Query 005741
Match_columns 679
No_of_seqs 414 out of 2984
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:10:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 2.9E-64 1E-68 560.7 38.5 398 154-678 25-431 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 5.6E-62 1.9E-66 537.3 37.4 390 156-678 8-403 (523)
3 2db3_A ATP-dependent RNA helic 100.0 3.5E-53 1.2E-57 458.7 34.0 330 156-621 62-409 (434)
4 3i5x_A ATP-dependent RNA helic 100.0 1.7E-51 5.8E-56 462.1 26.9 352 150-622 72-452 (563)
5 3sqw_A ATP-dependent RNA helic 100.0 8.2E-51 2.8E-55 456.7 26.9 352 150-622 21-401 (579)
6 2i4i_A ATP-dependent RNA helic 100.0 7.1E-50 2.4E-54 432.2 32.9 334 156-622 21-386 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 3.9E-49 1.3E-53 425.5 33.4 329 156-620 43-384 (410)
8 3eiq_A Eukaryotic initiation f 100.0 3.7E-49 1.3E-53 426.2 27.6 330 156-620 46-388 (414)
9 1xti_A Probable ATP-dependent 100.0 3.8E-48 1.3E-52 414.9 32.7 329 156-618 14-356 (391)
10 1s2m_A Putative ATP-dependent 100.0 7.4E-48 2.5E-52 414.0 30.2 330 156-620 27-366 (400)
11 3pey_A ATP-dependent RNA helic 100.0 2E-47 6.8E-52 409.7 31.3 327 156-619 11-356 (395)
12 1hv8_A Putative ATP-dependent 100.0 1E-46 3.4E-51 400.1 34.1 325 156-620 12-346 (367)
13 2z0m_A 337AA long hypothetical 100.0 4.9E-47 1.7E-51 397.6 30.2 316 158-617 2-321 (337)
14 3fht_A ATP-dependent RNA helic 100.0 1.6E-46 5.5E-51 405.2 33.3 325 156-618 31-378 (412)
15 1fuu_A Yeast initiation factor 100.0 3.6E-48 1.2E-52 415.6 15.8 334 156-623 27-370 (394)
16 3fmp_B ATP-dependent RNA helic 100.0 1.5E-47 5.1E-52 421.2 14.8 332 156-622 98-449 (479)
17 3oiy_A Reverse gyrase helicase 100.0 3.8E-46 1.3E-50 402.4 24.3 320 159-616 8-362 (414)
18 4gl2_A Interferon-induced heli 100.0 7.5E-46 2.6E-50 427.1 18.8 455 173-678 7-595 (699)
19 2ykg_A Probable ATP-dependent 100.0 5.6E-46 1.9E-50 428.0 12.0 399 168-621 8-518 (696)
20 3fho_A ATP-dependent RNA helic 100.0 1.2E-45 4.2E-50 407.2 13.8 329 156-621 125-472 (508)
21 4a2p_A RIG-I, retinoic acid in 100.0 8.9E-44 3.1E-48 399.2 23.0 401 172-621 6-510 (556)
22 4a4z_A Antiviral helicase SKI2 100.0 1.8E-43 6.2E-48 414.0 22.9 435 167-678 34-574 (997)
23 3l9o_A ATP-dependent RNA helic 100.0 2.1E-42 7.1E-47 408.4 27.9 357 168-620 180-598 (1108)
24 4a2w_A RIG-I, retinoic acid in 100.0 2.3E-42 7.8E-47 405.4 27.5 404 169-621 244-751 (936)
25 3tbk_A RIG-I helicase domain; 100.0 1E-42 3.4E-47 390.5 23.0 402 173-621 4-509 (555)
26 4a2q_A RIG-I, retinoic acid in 100.0 4.9E-42 1.7E-46 398.7 27.7 405 168-621 243-751 (797)
27 2p6r_A Afuhel308 helicase; pro 100.0 4.6E-42 1.6E-46 394.1 27.0 336 157-621 10-390 (702)
28 4ddu_A Reverse gyrase; topoiso 100.0 1.4E-41 4.7E-46 401.3 27.9 292 160-591 66-388 (1104)
29 2zj8_A DNA helicase, putative 100.0 1.5E-41 5.2E-46 390.9 27.5 331 156-620 7-388 (720)
30 2xgj_A ATP-dependent RNA helic 100.0 4.8E-41 1.7E-45 393.4 31.7 357 167-619 81-499 (1010)
31 2va8_A SSO2462, SKI2-type heli 100.0 1.1E-40 3.7E-45 384.0 34.1 338 156-620 14-409 (715)
32 1wp9_A ATP-dependent RNA helic 100.0 3.9E-41 1.3E-45 371.0 29.1 411 173-621 9-477 (494)
33 1tf5_A Preprotein translocase 100.0 4.4E-40 1.5E-44 365.3 27.2 374 165-621 76-547 (844)
34 4f92_B U5 small nuclear ribonu 100.0 1E-40 3.5E-45 407.0 24.1 332 170-624 76-478 (1724)
35 4f92_B U5 small nuclear ribonu 100.0 4.1E-40 1.4E-44 401.6 28.0 329 170-621 923-1310(1724)
36 1gm5_A RECG; helicase, replica 100.0 3.2E-40 1.1E-44 374.5 19.5 309 161-617 357-695 (780)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 5.7E-40 2E-44 388.0 20.3 285 160-590 45-352 (1054)
38 2eyq_A TRCF, transcription-rep 100.0 2.4E-38 8.2E-43 376.1 31.7 311 161-619 592-922 (1151)
39 2oca_A DAR protein, ATP-depend 100.0 3.3E-39 1.1E-43 357.7 21.1 323 173-619 113-455 (510)
40 2fwr_A DNA repair protein RAD2 100.0 4.4E-39 1.5E-43 353.1 18.4 351 173-621 93-456 (472)
41 2fsf_A Preprotein translocase 100.0 1.7E-37 5.9E-42 343.4 27.4 375 163-621 65-585 (853)
42 2jlq_A Serine protease subunit 100.0 4.3E-38 1.5E-42 341.3 19.5 284 170-618 1-310 (451)
43 1nkt_A Preprotein translocase 100.0 8.2E-37 2.8E-41 338.1 26.9 380 161-621 100-619 (922)
44 3o8b_A HCV NS3 protease/helica 100.0 8.6E-38 2.9E-42 344.8 14.0 278 173-623 217-518 (666)
45 2wv9_A Flavivirin protease NS2 100.0 1.5E-38 5.2E-43 356.8 8.2 281 173-617 215-531 (673)
46 2whx_A Serine protease/ntpase/ 100.0 2E-37 6.8E-42 345.8 16.3 283 171-617 169-476 (618)
47 1yks_A Genome polyprotein [con 100.0 5.8E-38 2E-42 338.6 10.5 262 184-617 4-297 (440)
48 3dmq_A RNA polymerase-associat 100.0 1E-36 3.5E-41 357.8 18.7 395 173-616 153-610 (968)
49 3h1t_A Type I site-specific re 100.0 3.5E-36 1.2E-40 338.9 18.9 339 173-618 178-557 (590)
50 2v6i_A RNA helicase; membrane, 100.0 2.2E-35 7.7E-40 317.8 20.5 266 187-616 1-288 (431)
51 2z83_A Helicase/nucleoside tri 100.0 3.9E-36 1.3E-40 326.4 14.1 272 184-619 17-313 (459)
52 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-35 4.4E-40 339.4 16.2 323 156-621 78-445 (773)
53 1z63_A Helicase of the SNF2/RA 100.0 2.3E-34 7.7E-39 318.0 23.1 353 173-615 37-447 (500)
54 3rc3_A ATP-dependent RNA helic 100.0 8E-34 2.7E-38 317.4 21.6 276 183-618 150-444 (677)
55 3mwy_W Chromo domain-containin 100.0 2.7E-34 9.2E-39 332.7 17.3 398 173-615 236-678 (800)
56 1z3i_X Similar to RAD54-like; 100.0 4E-32 1.4E-36 306.8 28.1 104 512-615 416-522 (644)
57 3jux_A Protein translocase sub 100.0 1.2E-28 4.2E-33 267.0 30.9 121 498-620 459-588 (822)
58 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.4E-30 3.2E-34 296.1 22.4 338 159-617 251-707 (1038)
59 3fe2_A Probable ATP-dependent 100.0 3E-29 1E-33 249.3 18.5 181 156-353 35-230 (242)
60 3iuy_A Probable ATP-dependent 100.0 2.7E-29 9.4E-34 247.3 15.1 181 156-353 26-221 (228)
61 1q0u_A Bstdead; DEAD protein, 100.0 1.2E-28 4.1E-33 241.0 14.8 181 156-353 10-204 (219)
62 3ly5_A ATP-dependent RNA helic 100.0 2.5E-28 8.5E-33 245.2 17.1 182 156-353 60-255 (262)
63 1vec_A ATP-dependent RNA helic 100.0 6.2E-28 2.1E-32 233.7 18.0 181 156-353 9-200 (206)
64 3ber_A Probable ATP-dependent 100.0 8.2E-28 2.8E-32 239.5 18.4 182 156-353 49-240 (249)
65 3bor_A Human initiation factor 100.0 3.1E-28 1E-32 241.1 15.2 182 156-353 36-227 (237)
66 1t6n_A Probable ATP-dependent 100.0 8.4E-28 2.9E-32 235.3 16.4 181 156-352 20-212 (220)
67 1c4o_A DNA nucleotide excision 100.0 4.6E-27 1.6E-31 265.0 23.5 108 512-620 439-551 (664)
68 2oxc_A Probable ATP-dependent 99.9 1.2E-27 4.2E-32 235.6 16.5 180 156-352 30-220 (230)
69 1wrb_A DJVLGB; RNA helicase, D 99.9 2.1E-27 7.3E-32 237.6 18.2 178 161-353 34-232 (253)
70 2gxq_A Heat resistant RNA depe 99.9 3E-27 1E-31 229.0 18.4 181 156-353 7-198 (207)
71 2pl3_A Probable ATP-dependent 99.9 2.4E-27 8.1E-32 234.7 17.6 180 156-352 31-224 (236)
72 1qde_A EIF4A, translation init 99.9 3.4E-27 1.2E-31 231.7 17.5 180 156-353 20-209 (224)
73 3dkp_A Probable ATP-dependent 99.9 2E-28 6.9E-33 243.9 8.2 196 147-353 26-233 (245)
74 3fmo_B ATP-dependent RNA helic 99.9 2.9E-27 9.9E-32 241.8 16.1 179 156-353 98-290 (300)
75 2d7d_A Uvrabc system protein B 99.9 3.7E-25 1.3E-29 249.3 27.7 108 512-620 445-557 (661)
76 2ipc_A Preprotein translocase 99.9 8.4E-24 2.9E-28 233.5 29.2 131 161-299 68-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 8.8E-25 3E-29 202.6 13.2 125 495-620 19-143 (163)
78 1t5i_A C_terminal domain of A 99.9 1.3E-24 4.5E-29 203.1 13.5 122 496-618 16-137 (172)
79 3eaq_A Heat resistant RNA depe 99.9 8.8E-25 3E-29 211.6 12.6 124 496-620 16-139 (212)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.3E-25 2.1E-29 207.7 11.2 127 495-621 29-155 (185)
81 2p6n_A ATP-dependent RNA helic 99.9 2.3E-24 8E-29 204.6 13.2 123 495-619 39-161 (191)
82 2rb4_A ATP-dependent RNA helic 99.9 2.7E-24 9.2E-29 202.0 13.0 122 498-620 21-148 (175)
83 1fuk_A Eukaryotic initiation f 99.9 2.8E-24 9.7E-29 199.7 11.7 122 498-620 17-138 (165)
84 3i32_A Heat resistant RNA depe 99.9 1.5E-23 5.2E-28 212.4 12.7 124 496-620 13-136 (300)
85 2vl7_A XPD; helicase, unknown 99.9 2.6E-21 9E-26 213.8 26.8 128 169-299 4-188 (540)
86 2yjt_D ATP-dependent RNA helic 99.8 1.5E-24 5.2E-29 202.5 0.0 126 497-623 16-141 (170)
87 3b6e_A Interferon-induced heli 99.9 1.5E-21 5.1E-26 190.1 11.1 168 170-339 30-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.8 2.3E-18 7.7E-23 191.1 30.7 128 170-300 1-187 (551)
89 1rif_A DAR protein, DNA helica 99.8 1.2E-20 4.2E-25 191.5 11.5 145 173-343 113-265 (282)
90 2fz4_A DNA repair protein RAD2 99.8 3.9E-20 1.3E-24 182.1 13.3 139 173-344 93-232 (237)
91 3llm_A ATP-dependent RNA helic 99.8 4.3E-18 1.5E-22 167.7 15.6 154 173-353 61-228 (235)
92 1z5z_A Helicase of the SNF2/RA 99.8 3.5E-19 1.2E-23 178.2 6.9 120 496-615 95-218 (271)
93 4a15_A XPD helicase, ATP-depen 99.7 1.5E-15 5.2E-20 169.6 28.5 103 512-618 448-583 (620)
94 1w36_D RECD, exodeoxyribonucle 98.4 4.3E-07 1.5E-11 101.3 10.3 77 159-235 135-218 (608)
95 3hgt_A HDA1 complex subunit 3; 98.3 1.3E-06 4.3E-11 87.4 9.4 114 500-620 115-238 (328)
96 2gk6_A Regulator of nonsense t 98.1 8.6E-06 2.9E-10 91.2 10.1 73 171-243 178-254 (624)
97 4b3f_X DNA-binding protein smu 98.0 2.9E-06 9.8E-11 95.7 5.8 74 172-245 188-265 (646)
98 2wjy_A Regulator of nonsense t 97.9 1.9E-05 6.6E-10 90.2 8.3 73 171-243 354-430 (800)
99 2xzl_A ATP-dependent helicase 97.9 1.7E-05 5.8E-10 90.8 7.8 73 171-243 358-434 (802)
100 2cos_A Serine/threonine protei 97.8 2.3E-05 7.7E-10 53.9 4.5 44 3-47 5-49 (54)
101 1vg5_A RSGI RUH-014, rhomboid 97.8 3.9E-05 1.3E-09 58.1 5.7 46 5-50 26-71 (73)
102 1wji_A Tudor domain containing 97.7 5.7E-05 2E-09 55.7 5.9 42 8-49 9-50 (63)
103 3e1s_A Exodeoxyribonuclease V, 97.7 4E-05 1.4E-09 84.5 7.2 61 173-233 189-252 (574)
104 2g3q_A Protein YBL047C; endocy 97.7 3.5E-05 1.2E-09 52.4 4.2 39 8-46 4-42 (43)
105 1ify_A HHR23A, UV excision rep 97.7 3.6E-05 1.2E-09 53.7 4.2 39 8-46 8-46 (49)
106 3upu_A ATP-dependent DNA helic 97.6 4.4E-05 1.5E-09 82.3 5.8 66 168-233 20-94 (459)
107 2ekk_A UBA domain from E3 ubiq 97.6 6.7E-05 2.3E-09 52.0 4.7 40 6-46 7-46 (47)
108 2knz_A Ubiquilin-4; cytoplasm, 97.5 9.4E-05 3.2E-09 52.6 4.4 40 8-47 11-51 (53)
109 2jy5_A Ubiquilin-1; UBA, alter 97.5 0.00014 4.6E-09 51.5 5.2 43 5-47 9-52 (52)
110 2bwb_A Ubiquitin-like protein 97.4 0.00017 5.8E-09 49.4 4.7 39 8-46 7-46 (46)
111 2dah_A Ubiquilin-3; UBA domain 97.3 0.00028 9.4E-09 50.2 4.5 44 7-50 8-52 (54)
112 2dag_A Ubiquitin carboxyl-term 97.3 0.00061 2.1E-08 52.0 6.5 44 7-50 8-52 (74)
113 1vej_A Riken cDNA 4931431F19; 97.2 0.00044 1.5E-08 52.3 5.3 42 8-49 29-71 (74)
114 1wr1_B Ubiquitin-like protein 97.2 0.00038 1.3E-08 50.2 4.5 39 9-47 18-57 (58)
115 2dak_A Ubiquitin carboxyl-term 97.2 0.00031 1.1E-08 52.0 4.2 43 7-49 8-50 (63)
116 1wiv_A UBP14, ubiquitin-specif 97.2 0.00043 1.5E-08 52.7 5.1 42 8-49 29-70 (73)
117 1whc_A RSGI RUH-027, UBA/UBX 3 97.1 0.00027 9.1E-09 52.4 3.3 44 6-49 7-51 (64)
118 1z96_A DNA-damage, UBA-domain 97.1 0.00057 2E-08 45.5 4.5 38 7-44 3-40 (40)
119 2cpw_A CBL-interacting protein 97.0 0.00047 1.6E-08 51.0 3.6 41 8-48 19-60 (64)
120 1veg_A NEDD8 ultimate buster-1 97.0 0.0006 2.1E-08 52.8 4.3 39 8-46 29-67 (83)
121 2dai_A Ubadc1, ubiquitin assoc 97.0 0.00083 2.8E-08 52.4 4.8 44 7-50 28-71 (83)
122 2crn_A Ubash3A protein; compac 97.0 0.00077 2.6E-08 49.8 4.3 42 8-49 9-51 (64)
123 2o0j_A Terminase, DNA packagin 96.9 0.0078 2.7E-07 62.3 13.0 63 173-235 163-230 (385)
124 2dna_A Unnamed protein product 96.6 0.0028 9.4E-08 46.8 5.1 42 10-51 21-63 (67)
125 1wgn_A UBAP1, ubiquitin associ 96.6 0.0016 5.5E-08 46.2 3.7 42 7-48 18-59 (63)
126 1dv0_A DNA repair protein HHR2 96.5 0.00079 2.7E-08 46.3 1.3 39 9-47 5-43 (47)
127 2dkl_A Trinucleotide repeat co 96.5 0.0032 1.1E-07 49.3 4.8 41 9-49 22-62 (85)
128 1vek_A UBP14, ubiquitin-specif 96.4 0.0049 1.7E-07 48.3 5.5 44 7-50 28-72 (84)
129 2cp8_A NEXT to BRCA1 gene 1 pr 96.3 0.0033 1.1E-07 43.9 3.7 39 10-48 11-50 (54)
130 3cpe_A Terminase, DNA packagin 96.3 0.024 8.1E-07 62.8 12.5 63 173-235 163-230 (592)
131 2ooa_A E3 ubiquitin-protein li 96.1 0.007 2.4E-07 41.4 4.4 36 9-44 12-47 (52)
132 2cwb_A Chimera of immunoglobul 96.1 0.0049 1.7E-07 50.3 4.3 40 8-47 66-106 (108)
133 2juj_A E3 ubiquitin-protein li 96.1 0.0068 2.3E-07 41.7 4.1 38 8-45 7-44 (56)
134 3vkw_A Replicase large subunit 96.0 0.0064 2.2E-07 63.7 5.6 84 190-298 163-246 (446)
135 3ec2_A DNA replication protein 96.0 0.1 3.5E-06 47.6 13.3 31 175-205 16-55 (180)
136 3co5_A Putative two-component 95.9 0.083 2.8E-06 46.3 11.9 21 186-206 25-45 (143)
137 2d9s_A CBL E3 ubiquitin protei 95.9 0.0079 2.7E-07 41.4 3.8 36 10-45 11-46 (53)
138 2orw_A Thymidine kinase; TMTK, 95.7 0.023 7.9E-07 52.4 7.7 36 188-223 3-41 (184)
139 2oo9_A E3 ubiquitin-protein li 95.6 0.016 5.5E-07 38.3 4.3 36 9-44 5-40 (46)
140 2zpa_A Uncharacterized protein 95.5 0.022 7.6E-07 62.7 7.9 114 173-342 175-290 (671)
141 2kjq_A DNAA-related protein; s 95.5 0.056 1.9E-06 47.8 9.2 19 187-205 35-53 (149)
142 2lbc_A Ubiquitin carboxyl-term 95.5 0.014 4.6E-07 50.1 4.9 42 7-48 77-118 (126)
143 1xx6_A Thymidine kinase; NESG, 95.4 0.038 1.3E-06 51.2 7.8 36 188-223 8-46 (191)
144 3te6_A Regulatory protein SIR3 95.3 0.044 1.5E-06 55.1 8.6 18 188-205 45-62 (318)
145 2dr3_A UPF0273 protein PH0284; 95.2 0.23 7.8E-06 47.7 13.5 50 187-237 22-74 (247)
146 1a5t_A Delta prime, HOLB; zinc 95.1 0.083 2.8E-06 53.8 10.3 33 174-206 3-42 (334)
147 4ae4_A Ubiquitin-associated pr 95.0 0.021 7.3E-07 47.8 4.4 39 7-45 7-45 (118)
148 3lfu_A DNA helicase II; SF1 he 94.8 0.026 8.9E-07 63.4 6.0 63 172-236 8-77 (647)
149 1xp8_A RECA protein, recombina 94.8 0.27 9.1E-06 50.5 12.9 89 188-299 74-165 (366)
150 2chg_A Replication factor C sm 94.8 0.1 3.5E-06 49.0 9.3 16 189-204 39-54 (226)
151 3eie_A Vacuolar protein sortin 94.8 0.11 3.6E-06 52.7 9.9 19 189-207 52-70 (322)
152 1wj7_A Hypothetical protein (R 94.7 0.021 7.2E-07 45.9 3.5 42 7-48 38-80 (104)
153 1l8q_A Chromosomal replication 94.7 0.13 4.5E-06 52.0 10.5 18 188-205 37-54 (324)
154 2zr9_A Protein RECA, recombina 94.7 0.27 9.3E-06 50.2 12.8 89 188-299 61-152 (349)
155 2z43_A DNA repair and recombin 94.7 0.16 5.4E-06 51.4 11.0 103 181-299 95-216 (324)
156 1v5w_A DMC1, meiotic recombina 94.7 0.15 5E-06 52.1 10.8 102 182-299 111-232 (343)
157 3vfd_A Spastin; ATPase, microt 94.6 0.19 6.4E-06 52.4 11.7 21 188-208 148-168 (389)
158 2b8t_A Thymidine kinase; deoxy 94.6 0.07 2.4E-06 50.6 7.5 36 188-223 12-50 (223)
159 2p65_A Hypothetical protein PF 94.6 0.23 7.8E-06 45.1 10.9 18 188-205 43-60 (187)
160 1n0w_A DNA repair protein RAD5 94.6 0.34 1.2E-05 46.3 12.6 97 188-300 24-133 (243)
161 4ae4_A Ubiquitin-associated pr 94.6 0.026 8.9E-07 47.3 3.8 37 10-46 78-114 (118)
162 4a1f_A DNAB helicase, replicat 94.6 0.29 9.8E-06 49.6 12.3 140 188-339 46-205 (338)
163 2j9r_A Thymidine kinase; TK1, 94.5 0.036 1.2E-06 51.9 5.0 37 188-224 28-67 (214)
164 3h4m_A Proteasome-activating n 94.4 0.14 4.7E-06 50.7 9.5 20 188-207 51-70 (285)
165 1u94_A RECA protein, recombina 94.4 0.23 7.7E-06 50.9 11.2 89 188-299 63-154 (356)
166 3n70_A Transport activator; si 94.3 0.12 4.2E-06 45.3 8.0 20 187-206 23-42 (145)
167 2lbc_A Ubiquitin carboxyl-term 94.3 0.034 1.2E-06 47.6 4.0 39 9-47 4-43 (126)
168 3dm5_A SRP54, signal recogniti 94.1 0.93 3.2E-05 47.5 15.4 121 190-345 102-229 (443)
169 3syl_A Protein CBBX; photosynt 94.1 0.24 8.4E-06 49.5 10.8 17 189-205 68-84 (309)
170 1d2n_A N-ethylmaleimide-sensit 94.1 0.26 8.8E-06 48.3 10.7 18 189-206 65-82 (272)
171 3bos_A Putative DNA replicatio 94.0 0.07 2.4E-06 51.1 6.3 18 188-205 52-69 (242)
172 1fnn_A CDC6P, cell division co 94.0 0.14 4.8E-06 53.1 8.9 17 190-206 46-62 (389)
173 3kl4_A SRP54, signal recogniti 93.9 0.54 1.8E-05 49.3 13.1 122 190-345 99-228 (433)
174 2w58_A DNAI, primosome compone 93.9 0.43 1.5E-05 44.2 11.4 17 189-205 55-71 (202)
175 1oqy_A HHR23A, UV excision rep 93.8 0.038 1.3E-06 56.4 3.9 42 8-49 168-209 (368)
176 2cvh_A DNA repair and recombin 93.7 0.16 5.3E-06 47.9 8.1 35 188-222 20-54 (220)
177 2orv_A Thymidine kinase; TP4A 93.7 0.064 2.2E-06 50.8 5.1 36 188-223 19-57 (234)
178 1njg_A DNA polymerase III subu 93.7 0.16 5.5E-06 48.3 8.2 16 190-205 47-62 (250)
179 1gm5_A RECG; helicase, replica 93.6 0.14 4.9E-06 58.1 8.7 79 512-590 417-500 (780)
180 1g5t_A COB(I)alamin adenosyltr 93.6 0.27 9.1E-06 45.3 8.9 35 189-223 29-66 (196)
181 2qby_A CDC6 homolog 1, cell di 93.5 0.23 7.7E-06 51.3 9.6 19 188-206 45-63 (386)
182 2q6t_A DNAB replication FORK h 93.5 0.67 2.3E-05 49.1 13.4 111 188-300 200-324 (444)
183 3d8b_A Fidgetin-like protein 1 93.4 0.16 5.5E-06 52.2 8.1 22 188-209 117-138 (357)
184 1jbk_A CLPB protein; beta barr 93.4 0.63 2.2E-05 42.2 11.6 17 189-205 44-60 (195)
185 2r6a_A DNAB helicase, replicat 93.3 0.68 2.3E-05 49.2 13.0 118 181-300 192-327 (454)
186 4b4t_J 26S protease regulatory 93.3 0.25 8.4E-06 51.1 9.0 19 188-206 182-200 (405)
187 3e2i_A Thymidine kinase; Zn-bi 93.1 0.14 4.9E-06 47.8 6.3 37 188-224 28-67 (219)
188 3oiy_A Reverse gyrase helicase 93.1 0.21 7.2E-06 52.3 8.6 77 512-589 64-148 (414)
189 3pvs_A Replication-associated 93.1 0.18 6.1E-06 53.5 7.9 19 189-207 51-69 (447)
190 2v1u_A Cell division control p 93.0 0.2 6.9E-06 51.8 8.2 18 188-205 44-61 (387)
191 1xwi_A SKD1 protein; VPS4B, AA 92.9 0.29 9.8E-06 49.5 8.9 18 189-206 46-63 (322)
192 2qp9_X Vacuolar protein sortin 92.9 0.2 6.7E-06 51.4 7.7 20 188-207 84-103 (355)
193 2qby_B CDC6 homolog 3, cell di 92.6 0.25 8.5E-06 51.1 8.3 18 189-206 46-63 (384)
194 1uaa_A REP helicase, protein ( 92.6 0.074 2.5E-06 59.9 4.5 62 173-236 2-70 (673)
195 3hr8_A Protein RECA; alpha and 92.6 0.42 1.4E-05 48.8 9.6 89 188-299 61-152 (356)
196 1pjr_A PCRA; DNA repair, DNA r 92.6 0.12 4.2E-06 58.5 6.2 62 172-235 10-78 (724)
197 2i1q_A DNA repair and recombin 92.6 0.37 1.3E-05 48.6 9.2 96 188-299 98-217 (322)
198 2qz4_A Paraplegin; AAA+, SPG7, 92.6 0.25 8.6E-06 47.9 7.7 19 188-206 39-57 (262)
199 1sxj_A Activator 1 95 kDa subu 92.5 0.25 8.5E-06 53.6 8.4 31 189-219 78-108 (516)
200 3bh0_A DNAB-like replicative h 92.4 0.94 3.2E-05 45.4 12.0 118 181-300 57-195 (315)
201 2qgz_A Helicase loader, putati 92.4 0.61 2.1E-05 46.7 10.5 18 188-205 152-169 (308)
202 2z4s_A Chromosomal replication 92.4 1.1 3.7E-05 47.3 12.9 18 189-206 131-148 (440)
203 4b4t_I 26S protease regulatory 92.3 0.18 6.2E-06 52.4 6.4 18 188-205 216-233 (437)
204 3b9p_A CG5977-PA, isoform A; A 92.3 0.35 1.2E-05 48.0 8.5 19 188-206 54-72 (297)
205 3u61_B DNA polymerase accessor 92.2 0.44 1.5E-05 48.0 9.3 14 286-299 105-118 (324)
206 4b4t_M 26S protease regulatory 92.1 0.27 9.2E-06 51.5 7.5 18 188-205 215-232 (434)
207 2w0m_A SSO2452; RECA, SSPF, un 92.0 1.5 5E-05 41.3 12.3 35 187-221 22-59 (235)
208 3u4q_A ATP-dependent helicase/ 91.9 0.16 5.5E-06 61.3 6.3 61 173-235 10-79 (1232)
209 3uk6_A RUVB-like 2; hexameric 91.7 0.79 2.7E-05 46.9 10.8 20 189-208 71-90 (368)
210 1sxj_D Activator 1 41 kDa subu 91.7 1.2 4.2E-05 45.1 12.1 17 189-205 59-75 (353)
211 4b4t_L 26S protease subunit RP 91.6 0.44 1.5E-05 50.0 8.5 19 188-206 215-233 (437)
212 3cf0_A Transitional endoplasmi 91.6 0.51 1.7E-05 47.0 8.8 22 188-209 49-70 (301)
213 3bgw_A DNAB-like replicative h 91.4 1.8 6E-05 45.7 13.1 42 181-222 186-234 (444)
214 2gno_A DNA polymerase III, gam 91.1 0.45 1.5E-05 47.5 7.7 16 190-205 20-35 (305)
215 2iut_A DNA translocase FTSK; n 91.0 0.64 2.2E-05 50.3 9.2 18 188-205 214-231 (574)
216 1sxj_B Activator 1 37 kDa subu 90.8 0.69 2.4E-05 46.3 8.9 16 190-205 44-59 (323)
217 1iqp_A RFCS; clamp loader, ext 90.8 0.64 2.2E-05 46.6 8.7 16 190-205 48-63 (327)
218 2zts_A Putative uncharacterize 90.7 1.8 6.3E-05 41.2 11.6 48 188-236 30-81 (251)
219 1vma_A Cell division protein F 90.6 3.4 0.00012 41.0 13.7 53 188-240 104-162 (306)
220 2bjv_A PSP operon transcriptio 90.6 0.25 8.6E-06 48.2 5.3 21 187-207 28-48 (265)
221 4b4t_H 26S protease regulatory 90.6 0.62 2.1E-05 48.9 8.4 18 188-205 243-260 (467)
222 3lda_A DNA repair protein RAD5 90.6 2.7 9.2E-05 43.5 13.3 97 188-300 178-287 (400)
223 3io5_A Recombination and repai 90.6 0.78 2.7E-05 45.6 8.6 87 190-299 30-124 (333)
224 4ddu_A Reverse gyrase; topoiso 90.5 0.43 1.5E-05 56.6 8.0 77 512-589 121-205 (1104)
225 3cmw_A Protein RECA, recombina 90.3 1.5 5.2E-05 53.7 12.5 89 188-299 732-823 (1706)
226 3hu3_A Transitional endoplasmi 90.3 1 3.5E-05 48.2 10.1 20 189-208 239-258 (489)
227 2zan_A Vacuolar protein sortin 90.3 0.61 2.1E-05 49.3 8.3 20 188-207 167-186 (444)
228 4b4t_K 26S protease regulatory 90.0 0.66 2.3E-05 48.5 8.0 18 188-205 206-223 (428)
229 2px0_A Flagellar biosynthesis 89.8 2.4 8.2E-05 42.0 11.7 33 188-220 105-141 (296)
230 2ehv_A Hypothetical protein PH 89.6 1.3 4.5E-05 42.2 9.6 35 187-221 29-67 (251)
231 3cmu_A Protein RECA, recombina 89.5 0.87 3E-05 56.5 9.7 95 182-299 1415-1518(2050)
232 3hjh_A Transcription-repair-co 89.4 0.98 3.3E-05 48.1 8.9 86 188-274 14-116 (483)
233 1t6n_A Probable ATP-dependent 89.3 1.9 6.4E-05 40.4 10.1 75 512-589 82-167 (220)
234 1jr3_A DNA polymerase III subu 89.2 0.83 2.8E-05 46.8 8.2 16 190-205 40-55 (373)
235 3t15_A Ribulose bisphosphate c 89.2 0.25 8.5E-06 49.2 4.0 17 189-205 37-53 (293)
236 3pfi_A Holliday junction ATP-d 89.1 0.58 2E-05 47.4 6.7 18 189-206 56-73 (338)
237 1pzn_A RAD51, DNA repair and r 88.8 2.2 7.5E-05 43.4 10.9 42 181-222 119-174 (349)
238 1w5s_A Origin recognition comp 88.7 1.1 3.9E-05 46.5 8.9 16 285-300 137-152 (412)
239 3cmu_A Protein RECA, recombina 88.3 2.9 9.9E-05 52.0 13.0 96 181-299 370-474 (2050)
240 1sxj_C Activator 1 40 kDa subu 88.0 1.3 4.4E-05 44.9 8.5 17 190-206 48-64 (340)
241 1q57_A DNA primase/helicase; d 87.7 3 0.0001 44.8 11.6 110 188-299 242-367 (503)
242 2eyq_A TRCF, transcription-rep 87.5 1.1 3.9E-05 53.3 8.7 77 512-588 652-733 (1151)
243 1ojl_A Transcriptional regulat 87.2 0.77 2.6E-05 45.8 6.2 19 188-206 25-43 (304)
244 2oxc_A Probable ATP-dependent 87.0 2.3 8E-05 40.1 9.2 80 504-588 84-174 (230)
245 1cr0_A DNA primase/helicase; R 86.9 5.1 0.00017 39.4 12.1 35 187-221 34-72 (296)
246 4fcw_A Chaperone protein CLPB; 86.9 1 3.4E-05 44.9 6.9 17 190-206 49-65 (311)
247 1w4r_A Thymidine kinase; type 86.9 1.6 5.4E-05 40.1 7.4 35 188-222 20-57 (195)
248 2qen_A Walker-type ATPase; unk 85.6 7.9 0.00027 38.7 13.0 31 175-205 17-48 (350)
249 4a74_A DNA repair and recombin 85.5 2.7 9.1E-05 39.4 8.8 35 188-222 25-68 (231)
250 2ce7_A Cell division protein F 85.5 1.4 4.6E-05 46.9 7.2 18 189-206 50-67 (476)
251 3ber_A Probable ATP-dependent 85.3 2.8 9.7E-05 40.1 8.9 74 511-588 110-194 (249)
252 3cmw_A Protein RECA, recombina 85.1 6.3 0.00022 48.3 13.5 96 181-299 370-474 (1706)
253 1nlf_A Regulatory protein REPA 85.0 3.8 0.00013 40.0 9.9 22 185-206 27-48 (279)
254 3bor_A Human initiation factor 84.6 2.3 7.8E-05 40.4 7.8 81 505-588 91-181 (237)
255 1oyw_A RECQ helicase, ATP-depe 84.6 1.7 5.9E-05 47.0 7.7 59 512-570 65-123 (523)
256 3cf2_A TER ATPase, transitiona 84.5 1.5 5.3E-05 49.6 7.4 18 189-206 239-256 (806)
257 2v1x_A ATP-dependent DNA helic 84.3 1.7 5.8E-05 47.8 7.6 59 512-570 84-144 (591)
258 2vhj_A Ntpase P4, P4; non- hyd 84.3 1.8 6.2E-05 43.1 7.0 20 187-206 122-141 (331)
259 1vec_A ATP-dependent RNA helic 83.8 3.9 0.00013 37.6 8.9 74 511-588 70-154 (206)
260 1ypw_A Transitional endoplasmi 83.7 1.8 6.2E-05 49.5 7.7 21 188-208 238-258 (806)
261 1xti_A Probable ATP-dependent 83.7 4.3 0.00015 41.5 10.1 81 505-588 69-160 (391)
262 3fe2_A Probable ATP-dependent 83.3 3.7 0.00013 39.0 8.7 73 512-588 102-184 (242)
263 3e70_C DPA, signal recognition 83.1 9.2 0.00031 38.3 11.8 52 285-348 210-261 (328)
264 2yhs_A FTSY, cell division pro 83.0 12 0.00041 39.6 13.0 33 190-222 295-331 (503)
265 1qvr_A CLPB protein; coiled co 82.6 4.5 0.00015 46.6 10.5 17 189-205 192-208 (854)
266 1r6b_X CLPA protein; AAA+, N-t 82.5 2.2 7.7E-05 48.5 7.9 18 188-205 207-224 (758)
267 1ls1_A Signal recognition part 82.3 19 0.00066 35.3 13.7 33 188-220 98-133 (295)
268 2jgn_A DBX, DDX3, ATP-dependen 82.0 3.1 0.00011 37.8 7.3 73 212-292 45-120 (185)
269 2p6n_A ATP-dependent RNA helic 81.9 5.4 0.00019 36.4 8.9 73 212-292 53-128 (191)
270 2fna_A Conserved hypothetical 81.4 4.7 0.00016 40.5 9.2 30 175-205 18-47 (357)
271 2rb4_A ATP-dependent RNA helic 81.2 4.5 0.00015 36.2 8.0 73 212-292 33-108 (175)
272 1ixs_A Holliday junction DNA h 80.1 2.5 8.6E-05 30.6 4.6 38 8-45 17-59 (62)
273 2hjv_A ATP-dependent RNA helic 80.1 4.7 0.00016 35.6 7.6 74 212-293 34-110 (163)
274 2pl3_A Probable ATP-dependent 78.9 3.6 0.00012 38.9 6.9 72 512-588 97-179 (236)
275 1qde_A EIF4A, translation init 78.9 3.2 0.00011 38.7 6.5 81 503-588 73-163 (224)
276 2ffh_A Protein (FFH); SRP54, s 78.5 27 0.00092 36.2 13.8 52 189-240 99-156 (425)
277 2gxq_A Heat resistant RNA depe 78.3 5.9 0.0002 36.3 8.1 73 512-588 72-152 (207)
278 3cf2_A TER ATPase, transitiona 78.2 7 0.00024 44.2 9.8 21 189-209 512-532 (806)
279 1q0u_A Bstdead; DEAD protein, 77.5 2.9 9.9E-05 39.0 5.6 81 504-588 64-158 (219)
280 1fuk_A Eukaryotic initiation f 77.5 5.6 0.00019 35.1 7.3 73 212-292 29-104 (165)
281 1xjc_A MOBB protein homolog; s 77.4 2.3 8E-05 38.0 4.6 14 190-203 6-19 (169)
282 1t5i_A C_terminal domain of A 77.3 6.3 0.00022 35.2 7.6 90 212-315 30-122 (172)
283 2r8r_A Sensor protein; KDPD, P 77.3 8.4 0.00029 36.1 8.5 19 188-206 5-24 (228)
284 3hws_A ATP-dependent CLP prote 77.2 4.7 0.00016 41.1 7.6 21 188-208 51-71 (363)
285 1qvr_A CLPB protein; coiled co 76.5 3.9 0.00013 47.1 7.4 16 190-205 590-605 (854)
286 2j37_W Signal recognition part 76.4 7.6 0.00026 41.4 9.0 106 190-295 103-224 (504)
287 3iuy_A Probable ATP-dependent 76.4 4.3 0.00015 38.1 6.5 73 512-588 94-175 (228)
288 1e9r_A Conjugal transfer prote 76.3 1.6 5.6E-05 45.9 3.8 40 188-227 53-95 (437)
289 3b85_A Phosphate starvation-in 76.1 2.3 7.9E-05 39.6 4.4 35 171-205 5-39 (208)
290 3eaq_A Heat resistant RNA depe 75.7 6.5 0.00022 36.5 7.5 74 211-292 29-105 (212)
291 2oap_1 GSPE-2, type II secreti 75.5 3.4 0.00012 44.3 6.1 32 173-204 244-276 (511)
292 2xxa_A Signal recognition part 73.7 27 0.00094 36.3 12.4 42 190-231 102-149 (433)
293 3ly5_A ATP-dependent RNA helic 73.6 11 0.00038 36.2 8.9 73 512-588 126-209 (262)
294 1rj9_A FTSY, signal recognitio 73.4 32 0.0011 33.9 12.2 33 188-220 102-137 (304)
295 1wrb_A DJVLGB; RNA helicase, D 72.7 10 0.00036 36.0 8.4 73 512-588 100-182 (253)
296 3gk5_A Uncharacterized rhodane 72.6 4.4 0.00015 33.0 4.8 44 504-547 47-90 (108)
297 1fuu_A Yeast initiation factor 72.0 14 0.00046 37.7 9.6 81 503-588 80-170 (394)
298 2i4i_A ATP-dependent RNA helic 71.0 10 0.00035 39.1 8.5 73 212-292 275-350 (417)
299 3b9q_A Chloroplast SRP recepto 71.0 81 0.0028 30.8 14.8 33 188-220 100-135 (302)
300 1j8m_F SRP54, signal recogniti 70.9 14 0.00048 36.4 8.9 51 190-240 100-156 (297)
301 3foj_A Uncharacterized protein 70.8 4.6 0.00016 32.2 4.5 37 511-547 55-91 (100)
302 3pxi_A Negative regulator of g 70.8 4.6 0.00016 45.8 6.1 16 190-205 523-538 (758)
303 3nwn_A Kinesin-like protein KI 70.4 2.6 8.8E-05 42.9 3.4 26 181-206 96-123 (359)
304 1s2m_A Putative ATP-dependent 69.9 15 0.0005 37.6 9.3 81 504-588 81-171 (400)
305 3iwh_A Rhodanese-like domain p 69.7 4.8 0.00016 32.5 4.3 38 510-547 54-91 (103)
306 3a8t_A Adenylate isopentenyltr 69.7 1.8 6.2E-05 43.5 2.1 19 189-207 41-59 (339)
307 1yks_A Genome polyprotein [con 69.1 5.9 0.0002 41.6 6.1 70 212-291 176-245 (440)
308 2j0s_A ATP-dependent RNA helic 69.1 18 0.00061 37.1 9.8 75 510-588 103-187 (410)
309 3eme_A Rhodanese-like domain p 68.8 5.1 0.00017 32.2 4.3 37 511-547 55-91 (103)
310 2r44_A Uncharacterized protein 67.9 3 0.0001 41.9 3.3 23 183-205 41-63 (331)
311 1c9k_A COBU, adenosylcobinamid 67.7 2.6 9E-05 38.1 2.5 34 191-225 2-35 (180)
312 2db3_A ATP-dependent RNA helic 67.5 9.6 0.00033 39.8 7.3 73 512-588 129-211 (434)
313 3fmo_B ATP-dependent RNA helic 66.9 7.2 0.00025 38.5 5.9 79 503-588 153-243 (300)
314 1gku_B Reverse gyrase, TOP-RG; 66.9 11 0.00037 44.5 8.2 75 512-588 99-183 (1054)
315 3i32_A Heat resistant RNA depe 66.8 14 0.00046 36.5 7.8 73 212-292 27-102 (300)
316 1bg2_A Kinesin; motor protein, 66.7 3.3 0.00011 41.5 3.2 26 181-206 69-96 (325)
317 3nbx_X ATPase RAVA; AAA+ ATPas 66.7 2.6 9E-05 45.0 2.7 27 180-206 33-59 (500)
318 2og2_A Putative signal recogni 66.1 85 0.0029 31.6 13.7 33 188-220 157-192 (359)
319 1t5c_A CENP-E protein, centrom 66.0 3.6 0.00012 41.6 3.4 26 181-206 69-96 (349)
320 2v6i_A RNA helicase; membrane, 65.9 8.3 0.00028 40.3 6.4 56 212-268 170-225 (431)
321 2nr8_A Kinesin-like protein KI 65.9 3.6 0.00012 41.7 3.4 26 181-206 95-122 (358)
322 3gbj_A KIF13B protein; kinesin 65.7 3.7 0.00013 41.6 3.5 26 181-206 84-111 (354)
323 1hv8_A Putative ATP-dependent 65.7 14 0.00048 37.0 8.1 74 212-293 237-313 (367)
324 3b6u_A Kinesin-like protein KI 65.7 3.7 0.00013 41.9 3.4 26 181-206 93-120 (372)
325 3crm_A TRNA delta(2)-isopenten 65.6 7.1 0.00024 38.9 5.4 20 190-209 7-26 (323)
326 3dc4_A Kinesin-like protein NO 65.2 3.2 0.00011 41.9 2.8 25 181-205 86-112 (344)
327 1wv9_A Rhodanese homolog TT165 65.1 8.5 0.00029 30.2 4.9 35 513-547 54-88 (94)
328 2vvg_A Kinesin-2; motor protei 64.7 3.7 0.00013 41.5 3.2 26 181-206 81-108 (350)
329 2gza_A Type IV secretion syste 64.7 3.1 0.00011 42.4 2.8 21 185-205 172-192 (361)
330 1x88_A Kinesin-like protein KI 64.7 3.6 0.00012 41.8 3.2 26 181-206 80-107 (359)
331 1p9r_A General secretion pathw 64.6 4 0.00014 42.5 3.6 30 175-204 152-183 (418)
332 2zfi_A Kinesin-like protein KI 64.6 3.7 0.00013 41.8 3.2 26 181-206 81-108 (366)
333 3eiq_A Eukaryotic initiation f 64.6 22 0.00077 36.3 9.5 83 503-588 99-191 (414)
334 3foz_A TRNA delta(2)-isopenten 64.5 2.9 9.9E-05 41.4 2.3 18 190-207 12-29 (316)
335 3exa_A TRNA delta(2)-isopenten 64.4 3 0.0001 41.3 2.4 18 190-207 5-22 (322)
336 2y65_A Kinesin, kinesin heavy 64.0 3.9 0.00013 41.6 3.2 26 181-206 76-103 (365)
337 1wp9_A ATP-dependent RNA helic 63.8 15 0.0005 38.4 8.1 73 512-589 52-134 (494)
338 1v8k_A Kinesin-like protein KI 63.8 3.8 0.00013 42.3 3.1 26 181-206 146-173 (410)
339 1ofh_A ATP-dependent HSL prote 63.4 3.7 0.00013 40.5 2.9 19 188-206 50-68 (310)
340 2l82_A Designed protein OR32; 63.4 30 0.001 27.5 7.4 86 515-600 5-99 (162)
341 1q02_A Sequestosome 1; helical 63.3 7.5 0.00026 26.6 3.4 36 9-44 11-48 (52)
342 1lv7_A FTSH; alpha/beta domain 63.2 3.6 0.00012 39.5 2.8 19 188-206 45-63 (257)
343 3lre_A Kinesin-like protein KI 63.0 3.8 0.00013 41.5 3.0 26 181-206 97-124 (355)
344 1goj_A Kinesin, kinesin heavy 63.0 3.8 0.00013 41.6 2.9 25 182-206 73-99 (355)
345 2wbe_C Bipolar kinesin KRP-130 62.8 3.9 0.00013 41.8 3.0 26 181-206 92-119 (373)
346 3cob_A Kinesin heavy chain-lik 62.4 3.8 0.00013 41.7 2.8 26 181-206 71-98 (369)
347 1u0j_A DNA replication protein 62.3 4.5 0.00015 39.1 3.2 42 161-206 75-122 (267)
348 1kgd_A CASK, peripheral plasma 62.2 3 0.0001 37.6 1.9 19 187-205 4-22 (180)
349 2pt7_A CAG-ALFA; ATPase, prote 61.9 3.7 0.00013 41.3 2.7 19 186-204 169-187 (330)
350 1tue_A Replication protein E1; 61.6 5.9 0.0002 36.6 3.6 46 156-205 26-75 (212)
351 3dkp_A Probable ATP-dependent 61.5 4.3 0.00015 38.5 3.0 74 512-588 98-183 (245)
352 2heh_A KIF2C protein; kinesin, 61.3 4.1 0.00014 41.7 2.8 26 181-206 126-153 (387)
353 4ag6_A VIRB4 ATPase, type IV s 61.2 4.4 0.00015 41.8 3.2 38 187-224 34-74 (392)
354 3vaa_A Shikimate kinase, SK; s 61.0 3.2 0.00011 38.1 1.9 21 187-207 24-44 (199)
355 2owm_A Nckin3-434, related to 60.9 4.6 0.00016 42.3 3.2 25 182-206 129-155 (443)
356 2h58_A Kinesin-like protein KI 60.8 5.2 0.00018 40.1 3.4 27 180-206 71-99 (330)
357 2v3c_C SRP54, signal recogniti 60.7 23 0.00078 36.9 8.5 32 189-220 100-134 (432)
358 2eyu_A Twitching motility prot 60.5 2.8 9.4E-05 40.6 1.3 20 186-205 23-42 (261)
359 2qmh_A HPR kinase/phosphorylas 60.1 3 0.0001 38.3 1.4 18 188-205 34-51 (205)
360 4a14_A Kinesin, kinesin-like p 60.1 5.2 0.00018 40.4 3.3 25 181-205 75-101 (344)
361 1um8_A ATP-dependent CLP prote 59.9 5 0.00017 41.1 3.3 20 188-207 72-91 (376)
362 1lvg_A Guanylate kinase, GMP k 59.8 3.3 0.00011 38.1 1.7 19 187-205 3-21 (198)
363 3trf_A Shikimate kinase, SK; a 59.7 3.4 0.00012 37.2 1.8 20 188-207 5-24 (185)
364 2l8b_A Protein TRAI, DNA helic 59.2 5 0.00017 36.1 2.7 53 176-228 37-95 (189)
365 2ze6_A Isopentenyl transferase 59.2 3.8 0.00013 39.4 2.1 16 190-205 3-18 (253)
366 4a2p_A RIG-I, retinoic acid in 59.1 12 0.00039 40.4 6.2 74 512-589 55-139 (556)
367 3flh_A Uncharacterized protein 59.0 7.4 0.00025 32.5 3.7 43 505-547 64-108 (124)
368 1sky_E F1-ATPase, F1-ATP synth 58.7 26 0.00087 36.8 8.4 21 185-205 148-168 (473)
369 3tbk_A RIG-I helicase domain; 58.6 9.4 0.00032 41.1 5.4 73 512-588 52-135 (555)
370 2kna_A Baculoviral IAP repeat- 58.3 7.8 0.00027 31.4 3.5 40 10-49 29-75 (104)
371 3tau_A Guanylate kinase, GMP k 58.1 3.9 0.00013 37.9 1.9 20 187-206 7-26 (208)
372 4etp_A Kinesin-like protein KA 58.0 5.4 0.00019 41.2 3.1 26 181-206 132-159 (403)
373 1zp6_A Hypothetical protein AT 58.0 5.3 0.00018 36.1 2.8 21 187-207 8-28 (191)
374 1qhx_A CPT, protein (chloramph 57.1 3.7 0.00013 36.6 1.5 20 188-207 3-22 (178)
375 1f9v_A Kinesin-like protein KA 57.0 4.1 0.00014 41.2 1.9 26 181-206 76-103 (347)
376 1kag_A SKI, shikimate kinase I 56.8 6.4 0.00022 34.9 3.1 20 188-207 4-23 (173)
377 3u06_A Protein claret segregat 56.8 5.8 0.0002 41.0 3.1 27 180-206 129-157 (412)
378 4a2q_A RIG-I, retinoic acid in 56.7 17 0.00059 41.3 7.4 73 512-588 296-379 (797)
379 2wv9_A Flavivirin protease NS2 56.6 13 0.00045 41.3 6.1 56 212-268 409-464 (673)
380 3fht_A ATP-dependent RNA helic 56.4 22 0.00076 36.2 7.7 73 212-292 265-340 (412)
381 1hqc_A RUVB; extended AAA-ATPa 56.3 5.5 0.00019 39.6 2.8 17 189-205 39-55 (324)
382 1ry6_A Internal kinesin; kines 56.0 5.6 0.00019 40.3 2.8 23 184-206 78-103 (360)
383 3ice_A Transcription terminati 55.4 99 0.0034 31.6 11.7 31 175-205 158-191 (422)
384 3g5j_A Putative ATP/GTP bindin 55.1 5.7 0.0002 33.5 2.3 36 513-548 90-126 (134)
385 1y63_A LMAJ004144AAA protein; 55.0 4.2 0.00014 36.8 1.5 20 188-207 10-29 (184)
386 3d3q_A TRNA delta(2)-isopenten 54.6 5.2 0.00018 40.2 2.2 17 190-206 9-25 (340)
387 3lw7_A Adenylate kinase relate 54.5 4.2 0.00014 36.0 1.4 18 190-207 3-20 (179)
388 3bfn_A Kinesin-like protein KI 54.5 5.9 0.0002 40.6 2.6 24 183-206 92-117 (388)
389 3ipz_A Monothiol glutaredoxin- 54.4 26 0.0009 28.3 6.2 60 505-564 10-75 (109)
390 3vkg_A Dynein heavy chain, cyt 54.1 13 0.00043 48.7 6.0 51 156-208 872-926 (3245)
391 2r62_A Cell division protease 54.1 3.6 0.00012 39.8 0.9 19 188-206 44-62 (268)
392 4dzz_A Plasmid partitioning pr 53.7 25 0.00085 31.8 6.8 31 261-296 55-85 (206)
393 2qor_A Guanylate kinase; phosp 53.7 5.1 0.00017 36.9 1.9 19 187-205 11-29 (204)
394 3b6e_A Interferon-induced heli 53.7 10 0.00035 34.8 4.0 55 512-570 82-140 (216)
395 3pey_A ATP-dependent RNA helic 53.4 27 0.00092 35.3 7.7 78 212-297 242-322 (395)
396 3nwj_A ATSK2; P loop, shikimat 53.4 7.5 0.00026 37.2 3.1 24 186-209 46-69 (250)
397 3iij_A Coilin-interacting nucl 53.4 5.7 0.00019 35.6 2.1 21 187-207 10-30 (180)
398 2fsf_A Preprotein translocase 53.3 19 0.00066 40.5 6.7 70 511-586 114-200 (853)
399 3t0q_A AGR253WP; kinesin, alph 53.3 5.5 0.00019 40.3 2.1 26 181-206 77-104 (349)
400 2j41_A Guanylate kinase; GMP, 53.1 4.2 0.00014 37.3 1.2 19 187-205 5-23 (207)
401 3ney_A 55 kDa erythrocyte memb 53.0 5.4 0.00018 36.7 1.9 19 187-205 18-36 (197)
402 1tf7_A KAIC; homohexamer, hexa 52.7 27 0.00093 37.4 7.8 50 187-237 280-332 (525)
403 2z0m_A 337AA long hypothetical 52.7 29 0.00098 34.2 7.6 72 512-588 56-137 (337)
404 2jlq_A Serine protease subunit 52.6 16 0.00054 38.4 5.8 56 212-268 187-242 (451)
405 2v9p_A Replication protein E1; 52.3 4.7 0.00016 39.9 1.5 35 187-222 125-160 (305)
406 3eph_A TRNA isopentenyltransfe 52.2 5.8 0.0002 40.8 2.1 16 191-206 5-20 (409)
407 3tr0_A Guanylate kinase, GMP k 52.1 5.5 0.00019 36.4 1.9 19 187-205 6-24 (205)
408 1tf5_A Preprotein translocase 52.0 23 0.00077 40.0 7.0 70 511-586 123-209 (844)
409 3a00_A Guanylate kinase, GMP k 51.9 5.4 0.00018 36.1 1.7 17 189-205 2-18 (186)
410 2rep_A Kinesin-like protein KI 51.7 5.9 0.0002 40.4 2.1 26 181-206 107-134 (376)
411 3zyw_A Glutaredoxin-3; metal b 51.6 25 0.00086 28.6 5.6 52 506-557 9-66 (111)
412 2ewv_A Twitching motility prot 51.1 4.7 0.00016 41.3 1.3 19 187-205 135-153 (372)
413 2ykg_A Probable ATP-dependent 51.0 16 0.00055 40.7 5.8 73 513-589 62-145 (696)
414 1kht_A Adenylate kinase; phosp 50.8 5.4 0.00019 35.9 1.5 19 188-206 3-21 (192)
415 2c9o_A RUVB-like 1; hexameric 50.6 5.6 0.00019 42.0 1.8 18 188-205 63-80 (456)
416 2oca_A DAR protein, ATP-depend 50.2 39 0.0013 35.8 8.6 92 213-317 347-441 (510)
417 4eun_A Thermoresistant glucoki 50.1 5.7 0.0002 36.4 1.6 19 187-205 28-46 (200)
418 1g8p_A Magnesium-chelatase 38 50.0 8.2 0.00028 38.8 2.9 19 188-206 45-63 (350)
419 1z6g_A Guanylate kinase; struc 50.0 6.8 0.00023 36.6 2.1 20 186-205 21-40 (218)
420 4gp7_A Metallophosphoesterase; 49.9 4.9 0.00017 35.9 1.0 19 188-206 9-27 (171)
421 4akg_A Glutathione S-transfera 49.9 16 0.00053 47.3 5.9 52 156-209 889-944 (2695)
422 2x8a_A Nuclear valosin-contain 49.7 8.9 0.0003 37.3 3.0 17 189-205 45-61 (274)
423 1ixz_A ATP-dependent metallopr 49.6 8.5 0.00029 36.7 2.8 18 189-206 50-67 (254)
424 3jvv_A Twitching mobility prot 49.6 5.1 0.00018 40.7 1.3 18 188-205 123-140 (356)
425 1tf7_A KAIC; homohexamer, hexa 49.6 50 0.0017 35.3 9.2 34 187-220 38-75 (525)
426 2yan_A Glutaredoxin-3; oxidore 49.6 30 0.001 27.6 5.8 56 511-566 15-76 (105)
427 3jux_A Protein translocase sub 49.5 25 0.00085 39.2 6.6 56 213-268 474-530 (822)
428 1c4o_A DNA nucleotide excision 49.2 35 0.0012 37.8 8.1 79 212-298 438-519 (664)
429 1gmx_A GLPE protein; transfera 49.0 13 0.00044 30.0 3.5 37 511-547 57-94 (108)
430 1nij_A Hypothetical protein YJ 48.7 11 0.00037 37.6 3.5 32 191-222 7-39 (318)
431 1g41_A Heat shock protein HSLU 48.6 9.5 0.00032 39.9 3.1 19 188-206 50-68 (444)
432 2d7d_A Uvrabc system protein B 48.5 35 0.0012 37.8 7.9 79 212-298 444-525 (661)
433 1wgl_A TOLL-interacting protei 48.5 34 0.0012 24.3 5.0 49 3-51 4-54 (59)
434 1ex7_A Guanylate kinase; subst 48.3 6.7 0.00023 35.7 1.7 16 189-204 2-17 (186)
435 1ly1_A Polynucleotide kinase; 48.1 6.1 0.00021 35.1 1.4 18 190-207 4-21 (181)
436 3kb2_A SPBC2 prophage-derived 48.0 6.1 0.00021 34.9 1.4 16 190-205 3-18 (173)
437 1knq_A Gluconate kinase; ALFA/ 48.0 5.3 0.00018 35.5 1.0 19 188-206 8-26 (175)
438 2bdt_A BH3686; alpha-beta prot 47.5 10 0.00035 34.2 2.9 18 190-207 4-21 (189)
439 2r2a_A Uncharacterized protein 47.5 5.9 0.0002 36.5 1.2 17 190-206 7-23 (199)
440 1znw_A Guanylate kinase, GMP k 47.1 7.3 0.00025 35.9 1.8 22 184-205 16-37 (207)
441 1nkt_A Preprotein translocase 46.6 32 0.0011 39.1 7.1 53 512-570 152-208 (922)
442 3cm0_A Adenylate kinase; ATP-b 46.0 5.7 0.00019 35.7 0.8 21 187-207 3-23 (186)
443 1wik_A Thioredoxin-like protei 45.9 44 0.0015 26.8 6.3 54 512-565 14-73 (109)
444 2whx_A Serine protease/ntpase/ 45.4 28 0.00096 38.2 6.5 56 212-268 354-409 (618)
445 1iy2_A ATP-dependent metallopr 45.4 11 0.00037 36.6 2.8 18 189-206 74-91 (278)
446 3hix_A ALR3790 protein; rhodan 45.4 16 0.00055 29.3 3.5 36 512-547 52-88 (106)
447 1s96_A Guanylate kinase, GMP k 45.0 7.7 0.00026 36.3 1.6 21 185-205 13-33 (219)
448 3lnc_A Guanylate kinase, GMP k 45.0 7.8 0.00027 36.4 1.7 19 187-205 26-44 (231)
449 1zd8_A GTP:AMP phosphotransfer 44.9 12 0.00041 35.0 3.0 21 188-208 7-27 (227)
450 3nhv_A BH2092 protein; alpha-b 44.7 18 0.00061 31.1 3.9 36 512-547 72-109 (144)
451 1f2t_A RAD50 ABC-ATPase; DNA d 44.7 7.6 0.00026 33.7 1.4 15 190-204 25-39 (149)
452 1tq1_A AT5G66040, senescence-a 44.4 20 0.00068 30.0 4.1 36 512-547 82-118 (129)
453 1gvn_B Zeta; postsegregational 44.1 11 0.00037 37.0 2.6 18 189-206 34-51 (287)
454 3f9v_A Minichromosome maintena 44.1 7.6 0.00026 42.6 1.6 17 190-206 329-345 (595)
455 3i5x_A ATP-dependent RNA helic 44.0 42 0.0014 36.1 7.7 75 212-294 338-418 (563)
456 1via_A Shikimate kinase; struc 43.9 9.3 0.00032 33.9 1.9 19 189-207 5-23 (175)
457 1in4_A RUVB, holliday junction 43.8 8.5 0.00029 38.6 1.8 18 189-206 52-69 (334)
458 3sqw_A ATP-dependent RNA helic 43.8 43 0.0015 36.3 7.7 75 212-294 287-367 (579)
459 2yjt_D ATP-dependent RNA helic 49.5 4.9 0.00017 35.7 0.0 73 212-292 29-104 (170)
460 3c8u_A Fructokinase; YP_612366 43.5 7.4 0.00025 35.9 1.2 18 188-205 22-39 (208)
461 2c95_A Adenylate kinase 1; tra 43.5 12 0.00041 33.7 2.7 22 187-208 8-29 (196)
462 3uie_A Adenylyl-sulfate kinase 43.4 7.6 0.00026 35.5 1.3 32 173-205 11-42 (200)
463 3o8b_A HCV NS3 protease/helica 43.3 30 0.001 38.1 6.2 53 212-268 395-447 (666)
464 3kta_A Chromosome segregation 43.3 8.5 0.00029 34.4 1.6 16 190-205 28-43 (182)
465 1zu4_A FTSY; GTPase, signal re 43.2 11 0.00036 37.7 2.4 32 189-220 106-140 (320)
466 2fsx_A RV0390, COG0607: rhodan 42.9 25 0.00085 30.2 4.5 36 512-547 80-116 (148)
467 2rhm_A Putative kinase; P-loop 42.8 7.7 0.00026 35.0 1.2 19 188-206 5-23 (193)
468 3p32_A Probable GTPase RV1496/ 42.5 79 0.0027 31.7 9.0 31 190-220 81-114 (355)
469 2z83_A Helicase/nucleoside tri 42.5 17 0.00058 38.2 4.0 56 212-268 189-244 (459)
470 3t61_A Gluconokinase; PSI-biol 42.3 8.3 0.00028 35.2 1.4 17 189-205 19-35 (202)
471 2ipc_A Preprotein translocase 42.3 36 0.0012 38.8 6.6 55 511-571 119-177 (997)
472 1tev_A UMP-CMP kinase; ploop, 42.2 7.5 0.00026 35.1 1.0 20 188-207 3-22 (196)
473 3gx8_A Monothiol glutaredoxin- 41.9 54 0.0018 27.0 6.3 53 505-557 8-69 (121)
474 1qxn_A SUD, sulfide dehydrogen 41.9 20 0.00068 30.5 3.7 37 511-547 81-118 (137)
475 2iyv_A Shikimate kinase, SK; t 41.6 12 0.00042 33.3 2.4 19 189-207 3-21 (184)
476 3dl0_A Adenylate kinase; phosp 41.5 12 0.0004 34.6 2.3 18 190-207 2-19 (216)
477 1zuh_A Shikimate kinase; alpha 41.5 11 0.00037 33.2 1.9 21 189-209 8-28 (168)
478 2dhy_A CUE domain-containing p 41.3 33 0.0011 25.1 4.1 44 5-49 15-61 (67)
479 1m7g_A Adenylylsulfate kinase; 41.2 12 0.00039 34.6 2.2 31 174-205 12-42 (211)
480 1ye8_A Protein THEP1, hypothet 41.1 9.9 0.00034 34.1 1.7 16 190-205 2-17 (178)
481 3qf7_A RAD50; ABC-ATPase, ATPa 41.0 8.8 0.0003 39.1 1.4 16 190-205 25-40 (365)
482 3k1j_A LON protease, ATP-depen 41.0 15 0.00053 40.2 3.5 24 184-207 56-79 (604)
483 2bwj_A Adenylate kinase 5; pho 40.9 11 0.00037 34.2 1.9 21 187-207 11-31 (199)
484 3fb4_A Adenylate kinase; psych 40.9 11 0.00038 34.8 2.0 18 190-207 2-19 (216)
485 3pxg_A Negative regulator of g 40.9 18 0.00062 38.2 3.9 38 5-44 28-65 (468)
486 1aky_A Adenylate kinase; ATP:A 40.8 13 0.00045 34.4 2.5 20 188-207 4-23 (220)
487 3a4m_A L-seryl-tRNA(SEC) kinas 40.2 15 0.0005 35.3 2.8 18 189-206 5-22 (260)
488 3asz_A Uridine kinase; cytidin 39.9 9 0.00031 35.2 1.2 18 188-205 6-23 (211)
489 3l9o_A ATP-dependent RNA helic 39.9 29 0.001 41.0 5.8 64 512-586 227-296 (1108)
490 1zak_A Adenylate kinase; ATP:A 39.8 13 0.00043 34.6 2.2 20 188-207 5-24 (222)
491 3be4_A Adenylate kinase; malar 39.3 15 0.00052 33.9 2.7 21 188-208 5-25 (217)
492 1e6c_A Shikimate kinase; phosp 39.2 15 0.0005 32.3 2.5 19 189-207 3-21 (173)
493 4gl2_A Interferon-induced heli 38.9 10 0.00036 42.3 1.8 73 512-588 56-144 (699)
494 2v54_A DTMP kinase, thymidylat 38.9 11 0.00037 34.3 1.6 21 187-207 3-23 (204)
495 2p5t_B PEZT; postsegregational 38.7 9.9 0.00034 36.3 1.3 19 189-207 33-51 (253)
496 1nks_A Adenylate kinase; therm 38.7 11 0.00038 33.8 1.6 17 190-206 3-19 (194)
497 2pez_A Bifunctional 3'-phospho 38.6 9.5 0.00032 34.0 1.1 19 187-205 4-22 (179)
498 1cs1_A CGS, protein (cystathio 38.5 1.2E+02 0.0043 30.3 9.9 98 198-300 74-180 (386)
499 4akg_A Glutathione S-transfera 38.4 16 0.00056 47.1 3.5 20 186-205 1265-1284(2695)
500 1ak2_A Adenylate kinase isoenz 38.3 13 0.00045 34.8 2.2 22 188-209 16-37 (233)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.9e-64 Score=560.65 Aligned_cols=398 Identities=35% Similarity=0.596 Sum_probs=333.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHH
Q 005741 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 154 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l 233 (679)
..+|.+.+...|++.|||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++...+++|||+|+++|+.|+.+.+
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l 104 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVL 104 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 45789999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcCCCCcHHHHH---HH--HcCCccEEEEChHHHH---HHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 234 SKHGVTACFLGSGQPDNKVEQ---KA--LRGMYSIIYVCPETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~Ili~Tp~~l~---~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.++++.+..+.++........ .. ..+.++|+|+||+++. .++..+.....+.++.+|||||||++.+||++|
T Consensus 105 ~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~df 184 (591)
T 2v1x_A 105 KQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDF 184 (591)
T ss_dssp HHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTC
T ss_pred HhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccccc
Confidence 999999998888776543221 11 2467899999999985 455555566677899999999999999999999
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
++.|..+..+...++ +.|+++||||++..+..++..++++. ....+...+.++++.+.+........
T Consensus 185 r~~~~~l~~l~~~~~---------~~~ii~lSAT~~~~v~~~i~~~l~~~-~~~~~~~~~~r~nl~~~v~~~~~~~~--- 251 (591)
T 2v1x_A 185 RPDYKALGILKRQFP---------NASLIGLTATATNHVLTDAQKILCIE-KCFTFTASFNRPNLYYEVRQKPSNTE--- 251 (591)
T ss_dssp CGGGGGGGHHHHHCT---------TSEEEEEESSCCHHHHHHHHHHTTCC-SCEEEECCCCCTTEEEEEEECCSSHH---
T ss_pred HHHHHHHHHHHHhCC---------CCcEEEEecCCCHHHHHHHHHHhCCC-CcEEEecCCCCcccEEEEEeCCCcHH---
Confidence 999998877766554 78999999999999999999999886 45566778889999888765322110
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005741 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
.
T Consensus 252 -~------------------------------------------------------------------------------ 252 (591)
T 2v1x_A 252 -D------------------------------------------------------------------------------ 252 (591)
T ss_dssp -H------------------------------------------------------------------------------
T ss_pred -H------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005741 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
+...+++.+.+.....++||||++++.++.+++.|...|+.+..|||+
T Consensus 253 --------------------------------~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 253 --------------------------------FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp --------------------------------HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred --------------------------------HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 112233333333346799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCccC
Q 005741 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL 625 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~~ 625 (679)
|++++|..+++.|++|+.+|||||+++++|||+|+|++||+|++|.|++.|+||+|||||+|++|.|++||++.|...+.
T Consensus 301 l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877654331
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCC-CCCCCC
Q 005741 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLYVNF 678 (679)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c-~~c~~~ 678 (679)
...... ......+..+..||.++..|||+.|.+||||.+.+..| ..||||
T Consensus 381 ~~~~~~---~~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~~~Cd~C 431 (591)
T 2v1x_A 381 SMVVME---NVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNC 431 (591)
T ss_dssp HHTTTS---TTHHHHHHHHHHHHTCSSSCHHHHHHHHHTCCC---CCCSCBHHH
T ss_pred HHHhhh---hhhHHHHHHHHHHHhcccccHHHHHHHHcCCCCCccccCCCCCCC
Confidence 110000 12245677788999889999999999999999865556 468777
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.6e-62 Score=537.33 Aligned_cols=390 Identities=37% Similarity=0.613 Sum_probs=330.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHh
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.+.+.+...|++.|||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++...+++|||+|+++|+.||.+.+.+
T Consensus 8 ~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHH
Confidence 67888999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHH
Q 005741 236 HGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
+++.+..++++...... ......+.++|+|+||+++..... ...+...++++|||||||++.+||++|++.|..+
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~--~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l 165 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF--LEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL 165 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTH--HHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGG
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHH--HHHHhhCCCCEEEEeCccccCcCCCccHHHHHHH
Confidence 99999988877664332 233445678999999999864221 3345567899999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHH
Q 005741 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392 (679)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~ 392 (679)
..++..++ +.|+++||||++..+..++..++++.. ..++...+.++++.+.+.....
T Consensus 166 ~~l~~~~~---------~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~~l~~~v~~~~~------------- 222 (523)
T 1oyw_A 166 GQLRQRFP---------TLPFMALTATADDTTRQDIVRLLGLND-PLIQISSFDRPNIRYMLMEKFK------------- 222 (523)
T ss_dssp GGHHHHCT---------TSCEEEEESCCCHHHHHHHHHHHTCCS-CEEEECCCCCTTEEEEEEECSS-------------
T ss_pred HHHHHhCC---------CCCEEEEeCCCCHHHHHHHHHHhCCCC-CeEEeCCCCCCceEEEEEeCCC-------------
Confidence 87776654 689999999999999999999998864 4566677888888877654211
Q ss_pred HHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccc
Q 005741 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVAC 472 (679)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (679)
T Consensus 223 -------------------------------------------------------------------------------- 222 (523)
T 1oyw_A 223 -------------------------------------------------------------------------------- 222 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005741 473 GEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
+...+++.+.+. ...++||||++++.++.+++.|...|+.+..|||+|++++|+
T Consensus 223 -------------------------~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~ 276 (523)
T 1oyw_A 223 -------------------------PLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA 276 (523)
T ss_dssp -------------------------HHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred -------------------------HHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHH
Confidence 111122222222 356999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc---CCCCC
Q 005741 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRR 629 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~---~~~~~ 629 (679)
.+++.|++|+.+|||||+++++|||+|+|++||+|++|+|+++|+||+|||||.|++|.|++|+++.|...+ +....
T Consensus 277 ~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~ 356 (523)
T 1oyw_A 277 DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 356 (523)
T ss_dssp HHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999987765432 22222
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCCCCCCC
Q 005741 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYVNF 678 (679)
Q Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~~c~~~ 678 (679)
..+........+..|..|| .+..|||+.|.+||||.+. ..|+.||||
T Consensus 357 ~~~~~~~~~~~l~~m~~~~-~~~~crr~~l~~~f~e~~~-~~c~~cd~c 403 (523)
T 1oyw_A 357 QGQLQDIERHKLNAMGAFA-EAQTCRRLVLLNYFGEGRQ-EPCGNCDIC 403 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHH-TCSSCHHHHHHHHTTCCCC-SCCSCBHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-hccccHhhhhHhhcCCCCC-CCCCCCCCC
Confidence 3333445567788899999 5689999999999999974 568889988
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-53 Score=458.69 Aligned_cols=330 Identities=18% Similarity=0.281 Sum_probs=264.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----------cCCeEEEEcCchH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLIS 224 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----------~~~~vLvl~Pt~~ 224 (679)
.+.+.+.+.|. .+||.+|+|+|.++|+.++.|+|+++++|||||||++|++|++. .++++|||+||++
T Consensus 62 ~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 62 DLRDIIIDNVN-KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 57788888887 46999999999999999999999999999999999999999974 2569999999999
Q ss_pred HHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 225 L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
|+.|+.++++++ ++.+..+.+|..... +...+..+++|+|+||+++.+++. .....+.++++||+||||++.+
T Consensus 141 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~Ivv~Tp~~l~~~l~--~~~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 141 LAIQIFNEARKFAFESYLKIGIVYGGTSFRH-QNECITRGCHVVIATPGRLLDFVD--RTFITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCCCCEECTTSCHHH-HHHHHTTCCSEEEECHHHHHHHHH--TTSCCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCHHH-HHHHhhcCCCEEEEChHHHHHHHH--hCCcccccCCeEEEccHhhhhc
Confidence 999999999886 356666776665443 444556779999999999998876 4555678899999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEe-cccC--CCCcEEEEEec
Q 005741 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFF--RPNLRFSVKHS 377 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~--r~~~~~~v~~~ 377 (679)
+| |.+.+..+.... ..++..|+++||||++..+......++. +...+. .... ..++...+
T Consensus 218 ~g--f~~~~~~i~~~~---------~~~~~~q~l~~SAT~~~~~~~~~~~~l~---~~~~i~~~~~~~~~~~i~~~~--- 280 (434)
T 2db3_A 218 MG--FSEDMRRIMTHV---------TMRPEHQTLMFSATFPEEIQRMAGEFLK---NYVFVAIGIVGGACSDVKQTI--- 280 (434)
T ss_dssp TT--THHHHHHHHHCT---------TSCSSCEEEEEESCCCHHHHHHHHTTCS---SCEEEEESSTTCCCTTEEEEE---
T ss_pred cC--cHHHHHHHHHhc---------CCCCCceEEEEeccCCHHHHHHHHHhcc---CCEEEEeccccccccccceEE---
Confidence 98 899988884321 1245789999999999887665554442 111111 0000 00000000
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005741 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
T Consensus 281 -------------------------------------------------------------------------------- 280 (434)
T 2db3_A 281 -------------------------------------------------------------------------------- 280 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCC
Q 005741 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537 (679)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~ 537 (679)
.......+...+++.+.+. ..++||||++++.++.+++.|...++
T Consensus 281 ---------------------------------~~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~ 325 (434)
T 2db3_A 281 ---------------------------------YEVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEF 325 (434)
T ss_dssp ---------------------------------EECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------EEeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCC
Confidence 0001122344455555554 33599999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005741 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 538 ~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
.+..+||++++++|+.++++|++|+.+|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|++
T Consensus 326 ~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~ 405 (434)
T 2db3_A 326 PTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 405 (434)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 005741 618 LSSM 621 (679)
Q Consensus 618 ~~~~ 621 (679)
+.+.
T Consensus 406 ~~~~ 409 (434)
T 2db3_A 406 PEKD 409 (434)
T ss_dssp TTTC
T ss_pred cccc
Confidence 6543
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.7e-51 Score=462.06 Aligned_cols=352 Identities=19% Similarity=0.241 Sum_probs=269.3
Q ss_pred ccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEeecCCcchhhhhhhhhcc----------CCeEE
Q 005741 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWL--AHHDCLVLAATGSGKSLCFQIPALLT----------GKVVV 217 (679)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l--~g~d~iv~a~TGsGKTl~~~lp~l~~----------~~~vL 217 (679)
++.....+.+.+...|. .+||.+|+|+|.++++.++ .++|++++||||+|||++|++|++.. ++++|
T Consensus 72 ~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~l 150 (563)
T 3i5x_A 72 SLLEEGVLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAV 150 (563)
T ss_dssp HHHHTTSSCHHHHHHHH-TTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEE
T ss_pred HHhhcCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEE
Confidence 33333457788888887 5699999999999999999 67899999999999999999999741 35899
Q ss_pred EEcCchHHHHHHHHHHHhc--------CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceE
Q 005741 218 VISPLISLMHDQCSKLSKH--------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289 (679)
Q Consensus 218 vl~Pt~~L~~q~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~l 289 (679)
||+||++|+.|+.+.+.++ ...+..+.++..............++|+|+||+++.+++... ....+..+++
T Consensus 151 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~ 229 (563)
T 3i5x_A 151 IVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDY 229 (563)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCE
T ss_pred EEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceE
Confidence 9999999999999999874 244666777766555555554557899999999999887742 2345788999
Q ss_pred EEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc--cCC
Q 005741 290 FAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFR 367 (679)
Q Consensus 290 vViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~r 367 (679)
|||||||++.+|| |++.+..+........ ....+..|+++||||++..+...+...++.. ..+.... ...
T Consensus 230 lViDEah~l~~~~--f~~~~~~i~~~l~~~~----~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 301 (563)
T 3i5x_A 230 KVLDEADRLLEIG--FRDDLETISGILNEKN----SKSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNE 301 (563)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHC----SSCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSS
T ss_pred EEEeCHHHHhccc--hHHHHHHHHHhhhhcc----ccCccCceEEEEEccCCHHHHHHHHHhcCCC--ceEEEeccCCCC
Confidence 9999999999999 9999998877665442 2234478899999999987766554444321 1111111 111
Q ss_pred C----CcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCC
Q 005741 368 P----NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDD 443 (679)
Q Consensus 368 ~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (679)
+ .+.......... ...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~-----~~~~~----------------------------------------------------- 323 (563)
T 3i5x_A 302 PEAHERIDQSVVISEKF-----ANSIF----------------------------------------------------- 323 (563)
T ss_dssp CSSCTTEEEEEEEESST-----THHHH-----------------------------------------------------
T ss_pred ccccccCceEEEECchh-----HhhHH-----------------------------------------------------
Confidence 1 111111100000 00000
Q ss_pred ccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchh
Q 005741 444 EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRK 523 (679)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~ 523 (679)
.....+...+.+.....++||||++++
T Consensus 324 -----------------------------------------------------~~~~~l~~~~~~~~~~~~~iVF~~s~~ 350 (563)
T 3i5x_A 324 -----------------------------------------------------AAVEHIKKQIKERDSNYKAIIFAPTVK 350 (563)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHTTTCCEEEEECSCHH
T ss_pred -----------------------------------------------------HHHHHHHHHHhhcCCCCcEEEEcCcHH
Confidence 011112222333334679999999999
Q ss_pred HHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHh
Q 005741 524 ETLSIAKYLCGF---GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600 (679)
Q Consensus 524 ~~~~l~~~L~~~---~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~ 600 (679)
.++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++.+|+||+
T Consensus 351 ~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 430 (563)
T 3i5x_A 351 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430 (563)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhc
Confidence 999999999986 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCceEEEEecCCCCC
Q 005741 601 GRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 601 GRagR~G~~g~~~~l~~~~~~~ 622 (679)
|||||.|+.|.|++|+.+.+..
T Consensus 431 GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 431 GRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp TTSSCTTCCEEEEEEEEGGGHH
T ss_pred CccccCCCCceEEEEEchhHHH
Confidence 9999999999999999877644
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.2e-51 Score=456.70 Aligned_cols=352 Identities=19% Similarity=0.243 Sum_probs=269.9
Q ss_pred ccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEeecCCcchhhhhhhhhc----------cCCeEE
Q 005741 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWL--AHHDCLVLAATGSGKSLCFQIPALL----------TGKVVV 217 (679)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l--~g~d~iv~a~TGsGKTl~~~lp~l~----------~~~~vL 217 (679)
++.....+.+.+.++|. .+||.+|+|+|.++++.++ .++|++++||||+|||++|++|++. .++++|
T Consensus 21 ~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~l 99 (579)
T 3sqw_A 21 SLLEEGVLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAV 99 (579)
T ss_dssp HHHHTTSSCHHHHHHHH-TTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEE
T ss_pred HHhhcCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEE
Confidence 34334457888888887 6799999999999999999 7889999999999999999999974 145899
Q ss_pred EEcCchHHHHHHHHHHHhc--------CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceE
Q 005741 218 VISPLISLMHDQCSKLSKH--------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289 (679)
Q Consensus 218 vl~Pt~~L~~q~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~l 289 (679)
||+||++|+.|+.+.+.++ .+.+..+.++..............++|+|+||+++.+++... ....+..+++
T Consensus 100 vl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~ 178 (579)
T 3sqw_A 100 IVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDY 178 (579)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCE
T ss_pred EEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCE
Confidence 9999999999999999874 245666676666555455554557899999999999887742 2445788999
Q ss_pred EEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc--cCC
Q 005741 290 FAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFR 367 (679)
Q Consensus 290 vViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~r 367 (679)
|||||||++.+|| |++.+..|........ ...++..|+++||||++..+...+...+..+ ..+.... ...
T Consensus 179 lViDEah~l~~~g--f~~~~~~i~~~l~~~~----~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~--~~~~~~~~~~~~ 250 (579)
T 3sqw_A 179 KVLDEADRLLEIG--FRDDLETISGILNEKN----SKSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNE 250 (579)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHC----SSCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSS
T ss_pred EEEEChHHhhcCC--CHHHHHHHHHHhhhhh----cccccCceEEEEeccCChHHHHHHHHHcCCC--ceEEEeecCccc
Confidence 9999999999999 9999999877765542 2233467999999999987766554444321 1111110 000
Q ss_pred C----CcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCC
Q 005741 368 P----NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDD 443 (679)
Q Consensus 368 ~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (679)
+ .+.......... ...+
T Consensus 251 ~~~~~~i~~~~~~~~~~-----~~~~------------------------------------------------------ 271 (579)
T 3sqw_A 251 PEAHERIDQSVVISEKF-----ANSI------------------------------------------------------ 271 (579)
T ss_dssp CSSCTTEEEEEEEESST-----THHH------------------------------------------------------
T ss_pred cccccccceEEEEecch-----hhhH------------------------------------------------------
Confidence 0 111110000000 0000
Q ss_pred ccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchh
Q 005741 444 EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRK 523 (679)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~ 523 (679)
......+...+.+.....++||||++++
T Consensus 272 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~~iVF~~t~~ 299 (579)
T 3sqw_A 272 ----------------------------------------------------FAAVEHIKKQIKERDSNYKAIIFAPTVK 299 (579)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTTCCEEEEECSSHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHhhcCCCCcEEEECCcHH
Confidence 0011222233333344679999999999
Q ss_pred HHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHh
Q 005741 524 ETLSIAKYLCGF---GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600 (679)
Q Consensus 524 ~~~~l~~~L~~~---~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~ 600 (679)
.++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++..|+||+
T Consensus 300 ~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 379 (579)
T 3sqw_A 300 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379 (579)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhc
Confidence 999999999986 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCceEEEEecCCCCC
Q 005741 601 GRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 601 GRagR~G~~g~~~~l~~~~~~~ 622 (679)
|||||.|+.|.|++|+.+.+..
T Consensus 380 GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 380 GRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp TTSSCTTCCEEEEEEEEGGGHH
T ss_pred cccccCCCCceEEEEEcccHHH
Confidence 9999999999999999987643
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-50 Score=432.22 Aligned_cols=334 Identities=20% Similarity=0.276 Sum_probs=261.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc-----------------------
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT----------------------- 212 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~----------------------- 212 (679)
.+.+.+.+.|. .+||.+|+|+|.++++.++.|+|+++++|||+|||++|++|++..
T Consensus 21 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 21 EMGEIIMGNIE-LTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 46778888887 469999999999999999999999999999999999999998741
Q ss_pred -CCeEEEEcCchHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCc
Q 005741 213 -GKVVVVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287 (679)
Q Consensus 213 -~~~vLvl~Pt~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~ 287 (679)
++++|||+||++|+.|+.+.+.++ ++.+..+.++..... +...+...++|+|+||+++.+++. .+...+.++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~--~~~~~~~~~ 176 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ-QIRDLERGCHLLVATPGRLVDMME--RGKIGLDFC 176 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHH-HHHHHTTCCSEEEECHHHHHHHHH--TTSBCCTTC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHH-HHHHhhCCCCEEEEChHHHHHHHH--cCCcChhhC
Confidence 267999999999999999999875 567777777665544 344455678999999999988776 444557789
Q ss_pred eEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccC--CCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc-
Q 005741 288 ALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK--FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS- 364 (679)
Q Consensus 288 ~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~- 364 (679)
++|||||||++.+++ |.+.+..+.... ..+ ...+++++|||++......+..++.-. ..+....
T Consensus 177 ~~iViDEah~~~~~~--~~~~~~~i~~~~---------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~ 243 (417)
T 2i4i_A 177 KYLVLDEADRMLDMG--FEPQIRRIVEQD---------TMPPKGVRHTMMFSATFPKEIQMLARDFLDEY--IFLAVGRV 243 (417)
T ss_dssp CEEEESSHHHHHHTT--CHHHHHHHHTSS---------SCCCBTTBEEEEEESCCCHHHHHHHHHHCSSC--EEEEEC--
T ss_pred cEEEEEChhHhhccC--cHHHHHHHHHhc---------cCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC--EEEEeCCC
Confidence 999999999999888 888887773210 112 257899999999887766655555311 1111000
Q ss_pred -cCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCC
Q 005741 365 -FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDD 443 (679)
Q Consensus 365 -~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (679)
...+++...+..
T Consensus 244 ~~~~~~i~~~~~~------------------------------------------------------------------- 256 (417)
T 2i4i_A 244 GSTSENITQKVVW------------------------------------------------------------------- 256 (417)
T ss_dssp --CCSSEEEEEEE-------------------------------------------------------------------
T ss_pred CCCccCceEEEEE-------------------------------------------------------------------
Confidence 011111111110
Q ss_pred ccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchh
Q 005741 444 EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRK 523 (679)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~ 523 (679)
.....+...+.+.+......+++||||++++
T Consensus 257 -------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~ 287 (417)
T 2i4i_A 257 -------------------------------------------------VEESDKRSFLLDLLNATGKDSLTLVFVETKK 287 (417)
T ss_dssp -------------------------------------------------CCGGGHHHHHHHHHHTCCTTCEEEEECSSHH
T ss_pred -------------------------------------------------eccHhHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 0011233344445554445679999999999
Q ss_pred HHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhcc
Q 005741 524 ETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603 (679)
Q Consensus 524 ~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 603 (679)
.++.+++.|...++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||+
T Consensus 288 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (417)
T 2i4i_A 288 GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367 (417)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEecCCCCC
Q 005741 604 GRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 604 gR~G~~g~~~~l~~~~~~~ 622 (679)
||.|+.|.|++|+++.+..
T Consensus 368 gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 368 GRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp CC--CCEEEEEEECGGGGG
T ss_pred ccCCCCceEEEEEccccHH
Confidence 9999999999999876643
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.9e-49 Score=425.45 Aligned_cols=329 Identities=16% Similarity=0.250 Sum_probs=256.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+...|. .+||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|+
T Consensus 43 ~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 43 GLREDLLRGIY-AYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 121 (410)
T ss_dssp CCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHH
Confidence 46677888887 56999999999999999999999999999999999999999874 478999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+.++ ++.+..+.++..... +...+...++|+|+||+++.+++. .+...+.++++||+||||++.+++ |
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ivv~Tp~~l~~~l~--~~~~~~~~~~~vViDEah~~~~~~--~ 196 (410)
T 2j0s_A 122 QKGLLALGDYMNVQCHACIGGTNVGE-DIRKLDYGQHVVAGTPGRVFDMIR--RRSLRTRAIKMLVLDEADEMLNKG--F 196 (410)
T ss_dssp HHHHHHHTTTTTCCEEEECTTSCHHH-HHHHHHHCCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEETHHHHTSTT--T
T ss_pred HHHHHHHhccCCeEEEEEECCCCHHH-HHHHhhcCCCEEEcCHHHHHHHHH--hCCccHhheeEEEEccHHHHHhhh--h
Confidence 9999886 356666666655443 333444567999999999988776 445566789999999999999887 7
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEec--ccCCCCcEEEEEecCCccch
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT--SFFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~~r~~~~~~v~~~~~~~~~ 383 (679)
...+..+ +..+++..|++++|||++......+...+.. +..+... ....+++.......
T Consensus 197 ~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------ 257 (410)
T 2j0s_A 197 KEQIYDV-----------YRYLPPATQVVLISATLPHEILEMTNKFMTD--PIRILVKRDELTLEGIKQFFVAV------ 257 (410)
T ss_dssp HHHHHHH-----------HTTSCTTCEEEEEESCCCHHHHTTGGGTCSS--CEEECCCGGGCSCTTEEEEEEEE------
T ss_pred HHHHHHH-----------HHhCccCceEEEEEcCCCHHHHHHHHHHcCC--CEEEEecCccccCCCceEEEEEe------
Confidence 7777666 4445668899999999987655433222221 1111000 00000110000000
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005741 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 258 -------------------------------------------------------------------------------- 257 (410)
T 2j0s_A 258 -------------------------------------------------------------------------------- 257 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccC-chHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005741 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLN-KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
.... +...+.+.+.. ...+++||||++++.++.+++.|...++.+..+
T Consensus 258 ------------------------------~~~~~k~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (410)
T 2j0s_A 258 ------------------------------EREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 306 (410)
T ss_dssp ------------------------------SSTTHHHHHHHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred ------------------------------CcHHhHHHHHHHHHHh-cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEe
Confidence 0001 12222222222 235699999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||++++++|+.+++.|++|+.+|||||+++++|||+|++++||+||+|++...|+||+||+||.|+.|.|++|++..+
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 307 HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998544
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.7e-49 Score=426.20 Aligned_cols=330 Identities=19% Similarity=0.251 Sum_probs=245.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|.+ +|+..|+++|.++++.+++|+++++++|||+|||++|++|++. .++++||++||++|+.|+
T Consensus 46 ~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 46 NLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 124 (414)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHH
Confidence 567778888874 6999999999999999999999999999999999999999874 577999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+.++ +..+....++..............++|+|+||+++.+++. .+...+.++++||+||||++.+++ |
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~~~~vViDEah~~~~~~--~ 200 (414)
T 3eiq_A 125 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN--RRYLSPKYIKMFVLDEADEMLSRG--F 200 (414)
T ss_dssp HHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH--HTSSCSTTCCEEEECSHHHHHHTT--T
T ss_pred HHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH--cCCcccccCcEEEEECHHHhhccC--c
Confidence 9999886 4566666666655544444444778999999999988776 455567789999999999998877 7
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc--cCCCCcEEEEEecCCccch
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~r~~~~~~v~~~~~~~~~ 383 (679)
...+..+ +..++++.|+++||||++......+...+... ..+.... .....+....
T Consensus 201 ~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------- 258 (414)
T 3eiq_A 201 KDQIYDI-----------FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDP--IRILVKKEELTLEGIRQFY--------- 258 (414)
T ss_dssp HHHHHHH-----------HTTSCTTCEEEEECSCCCHHHHHHHTTTCSSC--EEECCCCCCCCTTSCCEEE---------
T ss_pred HHHHHHH-----------HHhCCCCCeEEEEEEecCHHHHHHHHHHcCCC--EEEEecCCccCCCCceEEE---------
Confidence 7766666 44556688999999999887766544433211 0000000 0000000000
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005741 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 259 -------------------------------------------------------------------------------- 258 (414)
T 3eiq_A 259 -------------------------------------------------------------------------------- 258 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhcccc-CchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005741 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL-NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
...... .+...+.+.+ +....+++||||++++.++.+++.|...++.+..+
T Consensus 259 ---------------------------~~~~~~~~~~~~l~~~~-~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 310 (414)
T 3eiq_A 259 ---------------------------INVEREEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM 310 (414)
T ss_dssp ---------------------------EECSSSTTHHHHHHHHH-HSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC
T ss_pred ---------------------------EEeChHHhHHHHHHHHH-HhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEe
Confidence 000001 1223333333 33356799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+|++|++..+|+||+||+||.|+.|.|++|++..+
T Consensus 311 h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 311 HGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp ---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.8e-48 Score=414.93 Aligned_cols=329 Identities=19% Similarity=0.255 Sum_probs=258.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------CCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------~~~vLvl~Pt~~L~~q~ 229 (679)
.+++.+.+.|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 14 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 14 LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp CCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHH
Confidence 466778888874 69999999999999999999999999999999999999998752 56999999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005741 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.+.+.++ ++.+..+.++............+.++|+|+||+++..++. .....+.++++||+||||++.++. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~--~~~~~~~~~~~vViDEaH~~~~~~-~ 169 (391)
T 1xti_A 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR--NKSLNLKHIKHFILDECDKMLEQL-D 169 (391)
T ss_dssp HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHH--TTSSCCTTCSEEEECSHHHHTSSH-H
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHH--cCCccccccCEEEEeCHHHHhhcc-c
Confidence 9999886 6777778777665554444445668999999999988766 444557889999999999997641 1
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCC---CCcEEEEEecCCcc
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR---PNLRFSVKHSKTSS 381 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r---~~~~~~v~~~~~~~ 381 (679)
++..+..+ +...+...|++++|||++......+...+..+ ..+....... .++......
T Consensus 170 ~~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 231 (391)
T 1xti_A 170 MRRDVQEI-----------FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP--MEIFVDDETKLTLHGLQQYYVK----- 231 (391)
T ss_dssp HHHHHHHH-----------HHTSCSSSEEEEEESSCCSTHHHHHHHHCSSC--EEEECCCCCCCCCTTCEEEEEE-----
T ss_pred hHHHHHHH-----------HhhCCCCceEEEEEeeCCHHHHHHHHHHcCCC--eEEEecCccccCcccceEEEEE-----
Confidence 55555554 23344578999999999988777666666421 1111110000 000000000
Q ss_pred chhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhc
Q 005741 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (679)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (679)
T Consensus 232 -------------------------------------------------------------------------------- 231 (391)
T 1xti_A 232 -------------------------------------------------------------------------------- 231 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEE
Q 005741 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541 (679)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~ 541 (679)
.....+...+.+.+.. ...+++||||++++.++.+++.|...++.+..
T Consensus 232 -------------------------------~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~ 279 (391)
T 1xti_A 232 -------------------------------LKDNEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 279 (391)
T ss_dssp -------------------------------CCGGGHHHHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred -------------------------------cCchhHHHHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEE
Confidence 0001122233333333 24679999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecC
Q 005741 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 542 ~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+|++|++...|+||+||+||.|+.|.|++|++.
T Consensus 280 ~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 280 IHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 356 (391)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECS
T ss_pred EeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.4e-48 Score=414.04 Aligned_cols=330 Identities=20% Similarity=0.290 Sum_probs=257.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||.+|+|+|.++++.+++++++++++|||+|||++|++|++. .+.++||++|+++|+.|+
T Consensus 27 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 105 (400)
T 1s2m_A 27 YLKRELLMGIF-EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp CCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHH
Confidence 46677888887 46999999999999999999999999999999999999999974 456999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+.++ ++.+..+.++..... +.......++|+|+||+++.+++. .....+.++++||+||||++.+.+ |
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~T~~~l~~~~~--~~~~~~~~~~~vIiDEaH~~~~~~--~ 180 (400)
T 1s2m_A 106 SQVVRTLGKHCGISCMVTTGGTNLRD-DILRLNETVHILVGTPGRVLDLAS--RKVADLSDCSLFIMDEADKMLSRD--F 180 (400)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCHHH-HHHHTTSCCSEEEECHHHHHHHHH--TTCSCCTTCCEEEEESHHHHSSHH--H
T ss_pred HHHHHHHhcccCceEEEEeCCcchHH-HHHHhcCCCCEEEEchHHHHHHHH--hCCcccccCCEEEEeCchHhhhhc--h
Confidence 9999886 566666666554433 334455678999999999987765 444557789999999999997644 5
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
...+..+ +..+++..++++||||++......+...+..+.... .......+++......
T Consensus 181 ~~~~~~i-----------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 239 (400)
T 1s2m_A 181 KTIIEQI-----------LSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN-LMEELTLKGITQYYAF--------- 239 (400)
T ss_dssp HHHHHHH-----------HTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEES-CCSSCBCTTEEEEEEE---------
T ss_pred HHHHHHH-----------HHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEE-eccccccCCceeEEEE---------
Confidence 5555555 334455789999999999887777766664211000 0000001111100000
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005741 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
T Consensus 240 -------------------------------------------------------------------------------- 239 (400)
T 1s2m_A 240 -------------------------------------------------------------------------------- 239 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005741 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
.....+...+...+. ....+++||||++++.++.+++.|...++.+..+||+
T Consensus 240 ---------------------------~~~~~k~~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 291 (400)
T 1s2m_A 240 ---------------------------VEERQKLHCLNTLFS-KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR 291 (400)
T ss_dssp ---------------------------CCGGGHHHHHHHHHH-HSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ---------------------------echhhHHHHHHHHHh-hcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCC
Confidence 000112222222222 2346799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|++++|..+++.|++|+.+|||||+++++|+|+|++++||+|++|++..+|+||+||+||.|+.|.|++|++..+
T Consensus 292 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2e-47 Score=409.74 Aligned_cols=327 Identities=19% Similarity=0.261 Sum_probs=252.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~ 227 (679)
.+++.+.+.|.+ +|+.+|+|+|.++++.++.+ +++++++|||+|||++|++|++. .++++||++|+++|+.
T Consensus 11 ~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 89 (395)
T 3pey_A 11 GLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELAR 89 (395)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHH
Confidence 567788888874 69999999999999999998 89999999999999999999874 4679999999999999
Q ss_pred HHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CC
Q 005741 228 DQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WG 302 (679)
Q Consensus 228 q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g 302 (679)
|+.+.+.++ ++......++..... ....++|+|+||+++.+++. .....+.++++||+||||++.+ ++
T Consensus 90 q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~~~~~--~~~~~~~~~~~iIiDEah~~~~~~~ 162 (395)
T 3pey_A 90 QTLEVVQEMGKFTKITSQLIVPDSFEKN-----KQINAQVIVGTPGTVLDLMR--RKLMQLQKIKIFVLDEADNMLDQQG 162 (395)
T ss_dssp HHHHHHHHHTTTSCCCEEEESTTSSCTT-----SCBCCSEEEECHHHHHHHHH--TTCBCCTTCCEEEEETHHHHHHSTT
T ss_pred HHHHHHHHHhcccCeeEEEEecCchhhh-----ccCCCCEEEEcHHHHHHHHH--cCCcccccCCEEEEEChhhhcCccc
Confidence 999999885 345555555443321 12357999999999988776 4445577899999999999976 44
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005741 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
+...+..+ ...++.+.|++++|||++..........+...............+.+........
T Consensus 163 --~~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 225 (395)
T 3pey_A 163 --LGDQCIRV-----------KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK---- 225 (395)
T ss_dssp --HHHHHHHH-----------HHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS----
T ss_pred --cHHHHHHH-----------HHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC----
Confidence 66666555 2334457899999999988766655555432111000000111111111110000
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005741 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
T Consensus 226 -------------------------------------------------------------------------------- 225 (395)
T 3pey_A 226 -------------------------------------------------------------------------------- 225 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005741 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
........+..+......+++||||++++.++.+++.|...++.+..+
T Consensus 226 --------------------------------~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 273 (395)
T 3pey_A 226 --------------------------------NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSIL 273 (395)
T ss_dssp --------------------------------SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred --------------------------------chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEe
Confidence 001111222333333456799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC------CHHHHHHHhhccccCCCCceEEEEe
Q 005741 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------SLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~------s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+||+|+ ++.+|+||+||+||.|+.|.+++|+
T Consensus 274 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 274 HGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCC
Q 005741 617 NLS 619 (679)
Q Consensus 617 ~~~ 619 (679)
+..
T Consensus 354 ~~~ 356 (395)
T 3pey_A 354 HDK 356 (395)
T ss_dssp CSH
T ss_pred ech
Confidence 743
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-46 Score=400.12 Aligned_cols=325 Identities=21% Similarity=0.331 Sum_probs=257.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+...|++ +||.+|+|+|.++++.++++ +++++.+|||+|||++|++|++. .+.++||++|+++|+.|+
T Consensus 12 ~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 90 (367)
T 1hv8_A 12 NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 90 (367)
T ss_dssp SCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHH
Confidence 577788888874 69999999999999999988 69999999999999999998874 377999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+.++ ++.+..+.++........ ... .++|+|+||+++.+++. .+...+.++++||+||||++.+++ |
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~-~~~iiv~T~~~l~~~~~--~~~~~~~~~~~iIiDEah~~~~~~--~ 164 (367)
T 1hv8_A 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIK-ALK-NANIVVGTPGRILDHIN--RGTLNLKNVKYFILDEADEMLNMG--F 164 (367)
T ss_dssp HHHHHHHHCSSCCCEEEECTTSCHHHHHH-HHH-TCSEEEECHHHHHHHHH--TTCSCTTSCCEEEEETHHHHHTTT--T
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHh-hcC-CCCEEEecHHHHHHHHH--cCCcccccCCEEEEeCchHhhhhc--h
Confidence 9999885 456666666665443322 222 57999999999987765 444557889999999999998877 6
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
...+..+ +...++..+++++|||++......+..+++. ...... ....++......
T Consensus 165 ~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~--------- 220 (367)
T 1hv8_A 165 IKDVEKI-----------LNACNKDKRILLFSATMPREILNLAKKYMGD---YSFIKA-KINANIEQSYVE--------- 220 (367)
T ss_dssp HHHHHHH-----------HHTSCSSCEEEEECSSCCHHHHHHHHHHCCS---EEEEEC-CSSSSSEEEEEE---------
T ss_pred HHHHHHH-----------HHhCCCCceEEEEeeccCHHHHHHHHHHcCC---CeEEEe-cCCCCceEEEEE---------
Confidence 6666655 2333457899999999998877766666541 111111 111111111100
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005741 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
T Consensus 221 -------------------------------------------------------------------------------- 220 (367)
T 1hv8_A 221 -------------------------------------------------------------------------------- 220 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005741 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
.....+...+.+.+.. ...++||||++++.++.+++.|...++.+..+||+
T Consensus 221 ---------------------------~~~~~~~~~l~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 271 (367)
T 1hv8_A 221 ---------------------------VNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 271 (367)
T ss_dssp ---------------------------CCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred ---------------------------eChHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCC
Confidence 0011223333444432 36799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
+++++|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+.+|+||+||+||.|+.|.+++++++.+
T Consensus 272 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 272 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346 (367)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTS
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997654
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.9e-47 Score=397.65 Aligned_cols=316 Identities=21% Similarity=0.323 Sum_probs=248.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005741 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 158 ~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++.+.+.|+ .+||.+|+|+|+++++++++++++++.+|||+|||++|++|++..++++||++|+++|+.|+.+.+.++
T Consensus 2 ~~~i~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIR-EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 456777887 579999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHH
Q 005741 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLS 313 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~ 313 (679)
+..+..+.++..... +...+. .++|+|+||+++.+++. .....+.++++||+||||++.+++ +...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~v~T~~~l~~~~~--~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~~ 154 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKA-QINRVR-NADIVVATPGRLLDLWS--KGVIDLSSFEIVIIDEADLMFEMG--FIDDIKIIL 154 (337)
T ss_dssp TTSCCCEEEECTTSCHHH-HHHHHT-TCSEEEECHHHHHHHHH--TTSCCGGGCSEEEEESHHHHHHTT--CHHHHHHHH
T ss_pred hhcCCcEEEEECCcchHH-HHhhcC-CCCEEEECHHHHHHHHH--cCCcchhhCcEEEEEChHHhhccc--cHHHHHHHH
Confidence 466667766655443 223333 48999999999987665 444456789999999999998887 666666552
Q ss_pred HHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHH
Q 005741 314 VLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393 (679)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~ 393 (679)
...+...+++++|||++......+..++.. ...+......+++........
T Consensus 155 -----------~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------------- 205 (337)
T 2z0m_A 155 -----------AQTSNRKITGLFSATIPEEIRKVVKDFITN---YEEIEACIGLANVEHKFVHVK--------------- 205 (337)
T ss_dssp -----------HHCTTCSEEEEEESCCCHHHHHHHHHHSCS---CEEEECSGGGGGEEEEEEECS---------------
T ss_pred -----------hhCCcccEEEEEeCcCCHHHHHHHHHhcCC---ceeeecccccCCceEEEEEeC---------------
Confidence 222336778899999998877777666542 111111111111111111000
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005741 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
T Consensus 206 -------------------------------------------------------------------------------- 205 (337)
T 2z0m_A 206 -------------------------------------------------------------------------------- 205 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHH
Q 005741 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~ 553 (679)
......+..+.. ....++||||++++.++.+++.|. .+..+||+++..+|..
T Consensus 206 -----------------------~~~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~ 257 (337)
T 2z0m_A 206 -----------------------DDWRSKVQALRE-NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNR 257 (337)
T ss_dssp -----------------------SSSHHHHHHHHT-CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHH
T ss_pred -----------------------hHHHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHH
Confidence 000111122222 236799999999999999999886 6889999999999999
Q ss_pred HHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005741 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 554 v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
+++.|++|+.+|||||+++++|+|+|++++||+|++|+|+.+|+||+||+||.|+.|.|++|+.
T Consensus 258 ~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 258 NIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred HHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-46 Score=405.22 Aligned_cols=325 Identities=19% Similarity=0.215 Sum_probs=248.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~ 227 (679)
.+++.+.+.|. .+||..|+|+|.++++.++.+ +++++++|||+|||++|++|++. .++++|||+||++|+.
T Consensus 31 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 109 (412)
T 3fht_A 31 RLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 109 (412)
T ss_dssp TCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHH
Confidence 56777888887 469999999999999999987 89999999999999999999873 3458999999999999
Q ss_pred HHHHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-C
Q 005741 228 DQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-W 301 (679)
Q Consensus 228 q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~ 301 (679)
|+.+.+.++ ++.+....++...... ....++|+|+||+++.+++.. .+...+.++++||+||||++.+ +
T Consensus 110 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~~iViDEah~~~~~~ 184 (412)
T 3fht_A 110 QTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIATQ 184 (412)
T ss_dssp HHHHHHHHHTTTSTTCCEEEECTTCCCCTT----CCCCCSEEEECHHHHHHHHTT-SCSSCGGGCCEEEEETHHHHHSTT
T ss_pred HHHHHHHHHHhhcccceEEEeecCcchhhh----hcCCCCEEEECchHHHHHHHh-cCCcChhhCcEEEEeCHHHHhhcC
Confidence 999888875 3455555555443221 234579999999999876642 1344567899999999999976 4
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEec---ccCCCCcEEEEEecC
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT---SFFRPNLRFSVKHSK 378 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~r~~~~~~v~~~~ 378 (679)
+ +...+..+ ...++...|++++|||++..........+... ..+.. ......+........
T Consensus 185 ~--~~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 3fht_A 185 G--HQDQSIRI-----------QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP---NVIKLKREEETLDTIKQYYVLCS 248 (412)
T ss_dssp T--THHHHHHH-----------HHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC---EEECCCGGGSSCTTEEEEEEECS
T ss_pred C--cHHHHHHH-----------HhhCCCCceEEEEEeecCHHHHHHHHHhcCCC---eEEeeccccccccCceEEEEEcC
Confidence 4 66666555 23344578999999999988777666665421 11110 001111111110000
Q ss_pred CccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhh
Q 005741 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (679)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (679)
.
T Consensus 249 ~------------------------------------------------------------------------------- 249 (412)
T 3fht_A 249 S------------------------------------------------------------------------------- 249 (412)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCc
Q 005741 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538 (679)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~ 538 (679)
...+...+.+.+. ....+++||||++++.++.+++.|...++.
T Consensus 250 ------------------------------------~~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 292 (412)
T 3fht_A 250 ------------------------------------RDEKFQALCNLYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQ 292 (412)
T ss_dssp ------------------------------------HHHHHHHHHHHHH-HHSSSEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ------------------------------------hHHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHhCCCe
Confidence 0011111222222 223579999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC------CCHHHHHHHhhccccCCCCceE
Q 005741 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLADC 612 (679)
Q Consensus 539 ~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~G~~g~~ 612 (679)
+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.|
T Consensus 293 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~ 372 (412)
T 3fht_A 293 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 372 (412)
T ss_dssp CEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999 4679999999999999999999
Q ss_pred EEEecC
Q 005741 613 VLYANL 618 (679)
Q Consensus 613 ~~l~~~ 618 (679)
++|++.
T Consensus 373 ~~~~~~ 378 (412)
T 3fht_A 373 VNMVDS 378 (412)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999974
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.6e-48 Score=415.55 Aligned_cols=334 Identities=20% Similarity=0.261 Sum_probs=145.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+++.+.+.|. .+||.+|+|+|+++++.+++++++++++|||+|||++|++|++. .++++||++|+++|+.|+
T Consensus 27 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 105 (394)
T 1fuu_A 27 ELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 105 (394)
T ss_dssp CCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHH
Confidence 57788888887 46999999999999999999999999999999999999999874 467999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+.++ ++.+..+.++........ .+. .++|+|+||+++.+.+. .....+.++++||+||||++.+++ |
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-~~~i~v~T~~~l~~~~~--~~~~~~~~~~~vIiDEah~~~~~~--~ 179 (394)
T 1fuu_A 106 QKVVMALAFHMDIKVHACIGGTSFVEDAE-GLR-DAQIVVGTPGRVFDNIQ--RRRFRTDKIKMFILDEADEMLSSG--F 179 (394)
T ss_dssp HHHHHHHTTTSCCCEEEECSSCCHHHHHH-HHH-HCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEETHHHHHHTT--C
T ss_pred HHHHHHHhccCCeeEEEEeCCCchHHHHh-hcC-CCCEEEECHHHHHHHHH--hCCcchhhCcEEEEEChHHhhCCC--c
Confidence 9999875 566777776665443222 222 47999999999987765 344456789999999999998877 7
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
...+..+. ..+++..+++++|||++......+..++..+ ..+.+......
T Consensus 180 ~~~~~~~~-----------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~----- 229 (394)
T 1fuu_A 180 KEQIYQIF-----------TLLPPTTQVVLLSATMPNDVLEVTTKFMRNP--------------VRILVKKDELT----- 229 (394)
T ss_dssp HHHHHHHH-----------HHSCTTCEEEEECSSCCHHHHHHHHHHCCSC--------------EEEEECC---------
T ss_pred HHHHHHHH-----------HhCCCCceEEEEEEecCHHHHHHHHHhcCCC--------------eEEEecCcccc-----
Confidence 77777663 2234478999999999987766665555321 11111000000
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005741 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
...+......
T Consensus 230 ~~~~~~~~~~---------------------------------------------------------------------- 239 (394)
T 1fuu_A 230 LEGIKQFYVN---------------------------------------------------------------------- 239 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEEEE----------------------------------------------------------------------
Confidence 0000000000
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005741 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
..........+..+.+....+++||||++++.++.+++.|...++.+..+||+
T Consensus 240 ---------------------------~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 292 (394)
T 1fuu_A 240 ---------------------------VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 292 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCC
Confidence 00000000111112222345799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCc
Q 005741 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~ 623 (679)
+++++|..+++.|++|+.+|||||+++++|+|+|++++||+|++|++..+|+||+||+||.|+.|.|++|++..+...
T Consensus 293 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 293 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998776543
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=421.17 Aligned_cols=332 Identities=20% Similarity=0.232 Sum_probs=139.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~ 227 (679)
.+.+.+...|.+ +||..|+|+|.++++.++.+ +++++++|||||||++|++|++. .++++|||+||++|+.
T Consensus 98 ~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 176 (479)
T 3fmp_B 98 RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (479)
T ss_dssp TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHH
Confidence 567778888874 79999999999999999987 89999999999999999999974 2448999999999999
Q ss_pred HHHHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-C
Q 005741 228 DQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-W 301 (679)
Q Consensus 228 q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~ 301 (679)
|+.+.+.++ ++.+....++...... .....+|+|+||+++.+++.. .+.+.+.++++|||||||++.+ +
T Consensus 177 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEah~~~~~~ 251 (479)
T 3fmp_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIATQ 251 (479)
T ss_dssp HHHHHHHHHHTTSTTCCEEEESTTCCCCTT----CCCCCSEEEECHHHHHHHHTT-SCCCCGGGCCEEEECCHHHHHTST
T ss_pred HHHHHHHHHHhhCCCceEEEEeCCcccccc----ccCCCCEEEECchHHHHHHHh-cCCcCcccCCEEEEECHHHHhhcC
Confidence 998887764 3455555554433211 133568999999999877642 2345568899999999999986 4
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCcc
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~ 381 (679)
+ |...+..+ ...++...|++++|||++..........+.. ...+ .+......
T Consensus 252 ~--~~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~---~~~i-----------~~~~~~~~- 303 (479)
T 3fmp_B 252 G--HQDQSIRI-----------QRMLPRNCQMLLFSATFEDSVWKFAQKVVPD---PNVI-----------KLKREEET- 303 (479)
T ss_dssp T--HHHHHHHH-----------HTTSCTTSEEEEEESCCCHHHHHHHHHHSSS---EEEE-----------EEC------
T ss_pred C--cHHHHHHH-----------HhhCCccceEEEEeCCCCHHHHHHHHHHcCC---CeEE-----------eccccccC-
Confidence 4 56665555 3445568899999999998876655554421 1111 11000000
Q ss_pred chhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhc
Q 005741 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (679)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (679)
...+.+......
T Consensus 304 ----~~~~~~~~~~~~---------------------------------------------------------------- 315 (479)
T 3fmp_B 304 ----LDTIKQYYVLCS---------------------------------------------------------------- 315 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cCCceEEEEEeC----------------------------------------------------------------
Confidence 000000000000
Q ss_pred cCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEE
Q 005741 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541 (679)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~ 541 (679)
....+... +..+.......++||||++++.++.+++.|...++.+..
T Consensus 316 --------------------------------~~~~~~~~-l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~ 362 (479)
T 3fmp_B 316 --------------------------------SRDEKFQA-LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVAL 362 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------CHHHHHHH-HHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEE
Confidence 00001111 111222223568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC------CHHHHHHHhhccccCCCCceEEEE
Q 005741 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------SLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 542 ~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~------s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|. +..+|+||+|||||.|+.|.|++|
T Consensus 363 lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~ 442 (479)
T 3fmp_B 363 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999994 678999999999999999999999
Q ss_pred ecCCCCC
Q 005741 616 ANLSSMP 622 (679)
Q Consensus 616 ~~~~~~~ 622 (679)
++..+..
T Consensus 443 ~~~~~~~ 449 (479)
T 3fmp_B 443 VDSKHSM 449 (479)
T ss_dssp -------
T ss_pred EcCcchH
Confidence 9876533
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.8e-46 Score=402.37 Aligned_cols=320 Identities=19% Similarity=0.241 Sum_probs=240.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh
Q 005741 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
+.+.+.+++.+++ +|+|+|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|+.+.+++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4466778888898 799999999999999999999999999999999999875 789999999999999999999999
Q ss_pred c---CCceEEEcCCCCc---HHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC-------
Q 005741 236 H---GVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG------- 302 (679)
Q Consensus 236 ~---~~~~~~~~~~~~~---~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g------- 302 (679)
+ ++.+..+.++... .........+.++|+|+||+++.+++. ...+.++++|||||||++..|+
T Consensus 87 ~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~----~~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 87 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE----KLSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH----HHTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH----HhccccccEEEEeChHhhhhccchhhhHH
Confidence 5 6788888877765 222334444558999999999988766 2567799999999999887654
Q ss_pred --CCchHH-HHHHHHHHHhhccccccccC--CCCCEEEEEccC-ChhhHHHHHH-HcCCCCCceEEecccCCCCcEEEEE
Q 005741 303 --HDFRPD-YRRLSVLRENFGANNLKSLK--FDIPLMALTATA-TIQVREDILK-SLHMSKGTKFVLTSFFRPNLRFSVK 375 (679)
Q Consensus 303 --~~f~~~-~~~l~~~~~~~~~~~~~~~~--~~~~~l~lSAT~-~~~~~~~i~~-~l~~~~~~~~~~~~~~r~~~~~~v~ 375 (679)
..|.+. +..+......- ..+..++ +..|++++|||+ +......+.. .+++... .......++....
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~- 235 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQG--KIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG----RLVSVARNITHVR- 235 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHT--CCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS----CCCCCCCSEEEEE-
T ss_pred hhcCCcHHHHHHHHHhcccc--hhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC----ccccccccchhee-
Confidence 347776 55554332200 0012222 578999999994 4333322222 1211000 0000000000000
Q ss_pred ecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcch
Q 005741 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (679)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (679)
T Consensus 236 -------------------------------------------------------------------------------- 235 (414)
T 3oiy_A 236 -------------------------------------------------------------------------------- 235 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC
Q 005741 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535 (679)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~ 535 (679)
....+...+.+.+.. .+.++||||++++.++.+++.|...
T Consensus 236 --------------------------------------~~~~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~ 275 (414)
T 3oiy_A 236 --------------------------------------ISSRSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRF 275 (414)
T ss_dssp --------------------------------------ESSCCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred --------------------------------------eccCHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHc
Confidence 001233344444444 2579999999999999999999999
Q ss_pred CCcEE-EecCCCCHHHHHHHHHHHhCCCeeEEEE----ecccccCccccc-ccEEEEeCCC--CCHHHHHHHhhccccCC
Q 005741 536 GVKAA-AYNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLN-VRRIIHYGWP--QSLEAYYQEAGRAGRDG 607 (679)
Q Consensus 536 ~~~~~-~~hg~~~~~~R~~v~~~F~~g~~~vLVa----T~~~~~GiDip~-v~~VI~~d~p--~s~~~y~Qr~GRagR~G 607 (679)
|+.+. .+||+ +|+ ++.|++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.|
T Consensus 276 ~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 276 KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 99998 99984 444 99999999999999 999999999999 9999999999 99999999999999988
Q ss_pred ----CCceEEEEe
Q 005741 608 ----HLADCVLYA 616 (679)
Q Consensus 608 ----~~g~~~~l~ 616 (679)
+.|.+++|+
T Consensus 350 ~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 350 NGVLVKGVSVIFE 362 (414)
T ss_dssp TTEECCEEEEEEC
T ss_pred CCCCcceEEEEEE
Confidence 589999998
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.5e-46 Score=427.09 Aligned_cols=455 Identities=16% Similarity=0.165 Sum_probs=252.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----cC----CeEEEEcCchHHHHHH-HHHHHhcC---Cc
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TG----KVVVVISPLISLMHDQ-CSKLSKHG---VT 239 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----~~----~~vLvl~Pt~~L~~q~-~~~l~~~~---~~ 239 (679)
+|+|||.++++++++|+++|+++|||+|||++|++|++. .. +++|||+|+++|+.|| .++++++. +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 799999999999999999999999999999999999974 23 8999999999999999 99999874 77
Q ss_pred eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHH----HHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHH
Q 005741 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVL 315 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~----~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~ 315 (679)
+..+.++....... ..+.+.++|+|+||++|.+.+.. ....+.+.++++|||||||++.. ++.+......+...
T Consensus 87 v~~~~g~~~~~~~~-~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 87 VIGLSGDTQLKISF-PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMRHYLMQ 164 (699)
T ss_dssp EEEEC----CCCCH-HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHHHHHHH
T ss_pred EEEEeCCcchhhHH-HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHHHHHHh
Confidence 88887776543222 22335689999999999876631 13345678899999999999854 22344444433211
Q ss_pred H-Hhhc-cccccccCCCCCEEEEEccCChh-------hHHHH---HHHcCCCCCc------eEEecccCCCCcEEEEEec
Q 005741 316 R-ENFG-ANNLKSLKFDIPLMALTATATIQ-------VREDI---LKSLHMSKGT------KFVLTSFFRPNLRFSVKHS 377 (679)
Q Consensus 316 ~-~~~~-~~~~~~~~~~~~~l~lSAT~~~~-------~~~~i---~~~l~~~~~~------~~~~~~~~r~~~~~~v~~~ 377 (679)
. .... ........+.+++++|||||... ....+ ...+....-. ..+.....+|...+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 0000 00001111367899999999873 23333 3333321000 0011112333333333222
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005741 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
.. ...+...+..+...+........ ..........
T Consensus 245 ~~--~~~~~~~l~~l~~~i~~~~~~~~-------------------------------------------~~~~g~~~~~ 279 (699)
T 4gl2_A 245 TR--EDPFKEKLLEIMTRIQTYCQMSP-------------------------------------------MSDFGTQPYE 279 (699)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCCC-------------------------------------------CSCSSSHHHH
T ss_pred cc--CChHHHHHHHHHHHHHHHhccCc-------------------------------------------chhccchHHH
Confidence 11 12233333333333222100000 0000000000
Q ss_pred hhhcc-----------------CCcccc---ccc------------cccccC--------------CCCCCCCCCccc--
Q 005741 458 EFLEN-----------------DSVDDW---DVA------------CGEFYG--------------HSPHRDRDTDRS-- 489 (679)
Q Consensus 458 ~~l~~-----------------~~~~~~---~~~------------~~~~~~--------------~~~~~~~~~~~~-- 489 (679)
.++.. ..+..+ ... ...++. ..+......+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (699)
T 4gl2_A 280 QWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLM 359 (699)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHH
Confidence 00000 000000 000 000000 000000000000
Q ss_pred -------------h-hhccccCchHHHhhhccCCC---C-CCcEEEEeCchhHHHHHHHHHHhC------CCcEEEecCC
Q 005741 490 -------------F-ERTDLLNKPAERLSMLQEPL---E-DGLTIIYVPTRKETLSIAKYLCGF------GVKAAAYNAS 545 (679)
Q Consensus 490 -------------~-~~~~~~~~~~~ll~~l~~~~---~-~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~~~hg~ 545 (679)
. .......+...+++.|.+.. + ..++||||++++.++.++++|... |+.+..+||+
T Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~ 439 (699)
T 4gl2_A 360 TLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 439 (699)
T ss_dssp HHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCS
T ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECC
Confidence 0 00002234444444444322 2 679999999999999999999987 8999999999
Q ss_pred --------CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005741 546 --------LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 546 --------~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
|++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|+|+..|+||+|||||.| +.+++++.
T Consensus 440 ~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 440 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred CCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999987765 44444444
Q ss_pred CCCCCcc---------------CC--CCCCHHHHHHHHH--HHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCCCCCCC
Q 005741 618 LSSMPTL---------------LP--SRRSEDQTKQAYR--MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYVNF 678 (679)
Q Consensus 618 ~~~~~~~---------------~~--~~~~~~~~~~~~~--~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~~c~~~ 678 (679)
....... ++ .....+....... .+..+..++ ....|++..+..||++.. ...|++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~c~~c~~~ 595 (699)
T 4gl2_A 518 SGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKK-MKTKRNIAKHYKNNPSLI-TFLCKNCSVL 595 (699)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCC-SCCC----------CCSE-EEEESSSCCE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhhhhcCccee-EEECCCCCcE
Confidence 3332110 00 1111222222222 234556665 567899999999999986 3468888753
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.6e-46 Score=427.95 Aligned_cols=399 Identities=17% Similarity=0.218 Sum_probs=216.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---c-----CCeEEEEcCchHHHHHHHHHHHhc---
Q 005741 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T-----GKVVVVISPLISLMHDQCSKLSKH--- 236 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~-----~~~vLvl~Pt~~L~~q~~~~l~~~--- 236 (679)
.+|+.+|++||.+++++++.|+|+|+++|||+|||++|++|++. . ++++|||+||++|+.||.+.+.++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999999999973 1 279999999999999999999986
Q ss_pred -CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHH-hhcCceEEEeecccccccCCCCchHHHHHHHH
Q 005741 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (679)
Q Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~-~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~ 314 (679)
++.+..+.++......... +...++|+|+||++|.+++. .+.+ .+.++++|||||||++.++. .+...+..+
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~-~~~~~~Iiv~Tp~~L~~~l~--~~~~~~l~~~~~vViDEaH~~~~~~-~~~~i~~~~-- 161 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQ-IVENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDECHNTSKQH-PYNMIMFNY-- 161 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHH-HHHTCSEEEECHHHHHHHHH--TTSSCCGGGCSEEEEETGGGCSTTC-HHHHHHHHH--
T ss_pred CCceEEEEeCCccccccHHH-hccCCCEEEECHHHHHHHHh--cCcccccccccEEEEeCCCcccCcc-cHHHHHHHH--
Confidence 6788888777654332222 22358999999999988776 4434 57789999999999998643 122222111
Q ss_pred HHHhhccccccccCCCCCEEEEEccCC-------hhhHHHHHHHcCCCCCceEEec----------ccCCCCcEEEEEec
Q 005741 315 LRENFGANNLKSLKFDIPLMALTATAT-------IQVREDILKSLHMSKGTKFVLT----------SFFRPNLRFSVKHS 377 (679)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~----------~~~r~~~~~~v~~~ 377 (679)
+...+ .....+..++++|||||. ......+...+...... ++.. ....|...+....
T Consensus 162 l~~~~----~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~-~~~~~~~~~~~l~~~~~~p~~~~~~~~- 235 (696)
T 2ykg_A 162 LDQKL----GGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDAS-VIATVKHNLEELEQVVYKPQKFFRKVE- 235 (696)
T ss_dssp HHHHH----TTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCC-EEECCCTTHHHHHHHSCCCEEEEEECC-
T ss_pred HHHhh----cccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCc-eEeecccchHHHHhhcCCCceeEEecC-
Confidence 11111 112234688999999998 44455555444211111 1111 0111211111111
Q ss_pred CCccchhhhHhHH-------HHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCC
Q 005741 378 KTSSRASYKKDFC-------QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSP 450 (679)
Q Consensus 378 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (679)
......+...+. .+...+... ...+ . ......
T Consensus 236 -~~~~~~fs~~~~~l~~~i~~l~~~~~~~------~~~~-----~-----------------------------~~~~~~ 274 (696)
T 2ykg_A 236 -SRISDKFKYIIAQLMRDTESLAKRICKD------LENL-----S-----------------------------QIQNRE 274 (696)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHHHHHHSTT------GGGS-----S-----------------------------SCCSCC
T ss_pred -cccCChHHHHHHHHHHHHHHHHHHHHHH------HHHh-----h-----------------------------cccccc
Confidence 111112222222 221111100 0000 0 000000
Q ss_pred CCcchhhhhhcc----C-------Ccccccc-------------------------------ccccccCCC-CCCCCCCc
Q 005741 451 MGKEMSVEFLEN----D-------SVDDWDV-------------------------------ACGEFYGHS-PHRDRDTD 487 (679)
Q Consensus 451 ~~~~~~~~~l~~----~-------~~~~~~~-------------------------------~~~~~~~~~-~~~~~~~~ 487 (679)
........++.. . ..+.... ....++... ........
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 354 (696)
T 2ykg_A 275 FGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 354 (696)
T ss_dssp SSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred ccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHH
Confidence 001110000000 0 0000000 000000000 00000000
Q ss_pred cchh----------------hccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHHHHhCC----CcEEEe--
Q 005741 488 RSFE----------------RTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGFG----VKAAAY-- 542 (679)
Q Consensus 488 ~~~~----------------~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~~----~~~~~~-- 542 (679)
.... ......+...+.+.+.+. .+.+++||||++++.++.++++|...+ +.+..+
T Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G 434 (696)
T 2ykg_A 355 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 434 (696)
T ss_dssp HHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEc
Confidence 0000 001234555556666544 256799999999999999999999987 888888
Q ss_pred ------cCCCCHHHHHHHHHHHhC-CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005741 543 ------NASLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 543 ------hg~~~~~~R~~v~~~F~~-g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
||+|++++|.+++++|++ |+.+|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||. +.|.++++
T Consensus 435 ~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l 512 (696)
T 2ykg_A 435 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLL 512 (696)
T ss_dssp --------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEE
T ss_pred cCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEE
Confidence 559999999999999998 999999999999999999999999999999999999999999 998 78999999
Q ss_pred ecCCCC
Q 005741 616 ANLSSM 621 (679)
Q Consensus 616 ~~~~~~ 621 (679)
++..+.
T Consensus 513 ~~~~~~ 518 (696)
T 2ykg_A 513 TSNAGV 518 (696)
T ss_dssp ESCHHH
T ss_pred ecCCCH
Confidence 986554
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-45 Score=407.22 Aligned_cols=329 Identities=19% Similarity=0.256 Sum_probs=212.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~ 227 (679)
.+.+.+.+.|.+ .|+..|+++|.+|++.++++ +++++++|||+|||++|+++++. .++++|||+|+++|+.
T Consensus 125 ~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~ 203 (508)
T 3fho_A 125 XXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELAR 203 (508)
T ss_dssp ---------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHH
T ss_pred cccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHH
Confidence 345556666653 48989999999999999998 89999999999999999998874 2569999999999999
Q ss_pred HHHHHHHhcC----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CC
Q 005741 228 DQCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WG 302 (679)
Q Consensus 228 q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g 302 (679)
|+.+.+.+++ +......++... ......++|+|+||+++.+++. .....+.++++|||||||++.+ ++
T Consensus 204 Q~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~l~--~~~~~~~~~~lIIiDEaH~~~~~~~ 276 (508)
T 3fho_A 204 QIMDVVTEMGKYTEVKTAFGIKDSVP-----KGAKIDAQIVIGTPGTVMDLMK--RRQLDARDIKVFVLDEADNMLDQQG 276 (508)
T ss_dssp HHHHHHHHHSTTSSCCEEC---------------CCCCSEEEECHHHHHHHHH--TTCSCCTTCCEEEECCHHHHTTC--
T ss_pred HHHHHHHHhCCccCeeEEEEeCCccc-----ccccCCCCEEEECHHHHHHHHH--cCCccccCCCEEEEechhhhcccCC
Confidence 9999999863 222222222211 1123468999999999988766 4455678899999999999986 44
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005741 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
+...+..+. ..++.+.|+++||||++..........+...............+.+......
T Consensus 277 --~~~~~~~i~-----------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------ 337 (508)
T 3fho_A 277 --LGDQSMRIK-----------HLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMD------ 337 (508)
T ss_dssp --CHHHHHHHH-----------HHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEE------
T ss_pred --cHHHHHHHH-----------HhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEE------
Confidence 666666662 2234478999999999876665444444311000000000000000000000
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005741 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
T Consensus 338 -------------------------------------------------------------------------------- 337 (508)
T 3fho_A 338 -------------------------------------------------------------------------------- 337 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005741 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
..........+..+......+++||||++++.++.+++.|.+.++.+..+
T Consensus 338 ------------------------------~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~ 387 (508)
T 3fho_A 338 ------------------------------CQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACL 387 (508)
T ss_dssp ------------------------------C--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEE
T ss_pred ------------------------------CCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 00001111122222333356799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC------CCHHHHHHHhhccccCCCCceEEEEe
Q 005741 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
||++++.+|+.+++.|++|+.+|||||+++++|||+|++++||+||+| .++.+|+||+||+||.|+.|.|++|+
T Consensus 388 hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 388 TGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp C-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred cCCCC
Q 005741 617 NLSSM 621 (679)
Q Consensus 617 ~~~~~ 621 (679)
+..+.
T Consensus 468 ~~~~~ 472 (508)
T 3fho_A 468 HDKKS 472 (508)
T ss_dssp CTTTS
T ss_pred eChHH
Confidence 86543
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.9e-44 Score=399.17 Aligned_cols=401 Identities=15% Similarity=0.182 Sum_probs=200.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc--------CCeEEEEcCchHHHHHHHHHHHhc----CCc
Q 005741 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH----GVT 239 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~--------~~~vLvl~Pt~~L~~q~~~~l~~~----~~~ 239 (679)
-+|+|||.+++++++.|+|+++++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++ ++.
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 37999999999999999999999999999999999999752 889999999999999999999886 788
Q ss_pred eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHH-hhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005741 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~-~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
+..+.++....... ..+...++|+|+||+++.+++. .+.. .+.++++|||||||++.+++. +...+..+ +...
T Consensus 86 ~~~~~g~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~--~~~~ 159 (556)
T 4a2p_A 86 VQGISGENFSNVSV-EKVIEDSDIIVVTPQILVNSFE--DGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY--LEQK 159 (556)
T ss_dssp EEECCCC-----CH-HHHHHHCSEEEECHHHHHHHHH--SSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHH--HHHH
T ss_pred EEEEeCCCCcchhH-HHhhCCCCEEEECHHHHHHHHH--hCcccccccCCEEEEECCcccCCcch-HHHHHHHH--HHhh
Confidence 88877766443322 2233347999999999988775 4444 577899999999999987662 22222111 1111
Q ss_pred hccccccccCCCCCEEEEEccCChhh----------HHHHHHHcCCCC------CceEEecccCCCCcEEEEEecCCccc
Q 005741 319 FGANNLKSLKFDIPLMALTATATIQV----------REDILKSLHMSK------GTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~----------~~~i~~~l~~~~------~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
+....+..++++|||||.... ...+...++... ....+.....++...+..... ...
T Consensus 160 -----~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 232 (556)
T 4a2p_A 160 -----FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR--RIH 232 (556)
T ss_dssp -----HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC--CSC
T ss_pred -----hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC--CcC
Confidence 111234688999999996532 223334443210 000001112233333222221 111
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005741 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
..+...+..+................+ .. ......+......++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------------------------~~~~~~g~~~~~~~~~~ 278 (556)
T 4a2p_A 233 NPFAAIISNLMSETEALMRTIYSVDTL-----SQ-----------------------------NSKKDFGTQNYEHWIVV 278 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-------------------------------------------CCCSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhh-----hc-----------------------------ccccccchhhHHHHHHH
Confidence 122222222222211110000000000 00 00000000000000000
Q ss_pred C------------------------------------------Ccccccccccccc----CCCCCCC---------CCCc
Q 005741 463 D------------------------------------------SVDDWDVACGEFY----GHSPHRD---------RDTD 487 (679)
Q Consensus 463 ~------------------------------------------~~~~~~~~~~~~~----~~~~~~~---------~~~~ 487 (679)
. ...........++ ....... ....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (556)
T 4a2p_A 279 TQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 358 (556)
T ss_dssp HHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHH
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHH
Confidence 0 0000000000000 0000000 0000
Q ss_pred ----cchhhccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHHHHhC------------CCcEEEecCCCCH
Q 005741 488 ----RSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGF------------GVKAAAYNASLPK 548 (679)
Q Consensus 488 ----~~~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~------------~~~~~~~hg~~~~ 548 (679)
..........|...+.+.|.+. ....++||||++++.++.+++.|... |.....+||+|++
T Consensus 359 ~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 438 (556)
T 4a2p_A 359 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 438 (556)
T ss_dssp HHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------
T ss_pred HhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCH
Confidence 0000001244666666666544 34679999999999999999999875 5666777889999
Q ss_pred HHHHHHHHHHhC-CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 549 SQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 549 ~~R~~v~~~F~~-g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
++|..++++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 439 ~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 439 PSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp ---------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred HHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999 999999999999999999999999999999999999999999 999 88999999976543
No 22
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.8e-43 Score=414.01 Aligned_cols=435 Identities=16% Similarity=0.189 Sum_probs=266.8
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc--CCceE
Q 005741 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH--GVTAC 241 (679)
Q Consensus 167 ~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~ 241 (679)
..++| +|+++|.++++.+++|+++++++|||+|||++|++++. ..++++||++|+++|+.|+++.+.++ ++.+.
T Consensus 34 ~~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 34 RSWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CCCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 35677 59999999999999999999999999999999888776 36789999999999999999999996 56777
Q ss_pred EEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcc
Q 005741 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321 (679)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~ 321 (679)
.++++... ...++|+|+||++|.+++. .....+.++++|||||||++.+++ +...+..+
T Consensus 113 ~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~--~~~~~l~~l~lvViDEaH~l~d~~--~g~~~e~i--------- 171 (997)
T 4a4z_A 113 LITGDVQI--------NPDANCLIMTTEILRSMLY--RGADLIRDVEFVIFDEVHYVNDQD--RGVVWEEV--------- 171 (997)
T ss_dssp EECSSCEE--------CTTSSEEEEEHHHHHHHHH--HTCSGGGGEEEEEECCTTCCCTTC--TTCCHHHH---------
T ss_pred EEeCCCcc--------CCCCCEEEECHHHHHHHHH--hCchhhcCCCEEEEECcccccccc--hHHHHHHH---------
Confidence 77776542 2457999999999988766 444457889999999999999887 55566655
Q ss_pred ccccccCCCCCEEEEEccCChhhHHHHHHHcCCC--CCceEEecccCCCCcEEEEEecCCcc-----chhh-hHhHHHHH
Q 005741 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMS--KGTKFVLTSFFRPNLRFSVKHSKTSS-----RASY-KKDFCQLI 393 (679)
Q Consensus 322 ~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~~r~~~~~~v~~~~~~~-----~~~~-~~~~~~~~ 393 (679)
+..++++.++++||||++.. .++..|++.. .+..++.......++...+....... ...+ ...+....
T Consensus 172 --i~~l~~~v~iIlLSAT~~n~--~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 172 --IIMLPQHVKFILLSATVPNT--YEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp --HHHSCTTCEEEEEECCCTTH--HHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred --HHhcccCCCEEEEcCCCCCh--HHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 22345589999999998643 3677777532 23444555555556654443211100 0011 11111111
Q ss_pred HHHhhhcccccccc----------ccc-----cccC-----CCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCc
Q 005741 394 DIYTKKKKTGEKEK----------SAI-----PQDL-----DDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK 453 (679)
Q Consensus 394 ~~~~~~~~~~~~~~----------~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (679)
.............. ... .... ........................ ++
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------------ 314 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRK-FF------------ 314 (997)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc------------
Confidence 11110000000000 000 0000 000000000000000000000000 00
Q ss_pred chhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHH
Q 005741 454 EMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533 (679)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~ 533 (679)
............++..+... ...++||||++++.|+.++..|.
T Consensus 315 ------------------------------------~~~~~~~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~ 357 (997)
T 4a4z_A 315 ------------------------------------TQDGPSKKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLE 357 (997)
T ss_dssp --------------------------------------CCCCTTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTT
T ss_pred ------------------------------------cccccchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHh
Confidence 00000112334455555443 35799999999999999999997
Q ss_pred hCCC---------------------------------------cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEeccccc
Q 005741 534 GFGV---------------------------------------KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574 (679)
Q Consensus 534 ~~~~---------------------------------------~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~ 574 (679)
..++ ++..+||+|++.+|+.+++.|++|.++|||||+++++
T Consensus 358 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~ 437 (997)
T 4a4z_A 358 GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAM 437 (997)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhC
Confidence 7655 5799999999999999999999999999999999999
Q ss_pred CcccccccEEEEeCCCC---------CHHHHHHHhhccccCC--CCceEEEEecCCCCC------------ccCCCC--C
Q 005741 575 GIDKLNVRRIIHYGWPQ---------SLEAYYQEAGRAGRDG--HLADCVLYANLSSMP------------TLLPSR--R 629 (679)
Q Consensus 575 GiDip~v~~VI~~d~p~---------s~~~y~Qr~GRagR~G--~~g~~~~l~~~~~~~------------~~~~~~--~ 629 (679)
|||+|+ ..||+++.|. |+.+|+||+|||||.| ..|.|++++...... ..+.+. .
T Consensus 438 GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 438 GLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp SCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCccccccccc
Confidence 999999 5566555554 9999999999999998 568888887322111 111110 0
Q ss_pred CHHHHHHHH----HHHHHHHH-----hcCCCCcchHHHHHhhhCCCCCCCCCCCCCCC
Q 005741 630 SEDQTKQAY----RMLSDCFR-----YGMNTSCCRAKILVEYFGEDFSHEKCQLYVNF 678 (679)
Q Consensus 630 ~~~~~~~~~----~~l~~~~~-----~~~~~~~cr~~~l~~~f~~~~~~~~c~~c~~~ 678 (679)
........+ ..+..+++ |......|++....++|++......|..|++|
T Consensus 517 ~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c 574 (997)
T 4a4z_A 517 TYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEIC 574 (997)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccccc
Confidence 011111111 01112222 22356779999999999988655457777766
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=408.38 Aligned_cols=357 Identities=16% Similarity=0.169 Sum_probs=241.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005741 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
.+.| +|+++|.+|++.++.|+++|+++|||||||++|++|++. .++++||++||++|+.|+++.+.++...+..+.
T Consensus 180 ~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgllt 258 (1108)
T 3l9o_A 180 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 258 (1108)
T ss_dssp CCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEEC
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEe
Confidence 4445 799999999999999999999999999999999999875 589999999999999999999999766777777
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005741 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
++.. ....++|+|+||++|.+++. .+...+.++++|||||||++.+++ +...+..+.
T Consensus 259 Gd~~--------~~~~~~IlV~Tpe~L~~~L~--~~~~~l~~l~lVVIDEaH~l~d~~--rg~~~e~ii----------- 315 (1108)
T 3l9o_A 259 GDIT--------INPDAGCLVMTTEILRSMLY--RGSEVMREVAWVIFDEVHYMRDKE--RGVVWEETI----------- 315 (1108)
T ss_dssp SSCB--------CCCSCSEEEEEHHHHHHHHH--HCSSHHHHEEEEEEETGGGTTSHH--HHHHHHHHH-----------
T ss_pred Cccc--------cCCCCCEEEeChHHHHHHHH--cCccccccCCEEEEhhhhhccccc--hHHHHHHHH-----------
Confidence 6654 23568999999999998776 444457789999999999998876 666666662
Q ss_pred cccCCCCCEEEEEccCChhhHHHHHHHcC--CCCCceEEecccCCCCcEEEEEecCCccc-------hh-hhHhHHHHHH
Q 005741 325 KSLKFDIPLMALTATATIQVREDILKSLH--MSKGTKFVLTSFFRPNLRFSVKHSKTSSR-------AS-YKKDFCQLID 394 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~--~~~~~~~~~~~~~r~~~~~~v~~~~~~~~-------~~-~~~~~~~~~~ 394 (679)
..+++..|+++||||++.. .++..|++ ...+..++.......++...+........ .. ....+.....
T Consensus 316 ~~l~~~~qvl~lSATipn~--~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~ 393 (1108)
T 3l9o_A 316 ILLPDKVRYVFLSATIPNA--MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 393 (1108)
T ss_dssp HHSCTTSEEEEEECSCSSC--HHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHT
T ss_pred HhcCCCceEEEEcCCCCCH--HHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHH
Confidence 3345588999999998654 23334432 12233444444433344433322111100 00 0111111111
Q ss_pred HHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccccc
Q 005741 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGE 474 (679)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (679)
.+......... ........ .. .+..
T Consensus 394 ~l~~~~~~~~~-------------------------~~~~~~~~-------------~~----~~~~------------- 418 (1108)
T 3l9o_A 394 SISNQIGDDPN-------------------------STDSRGKK-------------GQ----TYKG------------- 418 (1108)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred HHHhhhccccc-------------------------cccccccc-------------cc----cccc-------------
Confidence 00000000000 00000000 00 0000
Q ss_pred ccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCc----------------
Q 005741 475 FYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK---------------- 538 (679)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~---------------- 538 (679)
.............++..+... ...++||||++++.|+.++..|...++.
T Consensus 419 --------------~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 483 (1108)
T 3l9o_A 419 --------------GSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI 483 (1108)
T ss_dssp --------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSC
T ss_pred --------------ccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 000000011223334444332 3569999999999999999998653332
Q ss_pred -----------------------EEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC-----
Q 005741 539 -----------------------AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP----- 590 (679)
Q Consensus 539 -----------------------~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p----- 590 (679)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+++.|
T Consensus 484 ~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~ 563 (1108)
T 3l9o_A 484 ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 563 (1108)
T ss_dssp THHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSC
T ss_pred hhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccc
Confidence 7999999999999999999999999999999999999999999999977763
Q ss_pred ---CCHHHHHHHhhccccCC--CCceEEEEecCCC
Q 005741 591 ---QSLEAYYQEAGRAGRDG--HLADCVLYANLSS 620 (679)
Q Consensus 591 ---~s~~~y~Qr~GRagR~G--~~g~~~~l~~~~~ 620 (679)
.|+.+|+||+|||||.| ..|.|+++++...
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 47788999999999999 6899999997664
No 24
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-42 Score=405.35 Aligned_cols=404 Identities=15% Similarity=0.191 Sum_probs=210.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc--------CCeEEEEcCchHHHHHHHHHHHhc----
Q 005741 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH---- 236 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~--------~~~vLvl~Pt~~L~~q~~~~l~~~---- 236 (679)
.|+.+|++||.+++++++.|+++++++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 36779999999999999999999999999999999999999753 789999999999999999999886
Q ss_pred CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHH-hhcCceEEEeecccccccCCCCchHHHHHHHHH
Q 005741 237 GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVL 315 (679)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~-~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~ 315 (679)
++.+..++++....... ..+...++|+|+||+++.+++. .+.. .+.++++|||||||++...+. +...+..+
T Consensus 324 ~~~v~~~~G~~~~~~~~-~~~~~~~~IvI~Tp~~L~~~l~--~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~--- 396 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSV-EKVIEDSDIIVVTPQILVNSFE--DGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY--- 396 (936)
T ss_dssp TCCEEEECCC-----CC-HHHHHHCSEEEECHHHHHHHHH--SSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHH---
T ss_pred CceEEEEECCcchhhHH-HHhccCCCEEEecHHHHHHHHH--cCccccccCCCEEEEECccccCCCcc-HHHHHHHH---
Confidence 78888888776443221 2222347999999999988766 3333 567799999999999986441 22222222
Q ss_pred HHhhccccccccCCCCCEEEEEccCChh----------hHHHHHHHcCCCCCc------eEEecccCCCCcEEEEEecCC
Q 005741 316 RENFGANNLKSLKFDIPLMALTATATIQ----------VREDILKSLHMSKGT------KFVLTSFFRPNLRFSVKHSKT 379 (679)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~----------~~~~i~~~l~~~~~~------~~~~~~~~r~~~~~~v~~~~~ 379 (679)
.... +....+..++++|||||... ....+...++...-. ..+.....++...+......
T Consensus 397 ~~~~----~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~- 471 (936)
T 4a2w_A 397 LEQK----FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR- 471 (936)
T ss_dssp HHHH----HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC-
T ss_pred HHHh----hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc-
Confidence 1110 11223467899999999642 233344444321000 00011123333333322211
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005741 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
....+...+..+................+ . .......+......+
T Consensus 472 -~~~~~~~~l~~l~~~i~~~~~~~l~~~~l-----~-----------------------------~~~~~~~g~~~y~~~ 516 (936)
T 4a2w_A 472 -IHNPFAAIISNLMSETEALMRTIAYVDTL-----S-----------------------------QNSKKDFGTQNYEHW 516 (936)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHHHC----------------------------------------------CCSSHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHhhhhh-----h-----------------------------hccccccchHHHHHH
Confidence 11222222222222211110000000000 0 000000000000000
Q ss_pred hcc----------CCc-----------------c---------------ccccccccccCCCCCCC-CCCcc--------
Q 005741 460 LEN----------DSV-----------------D---------------DWDVACGEFYGHSPHRD-RDTDR-------- 488 (679)
Q Consensus 460 l~~----------~~~-----------------~---------------~~~~~~~~~~~~~~~~~-~~~~~-------- 488 (679)
+.. ... . ........++....... ...+.
T Consensus 517 l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~ 596 (936)
T 4a2w_A 517 IVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQE 596 (936)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 000 000 0 00000000000000000 00000
Q ss_pred --------chhhccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHHHHhC------------CCcEEEecCC
Q 005741 489 --------SFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGF------------GVKAAAYNAS 545 (679)
Q Consensus 489 --------~~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~------------~~~~~~~hg~ 545 (679)
.........|...+.+.|.+. ....++||||++++.++.|+++|... |..+..+||+
T Consensus 597 ~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~ 676 (936)
T 4a2w_A 597 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676 (936)
T ss_dssp HHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------
T ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCC
Confidence 000001244666666677654 34679999999999999999999986 6667777999
Q ss_pred CCHHHHHHHHHHHhC-CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 546 LPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~-g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 677 m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 677 MTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp -----------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999 999999999999999999999999999999999999999999 999 78999999876543
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1e-42 Score=390.49 Aligned_cols=402 Identities=18% Similarity=0.188 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc--------CCeEEEEcCchHHHHHHHHHHHhc----CCce
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH----GVTA 240 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~--------~~~vLvl~Pt~~L~~q~~~~l~~~----~~~~ 240 (679)
+|+|||.+++++++.|+++++++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999999742 889999999999999999999886 7888
Q ss_pred EEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHH-hhcCceEEEeecccccccCCCCchHHHHHHHHHHHhh
Q 005741 241 CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319 (679)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~-~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~ 319 (679)
..+.++....... ..+...++|+|+||+++.+++. .+.. .+.++++|||||||++.+.+. +...+... ....
T Consensus 84 ~~~~g~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~---~~~~ 156 (555)
T 3tbk_A 84 ASISGATSDSVSV-QHIIEDNDIIILTPQILVNNLN--NGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRY---LDHK 156 (555)
T ss_dssp EEECTTTGGGSCH-HHHHHHCSEEEECHHHHHHHHH--TSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHH---HHHH
T ss_pred EEEcCCCcchhhH-HHHhcCCCEEEECHHHHHHHHh--cCcccccccCCEEEEECccccCCcch-HHHHHHHH---HHhh
Confidence 8888776443322 2223357999999999988766 3334 577899999999999987541 23322222 1111
Q ss_pred ccccccccCCCCCEEEEEccCChhh----------HHHHHHHcCCCC------CceEEecccCCCCcEEEEEecCCccch
Q 005741 320 GANNLKSLKFDIPLMALTATATIQV----------REDILKSLHMSK------GTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 320 ~~~~~~~~~~~~~~l~lSAT~~~~~----------~~~i~~~l~~~~------~~~~~~~~~~r~~~~~~v~~~~~~~~~ 383 (679)
. -....+..++++|||||.... ...+...++... ....+.....++...+...... ...
T Consensus 157 ~---~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 231 (555)
T 3tbk_A 157 L---GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR--TSN 231 (555)
T ss_dssp T---SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC--SCC
T ss_pred h---ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc--ccC
Confidence 0 111224678999999997632 223344443210 0000111122333333322211 112
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005741 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
.+...+..+.................+ .. ......+......++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~-----------------------------~~~~~~g~~~~~~~~~~~ 278 (555)
T 3tbk_A 232 TFKCIISQLMKETEKLAKDVSEELGKL----FQ-----------------------------IQNREFGTQKYEQWIVGV 278 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHGG----GG-----------------------------CCSCCSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh----hh-----------------------------cccccccchhhhHHHHHH
Confidence 222333322222111100000000000 00 000000000000000000
Q ss_pred C--------ccc--------------------------------ccc--ccccccCCCCCCC-CCC--------------
Q 005741 464 S--------VDD--------------------------------WDV--ACGEFYGHSPHRD-RDT-------------- 486 (679)
Q Consensus 464 ~--------~~~--------------------------------~~~--~~~~~~~~~~~~~-~~~-------------- 486 (679)
. ... ++. ....++....... ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (555)
T 3tbk_A 279 HKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEE 358 (555)
T ss_dssp HHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHH
T ss_pred HHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhh
Confidence 0 000 000 0000000000000 000
Q ss_pred --ccchhhccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHHHHhCC------------CcEEEecCCCCHH
Q 005741 487 --DRSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGFG------------VKAAAYNASLPKS 549 (679)
Q Consensus 487 --~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~~------------~~~~~~hg~~~~~ 549 (679)
...........+...+.+.|.+. .+..++||||+++..++.+++.|...+ .....+||+|+++
T Consensus 359 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 438 (555)
T 3tbk_A 359 LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLP 438 (555)
T ss_dssp HHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------
T ss_pred hhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHH
Confidence 00000001234555566665543 346799999999999999999999863 4555667799999
Q ss_pred HHHHHHHHHhC-CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 550 QLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 550 ~R~~v~~~F~~-g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
+|..++++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 439 ~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 439 AQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp -------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 99999999999 999999999999999999999999999999999999999999 998 89999999976544
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.9e-42 Score=398.72 Aligned_cols=405 Identities=15% Similarity=0.189 Sum_probs=209.4
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc--------CCeEEEEcCchHHHHHHHHHHHhc---
Q 005741 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH--- 236 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~--------~~~vLvl~Pt~~L~~q~~~~l~~~--- 236 (679)
.+|+..|+|||.++++.++.|+|+|+++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999999999999999999999753 889999999999999999999886
Q ss_pred -CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHH-hhcCceEEEeecccccccCCCCchHHHHHHHH
Q 005741 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (679)
Q Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~-~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~ 314 (679)
++.+..++++....... ..+...++|+|+||+++.+++. .+.. .+.++++|||||||++...+. +...+..+
T Consensus 323 ~~~~v~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~--~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~-- 396 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSV-EKVIEDSDIIVVTPQILVNSFE--DGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY-- 396 (797)
T ss_dssp GTCCEEEECCC-----CH-HHHHHTCSEEEECHHHHHHHHH--SSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHH--
T ss_pred CCceEEEEeCCcchhhhH-HHhhCCCCEEEEchHHHHHHHH--hccccccccCCEEEEECccccCCCcc-HHHHHHHH--
Confidence 78888888776544322 2333468999999999988766 3434 577899999999999986431 22222222
Q ss_pred HHHhhccccccccCCCCCEEEEEccCCh----------hhHHHHHHHcCCCCCc------eEEecccCCCCcEEEEEecC
Q 005741 315 LRENFGANNLKSLKFDIPLMALTATATI----------QVREDILKSLHMSKGT------KFVLTSFFRPNLRFSVKHSK 378 (679)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~----------~~~~~i~~~l~~~~~~------~~~~~~~~r~~~~~~v~~~~ 378 (679)
.... +....+..++++|||||.. +....+...++..... ..+.....++...+......
T Consensus 397 -~~~~----~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 397 -LEQK----FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp -HHHH----HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred -HHHh----hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 1110 1122346789999999964 2333444444321000 00111123333333322211
Q ss_pred CccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhh
Q 005741 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (679)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (679)
....+...+..+............... .+.. ......+......
T Consensus 472 --~~~~~~~~~~~l~~~i~~~~~~~~~l~-----~l~~-----------------------------~~~~~~g~~~~~~ 515 (797)
T 4a2q_A 472 --IHNPFAAIISNLMSETEALMRTIYSVD-----TLSQ-----------------------------NSKKDFGTQNYEH 515 (797)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHHHC----------------------------------------------CCSSHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHhhH-----Hhhh-----------------------------hccccccchhHHH
Confidence 111222222222221111100000000 0000 0000000000000
Q ss_pred hhccC---------C-c-----------------ccc---------------ccccccccCCCCCCC-CC----------
Q 005741 459 FLEND---------S-V-----------------DDW---------------DVACGEFYGHSPHRD-RD---------- 485 (679)
Q Consensus 459 ~l~~~---------~-~-----------------~~~---------------~~~~~~~~~~~~~~~-~~---------- 485 (679)
++... . . ..+ ......++....... ..
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 595 (797)
T 4a2q_A 516 WIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ 595 (797)
T ss_dssp HHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 00000 0 0 000 000000000000000 00
Q ss_pred --C----ccchhhccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHHHHhC------------CCcEEEecC
Q 005741 486 --T----DRSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGF------------GVKAAAYNA 544 (679)
Q Consensus 486 --~----~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~------------~~~~~~~hg 544 (679)
. ...........|...+.+.|.+. ....++||||++++.++.++++|... |..+..+||
T Consensus 596 ~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg 675 (797)
T 4a2q_A 596 EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTT 675 (797)
T ss_dssp TTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------
T ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCC
Confidence 0 00000001244666666666542 34679999999999999999999873 667778899
Q ss_pred CCCHHHHHHHHHHHhC-CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 545 SLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~-g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
+|++++|..++++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.|++|++..+.
T Consensus 676 ~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 676 GMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 9999999999999999 999999999999999999999999999999999999999999 999 89999999976543
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.6e-42 Score=394.10 Aligned_cols=336 Identities=21% Similarity=0.248 Sum_probs=247.4
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHH
Q 005741 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 157 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l 233 (679)
+++.+.+.++ .+||.+|+|+|.++++.++.++++++++|||+|||++|.++++ ..++++||++|+++|+.|+++.+
T Consensus 10 l~~~~~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 10 ISSYAVGILK-EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHHHHHH-CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred cCHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHH
Confidence 6677788887 4799999999999999999999999999999999999999987 36899999999999999999999
Q ss_pred Hhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHH
Q 005741 234 SKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310 (679)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~ 310 (679)
+++ ++.+..+.|+...... ..+.++|+|+||+++..++. .....+.++++|||||||++.+++ +...+.
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~l~--~~~~~l~~~~~vIiDE~H~l~~~~--r~~~~~ 160 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDE----HLGDCDIIVTTSEKADSLIR--NRASWIKAVSCLVVDEIHLLDSEK--RGATLE 160 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSS----CSTTCSEEEEEHHHHHHHHH--TTCSGGGGCCEEEETTGGGGGCTT--THHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcchh----hccCCCEEEECHHHHHHHHH--cChhHHhhcCEEEEeeeeecCCCC--cccHHH
Confidence 653 6777777765543221 12368999999999988776 333346789999999999998765 555555
Q ss_pred HHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHH
Q 005741 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390 (679)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~ 390 (679)
.+...... ..++.++++||||++. ..++..+++. ..+.......++...+.... .. .+..
T Consensus 161 ~ll~~l~~--------~~~~~~ii~lSATl~n--~~~~~~~l~~----~~~~~~~r~~~l~~~~~~~~-~~--~~~~--- 220 (702)
T 2p6r_A 161 ILVTKMRR--------MNKALRVIGLSATAPN--VTEIAEWLDA----DYYVSDWRPVPLVEGVLCEG-TL--ELFD--- 220 (702)
T ss_dssp HHHHHHHH--------HCTTCEEEEEECCCTT--HHHHHHHTTC----EEEECCCCSSCEEEEEECSS-EE--EEEE---
T ss_pred HHHHHHHh--------cCcCceEEEECCCcCC--HHHHHHHhCC----CcccCCCCCccceEEEeeCC-ee--eccC---
Confidence 55433322 2347899999999963 6788888862 22322222223322221100 00 0000
Q ss_pred HHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccc
Q 005741 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (679)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (679)
.
T Consensus 221 -----------------------------------------------------------------------~-------- 221 (702)
T 2p6r_A 221 -----------------------------------------------------------------------G-------- 221 (702)
T ss_dssp -----------------------------------------------------------------------T--------
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC---------------
Q 005741 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--------------- 535 (679)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--------------- 535 (679)
.............+.+.+. +.+++||||++++.++.++..|.+.
T Consensus 222 ------------------~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~ 280 (702)
T 2p6r_A 222 ------------------AFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAIL 280 (702)
T ss_dssp ------------------TEEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHH
T ss_pred ------------------chhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 0000000001111222222 3679999999999999999998753
Q ss_pred ---------------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----eC---CCCCH
Q 005741 536 ---------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----YG---WPQSL 593 (679)
Q Consensus 536 ---------------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~d---~p~s~ 593 (679)
+.++..+||+|++++|+.+++.|++|+.+|||||+++++|||+|++++||+ || .|.|.
T Consensus 281 ~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~ 360 (702)
T 2p6r_A 281 EENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKV 360 (702)
T ss_dssp TTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCH
T ss_pred hhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCH
Confidence 246888999999999999999999999999999999999999999999999 76 78999
Q ss_pred HHHHHHhhccccCC--CCceEEEEecCCCC
Q 005741 594 EAYYQEAGRAGRDG--HLADCVLYANLSSM 621 (679)
Q Consensus 594 ~~y~Qr~GRagR~G--~~g~~~~l~~~~~~ 621 (679)
.+|+||+|||||.| ..|.|+++++..+.
T Consensus 361 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 361 SEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999998 47999999987663
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.4e-41 Score=401.29 Aligned_cols=292 Identities=19% Similarity=0.241 Sum_probs=215.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhc
Q 005741 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 160 ~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
.+.+.+++.+|| +|+|+|.++++.+++|+|++++||||||||++|+++++. .++++|||+||++|+.|+.+.+.++
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 355566677899 699999999999999999999999999999988888765 7899999999999999999999994
Q ss_pred ---CCceEEEcCCCCc---HHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc----------
Q 005741 237 ---GVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK---------- 300 (679)
Q Consensus 237 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~---------- 300 (679)
++.+..++++... .........+.++|+|+||+++.+++.. +.+.++++|||||||++..
T Consensus 145 ~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp SCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccchhhhH
Confidence 5688888888766 3333344445599999999999887762 5678999999999987654
Q ss_pred -CCCCchHH-HHHHHHHHHhhccccccccC--CCCCEEEEEccCCh-hhHHHHHH-HcCCCCCceEEecccCCCCcEEEE
Q 005741 301 -WGHDFRPD-YRRLSVLRENFGANNLKSLK--FDIPLMALTATATI-QVREDILK-SLHMSKGTKFVLTSFFRPNLRFSV 374 (679)
Q Consensus 301 -~g~~f~~~-~~~l~~~~~~~~~~~~~~~~--~~~~~l~lSAT~~~-~~~~~i~~-~l~~~~~~~~~~~~~~r~~~~~~v 374 (679)
+| |.+. +..+......- ..+..++ .+.|+++||||+.+ .....+.. .+.+.. ........++....
T Consensus 221 ~~g--f~~~~i~~il~~l~~~--~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v----~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 221 MVG--IPEEIIRKAFSTIKQG--KIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV----GRLVSVARNITHVR 292 (1104)
T ss_dssp TSS--CCHHHHHHHHHHHHHT--SCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC----CBCCCCCCCEEEEE
T ss_pred hcC--CCHHHHHHHHHhcccc--hhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe----ccCCCCcCCceeEE
Confidence 66 6666 56654433200 0112222 57899999999533 33222222 221110 00000111111110
Q ss_pred EecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcc
Q 005741 375 KHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (679)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (679)
.
T Consensus 293 ~------------------------------------------------------------------------------- 293 (1104)
T 4ddu_A 293 I------------------------------------------------------------------------------- 293 (1104)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh
Q 005741 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534 (679)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~ 534 (679)
...+...+.+++... ++++||||++++.++.+++.|..
T Consensus 294 ----------------------------------------~~~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~ 331 (1104)
T 4ddu_A 294 ----------------------------------------SSRSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKR 331 (1104)
T ss_dssp ----------------------------------------SCCCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHH
T ss_pred ----------------------------------------ecCHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHh
Confidence 002333344444441 48999999999999999999999
Q ss_pred CCCcEE-EecCCCCHHHHHHHHHHHhCCCeeEEEE----ecccccCccccc-ccEEEEeCCCC
Q 005741 535 FGVKAA-AYNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLN-VRRIIHYGWPQ 591 (679)
Q Consensus 535 ~~~~~~-~~hg~~~~~~R~~v~~~F~~g~~~vLVa----T~~~~~GiDip~-v~~VI~~d~p~ 591 (679)
.|+.+. .+|| +|++ ++.|++|+.+|||| |+++++|||+|+ |++|||||+|.
T Consensus 332 ~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 332 FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999998 9999 2555 99999999999999 999999999999 99999999998
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.5e-41 Score=390.88 Aligned_cols=331 Identities=20% Similarity=0.252 Sum_probs=247.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~ 230 (679)
++++.+.+.+++ +||.+|+++|.++++. ++.++++++++|||||||++|.+|++. .++++||++|+++|+.|++
T Consensus 7 ~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~ 85 (720)
T 2zj8_A 7 RVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKF 85 (720)
T ss_dssp CSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH
Confidence 467778888875 7999999999999998 788999999999999999999998872 5899999999999999999
Q ss_pred HHHHh---cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchH
Q 005741 231 SKLSK---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (679)
Q Consensus 231 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~ 307 (679)
+++++ +++.+..+.++...... ..+.++|+|+||+++..++. .....+.++++|||||||++.+++ +..
T Consensus 86 ~~~~~l~~~g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~~~--~~~~~l~~~~~vIiDE~H~l~~~~--r~~ 157 (720)
T 2zj8_A 86 QEFQDWEKIGLRVAMATGDYDSKDE----WLGKYDIIIATAEKFDSLLR--HGSSWIKDVKILVADEIHLIGSRD--RGA 157 (720)
T ss_dssp HHTGGGGGGTCCEEEECSCSSCCCG----GGGGCSEEEECHHHHHHHHH--HTCTTGGGEEEEEEETGGGGGCTT--THH
T ss_pred HHHHHHHhcCCEEEEecCCCCcccc----ccCCCCEEEECHHHHHHHHH--cChhhhhcCCEEEEECCcccCCCc--ccH
Confidence 99975 37788887775543221 12358999999999988776 333446789999999999998755 455
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhH
Q 005741 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~ 387 (679)
.+..+.... +.+.++++||||++. ..++..|++. ..+.......++...+.... .. .+
T Consensus 158 ~~~~ll~~l-----------~~~~~ii~lSATl~n--~~~~~~~l~~----~~~~~~~rp~~l~~~~~~~~-~~--~~-- 215 (720)
T 2zj8_A 158 TLEVILAHM-----------LGKAQIIGLSATIGN--PEELAEWLNA----ELIVSDWRPVKLRRGVFYQG-FV--TW-- 215 (720)
T ss_dssp HHHHHHHHH-----------BTTBEEEEEECCCSC--HHHHHHHTTE----EEEECCCCSSEEEEEEEETT-EE--EE--
T ss_pred HHHHHHHHh-----------hcCCeEEEEcCCcCC--HHHHHHHhCC----cccCCCCCCCcceEEEEeCC-ee--ec--
Confidence 555543221 126889999999964 5778888852 22222221112221111100 00 00
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccc
Q 005741 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
....
T Consensus 216 ------------------------------------------------------------------------~~~~---- 219 (720)
T 2zj8_A 216 ------------------------------------------------------------------------EDGS---- 219 (720)
T ss_dssp ------------------------------------------------------------------------TTSC----
T ss_pred ------------------------------------------------------------------------cccc----
Confidence 0000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC------------
Q 005741 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF------------ 535 (679)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~------------ 535 (679)
. .........+.+.+. +.+++||||++++.++.++..|.+.
T Consensus 220 ----------------------~--~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~ 272 (720)
T 2zj8_A 220 ----------------------I--DRFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRA 272 (720)
T ss_dssp ----------------------E--EECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred ----------------------h--hhhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHH
Confidence 0 000011122222222 2579999999999999999999753
Q ss_pred ---------------------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----eC--
Q 005741 536 ---------------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----YG-- 588 (679)
Q Consensus 536 ---------------------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~d-- 588 (679)
..++..+||+|++++|+.+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 273 ~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~ 352 (720)
T 2zj8_A 273 LNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF 352 (720)
T ss_dssp HHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS
T ss_pred HHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC
Confidence 125899999999999999999999999999999999999999999999998 77
Q ss_pred --CCCCHHHHHHHhhccccCC--CCceEEEEecCCC
Q 005741 589 --WPQSLEAYYQEAGRAGRDG--HLADCVLYANLSS 620 (679)
Q Consensus 589 --~p~s~~~y~Qr~GRagR~G--~~g~~~~l~~~~~ 620 (679)
.|.+..+|+||+|||||.| ..|.|+++++..+
T Consensus 353 g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 353 GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 5899999999999999998 4799999998776
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-41 Score=393.39 Aligned_cols=357 Identities=16% Similarity=0.185 Sum_probs=243.7
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005741 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 167 ~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
..++| +|+++|.+|++.+++|+++++++|||+|||++|+++++. .++++||++||++|+.|+++.|.++...+..+
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 35688 599999999999999999999999999999999888864 68999999999999999999999864466666
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005741 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
.|+... ...++|+|+||+++.+++. .+...+.++++|||||||++.+++ +...+..+
T Consensus 160 tGd~~~--------~~~~~IvV~Tpe~L~~~L~--~~~~~l~~l~lVViDEaH~l~d~~--rg~~~e~i----------- 216 (1010)
T 2xgj_A 160 TGDITI--------NPDAGCLVMTTEILRSMLY--RGSEVMREVAWVIFDEVHYMRDKE--RGVVWEET----------- 216 (1010)
T ss_dssp CSSCEE--------CTTCSEEEEEHHHHHHHHH--HTCTTGGGEEEEEEETGGGGGCTT--THHHHHHH-----------
T ss_pred eCCCcc--------CCCCCEEEEcHHHHHHHHH--cCcchhhcCCEEEEechhhhcccc--hhHHHHHH-----------
Confidence 665543 2357999999999988776 444567889999999999998876 44455444
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCC--CCCceEEecccCCCCcEEEEEecCCccc-------hh-hhHhHHHHH
Q 005741 324 LKSLKFDIPLMALTATATIQVREDILKSLHM--SKGTKFVLTSFFRPNLRFSVKHSKTSSR-------AS-YKKDFCQLI 393 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~~r~~~~~~v~~~~~~~~-------~~-~~~~~~~~~ 393 (679)
+..+++..++++||||++.. .++..|++. ..+..++.......++...+........ .. ....+....
T Consensus 217 l~~l~~~~~il~LSATi~n~--~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNA--MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTH--HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCH--HHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 22234578999999998643 445555431 2233444444333344333322110000 00 011111111
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005741 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
...... ... . .. ... +. +...... ...
T Consensus 295 ~~l~~~--~~~------------~---~~-~~~-------~~-----------g~~~~~~-------k~~---------- 321 (1010)
T 2xgj_A 295 ASISNQ--IGD------------D---PN-STD-------SR-----------GKKGQTY-------KGG---------- 321 (1010)
T ss_dssp HTCC----------------------------------------------------------------------------
T ss_pred HHHhhh--hcc------------c---cc-ccc-------cc-----------ccccccc-------ccc----------
Confidence 111000 000 0 00 000 00 0000000 000
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCC----------------
Q 005741 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV---------------- 537 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~---------------- 537 (679)
. ...........++..+... ...++||||++++.|+.++..|...++
T Consensus 322 ------------~----~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 322 ------------S----AKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp -----------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ------------c----ccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 0 0000011222333333322 245899999999999999999977443
Q ss_pred -----------------------cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----eCC-
Q 005741 538 -----------------------KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----YGW- 589 (679)
Q Consensus 538 -----------------------~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~d~- 589 (679)
++..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2789999999999999999999999999999999999999999999999 999
Q ss_pred ---CCCHHHHHHHhhccccCCC--CceEEEEecCC
Q 005741 590 ---PQSLEAYYQEAGRAGRDGH--LADCVLYANLS 619 (679)
Q Consensus 590 ---p~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~ 619 (679)
|.++.+|+||+|||||.|+ .|.|+++++..
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 8999999999999999997 59999999855
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-40 Score=384.01 Aligned_cols=338 Identities=23% Similarity=0.278 Sum_probs=244.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~ 230 (679)
++++.+.+.+++ +||.+|+|+|.++++. +..++++++++|||||||++|.++++. .++++||++|+++|+.|++
T Consensus 14 ~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~ 92 (715)
T 2va8_A 14 KLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKY 92 (715)
T ss_dssp SSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHH
Confidence 467778888874 7999999999999999 778999999999999999999998862 6899999999999999999
Q ss_pred HHHHh---cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchH
Q 005741 231 SKLSK---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (679)
Q Consensus 231 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~ 307 (679)
+.++. +++.+....++...... .. +.++|+|+||+++..++. .....+.++++|||||||++.+++ +..
T Consensus 93 ~~~~~~~~~g~~v~~~~G~~~~~~~---~~-~~~~Iiv~Tpe~l~~~~~--~~~~~l~~~~~vIiDE~H~l~~~~--~~~ 164 (715)
T 2va8_A 93 LTFKDWELIGFKVAMTSGDYDTDDA---WL-KNYDIIITTYEKLDSLWR--HRPEWLNEVNYFVLDELHYLNDPE--RGP 164 (715)
T ss_dssp HHHGGGGGGTCCEEECCSCSSSCCG---GG-GGCSEEEECHHHHHHHHH--HCCGGGGGEEEEEECSGGGGGCTT--THH
T ss_pred HHHHHhhcCCCEEEEEeCCCCCchh---hc-CCCCEEEEcHHHHHHHHh--CChhHhhccCEEEEechhhcCCcc--cch
Confidence 99865 36777777765543321 12 358999999999988776 344447889999999999997655 555
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhH
Q 005741 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~ 387 (679)
.+..+..... +.++++||||++. ..++..+++. ..+.......++...+........
T Consensus 165 ~l~~i~~~~~------------~~~ii~lSATl~n--~~~~~~~l~~----~~~~~~~r~~~l~~~~~~~~~~~~----- 221 (715)
T 2va8_A 165 VVESVTIRAK------------RRNLLALSATISN--YKQIAKWLGA----EPVATNWRPVPLIEGVIYPERKKK----- 221 (715)
T ss_dssp HHHHHHHHHH------------TSEEEEEESCCTT--HHHHHHHHTC----EEEECCCCSSCEEEEEEEECSSTT-----
T ss_pred HHHHHHHhcc------------cCcEEEEcCCCCC--HHHHHHHhCC----CccCCCCCCCCceEEEEecCCccc-----
Confidence 5555532211 6789999999963 5778888863 223322222233322221110000
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccc
Q 005741 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
...+ .+...
T Consensus 222 ------------------~~~~------------------------------------------------~~~~~----- 230 (715)
T 2va8_A 222 ------------------EYNV------------------------------------------------IFKDN----- 230 (715)
T ss_dssp ------------------EEEE------------------------------------------------EETTS-----
T ss_pred ------------------ceee------------------------------------------------ecCcc-----
Confidence 0000 00000
Q ss_pred cccccccccCCCCCCCCCCccchhhcc-ccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC----------
Q 005741 468 WDVACGEFYGHSPHRDRDTDRSFERTD-LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG---------- 536 (679)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---------- 536 (679)
...... .......+.+.+. ..+++||||++++.++.+++.|.+..
T Consensus 231 ---------------------~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~ 286 (715)
T 2va8_A 231 ---------------------TTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENAL 286 (715)
T ss_dssp ---------------------CEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHH
T ss_pred ---------------------hhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHH
Confidence 000000 0011112222222 36799999999999999999998642
Q ss_pred --------------------------CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----
Q 005741 537 --------------------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH---- 586 (679)
Q Consensus 537 --------------------------~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~---- 586 (679)
..+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 287 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~ 366 (715)
T 2va8_A 287 SEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYR 366 (715)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--
T ss_pred HHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCee
Confidence 35899999999999999999999999999999999999999999999999
Q ss_pred eC-------CCCCHHHHHHHhhccccCCC--CceEEEEecCCC
Q 005741 587 YG-------WPQSLEAYYQEAGRAGRDGH--LADCVLYANLSS 620 (679)
Q Consensus 587 ~d-------~p~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~~ 620 (679)
|| .|.|..+|+||+|||||.|. .|.|+++++..+
T Consensus 367 ~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 367 FNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred ccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99 89999999999999999984 799999997665
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-41 Score=371.01 Aligned_cols=411 Identities=15% Similarity=0.180 Sum_probs=243.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhc-CC---ceEEEc
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKH-GV---TACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~-~~---~~~~~~ 244 (679)
+|+|||.+++++++.+ ++++++|||+|||++++++++. .++++|||+|+++|+.||.+++.++ +. .+..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999988 9999999999999999998875 4899999999999999999999996 55 666666
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005741 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
++..... ... ....++|+|+||+++.+.+. .+...+.++++||+||||++.+.. .+..+......
T Consensus 88 g~~~~~~-~~~-~~~~~~ivv~T~~~l~~~~~--~~~~~~~~~~~vIiDEaH~~~~~~-----~~~~~~~~~~~------ 152 (494)
T 1wp9_A 88 GEKSPEE-RSK-AWARAKVIVATPQTIENDLL--AGRISLEDVSLIVFDEAHRAVGNY-----AYVFIAREYKR------ 152 (494)
T ss_dssp SCSCHHH-HHH-HHHHCSEEEECHHHHHHHHH--TTSCCTTSCSEEEEETGGGCSTTC-----HHHHHHHHHHH------
T ss_pred CCcchhh-hhh-hccCCCEEEecHHHHHHHHh--cCCcchhhceEEEEECCcccCCCC-----cHHHHHHHHHh------
Confidence 6555432 222 22347999999999987665 444567889999999999997532 22233222221
Q ss_pred cccCCCCCEEEEEccCCh--hhHHHHHHHcCCCCCceEEec-------ccCC-CCcEEEEEecCCccchhhhHhHHHHHH
Q 005741 325 KSLKFDIPLMALTATATI--QVREDILKSLHMSKGTKFVLT-------SFFR-PNLRFSVKHSKTSSRASYKKDFCQLID 394 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~--~~~~~i~~~l~~~~~~~~~~~-------~~~r-~~~~~~v~~~~~~~~~~~~~~~~~~~~ 394 (679)
..+..++++|||||.. ....+++..++.... .... .+.. ....+..... .. . ...+...+.
T Consensus 153 --~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~ 223 (494)
T 1wp9_A 153 --QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHI--EYRSENSPDVRPYVKGIRFEWVRVDL-PE---I-YKEVRKLLR 223 (494)
T ss_dssp --HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEE--EECCTTSTTTGGGCCCCCEEEEEECC-CH---H-HHHHHHHHH
T ss_pred --cCCCCeEEEEecCCCCCcHHHHHHHHhcChhee--eccCCCcHHHHHhcCCCceeEEecCC-cH---H-HHHHHHHHH
Confidence 1236889999999983 244456666654321 1111 1111 1111111111 11 1 111111111
Q ss_pred HHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh------------hcc
Q 005741 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF------------LEN 462 (679)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------l~~ 462 (679)
.....+........+........ ....+.. .. ........ ............. +..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (494)
T 1wp9_A 224 EMLRDALKPLAETGLLESSSPDI----PKKEVLR---AG-QIINEEMA----KGNHDLRGLLLYHAMALKLHHAIELLET 291 (494)
T ss_dssp HHHHHHHHHHHHHTSSSCCCTTS----CHHHHHH---HH-HHHHHHHT----TTCCSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCc----chhHHHH---HH-HHHHHHhh----ccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 11100000000000000000000 0000000 00 00000000 0000000000000 000
Q ss_pred CCccccccccccccCCCCC----------CCCCCccc-------hhhccccCchHHHhhhccCC---CCCCcEEEEeCch
Q 005741 463 DSVDDWDVACGEFYGHSPH----------RDRDTDRS-------FERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTR 522 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~ 522 (679)
.....+......+...... ........ ........|...+.+.|.+. ....++||||+++
T Consensus 292 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 371 (494)
T 1wp9_A 292 QGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYR 371 (494)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCH
T ss_pred hcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccH
Confidence 0000000000000000000 00000000 00002334556666666654 3577999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEecC--------CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHH
Q 005741 523 KETLSIAKYLCGFGVKAAAYNA--------SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594 (679)
Q Consensus 523 ~~~~~l~~~L~~~~~~~~~~hg--------~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~ 594 (679)
+.++.+++.|...|+.+..+|| +|+.++|+.+++.|++|+.+|||||+++++|||+|++++||+||+|+++.
T Consensus 372 ~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~ 451 (494)
T 1wp9_A 372 ETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAI 451 (494)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCceEEEEecCCCC
Q 005741 595 AYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 595 ~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
.|+||+||+||.|+ |.+++|+...+.
T Consensus 452 ~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 452 RSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp HHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred HHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 99999999999998 999999987654
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.4e-40 Score=365.31 Aligned_cols=374 Identities=16% Similarity=0.152 Sum_probs=243.9
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc----C
Q 005741 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH----G 237 (679)
Q Consensus 165 l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~----~ 237 (679)
.++.+|+ .|+|+|..+++.+++|+ |+.++||+|||++|.+|++ ..++.++||+||++||.|.++++..+ |
T Consensus 76 ~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 76 SRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3346799 99999999999999998 9999999999999999998 36889999999999999988887764 8
Q ss_pred CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHH----HHHHhhcCceEEEeecccccc-cCCCCch-----
Q 005741 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVS-KWGHDFR----- 306 (679)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~----~~~~~~~~~~lvViDEaH~l~-~~g~~f~----- 306 (679)
+++..+.+|..... .. ....++|+|+||+++ .+++... .+...++.+.++||||||+++ +.+ +.
T Consensus 153 l~v~~i~gg~~~~~-r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea--~tplIis 227 (844)
T 1tf5_A 153 LTVGLNLNSMSKDE-KR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA--RTPLIIS 227 (844)
T ss_dssp CCEEECCTTSCHHH-HH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT--TCEEEEE
T ss_pred CeEEEEeCCCCHHH-HH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc--ccchhhc
Confidence 89888888765432 22 223489999999999 5655521 123446789999999999997 654 22
Q ss_pred -------HHHHHHHHHHHhhcc-ccccccCCCCCEE-----------------EEEccCCh---hhHHHHHHHcCCCCCc
Q 005741 307 -------PDYRRLSVLRENFGA-NNLKSLKFDIPLM-----------------ALTATATI---QVREDILKSLHMSKGT 358 (679)
Q Consensus 307 -------~~~~~l~~~~~~~~~-~~~~~~~~~~~~l-----------------~lSAT~~~---~~~~~i~~~l~~~~~~ 358 (679)
..+..+..+...++. ..+..-+...|++ ++|||.+. .+...+....-+..+.
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 234445444444321 0111112356676 88999653 2222222211121111
Q ss_pred -eE-------EecccCCC-------------------CcE-------EE-EEec--------CCccchhhhHhHHHHHHH
Q 005741 359 -KF-------VLTSFFRP-------------------NLR-------FS-VKHS--------KTSSRASYKKDFCQLIDI 395 (679)
Q Consensus 359 -~~-------~~~~~~r~-------------------~~~-------~~-v~~~--------~~~~~~~~~~~~~~~~~~ 395 (679)
.+ +...+... .+. .. +... -....++......++...
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 11 11111000 000 00 0000 000000111123444455
Q ss_pred HhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccc
Q 005741 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEF 475 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (679)
|...-...+..........
T Consensus 388 Y~l~vv~IPtn~p~~r~d~------------------------------------------------------------- 406 (844)
T 1tf5_A 388 YNMQVVTIPTNRPVVRDDR------------------------------------------------------------- 406 (844)
T ss_dssp HCCCEEECCCSSCCCCEEC-------------------------------------------------------------
T ss_pred hCCceEEecCCCCcccccC-------------------------------------------------------------
Confidence 5433111110000000000
Q ss_pred cCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 005741 476 YGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV 554 (679)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v 554 (679)
. .........|...+++.+.+. ....++||||+|++.++.|+..|...|+.+..+||++.+.+|..+
T Consensus 407 -----------~-d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii 474 (844)
T 1tf5_A 407 -----------P-DLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQII 474 (844)
T ss_dssp -----------C-CEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHH
T ss_pred -----------C-cEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHH
Confidence 0 000001122444455555442 235689999999999999999999999999999999988888877
Q ss_pred HHHHhCCCeeEEEEecccccCcccc--------cccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 555 HTEFHENKLEVVVATIAFGMGIDKL--------NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 555 ~~~F~~g~~~vLVaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
.+.|+.| .|+|||++++||+||+ ++.+||+|+.|.|...|+||+|||||.|++|.+++|++..|.
T Consensus 475 ~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 475 EEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 7777766 6999999999999999 788999999999999999999999999999999999998774
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-40 Score=406.96 Aligned_cols=332 Identities=22% Similarity=0.240 Sum_probs=244.5
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhhhhhhhc--------------cCCeEEEEcCchHHHHHHHHHHH
Q 005741 170 GHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL--------------TGKVVVVISPLISLMHDQCSKLS 234 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~~lp~l~--------------~~~~vLvl~Pt~~L~~q~~~~l~ 234 (679)
||++|+++|.++++.++. ++|++++||||||||++|.++++. .+.++|||+|+++|+.|+.+.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 689999999999999999999873 26789999999999999999887
Q ss_pred h----cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CCCCchHHH
Q 005741 235 K----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDY 309 (679)
Q Consensus 235 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g~~f~~~~ 309 (679)
+ .|+.+..++|+...... ....++|+|+|||++..++........++++++|||||+|.+.+ +|..++..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~----~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE----EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT----TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc----ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHH
Confidence 6 37888888776543221 12358999999999876665322233468899999999998864 443344444
Q ss_pred HHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCC-ceEEecccCCC-CcEEEEEecCCccchhhhH
Q 005741 310 RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG-TKFVLTSFFRP-NLRFSVKHSKTSSRASYKK 387 (679)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~-~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~~ 387 (679)
.++...... .++++|+++||||++ +.+++.+||+.... ..++....+|| ++...+....... ...
T Consensus 232 ~rl~~~~~~--------~~~~~riI~LSATl~--N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~---~~~ 298 (1724)
T 4f92_B 232 ARAIRNIEM--------TQEDVRLIGLSATLP--NYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKK---AIK 298 (1724)
T ss_dssp HHHHHHHHH--------HTCCCEEEEEECSCT--THHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCC---HHH
T ss_pred HHHHHHHHh--------CCCCCcEEEEecccC--CHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcc---hhh
Confidence 444333222 234789999999994 57889999975432 22344444454 3332221111110 000
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccc
Q 005741 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
.+..+
T Consensus 299 ~~~~~--------------------------------------------------------------------------- 303 (1724)
T 4f92_B 299 RFQIM--------------------------------------------------------------------------- 303 (1724)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred hhHHH---------------------------------------------------------------------------
Confidence 00000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh-------------
Q 005741 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------- 534 (679)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~------------- 534 (679)
...+.+.+.+....+++||||++|+.|+.+|+.|.+
T Consensus 304 -------------------------------~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~ 352 (1724)
T 4f92_B 304 -------------------------------NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLR 352 (1724)
T ss_dssp -------------------------------HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSS
T ss_pred -------------------------------HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcc
Confidence 011122333444467999999999999999988864
Q ss_pred ------------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----
Q 005741 535 ------------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH---- 586 (679)
Q Consensus 535 ------------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~---- 586 (679)
...+++++||+|++++|..+++.|++|.++|||||+++++|||+|++++||.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~ 432 (1724)
T 4f92_B 353 EGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 432 (1724)
T ss_dssp CCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEE
T ss_pred cchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEE
Confidence 1346899999999999999999999999999999999999999999999995
Q ss_pred eC------CCCCHHHHHHHhhccccCCC--CceEEEEecCCCCCcc
Q 005741 587 YG------WPQSLEAYYQEAGRAGRDGH--LADCVLYANLSSMPTL 624 (679)
Q Consensus 587 ~d------~p~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~~~~~~ 624 (679)
|+ .|.++.+|+||+|||||.|. .|.++++++..+...+
T Consensus 433 ~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 433 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp EETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred ecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 44 35689999999999999875 6999999988876543
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.1e-40 Score=401.63 Aligned_cols=329 Identities=21% Similarity=0.257 Sum_probs=244.0
Q ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHh-c----CC
Q 005741 170 GHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSK-H----GV 238 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~-~----~~ 238 (679)
+|+.++|+|.++++.++.+ +|++++||||||||++|.+|++. .++++||++|+++|+.|.++.|.+ + ++
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 6888999999999999864 68999999999999999999873 477999999999999999998865 2 56
Q ss_pred ceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC-CCCchHHHHHHHHHHH
Q 005741 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW-GHDFRPDYRRLSVLRE 317 (679)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~-g~~f~~~~~~l~~~~~ 317 (679)
++..+.|+... . .. ....++|+|+|||++..++..+.....+.++++||+||+|.+.+. |..++..+.++..+..
T Consensus 1003 ~V~~ltGd~~~-~--~~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~ 1078 (1724)
T 4f92_B 1003 KVVLLTGETST-D--LK-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISS 1078 (1724)
T ss_dssp CEEECCSCHHH-H--HH-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCc-c--hh-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHh
Confidence 66666654322 1 11 223479999999999877764444445789999999999999752 2222333333333322
Q ss_pred hhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchhhhHhHHHHHHHH
Q 005741 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKKDFCQLIDIY 396 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 396 (679)
..+++.|+++||||++ +..++.+||+......+...+..|| ++...+......... ..+..
T Consensus 1079 --------~~~~~~riI~lSATl~--N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~---~~~~~----- 1140 (1724)
T 4f92_B 1079 --------QIERPIRIVALSSSLS--NAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQ---TRLLS----- 1140 (1724)
T ss_dssp --------TTSSCCEEEEEESCBT--THHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHH---HHHHT-----
T ss_pred --------hcCCCceEEEEeCCCC--CHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCch---hhhhh-----
Confidence 2345789999999994 6789999999877666666666665 444444332211110 00000
Q ss_pred hhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccccccc
Q 005741 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFY 476 (679)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (679)
T Consensus 1141 -------------------------------------------------------------------------------- 1140 (1724)
T 4f92_B 1141 -------------------------------------------------------------------------------- 1140 (1724)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----------------------
Q 005741 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---------------------- 534 (679)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------------------- 534 (679)
....+...+.+..+.+++||||++++.|+.++..|..
T Consensus 1141 ---------------------~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~ 1199 (1724)
T 4f92_B 1141 ---------------------MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPY 1199 (1724)
T ss_dssp ---------------------THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHH
T ss_pred ---------------------hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHH
Confidence 0001112222233467999999999999999887753
Q ss_pred ------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----e------CCCCC
Q 005741 535 ------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----Y------GWPQS 592 (679)
Q Consensus 535 ------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~------d~p~s 592 (679)
...++..+||+|++.+|+.+++.|++|.++|||||+++++|||+|+..+||. | ..|.+
T Consensus 1200 l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s 1279 (1724)
T 4f92_B 1200 LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP 1279 (1724)
T ss_dssp HTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECC
T ss_pred HhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCC
Confidence 1346899999999999999999999999999999999999999999999983 2 34678
Q ss_pred HHHHHHHhhccccCCC--CceEEEEecCCCC
Q 005741 593 LEAYYQEAGRAGRDGH--LADCVLYANLSSM 621 (679)
Q Consensus 593 ~~~y~Qr~GRagR~G~--~g~~~~l~~~~~~ 621 (679)
+.+|+||+|||||.|. .|.|++++...+.
T Consensus 1280 ~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~ 1310 (1724)
T 4f92_B 1280 IYDVLQMVGHANRPLQDDEGRCVIMCQGSKK 1310 (1724)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEEEEGGGH
T ss_pred HHHHHHhhccccCCCCCCceEEEEEecchHH
Confidence 9999999999999997 6999999987654
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-40 Score=374.51 Aligned_cols=309 Identities=18% Similarity=0.211 Sum_probs=225.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHH
Q 005741 161 VNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g------~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~ 231 (679)
+...+.+.++| +||++|.++++.++++ +++++++|||||||++|++|++. .+.+++|++||++|+.|+++
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~ 435 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYR 435 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH
Confidence 33444457799 8999999999999865 59999999999999999999875 58999999999999999999
Q ss_pred HHHhc----CCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005741 232 KLSKH----GVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 232 ~l~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.+.++ ++.+..++++...... ......+.++|+|+||+.+.+ ...+.++++|||||+|++...
T Consensus 436 ~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~--- 505 (780)
T 1gm5_A 436 RTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVK--- 505 (780)
T ss_dssp HHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC------
T ss_pred HHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHH---
Confidence 99875 6888888777665432 223345569999999987643 345788999999999997321
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEec-ccCCCCcEEEEEecCCccch
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~r~~~~~~v~~~~~~~~~ 383 (679)
.+. .+.......++++|||||.+...... .++.. +..++.. +..+.++...+.
T Consensus 506 qr~---------------~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~-~~s~i~~~p~~r~~i~~~~~-------- 559 (780)
T 1gm5_A 506 QRE---------------ALMNKGKMVDTLVMSATPIPRSMALA--FYGDL-DVTVIDEMPPGRKEVQTMLV-------- 559 (780)
T ss_dssp --C---------------CCCSSSSCCCEEEEESSCCCHHHHHH--HTCCS-SCEEECCCCSSCCCCEECCC--------
T ss_pred HHH---------------HHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCc-ceeeeeccCCCCcceEEEEe--------
Confidence 110 12333447899999999977654422 12211 1111100 001111110000
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005741 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 560 -------------------------------------------------------------------------------- 559 (780)
T 1gm5_A 560 -------------------------------------------------------------------------------- 559 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCch--------hHHHHHHHHHHh
Q 005741 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTR--------KETLSIAKYLCG 534 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~--------~~~~~l~~~L~~ 534 (679)
.......+++.+.+.. ...+++|||+++ ..++.+++.|..
T Consensus 560 -------------------------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~ 608 (780)
T 1gm5_A 560 -------------------------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK 608 (780)
T ss_dssp -------------------------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGG
T ss_pred -------------------------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHh
Confidence 0011122223332222 256899999866 457888888987
Q ss_pred ---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC-CHHHHHHHhhccccCCCCc
Q 005741 535 ---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLA 610 (679)
Q Consensus 535 ---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~g 610 (679)
.++.+..+||+|++++|+.++++|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|+.|
T Consensus 609 ~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g 688 (780)
T 1gm5_A 609 EVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEA 688 (780)
T ss_dssp SCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTC
T ss_pred hhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCC
Confidence 478999999999999999999999999999999999999999999999999999996 7899999999999999999
Q ss_pred eEEEEec
Q 005741 611 DCVLYAN 617 (679)
Q Consensus 611 ~~~~l~~ 617 (679)
.|+++++
T Consensus 689 ~~ill~~ 695 (780)
T 1gm5_A 689 YCFLVVG 695 (780)
T ss_dssp EEECCCC
T ss_pred EEEEEEC
Confidence 9999987
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.7e-40 Score=388.00 Aligned_cols=285 Identities=19% Similarity=0.200 Sum_probs=202.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHh
Q 005741 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 160 ~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.+.+.+.+.+||. | ++|.++++.+++|+|+++++|||||||+ |++|++. .++++|||+||++|+.|+.+.+.+
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 3556677789998 9 9999999999999999999999999998 8888874 578999999999999999999987
Q ss_pred c----CC----ceEEEcCCCCcHHH--HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 236 H----GV----TACFLGSGQPDNKV--EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 236 ~----~~----~~~~~~~~~~~~~~--~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
+ ++ .+..++|+...... ....+.. ++|+|+||++|.+++.. +.++++|||||||++++||+.+
T Consensus 122 l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~~~~~~ 194 (1054)
T 1gku_B 122 YAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILKASKNV 194 (1054)
T ss_dssp HHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHTSTHHH
T ss_pred HHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhhccccH
Confidence 5 45 66777777665442 2233444 89999999999987662 6689999999999999876555
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHH---HHHH-HcCCCCCceEEecccCCCCcEEEEEecCCcc
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRE---DILK-SLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~---~i~~-~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~ 381 (679)
+..+..++. ........++...|++++|||++.. .. .+.. ...+... ......+++.....
T Consensus 195 ~~i~~~lgf----~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~----~~~~~~~~i~~~~~------ 259 (1054)
T 1gku_B 195 DKLLHLLGF----HYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG----SSRITVRNVEDVAV------ 259 (1054)
T ss_dssp HHHHHHTTE----EEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS----CCEECCCCEEEEEE------
T ss_pred HHHHHHhCc----chhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc----CcccCcCCceEEEe------
Confidence 555544321 0000012234578899999999775 21 1111 1110000 00000000000000
Q ss_pred chhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhc
Q 005741 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (679)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (679)
T Consensus 260 -------------------------------------------------------------------------------- 259 (1054)
T 1gku_B 260 -------------------------------------------------------------------------------- 259 (1054)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEE
Q 005741 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541 (679)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~ 541 (679)
...+...+.+.+... .+++||||++++.++.+++.|... +.+..
T Consensus 260 ---------------------------------~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~ 303 (1054)
T 1gku_B 260 ---------------------------------NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGI 303 (1054)
T ss_dssp ---------------------------------SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEE
T ss_pred ---------------------------------chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeE
Confidence 011222233333333 568999999999999999999988 99999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCeeEEEE----ecccccCcccccc-cEEEEeCCC
Q 005741 542 YNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLNV-RRIIHYGWP 590 (679)
Q Consensus 542 ~hg~~~~~~R~~v~~~F~~g~~~vLVa----T~~~~~GiDip~v-~~VI~~d~p 590 (679)
+||++ ..+++.|++|+.+|||| |+++++|||+|+| ++||+||+|
T Consensus 304 lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 304 VTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp CTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred EeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99998 47889999999999999 8999999999996 999999999
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.4e-38 Score=376.15 Aligned_cols=311 Identities=20% Similarity=0.225 Sum_probs=229.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHH
Q 005741 161 VNSLLKKHFGHSSLKNFQKEALSAWLA----HH--DCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~----g~--d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~ 231 (679)
....+...|+| ++||+|.+|++.+++ ++ |+++++|||+|||++|+++++ ..+++++||+||++|+.|+++
T Consensus 592 ~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 592 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp HHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHH
Confidence 33445567888 579999999999986 65 999999999999999987775 468899999999999999999
Q ss_pred HHHhc----CCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005741 232 KLSKH----GVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 232 ~l~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.+.++ ++.+..+.+....... ......+.++|+|+||+.+. +...+.++++|||||||++.
T Consensus 671 ~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g----- 738 (1151)
T 2eyq_A 671 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFG----- 738 (1151)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSC-----
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcC-----
Confidence 99863 5667777665444322 22333456999999998653 23457889999999999963
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEe-cccCCCCcEEEEEecCCccch
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~r~~~~~~v~~~~~~~~~ 383 (679)
......+..+ +.+.++++|||||.+.........+ . +..++. .+..+.++...+...
T Consensus 739 -~~~~~~l~~l------------~~~~~vl~lSATp~p~~l~~~~~~~--~-~~~~i~~~~~~r~~i~~~~~~~------ 796 (1151)
T 2eyq_A 739 -VRHKERIKAM------------RANVDILTLTATPIPRTLNMAMSGM--R-DLSIIATPPARRLAVKTFVREY------ 796 (1151)
T ss_dssp -HHHHHHHHHH------------HTTSEEEEEESSCCCHHHHHHHTTT--S-EEEECCCCCCBCBCEEEEEEEC------
T ss_pred -hHHHHHHHHh------------cCCCCEEEEcCCCChhhHHHHHhcC--C-CceEEecCCCCccccEEEEecC------
Confidence 1222222221 2267899999999877655443322 1 111111 111111111111100
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005741 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 797 -------------------------------------------------------------------------------- 796 (1151)
T 2eyq_A 797 -------------------------------------------------------------------------------- 796 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--CCcEEE
Q 005741 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAA 541 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~ 541 (679)
.........+.+...+++++|||++++.++.+++.|.+. +..+..
T Consensus 797 ---------------------------------~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~ 843 (1151)
T 2eyq_A 797 ---------------------------------DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 843 (1151)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEE
T ss_pred ---------------------------------CHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEE
Confidence 000000111112223679999999999999999999987 889999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC-CCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005741 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW-PQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 542 ~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~-p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
+||+|++++|++++++|++|+++|||||+++++|||+|++++||+++. ++++.+|+||+||+||.|+.|.|+++++..
T Consensus 844 lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 844 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999999999999999999999999999999999999998 579999999999999999999999998754
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.3e-39 Score=357.71 Aligned_cols=323 Identities=14% Similarity=0.096 Sum_probs=220.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcC----CceEEEc
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHG----VTACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~----~~~~~~~ 244 (679)
+|+++|.+|++.+++++++++++|||+|||++|++++.. .++++|||+||++|+.||.+++.+++ ..+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988874 34599999999999999999999873 3556666
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005741 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
++...... ..+..+|+|+||+.+... ....+.++++|||||||++.. ..+..+ +
T Consensus 193 ~~~~~~~~----~~~~~~I~i~T~~~l~~~-----~~~~~~~~~liIiDE~H~~~~------~~~~~i-----------l 246 (510)
T 2oca_A 193 GGASKDDK----YKNDAPVVVGTWQTVVKQ-----PKEWFSQFGMMMNDECHLATG------KSISSI-----------I 246 (510)
T ss_dssp GGCCTTGG----GCTTCSEEEEEHHHHTTS-----CGGGGGGEEEEEEETGGGCCH------HHHHHH-----------G
T ss_pred cCCccccc----cccCCcEEEEeHHHHhhc-----hhhhhhcCCEEEEECCcCCCc------ccHHHH-----------H
Confidence 66544321 446689999999976542 123467899999999999863 334443 3
Q ss_pred cccCCCCCEEEEEccCChhhHH--HHHHHcCCC----CCceEEecccCCCCcEEEEEecCCccchh-hh--HhHHHHHHH
Q 005741 325 KSLKFDIPLMALTATATIQVRE--DILKSLHMS----KGTKFVLTSFFRPNLRFSVKHSKTSSRAS-YK--KDFCQLIDI 395 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~--~i~~~l~~~----~~~~~~~~~~~r~~~~~~v~~~~~~~~~~-~~--~~~~~~~~~ 395 (679)
+.+....++++|||||+..... .+...++.. .........+..+ ..+............ .. ..+......
T Consensus 247 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 247 SGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTE-LKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp GGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------C-CEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred HhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCC-ceEEEEeecCChHHhccccccchHHHHHH
Confidence 3444577899999999655322 112222210 0000000011111 111111100000000 00 000000000
Q ss_pred HhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccc
Q 005741 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEF 475 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (679)
T Consensus 326 -------------------------------------------------------------------------------- 325 (510)
T 2oca_A 326 -------------------------------------------------------------------------------- 325 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCccchhhccccCchHHHhhhccCCC--CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHH
Q 005741 476 YGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553 (679)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~ 553 (679)
......+...+.+.+.... ...++|||++ +++++.+++.|.+.+..+..+||+|++++|+.
T Consensus 326 ----------------~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~ 388 (510)
T 2oca_A 326 ----------------ITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNI 388 (510)
T ss_dssp ----------------HHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHH
T ss_pred ----------------HhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHH
Confidence 0000011112222222221 1335667766 88999999999999889999999999999999
Q ss_pred HHHHHhCCCeeEEEEe-cccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005741 554 VHTEFHENKLEVVVAT-IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 554 v~~~F~~g~~~vLVaT-~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
+++.|++|+.+||||| +++++|||+|++++||+++.|+++..|+|++||+||.|+.|.++++++..
T Consensus 389 i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 389 MKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp HHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred HHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 9999999999999999 99999999999999999999999999999999999999988666666533
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.4e-39 Score=353.11 Aligned_cols=351 Identities=14% Similarity=0.142 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCc-eEEEcCCCCcHH
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT-ACFLGSGQPDNK 251 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~-~~~~~~~~~~~~ 251 (679)
+|+|+|.++++++++++++++++|||+|||++|+.++...++++|||+|+++|+.||.+++.++++. +..+.++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 7999999999999999999999999999999999999888999999999999999999999999988 7777665432
Q ss_pred HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCC
Q 005741 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (679)
Q Consensus 252 ~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~ 331 (679)
..+|+|+||+++...+..+ ..++++|||||||++.+.+ |+. + .+.+ +..
T Consensus 171 --------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~--~~~----~---~~~~---------~~~ 219 (472)
T 2fwr_A 171 --------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES--YVQ----I---AQMS---------IAP 219 (472)
T ss_dssp --------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTT--THH----H---HHTC---------CCS
T ss_pred --------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChH--HHH----H---HHhc---------CCC
Confidence 3689999999887655421 2469999999999998654 443 2 2222 156
Q ss_pred CEEEEEccCChhhHH--HHHHHcCCCCCceEEe-------cccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccc
Q 005741 332 PLMALTATATIQVRE--DILKSLHMSKGTKFVL-------TSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (679)
Q Consensus 332 ~~l~lSAT~~~~~~~--~i~~~l~~~~~~~~~~-------~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (679)
++++|||||...... .+..+++ ..+.. ..+..+.....+........ ...+..+...+......
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVG----GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDE---RVEYEKREKVYKQFLRA 292 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTC----CEEEECCHHHHTSCCCCSEEECCEEECCCHHH---HHHTTTTTHHHHSCSSS
T ss_pred eEEEEecCccCCCCHHHHHHHHhC----CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHH---HHHHHHHHHHHHHHHHh
Confidence 799999999743211 1222221 11111 01111111111110000000 00000000000000000
Q ss_pred cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCC
Q 005741 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (679)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (679)
..+ ..........+..... .............
T Consensus 293 ----~~~--------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------------- 324 (472)
T 2fwr_A 293 ----RGI--------------------TLRRAEDFNKIVMASG--YDERAYEALRAWE---------------------- 324 (472)
T ss_dssp ----CCC--------------------TTTCCSSSTTTTTTTC--CSSSSSTTTHHHH----------------------
T ss_pred ----cCc--------------------cccchhhHHHHHHHhc--cCHHHHHHHHHHH----------------------
Confidence 000 0000000000000000 0000000000000
Q ss_pred CCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 005741 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562 (679)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~ 562 (679)
...........+...+.+.+.+ ....++||||++++.++.+++.|. +..+||+++..+|+++++.|++|+
T Consensus 325 ----~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 325 ----EARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp ----HHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred ----HHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 0000011223344555555555 457799999999999999999983 678999999999999999999999
Q ss_pred eeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCC-ceEEE--EecCCCC
Q 005741 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL-ADCVL--YANLSSM 621 (679)
Q Consensus 563 ~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~-g~~~~--l~~~~~~ 621 (679)
++|||||+++++|+|+|++++||+++.|+|+..|+||+||+||.|+. +.+++ |++....
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ 456 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTG 456 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999965 44443 5554433
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.7e-37 Score=343.45 Aligned_cols=375 Identities=16% Similarity=0.158 Sum_probs=226.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhc---
Q 005741 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH--- 236 (679)
Q Consensus 163 ~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~--- 236 (679)
++-.+.+|. .|+++|..+++.+++|+ |+.++||+|||++|.+|++. .+..++||+||++||.|.++++..+
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 333445686 89999999999999998 99999999999999999973 6789999999999999998887764
Q ss_pred -CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHHH----HHHhhcCceEEEeecccccc-cCCC------
Q 005741 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQ----RLAESRGIALFAIDEVHCVS-KWGH------ 303 (679)
Q Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~~----~~~~~~~~~lvViDEaH~l~-~~g~------ 303 (679)
++++..+.+|.... ... ...+++|+|+||+++ .+++.... +...++++.++|+||||+++ +.+.
T Consensus 142 lgl~v~~i~GG~~~~--~r~-~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 142 LGLTVGINLPGMPAP--AKR-EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp TTCCEEECCTTCCHH--HHH-HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred cCCeEEEEeCCCCHH--HHH-HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 88888888877643 222 223489999999999 57666211 12445889999999999998 5441
Q ss_pred -------CchHHHHHHHHHHHhhccc------------cccccCCCCCEE------------------------EEEccC
Q 005741 304 -------DFRPDYRRLSVLRENFGAN------------NLKSLKFDIPLM------------------------ALTATA 340 (679)
Q Consensus 304 -------~f~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~l------------------------~lSAT~ 340 (679)
.|...+..+ ...++.. .+..-+...+++ ++|||.
T Consensus 219 g~~~~~~~~y~~i~~i---v~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKI---IPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHH---HHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 122233333 2222110 000001123332 788886
Q ss_pred Ch---hhHHHHHHHcCCCCCc--------eEEeccc--------------------------CCCCcEEE-EEec-----
Q 005741 341 TI---QVREDILKSLHMSKGT--------KFVLTSF--------------------------FRPNLRFS-VKHS----- 377 (679)
Q Consensus 341 ~~---~~~~~i~~~l~~~~~~--------~~~~~~~--------------------------~r~~~~~~-v~~~----- 377 (679)
+. .+...+....-+..+. .++...+ ...+.... +...
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRL 375 (853)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhh
Confidence 43 1111110000000000 0000000 00000000 0000
Q ss_pred ---CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcc
Q 005741 378 ---KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (679)
Q Consensus 378 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (679)
-....++....-.++...|...-...+..........
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~---------------------------------------- 415 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDL---------------------------------------- 415 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEEC----------------------------------------
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecC----------------------------------------
Confidence 0000111122234455555444322211110000000
Q ss_pred hhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHH
Q 005741 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLC 533 (679)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~ 533 (679)
. .........|...+++.+.+.. ...++||||+|++.++.|++.|.
T Consensus 416 --------------------------------~-d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 416 --------------------------------P-DLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp --------------------------------C-CEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred --------------------------------C-cEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0 0000111234455555554432 35689999999999999999999
Q ss_pred hCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCccccc--------------------------------c
Q 005741 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN--------------------------------V 581 (679)
Q Consensus 534 ~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~--------------------------------v 581 (679)
..|+.+..+||++.+.++..+.++|+.| .|+|||++++||+||+. |
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999998888999988 69999999999999987 3
Q ss_pred -----cEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 582 -----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 582 -----~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
.+||+|+.|.|...|.||+|||||.|.+|.+++|++..|.
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999987763
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.3e-38 Score=341.26 Aligned_cols=284 Identities=15% Similarity=0.109 Sum_probs=204.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005741 170 GHSSLKNFQKEALSAWLAHHDC-LVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~g~d~-iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
|+.+++|+|+ +++.++++++. ++++|||||||++|++|++. .++++||++||++|+.|+.+.+.... +....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~--v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLP--IRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCce--eeeee
Confidence 6778999985 79999999887 89999999999999999863 57899999999999999999987543 22221
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005741 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
..... .......|.++|++.+.+.+. ....+.++++|||||||++ +.+ +......+.. ..
T Consensus 78 ~~~~~------~~~~~~~i~~~t~~~l~~~l~---~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~~~-~~------- 137 (451)
T 2jlq_A 78 PAVKS------DHTGREIVDLMCHATFTTRLL---SSTRVPNYNLIVMDEAHFT-DPC--SVAARGYIST-RV------- 137 (451)
T ss_dssp TTCSC------CCCSSCCEEEEEHHHHHHHHH---HCSCCCCCSEEEEETTTCC-SHH--HHHHHHHHHH-HH-------
T ss_pred ccccc------cCCCCceEEEEChHHHHHHhh---CcccccCCCEEEEeCCccC-Ccc--hHHHHHHHHH-hh-------
Confidence 11111 122346799999998865443 2245678999999999987 211 2222222211 11
Q ss_pred cccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccc
Q 005741 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGE 404 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (679)
..++.|+++||||++...... + ........+.......
T Consensus 138 --~~~~~~~i~~SAT~~~~~~~~----~-------------~~~~~~~~~~~~~p~~----------------------- 175 (451)
T 2jlq_A 138 --EMGEAAAIFMTATPPGSTDPF----P-------------QSNSPIEDIEREIPER----------------------- 175 (451)
T ss_dssp --HTTSCEEEEECSSCTTCCCSS----C-------------CCSSCEEEEECCCCSS-----------------------
T ss_pred --cCCCceEEEEccCCCccchhh----h-------------cCCCceEecCccCCch-----------------------
Confidence 123689999999997543210 0 0000001100000000
Q ss_pred cccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCC
Q 005741 405 KEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDR 484 (679)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 484 (679)
.|
T Consensus 176 --------------------------------------------------------------~~---------------- 177 (451)
T 2jlq_A 176 --------------------------------------------------------------SW---------------- 177 (451)
T ss_dssp --------------------------------------------------------------CC----------------
T ss_pred --------------------------------------------------------------hh----------------
Confidence 00
Q ss_pred CCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCee
Q 005741 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564 (679)
Q Consensus 485 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~ 564 (679)
..+.+.+.+. .+++||||++++.++.+++.|...++.+..+||++. +.+++.|++|+.+
T Consensus 178 ---------------~~~~~~l~~~--~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~ 236 (451)
T 2jlq_A 178 ---------------NTGFDWITDY--QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD 236 (451)
T ss_dssp ---------------SSSCHHHHHC--CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS
T ss_pred ---------------HHHHHHHHhC--CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce
Confidence 0001111111 568999999999999999999999999999999764 5799999999999
Q ss_pred EEEEecccccCcccccccEEEEeC--------------------CCCCHHHHHHHhhccccCCC-CceEEEEecC
Q 005741 565 VVVATIAFGMGIDKLNVRRIIHYG--------------------WPQSLEAYYQEAGRAGRDGH-LADCVLYANL 618 (679)
Q Consensus 565 vLVaT~~~~~GiDip~v~~VI~~d--------------------~p~s~~~y~Qr~GRagR~G~-~g~~~~l~~~ 618 (679)
|||||+++++|||+|+ ++||+|| .|.+..+|+||+|||||.|+ .|.|++|+..
T Consensus 237 vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 237 FVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred EEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999 9999999 99999999999999999998 8899888743
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=8.2e-37 Score=338.13 Aligned_cols=380 Identities=14% Similarity=0.114 Sum_probs=248.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhc-
Q 005741 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++++.++.+|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++. .+..++||+||++|+.|.++++..+
T Consensus 100 vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 100 AREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 33445556899 89999999999999998 99999999999999999963 6889999999999999888887663
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHH----HHHHhhcCceEEEeecccccc-cCCC----
Q 005741 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVS-KWGH---- 303 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~----~~~~~~~~~~lvViDEaH~l~-~~g~---- 303 (679)
|+++.++.+|..... . .. ...++|+|+||+++ .+++... .+...++.+.++||||||+++ +.+.
T Consensus 177 ~~lGLsv~~i~gg~~~~~-r-~~-~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDE-R-RV-AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHTTCCEEECCTTCCHHH-H-HH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred hhcCCeEEEEeCCCCHHH-H-HH-hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 899988888776432 2 22 22479999999999 5666521 123456789999999999997 4320
Q ss_pred ------CchHHHHHHHHHHHhhcc-ccccccCCCCCEE-----------------EEEccCCh---hhHHHHHHHcCCCC
Q 005741 304 ------DFRPDYRRLSVLRENFGA-NNLKSLKFDIPLM-----------------ALTATATI---QVREDILKSLHMSK 356 (679)
Q Consensus 304 ------~f~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l-----------------~lSAT~~~---~~~~~i~~~l~~~~ 356 (679)
.-...+..+..+...+.. ..+..-....+++ ++|||.+. .+...+....-+..
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 002234455555544431 0111112456777 88999753 22222222111111
Q ss_pred Cc--------eEEecccCCC-------------------CcEE-----EEEecC-----------CccchhhhHhHHHHH
Q 005741 357 GT--------KFVLTSFFRP-------------------NLRF-----SVKHSK-----------TSSRASYKKDFCQLI 393 (679)
Q Consensus 357 ~~--------~~~~~~~~r~-------------------~~~~-----~v~~~~-----------~~~~~~~~~~~~~~~ 393 (679)
+. .++...+... .+.+ ...... .....+......++.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 11 1111111000 0000 000000 000011112234555
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005741 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
..|...-...+..........
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~----------------------------------------------------------- 434 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQ----------------------------------------------------------- 434 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEEC-----------------------------------------------------------
T ss_pred HHhCCCeEEeCCCCCcccccC-----------------------------------------------------------
Confidence 556555332221111000000
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005741 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
. .........|...+++.+.+.. .+.++||||.|++.++.|++.|...|+.+..+||++.+.++.
T Consensus 435 -------------~-d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~ 500 (922)
T 1nkt_A 435 -------------S-DLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEAT 500 (922)
T ss_dssp -------------C-CEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHH
T ss_pred -------------C-cEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHH
Confidence 0 0000011224445555554432 345899999999999999999999999999999999888888
Q ss_pred HHHHHHhCCCeeEEEEecccccCcccccc---------------------------------------------------
Q 005741 553 RVHTEFHENKLEVVVATIAFGMGIDKLNV--------------------------------------------------- 581 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~v--------------------------------------------------- 581 (679)
.+.+.|+.| .|+|||++++||+||+.+
T Consensus 501 iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 578 (922)
T 1nkt_A 501 IIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAG 578 (922)
T ss_dssp HHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 888888888 699999999999999965
Q ss_pred -cEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 582 -RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 582 -~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
.+||+|+.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 579 GlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 579 GLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp SEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred CcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999987763
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.6e-38 Score=344.84 Aligned_cols=278 Identities=22% Similarity=0.211 Sum_probs=205.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHh-cCCceEEEcCCCCcHH
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNK 251 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~ 251 (679)
.++++|.++++.+..++++++++|||||||++|.+|++..+.++||++|||+|+.|+++.+.+ ++..+....++..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 466777777777778889999999999999999999999888999999999999999998876 4666655555432
Q ss_pred HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCC
Q 005741 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (679)
Q Consensus 252 ~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~ 331 (679)
.....+|+|+||++|+ . ...+.+.++++|||||||++. .+ |...+..+.... +...
T Consensus 294 -----~~~~~~IlV~TPGrLl---~--~~~l~l~~l~~lVlDEAH~l~-~~--~~~~l~~Il~~l-----------~~~~ 349 (666)
T 3o8b_A 294 -----ITTGAPVTYSTYGKFL---A--DGGCSGGAYDIIICDECHSTD-ST--TILGIGTVLDQA-----------ETAG 349 (666)
T ss_dssp -----ECCCCSEEEEEHHHHH---H--TTSCCTTSCSEEEETTTTCCS-HH--HHHHHHHHHHHT-----------TTTT
T ss_pred -----ccCCCCEEEECcHHHH---h--CCCcccCcccEEEEccchhcC-cc--HHHHHHHHHHhh-----------hhcC
Confidence 3456899999999873 2 344556789999999998763 22 566666553332 2233
Q ss_pred C--EEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhcccccccccc
Q 005741 332 P--LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSA 409 (679)
Q Consensus 332 ~--~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (679)
+ ++++|||++... .. ..+++ ..+........
T Consensus 350 ~~llil~SAT~~~~i--------~~-----------~~p~i-~~v~~~~~~~i--------------------------- 382 (666)
T 3o8b_A 350 ARLVVLATATPPGSV--------TV-----------PHPNI-EEVALSNTGEI--------------------------- 382 (666)
T ss_dssp CSEEEEEESSCTTCC--------CC-----------CCTTE-EEEECBSCSSE---------------------------
T ss_pred CceEEEECCCCCccc--------cc-----------CCcce-EEEeecccchh---------------------------
Confidence 4 678899997521 00 01111 01000000000
Q ss_pred ccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccc
Q 005741 410 IPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRS 489 (679)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (679)
.++
T Consensus 383 ------------------------------------------------~~~----------------------------- 385 (666)
T 3o8b_A 383 ------------------------------------------------PFY----------------------------- 385 (666)
T ss_dssp ------------------------------------------------EET-----------------------------
T ss_pred ------------------------------------------------HHH-----------------------------
Confidence 000
Q ss_pred hhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEe
Q 005741 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT 569 (679)
Q Consensus 490 ~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT 569 (679)
.+.. ..+....+++||||++++.++.+++.|.+.++.+..+||+|++++ |+++..+|||||
T Consensus 386 -------~~~~-----~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVAT 446 (666)
T 3o8b_A 386 -------GKAI-----PIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVAT 446 (666)
T ss_dssp -------TEEE-----CGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEEC
T ss_pred -------Hhhh-----hhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEEC
Confidence 0000 001113679999999999999999999999999999999999875 556777999999
Q ss_pred cccccCcccccccEEE----------EeC-----------CCCCHHHHHHHhhccccCCCCceEEEEecCCCCCc
Q 005741 570 IAFGMGIDKLNVRRII----------HYG-----------WPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (679)
Q Consensus 570 ~~~~~GiDip~v~~VI----------~~d-----------~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~ 623 (679)
+++++|||+| +++|| ||| .|.+.++|+||+||||| |++|. ++|+++.+.+.
T Consensus 447 dVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 447 DALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp TTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 9999999997 99998 677 89999999999999999 99999 99998887664
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.5e-38 Score=356.80 Aligned_cols=281 Identities=16% Similarity=0.163 Sum_probs=194.8
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcC
Q 005741 173 SLKNFQK-----EALSAWL------AHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHG 237 (679)
Q Consensus 173 ~~~~~Q~-----~ai~~~l------~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~ 237 (679)
.|+++|+ ++|+.++ +++|+++++|||||||++|++|++. .+.++|||+||++|+.|+.+.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999888 8999999999999999999998874 57899999999999999999999876
Q ss_pred CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHH
Q 005741 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (679)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~ 317 (679)
+. .. .+... .......-+-+.+.+.+.+. +.....+.++++|||||||++.. .+...+..+..+..
T Consensus 295 i~--~~-~~~l~-----~v~tp~~ll~~l~~~~l~~~---l~~~~~l~~l~lvViDEaH~~~~---~~~~~~~~l~~~~~ 360 (673)
T 2wv9_A 295 VR--YL-TPAVQ-----REHSGNEIVDVMCHATLTHR---LMSPLRVPNYNLFVMDEAHFTDP---ASIAARGYIATRVE 360 (673)
T ss_dssp CE--EC-CC--------CCCCSCCCEEEEEHHHHHHH---HHSSSCCCCCSEEEEESTTCCCH---HHHHHHHHHHHHHH
T ss_pred ee--ee-ccccc-----ccCCHHHHHHHHHhhhhHHH---HhcccccccceEEEEeCCcccCc---cHHHHHHHHHHhcc
Confidence 43 11 11000 00001112233333332211 11112468899999999999821 12223333322211
Q ss_pred hhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHh
Q 005741 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 397 (679)
+...|+++||||++..+.. +.. .+.++. .+.... .
T Consensus 361 ----------~~~~~vl~~SAT~~~~i~~-------~~~---------~~~~i~-~v~~~~-~----------------- 395 (673)
T 2wv9_A 361 ----------AGEAAAIFMTATPPGTSDP-------FPD---------TNSPVH-DVSSEI-P----------------- 395 (673)
T ss_dssp ----------TTSCEEEEECSSCTTCCCS-------SCC---------CSSCEE-EEECCC-C-----------------
T ss_pred ----------ccCCcEEEEcCCCChhhhh-------hcc---------cCCceE-EEeeec-C-----------------
Confidence 1268999999999755211 000 011110 000000 0
Q ss_pred hhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccC
Q 005741 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYG 477 (679)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (679)
T Consensus 396 -------------------------------------------------------------------------------- 395 (673)
T 2wv9_A 396 -------------------------------------------------------------------------------- 395 (673)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 005741 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557 (679)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~ 557 (679)
......++..+.+ ..+++||||++++.++.+++.|...++.+..+||+ +|+.+++.
T Consensus 396 ------------------~~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~ 451 (673)
T 2wv9_A 396 ------------------DRAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPK 451 (673)
T ss_dssp ------------------SSCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGG
T ss_pred ------------------HHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHH
Confidence 0000001122222 26799999999999999999999999999999993 79999999
Q ss_pred HhCCCeeEEEEecccccCcccccccEEEE--------------------eCCCCCHHHHHHHhhccccC-CCCceEEEEe
Q 005741 558 FHENKLEVVVATIAFGMGIDKLNVRRIIH--------------------YGWPQSLEAYYQEAGRAGRD-GHLADCVLYA 616 (679)
Q Consensus 558 F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------------------~d~p~s~~~y~Qr~GRagR~-G~~g~~~~l~ 616 (679)
|++|+.+|||||+++++|||+| +++||+ |++|.+..+|+||+||+||. |+.|.|++|+
T Consensus 452 F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 452 CKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp GGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred HHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999999999999999999999 999998 67899999999999999999 7899999997
Q ss_pred c
Q 005741 617 N 617 (679)
Q Consensus 617 ~ 617 (679)
.
T Consensus 531 ~ 531 (673)
T 2wv9_A 531 G 531 (673)
T ss_dssp S
T ss_pred e
Confidence 3
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2e-37 Score=345.76 Aligned_cols=283 Identities=14% Similarity=0.091 Sum_probs=207.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCC
Q 005741 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 246 (679)
...++|+|+.+++.+++|+|+++++|||||||++|++|++. .++++|||+||++|+.|+.+.+....+. ....
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~~v~---~~~~ 245 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIR---YQTP 245 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE---ECCT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCCcee---Eecc
Confidence 36788998888999999999999999999999999999873 5779999999999999999999754322 2211
Q ss_pred CCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccc
Q 005741 247 QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326 (679)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~ 326 (679)
... .....+..+.++|.+.+.+.+. ....+.++++|||||||++ +.+ |...+..+......
T Consensus 246 ~l~-----~~~tp~~~i~~~t~~~l~~~l~---~~~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l~~-------- 306 (618)
T 2whx_A 246 AVK-----SDHTGREIVDLMCHATFTTRLL---SSTRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRVEM-------- 306 (618)
T ss_dssp TSS-----CCCCSSSCEEEEEHHHHHHHHH---HCSSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHHHH--------
T ss_pred cce-----eccCCCceEEEEChHHHHHHHh---ccccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHhcc--------
Confidence 100 0112234677788887664332 2234788999999999998 333 56666655433211
Q ss_pred cCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccc
Q 005741 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKE 406 (679)
Q Consensus 327 ~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (679)
++.|+++||||++..... ... .....+.+.... ..
T Consensus 307 --~~~q~il~SAT~~~~~~~----~~~-------------~~~~~~~v~~~~-~~------------------------- 341 (618)
T 2whx_A 307 --GEAAAIFMTATPPGSTDP----FPQ-------------SNSPIEDIEREI-PE------------------------- 341 (618)
T ss_dssp --TSCEEEEECSSCTTCCCS----SCC-------------CSSCEEEEECCC-CS-------------------------
T ss_pred --cCccEEEEECCCchhhhh----hhc-------------cCCceeeecccC-CH-------------------------
Confidence 278999999999765321 000 001111110000 00
Q ss_pred cccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCC
Q 005741 407 KSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDT 486 (679)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (679)
T Consensus 342 -------------------------------------------------------------------------------- 341 (618)
T 2whx_A 342 -------------------------------------------------------------------------------- 341 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEE
Q 005741 487 DRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566 (679)
Q Consensus 487 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vL 566 (679)
.+...++..+.+. .+++||||++++.++.+++.|.+.++.+..+||+ +|+++++.|++|+.+||
T Consensus 342 ----------~~~~~ll~~l~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VL 405 (618)
T 2whx_A 342 ----------RSWNTGFDWITDY--QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFV 405 (618)
T ss_dssp ----------SCCSSSCHHHHHC--CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEE
T ss_pred ----------HHHHHHHHHHHhC--CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEE
Confidence 0000011122221 5699999999999999999999999999999984 78889999999999999
Q ss_pred EEecccccCcccccccEE--------------------EEeCCCCCHHHHHHHhhccccCCC-CceEEEEec
Q 005741 567 VATIAFGMGIDKLNVRRI--------------------IHYGWPQSLEAYYQEAGRAGRDGH-LADCVLYAN 617 (679)
Q Consensus 567 VaT~~~~~GiDip~v~~V--------------------I~~d~p~s~~~y~Qr~GRagR~G~-~g~~~~l~~ 617 (679)
|||+++++|||+| +++| |+|+.|.+..+|+||+|||||.|. .|.|++|++
T Consensus 406 VaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 406 VTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 9999999999997 8888 788889999999999999999965 899999997
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.8e-38 Score=338.61 Aligned_cols=262 Identities=16% Similarity=0.120 Sum_probs=181.8
Q ss_pred HHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcC
Q 005741 184 AWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRG 259 (679)
Q Consensus 184 ~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
++++|+|+++++|||||||++|++|++. .++++||++||++|+.|+++.+..+++. ... +..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~-~~~----------- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHT-QAF----------- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EES-SCC-----------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eec-ccc-----------
Confidence 3567899999999999999999998874 5679999999999999999999876543 111 110
Q ss_pred CccEEEEChHHHHHHHHHHHHHH--------hhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCC
Q 005741 260 MYSIIYVCPETVIRLIKPLQRLA--------ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~--------~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~ 331 (679)
-.++||+++.+++. .+.+ .+.++++|||||||++ +.+ +...+..+..+.. +.+.
T Consensus 70 ---~~v~Tp~~l~~~l~--~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~----------~~~~ 131 (440)
T 1yks_A 70 ---SAHGSGREVIDAMC--HATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR----------ANES 131 (440)
T ss_dssp ---CCCCCSSCCEEEEE--HHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH----------TTSC
T ss_pred ---eeccCCccceeeec--ccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc----------cCCc
Confidence 03677776654433 2222 2678999999999998 222 3333333332221 1368
Q ss_pred CEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhcccccccccccc
Q 005741 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIP 411 (679)
Q Consensus 332 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (679)
|+++||||++..... +. ..+...........
T Consensus 132 ~~l~~SAT~~~~~~~-------~~-----------~~~~~~~~~~~~~~------------------------------- 162 (440)
T 1yks_A 132 ATILMTATPPGTSDE-------FP-----------HSNGEIEDVQTDIP------------------------------- 162 (440)
T ss_dssp EEEEECSSCTTCCCS-------SC-----------CCSSCEEEEECCCC-------------------------------
T ss_pred eEEEEeCCCCchhhh-------hh-----------hcCCCeeEeeeccC-------------------------------
Confidence 999999999765321 00 00000000000000
Q ss_pred ccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchh
Q 005741 412 QDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFE 491 (679)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (679)
T Consensus 163 -------------------------------------------------------------------------------- 162 (440)
T 1yks_A 163 -------------------------------------------------------------------------------- 162 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc
Q 005741 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (679)
Q Consensus 492 ~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~ 571 (679)
......++..+.+. .+++||||++++.++.+++.|...++.+..+|| ++|+.+++.|++|+.+|||||++
T Consensus 163 ----~~~~~~~~~~l~~~--~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v 232 (440)
T 1yks_A 163 ----SEPWNTGHDWILAD--KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDI 232 (440)
T ss_dssp ----SSCCSSSCHHHHHC--CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSS
T ss_pred ----hHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECCh
Confidence 00000011112221 579999999999999999999999999999999 46889999999999999999999
Q ss_pred cccCcccccccEEEE-------------------eCCCCCHHHHHHHhhccccC-CCCceEEEEec
Q 005741 572 FGMGIDKLNVRRIIH-------------------YGWPQSLEAYYQEAGRAGRD-GHLADCVLYAN 617 (679)
Q Consensus 572 ~~~GiDip~v~~VI~-------------------~d~p~s~~~y~Qr~GRagR~-G~~g~~~~l~~ 617 (679)
+++|||+| +++||+ |+.|.+..+|+||+||+||. |+.|.|++|+.
T Consensus 233 ~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999 999996 89999999999999999997 68999999973
No 48
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-36 Score=357.81 Aligned_cols=395 Identities=13% Similarity=0.124 Sum_probs=235.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc---c--CCeEEEEcCchHHHHHHHHHHH-hcCCceEEEc
Q 005741 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLS-KHGVTACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~---~--~~~vLvl~Pt~~L~~q~~~~l~-~~~~~~~~~~ 244 (679)
+|+|||.+++.+++.. .++|++++||+|||++++..+.. . .+++|||||+ +|+.||..++. .+++.+..+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 7999999999998864 48899999999999988766642 3 3489999999 99999999995 4677766654
Q ss_pred CCCCcHHHHH-HHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005741 245 SGQPDNKVEQ-KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
++........ .......+|+|+|++.+...... ...+...+|++|||||||++...+......+..+..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~----- 305 (968)
T 3dmq_A 232 DERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH----- 305 (968)
T ss_dssp HHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT-----
T ss_pred cchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc-----
Confidence 3221110000 01123469999999988642211 1234466899999999999976554333445555444221
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHH---HHHHhhhc
Q 005741 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL---IDIYTKKK 400 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~ 400 (679)
..++++|||||.++...+++..+.+..+. .. .....+....... ........
T Consensus 306 ------~~~~L~LTATPi~n~~~el~sll~~L~p~-----------~~--------~~~~~f~~~~~~~~~i~~~~~~l~ 360 (968)
T 3dmq_A 306 ------VPGVLLLTATPEQLGMESHFARLRLLDPN-----------RF--------HDFAQFVEEQKNYCPVADAVAMLL 360 (968)
T ss_dssp ------CSSEEESCSSCSSSCSSCTHHHHHHHCTT-----------TC--------SSTHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------CCcEEEEEcCCccCCHHHHHHHHHhcCcc-----------cc--------CCHHHHHHHHHhHHHHHHHHHHHh
Confidence 45699999999877666666655432111 00 0001122221111 11111100
Q ss_pred c---ccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC------------c
Q 005741 401 K---TGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS------------V 465 (679)
Q Consensus 401 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~ 465 (679)
. ........+...+.... ...+......... ............++.... +
T Consensus 361 ~~~~~~~~~~~~L~~~l~~~~----~~~l~~~~~~~~~-----------~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 361 AGNKLSNDELNMLGEMIGEQD----IEPLLQAANSDSE-----------DAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp TSCCCCGGGTTSSTTTTCTTC----SSTTGGGTCCCSS-----------CSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred ccCCCCHHHHHHHHHHhcchh----hHHHHhcccchhh-----------hhHHHHHHHHHHHHHhhCcchhhhhhhhhhh
Confidence 0 00000001110000000 0000000000000 000000000000000000 0
Q ss_pred ccc----------------c-----------------cccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCC
Q 005741 466 DDW----------------D-----------------VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512 (679)
Q Consensus 466 ~~~----------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 512 (679)
..+ . .....++...... ..............|...+.+.+.+ ...
T Consensus 426 ~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~-~l~~~~~~~~~~~~K~~~L~~ll~~-~~~ 503 (968)
T 3dmq_A 426 KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQ-EFEGDNATWWNFDPRVEWLMGYLTS-HRS 503 (968)
T ss_dssp CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTT-TTTSSSCCTTTTSHHHHHHHHHHHH-TSS
T ss_pred cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHH-HhhhhhhcccCccHHHHHHHHHHHh-CCC
Confidence 000 0 0000000000000 0000000112233455566666655 457
Q ss_pred CcEEEEeCchhHHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHhCCC--eeEEEEecccccCcccccccEEEEeCC
Q 005741 513 GLTIIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRIIHYGW 589 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~R~~v~~~F~~g~--~~vLVaT~~~~~GiDip~v~~VI~~d~ 589 (679)
.++||||+++..++.+++.|.. .|+.+..+||+|++.+|+.+++.|++|+ ++|||||+++++|||+|++++||+||+
T Consensus 504 ~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~ 583 (968)
T 3dmq_A 504 QKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL 583 (968)
T ss_dssp SCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC
Confidence 7999999999999999999995 5999999999999999999999999998 999999999999999999999999999
Q ss_pred CCCHHHHHHHhhccccCCCCceEEEEe
Q 005741 590 PQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 590 p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
|+++..|+||+||+||.|+.|.+++++
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred CCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999999999999999999776664
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.5e-36 Score=338.95 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=198.8
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEeecCCcchhhhhhhhhc------------cCCeEEEEcCchHHHHHHH-HHHH
Q 005741 173 SLKNFQKEALSAWLA----H-HDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLISLMHDQC-SKLS 234 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~----g-~d~iv~a~TGsGKTl~~~lp~l~------------~~~~vLvl~Pt~~L~~q~~-~~l~ 234 (679)
.|++||.+|++++++ + +++++++|||+|||++++..+.. .++++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 4 56899999999999987655431 4689999999999999999 8899
Q ss_pred hcCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHH--HHHHHhhcCceEEEeecccccccCCCCchHHHHHH
Q 005741 235 KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~--~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
.++.....+.++. .....+|+|+||+++...... ....+....+++|||||||++...+ ...+..+
T Consensus 258 ~~~~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~---~~~~~~i 325 (590)
T 3h1t_A 258 PFGDARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD---NSNWREI 325 (590)
T ss_dssp TTCSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHH
T ss_pred hcchhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc---hHHHHHH
Confidence 8887766655332 234579999999998765431 0112334679999999999997532 1222222
Q ss_pred HHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceE----EecccCCCCcEEEEEecCCccchhhhHh
Q 005741 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF----VLTSFFRPNLRFSVKHSKTSSRASYKKD 388 (679)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~----~~~~~~r~~~~~~v~~~~~~~~~~~~~~ 388 (679)
+..+. ..++++|||||...........++....... +...+..+.....+....... .+...
T Consensus 326 ---l~~~~---------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~--~~~~~ 391 (590)
T 3h1t_A 326 ---LEYFE---------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAA--GWRPS 391 (590)
T ss_dssp ---HHHST---------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC--------
T ss_pred ---HHhCC---------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecc--ccccc
Confidence 23332 4679999999988776666666653110000 001112221111111110000 00000
Q ss_pred HHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccc
Q 005741 389 FCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDW 468 (679)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (679)
....+.+. .......+. ...
T Consensus 392 -~~~~~~~~------------------------------------~~~~~~~~~---------~~~-------------- 411 (590)
T 3h1t_A 392 -KGDVDRFG------------------------------------REIPDGEYQ---------TKD-------------- 411 (590)
T ss_dssp ---------------------------------------------------------------CCS--------------
T ss_pred -cccccccc------------------------------------cccccccCC---------HHH--------------
Confidence 00000000 000000000 000
Q ss_pred ccccccccCCCCCCCCCCccchhhccccCchH----HHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCc------
Q 005741 469 DVACGEFYGHSPHRDRDTDRSFERTDLLNKPA----ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK------ 538 (679)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~------ 538 (679)
.........+.. .+.+.+......+++||||+++++++.+++.|.+.+..
T Consensus 412 --------------------~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~ 471 (590)
T 3h1t_A 412 --------------------FERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHP 471 (590)
T ss_dssp --------------------HHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCT
T ss_pred --------------------hhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCC
Confidence 000000001111 12223333334579999999999999999999875442
Q ss_pred --EEEecCCCCHHHHHHHHHHHhCCCee---EEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCC--Cce
Q 005741 539 --AAAYNASLPKSQLRRVHTEFHENKLE---VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH--LAD 611 (679)
Q Consensus 539 --~~~~hg~~~~~~R~~v~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~--~g~ 611 (679)
+..+||++++ +|+.++++|++|+.+ |||||+++++|||+|+|++||+++.|+|+..|+||+||+||.|. .+.
T Consensus 472 ~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~ 550 (590)
T 3h1t_A 472 DYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKL 550 (590)
T ss_dssp TSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBS
T ss_pred CeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCC
Confidence 7789999864 799999999998766 88999999999999999999999999999999999999999875 444
Q ss_pred EEEEecC
Q 005741 612 CVLYANL 618 (679)
Q Consensus 612 ~~~l~~~ 618 (679)
.+++++.
T Consensus 551 ~~~I~D~ 557 (590)
T 3h1t_A 551 WFNIIDY 557 (590)
T ss_dssp CEEEEEC
T ss_pred EEEEEec
Confidence 4555553
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.2e-35 Score=317.76 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=184.6
Q ss_pred cCCCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCcc
Q 005741 187 AHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (679)
+|+++++++|||||||++|++|++ ..++++||++||++|+.|+.+.+.. +.+....++... .......
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~~------~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQS------ERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC---------------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCccc------cCCCCce
Confidence 478999999999999999988887 4678999999999999999998874 444433322111 1222345
Q ss_pred EEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005741 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 263 Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
+.++|.+.+.+.+. ....+.++++|||||||++.. + +......+..+.. ++..++++||||++.
T Consensus 73 ~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~~-~--~~~~~~~l~~~~~----------~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 73 VDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLDP-A--SVAARGYIETRVS----------MGDAGAIFMTATPPG 136 (431)
T ss_dssp EEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCSH-H--HHHHHHHHHHHHH----------TTSCEEEEEESSCTT
T ss_pred EEEEchHHHHHHHh---cCccccCCCEEEEeCCccCCc-c--HHHHHHHHHHHhh----------CCCCcEEEEeCCCCc
Confidence 77788887754322 233478899999999999732 1 2333333333221 237899999999975
Q ss_pred hhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCC
Q 005741 343 QVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSS 422 (679)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (679)
.... +.. .++++.. +.... .
T Consensus 137 ~~~~-------~~~---------~~~~i~~-~~~~~-~------------------------------------------ 156 (431)
T 2v6i_A 137 TTEA-------FPP---------SNSPIID-EETRI-P------------------------------------------ 156 (431)
T ss_dssp CCCS-------SCC---------CSSCCEE-EECCC-C------------------------------------------
T ss_pred chhh-------hcC---------CCCceee-ccccC-C------------------------------------------
Confidence 3210 000 0111110 00000 0
Q ss_pred CCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHH
Q 005741 423 SSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAER 502 (679)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 502 (679)
......+
T Consensus 157 -------------------------------------------------------------------------~~~~~~~ 163 (431)
T 2v6i_A 157 -------------------------------------------------------------------------DKAWNSG 163 (431)
T ss_dssp -------------------------------------------------------------------------SSCCSSC
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0000011
Q ss_pred hhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCccccccc
Q 005741 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVR 582 (679)
Q Consensus 503 l~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~ 582 (679)
++.+.+. .+++||||++++.++.+++.|.+.++.+..+||+ +|+.+++.|++|+.+|||||+++++|||+| +.
T Consensus 164 ~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~ 236 (431)
T 2v6i_A 164 YEWITEF--DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-AD 236 (431)
T ss_dssp CHHHHSC--SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CS
T ss_pred HHHHHcC--CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-Cc
Confidence 2222222 5689999999999999999999999999999997 588899999999999999999999999999 54
Q ss_pred E-----------------EEEeCCCCCHHHHHHHhhccccCCCC-ceEEEEe
Q 005741 583 R-----------------IIHYGWPQSLEAYYQEAGRAGRDGHL-ADCVLYA 616 (679)
Q Consensus 583 ~-----------------VI~~d~p~s~~~y~Qr~GRagR~G~~-g~~~~l~ 616 (679)
+ ||+++.|.+..+|+||+||+||.|.. |.+++|.
T Consensus 237 ~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 237 RVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 4 67889999999999999999999864 5555554
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.9e-36 Score=326.35 Aligned_cols=272 Identities=16% Similarity=0.132 Sum_probs=186.8
Q ss_pred HHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcC
Q 005741 184 AWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRG 259 (679)
Q Consensus 184 ~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
.+..++++++++|||||||++|++|++. .++++||++||++|+.|+.+.+..+. +......... ....
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~--v~~~~~~~~~------~~t~ 88 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLP--VRYQTSAVQR------EHQG 88 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTSC--EEECC--------------C
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCce--EeEEeccccc------CCCC
Confidence 3556789999999999999999999974 67899999999999999999998443 2221111110 0123
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEcc
Q 005741 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT 339 (679)
...+.++|.+.+...+. ....+.++++|||||||++... +......+.... ..++.|+++||||
T Consensus 89 ~~~i~~~~~~~l~~~l~---~~~~l~~~~~iViDEaH~~~~~---~~~~~~~~~~~~----------~~~~~~~il~SAT 152 (459)
T 2z83_A 89 NEIVDVMCHATLTHRLM---SPNRVPNYNLFVMDEAHFTDPA---SIAARGYIATKV----------ELGEAAAIFMTAT 152 (459)
T ss_dssp CCSEEEEEHHHHHHHHH---SCC-CCCCSEEEESSTTCCSHH---HHHHHHHHHHHH----------HTTSCEEEEECSS
T ss_pred CcEEEEEchHHHHHHhh---ccccccCCcEEEEECCccCCch---hhHHHHHHHHHh----------ccCCccEEEEEcC
Confidence 34577888887654322 1234678999999999985210 011111111111 0137899999999
Q ss_pred CChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccC
Q 005741 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSD 419 (679)
Q Consensus 340 ~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (679)
++..... +.. ...++.. +.... ..
T Consensus 153 ~~~~~~~-------~~~---------~~~pi~~-~~~~~-~~-------------------------------------- 176 (459)
T 2z83_A 153 PPGTTDP-------FPD---------SNAPIHD-LQDEI-PD-------------------------------------- 176 (459)
T ss_dssp CTTCCCS-------SCC---------CSSCEEE-EECCC-CS--------------------------------------
T ss_pred CCcchhh-------hcc---------CCCCeEE-ecccC-Cc--------------------------------------
Confidence 9754211 000 0111110 00000 00
Q ss_pred cCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCch
Q 005741 420 TSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKP 499 (679)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (679)
...
T Consensus 177 -----------------------------------------------------------------------------~~~ 179 (459)
T 2z83_A 177 -----------------------------------------------------------------------------RAW 179 (459)
T ss_dssp -----------------------------------------------------------------------------SCC
T ss_pred -----------------------------------------------------------------------------chh
Confidence 000
Q ss_pred HHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccc
Q 005741 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL 579 (679)
Q Consensus 500 ~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip 579 (679)
..++..+.+. .+++||||++++.++.+++.|...++.+..+||+ +|+.+++.|++|+.+|||||+++++|||+|
T Consensus 180 ~~~~~~l~~~--~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip 253 (459)
T 2z83_A 180 SSGYEWITEY--AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG 253 (459)
T ss_dssp SSCCHHHHHC--CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCS
T ss_pred HHHHHHHHhc--CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecC
Confidence 0001111121 5799999999999999999999999999999995 788999999999999999999999999999
Q ss_pred cccEEEE--------------------eCCCCCHHHHHHHhhccccCCC-CceEEEEecCC
Q 005741 580 NVRRIIH--------------------YGWPQSLEAYYQEAGRAGRDGH-LADCVLYANLS 619 (679)
Q Consensus 580 ~v~~VI~--------------------~d~p~s~~~y~Qr~GRagR~G~-~g~~~~l~~~~ 619 (679)
+ ++||+ |+.|.|..+|+||+|||||.|+ .|.+++|+...
T Consensus 254 ~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 254 A-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp C-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred C-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9 99999 7799999999999999999997 89999999875
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-35 Score=339.41 Aligned_cols=323 Identities=15% Similarity=0.149 Sum_probs=222.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhhhhhhhc------c--CCeEEEEcCchHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL------T--GKVVVVISPLISLM 226 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~~lp~l~------~--~~~vLvl~Pt~~L~ 226 (679)
.+++.+.+.+.+. + ..|++.|+++|+.++. ++++++++|||+|||+ ++|++. . +++++|++|+++|+
T Consensus 78 ~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La 153 (773)
T 2xau_A 78 EFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAA 153 (773)
T ss_dssp BCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHH
T ss_pred CCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHH
Confidence 5667788888765 4 5799999999998875 5679999999999998 444432 2 66799999999999
Q ss_pred HHHHHHHHhc-CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccc-cccCCCC
Q 005741 227 HDQCSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC-VSKWGHD 304 (679)
Q Consensus 227 ~q~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~-l~~~g~~ 304 (679)
.|+.+.+... +..+....+..... ........+|+|+||+++.+.+. . ...+.++++|||||+|. .++
T Consensus 154 ~q~~~~l~~~~~~~v~~~vG~~i~~---~~~~~~~~~I~v~T~G~l~r~l~--~-~~~l~~~~~lIlDEah~R~ld---- 223 (773)
T 2xau_A 154 MSVAQRVAEEMDVKLGEEVGYSIRF---ENKTSNKTILKYMTDGMLLREAM--E-DHDLSRYSCIILDEAHERTLA---- 223 (773)
T ss_dssp HHHHHHHHHHTTCCBTTTEEEEETT---EEECCTTCSEEEEEHHHHHHHHH--H-STTCTTEEEEEECSGGGCCHH----
T ss_pred HHHHHHHHHHhCCchhheecceecc---ccccCCCCCEEEECHHHHHHHHh--h-CccccCCCEEEecCccccccc----
Confidence 9999887653 33221111100000 00112457899999999987554 2 24578899999999995 432
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
....+..+..+.... ++.++++||||++.. .+..+++- ..++.......++. +........ .
T Consensus 224 ~d~~~~~l~~l~~~~---------~~~~iIl~SAT~~~~---~l~~~~~~---~~vi~v~gr~~pv~--~~~~~~~~~-~ 285 (773)
T 2xau_A 224 TDILMGLLKQVVKRR---------PDLKIIIMSATLDAE---KFQRYFND---APLLAVPGRTYPVE--LYYTPEFQR-D 285 (773)
T ss_dssp HHHHHHHHHHHHHHC---------TTCEEEEEESCSCCH---HHHHHTTS---CCEEECCCCCCCEE--EECCSSCCS-C
T ss_pred hHHHHHHHHHHHHhC---------CCceEEEEeccccHH---HHHHHhcC---CCcccccCcccceE--EEEecCCch-h
Confidence 111122233333222 368999999999643 45555542 11111111111111 111000000 0
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005741 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
+..
T Consensus 286 ~~~----------------------------------------------------------------------------- 288 (773)
T 2xau_A 286 YLD----------------------------------------------------------------------------- 288 (773)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----------
Q 005741 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---------- 534 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------- 534 (679)
.....+++.+. ....+++||||+++++++.+++.|.+
T Consensus 289 --------------------------------~~l~~l~~~~~-~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~ 335 (773)
T 2xau_A 289 --------------------------------SAIRTVLQIHA-TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEG 335 (773)
T ss_dssp --------------------------------HHHHHHHHHHH-HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------------HHHHHHHHHHH-hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhccccc
Confidence 00011111111 12367999999999999999999985
Q ss_pred -CCCcEEEecCCCCHHHHHHHHHHHh-----CCCeeEEEEecccccCcccccccEEEEeCC------------------C
Q 005741 535 -FGVKAAAYNASLPKSQLRRVHTEFH-----ENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------P 590 (679)
Q Consensus 535 -~~~~~~~~hg~~~~~~R~~v~~~F~-----~g~~~vLVaT~~~~~GiDip~v~~VI~~d~------------------p 590 (679)
.++.+..+||+|++++|..+++.|+ +|..+|||||+++++|||+|+|++||++|+ |
T Consensus 336 ~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p 415 (773)
T 2xau_A 336 CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSP 415 (773)
T ss_dssp CCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCcccccccc
Confidence 5788999999999999999999999 999999999999999999999999999888 8
Q ss_pred CCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 591 QSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 591 ~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
.|..+|+||+|||||. ++|.|+.|++..+.
T Consensus 416 ~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 416 ISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 8999999999999999 89999999986654
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.3e-34 Score=318.02 Aligned_cols=353 Identities=15% Similarity=0.142 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHhcC--CceE
Q 005741 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKHG--VTAC 241 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~~--~~~~ 241 (679)
.|+|||.++++++. .++++|++++||+|||++++..+.. ..+++||||| .+|+.||.+++.++. ..+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 79999999998874 4789999999999999987654432 3479999999 579999999999973 4555
Q ss_pred EEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcc
Q 005741 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321 (679)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~ 321 (679)
.+.++... .....++|+|+||+++.+... +....|++||+||||++.+.+. ..+..+ ..+.
T Consensus 116 ~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~---~~~~~l----~~l~- 176 (500)
T 1z63_A 116 VFHEDRSK------IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQT---KIFKAV----KELK- 176 (500)
T ss_dssp ECSSSTTS------CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTS---HHHHHH----HTSC-
T ss_pred EEecCchh------ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhH---HHHHHH----Hhhc-
Confidence 54444321 122357999999998875432 3456799999999999976431 122222 1111
Q ss_pred ccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCc---------------------------------eEEeccc---
Q 005741 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGT---------------------------------KFVLTSF--- 365 (679)
Q Consensus 322 ~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~---------------------------------~~~~~~~--- 365 (679)
..++++|||||..+...+++..+.+..+. .++....
T Consensus 177 --------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 177 --------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp --------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred --------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 35689999999988877776655432110 0111100
Q ss_pred ----CCCCcEEEEEe-cCCccchhhhHhHHHHHHHHhhhcccccc--ccccccccCCCccCcCCCCcccccccCCCCCCC
Q 005741 366 ----FRPNLRFSVKH-SKTSSRASYKKDFCQLIDIYTKKKKTGEK--EKSAIPQDLDDQSDTSSSSSMSEESRISPNIGD 438 (679)
Q Consensus 366 ----~r~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (679)
.-|+....+.. ...... ......+............. ....+...+...........+
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l------------ 313 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQ---AAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPAL------------ 313 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHH---HHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHH------------
T ss_pred chhhcCCCCeEEEEEcCCCHHH---HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHH------------
Confidence 11222111111 111110 00111111111000000000 000000000000000000000
Q ss_pred CCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEE
Q 005741 439 GYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTII 517 (679)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IV 517 (679)
+... ........|...+.+.+.+.. .+.++||
T Consensus 314 ---------------------~~~~--------------------------~~~~~~s~K~~~l~~~l~~~~~~~~k~lv 346 (500)
T 1z63_A 314 ---------------------LKGG--------------------------EQSVRRSGKMIRTMEIIEEALDEGDKIAI 346 (500)
T ss_dssp ---------------------HHCS--------------------------CCCSTTCHHHHHHHHHHHHHHTTTCCEEE
T ss_pred ---------------------hcCc--------------------------cchhhcchhHHHHHHHHHHHHccCCcEEE
Confidence 0000 000011234445555554433 3569999
Q ss_pred EeCchhHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhCC-Cee-EEEEecccccCcccccccEEEEeCCCCCHH
Q 005741 518 YVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHEN-KLE-VVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594 (679)
Q Consensus 518 F~~t~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~R~~v~~~F~~g-~~~-vLVaT~~~~~GiDip~v~~VI~~d~p~s~~ 594 (679)
||+++..++.+++.|... |+.+..+||++++++|++++++|++| ..+ +|++|+++++|+|++.+++||+||+|||+.
T Consensus 347 F~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~ 426 (500)
T 1z63_A 347 FTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA 426 (500)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC-
T ss_pred EEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcc
Confidence 999999999999999885 99999999999999999999999988 555 899999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCceEEEE
Q 005741 595 AYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 595 ~y~Qr~GRagR~G~~g~~~~l 615 (679)
.|+|++||++|.|+.+.+.++
T Consensus 427 ~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 427 VEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp --CHHHHTTTTTTTTSCEEEE
T ss_pred hHHHHHHHHHHcCCCCeeEEE
Confidence 999999999999998876543
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=8e-34 Score=317.37 Aligned_cols=276 Identities=20% Similarity=0.213 Sum_probs=199.4
Q ss_pred HHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCcc
Q 005741 183 SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (679)
Q Consensus 183 ~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (679)
...+++++++++||||||||+.+ +..+...+..+|++||++|+.|+++.+.+.++.+..+.++..... .......+
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~a-l~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv---~TpGr~~~ 225 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHA-IQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTV---QPNGKQAS 225 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHH-HHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECC---STTCCCCS
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH-HHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEe---cCCCcccc
Confidence 34567899999999999999943 344444566799999999999999999999999888877654310 00011367
Q ss_pred EEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005741 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 263 Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
++++|++.+. ....+++|||||||++.+.+ |...+..+... .. ....+++++|||.
T Consensus 226 il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~--~g~~~~~~l~~---l~-------~~~i~il~~SAT~-- 281 (677)
T 3rc3_A 226 HVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPA--RGWAWTRALLG---LC-------AEEVHLCGEPAAI-- 281 (677)
T ss_dssp EEEEEGGGCC----------SSSCEEEEEECSGGGGGCTT--THHHHHHHHHH---CC-------EEEEEEEECGGGH--
T ss_pred eeEecHhHhh----------hcccCCEEEEecceecCCcc--chHHHHHHHHc---cC-------ccceEEEeccchH--
Confidence 8999987542 13568999999999998755 66666544211 11 1367889999994
Q ss_pred hhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCC
Q 005741 343 QVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSS 422 (679)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (679)
.....+....+.. . ....+.+..- ....
T Consensus 282 ~~i~~l~~~~~~~--~--~v~~~~r~~~-l~~~----------------------------------------------- 309 (677)
T 3rc3_A 282 DLVMELMYTTGEE--V--EVRDYKRLTP-ISVL----------------------------------------------- 309 (677)
T ss_dssp HHHHHHHHHHTCC--E--EEEECCCSSC-EEEC-----------------------------------------------
T ss_pred HHHHHHHHhcCCc--e--EEEEeeecch-HHHH-----------------------------------------------
Confidence 4444444443211 0 0011100000 0000
Q ss_pred CCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHH
Q 005741 423 SSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAER 502 (679)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 502 (679)
.. .
T Consensus 310 --------------------------------------------------------------------------~~---~ 312 (677)
T 3rc3_A 310 --------------------------------------------------------------------------DH---A 312 (677)
T ss_dssp --------------------------------------------------------------------------SS---C
T ss_pred --------------------------------------------------------------------------HH---H
Confidence 00 0
Q ss_pred hhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhC--CCeeEEEEecccccCccccc
Q 005741 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE--NKLEVVVATIAFGMGIDKLN 580 (679)
Q Consensus 503 l~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~--g~~~vLVaT~~~~~GiDip~ 580 (679)
+..+... ....||||++++.++.+++.|.+.++.+..+||+|++++|+.+++.|++ |+.+|||||+++++|||+ +
T Consensus 313 l~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~ 389 (677)
T 3rc3_A 313 LESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-S 389 (677)
T ss_dssp CCSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-C
T ss_pred HHHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-C
Confidence 0001111 3346899999999999999999999999999999999999999999999 899999999999999999 8
Q ss_pred ccEEEEeCC--------------CCCHHHHHHHhhccccCCCC---ceEEEEecC
Q 005741 581 VRRIIHYGW--------------PQSLEAYYQEAGRAGRDGHL---ADCVLYANL 618 (679)
Q Consensus 581 v~~VI~~d~--------------p~s~~~y~Qr~GRagR~G~~---g~~~~l~~~ 618 (679)
+++||++|+ |.+..+|+||+|||||.|+. |.|++++..
T Consensus 390 v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 390 IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp BSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999999999 78999999999999999964 777776643
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=332.67 Aligned_cols=398 Identities=14% Similarity=0.162 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEeecCCcchhhhhhhhh------ccCCeEEEEcCchHHHHHHHHHHHhcC--Cce
Q 005741 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPLISLMHDQCSKLSKHG--VTA 240 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl~~~lp~l------~~~~~vLvl~Pt~~L~~q~~~~l~~~~--~~~ 240 (679)
+|+|||.+++.+++ .++++|++++||+|||+.++..+. ...+.+||||| .+|+.||.+++.++. +.+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v 314 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNC 314 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCE
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceE
Confidence 79999999999877 688999999999999987765543 24778999999 689999999999974 444
Q ss_pred EEEcCCCCcHHHHHH-----------HHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHH
Q 005741 241 CFLGSGQPDNKVEQK-----------ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDY 309 (679)
Q Consensus 241 ~~~~~~~~~~~~~~~-----------~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~ 309 (679)
....++......... .....++|+|+|++++..... .+....|++|||||||++.+.+. ..+
T Consensus 315 ~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~----~l~~~~w~~vIvDEaH~lkn~~s---~~~ 387 (800)
T 3mwy_W 315 ICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA----ELGSIKWQFMAVDEAHRLKNAES---SLY 387 (800)
T ss_dssp EECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH----HHHTSEEEEEEETTGGGGCCSSS---HHH
T ss_pred EEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH----HHhcCCcceeehhhhhhhcCchh---HHH
Confidence 444443332221111 122457899999999876433 23345799999999999976432 222
Q ss_pred HHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhH
Q 005741 310 RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389 (679)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~ 389 (679)
..+ ..+. ...+++|||||.++...+++..+++..+..+..... +.... ...........+
T Consensus 388 ~~l----~~l~---------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~------~~~~~-~~~~~~~~~~~L 447 (800)
T 3mwy_W 388 ESL----NSFK---------VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQE------IDFEN-QDEEQEEYIHDL 447 (800)
T ss_dssp HHH----TTSE---------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------------C-CTTHHHHHHHHH
T ss_pred HHH----HHhh---------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhh------hcccc-cchhHHHHHHHH
Confidence 222 1111 345899999999999898888876543221111000 00000 000001111122
Q ss_pred HHHHHHHhhhccc-------cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005741 390 CQLIDIYTKKKKT-------GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 390 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
..++..+..++.. ..+....+...+...........+....... ..+.......+ ...+
T Consensus 448 ~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l-----------~~~~~~~~~~~-l~~l-- 513 (800)
T 3mwy_W 448 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL-----------TAGAKGGHFSL-LNIM-- 513 (800)
T ss_dssp HHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------------CTH-HHHH--
T ss_pred HHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH-----------hhccccchhhH-HHHH--
Confidence 2222111111111 0111111111111000000000000000000 00000000000 0000
Q ss_pred CCccccccccccccCCCC-----------CCCCCCccchhhccccCchHHHhhhccCCCC-CCcEEEEeCchhHHHHHHH
Q 005741 463 DSVDDWDVACGEFYGHSP-----------HRDRDTDRSFERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAK 530 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~IVF~~t~~~~~~l~~ 530 (679)
......|...+.... .................|...+.++|..... +.++||||+.+..++.|++
T Consensus 514 ---~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 514 ---NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp ---HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHH
T ss_pred ---HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHH
Confidence 000000110000000 0000000001112234455555566555433 4599999999999999999
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCe---eEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCC
Q 005741 531 YLCGFGVKAAAYNASLPKSQLRRVHTEFHENKL---EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (679)
Q Consensus 531 ~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~---~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G 607 (679)
+|...|+.+..+||+++.++|+.+++.|+++.. .+|++|.++++|||++.+++||+||+|||+..++|++||++|.|
T Consensus 591 ~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 591 YLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp HHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred HHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcC
Confidence 999999999999999999999999999998644 59999999999999999999999999999999999999999999
Q ss_pred CCceEEEE
Q 005741 608 HLADCVLY 615 (679)
Q Consensus 608 ~~g~~~~l 615 (679)
+...|.++
T Consensus 671 Q~k~V~Vy 678 (800)
T 3mwy_W 671 QKNHVMVY 678 (800)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEE
Confidence 98766553
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-32 Score=306.78 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=98.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCe---eEEEEecccccCcccccccEEEEeC
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKL---EVVVATIAFGMGIDKLNVRRIIHYG 588 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~---~vLVaT~~~~~GiDip~v~~VI~~d 588 (679)
..++|||++++..++.+++.|...|+.+..+||+++.++|+.++++|++|.. .+|++|+++++|||++.+++||+||
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 6799999999999999999999999999999999999999999999999865 4899999999999999999999999
Q ss_pred CCCCHHHHHHHhhccccCCCCceEEEE
Q 005741 589 WPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 589 ~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
+|||+..|.|++||++|.|+...|.++
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred CCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 999999999999999999998766554
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=1.2e-28 Score=266.95 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=105.1
Q ss_pred chHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005741 498 KPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
|...+++.+.+.. ...++||||+|++.++.+++.|.+.|+.+..+||+..+.++..+...|+.| .|+|||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 4455555555432 356999999999999999999999999999999997666666666777776 6999999999999
Q ss_pred ccc--------cccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 577 DKL--------NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 577 Dip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||+ ...+||+|+.|.|...|+||+|||||.|.+|.+++|++..|
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 998 55699999999999999999999999999999999999877
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=9.4e-30 Score=296.05 Aligned_cols=338 Identities=12% Similarity=0.108 Sum_probs=209.1
Q ss_pred HHHHHHHHHhcC------CCCCCHHHHHHHHHHHc--------------CCCEEEEeecCCcchhhhhhhhhc------c
Q 005741 159 VKVNSLLKKHFG------HSSLKNFQKEALSAWLA--------------HHDCLVLAATGSGKSLCFQIPALL------T 212 (679)
Q Consensus 159 ~~~~~~l~~~~g------~~~~~~~Q~~ai~~~l~--------------g~d~iv~a~TGsGKTl~~~lp~l~------~ 212 (679)
+.+...+....- ...|||||.+|++.+++ +++++++++||||||++++ +++. .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~-~l~~ll~~~~~ 329 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF-KAARLATELDF 329 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH-HHHHHHTTCTT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH-HHHHHHHhcCC
Confidence 445556654321 12599999999999875 3689999999999999873 3321 1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEe
Q 005741 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAI 292 (679)
Q Consensus 213 ~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvVi 292 (679)
..++|||+|+++|+.|+.+.+.+++... +.++...............+|+|+||+++..++........+..+.+||+
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIi 407 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIF 407 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEE
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEE
Confidence 3699999999999999999999986432 22333333322233245689999999999876652111123557899999
Q ss_pred ecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhH----HHHHHHcCCCCCceEEe------
Q 005741 293 DEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR----EDILKSLHMSKGTKFVL------ 362 (679)
Q Consensus 293 DEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~----~~i~~~l~~~~~~~~~~------ 362 (679)
||||++.. ...+..| ...++ +.++++|||||..... ......++- .....
T Consensus 408 DEAHrs~~-----~~~~~~I---~~~~p---------~a~~lgfTATP~~~~~~~~~~~t~~~FG~---~i~~Y~l~~AI 467 (1038)
T 2w00_A 408 DECHRSQF-----GEAQKNL---KKKFK---------RYYQFGFTGTPIFPENALGSETTASVFGR---ELHSYVITDAI 467 (1038)
T ss_dssp ESCCTTHH-----HHHHHHH---HHHCS---------SEEEEEEESSCCCSTTCTTSCCHHHHHCS---EEEEECHHHHH
T ss_pred Eccchhcc-----hHHHHHH---HHhCC---------cccEEEEeCCccccccchhhhHHHHHhCC---eeEeecHHHHH
Confidence 99999852 2223333 33332 5789999999975421 122233321 10000
Q ss_pred -cccCCCCcEEEEEecCCccchhhhHhHHHHH-----HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCC
Q 005741 363 -TSFFRPNLRFSVKHSKTSSRASYKKDFCQLI-----DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNI 436 (679)
Q Consensus 363 -~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (679)
..+.. ++.+. ..... ..+.... ..+... . ....+
T Consensus 468 ~dg~l~-p~~v~--y~~v~------~~~~~~~~e~d~~~~~~i----~-~~~~l-------------------------- 507 (1038)
T 2w00_A 468 RDEKVL-KFKVD--YNDVR------PQFKSLETETDEKKLSAA----E-NQQAF-------------------------- 507 (1038)
T ss_dssp HHTSSC-CEEEE--ECCCC------GGGHHHHTCCCHHHHHHT----C-STTTT--------------------------
T ss_pred hCCCcC-CeEEE--EEecc------chhhhccccccHHHHHHH----H-HHHHh--------------------------
Confidence 01111 11111 10000 0000000 000000 0 00000
Q ss_pred CCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHH----HhhhccC----
Q 005741 437 GDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAE----RLSMLQE---- 508 (679)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ll~~l~~---- 508 (679)
....+... +++....
T Consensus 508 ---------------------------------------------------------~~~~ri~~I~~~Il~~~~~~~~~ 530 (1038)
T 2w00_A 508 ---------------------------------------------------------LHPMRIQEITQYILNNFRQKTHR 530 (1038)
T ss_dssp ---------------------------------------------------------TCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------------------------------cCHHHHHHHHHHHHHHHHHhhhh
Confidence 00000111 1111110
Q ss_pred ---CCCCCcEEEEeCchhHHHHHHHHHHhCC------------CcE-EEecCC----------C----------CH----
Q 005741 509 ---PLEDGLTIIYVPTRKETLSIAKYLCGFG------------VKA-AAYNAS----------L----------PK---- 548 (679)
Q Consensus 509 ---~~~~~~~IVF~~t~~~~~~l~~~L~~~~------------~~~-~~~hg~----------~----------~~---- 548 (679)
.....++||||+++..|..+++.|.+.+ +.+ ..+||+ + ++
T Consensus 531 ~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~ 610 (1038)
T 2w00_A 531 TFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKE 610 (1038)
T ss_dssp SSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHH
T ss_pred hcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHH
Confidence 1124589999999999999999998754 444 456642 2 22
Q ss_pred -------------------------HHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhcc
Q 005741 549 -------------------------SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603 (679)
Q Consensus 549 -------------------------~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 603 (679)
.+|..++++|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||+
T Consensus 611 ~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRt 689 (1038)
T 2w00_A 611 FLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRT 689 (1038)
T ss_dssp HHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhcc
Confidence 248889999999999999999999999999999 678999999999999999999
Q ss_pred ccCCCC----ceEEEEec
Q 005741 604 GRDGHL----ADCVLYAN 617 (679)
Q Consensus 604 gR~G~~----g~~~~l~~ 617 (679)
+|.+.. |.++.|++
T Consensus 690 nR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 690 NRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCCCCTTCCSEEEEESSC
T ss_pred CcCCCCCCCcEEEEEccc
Confidence 998764 66666654
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=3e-29 Score=249.25 Aligned_cols=181 Identities=20% Similarity=0.327 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----------cCCeEEEEcCchH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLIS 224 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----------~~~~vLvl~Pt~~ 224 (679)
.+++.+.+.|. .+||.+|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++
T Consensus 35 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 35 NFPANVMDVIA-RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE 113 (242)
T ss_dssp TCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHH
Confidence 57778888887 46999999999999999999999999999999999999999974 3778999999999
Q ss_pred HHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 225 L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
|+.|+.+.+.++ ++.+..+.++..... +...+..+++|+|+||+++.+++. .+...+.++++||+||||++.+
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGP-QIRDLERGVEICIATPGRLIDFLE--CGKTNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHH-HHHHHHHCCSEEEECHHHHHHHHH--HTSCCCTTCCEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHH-HHHHhcCCCCEEEECHHHHHHHHH--cCCCCcccccEEEEeCHHHHhh
Confidence 999999888775 777887777766544 333444568999999999998876 5555678999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
+| |...+..+ ++.++++.|+++||||++..+...+..+++
T Consensus 191 ~~--~~~~~~~i-----------~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 191 MG--FEPQIRKI-----------VDQIRPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp TT--CHHHHHHH-----------HTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred hC--cHHHHHHH-----------HHhCCccceEEEEEeecCHHHHHHHHHHCC
Confidence 88 89988888 455566899999999999988887777764
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=247.28 Aligned_cols=181 Identities=23% Similarity=0.289 Sum_probs=146.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------------cCCeEEEEcCch
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLI 223 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------------~~~~vLvl~Pt~ 223 (679)
.+.+.+.+.|.+ +||.+|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++||+
T Consensus 26 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 26 QQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp TTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred ccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 466778888874 5999999999999999999999999999999999999999874 578899999999
Q ss_pred HHHHHHHHHHHhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 224 SLMHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 224 ~L~~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
+|+.|+.+.+.++ ++.+..+.++..... +...+..+++|+|+||+++.+++. .....+.++++||+||||++.+
T Consensus 105 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iiv~Tp~~l~~~~~--~~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 105 ELALHVEAECSKYSYKGLKSICIYGGRNRNG-QIEDISKGVDIIIATPGRLNDLQM--NNSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEECC-------CHHHHHSCCSEEEECHHHHHHHHH--TTCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCCChHH-HHHHhcCCCCEEEECHHHHHHHHH--cCCcCcccceEEEEECHHHHhc
Confidence 9999999999986 567777776655433 333445668999999999988765 4455678899999999999998
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
++ |...+..+. ..++++.|+++||||++..+...+..+++
T Consensus 182 ~~--~~~~~~~i~-----------~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 221 (228)
T 3iuy_A 182 ME--FEPQIRKIL-----------LDVRPDRQTVMTSATWPDTVRQLALSYLK 221 (228)
T ss_dssp TT--CHHHHHHHH-----------HHSCSSCEEEEEESCCCHHHHHHHHTTCS
T ss_pred cc--hHHHHHHHH-----------HhCCcCCeEEEEEeeCCHHHHHHHHHHCC
Confidence 88 888888873 33345789999999999988887766654
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=1.2e-28 Score=241.04 Aligned_cols=181 Identities=15% Similarity=0.226 Sum_probs=145.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||.+|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++||++|+.|+
T Consensus 10 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 10 PFQPFIIEAIK-TLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp CCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHH
Confidence 46778888887 56999999999999999999999999999999999999999975 267999999999999999
Q ss_pred HHHHHhc--------CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC
Q 005741 230 CSKLSKH--------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 230 ~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~ 301 (679)
.+.+.++ ++.+..+.++... ......+...++|+|+||+++.+++. .+...+.++++||+||||++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~Iiv~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~~~~~ 165 (219)
T 1q0u_A 89 YHETLKITKFCPKDRMIVARCLIGGTDK-QKALEKLNVQPHIVIGTPGRINDFIR--EQALDVHTAHILVVDEADLMLDM 165 (219)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHH-HHTTCCCSSCCSEEEECHHHHHHHHH--TTCCCGGGCCEEEECSHHHHHHT
T ss_pred HHHHHHHhhhcccccceEEEEEeCCCCH-HHHHHHcCCCCCEEEeCHHHHHHHHH--cCCCCcCcceEEEEcCchHHhhh
Confidence 9998875 4566666655432 22222334468999999999988776 44456778999999999999988
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
+ |...+..+ +..++...|+++||||++..+.+.+...+.
T Consensus 166 ~--~~~~l~~i-----------~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~ 204 (219)
T 1q0u_A 166 G--FITDVDQI-----------AARMPKDLQMLVFSATIPEKLKPFLKKYME 204 (219)
T ss_dssp T--CHHHHHHH-----------HHTSCTTCEEEEEESCCCGGGHHHHHHHCS
T ss_pred C--hHHHHHHH-----------HHhCCcccEEEEEecCCCHHHHHHHHHHcC
Confidence 7 77766666 333445789999999999988877777664
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=245.20 Aligned_cols=182 Identities=24% Similarity=0.297 Sum_probs=148.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----------cCCeEEEEcCchHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPLISL 225 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----------~~~~vLvl~Pt~~L 225 (679)
.+.+.+.+.|.+ +||.+|+++|.++++.++.++|+++++|||+|||++|++|++. .+.++|||+||++|
T Consensus 60 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~L 138 (262)
T 3ly5_A 60 LVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTREL 138 (262)
T ss_dssp CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred ccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHH
Confidence 377888899984 7999999999999999999999999999999999999999974 47889999999999
Q ss_pred HHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC
Q 005741 226 MHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 226 ~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~ 301 (679)
+.|+.+.++++ +..+..+.++...... ...+..+++|+|+||+++.+++.. .....+.++++|||||||++.++
T Consensus 139 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 139 AMQTFGVLKELMTHHVHTYGLIMGGSNRSAE-AQKLGNGINIIVATPGRLLDHMQN-TPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEECSSSCHHHH-HHHHHHCCSEEEECHHHHHHHHHH-CTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCceEEEEECCCCHHHH-HHHhcCCCCEEEEcHHHHHHHHHc-cCCcccccCCEEEEcChHHHhhh
Confidence 99999999885 4556666666554443 333444589999999999876652 11245678999999999999998
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
| |.+.+..+. +.++...|+++||||++..+.......+.
T Consensus 217 ~--~~~~l~~i~-----------~~~~~~~q~l~~SAT~~~~v~~~~~~~l~ 255 (262)
T 3ly5_A 217 G--FEEELKQII-----------KLLPTRRQTMLFSATQTRKVEDLARISLK 255 (262)
T ss_dssp T--CHHHHHHHH-----------HHSCSSSEEEEECSSCCHHHHHHHHHHCS
T ss_pred h--HHHHHHHHH-----------HhCCCCCeEEEEEecCCHHHHHHHHHHcC
Confidence 8 888888873 33345789999999999988877666654
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=6.2e-28 Score=233.66 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||.+|+++|.++++.+++++|+++++|||+|||++|++|++. .++++||++||++|+.|+
T Consensus 9 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 9 CLKRELLMGIF-EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp CCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHH
Confidence 46788888887 57999999999999999999999999999999999999999974 356899999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005741 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.+.+.++ ++.+..+.++..... ........++|+|+||+++.+++. .+...+.++++||+||||++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~lViDEah~~~~~~-- 162 (206)
T 1vec_A 88 SQICIQVSKHMGGAKVMATTGGTNLRD-DIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQD-- 162 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHH-HHHHTTSCCSEEEECHHHHHHHHH--TTCSCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHHHHhhcCCceEEEEeCCccHHH-HHHhcCCCCCEEEeCHHHHHHHHH--cCCcCcccCCEEEEEChHHhHhhC--
Confidence 9999875 455666666554433 344455678999999999987766 444557789999999999998766
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
|...+..+. ..++++.|+++||||++..+...+...++
T Consensus 163 ~~~~l~~i~-----------~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 163 FVQIMEDII-----------LTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp THHHHHHHH-----------HHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred cHHHHHHHH-----------HhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 777777763 22344789999999999988887777764
No 64
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=8.2e-28 Score=239.47 Aligned_cols=182 Identities=22% Similarity=0.276 Sum_probs=149.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++||++|+.|+
T Consensus 49 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 49 GVTDVLCEACD-QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp TCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHH
Confidence 46777888887 57999999999999999999999999999999999999999974 356899999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.++++ ++.+..+.++..... +.......++|+|+||+++.+++... +...+.++++||+||||++.+++ |
T Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~~--~ 203 (249)
T 3ber_A 128 SEQFEALGSSIGVQSAVIVGGIDSMS-QSLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNMD--F 203 (249)
T ss_dssp HHHHHHHHGGGTCCEEEECTTSCHHH-HHHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHTT--C
T ss_pred HHHHHHHhccCCeeEEEEECCCChHH-HHHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhccC--h
Confidence 9998876 677777777665443 33445567899999999998876621 23456789999999999999887 8
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
...+..+ +..++++.|+++||||++..+.+.+...+.
T Consensus 204 ~~~l~~i-----------~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~ 240 (249)
T 3ber_A 204 ETEVDKI-----------LKVIPRDRKTFLFSATMTKKVQKLQRAALK 240 (249)
T ss_dssp HHHHHHH-----------HHSSCSSSEEEEEESSCCHHHHHHHHHHCS
T ss_pred HHHHHHH-----------HHhCCCCCeEEEEeccCCHHHHHHHHHHCC
Confidence 8888777 334455789999999999888776666664
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=3.1e-28 Score=241.06 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=142.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++||++|+.|+
T Consensus 36 ~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 36 NLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 114 (237)
T ss_dssp CCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHH
Confidence 46777888886 57999999999999999999999999999999999999999974 467999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.++++ ++.+..+.++............+.++|+|+||+++.+++. .+...+.++++||+||||++.+++ |
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~~~~~~--~ 190 (237)
T 3bor_A 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN--RRYLSPKWIKMFVLDEADEMLSRG--F 190 (237)
T ss_dssp HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHH--TTSSCSTTCCEEEEESHHHHHHTT--C
T ss_pred HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHH--hCCcCcccCcEEEECCchHhhccC--c
Confidence 9999886 4566666666554443333334458999999999988776 445567789999999999998887 7
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
...+..+. +.++...|+++||||++..+.+.+..++.
T Consensus 191 ~~~l~~i~-----------~~~~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 191 KDQIYEIF-----------QKLNTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp HHHHHHHH-----------HHSCTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred HHHHHHHH-----------HhCCCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 77766662 22344789999999999988877777664
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=8.4e-28 Score=235.29 Aligned_cols=181 Identities=18% Similarity=0.230 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------CCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||..|+++|.++++.+++++|+++++|||+|||++|++|++.. +.++||++||++|+.|+
T Consensus 20 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 20 LLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp CCCHHHHHHHH-HTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHH
Confidence 56778888887 469999999999999999999999999999999999999999753 45999999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC-CC
Q 005741 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW-GH 303 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~-g~ 303 (679)
.+.++++ ++.+..+.++............+.++|+|+||+++..++. .....+.++++||+||||++.++ +
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~lViDEah~~~~~~~- 175 (220)
T 1t6n_A 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR--NKSLNLKHIKHFILDECDKMLEQLD- 175 (220)
T ss_dssp HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEESHHHHHSSHH-
T ss_pred HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHH--hCCCCcccCCEEEEcCHHHHhcccC-
Confidence 9999886 5777777777665544444445567999999999988776 44456788999999999999763 4
Q ss_pred CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHc
Q 005741 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (679)
Q Consensus 304 ~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l 352 (679)
|...+..+ ++..+...|+++||||++....+.+..++
T Consensus 176 -~~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 176 -MRRDVQEI-----------FRMTPHEKQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp -HHHHHHHH-----------HHTSCSSSEEEEEESCCCTTTHHHHHTTC
T ss_pred -cHHHHHHH-----------HHhCCCcCeEEEEEeecCHHHHHHHHHHc
Confidence 55555555 23334578999999999988777555555
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=4.6e-27 Score=264.99 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=103.3
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC--
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW-- 589 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~-- 589 (679)
+.++||||+|++.++.+++.|.+.|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|.
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADK 518 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTS
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcc
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ---CCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 590 ---PQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 590 ---p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|.|..+|+||+|||||.| .|.+++|++..+
T Consensus 519 ~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 519 EGFLRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp CSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred cCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 899999999999999995 899999997654
No 68
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=1.2e-27 Score=235.64 Aligned_cols=180 Identities=21% Similarity=0.244 Sum_probs=143.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++||++|+.|+
T Consensus 30 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 30 LLSRPVLEGLR-AAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp TCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHH
Confidence 46677888887 57999999999999999999999999999999999999999864 357999999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005741 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.+.+.++ ++.+..+.++..... +...+ ..++|+|+||+++.+++. .+...+.++++||+||||++.++|.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~-~~~~Iiv~Tp~~l~~~~~--~~~~~~~~~~~lViDEah~~~~~~~- 183 (230)
T 2oxc_A 109 HSVITAIGIKMEGLECHVFIGGTPLSQ-DKTRL-KKCHIAVGSPGRIKQLIE--LDYLNPGSIRLFILDEADKLLEEGS- 183 (230)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTSCHHH-HHHHT-TSCSEEEECHHHHHHHHH--TTSSCGGGCCEEEESSHHHHHSTTS-
T ss_pred HHHHHHHhcccCCceEEEEeCCCCHHH-HHHhc-cCCCEEEECHHHHHHHHh--cCCcccccCCEEEeCCchHhhcCcc-
Confidence 9999886 456666666655433 22333 468999999999988776 4455677899999999999988763
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHc
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l 352 (679)
|...+..+. ..++...|+++||||++..+.+.+..++
T Consensus 184 ~~~~~~~i~-----------~~~~~~~~~l~lSAT~~~~~~~~~~~~~ 220 (230)
T 2oxc_A 184 FQEQINWIY-----------SSLPASKQMLAVSATYPEFLANALTKYM 220 (230)
T ss_dssp SHHHHHHHH-----------HHSCSSCEEEEEESCCCHHHHHHHTTTC
T ss_pred hHHHHHHHH-----------HhCCCCCeEEEEEeccCHHHHHHHHHHc
Confidence 777777662 2334478899999999887666554444
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=2.1e-27 Score=237.64 Aligned_cols=178 Identities=19% Similarity=0.269 Sum_probs=142.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---------------cCCeEEEEcCchHH
Q 005741 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------------TGKVVVVISPLISL 225 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------------~~~~vLvl~Pt~~L 225 (679)
+.+.|. .+||.+|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|
T Consensus 34 l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 112 (253)
T 1wrb_A 34 IRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTREL 112 (253)
T ss_dssp TTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHH
T ss_pred HHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHH
Confidence 334443 56999999999999999999999999999999999999999973 13689999999999
Q ss_pred HHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC
Q 005741 226 MHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 226 ~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~ 301 (679)
+.|+.+.+.++ ++.+..+.++..... +...+...++|+|+||+++.+++. .....+.++++||+||||++.++
T Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~~~~~ 189 (253)
T 1wrb_A 113 AIQILSESQKFSLNTPLRSCVVYGGADTHS-QIREVQMGCHLLVATPGRLVDFIE--KNKISLEFCKYIVLDEADRMLDM 189 (253)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEECSSSCSHH-HHHHHSSCCSEEEECHHHHHHHHH--TTSBCCTTCCEEEEETHHHHHHT
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHH-HHHHhCCCCCEEEECHHHHHHHHH--cCCCChhhCCEEEEeCHHHHHhC
Confidence 99999999885 466677777665544 334455678999999999988776 44456788999999999999988
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCC--CCCEEEEEccCChhhHHHHHHHcC
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKF--DIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
+ |...+..+.... ..+. ..|+++||||++..+.......+.
T Consensus 190 ~--~~~~~~~i~~~~---------~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 190 G--FEPQIRKIIEES---------NMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp T--CHHHHHHHHHSS---------CCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred c--hHHHHHHHHhhc---------cCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 8 888887773210 1122 578999999999888776666664
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=3e-27 Score=228.99 Aligned_cols=181 Identities=19% Similarity=0.220 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---------cCCeEEEEcCchHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGKVVVVISPLISLM 226 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------~~~~vLvl~Pt~~L~ 226 (679)
.+.+.+.+.|. .+|+..|+++|.++++.+++++++++++|||+|||++|++|++. .++++||++|+++|+
T Consensus 7 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~ 85 (207)
T 2gxq_A 7 PLKPEILEALH-GRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELA 85 (207)
T ss_dssp CCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHH
Confidence 46778888887 46999999999999999999999999999999999999999864 367899999999999
Q ss_pred HHHHHHHHhc--CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005741 227 HDQCSKLSKH--GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 227 ~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.|+.+.+.++ .+.+..+.++...... .......++|+|+||+++.+++. .+...+.++++||+||||++.+++
T Consensus 86 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~iViDEah~~~~~~-- 160 (207)
T 2gxq_A 86 LQVASELTAVAPHLKVVAVYGGTGYGKQ-KEALLRGADAVVATPGRALDYLR--QGVLDLSRVEVAVLDEADEMLSMG-- 160 (207)
T ss_dssp HHHHHHHHHHCTTSCEEEECSSSCSHHH-HHHHHHCCSEEEECHHHHHHHHH--HTSSCCTTCSEEEEESHHHHHHTT--
T ss_pred HHHHHHHHHHhhcceEEEEECCCChHHH-HHHhhCCCCEEEECHHHHHHHHH--cCCcchhhceEEEEEChhHhhccc--
Confidence 9999999997 4566677766655443 33334568999999999988776 455567889999999999998877
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
|...+..+ +...+.+.|++++|||++..+...+...++
T Consensus 161 ~~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 198 (207)
T 2gxq_A 161 FEEEVEAL-----------LSATPPSRQTLLFSATLPSWAKRLAERYMK 198 (207)
T ss_dssp CHHHHHHH-----------HHTSCTTSEEEEECSSCCHHHHHHHHHHCS
T ss_pred hHHHHHHH-----------HHhCCccCeEEEEEEecCHHHHHHHHHHcC
Confidence 78777776 333445789999999999887665555553
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=234.71 Aligned_cols=180 Identities=23% Similarity=0.291 Sum_probs=143.3
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----------cCCeEEEEcCchHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPLISL 225 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----------~~~~vLvl~Pt~~L 225 (679)
.+.+.+.+.|. .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++||++|
T Consensus 31 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L 109 (236)
T 2pl3_A 31 PLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTREL 109 (236)
T ss_dssp CCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHH
Confidence 47778888887 46999999999999999999999999999999999999999873 37899999999999
Q ss_pred HHHHHHHHHhcC----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC
Q 005741 226 MHDQCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 226 ~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~ 301 (679)
+.|+.+.+++++ +.+..+.++....... ..+ ..++|+|+||+++.+++.. .....+.++++||+||||++.++
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~iiv~Tp~~l~~~l~~-~~~~~~~~~~~lViDEah~~~~~ 186 (236)
T 2pl3_A 110 AYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA-ERI-NNINILVCTPGRLLQHMDE-TVSFHATDLQMLVLDEADRILDM 186 (236)
T ss_dssp HHHHHHHHHHHTTTSSCCEEEECCC--CHHHH-HHH-TTCSEEEECHHHHHHHHHH-CSSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH-HhC-CCCCEEEECHHHHHHHHHh-cCCcccccccEEEEeChHHHhcC
Confidence 999999998864 6677777766554332 223 4689999999999876652 11244678999999999999988
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHc
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l 352 (679)
+ |...+..+ +..++...|+++||||++..+.......+
T Consensus 187 ~--~~~~~~~i-----------~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 224 (236)
T 2pl3_A 187 G--FADTMNAV-----------IENLPKKRQTLLFSATQTKSVKDLARLSL 224 (236)
T ss_dssp T--THHHHHHH-----------HHTSCTTSEEEEEESSCCHHHHHHHHHSC
T ss_pred C--cHHHHHHH-----------HHhCCCCCeEEEEEeeCCHHHHHHHHHhC
Confidence 8 77777766 33445578899999999988766444443
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=3.4e-27 Score=231.67 Aligned_cols=180 Identities=20% Similarity=0.234 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++|+++|+.|+
T Consensus 20 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 20 ELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp TCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHH
Confidence 46777888887 56999999999999999999999999999999999999999874 467999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005741 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+.++ ++.+..+.++..... ....+ ..++|+|+||+++.+++. .+...+.++++||+||||++.+++ |
T Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~-~~~~iiv~Tp~~l~~~~~--~~~~~~~~~~~iViDEah~~~~~~--~ 172 (224)
T 1qde_A 99 QKVVMALAFHMDIKVHACIGGTSFVE-DAEGL-RDAQIVVGTPGRVFDNIQ--RRRFRTDKIKMFILDEADEMLSSG--F 172 (224)
T ss_dssp HHHHHHHTTTSCCCEEEECC-----------C-TTCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEETHHHHHHTT--C
T ss_pred HHHHHHHhcccCceEEEEeCCcchHH-HHhcC-CCCCEEEECHHHHHHHHH--hCCcchhhCcEEEEcChhHHhhhh--h
Confidence 9999875 566666666554332 22222 238999999999987766 444556789999999999998877 7
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
...+..+. ..+++..|+++||||++..+...+..+++
T Consensus 173 ~~~l~~i~-----------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 173 KEQIYQIF-----------TLLPPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp HHHHHHHH-----------HHSCTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred HHHHHHHH-----------HhCCccCeEEEEEeecCHHHHHHHHHHCC
Confidence 77776663 22344789999999999988777766664
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=243.89 Aligned_cols=196 Identities=20% Similarity=0.228 Sum_probs=145.4
Q ss_pred CccccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-------cCCeEEEE
Q 005741 147 CPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------TGKVVVVI 219 (679)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-------~~~~vLvl 219 (679)
.+.++.....+.+.+.+.|.+ +||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .+.++|||
T Consensus 26 ~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil 104 (245)
T 3dkp_A 26 TFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALII 104 (245)
T ss_dssp SHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEE
T ss_pred CHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 344443334577778888874 6999999999999999999999999999999999999999974 46689999
Q ss_pred cCchHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecc
Q 005741 220 SPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEV 295 (679)
Q Consensus 220 ~Pt~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEa 295 (679)
+||++|+.|+.+.+.++ ++.+..+.++..............++|+|+||+++..++........+.++++||+|||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEa 184 (245)
T 3dkp_A 105 SPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDES 184 (245)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSH
T ss_pred eCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeCh
Confidence 99999999999999886 44544444332111111122345689999999999887762211345778999999999
Q ss_pred cccccCC-CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 296 HCVSKWG-HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 296 H~l~~~g-~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
|++.+++ ..|...+..+. ... .++..|+++||||++..+...+...++
T Consensus 185 h~~~~~~~~~~~~~~~~i~---~~~-------~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 185 DKLFEDGKTGFRDQLASIF---LAC-------TSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp HHHHHHC--CHHHHHHHHH---HHC-------CCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred HHhcccccccHHHHHHHHH---Hhc-------CCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 9998754 23667666662 111 123688999999999888776666653
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=241.81 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHH
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~ 227 (679)
.+.+.+...|. .+||..|+++|.++++.++.| +|+++++|||||||++|++|++. .++++|||+||++|+.
T Consensus 98 ~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~ 176 (300)
T 3fmo_B 98 RLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (300)
T ss_dssp TCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHH
Confidence 56778888887 479999999999999999987 99999999999999999999984 3558999999999999
Q ss_pred HHHHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-C
Q 005741 228 DQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-W 301 (679)
Q Consensus 228 q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~ 301 (679)
|+.+.+..+ ++.+....++...... ....++|+|+||+++.+++.. .+.+.+.++++|||||||++.+ +
T Consensus 177 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~IlV~TP~~l~~~l~~-~~~~~l~~l~~lVlDEad~l~~~~ 251 (300)
T 3fmo_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIATQ 251 (300)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESTTCCCCTT----CCCCCSEEEECHHHHHHHHTT-TCCCCGGGCSEEEETTHHHHHHST
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccHhhh----hcCCCCEEEECHHHHHHHHHh-cCCCChhhceEEEEeCHHHHhhcc
Confidence 999888875 3556666665543221 145679999999999887752 1345678899999999999987 5
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
| |...+..| +..+++..|+++||||++..+.......+.
T Consensus 252 ~--~~~~~~~i-----------~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 252 G--HQDQSIRI-----------QRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp T--HHHHHHHH-----------HTTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred C--cHHHHHHH-----------HHhCCCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 6 77777777 445566899999999999988887766664
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=3.7e-25 Score=249.34 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=103.7
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC--
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW-- 589 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~-- 589 (679)
+.++||||+|++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|.
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK 524 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccc
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ---CCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 590 ---PQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 590 ---p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|.+..+|+||+|||||. ..|.|++|++..+
T Consensus 525 ~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 525 EGFLRSERSLIQTIGRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp CTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCC
T ss_pred ccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCC
Confidence 99999999999999998 7899999997654
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=8.4e-24 Score=233.45 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=106.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005741 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++++-++.+|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++ ..+..++||+||++|+.|.++.+..+
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 44455567899 89999999999999998 9999999999999999995 36789999999999999999888774
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHHHH------HHhhc---CceEEEeecccccc
Q 005741 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQR------LAESR---GIALFAIDEVHCVS 299 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~~~------~~~~~---~~~lvViDEaH~l~ 299 (679)
++++..+.+|.... ..... ..++|+|+||+++ .+++. .+ ...++ .+.++||||||+++
T Consensus 145 ~~lGLsv~~i~Gg~~~~--~r~~a-y~~DIvyGTpgrlgfDyLr--d~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPA--ERRKA-YLADVTYVTNSELGFDYLR--DNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHH--HHHHH-HTSSEEEEEHHHHHHHHHH--HTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHH--HHHHH-cCCCEEEECchhhhhHHHH--HhhhcchhhcccccCCCcceEEEechHHHH
Confidence 88888888876632 22222 2489999999999 67766 33 13456 89999999999986
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=8.8e-25 Score=202.64 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=114.3
Q ss_pred ccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEeccccc
Q 005741 495 LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574 (679)
Q Consensus 495 ~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~ 574 (679)
...|...+.+++.. ...+++||||++++.++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 19 ~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 97 (163)
T 2hjv_A 19 EENKFSLLKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 97 (163)
T ss_dssp GGGHHHHHHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTT
T ss_pred hHHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 34466666666654 34679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 575 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+
T Consensus 98 Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 98 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp TCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred CCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 9999999999999999999999999999999999999999997543
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.3e-24 Score=203.11 Aligned_cols=122 Identities=22% Similarity=0.349 Sum_probs=113.1
Q ss_pred cCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccC
Q 005741 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (679)
Q Consensus 496 ~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~G 575 (679)
..|...+.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 16 ~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp GGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 34566666666543 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecC
Q 005741 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 576 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++
T Consensus 95 ldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~ 137 (172)
T 1t5i_A 95 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 137 (172)
T ss_dssp CCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred cchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcC
Confidence 9999999999999999999999999999999999999999974
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=8.8e-25 Score=211.61 Aligned_cols=124 Identities=27% Similarity=0.379 Sum_probs=112.4
Q ss_pred cCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccC
Q 005741 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (679)
Q Consensus 496 ~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~G 575 (679)
..|...+.+.+.. ...+++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|
T Consensus 16 ~~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 16 RGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TSHHHHHHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 3455555555543 346799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 576 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||+|++++||+||+|++...|+||+|||||.|+.|.|++|+++.+
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 999999999999999999999999999999999999999998776
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=6.3e-25 Score=207.71 Aligned_cols=127 Identities=25% Similarity=0.412 Sum_probs=103.6
Q ss_pred ccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEeccccc
Q 005741 495 LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574 (679)
Q Consensus 495 ~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~ 574 (679)
...|...+.++|....+..++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 34567777777777656779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005741 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 575 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+.
T Consensus 109 Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 109 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp --CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 99999999999999999999999999999999999999999986554
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=204.64 Aligned_cols=123 Identities=25% Similarity=0.363 Sum_probs=111.7
Q ss_pred ccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEeccccc
Q 005741 495 LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574 (679)
Q Consensus 495 ~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~ 574 (679)
...|...+++.|... ..++||||++++.++.+++.|...++.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 39 ~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~ 116 (191)
T 2p6n_A 39 EEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116 (191)
T ss_dssp GGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHT
T ss_pred hHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhc
Confidence 345667777777664 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005741 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 575 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.
T Consensus 117 Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 999999999999999999999999999999999999999999764
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=201.96 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=108.1
Q ss_pred chHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcc
Q 005741 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGID 577 (679)
Q Consensus 498 ~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiD 577 (679)
|...+.+++.. ...+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 21 K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid 99 (175)
T 2rb4_A 21 KYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGID 99 (175)
T ss_dssp HHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTC
T ss_pred HHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCC
Confidence 44555555544 45679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEeCCC------CCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 578 KLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 578 ip~v~~VI~~d~p------~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+
T Consensus 100 ~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 100 VKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp CTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred cccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 9999999999999 899999999999999999999999997544
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=2.8e-24 Score=199.72 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=108.0
Q ss_pred chHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcc
Q 005741 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGID 577 (679)
Q Consensus 498 ~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiD 577 (679)
|...+.+++.. ...+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 17 K~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d 95 (165)
T 1fuk_A 17 KYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 95 (165)
T ss_dssp HHHHHHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred HHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 55555555554 35679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 578 KLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 578 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
+|++++||+||+|+++.+|+||+||+||.|+.|.|++|++..+
T Consensus 96 ~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 96 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp CCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 9999999999999999999999999999999999999998654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=1.5e-23 Score=212.39 Aligned_cols=124 Identities=27% Similarity=0.381 Sum_probs=109.9
Q ss_pred cCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccC
Q 005741 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (679)
Q Consensus 496 ~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~G 575 (679)
..|...+.+.+... ..+++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|
T Consensus 13 ~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 13 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 34555555555443 37899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005741 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 576 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||+|++++||+||+|++...|+||+|||||.|+.|.|++|+++.+
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 999999999999999999999999999999999999999999877
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.6e-21 Score=213.79 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=91.4
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005741 169 FGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~----~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
.|| +|||+|.+++.. +..|+++++.+|||+|||++|++|++..+++++|++||++|+.|+.+++.+++++.+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 899999998654 457899999999999999999999999999999999999999999999999877766654
Q ss_pred CCCCc--------H------------------------HHHH--------------HHHcCCccEEEEChHHHHHHHHHH
Q 005741 245 SGQPD--------N------------------------KVEQ--------------KALRGMYSIIYVCPETVIRLIKPL 278 (679)
Q Consensus 245 ~~~~~--------~------------------------~~~~--------------~~~~~~~~Ili~Tp~~l~~ll~~~ 278 (679)
+...- . ..+. +.....++|||+|+..+.+...
T Consensus 83 gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~-- 160 (540)
T 2vl7_A 83 GKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI-- 160 (540)
T ss_dssp --------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH--
T ss_pred CCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH--
Confidence 42210 0 0000 0012346999999999876433
Q ss_pred HHHHh-------hcCceEEEeecccccc
Q 005741 279 QRLAE-------SRGIALFAIDEVHCVS 299 (679)
Q Consensus 279 ~~~~~-------~~~~~lvViDEaH~l~ 299 (679)
.+... +....++||||||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhhCcccccccCcCCCEEEEEccccHH
Confidence 22222 3467899999999993
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=1.5e-24 Score=202.55 Aligned_cols=126 Identities=21% Similarity=0.356 Sum_probs=114.0
Q ss_pred CchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005741 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 497 ~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
.|...+.+++.. ...+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 16 ~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 16 HKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 344444444443 3467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCc
Q 005741 577 DKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (679)
Q Consensus 577 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~ 623 (679)
|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|++..+...
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 99999999999999999999999999999999999999998776543
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=190.08 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=109.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---------cCCeEEEEcCchHHHHH-HHHHHHhc---
Q 005741 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGKVVVVISPLISLMHD-QCSKLSKH--- 236 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------~~~~vLvl~Pt~~L~~q-~~~~l~~~--- 236 (679)
...+|+++|.++++.+++++++++.+|||+|||++|+++++. .++++||++|+++|+.| +.+.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 344899999999999999999999999999999999988874 27899999999999999 66677665
Q ss_pred CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHH----HHhhcCceEEEeecccccccCCCCchHHHHHH
Q 005741 237 GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR----LAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~----~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
++.+..+.++.......... ...++|+|+||+++..++..... ...+.++++|||||||++...+ .+...+..+
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~~~~~~~ 187 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYNNIMRHY 187 (216)
T ss_dssp TSCEEECCC---CCCCHHHH-HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhh-ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC-cHHHHHHHH
Confidence 56676666654432211111 22479999999999877663211 1346789999999999997543 134433333
Q ss_pred HHHH-Hhhc-cccccccCCCCCEEEEEcc
Q 005741 313 SVLR-ENFG-ANNLKSLKFDIPLMALTAT 339 (679)
Q Consensus 313 ~~~~-~~~~-~~~~~~~~~~~~~l~lSAT 339 (679)
.... .... ...-....+..++++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2111 0000 0000111247889999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=2.3e-18 Score=191.10 Aligned_cols=128 Identities=17% Similarity=0.078 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHH----HcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhc----CCceE
Q 005741 170 GHSSLKNFQKEALSAW----LAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH----GVTAC 241 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~----l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~----~~~~~ 241 (679)
|| ++||+|.+++..+ ..|+++++.+|||+|||++|++|++..++++||++||++|+.|+.+++..+ +++++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 34 6999999987754 468999999999999999999999999999999999999999999999886 56666
Q ss_pred EEcCCCC--------------------------------cHHHH------------------HHHHcCCccEEEEChHHH
Q 005741 242 FLGSGQP--------------------------------DNKVE------------------QKALRGMYSIIYVCPETV 271 (679)
Q Consensus 242 ~~~~~~~--------------------------------~~~~~------------------~~~~~~~~~Ili~Tp~~l 271 (679)
.+.|... ..... .+.....++|||+||..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 6554210 00000 012234579999999988
Q ss_pred HHHHHHHHHHHhh-cCceEEEeeccccccc
Q 005741 272 IRLIKPLQRLAES-RGIALFAIDEVHCVSK 300 (679)
Q Consensus 272 ~~ll~~~~~~~~~-~~~~lvViDEaH~l~~ 300 (679)
.+... .....+ ....++||||||.+.+
T Consensus 160 ~~~~~--~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 160 FIDRY--REFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HCHHH--HTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCHHH--HHhcCCCcCCeEEEEecccchHH
Confidence 86432 221212 3667899999999865
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=1.2e-20 Score=191.53 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhcCC----ceEEEc
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGV----TACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~~----~~~~~~ 244 (679)
+|++||.++++.++.+++.++++|||+|||+++++++.. ..+++|||+||++|+.||.+++.+++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999998889999999999999999877763 345999999999999999999999753 445555
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005741 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
++..... ......+|+|+||+++.+... ..+.++++||+||||++.+ +.+..+ +
T Consensus 193 ~~~~~~~----~~~~~~~I~v~T~~~l~~~~~-----~~~~~~~~vIiDEaH~~~~------~~~~~i-----------l 246 (282)
T 1rif_A 193 GGASKDD----KYKNDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLATG------KSISSI-----------I 246 (282)
T ss_dssp TTCSSTT----CCCTTCSEEEECHHHHTTSCG-----GGGGGEEEEEEETGGGCCH------HHHHHH-----------T
T ss_pred CCCcchh----hhccCCcEEEEchHHHHhhHH-----HHHhhCCEEEEECCccCCc------ccHHHH-----------H
Confidence 5554321 122457999999998764321 2456799999999999963 344444 4
Q ss_pred cccCCCCCEEEEEccCChh
Q 005741 325 KSLKFDIPLMALTATATIQ 343 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~ 343 (679)
..+....++++|||||+..
T Consensus 247 ~~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCTTCCEEEEECSSCCTT
T ss_pred HHhhcCCeEEEEeCCCCCc
Confidence 4454578999999999754
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=3.9e-20 Score=182.09 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCc-eEEEcCCCCcHH
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT-ACFLGSGQPDNK 251 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~-~~~~~~~~~~~~ 251 (679)
+|+++|.++++.+++++++++++|||+|||++++.++...++++||++|+++|+.||.+++.++++. +..+.++..
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~--- 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---
Confidence 7999999999999999999999999999999999888888899999999999999999999999888 666665543
Q ss_pred HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCC
Q 005741 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (679)
Q Consensus 252 ~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~ 331 (679)
...+|+|+||+.+...... ....+++|||||||++...+ + ..+ ...+. ..
T Consensus 170 -------~~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~~--~----~~i---~~~~~---------~~ 219 (237)
T 2fz4_A 170 -------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES--Y----VQI---AQMSI---------AP 219 (237)
T ss_dssp -------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTTT--H----HHH---HHTCC---------CS
T ss_pred -------CcCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCChH--H----HHH---HHhcc---------CC
Confidence 2468999999988765441 12469999999999997543 3 233 22221 56
Q ss_pred CEEEEEccCChhh
Q 005741 332 PLMALTATATIQV 344 (679)
Q Consensus 332 ~~l~lSAT~~~~~ 344 (679)
++++|||||....
T Consensus 220 ~~l~LSATp~r~D 232 (237)
T 2fz4_A 220 FRLGLTATFERED 232 (237)
T ss_dssp EEEEEEESCC---
T ss_pred EEEEEecCCCCCC
Confidence 7999999997653
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=167.67 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----c----CCeEEEEcCchHHHHHHHHHHHhc-C----Cc
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----T----GKVVVVISPLISLMHDQCSKLSKH-G----VT 239 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~----~~~vLvl~Pt~~L~~q~~~~l~~~-~----~~ 239 (679)
.++++|.++++.+..|+++++++|||||||+++.++++. . +..+++++|+++|+.|+.+.+... + ..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 589999999999999999999999999999988777653 1 348999999999999999988763 2 22
Q ss_pred eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc-ccCCCCchHHHHHHHHHHHh
Q 005741 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV-SKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l-~~~g~~f~~~~~~l~~~~~~ 318 (679)
+...... +.......++|+|+||+++.+++.. .+.++++|||||||++ .+.+ |.. ..+..+...
T Consensus 141 ~g~~~~~------~~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~~~~~--~~~--~~l~~i~~~ 205 (235)
T 3llm_A 141 CGYSVRF------ESILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERDINTD--FLL--VVLRDVVQA 205 (235)
T ss_dssp EEEEETT------EEECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCCHHHH--HHH--HHHHHHHHH
T ss_pred EEEeech------hhccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCCcchH--HHH--HHHHHHHhh
Confidence 2111100 0001124578999999999887762 4789999999999985 3322 221 223233322
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005741 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
. ++.|+++||||++... +.++++
T Consensus 206 ~---------~~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 206 Y---------PEVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp C---------TTSEEEEEECSSCCHH---HHHHTT
T ss_pred C---------CCCeEEEEecCCCHHH---HHHHcC
Confidence 2 2688999999998765 455553
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=3.5e-19 Score=178.22 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=92.9
Q ss_pred cCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhCC-Cee-EEEEecc
Q 005741 496 LNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHEN-KLE-VVVATIA 571 (679)
Q Consensus 496 ~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~R~~v~~~F~~g-~~~-vLVaT~~ 571 (679)
..|...+.+.|.+.. .+.++||||+++..++.+++.|... |+.+..+||++++++|..+++.|++| ..+ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 446666666665543 3569999999999999999999885 99999999999999999999999988 677 7999999
Q ss_pred cccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005741 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 572 ~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
+++|||++.+++||+||+||++..|+||+||++|.|+.+.+.++
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 99999999999999999999999999999999999998876443
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.72 E-value=1.5e-15 Score=169.57 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec--ccccCccccc--ccEEEEe
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI--AFGMGIDKLN--VRRIIHY 587 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~--~~~~GiDip~--v~~VI~~ 587 (679)
+++++||+++....+.+++.|.. .... ..-+++..++..+++.|+ ++-.||++|. .+.+|||+|+ ++.||..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 67899999999999999998862 2222 445566678999999999 8889999985 8999999985 7799998
Q ss_pred CCCCC-----------------------------HHHHHHHhhccccCCCCceEEEEecC
Q 005741 588 GWPQS-----------------------------LEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 588 d~p~s-----------------------------~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
++|.. +....|.+||+=|.-..--++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 88732 11236999999997665445555554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.44 E-value=4.3e-07 Score=101.27 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcch--hhhhhhhhc-----cCCeEEEEcCchHHHHHHHH
Q 005741 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKS--LCFQIPALL-----TGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKT--l~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~ 231 (679)
..+...|...|.-..-.+.|++|++.++.++.+++.+++|+||| +.++++++. .+.++++++||..++.+..+
T Consensus 135 ~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHH
Confidence 34556666554322337899999999999999999999999999 567777764 35699999999999999887
Q ss_pred HHHh
Q 005741 232 KLSK 235 (679)
Q Consensus 232 ~l~~ 235 (679)
.+..
T Consensus 215 ~~~~ 218 (608)
T 1w36_D 215 SLGK 218 (608)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 7654
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.33 E-value=1.3e-06 Score=87.38 Aligned_cols=114 Identities=16% Similarity=0.031 Sum_probs=81.7
Q ss_pred HHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcc--
Q 005741 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGID-- 577 (679)
Q Consensus 500 ~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiD-- 577 (679)
..++..+.+. +.+++||+++.+..+.+.++|...++.+..++|.....++. -.+..+.+.+.|.+++-|+|
T Consensus 115 ~~LL~~l~~~--~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~ 187 (328)
T 3hgt_A 115 RDLINLVQEY--ETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYP 187 (328)
T ss_dssp HHHHHHHTTS--CEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSC
T ss_pred HHHHHHHHhC--CCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcc
Confidence 3334444432 55999999999999999999999999999999996553322 12456667666888888886
Q ss_pred ---cccccEEEEeCCCCCHHHH-HHHhhccccCC--C--CceEEEEecCCC
Q 005741 578 ---KLNVRRIIHYGWPQSLEAY-YQEAGRAGRDG--H--LADCVLYANLSS 620 (679)
Q Consensus 578 ---ip~v~~VI~~d~p~s~~~y-~Qr~GRagR~G--~--~g~~~~l~~~~~ 620 (679)
....+.||.||..|++..- +|.+-|++|.| + .-.++-|++...
T Consensus 188 ~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 188 IKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred cccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6789999999999999875 99999999983 3 345555665443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.07 E-value=8.6e-06 Score=91.23 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc--cCCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005741 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL--TGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~--~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
+..+++.|.+|+..++.+.-++|.+|+|+|||.+.. +..+. .+.++|+++||...+.+..+.+.+.++..+-+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~ 254 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL 254 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEEC
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEee
Confidence 456899999999999987788999999999996543 22222 57899999999999999999998877665444
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=2.9e-06 Score=95.68 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEeecCCcchhhhhhh---hhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcC
Q 005741 172 SSLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d-~iv~a~TGsGKTl~~~lp---~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~ 245 (679)
..|++-|++|+..++..++ .||.+|.|||||.+..-. ++.++.++|+++||..-+.++.+++...+...+-++.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~ 265 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGH 265 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecc
Confidence 3689999999999987665 689999999999653322 2347899999999999999999999888777665543
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.87 E-value=1.9e-05 Score=90.23 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc--cCCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005741 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL--TGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~--~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
...+++.|.+|+..++.+.-.+|.+|.|+|||.+.. +..+. .+.++|+++||...+.+..+.+.+.++..+-+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRl 430 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL 430 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEEC
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEee
Confidence 346899999999999987778999999999996543 22222 57899999999999999999998877665444
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.7e-05 Score=90.83 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc--cCCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005741 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL--TGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~--~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
+..+++.|.+|+..++.+.-++|.+|.|+|||.+.. +..+. .+.++|+++||...+.+..+++.+.++..+-+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~ 434 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRL 434 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEee
Confidence 346899999999999877778999999999996543 22222 58899999999999999999998877655443
No 100
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.81 E-value=2.3e-05 Score=53.88 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCc
Q 005741 3 GSGTSRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGS 47 (679)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 47 (679)
++.+++.+ +..|+|||||..-+..||++.| ..++.|++||.+=+
T Consensus 5 ~~~vn~qm-lq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 5 SSGVNRQM-LQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CCSCCHHH-HHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred cchhHHHH-HHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 34566666 7999999999999999999999 89999999997643
No 101
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.77 E-value=3.9e-05 Score=58.09 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCcccC
Q 005741 5 GTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRN 50 (679)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (679)
....++.|.+|++|||+...+.+|+..++=..+-|++||++|....
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGPS 71 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCSS
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 3446889999999999999999999999999999999999986543
No 102
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.72 E-value=5.7e-05 Score=55.70 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=38.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
.++.|..|++|||+...+.+|+..++=..+.|++||+.+...
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 477899999999999999999999999999999999987544
No 103
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.70 E-value=4e-05 Score=84.47 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhh-ccCCeEEEEcCchHHHHHHHHHH
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPAL-LTGKVVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l-~~~~~vLvl~Pt~~L~~q~~~~l 233 (679)
.+++.|++|+..++.++.+++.++.|+|||.+.. +-.+ ..+.++++++||...+....+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 5899999999999988899999999999996432 2222 36889999999988887666544
No 104
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.70 E-value=3.5e-05 Score=52.36 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcC
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (679)
.++.|..|++|||+...+.+|+..++=..+.|+++++.|
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 467899999999999999999999999999999999876
No 105
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.69 E-value=3.6e-05 Score=53.73 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcC
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (679)
.++.|..|++|||+...+.+|+..++=..+.|++|+++|
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 567899999999999999999999999999999999987
No 106
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.62 E-value=4.4e-05 Score=82.25 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=48.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcC----C-CEEEEeecCCcchhhhh--hhhh-ccCC-eEEEEcCchHHHHHHHHHH
Q 005741 168 HFGHSSLKNFQKEALSAWLAH----H-DCLVLAATGSGKSLCFQ--IPAL-LTGK-VVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g----~-d~iv~a~TGsGKTl~~~--lp~l-~~~~-~vLvl~Pt~~L~~q~~~~l 233 (679)
-+.|..|++-|++|+..++.. + .++|.|+.|+|||.+.. +..+ ..+. .+++++||...+....+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 457889999999999977542 3 89999999999996432 2222 2344 7999999988777666554
No 107
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=6.7e-05 Score=52.02 Aligned_cols=40 Identities=25% Similarity=0.495 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcC
Q 005741 6 TSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (679)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (679)
...++.|..|++|||+...+.+|+..+| ..+.|++|+++.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4457889999999999999999999999 999999999864
No 108
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=97.51 E-value=9.4e-05 Score=52.57 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcCc
Q 005741 8 RDEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGS 47 (679)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (679)
.+.-|..|++||| +...+.+|+..++=..+-|+++++++.
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3566999999999 999999999999999999999999875
No 109
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=97.51 E-value=0.00014 Score=51.49 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcCc
Q 005741 5 GTSRDEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGS 47 (679)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (679)
....+.-|..|++||| +...+.+|+..+|=..+-|++++++|+
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 3445778999999999 999999999999999999999998863
No 110
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=97.44 E-value=0.00017 Score=49.43 Aligned_cols=39 Identities=31% Similarity=0.493 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcC
Q 005741 8 RDEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNG 46 (679)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (679)
.+.-|+.|.+||| +.....+|+..++=..+-|++++++|
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 3567899999999 56678999999999999999999976
No 111
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.28 E-value=0.00028 Score=50.18 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHcCCCc-hHHHHHHHHhCCChhhhHHHHhcCcccC
Q 005741 7 SRDEVIAKLIEMGFDD-SDITEAVETVGPSFNDAIEYILNGSVRN 50 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (679)
..+.-|+.|.+|||.. ....+|+..++=..+-|+++++++...+
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 4466789999999954 5679999999999999999999876543
No 112
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00061 Score=52.02 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCcccC
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVRN 50 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 50 (679)
..++.|.+|++|||+...+.+|+..+| -+.+.|++||+++....
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 357789999999999999999999999 58999999999976543
No 113
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.22 E-value=0.00044 Score=52.35 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 8 RDEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
.+.-|+.|++||| +...+.+|+..++=..+-|+|++++|...
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4667899999999 67888999999999999999999998544
No 114
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.20 E-value=0.00038 Score=50.15 Aligned_cols=39 Identities=31% Similarity=0.513 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcCc
Q 005741 9 DEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGS 47 (679)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (679)
+.-|+.|.+||| +.....+|+..++=..+-|+|++++|.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 457899999999 566789999999999999999999874
No 115
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.00031 Score=52.01 Aligned_cols=43 Identities=16% Similarity=0.433 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
..++.|..|++|||+...+.+|+..++=..+.|++|++++...
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4578899999999999999999999998999999999987544
No 116
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.20 E-value=0.00043 Score=52.74 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
.++.|..|++|||+...+.+|+..+|=..+-|++|++++...
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 467889999999999999999999999999999999987643
No 117
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.13 E-value=0.00027 Score=52.42 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCccc
Q 005741 6 TSRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVR 49 (679)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 49 (679)
...++.|..|++|||+...+.+|+..+| -+.+.|++||+++...
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 3346789999999999999999999996 9999999999997654
No 118
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.11 E-value=0.00057 Score=45.49 Aligned_cols=38 Identities=26% Similarity=0.527 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
..++.|..|++|||+...+.+|+..++=..+.|+++++
T Consensus 3 ~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45778999999999999999999999999999999874
No 119
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.01 E-value=0.00047 Score=51.04 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCcc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSV 48 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 48 (679)
.++.|..|++|||+...+.+|+..+| ...+-|+++|+++..
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 35679999999999999999999999 599999999998753
No 120
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.01 E-value=0.0006 Score=52.76 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=36.7
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcC
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (679)
.++.|..|++|||+...+.+|+..++=..+-|++|++++
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 478899999999999999999999999999999999984
No 121
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00083 Score=52.43 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCcccC
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRN 50 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (679)
..++.|..|++|||+...+.+|+..++-..+.|++|++++....
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 45678999999999999999999999999999999999976543
No 122
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.95 E-value=0.00077 Score=49.81 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=37.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCccc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVR 49 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 49 (679)
....|..|++|||....+.+|+..+| -+.+.|++|++.+...
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 9 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 44578999999999999999999998 5999999999987654
No 123
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.90 E-value=0.0078 Score=62.28 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHh
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.|+|+|+..+..+...+-+++..+-+.|||.+....++ ..+..+++++|++..+..+.+.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 78999999998775556789999999999976543332 2467899999999988877766654
No 124
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.64 E-value=0.0028 Score=46.76 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCch-HHHHHHHHhCCChhhhHHHHhcCcccCC
Q 005741 10 EVIAKLIEMGFDDS-DITEAVETVGPSFNDAIEYILNGSVRNS 51 (679)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (679)
.-|+.|.+|||... ..++|+..++=..+-|||+|+++....+
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCccC
Confidence 36899999999555 5599999999999999999999865533
No 125
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.64 E-value=0.0016 Score=46.16 Aligned_cols=42 Identities=17% Similarity=0.428 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCcc
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (679)
|-.+-|+-|+.|||....+.+|++++|=.++.|+++|..-.+
T Consensus 18 se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 18 SERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 345679999999999999999999999999999999987443
No 126
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.48 E-value=0.00079 Score=46.32 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCc
Q 005741 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGS 47 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (679)
++.|+.|++|||+...+.+|+.+||-..+-|.++++.+.
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 567999999999999999999999999999999998764
No 127
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.46 E-value=0.0032 Score=49.32 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
+..|.+|++|||+...+.+|+.+++=.++.|++||+.....
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999999999986544
No 128
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.39 E-value=0.0049 Score=48.26 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCcccC
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVRN 50 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 50 (679)
..+..|..|++|||....+.+|+..+| -+.+.|++|++.+....
T Consensus 28 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 357899999999999999999999997 79999999999976543
No 129
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.32 E-value=0.0033 Score=43.93 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcCcc
Q 005741 10 EVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGSV 48 (679)
Q Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (679)
..+++|.|||| |...-.+|++..|=++..||+.++.+..
T Consensus 11 ~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 11 ALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 36789999999 9999999999999999999999998653
No 130
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.28 E-value=0.024 Score=62.79 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHh
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.|+|+|+..+..+-..+..++..+-|+|||.+....++ ..+..+++++|+...+.+....++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 58999999998775567899999999999975443222 2456899999999998888877665
No 131
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=96.13 E-value=0.007 Score=41.38 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005741 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
++-|+.|++|||+..++.+|+....=..+=|-.+++
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467999999999999999999999888777666654
No 132
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.12 E-value=0.0049 Score=50.34 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCC-CchHHHHHHHHhCCChhhhHHHHhcCc
Q 005741 8 RDEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGS 47 (679)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (679)
.+.-|+.|.|||| |.....+|+..++=..+-|||+|++|.
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 3678899999999 457999999999999999999999875
No 133
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=96.08 E-value=0.0068 Score=41.65 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILN 45 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (679)
.+.-|+.|++|||+..++.+|+....=..+=|-+.++.
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56789999999999999999999998888777666655
No 134
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.98 E-value=0.0064 Score=63.70 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=54.7
Q ss_pred CEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEEChH
Q 005741 190 DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPE 269 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~ 269 (679)
-.++.++.|+|||....-.+ .....+|++||++++.++.+.+.+.+.. .....-|.|.+
T Consensus 163 v~~I~G~aGsGKTt~I~~~~--~~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------------~~~~~~V~T~d 221 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV--NFEEDLILVPGRQAAEMIRRRANASGII-------------------VATKDNVRTVD 221 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC--CTTTCEEEESCHHHHHHHHHHHTTTSCC-------------------CCCTTTEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHh--ccCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------ccccceEEEeH
Confidence 36789999999997553222 2367899999999999999998654210 01123466777
Q ss_pred HHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005741 270 TVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 270 ~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
+++- . .........++||||||-.+
T Consensus 222 sfL~--~--~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 222 SFLM--N--YGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp HHHH--T--TTSSCCCCCSEEEEETGGGS
T ss_pred Hhhc--C--CCCCCCCcCCEEEEeCcccC
Confidence 5531 1 00001123899999999865
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.96 E-value=0.1 Score=47.60 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHH---------cCCCEEEEeecCCcchhhh
Q 005741 175 KNFQKEALSAWL---------AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 175 ~~~Q~~ai~~~l---------~g~d~iv~a~TGsGKTl~~ 205 (679)
.+.|.+++..+. .|+.+++.+|+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456777766554 3678999999999999654
No 136
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.90 E-value=0.083 Score=46.27 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=17.3
Q ss_pred HcCCCEEEEeecCCcchhhhh
Q 005741 186 LAHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~~ 206 (679)
..+.++++.+|+|+|||..+-
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHG
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 346789999999999997653
No 137
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.88 E-value=0.0079 Score=41.38 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhc
Q 005741 10 EVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILN 45 (679)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (679)
.-|+.|++|||+..++.+|+....=..+-|-+.++.
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 349999999999999999999999998888777764
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.71 E-value=0.023 Score=52.38 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=26.3
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCch
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~ 223 (679)
|+-.++.+|+|+|||...+-.+. ..+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 55578999999999987543222 3678899998874
No 139
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=95.63 E-value=0.016 Score=38.25 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005741 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
+.-|+.|+.|||++.++.+|+....-..+-|-+-++
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ 40 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 566999999999999999999988887777655444
No 140
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.53 E-value=0.022 Score=62.75 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcH
Q 005741 173 SLKNFQKEALSAWLA--HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN 250 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~--g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~ 250 (679)
.+|.-|.+|+..++. ....++.|+-|.|||.+.-+.+..-...++|.+|+.+=+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~--------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGE--------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGG---------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhC---------------
Confidence 689999999998886 234689999999999765555443345679999997755433332211
Q ss_pred HHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCC
Q 005741 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330 (679)
Q Consensus 251 ~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~ 330 (679)
.|-+..|..+. ......+++|||||=.+- -+.+.++. . .
T Consensus 240 -----------~i~~~~Pd~~~---------~~~~~~dlliVDEAAaIp------~pll~~ll---~------------~ 278 (671)
T 2zpa_A 240 -----------KFRFIAPDALL---------ASDEQADWLVVDEAAAIP------APLLHQLV---S------------R 278 (671)
T ss_dssp -----------GCCBCCHHHHH---------HSCCCCSEEEEETGGGSC------HHHHHHHH---T------------T
T ss_pred -----------CeEEeCchhhh---------hCcccCCEEEEEchhcCC------HHHHHHHH---h------------h
Confidence 14455665422 123468999999999883 44544441 1 3
Q ss_pred CCEEEEEccCCh
Q 005741 331 IPLMALTATATI 342 (679)
Q Consensus 331 ~~~l~lSAT~~~ 342 (679)
.+.++||-|...
T Consensus 279 ~~~v~~~tTv~G 290 (671)
T 2zpa_A 279 FPRTLLTTTVQG 290 (671)
T ss_dssp SSEEEEEEEBSS
T ss_pred CCeEEEEecCCc
Confidence 468999999754
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.51 E-value=0.056 Score=47.83 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.3
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.++.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999643
No 142
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=95.51 E-value=0.014 Score=50.09 Aligned_cols=42 Identities=19% Similarity=0.473 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCcc
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (679)
..+..|..|++|||+...+.+|+..+|=..+.|+++++++..
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 457789999999999999999999999999999999998754
No 143
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.36 E-value=0.038 Score=51.16 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCch
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~ 223 (679)
|+=.++.+|+|+|||...+-.+. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44568899999999976654333 3688999999874
No 144
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.044 Score=55.10 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.3
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+.++++.+|+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999754
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.23 Score=47.68 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=32.1
Q ss_pred cCCCEEEEeecCCcchhhhh-hhh--hccCCeEEEEcCchHHHHHHHHHHHhcC
Q 005741 187 AHHDCLVLAATGSGKSLCFQ-IPA--LLTGKVVVVISPLISLMHDQCSKLSKHG 237 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~-lp~--l~~~~~vLvl~Pt~~L~~q~~~~l~~~~ 237 (679)
.|.-+++.+|+|+|||..++ +.. ...+..++++.-... ..+..+.+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcC
Confidence 35678999999999997543 222 235677888765432 455555555544
No 146
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.14 E-value=0.083 Score=53.78 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEeecCCcchhhhh
Q 005741 174 LKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 174 ~~~~Q~~ai~~~l----~g~---d~iv~a~TGsGKTl~~~ 206 (679)
+.|+|.+++..+. +|+ -.++.+|.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4577777765543 343 37999999999997553
No 147
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=95.00 E-value=0.021 Score=47.81 Aligned_cols=39 Identities=15% Similarity=0.509 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhc
Q 005741 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILN 45 (679)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (679)
+--+++..|++|||....+.+|+..+|-+.+.|++||+.
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345789999999999999999999999999999999974
No 148
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.82 E-value=0.026 Score=63.37 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh--h-c----cCCeEEEEcCchHHHHHHHHHHHhc
Q 005741 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA--L-L----TGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~--l-~----~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
..|++-|++|+.. ....++|.|+.|||||.+..--+ + . ...++|++++|+..+.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 3699999999973 35679999999999997543222 2 2 2368999999999999999888764
No 149
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.78 E-value=0.27 Score=50.52 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|.-+++.+++|+|||..++-.+ ...+..++|+..-..+- ++. ...+++.. -+++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~~--a~~~g~d~--------------------~~l~ 130 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PVY--ARALGVNT--------------------DELL 130 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HHH--HHHTTCCG--------------------GGCE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HHH--HHHcCCCH--------------------HHce
Confidence 4568899999999996443222 12456777776543321 111 22233210 1234
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
|..|..+..++..+........+++||||....+.
T Consensus 131 i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 131 VSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred eecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 44443333333333333344679999999999886
No 150
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.78 E-value=0.1 Score=49.04 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.9
Q ss_pred CCEEEEeecCCcchhh
Q 005741 189 HDCLVLAATGSGKSLC 204 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~ 204 (679)
..+++.+|+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3699999999999964
No 151
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.77 E-value=0.11 Score=52.69 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.8
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
+.+++.+|+|+|||..+-.
T Consensus 52 ~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CEEEEECSSSSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999976543
No 152
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.74 E-value=0.021 Score=45.86 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHc-CCCchHHHHHHHHhCCChhhhHHHHhcCcc
Q 005741 7 SRDEVIAKLIEM-GFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (679)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (679)
..++-|..|+|| ||+..++..|+..++=.++.|+++|++|..
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 346789999999 999999999999999999999999999863
No 153
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.74 E-value=0.13 Score=51.98 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.3
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+..+++.+|+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999754
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.73 E-value=0.27 Score=50.16 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=48.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|+-+++.+|.|+|||...+-.+ ...+.+++++.--..+- +. ...++++.. -++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~-~~--~a~~lG~~~--------------------~~l~ 117 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD-PE--YAKKLGVDT--------------------DSLL 117 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HH--HHHHTTCCG--------------------GGCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC-HH--HHHHcCCCH--------------------HHeE
Confidence 4668999999999996543322 23566777776433221 11 122233210 1233
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..|..+..++............++|||||...+.
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 118 VSQPDTGEQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred EecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 33333333333322333334568999999999886
No 155
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.72 E-value=0.16 Score=51.43 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=59.2
Q ss_pred HHHHHHc-----CCCEEEEeecCCcchhhhhhhhh---cc------CCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcC
Q 005741 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQIPAL---LT------GKVVVVISPLISL-MHDQCSKLSKHGVTACFLGS 245 (679)
Q Consensus 181 ai~~~l~-----g~d~iv~a~TGsGKTl~~~lp~l---~~------~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~ 245 (679)
.+..++. |.-+++.+|+|+|||..++-.+. .. +..++++.--..+ ..+..+.+.++++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~----- 169 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI----- 169 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCH-----
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCH-----
Confidence 3555553 46789999999999965433222 22 6788888765433 344444455554321
Q ss_pred CCCcHHHHHHHHcCCccEEEEC---hHHHHHHHHHHHHHHhh-cCceEEEeecccccc
Q 005741 246 GQPDNKVEQKALRGMYSIIYVC---PETVIRLIKPLQRLAES-RGIALFAIDEVHCVS 299 (679)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ili~T---p~~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~ 299 (679)
.. ... ++.+.. .+.+..++..+...+.. .++++||||+...+.
T Consensus 170 ----~~----~~~---~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 170 ----DN----VMN---NIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp ----HH----HHH---TEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ----HH----Hhc---cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 11 111 244433 34443444444444444 689999999999874
No 156
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.70 E-value=0.15 Score=52.12 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=59.0
Q ss_pred HHHHHc-----CCCEEEEeecCCcchhhhhhhhh---c------cCCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCC
Q 005741 182 LSAWLA-----HHDCLVLAATGSGKSLCFQIPAL---L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSG 246 (679)
Q Consensus 182 i~~~l~-----g~d~iv~a~TGsGKTl~~~lp~l---~------~~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~ 246 (679)
+..++. |.-+++.+|+|+|||...+-.+. . .++.++++.-...+ ..+..+.+.++++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~------ 184 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH------ 184 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCH------
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCH------
Confidence 555553 45678999999999965443222 2 36788888765432 334444444544321
Q ss_pred CCcHHHHHHHHcCCccEEEE---ChHHHHHHHHHHHHHHhh--cCceEEEeecccccc
Q 005741 247 QPDNKVEQKALRGMYSIIYV---CPETVIRLIKPLQRLAES--RGIALFAIDEVHCVS 299 (679)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ili~---Tp~~l~~ll~~~~~~~~~--~~~~lvViDEaH~l~ 299 (679)
. ..+. ++.+. +.+.+..++..+...+.- ..+++||||+...+.
T Consensus 185 ---~----~~l~---~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 185 ---D----AVLD---NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp ---H----HHHH---TEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred ---H----HHHh---ceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 1 1111 23333 344444554444444444 689999999999875
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.64 E-value=0.19 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.0
Q ss_pred CCCEEEEeecCCcchhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp 208 (679)
.+.+++.+|+|+|||.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 468999999999999765433
No 158
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.62 E-value=0.07 Score=50.64 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=26.0
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCch
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~ 223 (679)
|.-.++.+++|+|||...+-.+. ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 45578899999999976543332 3677888888764
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.58 E-value=0.23 Score=45.07 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.0
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.+++++.+|+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357899999999999644
No 160
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.57 E-value=0.34 Score=46.33 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=52.5
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---c------cCCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~------~~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+++.+|+|+|||......+. . .+..++++.-...+ ..+..+.+..+++. ... .+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~---------~~~----~~ 90 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS---------GSD----VL 90 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCC---------HHH----HH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCC---------HHH----Hh
Confidence 56789999999999975543332 2 15677777643321 22223333344321 000 11
Q ss_pred cCCccEEEE---ChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 258 RGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 258 ~~~~~Ili~---Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
. ++.+. +.+.+..++..+...+...+.++|||||...+..
T Consensus 91 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 91 D---NVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp H---TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred h---CeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1 22222 3344434444334444456899999999998864
No 161
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.57 E-value=0.026 Score=47.29 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcC
Q 005741 10 EVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (679)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (679)
+.|..|.||||+.+.+.+|+...+=..+-|||+++.+
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4599999999999999999999999999999999875
No 162
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.56 E-value=0.29 Score=49.57 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHHH------H
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQK------A 256 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~------~ 256 (679)
|.=+++.+++|+|||..++-.+ ...+..|+|++.--. ..|...++... ++....+..+.-....+.. .
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4457889999999996443222 236788888875432 34444443221 2211111112222211111 1
Q ss_pred HcCCccEEE-EChH-HHHHHHHHHHHHHhhc-CceEEEeecccccccC------CCCchHHHHHHHHHHHhhcccccccc
Q 005741 257 LRGMYSIIY-VCPE-TVIRLIKPLQRLAESR-GIALFAIDEVHCVSKW------GHDFRPDYRRLSVLRENFGANNLKSL 327 (679)
Q Consensus 257 ~~~~~~Ili-~Tp~-~l~~ll~~~~~~~~~~-~~~lvViDEaH~l~~~------g~~f~~~~~~l~~~~~~~~~~~~~~~ 327 (679)
+.. ..+.| -+|. .+..+........... ++++||||-.+.+... ........+.|..+.+.+
T Consensus 125 l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel-------- 195 (338)
T 4a1f_A 125 LSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL-------- 195 (338)
T ss_dssp HHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH--------
T ss_pred Hhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc--------
Confidence 111 23444 3332 2323333333333334 7999999999988531 122344445555554444
Q ss_pred CCCCCEEEEEcc
Q 005741 328 KFDIPLMALTAT 339 (679)
Q Consensus 328 ~~~~~~l~lSAT 339 (679)
+++++++|-.
T Consensus 196 --~vpVi~lsQl 205 (338)
T 4a1f_A 196 --EIPIIALVQL 205 (338)
T ss_dssp --TSCEEEEEEC
T ss_pred --CCeEEEEEec
Confidence 6788888754
No 163
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.47 E-value=0.036 Score=51.91 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=26.3
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchH
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLIS 224 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~ 224 (679)
|+=.++.+++|+|||...+--+. ..+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 33456899999999976654433 46889999999753
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.38 E-value=0.14 Score=50.69 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.5
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
.+.+++.+|+|+|||..+-.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46799999999999976543
No 165
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.37 E-value=0.23 Score=50.86 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|+-+++.++.|+|||..++-.+ ...+.+++++..-..+-.+. ..++++.. .++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~~~--------------------~~l~ 119 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI--------------------DNLL 119 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCG--------------------GGCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCCCh--------------------hhee
Confidence 4678999999999997554322 23566777777643322221 23333220 1233
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..|.....++..+........+++||||....+.
T Consensus 120 i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 120 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred eeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 33333222222222233334679999999999885
No 166
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.33 E-value=0.12 Score=45.26 Aligned_cols=20 Identities=15% Similarity=0.244 Sum_probs=16.9
Q ss_pred cCCCEEEEeecCCcchhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.++++.+|+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 45789999999999997653
No 167
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.27 E-value=0.034 Score=47.57 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhC-CChhhhHHHHhcCc
Q 005741 9 DEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGS 47 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 47 (679)
++.+..|++|||....+.+|+..+| -+.+.|++|++...
T Consensus 4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHM 43 (126)
T ss_dssp THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 4678999999999999999999997 58999999998754
No 168
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.14 E-value=0.93 Score=47.50 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=64.4
Q ss_pred CEEEEeecCCcchhhhhhhh--h-ccCCeEEEEc--CchHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcCCccE
Q 005741 190 DCLVLAATGSGKSLCFQIPA--L-LTGKVVVVIS--PLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSI 263 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~--l-~~~~~vLvl~--Pt~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I 263 (679)
-+++++++|+|||.+..-.+ + ..+.+++++. |.++-+.++...+.. .++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~---------------- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEK---------------- 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCC----------------
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCC----------------
Confidence 46789999999997654322 2 3566777766 556666666655554 354433222111
Q ss_pred EEEChHHHH-HHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005741 264 IYVCPETVI-RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 264 li~Tp~~l~-~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
.|..+. ..+. .....+.++||||.+=++.. -......+..+..... ++.-++.+.||..+
T Consensus 166 ---dp~~i~~~al~----~a~~~~~DvVIIDTaGrl~~----d~~lm~el~~i~~~~~--------pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 166 ---DAIKLAKEGVD----YFKSKGVDIIIVDTAGRHKE----DKALIEEMKQISNVIH--------PHEVILVIDGTIGQ 226 (443)
T ss_dssp ---CHHHHHHHHHH----HHHHTTCSEEEEECCCCSSC----CHHHHHHHHHHHHHHC--------CSEEEEEEEGGGGG
T ss_pred ---CHHHHHHHHHH----HHHhCCCCEEEEECCCcccc----hHHHHHHHHHHHHhhc--------CceEEEEEeCCCch
Confidence 122211 1122 22234588999998865431 2334444444433322 24447778888765
Q ss_pred hhH
Q 005741 343 QVR 345 (679)
Q Consensus 343 ~~~ 345 (679)
...
T Consensus 227 ~a~ 229 (443)
T 3dm5_A 227 QAY 229 (443)
T ss_dssp GHH
T ss_pred hHH
Confidence 543
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.09 E-value=0.24 Score=49.45 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.7
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++.+|+|+|||.++
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999754
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.07 E-value=0.26 Score=48.34 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.3
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 478999999999997654
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.00 E-value=0.07 Score=51.06 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
++.+++.+|+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999643
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.96 E-value=0.14 Score=53.10 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.6
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
.+++.+|+|+|||....
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997543
No 173
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.92 E-value=0.54 Score=49.28 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=63.6
Q ss_pred CEEEEeecCCcchhhhhhhhh---ccCCeEEEEc--CchHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcCCccE
Q 005741 190 DCLVLAATGSGKSLCFQIPAL---LTGKVVVVIS--PLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSI 263 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~--Pt~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I 263 (679)
-+++++++|+|||.+....+. ..+.+++++. +.+.-+.++...+.. .++.......+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~---------------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQ---------------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCS----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccC----------------
Confidence 467889999999976543322 2566776665 445545555555444 354433222111
Q ss_pred EEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc--cCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCC
Q 005741 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS--KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (679)
Q Consensus 264 li~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~--~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 341 (679)
.|..+. ...-......+.++||||++-++. . -......+..+..... ++.-++.++|+..
T Consensus 163 ---dp~~i~---~~al~~a~~~~~DvvIIDTaGr~~~~~----d~~lm~el~~i~~~~~--------pd~vlLVlDa~~g 224 (433)
T 3kl4_A 163 ---NPIEIA---KKGVDIFVKNKMDIIIVDTAGRHGYGE----ETKLLEEMKEMYDVLK--------PDDVILVIDASIG 224 (433)
T ss_dssp ---CHHHHH---HHHHHHTTTTTCSEEEEEECCCSSSCC----TTHHHHHHHHHHHHHC--------CSEEEEEEEGGGG
T ss_pred ---CHHHHH---HHHHHHHHhcCCCEEEEECCCCccccC----CHHHHHHHHHHHHhhC--------CcceEEEEeCccc
Confidence 122111 100112223578999999997653 2 1223344433333322 2444778888876
Q ss_pred hhhH
Q 005741 342 IQVR 345 (679)
Q Consensus 342 ~~~~ 345 (679)
+...
T Consensus 225 q~a~ 228 (433)
T 3kl4_A 225 QKAY 228 (433)
T ss_dssp GGGH
T ss_pred hHHH
Confidence 5443
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.91 E-value=0.43 Score=44.25 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.+++.+|+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999754
No 175
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.77 E-value=0.038 Score=56.45 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=38.8
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
.++.|..|++|||+...+.+|+.+.+=..+.|+||+++|-..
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 678999999999999999999999999999999999998443
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.74 E-value=0.16 Score=47.91 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCc
Q 005741 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt 222 (679)
|.-+++.+|+|+|||..+...+...+..++++.-.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 45688999999999965543333567778877643
No 177
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.72 E-value=0.064 Score=50.77 Aligned_cols=36 Identities=19% Similarity=0.044 Sum_probs=27.4
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCch
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~ 223 (679)
|+=.++.+++|+|||...+--+. ..+.+++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 55568899999999976654432 4688999998875
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.66 E-value=0.16 Score=48.33 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.6
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999643
No 179
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.61 E-value=0.14 Score=58.10 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-cccCcccccccEEEE
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRIIH 586 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~~~GiDip~v~~VI~ 586 (679)
+.+++|.++++.-+..+++.+.+ .++.+..+||+++..+|...++.+.+|..+|+|+|.. +...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 56999999999988888877765 4789999999999999999999999999999999964 556788889999986
Q ss_pred eCCC
Q 005741 587 YGWP 590 (679)
Q Consensus 587 ~d~p 590 (679)
-...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5544
No 180
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.59 E-value=0.27 Score=45.31 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=26.9
Q ss_pred CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCch
Q 005741 189 HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~ 223 (679)
-.+++..++|.|||.+++-.++ -.|.+|+|+.-.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 4789999999999987764443 4789999995443
No 181
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.53 E-value=0.23 Score=51.29 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=15.8
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
++.+++.+|+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 182
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.53 E-value=0.67 Score=49.08 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hc-cCCeEEEEcCchHHHHHHHHHHHh--cCCceEEEcCCCCcHHHHHH------
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LL-TGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQK------ 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~-~~~~vLvl~Pt~~L~~q~~~~l~~--~~~~~~~~~~~~~~~~~~~~------ 255 (679)
|.-+++.|++|+|||...+-.+ .. .+.+++++..--. ..|...++.. .++....+..+.-....+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 3457899999999996443222 22 3667888775422 2344444321 22221111112222221111
Q ss_pred HHcCCccEEEEC-hH-HHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 256 ALRGMYSIIYVC-PE-TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 256 ~~~~~~~Ili~T-p~-~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
.+.. ..+.+-. |. .+..+...+.......++++||||..+.+..
T Consensus 279 ~l~~-~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 279 RLSE-APIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHT-SCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHhc-CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 1122 2455532 21 2222333333333345799999999999864
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.44 E-value=0.16 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=17.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~ 209 (679)
.+.+++.+|+|+|||..+-..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998654433
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.43 E-value=0.63 Score=42.16 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.7
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.+++.+|+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999654
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.32 E-value=0.68 Score=49.16 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=58.0
Q ss_pred HHHHHH----cCCCEEEEeecCCcchhhhhhhhh---c-cCCeEEEEcCchHHHHHHHHHHH--hcCCceEEEcCCCCcH
Q 005741 181 ALSAWL----AHHDCLVLAATGSGKSLCFQIPAL---L-TGKVVVVISPLISLMHDQCSKLS--KHGVTACFLGSGQPDN 250 (679)
Q Consensus 181 ai~~~l----~g~d~iv~a~TGsGKTl~~~lp~l---~-~~~~vLvl~Pt~~L~~q~~~~l~--~~~~~~~~~~~~~~~~ 250 (679)
.+..++ .|.-+++.+++|+|||...+-.+. . .+..++|+..-.. ..|...++. ..++....+..|....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 455555 345678999999999965443222 2 3557888875432 234444432 1232211111222222
Q ss_pred HHHHH------HHcCCccEEEEChH--HHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 251 KVEQK------ALRGMYSIIYVCPE--TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 251 ~~~~~------~~~~~~~Ili~Tp~--~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
..+.. .+.. .++.+-.+. .+..+...........++++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSN-AGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHHS-SCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 21111 1112 245553221 1222222223333345799999999999864
No 186
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.25 Score=51.10 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.2
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.+|+.+|+|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 3789999999999998653
No 187
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.13 E-value=0.14 Score=47.79 Aligned_cols=37 Identities=24% Similarity=0.096 Sum_probs=25.5
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchH
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLIS 224 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~ 224 (679)
|.=.++.+++|+|||...+--+. ..+.+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 45568899999999975443332 35788899988653
No 188
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.11 E-value=0.21 Score=52.35 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=65.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----cccCcccccccE
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMGIDKLNVRR 583 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~~~GiDip~v~~ 583 (679)
..++||.+|++.-+..+++.+.. .++.+..++|+.+..++....+.+..|..+|+|+|.- +.. ++..++++
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 142 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDF 142 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccE
Confidence 56999999999999999999988 5889999999999999999999999999999999953 222 55667888
Q ss_pred EEEeCC
Q 005741 584 IIHYGW 589 (679)
Q Consensus 584 VI~~d~ 589 (679)
||.=..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 885544
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.06 E-value=0.18 Score=53.45 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.5
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
..+++.+|+|+|||..+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3689999999999976533
No 190
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.01 E-value=0.2 Score=51.76 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.4
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+..+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999754
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.89 E-value=0.29 Score=49.46 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.5
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||+.+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997653
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.88 E-value=0.2 Score=51.45 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.3
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
.+.+++.+|+|+|||+.+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 35799999999999986543
No 193
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.64 E-value=0.25 Score=51.09 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.1
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999997553
No 194
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.64 E-value=0.074 Score=59.91 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh---hc----cCCeEEEEcCchHHHHHHHHHHHhc
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA---LL----TGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~---l~----~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
.|++-|++|+.. .+..++|.|+.|||||.+..--+ +. ....+|+|+.|+..+.++.+++.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 589999999875 25689999999999996543211 11 3468999999999999999888763
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.60 E-value=0.42 Score=48.76 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=49.9
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|.-+++.+|+|+|||...+-.+. ..++.++++..-..+-.. ...++++.. -++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~--------------------~~l~ 117 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDL--------------------KSLL 117 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCG--------------------GGCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCch--------------------hhhh
Confidence 45688999999999964432221 246677777665433222 222333210 1344
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..|..+...+............+++|||.+-.+.
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 44444443433333333444678999999987764
No 196
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.60 E-value=0.12 Score=58.55 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhh-c----cCCeEEEEcCchHHHHHHHHHHHh
Q 005741 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPAL-L----TGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l-~----~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
..|++-|++|+.. ....++|.|..|||||.+.. +.-+ . ....+|+|+.|+..+.++.+++.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3699999999875 35689999999999996543 2222 1 235899999999999888887765
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.57 E-value=0.37 Score=48.60 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCCEEEEeecCCcchhhhh-hhhh--------------ccC----CeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCC
Q 005741 188 HHDCLVLAATGSGKSLCFQ-IPAL--------------LTG----KVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQ 247 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~l--------------~~~----~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~ 247 (679)
|.-+++.+++|+|||..++ +..- ..+ .+++|+.--..+ ..+..+.+.++++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~------- 170 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDG------- 170 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCH-------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCH-------
Confidence 5678999999999996443 2221 123 688888765443 344444455544321
Q ss_pred CcHHHHHHHHcCCccEEEE---ChHHHHHHHHHHHHHHhh-cCceEEEeecccccc
Q 005741 248 PDNKVEQKALRGMYSIIYV---CPETVIRLIKPLQRLAES-RGIALFAIDEVHCVS 299 (679)
Q Consensus 248 ~~~~~~~~~~~~~~~Ili~---Tp~~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~ 299 (679)
. ..+. ++.+. +.+.+..++..+...+.. .++++||||....+.
T Consensus 171 --~----~~~~---~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 217 (322)
T 2i1q_A 171 --Q----TVLD---NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 217 (322)
T ss_dssp --H----HHHH---TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHH
T ss_pred --H----HHhc---CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHH
Confidence 0 1111 23343 334333444444444443 679999999999874
No 198
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.55 E-value=0.25 Score=47.93 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.+++.+|+|+|||..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578999999999997553
No 199
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.55 E-value=0.25 Score=53.55 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=20.3
Q ss_pred CCEEEEeecCCcchhhhhhhhhccCCeEEEE
Q 005741 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl 219 (679)
+.+++.+|+|+|||.++...+-.-+..++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5789999999999976544333233333333
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.44 E-value=0.94 Score=45.41 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHHHc----CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCC-----
Q 005741 181 ALSAWLA----HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSG----- 246 (679)
Q Consensus 181 ai~~~l~----g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~----- 246 (679)
.+..++. |.-+++.+++|+|||..++-.+ ...+..+++++--. -..|...++... ++....+..+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~~~~~i~~~~l~~~~~~l~ 135 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFA 135 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHHHHTTCCHHHHHSCHHHHC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCCC
Confidence 3445443 4568899999999996443222 23567888887442 234444443321 2221111111
Q ss_pred -CCcHHHH--HHHHcCCccEEEEC-hH-HHHHHHHHHHHHHhhcCce--EEEeeccccccc
Q 005741 247 -QPDNKVE--QKALRGMYSIIYVC-PE-TVIRLIKPLQRLAESRGIA--LFAIDEVHCVSK 300 (679)
Q Consensus 247 -~~~~~~~--~~~~~~~~~Ili~T-p~-~l~~ll~~~~~~~~~~~~~--lvViDEaH~l~~ 300 (679)
....... ...+.. ..+.+.. |. .+..+...+........++ +||||-.+.+..
T Consensus 136 ~~~~~~l~~a~~~l~~-~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISN-SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp SSCHHHHHHHHHHHHT-SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 1111100 111212 3455432 21 2223333333333344688 999999998853
No 201
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.42 E-value=0.61 Score=46.66 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.6
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
++++++.+|+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.36 E-value=1.1 Score=47.33 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.2
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
..+++.+|+|+|||..+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997543
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.31 E-value=0.18 Score=52.39 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.+.+|+.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999865
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.31 E-value=0.35 Score=48.04 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.2
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
++.+++.+|+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4689999999999997653
No 205
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.19 E-value=0.44 Score=47.99 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=12.6
Q ss_pred CceEEEeecccccc
Q 005741 286 GIALFAIDEVHCVS 299 (679)
Q Consensus 286 ~~~lvViDEaH~l~ 299 (679)
..++|||||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999985
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.27 Score=51.52 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.+.+|+.+|+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 368999999999999865
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.97 E-value=1.5 Score=41.30 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=23.2
Q ss_pred cCCCEEEEeecCCcchhhhhhhh-h--ccCCeEEEEcC
Q 005741 187 AHHDCLVLAATGSGKSLCFQIPA-L--LTGKVVVVISP 221 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~-l--~~~~~vLvl~P 221 (679)
.|.-+++.+|+|+|||......+ . ..++.++++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 35678899999999996443222 2 24667777653
No 208
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.85 E-value=0.16 Score=61.25 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhh---hhhcc------CCeEEEEcCchHHHHHHHHHHHh
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI---PALLT------GKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~l---p~l~~------~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
++++-|.++|..- +++++|.|..|||||.+.+- -.+.. ..++|+|++|+..+.++.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999998754 78999999999999976432 22222 34899999999999999888876
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.75 E-value=0.79 Score=46.94 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.4
Q ss_pred CCEEEEeecCCcchhhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp 208 (679)
+.+++.+|+|+|||..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999765433
No 210
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.68 E-value=1.2 Score=45.06 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.6
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++.+|+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999754
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.44 Score=49.98 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.1
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.+|+.+|+|+|||+.+-
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3689999999999998653
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.59 E-value=0.51 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCCEEEEeecCCcchhhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~ 209 (679)
++.+++.+|+|+|||+.+-..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHH
Confidence 5679999999999998654333
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.40 E-value=1.8 Score=45.73 Aligned_cols=42 Identities=21% Similarity=0.044 Sum_probs=27.7
Q ss_pred HHHHHHc----CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCc
Q 005741 181 ALSAWLA----HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPL 222 (679)
Q Consensus 181 ai~~~l~----g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt 222 (679)
.+..++. |.-+++.|++|+|||..++-.+ ...+.+++|++--
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3455553 3457899999999996543222 2357788888754
No 214
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.05 E-value=0.45 Score=47.51 Aligned_cols=16 Identities=13% Similarity=-0.176 Sum_probs=13.8
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
..++.+|.|+|||.++
T Consensus 20 ~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 20 SILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999755
No 215
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.01 E-value=0.64 Score=50.26 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.-+++|.+.||||||.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp SCCEEEECCTTSSHHHHH
T ss_pred CCeeEEECCCCCCHHHHH
Confidence 468999999999999653
No 216
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.76 E-value=0.69 Score=46.26 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.9
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
++++.+|.|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999654
No 217
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.76 E-value=0.64 Score=46.59 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.2
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
++++.+|+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999754
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.67 E-value=1.8 Score=41.17 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=30.1
Q ss_pred CCCEEEEeecCCcchhhhh-hhh---hccCCeEEEEcCchHHHHHHHHHHHhc
Q 005741 188 HHDCLVLAATGSGKSLCFQ-IPA---LLTGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
|.-+++.+++|+|||..++ +.+ ...+..++++.-... ..+..+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHc
Confidence 5678999999999995433 322 234667877764422 45555555544
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.64 E-value=3.4 Score=41.00 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCCEEEEeecCCcchhhhhh-hhh--ccCCeEEEEc-C-chHHHHHHH-HHHHhcCCce
Q 005741 188 HHDCLVLAATGSGKSLCFQI-PAL--LTGKVVVVIS-P-LISLMHDQC-SKLSKHGVTA 240 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l-p~l--~~~~~vLvl~-P-t~~L~~q~~-~~l~~~~~~~ 240 (679)
++-+++++++|+|||..... ..+ ..+++++++. . .+.-+.++. ......++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 34567899999999965443 222 2456666554 3 333333333 3334445543
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.63 E-value=0.25 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=17.1
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.+..+++.+|+|+|||..+-.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 357899999999999976543
No 221
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.63 E-value=0.62 Score=48.91 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.+.+|+.+|+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 468999999999999865
No 222
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.58 E-value=2.7 Score=43.54 Aligned_cols=97 Identities=14% Similarity=0.219 Sum_probs=49.9
Q ss_pred CCCEEEEeecCCcchhhhh-hh--hhc------cCCeEEEEcCchHHH-HHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005741 188 HHDCLVLAATGSGKSLCFQ-IP--ALL------TGKVVVVISPLISLM-HDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp--~l~------~~~~vLvl~Pt~~L~-~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+.+.+|.|+|||.... +. .+. .+..++++.-...+- ........++++. .. ..+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~----------~~---~vl 244 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLD----------PD---DAL 244 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCC----------HH---HHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCC----------hH---hHh
Confidence 4568899999999996544 21 122 256788876543221 1122223334431 00 111
Q ss_pred cCCccEEEEC---hHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 258 RGMYSIIYVC---PETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 258 ~~~~~Ili~T---p~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
. +|.+.. .+....++......+...++++|||||.-.+..
T Consensus 245 e---ni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 245 N---NVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp H---TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred h---cEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 1 233332 222223333333344446799999999887754
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.58 E-value=0.78 Score=45.63 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=51.2
Q ss_pred CEEEEeecCCcchhhhhhhh---hcc--CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005741 190 DCLVLAATGSGKSLCFQIPA---LLT--GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~---l~~--~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
-+++.+|.|+|||...+-.+ ... +.+++++..-.++-.. .++++|+. .-+++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd--------------------~d~ll 86 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVD--------------------PERVI 86 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCC--------------------GGGEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCC--------------------HHHeE
Confidence 47899999999996543222 122 6778887765554322 24444432 12456
Q ss_pred EEChHHHHHH-HHHHHHH--HhhcCceEEEeecccccc
Q 005741 265 YVCPETVIRL-IKPLQRL--AESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~l-l~~~~~~--~~~~~~~lvViDEaH~l~ 299 (679)
+..|..+... +...... +.-..+++||||=+..+.
T Consensus 87 v~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 87 HTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred EEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 6655544443 3322222 234578999999999885
No 224
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.50 E-value=0.43 Score=56.59 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=65.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----cccCcccccccE
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMGIDKLNVRR 583 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~~~GiDip~v~~ 583 (679)
+.++||.+|++.-+..+++.+.. .++.+..+||+++..+|...++.+..|..+|+|+|.- +.. ++..++++
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~ 199 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDF 199 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSE
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCE
Confidence 56899999999999999999998 5779999999999999999999999999999999952 222 56678898
Q ss_pred EEEeCC
Q 005741 584 IIHYGW 589 (679)
Q Consensus 584 VI~~d~ 589 (679)
||.=..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 886544
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.31 E-value=1.5 Score=53.65 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|..+++.+|+|+|||..++-.+. ..+.+++|+.--..+ .|.. ....++.. -++.
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~--------------------~~L~ 788 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI--------------------DNLL 788 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG--------------------GGCE
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh--------------------hheE
Confidence 35789999999999964432221 245566666543222 2221 22233210 1345
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
|..+..+..++........-..+++||||+...+.
T Consensus 789 i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 789 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred EecCCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 55555555555544444445689999999999886
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.30 E-value=1 Score=48.16 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.4
Q ss_pred CCEEEEeecCCcchhhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp 208 (679)
+.+++.+|+|+|||+++-..
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 57999999999999866433
No 227
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.30 E-value=0.61 Score=49.34 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.4
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
.+.+++.+|+|+|||+.+-.
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 36799999999999976543
No 228
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.66 Score=48.49 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=15.5
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.+.+|+.+|+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999865
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.77 E-value=2.4 Score=41.97 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh-h-c--cCCeEEEEc
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA-L-L--TGKVVVVIS 220 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~-l-~--~~~~vLvl~ 220 (679)
++-+++++++|+|||.+....+ . . .|.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567889999999997554322 2 2 354666554
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.64 E-value=1.3 Score=42.24 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=23.3
Q ss_pred cCCCEEEEeecCCcchhhhhhhh---h-ccCCeEEEEcC
Q 005741 187 AHHDCLVLAATGSGKSLCFQIPA---L-LTGKVVVVISP 221 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~---l-~~~~~vLvl~P 221 (679)
.|.-+.+.+|+|+|||......+ + ..+..++++.-
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 46778999999999997544322 2 34555555543
No 231
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.55 E-value=0.87 Score=56.52 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=56.2
Q ss_pred HHHHHc------CCCEEEEeecCCcchhhhhh---hhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH
Q 005741 182 LSAWLA------HHDCLVLAATGSGKSLCFQI---PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV 252 (679)
Q Consensus 182 i~~~l~------g~d~iv~a~TGsGKTl~~~l---p~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 252 (679)
+..++. ++++++.+|+|+|||..+.- .+...+.+++|+..--.+.... ++++|+..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 556665 67899999999999975432 2234678888888764332222 334432200
Q ss_pred HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 253 EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 253 ~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
.+.|..|.....++...........+++|||||..-+.
T Consensus 1481 ---------~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 ---------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ---------TCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------hceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 12333343323333333444455689999999997554
No 232
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.36 E-value=0.98 Score=48.11 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=58.3
Q ss_pred CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcC-CceEEEcCCC---------CcHHH-----
Q 005741 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG-VTACFLGSGQ---------PDNKV----- 252 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~-~~~~~~~~~~---------~~~~~----- 252 (679)
+....+.+-||||||++..-.+-..++.+|||+|+...+.|+++.|+.+. .. +...-.. +....
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHHHHH
Confidence 55678999999999986544444457789999999999999999999873 33 3322111 11111
Q ss_pred --HHHHHcCCccEEEEChHHHHHH
Q 005741 253 --EQKALRGMYSIIYVCPETVIRL 274 (679)
Q Consensus 253 --~~~~~~~~~~Ili~Tp~~l~~l 274 (679)
...+..+...|||+|...+...
T Consensus 93 ~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHhCCCCEEEEEHHHHhhc
Confidence 1233345567999999887643
No 233
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.28 E-value=1.9 Score=40.35 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----c-ccCccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----F-GMGIDKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~-~~GiDip~ 580 (679)
..++||.++++.-+..+++.+... +..+..++|+.+..++.. .+..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 448999999999999998888764 788999999998765543 345567799999942 1 23467788
Q ss_pred ccEEEEeCC
Q 005741 581 VRRIIHYGW 589 (679)
Q Consensus 581 v~~VI~~d~ 589 (679)
+++||.-..
T Consensus 159 ~~~lViDEa 167 (220)
T 1t6n_A 159 IKHFILDEC 167 (220)
T ss_dssp CCEEEEESH
T ss_pred CCEEEEcCH
Confidence 888886543
No 234
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.21 E-value=0.83 Score=46.81 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.6
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.+|.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.20 E-value=0.25 Score=49.16 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.3
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.+++.+|+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999754
No 236
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.06 E-value=0.58 Score=47.41 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
.++++.+|+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999997553
No 237
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.81 E-value=2.2 Score=43.37 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=26.4
Q ss_pred HHHHHHc-----CCCEEEEeecCCcchhhhhh-hhhc--c------CCeEEEEcCc
Q 005741 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQI-PALL--T------GKVVVVISPL 222 (679)
Q Consensus 181 ai~~~l~-----g~d~iv~a~TGsGKTl~~~l-p~l~--~------~~~vLvl~Pt 222 (679)
.+..++. |.-+.+.+|.|+|||..... .... + ++.++++.-.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 3555553 45678999999999965433 2222 1 3677777543
No 238
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.74 E-value=1.1 Score=46.49 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=12.9
Q ss_pred cCceEEEeeccccccc
Q 005741 285 RGIALFAIDEVHCVSK 300 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~ 300 (679)
..-.+|||||+|.+..
T Consensus 137 ~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLS 152 (412)
T ss_dssp TCEEEEEEESTHHHHS
T ss_pred CCeEEEEEeCHHHHhh
Confidence 3467899999999864
No 239
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.26 E-value=2.9 Score=52.02 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=55.2
Q ss_pred HHHHHHc------CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHH
Q 005741 181 ALSAWLA------HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK 251 (679)
Q Consensus 181 ai~~~l~------g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 251 (679)
.+..++. |.-+++.+|+|+|||..++-.+. ..+..++|+.--.++-. .. .+.+++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~-~~--a~~lGvd------------ 434 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP-IY--ARKLGVD------------ 434 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH-HH--HHHTTCC------------
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH-HH--HHHcCCC------------
Confidence 4566664 35678999999999965432222 24556776664433221 11 2233321
Q ss_pred HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 252 ~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
.-+++|..|..+..++...........+++||||....+.
T Consensus 435 --------~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 435 --------IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp --------TTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred --------HHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 0134455554444444444444445679999999999886
No 240
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.01 E-value=1.3 Score=44.92 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.2
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
++++.+|.|+|||..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999997553
No 241
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.65 E-value=3 Score=44.80 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=53.6
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hcc-CCeEEEEcCchHHHHHHHHHHHh--cCCceEE---EcCCC---Cc-HHHHH
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LLT-GKVVVVISPLISLMHDQCSKLSK--HGVTACF---LGSGQ---PD-NKVEQ 254 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~-~~~vLvl~Pt~~L~~q~~~~l~~--~~~~~~~---~~~~~---~~-~~~~~ 254 (679)
|.-+++.+++|+|||...+-.+ ... +.++++++---. ..|...++.. .++.... +..+. .. .....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 4567899999999996543222 223 668888875322 3455444422 2222100 00000 00 00001
Q ss_pred HHHcCCccEEEE-Ch--HHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 255 KALRGMYSIIYV-CP--ETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 255 ~~~~~~~~Ili~-Tp--~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
..+.. ..+.|. +| ..+..++..........++++||||=.+.+.
T Consensus 321 ~~~~~-~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~ 367 (503)
T 1q57_A 321 ELFGN-DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVV 367 (503)
T ss_dssp HHHTT-TCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCC
T ss_pred HHhcc-CCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcC
Confidence 11112 234444 33 2333444443444444579999999888774
No 242
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.45 E-value=1.1 Score=53.31 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-ccccCcccccccEEEE
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-AFGMGIDKLNVRRIIH 586 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-~~~~GiDip~v~~VI~ 586 (679)
+.+++|.|+|+.-+...++.+.+ .++.+..+++..+..++..+++.+..|..+|+|+|. .+...+.+.++++||.
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 56999999999999888888775 367899999999999999999999999999999994 5666688888988885
Q ss_pred eC
Q 005741 587 YG 588 (679)
Q Consensus 587 ~d 588 (679)
=.
T Consensus 732 DE 733 (1151)
T 2eyq_A 732 DE 733 (1151)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 243
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.24 E-value=0.77 Score=45.78 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
...+++.+|+|+|||.++-
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 5689999999999997653
No 244
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.97 E-value=2.3 Score=40.09 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=57.4
Q ss_pred hhccCCCCCCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----c-
Q 005741 504 SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----F- 572 (679)
Q Consensus 504 ~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~- 572 (679)
..+.......++||.++++.-+..+++.+... ++.+..++|+.+..++...+ ...+|+|+|.- +
T Consensus 84 ~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~ 158 (230)
T 2oxc_A 84 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIE 158 (230)
T ss_dssp HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHH
T ss_pred HHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHh
Confidence 33333334569999999999999999988763 67889999999877655443 35789999952 1
Q ss_pred ccCcccccccEEEEeC
Q 005741 573 GMGIDKLNVRRIIHYG 588 (679)
Q Consensus 573 ~~GiDip~v~~VI~~d 588 (679)
...+++.++++||.=.
T Consensus 159 ~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 159 LDYLNPGSIRLFILDE 174 (230)
T ss_dssp TTSSCGGGCCEEEESS
T ss_pred cCCcccccCCEEEeCC
Confidence 2346677888877533
No 245
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.94 E-value=5.1 Score=39.40 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=23.2
Q ss_pred cCCCEEEEeecCCcchhhhhhhh-h-c-c-CCeEEEEcC
Q 005741 187 AHHDCLVLAATGSGKSLCFQIPA-L-L-T-GKVVVVISP 221 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~-l-~-~-~~~vLvl~P 221 (679)
.|.-+++.+|+|+|||......+ . . . +..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46678899999999996543322 2 1 2 447777654
No 246
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.94 E-value=1 Score=44.89 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.6
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
.+++.+|+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997553
No 247
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.91 E-value=1.6 Score=40.09 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=24.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCc
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPL 222 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt 222 (679)
|+=.++.+|+|+|||.-.+-.+ ...+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 5567899999999995332222 2356788888776
No 248
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.64 E-value=7.9 Score=38.73 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHH-cCCCEEEEeecCCcchhhh
Q 005741 175 KNFQKEALSAWL-AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 175 ~~~Q~~ai~~~l-~g~d~iv~a~TGsGKTl~~ 205 (679)
|.-+.+.+..++ .++.++|.+|.|+|||...
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHH
Confidence 444444444444 3678899999999999643
No 249
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.54 E-value=2.7 Score=39.44 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCCEEEEeecCCcchhhhhhhhh--c-------cCCeEEEEcCc
Q 005741 188 HHDCLVLAATGSGKSLCFQIPAL--L-------TGKVVVVISPL 222 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l--~-------~~~~vLvl~Pt 222 (679)
|.-+.+.+|+|+|||......+- . ....++++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 55688999999999965443321 2 14557776654
No 250
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.51 E-value=1.4 Score=46.91 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=15.3
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998653
No 251
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.33 E-value=2.8 Score=40.15 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=55.2
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----cc--cCcccc
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FG--MGIDKL 579 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~~--~GiDip 579 (679)
...++||.++++.-+..+++.+... ++.+..++|+.+..++...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3458999999999999888877664 78899999998876554433 246799999942 22 457788
Q ss_pred cccEEEEeC
Q 005741 580 NVRRIIHYG 588 (679)
Q Consensus 580 ~v~~VI~~d 588 (679)
.+++||.-.
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 888888544
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.12 E-value=6.3 Score=48.34 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=54.4
Q ss_pred HHHHHHc------CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHH
Q 005741 181 ALSAWLA------HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK 251 (679)
Q Consensus 181 ai~~~l~------g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 251 (679)
.+..++. |+-+++.+|+|+|||..++-.+ ...+.+++|+.---++-... +..+++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~---a~~lGvd~----------- 435 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI----------- 435 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCG-----------
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH---HHHcCCCH-----------
Confidence 4666674 4568999999999996443222 23566777776543332211 23333221
Q ss_pred HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005741 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 252 ~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
.++.+..|.....++...........+++||||....+.
T Consensus 436 ---------~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 436 ---------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---------HHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 123334443333333333334445679999999999885
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.98 E-value=3.8 Score=39.98 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHcCCCEEEEeecCCcchhhhh
Q 005741 185 WLAHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~~ 206 (679)
+..|.-+++.+|+|+|||..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 3457788999999999996544
No 254
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.59 E-value=2.3 Score=40.38 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=49.9
Q ss_pred hccCCCCCCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc-
Q 005741 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM- 574 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~- 574 (679)
.+.......++||.++++..+..+++.+... +..+..++|+..... ..+.+..+..+|+|+|. .+..
T Consensus 91 ~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~ 167 (237)
T 3bor_A 91 QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRR 167 (237)
T ss_dssp HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTT
T ss_pred HHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhC
Confidence 3333334569999999999999999988764 567778888765432 33455667789999993 3333
Q ss_pred CcccccccEEEEeC
Q 005741 575 GIDKLNVRRIIHYG 588 (679)
Q Consensus 575 GiDip~v~~VI~~d 588 (679)
.+++..+++||.=.
T Consensus 168 ~~~~~~~~~lViDE 181 (237)
T 3bor_A 168 YLSPKWIKMFVLDE 181 (237)
T ss_dssp SSCSTTCCEEEEES
T ss_pred CcCcccCcEEEECC
Confidence 36677788887544
No 255
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.56 E-value=1.7 Score=46.97 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~ 570 (679)
.+++||.++++.-+....+.|...|+.+..+|++.+..++..+...+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999999999999999999999994
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.47 E-value=1.5 Score=49.56 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.6
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+|+.+|.|+|||+.+-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998653
No 257
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.34 E-value=1.7 Score=47.78 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=54.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH--hCCCeeEEEEec
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF--HENKLEVVVATI 570 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F--~~g~~~vLVaT~ 570 (679)
.+++||.+|++.-+....+.|...|+.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 57999999999999999999999999999999999999999999888 578999999997
No 258
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.29 E-value=1.8 Score=43.12 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.6
Q ss_pred cCCCEEEEeecCCcchhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.-+++.+|+|+|||..++
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35567999999999996443
No 259
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.79 E-value=3.9 Score=37.55 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc-Ccccc
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GIDKL 579 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~-GiDip 579 (679)
...++||.++++.-+..+++.+... +..+..++|+.+..+.... + .+..+|+|+|. .+.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3558999999999999988888653 6788999999886554322 2 35678999995 2222 34566
Q ss_pred cccEEEEeC
Q 005741 580 NVRRIIHYG 588 (679)
Q Consensus 580 ~v~~VI~~d 588 (679)
++++||.=.
T Consensus 146 ~~~~lViDE 154 (206)
T 1vec_A 146 HVQMIVLDE 154 (206)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 778777533
No 260
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.67 E-value=1.8 Score=49.47 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.0
Q ss_pred CCCEEEEeecCCcchhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp 208 (679)
++.+++++|+|+|||+.+-..
T Consensus 238 ~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 567999999999999765433
No 261
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.66 E-value=4.3 Score=41.51 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=58.8
Q ss_pred hccCCCCCCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-c-----c
Q 005741 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-F-----G 573 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~-----~ 573 (679)
.+.......++||.|+++.-+..+++.+... ++.+..++|+.+..++... +..+..+|+|+|.- + .
T Consensus 69 ~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~ 145 (391)
T 1xti_A 69 QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARN 145 (391)
T ss_dssp HCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHT
T ss_pred hhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHc
Confidence 3333333559999999999999998888764 7889999999987665443 45577899999942 1 2
Q ss_pred cCcccccccEEEEeC
Q 005741 574 MGIDKLNVRRIIHYG 588 (679)
Q Consensus 574 ~GiDip~v~~VI~~d 588 (679)
..+++.++++||.-.
T Consensus 146 ~~~~~~~~~~vViDE 160 (391)
T 1xti_A 146 KSLNLKHIKHFILDE 160 (391)
T ss_dssp TSSCCTTCSEEEECS
T ss_pred CCccccccCEEEEeC
Confidence 345677888888543
No 262
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.29 E-value=3.7 Score=39.02 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccc-cCcccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFG-MGIDKLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~-~GiDip~v 581 (679)
..++||.++++.-+..+++.+.. .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45899999999999888877765 48899999999988766555432 478999994 222 24577888
Q ss_pred cEEEEeC
Q 005741 582 RRIIHYG 588 (679)
Q Consensus 582 ~~VI~~d 588 (679)
++||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8887544
No 263
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.08 E-value=9.2 Score=38.30 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=30.3
Q ss_pred cCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHH
Q 005741 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDI 348 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i 348 (679)
.+.+++++|.+-+.... ......+..+...+ .++.+++.+.+|........+
T Consensus 210 ~~~d~vliDtaG~~~~~----~~l~~eL~~i~ral--------~~de~llvLDa~t~~~~~~~~ 261 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETN----RNLMDEMKKIARVT--------KPNLVIFVGDALAGNAIVEQA 261 (328)
T ss_dssp HTCSEEEEEECCSCCTT----TCHHHHHHHHHHHH--------CCSEEEEEEEGGGTTHHHHHH
T ss_pred ccchhhHHhhccchhHH----HHHHHHHHHHHHHh--------cCCCCEEEEecHHHHHHHHHH
Confidence 35788899998765321 22333333333222 236678899998876655443
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.00 E-value=12 Score=39.61 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=21.2
Q ss_pred CEEEEeecCCcchhhhhhhh-hc--cCCeEEEE-cCc
Q 005741 190 DCLVLAATGSGKSLCFQIPA-LL--TGKVVVVI-SPL 222 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~-l~--~~~~vLvl-~Pt 222 (679)
-+.+++++|+|||...-..+ +. .++.+++. ..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 36789999999997543322 22 46677765 444
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.56 E-value=4.5 Score=46.61 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++++|+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999754
No 266
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.55 E-value=2.2 Score=48.45 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+.++++++|+|+|||.++
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999754
No 267
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.29 E-value=19 Score=35.27 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCCEEEEeecCCcchhhhh-hhhh--ccCCeEEEEc
Q 005741 188 HHDCLVLAATGSGKSLCFQ-IPAL--LTGKVVVVIS 220 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~l--~~~~~vLvl~ 220 (679)
++-+.++++.|+|||.... +..+ ..+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4456678999999996543 3322 2466666654
No 268
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.02 E-value=3.1 Score=37.77 Aligned_cols=73 Identities=8% Similarity=0.029 Sum_probs=49.0
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.++||.++++.-+......|...++.+..++++.+... .......+..+|+|+|. .+ ...+++..++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-------~~Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA-------ARGLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC--------------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh-------hcCCCcccCC
Confidence 4678999999999999999999999999988888765432 23344456789999993 22 2334567788
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 269
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=81.91 E-value=5.4 Score=36.38 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=54.5
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+...+..|...++.+..++++....... .....+..+|+|+|.- + ...+++.+++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-~-------~~Gldi~~v~ 124 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-A-------SKGLDFPAIQ 124 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-H-------HTTCCCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-h-------hcCCCcccCC
Confidence 467899999999999999999999999999988876654322 2334567899999932 1 2234566788
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 270
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.36 E-value=4.7 Score=40.53 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHcCCCEEEEeecCCcchhhh
Q 005741 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 175 ~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
|.-+.+.+.. +....++|.+|.|+|||...
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 3444444444 43357899999999999643
No 271
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=81.18 E-value=4.5 Score=36.20 Aligned_cols=73 Identities=8% Similarity=0.048 Sum_probs=54.3
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++..+...+..|.+.++.+..++++.+..... .....+..+|+|+|.- + ...+++..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-~-------~~Gid~~~~~ 104 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-C-------ARGIDVKQVT 104 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-C-------CTTTCCTTEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-h-------hcCCCcccCC
Confidence 467899999999999999999999999999888877654322 2334567899999942 1 2234566788
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 272
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=80.12 E-value=2.5 Score=30.62 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=30.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHh---C--CChhhhHHHHhc
Q 005741 8 RDEVIAKLIEMGFDDSDITEAVETV---G--PSFNDAIEYILN 45 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~ 45 (679)
.+++++-|+.+||...++.+||+.+ . .+.++.+...+.
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988 2 355666665553
No 273
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=80.06 E-value=4.7 Score=35.60 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=54.1
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+....+.|...++.+..++++...... ......+..+|+|+|.- + ...+++.+++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-------~~Gld~~~~~ 105 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-A-------ARGIDIENIS 105 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-G-------TTTCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-h-------hcCCchhcCC
Confidence 46789999999999999999999999999999887665432 22334567889999932 2 1233456677
Q ss_pred EEEee
Q 005741 289 LFAID 293 (679)
Q Consensus 289 lvViD 293 (679)
+||.-
T Consensus 106 ~Vi~~ 110 (163)
T 2hjv_A 106 LVINY 110 (163)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77763
No 274
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.89 E-value=3.6 Score=38.86 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=50.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----ccc--Cccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGM--GIDKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~~~--GiDip~ 580 (679)
..++||.++++.-+..+++.+... ++.+..++|+.+..+....+ +..+|+|+|.- +.. .++..+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999999888764 47889999988755443333 46789999942 222 366677
Q ss_pred ccEEEEeC
Q 005741 581 VRRIIHYG 588 (679)
Q Consensus 581 v~~VI~~d 588 (679)
+++||.-.
T Consensus 172 ~~~lViDE 179 (236)
T 2pl3_A 172 LQMLVLDE 179 (236)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88877543
No 275
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.85 E-value=3.2 Score=38.75 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred hhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc------c
Q 005741 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA------F 572 (679)
Q Consensus 503 l~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~------~ 572 (679)
+..+.......++||.++++..+..+++.+.. .++.+..++|+.+..++... +. ..+|+|+|.- .
T Consensus 73 l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~ 147 (224)
T 1qde_A 73 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQ 147 (224)
T ss_dssp HHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHH
T ss_pred HHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHH
Confidence 33444434456999999999999998888775 36788999998765544332 22 3789999952 1
Q ss_pred ccCcccccccEEEEeC
Q 005741 573 GMGIDKLNVRRIIHYG 588 (679)
Q Consensus 573 ~~GiDip~v~~VI~~d 588 (679)
...+++..+++||.=.
T Consensus 148 ~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 148 RRRFRTDKIKMFILDE 163 (224)
T ss_dssp TTSSCCTTCCEEEEET
T ss_pred hCCcchhhCcEEEEcC
Confidence 3356677788887544
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.47 E-value=27 Score=36.23 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=29.7
Q ss_pred CCEEEEeecCCcchhhhhhhh-h--ccCCeEEEEc--CchHHHHHHHHHHHh-cCCce
Q 005741 189 HDCLVLAATGSGKSLCFQIPA-L--LTGKVVVVIS--PLISLMHDQCSKLSK-HGVTA 240 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~-l--~~~~~vLvl~--Pt~~L~~q~~~~l~~-~~~~~ 240 (679)
+-++++++.|+|||.+....+ . ..+++++++. +.+..+.++...+.. .++.+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 346678999999997554333 2 2466666655 445555544444332 34443
No 277
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.32 E-value=5.9 Score=36.26 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=53.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccc-cCcccccccE
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFG-MGIDKLNVRR 583 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~-~GiDip~v~~ 583 (679)
..++||.++++..+..+++.+... .+.+..++|+.+...+...+. ...+|+|+|. .+. ..+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999999999875 467888999887654443332 2578999994 222 2466778888
Q ss_pred EEEeC
Q 005741 584 IIHYG 588 (679)
Q Consensus 584 VI~~d 588 (679)
||.=.
T Consensus 148 iViDE 152 (207)
T 2gxq_A 148 AVLDE 152 (207)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88644
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.16 E-value=7 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=16.6
Q ss_pred CCEEEEeecCCcchhhhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~ 209 (679)
+.+|+.+|.|+|||+.+-..+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHH
Confidence 578999999999998654333
No 279
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=77.49 E-value=2.9 Score=39.02 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=54.0
Q ss_pred hhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----
Q 005741 504 SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI----- 570 (679)
Q Consensus 504 ~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~----- 570 (679)
..+.......++||.++++.-+..+++.+.+. ++.+..++|+.+..++.. .+ ....+|+|+|.
T Consensus 64 ~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~ 139 (219)
T 1q0u_A 64 EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRIND 139 (219)
T ss_dssp HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHH
T ss_pred HHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHH
Confidence 33333334568999999999999988877653 678888999875443211 11 24678999994
Q ss_pred cccc-CcccccccEEEEeC
Q 005741 571 AFGM-GIDKLNVRRIIHYG 588 (679)
Q Consensus 571 ~~~~-GiDip~v~~VI~~d 588 (679)
.+.. .+++..+++||.-.
T Consensus 140 ~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 140 FIREQALDVHTAHILVVDE 158 (219)
T ss_dssp HHHTTCCCGGGCCEEEECS
T ss_pred HHHcCCCCcCcceEEEEcC
Confidence 2223 45677888877543
No 280
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=77.49 E-value=5.6 Score=35.14 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=53.5
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+...+..|...++.+..++++.+.... ......+..+|+|+|.- + ...+++.+++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-------~~G~d~~~~~ 100 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-L-------ARGIDVQQVS 100 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-G-------TTTCCCCSCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-h-------hcCCCcccCC
Confidence 56889999999999999999999999999888887665432 22334567889999932 1 1233456677
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 101 ~Vi~ 104 (165)
T 1fuk_A 101 LVIN 104 (165)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 281
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.43 E-value=2.3 Score=38.05 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=11.8
Q ss_pred CEEEEeecCCcchh
Q 005741 190 DCLVLAATGSGKSL 203 (679)
Q Consensus 190 d~iv~a~TGsGKTl 203 (679)
-+.+.++.|+|||.
T Consensus 6 ~i~i~G~sGsGKTT 19 (169)
T 1xjc_A 6 VWQVVGYKHSGKTT 19 (169)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999995
No 282
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.33 E-value=6.3 Score=35.17 Aligned_cols=90 Identities=11% Similarity=-0.001 Sum_probs=61.0
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.++||.++++.-+...+..|...++.+..++++.+.... ......+...|+|+|.- + ...+++..++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-------~~Gldi~~~~ 101 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-F-------GRGMDIERVN 101 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-C-------STTCCGGGCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-h-------hcCcchhhCC
Confidence 46789999999999999999999999999888887665432 22334567899999942 2 1233456677
Q ss_pred EEEeecccccccCCCCchHHHHHHHHH
Q 005741 289 LFAIDEVHCVSKWGHDFRPDYRRLSVL 315 (679)
Q Consensus 289 lvViDEaH~l~~~g~~f~~~~~~l~~~ 315 (679)
+||.=+.. |. ....+.++++.
T Consensus 102 ~Vi~~d~p----~~--~~~~~qr~GR~ 122 (172)
T 1t5i_A 102 IAFNYDMP----ED--SDTYLHRVARA 122 (172)
T ss_dssp EEEESSCC----SS--HHHHHHHHHHH
T ss_pred EEEEECCC----CC--HHHHHHHhccc
Confidence 77763322 22 34445555544
No 283
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=77.25 E-value=8.4 Score=36.14 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.3
Q ss_pred CC-CEEEEeecCCcchhhhh
Q 005741 188 HH-DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~-d~iv~a~TGsGKTl~~~ 206 (679)
|+ ++++.++.|.|||.+++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHH
Confidence 44 68889999999997654
No 284
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=77.21 E-value=4.7 Score=41.09 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.1
Q ss_pred CCCEEEEeecCCcchhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp 208 (679)
..++++.+|+|+|||.++-..
T Consensus 51 ~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 468999999999999866433
No 285
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.52 E-value=3.9 Score=47.12 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=14.0
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.+|||+|||.++
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999755
No 286
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.39 E-value=7.6 Score=41.43 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=52.3
Q ss_pred CEEEEeecCCcchhhhhhhhh---ccCCeEEEEcC--chHHHHHHHHHH-HhcCCceEEEcCCCCcHHH----HHHHHcC
Q 005741 190 DCLVLAATGSGKSLCFQIPAL---LTGKVVVVISP--LISLMHDQCSKL-SKHGVTACFLGSGQPDNKV----EQKALRG 259 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~P--t~~L~~q~~~~l-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 259 (679)
.+++++++|+|||.++.-.+. ..+.+++++.. .++.+.+|...+ .+.++.+.....+...... .......
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~ 182 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHC
Confidence 467889999999976543332 24667777664 345554444433 3345654443222221111 1111113
Q ss_pred Ccc-EEEEChHHHH---HHHHHHHHHHh--hcCceEEEeecc
Q 005741 260 MYS-IIYVCPETVI---RLIKPLQRLAE--SRGIALFAIDEV 295 (679)
Q Consensus 260 ~~~-Ili~Tp~~l~---~ll~~~~~~~~--~~~~~lvViDEa 295 (679)
.++ |+|=||+.+. .+...+..... ..+..++|+|=.
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~ 224 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDAS 224 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETT
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecc
Confidence 444 6666887653 22222222111 234456777743
No 287
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.35 E-value=4.3 Score=38.06 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec------ccccCccccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI------AFGMGIDKLNVR 582 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~------~~~~GiDip~v~ 582 (679)
..++||.++++.-+..+++.+.. .++.+..++|+.+..++...+ .. ..+|+|+|. .....+++.+++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK-GVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-CCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCcCcccce
Confidence 56899999999999999998887 477888899887755443332 33 478999994 123356678888
Q ss_pred EEEEeC
Q 005741 583 RIIHYG 588 (679)
Q Consensus 583 ~VI~~d 588 (679)
+||.-.
T Consensus 170 ~lViDE 175 (228)
T 3iuy_A 170 YLVIDE 175 (228)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 887544
No 288
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=76.26 E-value=1.6 Score=45.90 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=31.5
Q ss_pred CCCEEEEeecCCcchhhh--hhhhh-ccCCeEEEEcCchHHHH
Q 005741 188 HHDCLVLAATGSGKSLCF--QIPAL-LTGKVVVVISPLISLMH 227 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~--~lp~l-~~~~~vLvl~Pt~~L~~ 227 (679)
..++++.++||+|||... +++.+ ..+..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 578999999999999865 34433 36788999999888864
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.15 E-value=2.3 Score=39.58 Aligned_cols=35 Identities=23% Similarity=0.087 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhh
Q 005741 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
+..-+.-|..++..+..|.-+.+.+|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33344567778888888998999999999999644
No 290
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=75.68 E-value=6.5 Score=36.48 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=54.9
Q ss_pred ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCc
Q 005741 211 LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287 (679)
Q Consensus 211 ~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~ 287 (679)
..++++||.++++.-+....+.|.+.++.+..++++.+..... .....+..+|+|+|.- + ...+++.++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~---~~Gidi~~v 100 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----A---ARGLDIPQV 100 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----T---TCSSSCCCB
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----h---hcCCCCccC
Confidence 3578999999999999999999999999999998887654322 2334567899999942 1 223455677
Q ss_pred eEEEe
Q 005741 288 ALFAI 292 (679)
Q Consensus 288 ~lvVi 292 (679)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77773
No 291
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.51 E-value=3.4 Score=44.34 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHH-HcCCCEEEEeecCCcchhh
Q 005741 173 SLKNFQKEALSAW-LAHHDCLVLAATGSGKSLC 204 (679)
Q Consensus 173 ~~~~~Q~~ai~~~-l~g~d~iv~a~TGsGKTl~ 204 (679)
.+.+.+..-+... ..|..+++++|||||||..
T Consensus 244 ~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3556666666554 4678899999999999964
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.69 E-value=27 Score=36.33 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=26.1
Q ss_pred CEEEEeecCCcchhhhhhhhh---cc-CCeEEEEc--CchHHHHHHHH
Q 005741 190 DCLVLAATGSGKSLCFQIPAL---LT-GKVVVVIS--PLISLMHDQCS 231 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l---~~-~~~vLvl~--Pt~~L~~q~~~ 231 (679)
.++++++.|+|||.+..-.+. .. +.+++++. |.+..+.++..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 567789999999976543332 24 67777765 44544444433
No 293
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=73.64 E-value=11 Score=36.16 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=53.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec------cc-ccCccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI------AF-GMGIDKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~------~~-~~GiDip~ 580 (679)
..++||.++++.-+..+++.+.+ .+..+..+.|+.....+... +..+ .+|+|+|. +. ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 55899999999999999888876 36678888998876554433 3334 78999993 22 22477888
Q ss_pred ccEEEEeC
Q 005741 581 VRRIIHYG 588 (679)
Q Consensus 581 v~~VI~~d 588 (679)
+++||.-.
T Consensus 202 l~~lViDE 209 (262)
T 3ly5_A 202 LQCLVIDE 209 (262)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 88888543
No 294
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.38 E-value=32 Score=33.85 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCCEEEEeecCCcchhhhhhhh-hc--cCCeEEEEc
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA-LL--TGKVVVVIS 220 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~-l~--~~~~vLvl~ 220 (679)
+.-+.+++|+|+|||...-..+ +. .++++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567789999999996543322 22 355555543
No 295
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.65 E-value=10 Score=35.98 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----c-ccCcccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----F-GMGIDKLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~-~~GiDip~v 581 (679)
..++||.++++.-+..+++.+.. .++.+..++|+.+..++...+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 45899999999999998888765 357788889988765443322 346789999952 2 223577788
Q ss_pred cEEEEeC
Q 005741 582 RRIIHYG 588 (679)
Q Consensus 582 ~~VI~~d 588 (679)
++||.-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8888544
No 296
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=72.59 E-value=4.4 Score=33.00 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=35.7
Q ss_pred hhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCC
Q 005741 504 SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 504 ~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
+.+.+.....+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 47 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 47 EKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33333334568999999988899999999999999999999874
No 297
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.97 E-value=14 Score=37.67 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=56.9
Q ss_pred hhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----c-
Q 005741 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----F- 572 (679)
Q Consensus 503 l~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~- 572 (679)
+..+.......++||.++++.-+..+++.+.. .++.+..++|+.+..++...+. ..+|+|+|.- +
T Consensus 80 ~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~ 154 (394)
T 1fuu_A 80 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQ 154 (394)
T ss_dssp HHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHH
T ss_pred HHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHH
Confidence 34444444466999999999999988887765 4678999999998776655443 4679999932 1
Q ss_pred ccCcccccccEEEEeC
Q 005741 573 GMGIDKLNVRRIIHYG 588 (679)
Q Consensus 573 ~~GiDip~v~~VI~~d 588 (679)
...++...+++||.=.
T Consensus 155 ~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 155 RRRFRTDKIKMFILDE 170 (394)
T ss_dssp TTSSCCTTCCEEEEET
T ss_pred hCCcchhhCcEEEEEC
Confidence 2245566778877544
No 298
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=71.04 E-value=10 Score=39.06 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=55.3
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+...++.|.+.++.+..++++...... ......+..+|+|+|.- + ...+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~---~~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----A---ARGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----H---HTTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----h---hcCCCcccCC
Confidence 47799999999999999999999999999888887765432 22334567899999951 1 2344667788
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.99 E-value=81 Score=30.82 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=20.9
Q ss_pred CCCEEEEeecCCcchhhhh-hhhhc--cCCeEEEEc
Q 005741 188 HHDCLVLAATGSGKSLCFQ-IPALL--TGKVVVVIS 220 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~l~--~~~~vLvl~ 220 (679)
|.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4457789999999996543 22222 356666554
No 300
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=70.88 E-value=14 Score=36.36 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=27.9
Q ss_pred CEEEEeecCCcchhhhhhhh-h--ccCCeEEEEc--CchHHHHHHHHHH-HhcCCce
Q 005741 190 DCLVLAATGSGKSLCFQIPA-L--LTGKVVVVIS--PLISLMHDQCSKL-SKHGVTA 240 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~-l--~~~~~vLvl~--Pt~~L~~q~~~~l-~~~~~~~ 240 (679)
-+++++++|+|||......+ . ..+++++++. |.++.+.++...+ ...++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v 156 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV 156 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEE
Confidence 46678999999996544322 2 2466666654 2344444433333 3345543
No 301
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.79 E-value=4.6 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCC
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999999988899999999999999999999864
No 302
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.76 E-value=4.6 Score=45.83 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.0
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.+|||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999754
No 303
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=70.41 E-value=2.6 Score=42.86 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 45667788874 567799999998754
No 304
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.86 E-value=15 Score=37.62 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=56.3
Q ss_pred hhccCCCCCCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc
Q 005741 504 SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM 574 (679)
Q Consensus 504 ~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~ 574 (679)
..+.......++||.++++.-+..+++.+... ++.+..++|+....+.... ..+..+|+|+|. .+..
T Consensus 81 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~ 156 (400)
T 1s2m_A 81 EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASR 156 (400)
T ss_dssp HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHT
T ss_pred HHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHh
Confidence 33333334568999999999999888888763 6788899998876543222 246778999994 2333
Q ss_pred -CcccccccEEEEeC
Q 005741 575 -GIDKLNVRRIIHYG 588 (679)
Q Consensus 575 -GiDip~v~~VI~~d 588 (679)
..++.++++||.-.
T Consensus 157 ~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 157 KVADLSDCSLFIMDE 171 (400)
T ss_dssp TCSCCTTCCEEEEES
T ss_pred CCcccccCCEEEEeC
Confidence 35677888888544
No 305
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=69.73 E-value=4.8 Score=32.54 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCC
Q 005741 510 LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 510 ~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
.+..+++|||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 34568999999988889999999999999888888763
No 306
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.70 E-value=1.8 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
+-++|++|||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578999999999976543
No 307
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=69.09 E-value=5.9 Score=41.60 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=48.1
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEE
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFA 291 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvV 291 (679)
.++++||.+|++.-+...++.|++.++.+..+++. ...........+..+|+|+|.- +. ..+++. +++||
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v-----~e---~GiDip-v~~VI 245 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK-TFEREYPTIKQKKPDFILATDI-----AE---MGANLC-VERVL 245 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS-SCC--------CCCSEEEESSS-----TT---CCTTCC-CSEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch-hHHHHHhhhcCCCceEEEECCh-----hh---eeeccC-ceEEE
Confidence 47899999999999999999999999888888873 3334445555677899999952 22 233455 77766
No 308
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.08 E-value=18 Score=37.13 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCCCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc-Ccccc
Q 005741 510 LEDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GIDKL 579 (679)
Q Consensus 510 ~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~-GiDip 579 (679)
....++||.++++.-+..+++.+... ++.+..++|+....+....+. ....|+|+|. .+.. .++..
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~ 178 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTR 178 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHh
Confidence 34679999999999999999888763 577888999988766544432 2458999994 3333 46667
Q ss_pred cccEEEEeC
Q 005741 580 NVRRIIHYG 588 (679)
Q Consensus 580 ~v~~VI~~d 588 (679)
.+++||.-.
T Consensus 179 ~~~~vViDE 187 (410)
T 2j0s_A 179 AIKMLVLDE 187 (410)
T ss_dssp TCCEEEEET
T ss_pred heeEEEEcc
Confidence 788887533
No 309
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=68.79 E-value=5.1 Score=32.19 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.6
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCC
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999988899999999999999999998864
No 310
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=67.92 E-value=3 Score=41.90 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=18.7
Q ss_pred HHHHcCCCEEEEeecCCcchhhh
Q 005741 183 SAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 183 ~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
..+..++++++.+|+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456889999999999999754
No 311
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=67.72 E-value=2.6 Score=38.12 Aligned_cols=34 Identities=26% Similarity=0.093 Sum_probs=24.3
Q ss_pred EEEEeecCCcchhhhhhhhhccCCeEEEEcCchHH
Q 005741 191 CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISL 225 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L 225 (679)
++|.+++|||||.-+.-.+.. +..+++++.-...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC
Confidence 589999999999755433334 6678888876544
No 312
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.48 E-value=9.6 Score=39.82 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=54.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccccC-cccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-IDKLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~G-iDip~v 581 (679)
..++||.++|+.-+..+++.+.+. ++.+..++|+.+..++...+ ....+|+|+|. .+.++ +++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999999888763 56788899999876654433 24678999994 23333 567788
Q ss_pred cEEEEeC
Q 005741 582 RRIIHYG 588 (679)
Q Consensus 582 ~~VI~~d 588 (679)
++||.=.
T Consensus 205 ~~lVlDE 211 (434)
T 2db3_A 205 RFVVLDE 211 (434)
T ss_dssp CEEEEET
T ss_pred CeEEEcc
Confidence 8888533
No 313
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.91 E-value=7.2 Score=38.48 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=53.7
Q ss_pred hhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----c
Q 005741 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----F 572 (679)
Q Consensus 503 l~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~ 572 (679)
+..+.......++||.++|+.-+..+++.+... ++.+..++|+.....+ .....+|+|+|.- +
T Consensus 153 l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 153 LSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp HHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHH
T ss_pred HHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHH
Confidence 344444333458999999999999988877763 4677777776653221 1356689999952 2
Q ss_pred -c-cCcccccccEEEEeC
Q 005741 573 -G-MGIDKLNVRRIIHYG 588 (679)
Q Consensus 573 -~-~GiDip~v~~VI~~d 588 (679)
. ..+++.++++||.-.
T Consensus 226 ~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 226 SKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp TTTCCCCGGGCSEEEETT
T ss_pred HhcCCCChhhceEEEEeC
Confidence 2 357888999988644
No 314
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=66.90 E-value=11 Score=44.53 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=58.0
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCC----cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-cccCcc-cccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGV----KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGID-KLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~----~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~~~GiD-ip~v 581 (679)
..++||.++++.-+..+++.+.. .++ .+..++|+.+..++....+.+++ .+|+|+|.- +..-+. +.++
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 56899999999999998888875 356 88999999999888888887777 899999952 222222 5577
Q ss_pred cEEEEeC
Q 005741 582 RRIIHYG 588 (679)
Q Consensus 582 ~~VI~~d 588 (679)
++||.-.
T Consensus 177 ~~lViDE 183 (1054)
T 1gku_B 177 DFIFVDD 183 (1054)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 8887544
No 315
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=66.82 E-value=14 Score=36.50 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=55.5
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+...++.|...++.+..++++.+..... .....+..+|+|+|.- + ...+++.+++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a---~~Gidi~~v~ 98 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----A---ARGLDIPQVD 98 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----T---TCSTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----h---hcCcccccee
Confidence 578999999999999999999999999999999887664422 2334567899999942 1 2234566788
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 316
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=66.74 E-value=3.3 Score=41.50 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 34556788874 567799999998754
No 317
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=66.72 E-value=2.6 Score=45.03 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=21.2
Q ss_pred HHHHHHHcCCCEEEEeecCCcchhhhh
Q 005741 180 EALSAWLAHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 180 ~ai~~~l~g~d~iv~a~TGsGKTl~~~ 206 (679)
.++..+..+.++++.+|+|+|||..+-
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 344455678999999999999997654
No 318
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.07 E-value=85 Score=31.60 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCCEEEEeecCCcchhhhhh-hhhc--cCCeEEEEc
Q 005741 188 HHDCLVLAATGSGKSLCFQI-PALL--TGKVVVVIS 220 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l-p~l~--~~~~vLvl~ 220 (679)
|.-+.+++|+|+|||...-. ..+. .++.+++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 34577899999999975432 2222 356666554
No 319
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=66.00 E-value=3.6 Score=41.62 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=19.6
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 45567788874 567799999998753
No 320
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=65.91 E-value=8.3 Score=40.32 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=44.8
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.++++||++|++.-+...++.|++.++.+..+++. ...........+..+|+|+|.
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 46789999999999999999999999888888865 333334455567889999995
No 321
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.87 E-value=3.6 Score=41.73 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEec
Confidence 45567788875 556799999998753
No 322
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.73 E-value=3.7 Score=41.63 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 45567788875 567799999998753
No 323
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=65.73 E-value=14 Score=37.02 Aligned_cols=74 Identities=9% Similarity=-0.026 Sum_probs=55.6
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.++||.++++.-+...++.|.+.++.+..++++.+.... ......+..+|+|+|.- + ...+++.+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~---~~Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----M---SRGIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----H---HHHCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----h---hcCCCcccCC
Confidence 57789999999999999999999999999888887665432 22334567899999942 1 2345677788
Q ss_pred EEEee
Q 005741 289 LFAID 293 (679)
Q Consensus 289 lvViD 293 (679)
+||.-
T Consensus 309 ~Vi~~ 313 (367)
T 1hv8_A 309 CVINY 313 (367)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88763
No 324
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.70 E-value=3.7 Score=41.90 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34556788875 567799999998753
No 325
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=65.62 E-value=7.1 Score=38.92 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=15.8
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
.+++++|||+|||..+...+
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999997665433
No 326
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=65.24 E-value=3.2 Score=41.91 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCF 205 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~ 205 (679)
.+..+++|.|+ +..++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 34556788875 56779999999875
No 327
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=65.06 E-value=8.5 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=31.3
Q ss_pred CcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCC
Q 005741 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999999888888874
No 328
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=64.75 E-value=3.7 Score=41.51 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=19.2
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 34556788875 567799999998753
No 329
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=64.70 E-value=3.1 Score=42.43 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHcCCCEEEEeecCCcchhhh
Q 005741 185 WLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~ 205 (679)
+..|..+++++|||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 446889999999999999644
No 330
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=64.66 E-value=3.6 Score=41.77 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=19.4
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34556788874 567799999998654
No 331
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.64 E-value=4 Score=42.51 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHc--CCCEEEEeecCCcchhh
Q 005741 175 KNFQKEALSAWLA--HHDCLVLAATGSGKSLC 204 (679)
Q Consensus 175 ~~~Q~~ai~~~l~--g~d~iv~a~TGsGKTl~ 204 (679)
.+-+..++..++. +.-+++++|||||||..
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4556667766654 34578999999999964
No 332
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=64.62 E-value=3.7 Score=41.83 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.5
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 45566788875 567799999998753
No 333
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.56 E-value=22 Score=36.29 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=57.5
Q ss_pred hhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccc
Q 005741 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFG 573 (679)
Q Consensus 503 l~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~ 573 (679)
++.+.......++||.++++.-+..+++.+... +..+..++|+.....+ .+.+..+..+|+|+|. .+.
T Consensus 99 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~ 175 (414)
T 3eiq_A 99 LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLN 175 (414)
T ss_dssp HHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHH
T ss_pred HHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHH
Confidence 334444445678999999999999988888763 6677888887765433 4456668889999994 222
Q ss_pred c-CcccccccEEEEeC
Q 005741 574 M-GIDKLNVRRIIHYG 588 (679)
Q Consensus 574 ~-GiDip~v~~VI~~d 588 (679)
. .++...+++||.=.
T Consensus 176 ~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 176 RRYLSPKYIKMFVLDE 191 (414)
T ss_dssp HTSSCSTTCCEEEECS
T ss_pred cCCcccccCcEEEEEC
Confidence 3 35566778777443
No 334
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=64.54 E-value=2.9 Score=41.41 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.1
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
-+++++|||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 367899999999975543
No 335
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=64.36 E-value=3 Score=41.35 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.2
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
-++|.+|||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 467899999999975543
No 336
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=63.96 E-value=3.9 Score=41.61 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 34556788875 567799999998753
No 337
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=63.85 E-value=15 Score=38.44 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=55.1
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-cc-----ccCcccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF-GV---KAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-AF-----GMGIDKLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~-~~---~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-~~-----~~GiDip~v 581 (679)
..++||.|+++.-+...++.+.+. +. .+..+||+....++..... ..+|+|+|. .+ ...+...++
T Consensus 52 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~ 126 (494)
T 1wp9_A 52 GGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLEDV 126 (494)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTSC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhhc
Confidence 679999999999999999988875 55 8999999999887655443 468999994 22 124567788
Q ss_pred cEEEEeCC
Q 005741 582 RRIIHYGW 589 (679)
Q Consensus 582 ~~VI~~d~ 589 (679)
++||.=..
T Consensus 127 ~~vIiDEa 134 (494)
T 1wp9_A 127 SLIVFDEA 134 (494)
T ss_dssp SEEEEETG
T ss_pred eEEEEECC
Confidence 88885443
No 338
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=63.82 E-value=3.8 Score=42.32 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 34566788774 567799999998753
No 339
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=63.39 E-value=3.7 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
...+++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997553
No 340
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.37 E-value=30 Score=27.47 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred EEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc--cccCc-----ccccccEEEEe
Q 005741 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA--FGMGI-----DKLNVRRIIHY 587 (679)
Q Consensus 515 ~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~--~~~Gi-----Dip~v~~VI~~ 587 (679)
.+||.....-..++...+...|..+..++++...+.|+.-++.|......+-...+- +-+.| -.|.+++|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 468888888899999999999999999999999999999999998765554333321 11111 13566666554
Q ss_pred CCCC--CHHHHHHHh
Q 005741 588 GWPQ--SLEAYYQEA 600 (679)
Q Consensus 588 d~p~--s~~~y~Qr~ 600 (679)
.... -+.+|+..+
T Consensus 85 ttddkewikdfieea 99 (162)
T 2l82_A 85 TTDDKEWIKDFIEEA 99 (162)
T ss_dssp ECCCHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHH
Confidence 3321 245565554
No 341
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=63.34 E-value=7.5 Score=26.57 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCchH--HHHHHHHhCCChhhhHHHHh
Q 005741 9 DEVIAKLIEMGFDDSD--ITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 44 (679)
.+-+..|+.|||+..- +.+.+++..=.+..||+.+-
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 4567889999999764 46777777777777777663
No 342
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.20 E-value=3.6 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.+++.+|+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3568999999999997653
No 343
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.99 E-value=3.8 Score=41.54 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=19.2
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 34556788875 567799999998753
No 344
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=62.99 E-value=3.8 Score=41.56 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 182 LSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 182 i~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
+..+++|.|+ +..++||||||.+..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCcceEEEECCCCCCcceEee
Confidence 4456788874 567799999998753
No 345
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=62.79 E-value=3.9 Score=41.76 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=19.0
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecc
Confidence 34456778875 567799999998754
No 346
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=62.42 E-value=3.8 Score=41.73 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 56677889875 557799999998753
No 347
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.31 E-value=4.5 Score=39.10 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCHHHHH-HHHHHHcCC-----CEEEEeecCCcchhhhh
Q 005741 161 VNSLLKKHFGHSSLKNFQKE-ALSAWLAHH-----DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~-ai~~~l~g~-----d~iv~a~TGsGKTl~~~ 206 (679)
+...|+ .-|+ .+.+-. ++..+++++ .+++.+|.|+|||+.+.
T Consensus 75 i~~~l~-~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 75 IYKILE-LNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHH-HTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHH-HcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 445554 4455 365533 355666653 38899999999998654
No 348
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=62.15 E-value=3 Score=37.59 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.7
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+++++|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 349
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=61.95 E-value=3.7 Score=41.26 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.7
Q ss_pred HcCCCEEEEeecCCcchhh
Q 005741 186 LAHHDCLVLAATGSGKSLC 204 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~ 204 (679)
..|+.+++++|||+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688999999999999964
No 350
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=61.56 E-value=5.9 Score=36.62 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEeecCCcchhhh
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH----HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g----~d~iv~a~TGsGKTl~~ 205 (679)
.|.. +...|+ +-|+ .+... ..++..++++ +.+++.+|.|+|||..+
T Consensus 26 ~w~~-I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 26 DWRP-IVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp CSHH-HHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CHHH-HHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4443 444454 3343 34444 5556666655 24888999999999754
No 351
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.45 E-value=4.3 Score=38.52 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=50.3
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc---Ccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM---GIDKL 579 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~---GiDip 579 (679)
..++||.++++.-+..+++.+.+. ++.+..++|+..... .......+..+|+|+|. .+.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 448999999999999999988764 667777766432211 11122356789999993 2222 47888
Q ss_pred cccEEEEeC
Q 005741 580 NVRRIIHYG 588 (679)
Q Consensus 580 ~v~~VI~~d 588 (679)
++++||.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888888644
No 352
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=61.35 E-value=4.1 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 34566788874 567799999998753
No 353
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=61.25 E-value=4.4 Score=41.79 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=27.7
Q ss_pred cCCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchH
Q 005741 187 AHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS 224 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~ 224 (679)
.+.+++++++||+|||......+ ...+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 46789999999999996543222 235778888888755
No 354
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=60.96 E-value=3.2 Score=38.08 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.3
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.++.+++++++|+|||...-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467899999999999976543
No 355
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.90 E-value=4.6 Score=42.29 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.7
Q ss_pred HHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 182 LSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 182 i~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
+..+++|.|+ +..++||||||.+..
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 4456788875 557799999998753
No 356
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=60.79 E-value=5.2 Score=40.12 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=21.0
Q ss_pred HHHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 180 EALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 180 ~ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
..+..+++|.|+ +..++||||||.+..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 466778889885 567799999998753
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=60.72 E-value=23 Score=36.94 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=21.2
Q ss_pred CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEc
Q 005741 189 HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVIS 220 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~ 220 (679)
+.+++++++|+|||..+...+. ..+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3678999999999975543222 2456666664
No 358
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.46 E-value=2.8 Score=40.65 Aligned_cols=20 Identities=40% Similarity=0.318 Sum_probs=16.2
Q ss_pred HcCCCEEEEeecCCcchhhh
Q 005741 186 LAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~ 205 (679)
..|.-+++++|||+|||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667899999999999643
No 359
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=60.13 E-value=3 Score=38.32 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=14.7
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999999544
No 360
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=60.08 E-value=5.2 Score=40.40 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCF 205 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~ 205 (679)
.+..+++|.|+ +..++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 34566788875 56679999999874
No 361
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=59.93 E-value=5 Score=41.11 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=16.4
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
..++++.+|+|+|||..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.78 E-value=3.3 Score=38.08 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.9
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 363
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=59.68 E-value=3.4 Score=37.23 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.3
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
++.+++++++|+|||..+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999976543
No 364
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=59.23 E-value=5 Score=36.12 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCC--CEEEEeecCCcchhhh---hhhhh-ccCCeEEEEcCchHHHHH
Q 005741 176 NFQKEALSAWLAHH--DCLVLAATGSGKSLCF---QIPAL-LTGKVVVVISPLISLMHD 228 (679)
Q Consensus 176 ~~Q~~ai~~~l~g~--d~iv~a~TGsGKTl~~---~lp~l-~~~~~vLvl~Pt~~L~~q 228 (679)
+-|..|+..++..+ -.+|.++-|++|+... ++.+. ..|..+.+|+|+..-...
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHH
Confidence 57888998887544 4677889999999763 22222 468999999999654433
No 365
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=59.17 E-value=3.8 Score=39.39 Aligned_cols=16 Identities=31% Similarity=0.198 Sum_probs=13.2
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
-+++++|||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3678999999999754
No 366
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=59.14 E-value=12 Score=40.41 Aligned_cols=74 Identities=8% Similarity=-0.001 Sum_probs=49.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccccC-c-cccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-I-DKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~G-i-Dip~ 580 (679)
..++||.++++.-+..+.+.+... ++.+..++|+.+...+...+. ...+|+|+|. .+..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999988888877764 899999999987655433321 1368999994 22233 3 5778
Q ss_pred ccEEEEeCC
Q 005741 581 VRRIIHYGW 589 (679)
Q Consensus 581 v~~VI~~d~ 589 (679)
+++||.=..
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 888885443
No 367
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=59.04 E-value=7.4 Score=32.53 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=33.8
Q ss_pred hccCCCCCCcEEEEeCchhH--HHHHHHHHHhCCCcEEEecCCCC
Q 005741 505 MLQEPLEDGLTIIYVPTRKE--TLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~t~~~--~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
.+.+..+..++||||.+-.. +...+..|...|+.+..+.|++.
T Consensus 64 ~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 64 RIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33333345689999998766 88999999999999888999864
No 368
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=58.68 E-value=26 Score=36.83 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHcCCCEEEEeecCCcchhhh
Q 005741 185 WLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~ 205 (679)
+.+|+.+++.++.|.|||...
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHH
T ss_pred hccCCEEEEECCCCCCccHHH
Confidence 346889999999999999644
No 369
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.57 E-value=9.4 Score=41.06 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccccC-c-cccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-I-DKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~G-i-Dip~ 580 (679)
..++||.++++.-+..+.+.+... ++.+..++|+.+...+...+. +..+|+|+|. .+..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888888877764 899999999986554432221 2468999994 22232 3 5677
Q ss_pred ccEEEEeC
Q 005741 581 VRRIIHYG 588 (679)
Q Consensus 581 v~~VI~~d 588 (679)
+++||.=.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 88888543
No 370
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=58.33 E-value=7.8 Score=31.36 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHH----hC---CChhhhHHHHhcCccc
Q 005741 10 EVIAKLIEMGFDDSDITEAVET----VG---PSFNDAIEYILNGSVR 49 (679)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~ 49 (679)
.|+...++|||+...|..+|.. .| +++++.|.-++++...
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~ 75 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKD 75 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHh
Confidence 4788899999999999888865 44 7899999999988665
No 371
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.10 E-value=3.9 Score=37.91 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.8
Q ss_pred cCCCEEEEeecCCcchhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~ 206 (679)
.|+-+++++|+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35668899999999997543
No 372
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.04 E-value=5.4 Score=41.20 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 56677889885 556799999998764
No 373
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=57.97 E-value=5.3 Score=36.07 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.7
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.|+-+++++|.|+|||..+-+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466788999999999975543
No 374
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.11 E-value=3.7 Score=36.64 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.0
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
++-+++++++|+|||.+.-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45688999999999986543
No 375
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=56.97 E-value=4.1 Score=41.21 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 44556778875 567799999998753
No 376
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=56.77 E-value=6.4 Score=34.86 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
++.+++.++.|||||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999976543
No 377
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=56.76 E-value=5.8 Score=41.04 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 180 EALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 180 ~ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
..+..+++|.|+ +..++||||||.+..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 467788899885 556799999998753
No 378
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=56.65 E-value=17 Score=41.30 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=49.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----cccC-c-cccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMG-I-DKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~~~G-i-Dip~ 580 (679)
.+++||.|+++..+..+.+.+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 569999999999988888877764 899999999987665433321 25789999942 2222 3 5677
Q ss_pred ccEEEEeC
Q 005741 581 VRRIIHYG 588 (679)
Q Consensus 581 v~~VI~~d 588 (679)
+++||.=.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 88888533
No 379
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=56.65 E-value=13 Score=41.29 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=44.2
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.++++||.+|++.-+...++.|.+.++.+..+++. ...........+..+|+|+|.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS-SHHHHGGGGGTCCCSEEEECG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH-HHHHHHHHHHCCCceEEEECc
Confidence 47899999999999999999999999998888873 222333344456789999994
No 380
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=56.39 E-value=22 Score=36.25 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=55.0
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+...++.|.+.++.+..++++...... ......+..+|+|+|.- + ...+++.+++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~---~~Gidip~~~ 336 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----C---ARGIDVEQVS 336 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G---TSSCCCTTEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----c---ccCCCccCCC
Confidence 46899999999999999999999999999888887765432 23334567899999952 2 2234566788
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 381
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=56.27 E-value=5.5 Score=39.59 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
..+++.+|+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999754
No 382
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=56.05 E-value=5.6 Score=40.34 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.3
Q ss_pred HHH-cCCCE--EEEeecCCcchhhhh
Q 005741 184 AWL-AHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 184 ~~l-~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.++ .|.++ +..++||||||.+..
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEe
Confidence 344 47774 788899999998754
No 383
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=55.44 E-value=99 Score=31.60 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHH---cCCCEEEEeecCCcchhhh
Q 005741 175 KNFQKEALSAWL---AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 175 ~~~Q~~ai~~~l---~g~d~iv~a~TGsGKTl~~ 205 (679)
-..=..+|...+ +|+.+.+.+|+|+|||...
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 334445555544 5889999999999999654
No 384
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=55.12 E-value=5.7 Score=33.46 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.0
Q ss_pred CcEEEEe-CchhHHHHHHHHHHhCCCcEEEecCCCCH
Q 005741 513 GLTIIYV-PTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (679)
Q Consensus 513 ~~~IVF~-~t~~~~~~l~~~L~~~~~~~~~~hg~~~~ 548 (679)
.++|||| .+-..+...+..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 47677889999999999999999998753
No 385
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=55.05 E-value=4.2 Score=36.76 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.6
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
++.+++++++|||||.+.-.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999986543
No 386
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=54.62 E-value=5.2 Score=40.19 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.0
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
-++|++|||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46789999999997654
No 387
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.54 E-value=4.2 Score=35.95 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.4
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
-+++.+++|||||..+-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999976543
No 388
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=54.46 E-value=5.9 Score=40.57 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=17.9
Q ss_pred HHHHcCCCE--EEEeecCCcchhhhh
Q 005741 183 SAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 183 ~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
..+++|.|+ +..++||||||.+..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHhhcCceeeEeeecCCCCCCCeEee
Confidence 346678875 557799999998753
No 389
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=54.45 E-value=26 Score=28.28 Aligned_cols=60 Identities=7% Similarity=0.023 Sum_probs=41.6
Q ss_pred hccCCCCCCcEEEEeC------chhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCee
Q 005741 505 MLQEPLEDGLTIIYVP------TRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~------t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~ 564 (679)
.+.+.+...+++||.. ....|..+.++|.+.|+....++=...+..++.+.+......+.
T Consensus 10 ~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP 75 (109)
T 3ipz_A 10 TLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFP 75 (109)
T ss_dssp HHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSC
T ss_pred HHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCC
Confidence 3444445779999998 48899999999999999887776555555555555443333333
No 390
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.08 E-value=13 Score=48.74 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH----HHcCCCEEEEeecCCcchhhhhhh
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~----~l~g~d~iv~a~TGsGKTl~~~lp 208 (679)
.+...+.+.+++ .|+ .+.+.|..=+-. +...+.+++++|||+|||.++-..
T Consensus 872 ~l~~ai~~~~~~-~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 872 QLRKKIQEIAKQ-RHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp HHHHHHHHHHHH-TTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 355566666654 476 577766543322 223556899999999999887543
No 391
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=54.08 E-value=3.6 Score=39.77 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=15.6
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997653
No 392
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=53.70 E-value=25 Score=31.82 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=20.0
Q ss_pred ccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccc
Q 005741 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (679)
Q Consensus 261 ~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH 296 (679)
.+++-+.++.+...+..+ ..+.++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l-----~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD-----LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH-----TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh-----cCCCCEEEEECCC
Confidence 566666666666665532 2358999999543
No 393
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=53.67 E-value=5.1 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.0
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+++++|+|+|||...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4677899999999999744
No 394
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.67 E-value=10 Score=34.77 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=34.5
Q ss_pred CCcEEEEeCchhHHHH-HHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec
Q 005741 512 DGLTIIYVPTRKETLS-IAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~-l~~~L~~---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~ 570 (679)
..++||.|+++..+.. +.+.+.. .++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 5555544 3678888888764332211111 2467889884
No 395
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=53.45 E-value=27 Score=35.28 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=57.6
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.++++||.++++.-+...++.|+..++.+..++++...... ......+..+|+|+|.- + ...+++.+++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~---~~Gidip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----L---ARGIDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----G---SSSCCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h---hcCCCcccCC
Confidence 46899999999999999999999999999888887665432 22334567889999952 1 2234566788
Q ss_pred EEEeecccc
Q 005741 289 LFAIDEVHC 297 (679)
Q Consensus 289 lvViDEaH~ 297 (679)
+||.-....
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 888755443
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=53.40 E-value=7.5 Score=37.24 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=19.2
Q ss_pred HcCCCEEEEeecCCcchhhhhhhh
Q 005741 186 LAHHDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~~lp~ 209 (679)
+.|+.+++.+++|+|||.+.-+.+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999998654433
No 397
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.38 E-value=5.7 Score=35.57 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.2
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.++.+++.+++|+|||.....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 457899999999999986543
No 398
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=53.31 E-value=19 Score=40.55 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=51.7
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-c-----ccC-----
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-F-----GMG----- 575 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~-----~~G----- 575 (679)
.+.+++|.++|+.-+...++.+.. .|+.+..+.|+++.+.|.... .+.|+|+|.. + -.+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 355899999999998888877654 689999999999987665443 3789999963 2 223
Q ss_pred --cccccccEEEE
Q 005741 576 --IDKLNVRRIIH 586 (679)
Q Consensus 576 --iDip~v~~VI~ 586 (679)
++...+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 44566777663
No 399
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=53.26 E-value=5.5 Score=40.31 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 45666788875 557799999998753
No 400
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.06 E-value=4.2 Score=37.31 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.9
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+.+.+|+|||||...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999754
No 401
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=52.96 E-value=5.4 Score=36.65 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4777899999999999643
No 402
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=52.74 E-value=27 Score=37.42 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=30.6
Q ss_pred cCCCEEEEeecCCcchhhhhhhh-h--ccCCeEEEEcCchHHHHHHHHHHHhcC
Q 005741 187 AHHDCLVLAATGSGKSLCFQIPA-L--LTGKVVVVISPLISLMHDQCSKLSKHG 237 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~-l--~~~~~vLvl~Pt~~L~~q~~~~l~~~~ 237 (679)
.|.-+++.+++|+|||......+ . ..+.+++++++... ..|....+..++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g 332 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWG 332 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcC
Confidence 45678899999999996433222 1 24567788876543 235554444443
No 403
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.72 E-value=29 Score=34.18 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-----cc-cCcccccc
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FG-MGIDKLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-----~~-~GiDip~v 581 (679)
..++||.+|++.-+..+++.+.+ .+..+..++|+.+..++...+ . ..+|+|+|.- +. ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999999998875 357889999998876544332 2 3789999942 12 23567778
Q ss_pred cEEEEeC
Q 005741 582 RRIIHYG 588 (679)
Q Consensus 582 ~~VI~~d 588 (679)
++||.=.
T Consensus 131 ~~iViDE 137 (337)
T 2z0m_A 131 EIVIIDE 137 (337)
T ss_dssp SEEEEES
T ss_pred cEEEEEC
Confidence 8877544
No 404
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=52.61 E-value=16 Score=38.38 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=44.1
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.++++||.+|++.-+.+.++.|.+.++.+..+++... .........+..+|+|+|.
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH-HHHGGGGGSSCCSEEEECG
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH-HHHHHhhccCCceEEEECC
Confidence 3679999999999999999999999988887776543 3333344457789999995
No 405
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.33 E-value=4.7 Score=39.92 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=23.9
Q ss_pred cCCCEEEEeecCCcchhhhhh-hhhccCCeEEEEcCc
Q 005741 187 AHHDCLVLAATGSGKSLCFQI-PALLTGKVVVVISPL 222 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l-p~l~~~~~vLvl~Pt 222 (679)
.|+-+.+++|+|+|||...-+ .-+. .+.+++.+|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q 160 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANH 160 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecC
Confidence 467788999999999964433 3234 6777655543
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=52.21 E-value=5.8 Score=40.83 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.3
Q ss_pred EEEEeecCCcchhhhh
Q 005741 191 CLVLAATGSGKSLCFQ 206 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~ 206 (679)
++|.+|||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6789999999997554
No 407
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=52.12 E-value=5.5 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.7
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|.-+.+.+|+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999754
No 408
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=52.00 E-value=23 Score=40.04 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=51.9
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-c-----c-------
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-F-----G------- 573 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~-----~------- 573 (679)
.+..++|.++|+.-+...++++.. .|+.+..+.|+++..+|.... ...|+++|+- + -
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 355899999999999988887755 689999999999987765543 3689999952 2 1
Q ss_pred cCcccccccEEEE
Q 005741 574 MGIDKLNVRRIIH 586 (679)
Q Consensus 574 ~GiDip~v~~VI~ 586 (679)
..++...+.++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1255566777663
No 409
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=51.89 E-value=5.4 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.8
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45688999999999754
No 410
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=51.72 E-value=5.9 Score=40.43 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEeecCCcchhhhh
Q 005741 181 ALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (679)
Q Consensus 181 ai~~~l~g~d~--iv~a~TGsGKTl~~~ 206 (679)
.+..+++|.|+ +..++||||||.+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 34556678875 556799999998754
No 411
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=51.58 E-value=25 Score=28.59 Aligned_cols=52 Identities=6% Similarity=0.140 Sum_probs=38.4
Q ss_pred ccCCCCCCcEEEEe------CchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 005741 506 LQEPLEDGLTIIYV------PTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557 (679)
Q Consensus 506 l~~~~~~~~~IVF~------~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~ 557 (679)
+.+.+...+++||. ++...|..+.++|.+.|+....++=...++.++.+.+.
T Consensus 9 v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 9 LKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp HHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 33444477999999 46788999999999999988777655566655555443
No 412
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.10 E-value=4.7 Score=41.31 Aligned_cols=19 Identities=42% Similarity=0.373 Sum_probs=15.7
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|..+++++|||+|||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999643
No 413
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=50.96 E-value=16 Score=40.73 Aligned_cols=73 Identities=8% Similarity=0.097 Sum_probs=52.4
Q ss_pred CcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccccC-c-ccccc
Q 005741 513 GLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-I-DKLNV 581 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~G-i-Dip~v 581 (679)
+++||.++++..+....+.+.+. ++.+..++|+.+...+...+. ...+|+|+|. .+..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999999888888887764 789999999986533322221 2478999994 23333 3 67788
Q ss_pred cEEEEeCC
Q 005741 582 RRIIHYGW 589 (679)
Q Consensus 582 ~~VI~~d~ 589 (679)
++||.=..
T Consensus 138 ~~vViDEa 145 (696)
T 2ykg_A 138 TLMIFDEC 145 (696)
T ss_dssp SEEEEETG
T ss_pred cEEEEeCC
Confidence 88886544
No 414
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=50.77 E-value=5.4 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
++-+++.++.|+|||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5668899999999997554
No 415
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.55 E-value=5.6 Score=42.03 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=15.6
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
++.+++.+|+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 367999999999999765
No 416
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.21 E-value=39 Score=35.81 Aligned_cols=92 Identities=7% Similarity=-0.072 Sum_probs=62.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceE
Q 005741 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289 (679)
Q Consensus 213 ~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~l 289 (679)
++..+|+...+.-+....+.|.+.+..+..++++...... ......+..+|+|+|+..+. ..+++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-------~GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-------TGISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-------HSCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-------cccccccCcE
Confidence 5666666666777788888888887788888776654332 23344677899999987664 2346778999
Q ss_pred EEeecccccccCCCCchHHHHHHHHHHH
Q 005741 290 FAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (679)
Q Consensus 290 vViDEaH~l~~~g~~f~~~~~~l~~~~~ 317 (679)
||+.... ++ ....+.++++..+
T Consensus 420 vi~~~~~----~s--~~~~~Q~~GR~gR 441 (510)
T 2oca_A 420 VVLAHGV----KS--KIIVLQTIGRVLR 441 (510)
T ss_dssp EEESSCC----CS--CCHHHHHHHHHHT
T ss_pred EEEeCCC----CC--HHHHHHHHhcccc
Confidence 9987766 22 4555666665533
No 417
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=50.06 E-value=5.7 Score=36.37 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.0
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+++.+|.|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3677899999999999754
No 418
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.01 E-value=8.2 Score=38.77 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=15.9
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
..++++.+|+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997553
No 419
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=49.96 E-value=6.8 Score=36.55 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=16.3
Q ss_pred HcCCCEEEEeecCCcchhhh
Q 005741 186 LAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~ 205 (679)
..|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999644
No 420
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.93 E-value=4.9 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.3
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
|.-+.+++|.|+|||..+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5567899999999997544
No 421
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.89 E-value=16 Score=47.29 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHH----HHHHcCCCEEEEeecCCcchhhhhhhh
Q 005741 156 DWEVKVNSLLKKHFGHSSLKNFQKEAL----SAWLAHHDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai----~~~l~g~d~iv~a~TGsGKTl~~~lp~ 209 (679)
.+...+.+.+.+ .++ .+.+.+..=+ ..+...+.+++++|||+|||.++-..+
T Consensus 889 ~l~~~i~~~~~~-~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 889 AIVQCLKDAGQR-SGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHHH-HTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 455556666654 466 5677664432 233446789999999999998765443
No 422
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.73 E-value=8.9 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.5
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.+++.+|.|+|||+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45899999999999754
No 423
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.64 E-value=8.5 Score=36.68 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||..+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 424
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=49.60 E-value=5.1 Score=40.69 Aligned_cols=18 Identities=44% Similarity=0.475 Sum_probs=14.7
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+..+++++|||||||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999643
No 425
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.58 E-value=50 Score=35.32 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=22.3
Q ss_pred cCCCEEEEeecCCcchhhhhh---hhhcc-CCeEEEEc
Q 005741 187 AHHDCLVLAATGSGKSLCFQI---PALLT-GKVVVVIS 220 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l---p~l~~-~~~vLvl~ 220 (679)
.|.-+++.+|+|+|||..... .-+.+ +...+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 467889999999999975443 22222 44455554
No 426
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=49.57 E-value=30 Score=27.59 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=40.2
Q ss_pred CCCcEEEEe------CchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEE
Q 005741 511 EDGLTIIYV------PTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566 (679)
Q Consensus 511 ~~~~~IVF~------~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vL 566 (679)
...+++||. ++...|..+..+|.+.++.+..++-...+..++.+.+.+....+..+
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 355799998 46778999999999999888888776666666666555543344443
No 427
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=49.47 E-value=25 Score=39.15 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=41.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHH-HHHcCCccEEEECh
Q 005741 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ-KALRGMYSIIYVCP 268 (679)
Q Consensus 213 ~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ili~Tp 268 (679)
+..+||.+.|+.-+....+.|.+.|+.+..++++........ ........|+|+|.
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 678999999999999999999999999999988733222111 11122347999995
No 428
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=49.24 E-value=35 Score=37.75 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.++||.++|+.-+....+.|...++.+..++++...... ......+..+|+|+|.- + ...+.+.+++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l---~~GlDip~v~ 509 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L---REGLDIPEVS 509 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C---CTTCCCTTEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h---hcCccCCCCC
Confidence 57899999999999999999999999998888866554322 22334567899999832 1 2234566789
Q ss_pred EEEeeccccc
Q 005741 289 LFAIDEVHCV 298 (679)
Q Consensus 289 lvViDEaH~l 298 (679)
+||+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9998877654
No 429
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=49.04 E-value=13 Score=29.98 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhCCCc-EEEecCCCC
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~-~~~~hg~~~ 547 (679)
+..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3568999999988899999999999994 888999874
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=48.65 E-value=11 Score=37.56 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=23.3
Q ss_pred EEEEeecCCcchhhhhhh-hhccCCeEEEEcCc
Q 005741 191 CLVLAATGSGKSLCFQIP-ALLTGKVVVVISPL 222 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp-~l~~~~~vLvl~Pt 222 (679)
+++.++.|+|||...-.. -...+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 678999999999754322 23467788888885
No 431
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=48.59 E-value=9.5 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.0
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3689999999999997653
No 432
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.52 E-value=35 Score=37.81 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=59.6
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.++||.++|+.-+....+.|...++.+..++++....... .....+..+|+|+|.- + ...+.+.+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l---~~GlDip~v~ 515 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L---REGLDIPEVS 515 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C---STTCCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h---hCCcccCCCC
Confidence 578999999999999999999999999988888665543321 2234467899999842 2 2344567899
Q ss_pred EEEeeccccc
Q 005741 289 LFAIDEVHCV 298 (679)
Q Consensus 289 lvViDEaH~l 298 (679)
+||+=+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999888765
No 433
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.50 E-value=34 Score=24.32 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHc--CCCchHHHHHHHHhCCChhhhHHHHhcCcccCC
Q 005741 3 GSGTSRDEVIAKLIEM--GFDDSDITEAVETVGPSFNDAIEYILNGSVRNS 51 (679)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (679)
|.....++-++.|.+| ++|...|..++++++=..+.|++.+++-+..+.
T Consensus 4 ~~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 4 GSSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp CSSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 4556678899999999 448888999999999999999999999766543
No 434
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=48.27 E-value=6.7 Score=35.66 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.7
Q ss_pred CCEEEEeecCCcchhh
Q 005741 189 HDCLVLAATGSGKSLC 204 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~ 204 (679)
|-+++++|.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999964
No 435
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.07 E-value=6.1 Score=35.15 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.3
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
-+++.++.|||||..+-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368899999999976543
No 436
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=48.01 E-value=6.1 Score=34.86 Aligned_cols=16 Identities=13% Similarity=-0.159 Sum_probs=13.5
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.++.|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999754
No 437
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=47.96 E-value=5.3 Score=35.53 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=15.4
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
|+.++++++.|+|||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997553
No 438
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=47.52 E-value=10 Score=34.16 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.3
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
-+++++|+|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999975543
No 439
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=47.51 E-value=5.9 Score=36.46 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=14.2
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
-.++.++.|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999998654
No 440
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.14 E-value=7.3 Score=35.89 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=16.6
Q ss_pred HHHcCCCEEEEeecCCcchhhh
Q 005741 184 AWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 184 ~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
.+..|+-+.+++|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5567888899999999999754
No 441
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=46.59 E-value=32 Score=39.06 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=43.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~ 570 (679)
+..++|.++|+.-+...++++.. .|+.+..+.|+++.++|.... .+.|+++|+
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 55899999999998888877655 689999999999987766544 368999995
No 442
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=46.00 E-value=5.7 Score=35.71 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.5
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.|..+++.++.|||||..+-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355688999999999976543
No 443
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=45.89 E-value=44 Score=26.79 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=39.5
Q ss_pred CCcEEEEeC------chhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeE
Q 005741 512 DGLTIIYVP------TRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565 (679)
Q Consensus 512 ~~~~IVF~~------t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~v 565 (679)
..+++||.. +...|..+..+|.+.++.+..++=...+..++...+......+.+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ 73 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQ 73 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCE
Confidence 567999987 566899999999999999888887777666666655443333333
No 444
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=45.43 E-value=28 Score=38.20 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=44.7
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.++++||.++++.-+...++.|.+.++.+..+++. ...........+..+|+|+|.
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH-HHHHHHHhhcCCCcEEEEECc
Confidence 46799999999999999999999999998888864 333333444567789999995
No 445
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=45.39 E-value=11 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||..+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 358999999999997543
No 446
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=45.38 E-value=16 Score=29.34 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCc-EEEecCCCC
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~-~~~~hg~~~ 547 (679)
..++||||.+-..+...+..|...|+. +..+.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 458999999988899999999999995 888998864
No 447
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.98 E-value=7.7 Score=36.29 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHcCCCEEEEeecCCcchhhh
Q 005741 185 WLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~ 205 (679)
+-.|+-+++++|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 345777899999999999744
No 448
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=44.96 E-value=7.8 Score=36.38 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=11.7
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 449
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.87 E-value=12 Score=34.96 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCCEEEEeecCCcchhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp 208 (679)
+..+++.+++|||||..+-..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 457899999999999865433
No 450
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=44.72 E-value=18 Score=31.08 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCcEEEEeCch--hHHHHHHHHHHhCCCcEEEecCCCC
Q 005741 512 DGLTIIYVPTR--KETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 512 ~~~~IVF~~t~--~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
..++||||.+- ..+...+..|...|+++..+.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 56899999987 5888999999999999999999874
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=44.66 E-value=7.6 Score=33.74 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=12.8
Q ss_pred CEEEEeecCCcchhh
Q 005741 190 DCLVLAATGSGKSLC 204 (679)
Q Consensus 190 d~iv~a~TGsGKTl~ 204 (679)
-.++.+|+|+|||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999964
No 452
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=44.37 E-value=20 Score=30.00 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCc-EEEecCCCC
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~-~~~~hg~~~ 547 (679)
..++||||.+-..+...+..|...|+. +..+.|++.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 568999999988899999999999985 888999974
No 453
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=44.06 E-value=11 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.5
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
.-+++++|.|+|||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999997553
No 454
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=44.06 E-value=7.6 Score=42.56 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=15.0
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
++++.+|+|+|||..+-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999997543
No 455
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=44.01 E-value=42 Score=36.08 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=54.8
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhc---CCceEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhc
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~ 285 (679)
.+.++||.++++.-+...+..|.+. ++.+..++++..... .......+..+|+|+|.- + ...+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~---~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G---ARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G---TSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h---hcCCCcc
Confidence 4679999999999999999999886 788888887766543 223444577899999952 2 2234566
Q ss_pred CceEEEeec
Q 005741 286 GIALFAIDE 294 (679)
Q Consensus 286 ~~~lvViDE 294 (679)
++++||.-.
T Consensus 410 ~v~~VI~~~ 418 (563)
T 3i5x_A 410 NVHEVLQIG 418 (563)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEEC
Confidence 788887543
No 456
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=43.92 E-value=9.3 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
+.+++.++.|||||..+-.
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999976543
No 457
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=43.80 E-value=8.5 Score=38.64 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999997553
No 458
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=43.80 E-value=43 Score=36.28 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=55.0
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhc---CCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhc
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~ 285 (679)
.+.++||.++++.-+...++.|.+. ++.+..++++...... ......+..+|+|+|.- + ...+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~---~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G---ARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G---TSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----h---hcCCCcc
Confidence 3679999999999999999999886 7888888877665432 23344577899999952 1 2234566
Q ss_pred CceEEEeec
Q 005741 286 GIALFAIDE 294 (679)
Q Consensus 286 ~~~lvViDE 294 (679)
++++||.-.
T Consensus 359 ~v~~VI~~~ 367 (579)
T 3sqw_A 359 NVHEVLQIG 367 (579)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEcC
Confidence 788888654
No 459
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=49.51 E-value=4.9 Score=35.74 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=49.5
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.++||.++++.-+...++.|...++.+..++++...... ......+..+|+|+|. .+ ...+++..++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-------~~Gid~~~~~ 100 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA-------ARGIDIPDVS 100 (170)
Confidence 35678999999999999999999988888888776544321 2222345678999983 22 2233455566
Q ss_pred EEEe
Q 005741 289 LFAI 292 (679)
Q Consensus 289 lvVi 292 (679)
+||.
T Consensus 101 ~Vi~ 104 (170)
T 2yjt_D 101 HVFN 104 (170)
Confidence 6665
No 460
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=43.49 E-value=7.4 Score=35.88 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
|.-+.+.+|+|||||..+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778999999999643
No 461
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.46 E-value=12 Score=33.74 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=17.2
Q ss_pred cCCCEEEEeecCCcchhhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp 208 (679)
.+..+++.++.|||||...-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999865443
No 462
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.44 E-value=7.6 Score=35.50 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhh
Q 005741 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
..+..+...+. ...|.-+.+.+|.|+|||..+
T Consensus 11 ~~~~~~~~~~~-~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 11 SVEKVDRQRLL-DQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCCHHHHHHHH-TSCCEEEEEECSTTSSHHHHH
T ss_pred ccCHHHHHHhc-CCCCeEEEEECCCCCCHHHHH
Confidence 45555554331 123567889999999999754
No 463
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=43.34 E-value=30 Score=38.15 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=43.8
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.++++||.+|++.-+.+.++.|++.++.+..++++..... ...+..+|+|+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e----r~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV----IPTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG----SCSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH----HHhCCCcEEEECC
Confidence 4679999999999999999999999999999988776543 2234569999995
No 464
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.30 E-value=8.5 Score=34.40 Aligned_cols=16 Identities=38% Similarity=0.285 Sum_probs=13.4
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
-.++++|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999754
No 465
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=43.22 E-value=11 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=20.6
Q ss_pred CCEEEEeecCCcchhhhhh-hhh--ccCCeEEEEc
Q 005741 189 HDCLVLAATGSGKSLCFQI-PAL--LTGKVVVVIS 220 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l-p~l--~~~~~vLvl~ 220 (679)
+-+.+++++|+|||.+... ... ..+++++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467889999999965443 222 2466666653
No 466
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=42.86 E-value=25 Score=30.22 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCC-cEEEecCCCC
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLP 547 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~-~~~~~hg~~~ 547 (679)
..++||||.+-..+...+..|...|+ ++..+.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 56899999997778899999999999 5999999984
No 467
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=42.82 E-value=7.7 Score=34.97 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.2
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
+.-+++.++.|+|||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999997553
No 468
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=42.54 E-value=79 Score=31.66 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=19.6
Q ss_pred CEEEEeecCCcchhhhhhhh--h-ccCCeEEEEc
Q 005741 190 DCLVLAATGSGKSLCFQIPA--L-LTGKVVVVIS 220 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~--l-~~~~~vLvl~ 220 (679)
.+.+++++|+|||..+.-.+ + ..+.+++++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 57889999999997543222 2 2455555544
No 469
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=42.48 E-value=17 Score=38.24 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=43.5
Q ss_pred cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005741 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 212 ~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.++++||.+|++.-+...++.|.+.++.+..+++.... ........+..+|+|+|.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCC-CCGGGSSSCCCSEEEESS
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHH-HHHhhccCCCceEEEECC
Confidence 36799999999999999999999999998888875322 222233456789999994
No 470
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=42.32 E-value=8.3 Score=35.25 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.6
Q ss_pred CCEEEEeecCCcchhhh
Q 005741 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+-++++++.|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 471
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=42.29 E-value=36 Score=38.75 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=44.8
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~ 571 (679)
.+.+++|.++|+.-+...++.+.. .|+.+..+.|+++.++|.... .++|+++|..
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 355899999999988887776654 699999999999987777665 3789999953
No 472
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.18 E-value=7.5 Score=35.05 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
+.-+++.+++|||||..+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34578999999999986543
No 473
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=41.91 E-value=54 Score=27.05 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=38.1
Q ss_pred hccCCCCCCcEEEEeCc------hhHHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHH
Q 005741 505 MLQEPLEDGLTIIYVPT------RKETLSIAKYLCGFGVK---AAAYNASLPKSQLRRVHTE 557 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~t------~~~~~~l~~~L~~~~~~---~~~~hg~~~~~~R~~v~~~ 557 (679)
.+.+.+...+++||..+ ...|..+.++|.+.|+. +..++-....+.|+.+.+.
T Consensus 8 ~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 8 AIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 33444447799999984 88999999999999987 6666655566655555443
No 474
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=41.88 E-value=20 Score=30.46 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhCCC-cEEEecCCCC
Q 005741 511 EDGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLP 547 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~~~-~~~~~hg~~~ 547 (679)
+..++||||.+-..+...+..|...|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 356899999998888999999999999 5899999974
No 475
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.60 E-value=12 Score=33.35 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.4
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
..+++.++.|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 476
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=41.47 E-value=12 Score=34.62 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.7
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
.+++.++.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986544
No 477
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.46 E-value=11 Score=33.22 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=16.7
Q ss_pred CCEEEEeecCCcchhhhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~ 209 (679)
+++++.++.|||||.+.-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999998664433
No 478
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.31 E-value=33 Score=25.12 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHcCC---CchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005741 5 GTSRDEVIAKLIEMGF---DDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
.....+.+..|.+| | |...|..+++.+|=..+.|++-+|+-+..
T Consensus 15 ~~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 15 RLEFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp CCCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 45567889999999 6 78889999999999999999999986544
No 479
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.21 E-value=12 Score=34.60 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEeecCCcchhhh
Q 005741 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
.++.+++.. .+..|.-+++.++.|+|||..+
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 456666553 2345667889999999999754
No 480
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.09 E-value=9.9 Score=34.15 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.3
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999654
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=41.05 E-value=8.8 Score=39.13 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.4
Q ss_pred CEEEEeecCCcchhhh
Q 005741 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
-.++++|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 482
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.00 E-value=15 Score=40.19 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHcCCCEEEEeecCCcchhhhhh
Q 005741 184 AWLAHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 184 ~~l~g~d~iv~a~TGsGKTl~~~l 207 (679)
.+..++.+++.+|+|+|||..+-.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHH
Confidence 345688999999999999976543
No 483
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.91 E-value=11 Score=34.15 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.7
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.+.-+++.+++|||||..+-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999976543
No 484
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.85 E-value=11 Score=34.77 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=14.7
Q ss_pred CEEEEeecCCcchhhhhh
Q 005741 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
.+++.++.|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986543
No 485
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=40.85 E-value=18 Score=38.19 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005741 5 GTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
.+...|+..-|++.+ ...+.++++.+|-..+.+.+-+.
T Consensus 28 ~v~~eHLLlaLl~~~--~~~~~~iL~~~gvd~~~l~~~l~ 65 (468)
T 3pxg_A 28 NIGTEHILLGLVREG--EGIAAKALQALGLGSEKIQKEVE 65 (468)
T ss_dssp EECHHHHHHHHHHSC--CSHHHHHHHHHTCCHHHHHHHHH
T ss_pred cccHHHHHHHHHhcc--CcHHHHHHHHcCCCHHHHHHHHH
Confidence 456778888888753 34566777888877666555544
No 486
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=40.75 E-value=13 Score=34.41 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.2
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
+..+++.++.|||||...-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 487
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=40.18 E-value=15 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.6
Q ss_pred CCEEEEeecCCcchhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
.-++++++.|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 457899999999997543
No 488
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=39.95 E-value=9 Score=35.21 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=14.3
Q ss_pred CCCEEEEeecCCcchhhh
Q 005741 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+.-+.+.+|+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678999999999754
No 489
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=39.92 E-value=29 Score=40.98 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=51.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEe-----cccccCc-ccccccEEE
Q 005741 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT-----IAFGMGI-DKLNVRRII 585 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT-----~~~~~Gi-Dip~v~~VI 585 (679)
+.++||-+|++.-+...++.+.+....+..++|+++ .++..+|+|+| +.+.++- .+.++++||
T Consensus 227 g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEE
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEE
Confidence 568999999999999999999987668999999886 34678999999 3444443 367788887
Q ss_pred E
Q 005741 586 H 586 (679)
Q Consensus 586 ~ 586 (679)
.
T Consensus 296 I 296 (1108)
T 3l9o_A 296 F 296 (1108)
T ss_dssp E
T ss_pred E
Confidence 4
No 490
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=39.77 E-value=13 Score=34.60 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
+..+++.++.|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 491
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=39.29 E-value=15 Score=33.93 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=16.5
Q ss_pred CCCEEEEeecCCcchhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp 208 (679)
+..+++.++.|||||..+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456889999999999765443
No 492
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=39.18 E-value=15 Score=32.33 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.3
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
+.+++.++.|||||..+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578999999999986543
No 493
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.94 E-value=10 Score=42.29 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=49.0
Q ss_pred CCcEEEEeCchhHHHHH-HHHHHhCC---CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-c-----------ccC
Q 005741 512 DGLTIIYVPTRKETLSI-AKYLCGFG---VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-F-----------GMG 575 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l-~~~L~~~~---~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~-----------~~G 575 (679)
.+++||.+|++.-+... ++.|.+.. +.+..++|+.+..++...+. +..+|+|+|.- + ...
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999999988888 88777643 89999999986554433332 56889999942 2 223
Q ss_pred cccccccEEEEeC
Q 005741 576 IDKLNVRRIIHYG 588 (679)
Q Consensus 576 iDip~v~~VI~~d 588 (679)
+.+..+++||.=.
T Consensus 132 ~~~~~~~lvViDE 144 (699)
T 4gl2_A 132 VQLSDFSLIIIDE 144 (699)
T ss_dssp CCGGGCSEEEEES
T ss_pred eecccCcEEEEEC
Confidence 5778889888543
No 494
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.93 E-value=11 Score=34.33 Aligned_cols=21 Identities=14% Similarity=-0.083 Sum_probs=16.6
Q ss_pred cCCCEEEEeecCCcchhhhhh
Q 005741 187 AHHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~l 207 (679)
.++.+++.++.|||||...-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356788999999999976543
No 495
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=38.73 E-value=9.9 Score=36.32 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.1
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005741 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
..+++++++|||||..+-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEEESCGGGTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 496
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=38.71 E-value=11 Score=33.81 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.9
Q ss_pred CEEEEeecCCcchhhhh
Q 005741 190 DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~ 206 (679)
-+++.++.|+|||...-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999997543
No 497
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=38.56 E-value=9.5 Score=34.03 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.3
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005741 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.|..+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556789999999999754
No 498
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=38.48 E-value=1.2e+02 Score=30.27 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHH-HhcCCceEEEcCCCCcHHHHHHHHcCCccEEE-EChH---
Q 005741 198 GSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMYSIIY-VCPE--- 269 (679)
Q Consensus 198 GsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili-~Tp~--- 269 (679)
++| |.+..+.+ +.++..+|+..|+-.-.......+ ...+..+..+... +.+.....+.....+++ ++|.
T Consensus 74 ~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--d~~~l~~~i~~~~~~v~~~~~~npt 150 (386)
T 1cs1_A 74 NTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--DEQALRAALAEKPKLVLVESPSNPL 150 (386)
T ss_dssp SSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT--CHHHHHHHHHTCCSEEEEECSCTTT
T ss_pred CCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC--CHHHHHHhhccCCcEEEEeCCCCCC
Confidence 677 64332222 235667888888765444433333 4567766655432 33333334444445444 4342
Q ss_pred -HHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005741 270 -TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 270 -~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
.+.. +..+.......+ -++|+||+|....
T Consensus 151 G~~~~-l~~i~~l~~~~~-~~li~De~~~~~~ 180 (386)
T 1cs1_A 151 LRVVD-IAKICHLAREVG-AVSVVDNTFLSPA 180 (386)
T ss_dssp CCCCC-HHHHHHHHHHTT-CEEEEECTTTCTT
T ss_pred CcccC-HHHHHHHHHHcC-CEEEEECCCcccc
Confidence 2221 222222222223 4789999997643
No 499
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.43 E-value=16 Score=47.09 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.3
Q ss_pred HcCCCEEEEeecCCcchhhh
Q 005741 186 LAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~ 205 (679)
..++.+++++|||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35789999999999999755
No 500
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.33 E-value=13 Score=34.83 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.2
Q ss_pred CCCEEEEeecCCcchhhhhhhh
Q 005741 188 HHDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~ 209 (679)
+..+++.+++|||||..+-..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999997654433
Done!