)
-+++|+.+.|.||+|+|||||+.-++.-.....|.+ ++++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 389999999999999999999988876554443333 3344
No 296
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.02 E-value=0.0012 Score=63.57 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=25.5
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998866
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.02 E-value=0.003 Score=61.41 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.4
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++|..++|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998654
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.00 E-value=0.0028 Score=59.91 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++|+|++||||||+.+.|.+-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999998765
No 299
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.98 E-value=0.045 Score=59.84 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=29.2
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEE
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 496 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~i 496 (680)
++.+++++|++|+||||++.-|++.+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999888765556654
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0039 Score=59.36 Aligned_cols=101 Identities=20% Similarity=0.105 Sum_probs=52.0
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHh-hccEEEEccCCcCccccHHHHHhcCCCCCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 540 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~L-R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s 540 (680)
++..++|+|++||||||+.+.|..-+ |-..+| .+++ |+... + ...-+...+++-+.-| . ...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~----~~~~i~--------~d~~~~~~~~--~-~~~~~~~~~~~~~~~g-~-~~~ 64 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY----GYTHLS--------AGELLRDERK--N-PDSQYGELIEKYIKEG-K-IVP 64 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH----CCEEEE--------HHHHHHHHHH--C-TTSTTHHHHHHHHHTT-C-CCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh----CCeEEe--------HHHHHHHHHh--c-cCChHHHHHHHHHHCC-C-cCC
Confidence 35689999999999999999998654 222332 2222 11110 0 0111223355555444 2 234
Q ss_pred HHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHH
Q 005740 541 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 580 (680)
Q Consensus 541 ~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQR 580 (680)
++.....+.. .+.+.+..+..|-.-.++...++..|+|.
T Consensus 65 ~~~~~~~l~~-~~~~~~~~~~~~~~vi~dg~~~~~~~~~~ 103 (196)
T 1tev_A 65 VEITISLLKR-EMDQTMAANAQKNKFLIDGFPRNQDNLQG 103 (196)
T ss_dssp HHHHHHHHHH-HHHHHHHHCTTCCEEEEESCCCSHHHHHH
T ss_pred HHHHHHHHHH-HHHhhhccccCCCeEEEeCCCCCHHHHHH
Confidence 4433333333 24555666655544444444566666654
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0036 Score=63.39 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.3
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+.++|+|||||||||+.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.77 E-value=0.0039 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 303
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.77 E-value=0.0065 Score=60.44 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEecC-----------cchHhhcCEEEEEe
Q 005740 590 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 648 (680)
Q Consensus 590 ~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHR-----------lsti~~aD~I~vl~ 648 (680)
+++++++||+-- |+.+ +.+.++.+.+ .+.++|++-|+ ...+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~---~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE---NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH---TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh---CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6654 2233444433 26899999993 23456799998864
No 304
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.76 E-value=0.012 Score=59.60 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.9
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
++...+-|.||+|+||||+++.+.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999885
No 305
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.73 E-value=0.0074 Score=56.22 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998865
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.73 E-value=0.0036 Score=59.23 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=18.7
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998654
No 307
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.73 E-value=0.012 Score=53.77 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.4
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+.+.-+-|.||+|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3456799999999999999999987643
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.72 E-value=0.0098 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.1
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
++.-+++++|++|+|||||++-+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999976
No 309
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.70 E-value=0.0039 Score=60.06 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
++++||++|+|||||++-+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999653
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.68 E-value=0.0057 Score=60.05 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.7
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998765
No 311
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0096 Score=54.85 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999987
No 312
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.65 E-value=0.041 Score=59.75 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=27.5
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 498 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG 498 (680)
=++.+.+.|+|++||||||+++.|..-+ |-..+|.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 4567899999999999999999998744 4444543
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.64 E-value=0.0051 Score=60.07 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++|.|++||||||+++.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996654
No 314
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.62 E-value=0.0048 Score=58.59 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=21.9
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+..++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998754
No 315
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.60 E-value=0.031 Score=57.41 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.8
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
..+.|+|++||||||+.+.|..-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.59 E-value=0.0062 Score=58.82 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.5
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+..++|+|++||||||+++.|...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998755
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.58 E-value=0.0059 Score=58.40 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.++|.|++||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 318
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.58 E-value=0.034 Score=60.99 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.3
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+..-+.|.||+|+|||||++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 566789999999999999999999865
No 319
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.56 E-value=0.0057 Score=59.02 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998855
No 320
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.55 E-value=0.005 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++|+|++||||||+++.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997655
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.53 E-value=0.0051 Score=59.41 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.1
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
...++|.|++||||||+.+.|..-+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998655
No 322
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.52 E-value=0.0059 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.52 E-value=0.0067 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 324
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.50 E-value=0.007 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-+.++|.|++||||||+.+.|..-+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 325
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.50 E-value=0.0062 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.8
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++..+.|+|++||||||+++.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998655
No 326
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.01 Score=57.50 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++|+|||||++-+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999997764
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.43 E-value=0.0069 Score=57.64 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998865
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.42 E-value=0.0072 Score=58.64 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.7
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-.++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999999763
No 329
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.39 E-value=0.0062 Score=59.88 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.5
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.+..+.|+|++||||||+.+.|..-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987663
No 330
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.35 E-value=0.022 Score=63.50 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=27.7
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 355543358999999999999999999976655433
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.35 E-value=0.0068 Score=57.54 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.35 E-value=0.0041 Score=64.38 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=19.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++-.+||.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998755
No 333
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.33 E-value=0.016 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
++.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999999999999986
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.32 E-value=0.0075 Score=60.73 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998754
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.30 E-value=0.0083 Score=60.20 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++-.++|.|++||||||+++.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998655
No 336
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.30 E-value=0.0082 Score=55.17 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 337
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.28 E-value=0.012 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++-+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999997654
No 338
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.26 E-value=0.017 Score=60.37 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.9
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
.+..-+-|.||+|+||||+++.+.+.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999875
No 339
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.23 E-value=0.0077 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 340
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.22 E-value=0.0098 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 69999999999999999998754
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.19 E-value=0.019 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
.=+++++|++|+|||||++-+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999965
No 342
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.19 E-value=0.0095 Score=54.49 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988875
No 343
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.19 E-value=0.012 Score=55.85 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++|+|||||++.|.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999887
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.19 E-value=0.013 Score=53.71 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999885
No 345
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.18 E-value=0.012 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 346
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.17 E-value=0.01 Score=54.76 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++-+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997643
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.0098 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.-+++++|++|+|||||++.|.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 348
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.13 E-value=0.056 Score=56.40 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.0
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
..+.|.||+|+||||+++.+.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 349
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.13 E-value=0.011 Score=62.21 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=24.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
++..+.|+||||||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998774
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.10 E-value=0.01 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 351
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.10 E-value=0.011 Score=54.09 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 352
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.08 E-value=0.0098 Score=60.31 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999874
No 353
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.08 E-value=0.032 Score=58.86 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=27.2
Q ss_pred ccceeEEeeCCc---EEEEeCCCCCcHHHHHHHHhcCCCCC
Q 005740 453 LNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYEPS 490 (680)
Q Consensus 453 L~~isl~I~~Ge---~vAIVG~SGsGKSTL~~LL~r~y~p~ 490 (680)
++.+.-.+..|+ .+.|.||+|+||||+++.+.+.....
T Consensus 25 ~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp HHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 333333344444 48899999999999999998866543
No 354
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.07 E-value=0.01 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
+++++|++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987653
No 355
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.07 E-value=0.018 Score=55.32 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=26.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC-----CCCCCc------eEEECCe
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDG------QIYIDGF 499 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G------~I~idG~ 499 (680)
+++++|++|+|||||++-|.+- |.|+.| .+.++|.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 55 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 55 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE
Confidence 6999999999999999999753 445544 4566664
No 356
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.06 E-value=0.011 Score=54.30 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 357
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.05 E-value=0.0096 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.04 E-value=0.011 Score=54.47 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999854
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.02 E-value=0.015 Score=54.86 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC-----CCCCCce
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 493 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 493 (680)
+++++|++|+|||||++.+.+- |.|+.|.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 42 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 42 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce
Confidence 6899999999999999998864 4555553
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.02 E-value=0.012 Score=59.74 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.0
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998753
No 361
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.00 E-value=0.0099 Score=60.52 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999998753
No 362
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.00 E-value=0.012 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999888753
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.98 E-value=0.012 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.98 E-value=0.012 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.97 E-value=0.01 Score=61.05 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 366
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.97 E-value=0.016 Score=56.42 Aligned_cols=36 Identities=31% Similarity=0.200 Sum_probs=29.1
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
..++..-+.+ .|..+.|+||||||||||+.-|..-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3577766665 58899999999999999998887643
No 367
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.97 E-value=0.01 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 368
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.96 E-value=0.066 Score=58.71 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=27.4
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
-|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555544589999999999999999999766554
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.93 E-value=0.01 Score=60.62 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
++++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988754
No 370
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.93 E-value=0.012 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999763
No 371
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.93 E-value=0.092 Score=58.29 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=24.4
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++...+-|.||+|+|||++++.+.+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998754
No 372
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.84 E-value=0.011 Score=55.98 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
--+++++|++|+|||||++-|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999864
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.83 E-value=0.013 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+|-.+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998766
No 374
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.82 E-value=0.014 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 375
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.79 E-value=0.011 Score=57.76 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.5
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+..++|+|++||||||+.+.|.+.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 376
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.79 E-value=0.012 Score=55.58 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++-+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998753
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.79 E-value=0.014 Score=54.98 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 378
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.75 E-value=0.025 Score=52.94 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999884
No 379
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.73 E-value=0.016 Score=53.90 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 380
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.72 E-value=0.015 Score=59.58 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++.|.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 381
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.72 E-value=0.023 Score=53.10 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=23.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc-----CCCCCCce
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 493 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r-----~y~p~~G~ 493 (680)
+++++|++|+|||||++-+.+ -|+|+.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 699999999999999999883 34566553
No 382
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.71 E-value=0.013 Score=65.72 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccE
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 513 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I 513 (680)
....+.+||.+||||||+.+.|.+.+. ..|.|..-++.+++|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~-------~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN-------WIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-------HTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-------hcCCCeEEecccHHHHHh
Confidence 346799999999999999999987653 123333345566666654
No 383
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.71 E-value=0.02 Score=54.36 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.7
Q ss_pred cEEEEeCCCCCcHHHHHHHHhc------CCCCCCc
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLR------LYEPSDG 492 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r------~y~p~~G 492 (680)
-+++|+|++|+|||||++-+.+ -|.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 4699999999999999999987 4566666
No 384
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.71 E-value=0.015 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999865
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.022 Score=54.02 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-|.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999976
No 386
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.67 E-value=0.014 Score=57.04 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998755
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.67 E-value=0.0016 Score=76.98 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=45.4
Q ss_pred ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHHHhhccEEEEccC
Q 005740 455 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 519 (680)
Q Consensus 455 ~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~LR~~I~~V~Qd 519 (680)
..++.+++|+.+.++||+|+|||||++.|++... .+-|.+++.++.+--..+..+.+..++|.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 4577889999999999999999999999999874 45677777776543222323334444443
No 388
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.016 Score=54.08 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999999875
No 389
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.65 E-value=0.014 Score=55.00 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 390
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.64 E-value=0.11 Score=55.67 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.7
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++..+.|.||+|+||||+++.+++..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998763
No 391
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.62 E-value=0.1 Score=65.77 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.8
Q ss_pred CcccceeEE---eeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 451 PILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 451 ~VL~~isl~---I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+-|+.+ +. +++|+.+-|.||+|+|||||+.-++.-
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346655 33 899999999999999999997766543
No 392
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.021 Score=54.30 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=22.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC-----CCCCCc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDG 492 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G 492 (680)
+++++|++|+|||||++-+.+- +.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5899999999999999998753 445555
No 393
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.57 E-value=0.017 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998764
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.57 E-value=0.015 Score=54.00 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999874
No 395
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.57 E-value=0.031 Score=54.83 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+|+|||++|+|||||++-+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 396
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.56 E-value=0.017 Score=56.91 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 397
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.55 E-value=0.023 Score=55.08 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC-----CCCCCce
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 493 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 493 (680)
+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~ 63 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 63 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence 6999999999999999999875 3555553
No 398
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.53 E-value=0.019 Score=59.85 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.8
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+..++|+||||||||||+.-|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45799999999999999999987663
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.53 E-value=0.017 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 400
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.0084 Score=58.00 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=24.2
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+..|+.|.-..--+++++|++|+|||||++.+.+-
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 44555554444458999999999999999999873
No 401
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.48 E-value=0.018 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.48 E-value=0.018 Score=53.81 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-|.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999999975
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.47 E-value=0.021 Score=56.67 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+..+.|+|++||||||+++.|..-|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998766
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.46 E-value=0.017 Score=61.04 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.3
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
..++|+||||||||||.+.|..-+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999988764
No 405
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.46 E-value=0.02 Score=61.24 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=26.2
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHh
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 484 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~ 484 (680)
+++..+++.+ ..++|+|++|||||||+..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4677777766 589999999999999999876
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.42 E-value=0.031 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
=+++++|++|+|||||++-+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 407
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.40 E-value=0.03 Score=53.20 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 408
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.37 E-value=0.02 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++-+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998753
No 409
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.37 E-value=0.019 Score=59.57 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|||++|+|||||++.|.+-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999974
No 410
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.36 E-value=0.02 Score=54.85 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++.|.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998764
No 411
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.36 E-value=0.11 Score=66.39 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.3
Q ss_pred cccceeE--EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCC-CceEEECC
Q 005740 452 ILNHVCL--TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDG 498 (680)
Q Consensus 452 VL~~isl--~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~-~G~I~idG 498 (680)
-|+.+-= =+++|+.+-|.||+|+|||||+.-++.-.... ..-+++++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4555421 38999999999999999999987776544322 22344444
No 412
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.35 E-value=0.018 Score=57.42 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=22.5
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.+|..+.|-|++||||||++++|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999988774
No 413
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.35 E-value=0.026 Score=53.43 Aligned_cols=21 Identities=48% Similarity=0.744 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999985
No 414
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.34 E-value=0.018 Score=57.85 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
-+|+|+|++|+|||||++-|.+-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999874
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.33 E-value=0.019 Score=56.72 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=26.5
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
++|..+.+-|++||||||++++|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999988865
No 416
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.32 E-value=0.02 Score=54.67 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=23.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC-----CCCCCce
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 493 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 493 (680)
+++|+|++|+|||||++-+.+- |.|+.|.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 49 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 49 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce
Confidence 5899999999999999999753 4455553
No 417
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.30 E-value=0.023 Score=53.12 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
..+..+.|+||+|+||||+++.+.+.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999887653
No 418
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.29 E-value=0.019 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.29 E-value=0.023 Score=56.02 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=25.4
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
.+|..++|.|++||||||++++|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887753
No 420
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.26 E-value=0.021 Score=54.62 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 421
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.26 E-value=0.028 Score=53.48 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.0
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
.++..-+.+ .|.-+.|.|+||+||||++..|.+
T Consensus 6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555544 488999999999999999987764
No 422
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.25 E-value=0.022 Score=53.91 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 423
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.25 E-value=0.021 Score=54.00 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++.|.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 424
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.014 Score=54.72 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.7
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
+.-+++++|++|+|||||++-+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998873
No 425
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.021 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.2
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 426
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.24 E-value=0.023 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 427
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.22 E-value=0.013 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.-+++++|++|+|||||++-|.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
No 428
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.25 Score=53.79 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.0
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-+++-.-+-+.||+|+|||++++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45666779999999999999999999754
No 429
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.21 E-value=0.052 Score=55.82 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHhcCC
Q 005740 466 VAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 466 vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+.|.||+|+||||+++.+.+-.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 430
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.21 E-value=0.022 Score=53.21 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988864
No 431
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.15 E-value=0.023 Score=55.85 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.7
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
-+++++|++|+|||||++-+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999863
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.15 E-value=0.023 Score=54.17 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-|.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999976
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.12 E-value=0.016 Score=58.72 Aligned_cols=29 Identities=41% Similarity=0.497 Sum_probs=24.9
Q ss_pred eeCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 460 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 460 I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
.++|..|+|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35778999999999999999999998774
No 434
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.11 E-value=0.021 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
=+++++|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999999864
No 435
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.10 E-value=0.023 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+++++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 699999999999999999888554
No 436
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.09 E-value=0.048 Score=56.63 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHhccCCCCeEEEEEecCcch
Q 005740 590 DPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 637 (680)
Q Consensus 590 ~p~ILILDEaTSaLD-~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst 637 (680)
+++++++||+-. +. .+....+.+.+++.. .+..+|+++.+...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~----~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS----SNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG----GGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC----CCcEEEEEeCCccc
Confidence 789999999854 33 455555555565542 34577888887654
No 437
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.09 E-value=0.024 Score=58.99 Aligned_cols=23 Identities=52% Similarity=0.586 Sum_probs=21.1
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
-+|||+|++|+|||||++-|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999974
No 438
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.08 E-value=0.025 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.07 E-value=0.027 Score=55.99 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.0
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
++|..+++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987664
No 440
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.077 Score=57.97 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.5
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-++|-.-+-+.||+|+|||+|++.+++-.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46777889999999999999999999854
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.05 E-value=0.025 Score=56.66 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999988775
No 442
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.04 E-value=0.1 Score=61.00 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+-++||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 443
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.023 Score=54.00 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++-+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999998853
No 444
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.02 E-value=0.029 Score=52.29 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
-=+++++|++|+|||||++-+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998875
No 445
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.00 E-value=0.012 Score=64.80 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=32.5
Q ss_pred cccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCce
Q 005740 452 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493 (680)
Q Consensus 452 VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~ 493 (680)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 55555 677889999999999999999999998765443343
No 446
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.97 E-value=0.025 Score=59.31 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
..+.|+||||||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.96 E-value=0.024 Score=56.40 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+|..++|.|..||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998774
No 448
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.96 E-value=0.028 Score=55.42 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
+|..+.+.|++||||||++++|...++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999988775
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.93 E-value=0.016 Score=57.28 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=60.2
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH-HhhccEEEEccCCcCccccHHHHHhcCCCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLLQMDIKSNIMYGCPK 537 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~-~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 537 (680)
+.++...+.|+||.||||+|.++.|..-|. -..| +.. -+|+.+. .+.. ....+++-+.-| .
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g----~~hI--------stGdllR~~i~---~~t~-lg~~~~~~~~~G-~- 86 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH----FNHL--------SSGDLLRAEVQ---SGSP-KGKELKAMMERG-E- 86 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC----CEEE--------CHHHHHHHHHT---TCCH-HHHHHHHHHHHT-C-
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC----CceE--------cHHHHHHHHHH---cCCc-hHHHHHHHHhcC-C-
Confidence 345677899999999999999999998773 2223 222 2454432 1111 112245555556 2
Q ss_pred CCCHHHHHHHHHHhcHHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHHccCCCeEEEe
Q 005740 538 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 597 (680)
Q Consensus 538 ~~s~eei~~A~~~a~l~dfI~~LP~G~dT~vge~~LSGGQrQRIaIARAll~~p~ILILD 597 (680)
-++|+-+.+..+.. +.+.++.-.-.|-++ +.--..|-.++.+.+..---++.||
T Consensus 87 lVpde~~~~lv~~~-----l~~~~~~~~g~ilDG-fPRt~~Qa~~l~~~~~~~~~vi~l~ 140 (217)
T 3umf_A 87 LVPLEVVLALLKEA-----MIKLVDKNCHFLIDG-YPRELDQGIKFEKEVCPCLCVINFD 140 (217)
T ss_dssp CCCHHHHHHHHHHH-----HHHHTTTCSEEEEET-BCSSHHHHHHHHHHTCCCSEEEEEE
T ss_pred CCCHHHHHHHHHHH-----HhhccccccCccccc-CCCcHHHHHHHHHhCCccCEEEecc
Confidence 56777666654432 333333222223221 1112346566666554333344554
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.92 E-value=0.025 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 451
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.027 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
=+++++|++|+|||||++-|.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999753
No 452
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.91 E-value=0.026 Score=54.20 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++|+|||||++-+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999999875
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.027 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
.=+|+++|++|+|||||++-+.+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999874
No 454
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.026 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.6
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999984
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.86 E-value=0.029 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+.=+++|+|++|+|||||++-+.+-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999998753
No 456
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.86 E-value=0.025 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-+++|+|++|+|||||++-|.+-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999887653
No 457
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.83 E-value=0.023 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998875
No 458
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.82 E-value=0.03 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|.+|+|||||++-|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999843
No 459
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.81 E-value=0.032 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++.|.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 460
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.81 E-value=0.022 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
=+++++|++|+|||||++-+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999987643
No 461
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.80 E-value=0.024 Score=53.26 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 462
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.75 E-value=0.033 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
.=+++++|++|+|||||++-+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999988753
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.73 E-value=0.032 Score=52.96 Aligned_cols=29 Identities=34% Similarity=0.553 Sum_probs=22.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhc-----CCCCCCce
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 493 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r-----~y~p~~G~ 493 (680)
+++++|++|+|||||++-+.+ -|.|+-|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 699999999999999987764 24566553
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.73 E-value=0.029 Score=54.49 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 465
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.70 E-value=0.046 Score=52.67 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.9
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhc
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
.=+++++|++|+|||||++-+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34799999999999999987763
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.67 E-value=0.034 Score=57.89 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.7
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
...+.|+||||||||||+.-|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45799999999999999999987763
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.66 E-value=0.033 Score=56.63 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=23.1
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCCCce
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 493 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~ 493 (680)
.++++||.+|+|||||++.|.+-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876655454
No 468
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.65 E-value=0.03 Score=56.64 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++.|.+-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999973
No 469
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.64 E-value=0.022 Score=53.38 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=9.5
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998864
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.64 E-value=0.03 Score=56.91 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++++|++|+|||||++.|.+--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.63 E-value=0.043 Score=53.38 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=24.0
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC-----CCCCCce
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL-----YEPSDGQ 493 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~-----y~p~~G~ 493 (680)
=+++++|++|+|||||++-+.+- |.|+-|.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~ 62 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE 62 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence 36999999999999999988754 4555554
No 472
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.63 E-value=0.028 Score=52.45 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.1
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
+.+..+.|+||+|+||||+++.+.+....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999887643
No 473
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.57 E-value=0.03 Score=57.83 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.++|||++|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 474
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.57 E-value=0.044 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.5
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
-+++++|++|+|||||++-+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998864
No 475
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.56 E-value=0.03 Score=53.69 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++++|++|+|||||++-+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 476
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.48 E-value=0.1 Score=66.65 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCccccee--EEeeCCcEEEEeCCCCCcHHHHHHHHh
Q 005740 450 VPILNHVC--LTIEANEVVAIVGLSGSGKSTFVNLLL 484 (680)
Q Consensus 450 ~~VL~~is--l~I~~Ge~vAIVG~SGsGKSTL~~LL~ 484 (680)
.+.|+++. .-+++|+.+.++|++|||||||+..+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 35788887 579999999999999999999999877
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.48 E-value=0.015 Score=58.73 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 453 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 453 L~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++...++| +.|.||+|+||||+++.+.+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 44445555555 889999999999999999874
No 478
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.44 E-value=0.031 Score=57.15 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
+++|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 479
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.42 E-value=0.033 Score=53.18 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.9
Q ss_pred CcccceeEEeeCCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 451 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 451 ~VL~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
.+++.+. -++.=+++++|++|+|||||++-+.+
T Consensus 19 ~~~~~~~--~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 19 SLFSRIF--GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CGGGGTT--TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHHHHhc--cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 3555542 13455799999999999999999864
No 480
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.41 E-value=0.039 Score=57.32 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.4
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++-+++++|++|+|||||++-+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987653
No 481
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.38 E-value=0.016 Score=62.14 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=41.1
Q ss_pred cccEEEEEEEEEcCCCCCCCccc-----------ceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 432 MGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 432 ~g~I~f~nVsF~Y~~~~~~~VL~-----------~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
.+.+.|++++--||.. +.-++ |.=+.|-+|++.+|+|++|+|||||++-|.+..
T Consensus 135 ~~r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 135 NDRVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp -CCCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 3455677777667642 23455 666789999999999999999999999888853
No 482
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.37 E-value=0.11 Score=57.31 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=51.4
Q ss_pred CCCChHHHHHHHHH------HHHcc-----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHhccCCCCeEEEEEec
Q 005740 571 DLLSGGQKQRIAIA------RAILR-----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 633 (680)
Q Consensus 571 ~~LSGGQrQRIaIA------RAll~-----------~p~ILILDEaTSaLD~~tE~~I~~~l~~l~~~~~~~~TvIvIaH 633 (680)
+.+||||+|-.-+| .+.=. .-.+++|||| |-+|.+.-+...+.++++ |-=+|++|=
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiatP 450 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAAP 450 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEECc
Confidence 36899999953222 22211 1257999999 999999999999999887 556777776
Q ss_pred CcchHhhcCEEEEEe
Q 005740 634 RLSTIKAVDRIVVID 648 (680)
Q Consensus 634 Rlsti~~aD~I~vl~ 648 (680)
. .....+|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 6 4456689998775
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.036 Score=52.59 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999854
No 484
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.11 Score=55.90 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=24.4
Q ss_pred EeeCCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 459 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 459 ~I~~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-++|-.-+-+.||+|+|||+|++.+++-.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 35555669999999999999999998754
No 485
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.22 E-value=0.037 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.6
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
-+++|+|.+|+|||||++-+.+-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999998887653
No 486
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.19 E-value=0.021 Score=55.42 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++|+|||||++.|.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
No 487
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.19 E-value=0.039 Score=59.52 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCcHHHHHHHHhcCCC
Q 005740 463 NEVVAIVGLSGSGKSTFVNLLLRLYE 488 (680)
Q Consensus 463 Ge~vAIVG~SGsGKSTL~~LL~r~y~ 488 (680)
...++|+||||||||||+.-|+.-+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34789999999999999999987653
No 488
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.05 E-value=0.041 Score=61.31 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=26.0
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 489 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p 489 (680)
+.|-.+.++|.|||||||+.++|.+-+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999988764
No 489
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.00 E-value=0.036 Score=61.15 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcC----CCCCC--------ceEEECCeeCCCCCHHHhh
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRL----YEPSD--------GQIYIDGFPLTDLDIRWLR 510 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~----y~p~~--------G~I~idG~di~~~~~~~LR 510 (680)
.|=+|+|||++|+|||||++.|.+- ..+.. ..+.++|.++.=+|..-+|
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 3456999999999999999999873 12222 3578888776655554443
No 490
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.99 E-value=0.03 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.5
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhc
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r 485 (680)
+.=+++++|++|+|||||++-+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999998853
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.96 E-value=0.015 Score=63.74 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=30.9
Q ss_pred cEEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeC
Q 005740 464 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 501 (680)
Q Consensus 464 e~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di 501 (680)
..++++|++|+||||++.-|.+.+.....++.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999998875555666655454
No 492
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.94 E-value=0.025 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=4.6
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++++|++|+|||||++-+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999987643
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.93 E-value=0.044 Score=52.64 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhc
Q 005740 465 VVAIVGLSGSGKSTFVNLLLR 485 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r 485 (680)
+++|+|++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 599999999999999998875
No 494
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.051 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHhcC
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+++|+|++|+|||||++-|.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998763
No 495
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.80 E-value=0.068 Score=52.73 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=36.8
Q ss_pred cCCCeEEEeCCCCC----CCHHHHHHHHHHHHHHhccCCCCeEEEEEecCcch----------H-hhcCEEEEEe
Q 005740 589 RDPAILLLDEATSA----LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----------I-KAVDRIVVID 648 (680)
Q Consensus 589 ~~p~ILILDEaTSa----LD~~tE~~I~~~l~~l~~~~~~~~TvIvIaHRlst----------i-~~aD~I~vl~ 648 (680)
.+|+.+++|.-+.- -|......+...|.++.++ .+.|+++++|--.. + ..||-|+.|+
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~--~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH--cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 37899999975431 1334444555666665543 47899999985321 2 2599998885
No 496
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.61 E-value=0.041 Score=53.86 Aligned_cols=68 Identities=22% Similarity=0.232 Sum_probs=40.9
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCCCCCCceEEECCeeCCCCCHH-HhhccEEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 543 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~-~LR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~s~ee 543 (680)
.+.|.||.||||+|.++.|..-|. -..| +.. -||+.+. .+ .-...-+++-+.-| . -++|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~~~i--------stGdllR~~i~---~~-t~lg~~~~~~~~~G-~-lvpd~i 63 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----FVHI--------STGDILREAVQ---KG-TPLGKKAKEYMERG-E-LVPDDL 63 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----CEEE--------EHHHHHHHHHH---HT-CHHHHHHHHHHHHT-C-CCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----CeEE--------cHHHHHHHHHH---hc-ChhhhhHHHHHhcC-C-cCCHHH
Confidence 478999999999999999998773 2333 222 2454432 11 11222355566666 2 567776
Q ss_pred HHHHHHH
Q 005740 544 IEWAAKQ 550 (680)
Q Consensus 544 i~~A~~~ 550 (680)
+.+..+.
T Consensus 64 v~~lv~~ 70 (206)
T 3sr0_A 64 IIALIEE 70 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 497
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.59 E-value=0.053 Score=57.97 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHhcCC
Q 005740 462 ANEVVAIVGLSGSGKSTFVNLLLRLY 487 (680)
Q Consensus 462 ~Ge~vAIVG~SGsGKSTL~~LL~r~y 487 (680)
++..+++||++|+|||||+|.|.+-.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 57789999999999999999999863
No 498
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.48 E-value=0.054 Score=61.38 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.7
Q ss_pred eCCcEEEEeCCCCCcHHHHHHHHhcCCCCCCc---eEEECC
Q 005740 461 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDG 498 (680)
Q Consensus 461 ~~Ge~vAIVG~SGsGKSTL~~LL~r~y~p~~G---~I~idG 498 (680)
+.|..+.|.|.|||||||+++.|...+. ..| .+.+||
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~-~~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN-QQGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HHCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc-ccCCceEEEECc
Confidence 4567899999999999999999988764 223 466664
No 499
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.47 E-value=0.072 Score=56.32 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.5
Q ss_pred cceeEEeeCCcEEEEeCCCCCcHHHHHHHHhcC
Q 005740 454 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 486 (680)
Q Consensus 454 ~~isl~I~~Ge~vAIVG~SGsGKSTL~~LL~r~ 486 (680)
+.+.++++---.|+|||.+++|||||++.|.+-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 456667766668999999999999999999863
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.45 E-value=0.091 Score=57.39 Aligned_cols=36 Identities=36% Similarity=0.434 Sum_probs=27.4
Q ss_pred EEEEeCCCCCcHHHHHHHHhcCC----C--------CCCceEEECCee
Q 005740 465 VVAIVGLSGSGKSTFVNLLLRLY----E--------PSDGQIYIDGFP 500 (680)
Q Consensus 465 ~vAIVG~SGsGKSTL~~LL~r~y----~--------p~~G~I~idG~d 500 (680)
+|+|||.+++|||||++-|.+-- + ...|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 69999999999999999998743 2 335667777764
Done!