BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005742
(679 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/674 (59%), Positives = 495/674 (73%), Gaps = 28/674 (4%)
Query: 7 SRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVRNSKGKSVSWSSKCVTE 65
S D+++ K++EMGF+ D EAV+ VG S +DA+EYIL G+ R K S C +
Sbjct: 4 SSDQLVMKIVEMGFEKLDALEAVKAVGGKSCDDAVEYILKGNHRTGGFKPASLL--CSSG 61
Query: 66 NGKTLGKRTL-SSANSLGQMRQASLLDHFQSGNRQKRGKRNVGD-DVSVSGSVVSPSIVE 123
+ K LGKR + SS +S RQ+SLLDHF+S N+ K+ G +V VS E
Sbjct: 62 SNKILGKRAMPSSFSSSESKRQSSLLDHFRSVNQNKKKGDTFGTVEVDSQLETVSEHSEE 121
Query: 124 EQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALS 183
+K P + L C E S WE +VNS+L+ FG SSL++FQ+EALS
Sbjct: 122 VRKSLAPVFMESSCFPEGQLLNGCS---EASSSWEKRVNSILRNRFGISSLRSFQREALS 178
Query: 184 AWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243
W+AH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KLS+H V+ACFL
Sbjct: 179 TWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKVSACFL 238
Query: 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303
GSGQ DN +E+KA++GMY IIYVCPETV+RLIKPLQ+LA++ GIALFAIDE HCVSKWGH
Sbjct: 239 GSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHCVSKWGH 298
Query: 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT 363
DFRP YR+LSVLRENF A+NL+ L++D+P+MALTATAT+ V+EDIL+SLH+SK TK VLT
Sbjct: 299 DFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLT 358
Query: 364 SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSS 423
SFFRPNL+FSVKHS+T +SY KDF L+D+Y++KK + K+ + I ++ ++Q+D S
Sbjct: 359 SFFRPNLQFSVKHSRTKFASSYAKDFQNLVDLYSEKKNSTGKKLAVISRESEEQTDFGSH 418
Query: 424 SSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SVDDWDVACGEFYGH 478
S + + + NS GKE+S +LE++ SVDDWDVACGEF
Sbjct: 419 DSENIHETDYDEDEEDQENSLAKKNSSNGKELSEAYLEDETDIFQSVDDWDVACGEFC-- 476
Query: 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538
+ +LL P S Q+ LE GLTIIYVPTRKE+++IAKYLCG G+K
Sbjct: 477 ----------AMPSCELLEIPVP--SEKQKDLE-GLTIIYVPTRKESVNIAKYLCGVGLK 523
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
AAAYNASLPK LR+VH +FH+NKL+VVVATIAFGMGIDK NVR+IIHYGW QSLEAYYQ
Sbjct: 524 AAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQ 583
Query: 599 EAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
EAGRAGRDG LA+CVLYA+LS PTLLPSRRS++QT+QAY+MLSDCFRYGMNTS CRAKI
Sbjct: 584 EAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKI 643
Query: 659 LVEYFGEDFSHEKC 672
LVEYFGE+FS +KC
Sbjct: 644 LVEYFGEEFSSKKC 657
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 159/302 (52%), Gaps = 46/302 (15%)
Query: 84 MRQASLLDHFQSGNRQKRGKRNVGDDVS---VSGSVVSPSIVEEQKESYPGMDCNLKAES 140
+R+A L S N++K + N GD + +S S++ P I E + G +
Sbjct: 552 IREAQL----DSRNKEKNTRNNTGDTTNPSLLSDSLLKPQIENPAHERFRGFNF------ 601
Query: 141 DSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSG 200
P E+ + K FG + Q EA++A L DC +L TG G
Sbjct: 602 -------PHSKEMMK--------IFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGG 646
Query: 201 KSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-- 258
KSLC+Q+P ++ V +VISPL SL+ DQ KL+ + A +L + D + L+
Sbjct: 647 KSLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLS 706
Query: 259 ---GMYSIIYVCPETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
+ ++YV PE V RLI ++ L E + +A F IDE HCVS+WGHDFRPDY+RL
Sbjct: 707 KKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRL 766
Query: 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
+VLR+ F + +P+MALTATA +V++DIL L M+K F + SF R NL++
Sbjct: 767 NVLRQKFQS---------VPMMALTATANPRVKKDILNQLKMTKPQIFTM-SFNRDNLKY 816
Query: 373 SV 374
V
Sbjct: 817 EV 818
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 844 IIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGM 903
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRS- 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG + C+L Y +++ + L+ +
Sbjct: 904 GIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDG 963
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED 666
TKQ + L Y N CR L+ YFGE+
Sbjct: 964 NSHTKQTHFNNLYSMVHYCENVVECRRMQLLSYFGEN 1000
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 658
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 659 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 709
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 710 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 740
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 5/168 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYV 676
R+E +M++ +Y +++S CR +I++ +F ED +K L +
Sbjct: 884 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGI 929
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q + T + +VI P
Sbjct: 479 SCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 538
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L +++CFLGS Q N V Q G +IY+ PE R I LQ L
Sbjct: 539 LISLMEDQVLQLEMSNISSCFLGSAQSKN-VLQDVKDGKMRVIYMTPEFCSRGISLLQDL 597
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L AIDE HC+S+WGHDFR YR L +LK + ++P++ALTATA+
Sbjct: 598 DNRYGITLIAIDEAHCISEWGHDFRSAYRSL---------GSLKRMLPNVPIVALTATAS 648
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+REDI KSL++ + TSF RPNL V T+
Sbjct: 649 PSIREDITKSLNL-HNPQVTCTSFDRPNLYLDVARKTTN 686
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 4/155 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TI+Y PTRK + + L G+ Y+A + Q R VH F +++ VVAT+A
Sbjct: 707 EGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVA 766
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L+ A+++ +L
Sbjct: 767 FGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEI 826
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF 663
++ + +ML+ +Y +N+S CR KI++ +F
Sbjct: 827 PNKGFREYKLKMLTKMEKY-LNSSTCRRKIILSHF 860
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 138/228 (60%), Gaps = 18/228 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + + FG S + QKE ++A + D LV+ A G GKSLC+Q+PA+L G
Sbjct: 72 EWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGT 131
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFL--GSGQPDNKVEQKALRGM---YSIIYVCPET 270
+V+SPL+SL+ DQ L+ G++A L SG+ + K KAL I+YV PE
Sbjct: 132 TLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEK 191
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
V R + L++ + ++L +IDE HC S+WGHDFRPDY+ LS+L+ F
Sbjct: 192 VSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPK------ 245
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ALTATAT +V+ D+++ LH+ K KFV +S RPNL +SV+
Sbjct: 246 ---VPMVALTATATQKVQNDLIEMLHIPKCVKFV-SSVNRPNLFYSVR 289
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE IA L G+ A Y+A + + +VH + +NKL+V+V T+AFGMG
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+L+ + +P R
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVP------RQSSMVF 430
Query: 636 QAY---RMLSDCFRYGMNTSCCRAKILVEYFGE 665
Y + L D RY + + CR +FGE
Sbjct: 431 YEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGE 463
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 19/221 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ HFGH+ + Q EA+ A ++ DC L TG GKS+C+QIPAL +V+V+SPLI
Sbjct: 27 LLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLI 86
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSI--IYVCPETVIR--LIK 276
+LM +Q L + G+ A +L S Q NK+ + G S+ +YV PE + +
Sbjct: 87 ALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFML 146
Query: 277 PLQRLAESRGIA-LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L++L SRG+ L AIDE HC+S WGHDFRP YR+LS LR++ D+P++A
Sbjct: 147 KLRKL-HSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLA---------DVPVLA 196
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
LTATA +V++D++ SL++ + + +SF RPN+ + V++
Sbjct: 197 LTATAAPKVQKDVIDSLNL-RNPLVLKSSFNRPNIFYEVRY 236
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 10/187 (5%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ L L + + IIY R ++ +L G+ +AAY+A L
Sbjct: 238 DLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRST 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ +K +++VAT+AFGMGIDK +VR + H+ P+S+E++YQE+GRAGRD + V
Sbjct: 298 VLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSV 357
Query: 614 LYANL---SSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC----CRAKILVEYFGED 666
LY + M LL R SE++ + + + F + T C CR K ++E FGE+
Sbjct: 358 LYYGVDDRKKMEYLL--RNSENKKSSSSKKPTSDFEQ-IVTYCEGSGCRRKKILESFGEE 414
Query: 667 FSHEKCQ 673
F ++C+
Sbjct: 415 FPVQQCK 421
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQQLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYV 676
E +M+ +Y +++S CR +I++ +F ED +K L +
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDI 894
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 16/177 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGE 394
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 887 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 944
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 945 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1004
Query: 625 LPSRRSED-QTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQ 673
+ + + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1005 IMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCK 1056
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 666 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 725
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 726 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 785
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 786 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 836
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 837 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 874
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 9/176 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 893 HHPYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 950
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 951 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1010
Query: 623 TLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQLY 675
L+ + + TK+ + L Y N + CR L+ YFGE F+ + C+ Y
Sbjct: 1011 RLIMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKY 1066
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 135/227 (59%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PAL+ G +
Sbjct: 437 WTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGIT 496
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-----QPDNKVEQKALRGMYSIIYVCPETV 271
+VISPL+SL+ DQ L + + A L +G Q E + Y ++YV PE V
Sbjct: 497 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKV 556
Query: 272 IR---LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ L++ L+ L SRG +A F IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 557 AKSDSLLRHLENL-NSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP------- 608
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 609 --NIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 652
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 26/184 (14%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY +R + +++ L FG KAA Y+ S+ Q + T++ ++++ ++ AT+A
Sbjct: 673 DECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA 732
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---------------- 615
FGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY
Sbjct: 733 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQG 792
Query: 616 -ANLSSMPT-----LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ S M T R E T+ RM+ RY N CR + + + GE F
Sbjct: 793 GVDQSPMATGYNRVASSGRLLETNTENLLRMV----RYCENEVECRRFLQLVHLGEKFDS 848
Query: 670 EKCQ 673
C+
Sbjct: 849 TNCK 852
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 18/214 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q V + ++ M ++YV PE + R L
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +ALTATA
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIALTATA 903
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +VR DIL L++ K K+ L+SF R NLR+ V
Sbjct: 904 TPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRV 936
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 98/166 (59%), Gaps = 13/166 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C GV+A +Y+A L + ++ K+ V+ AT+AFGMG
Sbjct: 962 IIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMG 1021
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRS-- 630
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M +L S ++
Sbjct: 1022 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQ 1081
Query: 631 ----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
+ YR++ C N + CR ++YFGE F+ E+C
Sbjct: 1082 YNVKKIHVDNLYRIVGYC----ENLTDCRRAQQLDYFGEHFTSEQC 1123
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 127/219 (57%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG S + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 388 IFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLR 447
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL + A +L D + ++ + ++YV PE V RL+
Sbjct: 448 SLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLL 507
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F + +P+MA
Sbjct: 508 SALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHS---------VPMMA 558
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DI L M K F + SF R NL++ V
Sbjct: 559 LTATANPRVQKDIQNQLEMLKPQVFTM-SFNRHNLKYDV 596
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
IIY +R E + A L G+ A AY+A L S V ++ ++ +V+ ATIAFGM
Sbjct: 622 IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGM 681
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YY E+GRAGRDG ++ C+L+ + S + L L +
Sbjct: 682 GIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDG 741
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ 673
T+Q + L Y N CR L+ YFGE DF+ C+
Sbjct: 742 NSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCK 786
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 132/226 (58%), Gaps = 18/226 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W + K FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PALL +
Sbjct: 453 WTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGIT 512
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-----QPDNKVEQKALRGMYSIIYVCPETV 271
+VISPL+SL+ DQ L + ++A L +G Q + E + + Y ++YV PE V
Sbjct: 513 LVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKV 572
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ L++ L+ L +A F IDE HCVS+WGHDFRPDY+ L VL++ F
Sbjct: 573 AKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFP-------- 624
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 625 -NIPMLALTATATTSVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 668
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 26/184 (14%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY +R + + + L FG KAA Y+ S+ + V ++ ++++ ++ AT+A
Sbjct: 689 DECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVA 748
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL------ 625
FGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY + + +
Sbjct: 749 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQG 808
Query: 626 ----------------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
R E T+ RM+S C N CR + + + GE F
Sbjct: 809 GLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYC----ENEVDCRRFLQLVHLGEKFDS 864
Query: 670 EKCQ 673
C+
Sbjct: 865 TNCK 868
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 127/229 (55%), Gaps = 19/229 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ SLL +FG+ ++ Q EA+ A + + TG GKS+C+QIPAL+ +V
Sbjct: 4 RAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPE--TVIR 273
ISPLISLM DQ L + G+ A ++ S Q + ++ ++ L+ G Y + Y+ PE T I
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIE 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
I+ LQ + + L AIDE HC+S+WGHDFRP YR + +L + L +
Sbjct: 124 FIRILQGI----DVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELHDKPVI 171
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
MALTATAT +V +DI K LH+ K V T F R NL F V + R
Sbjct: 172 MALTATATPEVHDDICKQLHIQKENT-VYTGFSRENLTFKVVKGENKDR 219
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE I + L V+A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL ++ L+ E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+ KQ + L Y +T C + ++ YFGE
Sbjct: 354 KQKQDLKKLRQMVDY-CHTEDCLQRFILMYFGE 385
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 19/215 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ + Q +A A + DC VL TG GKSLC+Q+PA L V +VISPL+SL+ D
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 229 QCSKLS-KHGVTACFLGSGQPDNK---VEQKALRGMYS--IIYVCPETVI---RLIKPLQ 279
Q L+ K G+ A FL S Q ++ V Q+ R S ++YV PE + ++ L+
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLR 321
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L +A F +DE HCVS+WGHDFRPDYR L L++NF +P+MALTAT
Sbjct: 322 CLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPR---------VPVMALTAT 372
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT V +D+LKSL + + + SF R NL++ V
Sbjct: 373 ATESVCQDVLKSLRIPRAPVLKM-SFDRINLKYEV 406
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 113/205 (55%), Gaps = 18/205 (8%)
Query: 489 SFERTDL----LNKPAERLSMLQEPLEDGLT----IIYVPTRKETLSIAKYL---CGFGV 537
SF+R +L + K E L LQE L D I+Y ++ E + +AK+L C V
Sbjct: 396 SFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCK--V 453
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
K Y+A +P Q V ++ ++ +V ATIAFGMGIDK +VR +IH +++E+YY
Sbjct: 454 KTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYY 513
Query: 598 QEAGRAGRDGHLADCV-LYA--NLSSMPTLLPS--RRSEDQTKQAYRMLSDCFRYGMNTS 652
QE+GRAGRDG A C+ LY + S + +L + R+ D+ K A +Y +
Sbjct: 514 QESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYCELKT 573
Query: 653 CCRAKILVEYFGEDFSHEKCQLYVN 677
CR ++L+EYFGE F C+ +N
Sbjct: 574 ECRRQMLLEYFGESFDRMICKSSLN 598
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 15/220 (6%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+ E +L++ FG+ + Q+E + L+ DCLV+ TG GKSLC+QIPALL +
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL 67
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ +L +GV A L S Q + V G ++Y+ PE ++
Sbjct: 68 TVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L L+ LA + L A+DE HC+S+WGHDFRP+Y L LR+ F +P
Sbjct: 128 -LDNFLEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT---------LP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
MALTATA R+DI++ L ++ ++SF RPN+R+
Sbjct: 177 FMALTATADDTTRQDIVRLLGLNDPL-IQISSFDRPNIRY 215
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 93/164 (56%), Gaps = 13/164 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + A L G+ AAAY+A L + V +F + L++VVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L+ + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKC 672
Q L D R+ +N CR +L+ YFGE E C
Sbjct: 357 QG--QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-RQEPC 397
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 125/214 (58%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E + A L D LV+ ATG+GKSLC+QIPAL + +VISPLI
Sbjct: 29 VLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLI 88
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A +L S Q +V+ K + G ++YV PE V +
Sbjct: 89 SLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEKV--MTTSFFH 146
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L ++ AIDE HC+S+WGHDFRP+Y +L L+ F P+MALTATA
Sbjct: 147 LISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFP---------HAPIMALTATA 197
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R+DIL+ L++ ++ SF RPN+R+++
Sbjct: 198 DHATRQDILRHLNLQSPHVYI-GSFDRPNIRYTL 230
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 106/198 (53%), Gaps = 19/198 (9%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R L+ K P E+L + IIY +R + IA+ L GV A AY+A
Sbjct: 222 DRPNIRYTLVEKFKPMEQLCRFVLGQKGKSGIIYCNSRSKVERIAESLRNKGVSAQAYHA 281
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
L SQ +V F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAG
Sbjct: 282 GLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAG 341
Query: 605 RDGHLADCVLY---ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCR 655
RD A+ VL+ A+ + + +L P R+ E QA ++ + CR
Sbjct: 342 RDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEALKLQAIGEFAE-------SQTCR 394
Query: 656 AKILVEYFGEDFSHEKCQ 673
+L+ YFGE + CQ
Sbjct: 395 RLVLLNYFGEH-QQKPCQ 411
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 127/226 (56%), Gaps = 18/226 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W + N +LK F + Q A++A ++ D +V+ +TG GKSLC+Q+PALL +
Sbjct: 70 WSDEANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKGLT 129
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGM--YSIIYVCPETV 271
+VISPL+SL+ DQ +L K G+ A L + P + +VEQ +G ++YV PE +
Sbjct: 130 LVISPLVSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLLYVTPEKL 189
Query: 272 IRLIKPLQRLAESRGIA---LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + + +L +S G+ L AIDEVHC S+WGHDFR DY L+VL+ F
Sbjct: 190 AKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKG------- 242
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P++ LTATAT V +D+ K L + F F R NL + V
Sbjct: 243 --VPILGLTATATSNVLDDVKKMLGIPVAIVF-RAGFNRANLNYKV 285
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + +AK L G++A Y+A + H ++ +++V+VAT+AFGMG
Sbjct: 313 IIYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMG 372
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ P+S+E YYQE+GRAGRDG A C+LY +S + S ++QT
Sbjct: 373 IDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFK-QSSMIQQEQTG 431
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
A L + RY +T CR L E+F E + CQ
Sbjct: 432 IAN--LYNMVRYASDTVTCRRVKLAEHFEEAWEPSWCQ 467
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 15/220 (6%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+ E +L++ FG+ + Q+ + L+ DCLV+ TG GKSLC+QIPALL +
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGL 67
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQP-DNKVEQKA--LRGMYSIIYVCPETVI 272
VV+SPLISLM DQ +L +GV A L S Q + ++E A G ++Y+ PE ++
Sbjct: 68 TVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L L LA + L A+DE HC+S+WGHDFRP+Y L LR+ F A +P
Sbjct: 128 -LDNFLDHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPA---------LP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
MALTATA R+DI++ L ++ ++SF RPN+R+
Sbjct: 177 FMALTATADDTTRQDIIRLLGLNDPL-IQISSFDRPNIRY 215
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + A L G+ AAAY+A L + V +F + L++VVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L+ + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKC 672
L D R+ +N CR +L+ YFGE E C
Sbjct: 357 AG--QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-RQEPC 397
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 128/234 (54%), Gaps = 22/234 (9%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK-- 214
W +V LK F + Q EA++ L+ D +L TG GKSLC+Q+PA++ G
Sbjct: 503 WSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGAS 562
Query: 215 --VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ-----KALRGMYSIIYVC 267
V +VISPL+SLM DQ L K + + L QP ++ Q A + ++YV
Sbjct: 563 RGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVT 622
Query: 268 PETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE + + + L+ L E + +A IDE HCVS WGHDFRPDY++L +LR+ +
Sbjct: 623 PEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQG--- 679
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
IP MALTATA V++DI+ +L M + + +SF RPNL + +K K
Sbjct: 680 ------IPFMALTATANEIVKKDIINTLRMENCLE-LKSSFNRPNLFYEIKPKK 726
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 516 IIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
IIY +R +A L +G+KA Y+A L K + +R+ E+ +++VATIAFGM
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSE 631
G+DK +VR +IH+ +P+SLE YYQE GRAGRDG A C++ Y + + L+ S +
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGD 865
Query: 632 DQTKQAYR-MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+TK+ R ML ++ N + CR K ++ YFGE+F C+
Sbjct: 866 AETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDKVHCR 908
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 166/356 (46%), Gaps = 46/356 (12%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++A +A D ++ TG GKSLC+Q+PAL +
Sbjct: 75 WSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L S V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+ + A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+I L+ LTATAT V +D K L + K F SF RPNL + V+ K SS + ++
Sbjct: 247 -NISLIGLTATATNHVLKDAQKILCVEKCLTFT-ASFNRPNLYYEVRQ-KPSSAEDFIEN 303
Query: 389 FCQLID---------IYTKKKKTGEKEKSAIPQ------------DLDDQSDTSSSSSMS 427
LI+ IY +K E+ ++ + + +D++ + S +
Sbjct: 304 IANLINGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSAN 363
Query: 428 EESRISPNIGDGY-YDDEDVG---NSPMGKEMSVEFLENDSV--DDWDVACGEFYG 477
E + + G D DV + M K M + E+ DDW C +YG
Sbjct: 364 ELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYG 419
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L GV+A Y+A++ +VHT++ N+L+VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
Q Y M+S C N S CR ++ ++F E ++ + C
Sbjct: 438 QKLYEMVSYC----QNISKCRRALIAQHFDEVWNADAC 471
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 126/217 (58%), Gaps = 13/217 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L + FGH + Q + + L D VL +TG GKS+C+Q+P+LL + VV+SPLIS
Sbjct: 219 LNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPLIS 278
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI--IYVCPETVIRLIKPLQRLA 282
LM+DQ + L G+ A L + +Q A M+ I IY+ PE V K L+ L
Sbjct: 279 LMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVA-NNMHRIRFIYMSPEMVTSQ-KGLELLT 336
Query: 283 ESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
R I+L AIDE HCVS+WGHDFR YR L+ +R +S +IP++ALTATAT
Sbjct: 337 SCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRN-------RSDLCNIPMIALTATAT 389
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
++VR+D++ +L + K TSF R NL SV SK
Sbjct: 390 VRVRDDVIANLRLRKPL-ITTTSFDRKNLYISVHSSK 425
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY T++ + L GV++A Y+A L K+Q + HT+F +K+ +VAT+AF
Sbjct: 447 GPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAF 506
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED 632
GMGIDK +VR +IHYG P ++E+YYQE GRAGRDG + C ++ + T+ R+
Sbjct: 507 GMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQ 566
Query: 633 QTKQAYRMLSDCFR---YGMNTSCCRAKILVEYFGEDFS 668
Q ++ L+ R + T CR L+++F ++
Sbjct: 567 QKEEVVENLTMMLRQLELVLTTVGCRRYQLLKHFDPSYA 605
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 19/246 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++ +A D ++ TG GKSLC+Q+PAL +
Sbjct: 75 WFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L + V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+ + A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+ LM LTATAT V +D+ K L + K F SF RPNL + V+ K SS + +D
Sbjct: 247 -NASLMGLTATATNHVLKDVQKILCVGKCLTFT-ASFNRPNLFYEVRQ-KPSSAEDFTED 303
Query: 389 FCQLID 394
+LI+
Sbjct: 304 IVKLIN 309
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 16/196 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPLEDGLT-----------IIYVPTRKETLSIAKYLCGFGV 537
SF R +L + ++ S ++ ED + IIY ++K++ I L G+
Sbjct: 280 SFNRPNLFYEVRQKPSSAEDFTEDIVKLINGRYKGQSGIIYCFSQKDSEQITISLQKLGI 339
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A Y+A++ +VHT++ N+L+VVVAT+AFGMGIDK +VR +IH+ +S+E YY
Sbjct: 340 HAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 399
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRA 656
QE+GRAGRD ADC+LY + + E+ +Q Y M+S C N S CR
Sbjct: 400 QESGRAGRDDSRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC----QNVSKCRR 455
Query: 657 KILVEYFGEDFSHEKC 672
++ ++F E ++ + C
Sbjct: 456 VLIAQHFDEVWNADAC 471
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 132/230 (57%), Gaps = 16/230 (6%)
Query: 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
+G+D ++ LK FG + ++ QK+ + + L HD VL TG+GKSLC+Q+PA++
Sbjct: 227 LGADMNKELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVIL 286
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGS--GQP-DNKVEQKALRGMYSI--IYVC 267
V VV+SPL SL+ DQ K+ + G+ L + G P K+ + G SI +YV
Sbjct: 287 PGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVT 346
Query: 268 PETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE + RL L +A F IDE HCVS+WGHDFRPDY +LS LRE + AN
Sbjct: 347 PEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKY-ANP- 404
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P++ALTATAT ++ D L M + +K ++SF R NL++ +
Sbjct: 405 -----PVPIIALTATATPKIVTDARDHLKM-QNSKLFISSFVRDNLKYDL 448
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE ++ L G+ A Y+A L + V + NK +V+ ATIAFGMG
Sbjct: 473 IVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMG 532
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRR--SEDQ 633
IDK +VR +IHY P+S+E YYQE GRAGRDG + C++ L S + RR E
Sbjct: 533 IDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLM---LYSYHDSIRLRRMIEEGN 589
Query: 634 TKQAYRMLS-----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
T R + Y N S CR K+LVE+FGE + + C+
Sbjct: 590 TTTGVRSMHLNNVLQVVAYCENVSVCRRKMLVEHFGEVYDEQSCR 634
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 126/246 (51%), Gaps = 19/246 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++ +A + ++ TG GKSLC+Q+PAL +
Sbjct: 75 WSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L + V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+R A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+ L+ LTATAT V D K L + K F SF RPNL + V+ K S+ + +D
Sbjct: 247 -NASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNRPNLYYEVRQ-KPSNTEDFIED 303
Query: 389 FCQLID 394
+LI+
Sbjct: 304 IVKLIN 309
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 16/196 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPLEDGLT-----------IIYVPTRKETLSIAKYLCGFGV 537
SF R +L + ++ S ++ +ED + IIY ++K++ + L G+
Sbjct: 280 SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI 339
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A AY+A+L VH ++ N+++VVVAT+AFGMGIDK +VR +IH+ +S+E YY
Sbjct: 340 HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 399
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRA 656
QE+GRAGRD ADC+LY + + E+ +Q Y M+S C N S CR
Sbjct: 400 QESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC----QNISKCRR 455
Query: 657 KILVEYFGEDFSHEKC 672
++ ++F E ++ E C
Sbjct: 456 VLMAQHFDEVWNSEAC 471
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEA--LSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K +E+ ++ + D V TG+GKSLC+Q+PALL
Sbjct: 11 DPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK 70
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-------RGMYSIIYV 266
+ +V+SPLI+L+ DQ L V L S + E+K L + I+Y+
Sbjct: 71 GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKL--SAQERKELLADLEREKPQTKILYI 128
Query: 267 CPETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE +P L L ++ +DE HCVS+WGHDFRPDY RL LR G
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG---- 184
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK-TSSRA 383
P +ALTATAT QV+ED+ +LH+ K T FR NL + V+ + S
Sbjct: 185 -----HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPY 239
Query: 384 SYKKDFC 390
KDFC
Sbjct: 240 GNLKDFC 246
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y TR+ +A L GV A AY+A L S+ V ++ E K+ V+VATI+F
Sbjct: 260 GCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISF 319
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-------- 624
GMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + + +
Sbjct: 320 GMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEV 379
Query: 625 --LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
L +R + +A M D CR + +YFG+
Sbjct: 380 AKLQEKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYFGD 422
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 17/230 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
+G+ + + Q E ++ + D + T +GKSLCFQIPAL K ++ISPLISLM D
Sbjct: 25 YGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLMED 84
Query: 229 QCSKLSKHGVTACFLGSGQPDNKVEQK--ALRGMYSIIYVCPETVIRLIKPLQRLAESRG 286
Q L K G+++C S +NK + + ++ Y IYV PE+V+ L + +L + +G
Sbjct: 85 QRLILEKLGISSCCYNSN-VENKAQMRKDIMQFKYKFIYVSPESVVHLKDLIVKLEDFQG 143
Query: 287 IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRE 346
I+L AIDE HC+S +G DFR YR ++ +E ++P++ALTATAT V +
Sbjct: 144 ISLIAIDEAHCISAYGFDFRTAYREITFFKEILP---------NVPILALTATATNIVAK 194
Query: 347 DILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
DI K L + K + + SF RPNL V+ +K+ + A+ D +I+ Y
Sbjct: 195 DICKVLQL-KTNEPIKASFDRPNLYLEVR-TKSKNPAN---DIVPIINKY 239
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Query: 489 SFERTDLL-------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R +L PA + + + IIY T+KET IA L V
Sbjct: 211 SFDRPNLYLEVRTKSKNPANDIVPIINKYPNQSVIIYCLTKKETQKIADILTVHKVVCGI 270
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L + HT F NK+++VVATIAFGMGI+K +VR +IHYG P+++E YYQE G
Sbjct: 271 YHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVRVVIHYGAPKNIEGYYQEIG 330
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG + C + N + + + K +L +Y + CR KI
Sbjct: 331 RAGRDGEKSYCYAFYNFQDFMIQRRFISQNNNPNYQKTQLALLEQMKKY-VTLRTCRRKI 389
Query: 659 LVEYFGEDFSHEKC 672
L+EYF E+ + EKC
Sbjct: 390 LLEYFDEE-TKEKC 402
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-TGKV 215
W +V L + F + Q EA++A L D VL TG GKSLC+Q+PA++ +GK
Sbjct: 662 WSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKT 721
Query: 216 ---VVVISPLISLMHDQCSKLSKHGVTACFL---GSGQPDNKVEQKALRGMYSIIYVCPE 269
+VISPLISLM DQ L + A G+ + + + G+ ++Y+ PE
Sbjct: 722 HGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPE 781
Query: 270 TVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ + + + RL +A +DE HCVS WGHDFRPDY+ L + +
Sbjct: 782 MISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYP------ 835
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
DIP++ALTATA+ QVR DI+ +L + K F+ SF R NL + V
Sbjct: 836 ---DIPMIALTATASEQVRMDIIHNLEL-KEPVFLKQSFNRTNLYYEV 879
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 13/199 (6%)
Query: 488 RSFERTDL---LNKPA-----ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
+SF RT+L +NK E ++ ++ IIY ++K + + G+K
Sbjct: 868 QSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKC 927
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
A Y+A + + V + ++++V+ AT+AFGMGIDK +VR + H+ P++LE YYQE
Sbjct: 928 AYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQE 987
Query: 600 AGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCC 654
GRAGRDG+ + C+ Y ++ +M T++ ++ D+ + + L Y N + C
Sbjct: 988 TGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCDNVTDC 1047
Query: 655 RAKILVEYFGEDFSHEKCQ 673
R K+++ YF EDF + C
Sbjct: 1048 RRKLVLSYFNEDFDSKLCH 1066
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 125/246 (50%), Gaps = 19/246 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++ +A + ++ TG GK LC+Q+PAL +
Sbjct: 75 WSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L + V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+R A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+ L+ LTATAT V D K L + K F SF RPNL + V+ K S+ + +D
Sbjct: 247 -NASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNRPNLYYEVRQ-KPSNTEDFIED 303
Query: 389 FCQLID 394
+LI+
Sbjct: 304 IVKLIN 309
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 16/196 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPLEDGLT-----------IIYVPTRKETLSIAKYLCGFGV 537
SF R +L + ++ S ++ +ED + IIY ++K++ + L G+
Sbjct: 280 SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLRNLGI 339
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A AY+A+L VH ++ N+++VVVAT+AFGMGIDK +VR +IH+ +S+E YY
Sbjct: 340 HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 399
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRA 656
QE+GRAGRD ADC+LY + + E+ +Q Y M+S C N S CR
Sbjct: 400 QESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC----QNISKCRR 455
Query: 657 KILVEYFGEDFSHEKC 672
++ ++F E ++ E C
Sbjct: 456 LLMAQHFDEVWNSEAC 471
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 18/229 (7%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
G W + +LK+ F + Q+ A++A ++ D +V+ +TG GKSLC+Q+PALL
Sbjct: 90 GFPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLAN 149
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALR--GMYSIIYVCP 268
+ +V+SPLISL+ DQ +L G+ + L S + +VE + ++YV P
Sbjct: 150 GLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTP 209
Query: 269 ETVIRLIKPLQRLAESRGIA---LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
E + + K + +L +S + L AIDEVHC S+WGHDFR DY L+VL+ F
Sbjct: 210 EKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKG---- 265
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P++ LTATAT V +D+ L + F F R NL++ V
Sbjct: 266 -----VPILGLTATATSNVLDDVKDMLGIQAALTF-RAGFNRSNLKYKV 308
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 3/158 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + +AK L G+KA Y+A + H + K++V+VAT+AFGMG
Sbjct: 336 IIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMG 395
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IH+ P+S+E YYQE+GRAGRDG A C+LY L+ + Q +
Sbjct: 396 IDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLAD---IFKQSSMVQQER 452
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ L + RY ++S CR L E+F E + CQ
Sbjct: 453 TGIQNLYNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQ 490
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 18/226 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K+ L + FG +S K Q++ + + L+ D + + TG GKSLC+Q+P + +V+++
Sbjct: 3 KLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIV 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM--YSIIYVCPETVIRLIKP 277
SPL+SLM DQ +L G + + + Q L + Y +Y+ PE L P
Sbjct: 63 SPLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEA---LQSP 119
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L++L +S I+LF IDE HC+S+WGHDFRPDY +L LR+ G P++A
Sbjct: 120 YVLEKL-KSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHP---------PVLA 169
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
LTATAT + +D++ L + + L S RPN+ V+++ ++
Sbjct: 170 LTATATKETLQDVMNLLELQHAVRH-LNSVNRPNIALRVENAADTA 214
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-----FGVKAAAYNASLPKSQLRRVH 555
+R+ L E L+ G I+Y PTRK AK L G +A Y+ L +
Sbjct: 218 DRVIQLVENLQ-GPGIVYCPTRK----WAKELAGEIKSKTSSRADFYHGGLESGDRILIQ 272
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+F N+L+V+ T AFGMG+DK ++R +IH+ PQ+ EA+ QE GRAGRDG
Sbjct: 273 QQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGRDG 324
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 117/216 (54%), Gaps = 13/216 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L++ +G+ + Q E + LA DCLV+ TG GKS+CFQ+PALL + +V+SPL++
Sbjct: 11 LRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLTLVVSPLVA 70
Query: 225 LMHDQCSKLSKHGVTACFLGS--GQPDNK-VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L + + A L S +P+ K V + + ++Y+ PET+ L +P+ L
Sbjct: 71 LMEDQVQSLRRQNLPAACLHSQLSRPERKQVLYQLGQQQLKLLYLSPETL--LSEPVWNL 128
Query: 282 AESRGIALFAI--DEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ L I DE HC+ +WG FRP YRRL LR G + K IPL A TAT
Sbjct: 129 LRQPQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRD-----KGQIPLAAFTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A Q + I++ L++ F ++ RP L VK
Sbjct: 184 ADRQQQNLIVEGLNLRSPECFQVSP-HRPQLHLKVK 218
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 461 ENDSVDDWDVACGEFYGHSPHRDR-DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYV 519
+N V+ ++ E + SPHR + ++ + R +L+ E GL IYV
Sbjct: 189 QNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLKHLQESGL--IYV 246
Query: 520 PTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL 579
TR +++A++L G + AY+ L Q R++ ++ ++ VV T AFG+GIDK
Sbjct: 247 RTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGIDKP 306
Query: 580 NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623
+ R ++HY P L Y QE GRAGRD A+C+ L S PT
Sbjct: 307 DTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECL---TLVSEPT 347
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 22/227 (9%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVISPLIS 224
G+ + + Q+ A+ L+ L++ TG+GKSLC+Q+PALL + + +V+SPL+S
Sbjct: 493 LGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLS 552
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVI----RLIKP 277
LM DQ S L AC L SG + E +K ++ V PE ++ R
Sbjct: 553 LMDDQVSDLPSCLKAAC-LHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGS 611
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPLMAL 336
L + A+ IA IDEVHC+S+W H+FRP Y R+ VLRE+ G + L
Sbjct: 612 LPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRC---------FLGL 662
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
TATAT D+ + L ++ + ++ NL SV + S +A
Sbjct: 663 TATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQA 709
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
CG A AY+A + + RRV F L +VVAT+AFGMG+D+ +VR ++H G P S
Sbjct: 757 CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPS 816
Query: 593 LEAYYQEAGRAGRDGHLADCVLY 615
E+Y Q GRAGRDG A C L+
Sbjct: 817 FESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL +G+ S ++ Q +A+ L +++ TG+GKSLC+QIPA++ + +V+S
Sbjct: 257 LTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVS 316
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE--QKALRGMYSIIYVCPETVIRLIKPL 278
PL+SLM DQ L S +P+ E +K G+ +++V PE ++ ++ L
Sbjct: 317 PLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLN-VEFL 375
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
S ++L +DE HCVS+W H+FRP Y RL
Sbjct: 376 SMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRL 409
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 63/100 (63%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y + ET I+KYL + A Y++ LP R+ F NK+ VVVAT+AFGMG
Sbjct: 490 IVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMG 549
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+DK +V +IH+ P S+E Y QE GRAGRDG L+ C L+
Sbjct: 550 LDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLF 589
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 29/255 (11%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVISPL 222
+ GH + + Q+ A+ L+ L++ TG+GKSLC+Q+PALL + + +V+SPL
Sbjct: 474 EQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPL 533
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRL--IKP 277
+SLM DQ S L AC + SG + E QK ++ + PE ++ + P
Sbjct: 534 LSLMDDQVSGLPPCLKAAC-IHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPP 592
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPLMAL 336
+L +A IDE HC+S+W H+FRP Y R+ VLRE G + + L
Sbjct: 593 AAQLPP---VAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHC---------FLGL 640
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK----KDFCQL 392
TATAT + D+ + L +++ + NL SV + + +A K F L
Sbjct: 641 TATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNL 700
Query: 393 --IDIYTKKKKTGEK 405
I IY +++ E+
Sbjct: 701 DSIIIYCNRREDTER 715
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 28/149 (18%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGL--TIIYVPTRKETLSIAK---------Y 531
DRDTD++ L++LQ L IIY R++T IA +
Sbjct: 681 DRDTDQAL------------LTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAW 728
Query: 532 LCGFGVKAA-----AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH 586
+ G G +A AY+A + + RRV F + +L VVVAT+AFGMG+D+ +VR ++H
Sbjct: 729 VPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLH 788
Query: 587 YGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
G P S E+Y Q GRAGRDG A C L+
Sbjct: 789 LGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKA----AAYNASLPKSQLRRVHTEFHEN---KLE 564
DG II+ T+K+ I + L + A Y + + R+++ + N K
Sbjct: 1415 DGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEE-RQMNFDAFRNANGKTR 1473
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+++AT AFG+GI+ + VR ++HYG P S Y QE GRAGRDG A L+
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALF 1524
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 96/233 (41%), Gaps = 41/233 (17%)
Query: 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----------VVVVISPL 222
SLK FQ S L + + + TG GKSL F IPAL+ K V +V+ P+
Sbjct: 1192 SLKQFQSVYFSL-LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPM 1250
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIY--VCPETVIRLIKP 277
+SL D ++++ G+ C G+ V + L ++ + Y + +R +
Sbjct: 1251 MSLRQDMMLRVNEKGLLVC-SGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFES 1309
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL---- 333
L L +A IDE H + G +R R S L + +L S F L
Sbjct: 1310 LATLGR---LARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPLHLLSATFPRQLEMVA 1365
Query: 334 --------MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
L T+T RE+I LH T+F+L +LR +K +K
Sbjct: 1366 RQTFCTNFYVLRETST--ARENIFYFLHPYDNTEFLL------DLRTLMKRTK 1410
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKA----AAYNASLPKSQLRRVHTEFHEN---KLE 564
DG II+ T+K+ I + L + A Y + + R+++ + N K
Sbjct: 1596 DGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEE-RQMNFDAFRNANGKTR 1654
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+++AT AFG+GI+ + VR ++HYG P S Y QE GRAGRDG A L+
Sbjct: 1655 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALF 1705
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----------VVVVISPL 222
SLK FQ S L + + + TG GKSL F IPAL+ K V +V+ P+
Sbjct: 1373 SLKQFQSVYFSL-LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPM 1431
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIY--VCPETVIRLIKP 277
+SL D ++++ G+ C G+ V + L ++ + Y + +R +
Sbjct: 1432 MSLRQDMMLRVNEKGLLVC-SGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFES 1490
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL---- 333
L L +A IDE H + G +R R S L + +L S F L
Sbjct: 1491 LATLGR---LARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPLHLLSATFPRQLEMVA 1546
Query: 334 --------MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
L T+T RE+I LH T+F+L +LR +K +K
Sbjct: 1547 RQTFCTNFYVLRETST--ARENIFYFLHPYDNTEFLL------DLRTLMKRTKVFEGDGR 1598
Query: 386 KKDFCQ 391
FC+
Sbjct: 1599 AIIFCR 1604
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DED1 PE=3 SV=1
Length = 627
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+GLT+I+V T++ S+ +L G KA A + + + R + F + ++VAT
Sbjct: 416 EGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAV 475
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
G+D NV +I++ P ++ Y GR GR G+ + N
Sbjct: 476 AARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFN 521
>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP1 PE=3 SV=1
Length = 604
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
DGLT+++V T++ + +L KA A + +++ R F ++VAT
Sbjct: 395 DGLTLVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVATAV 454
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-----LP 626
G+D NV +I+Y P ++ Y GR GR G++ + N +SM L
Sbjct: 455 AARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMDLL 514
Query: 627 SRRSEDQTKQAYRMLSDCFRYG 648
+ +++ + M+ D R+G
Sbjct: 515 TEANQEVPQFLVNMVQDSMRFG 536
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 508 EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV 567
EP E I++V T++ T IA+ L G AAA + +P++Q R T + ++++V
Sbjct: 248 EPFE--AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPS 627
AT G+D + +++Y P E+Y GR GR G +++ + + L
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365
Query: 628 RRSEDQT 634
++ QT
Sbjct: 366 EKATRQT 372
>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0669 PE=1 SV=1
Length = 367
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+++ T+++T +A L G KA A + L +SQ +V F + K+ +++AT G
Sbjct: 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
ID ++ +I+Y PQ+ E+Y GR GR G
Sbjct: 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAG 333
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DED1 PE=3 SV=1
Length = 672
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
E+GLTI++ T++ ++A YL G A A + + + + F ++VAT
Sbjct: 442 ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATA 501
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
G+D NV +I+Y P ++ Y GR GR G++ + N
Sbjct: 502 VAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFN 548
>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4
PE=1 SV=2
Length = 724
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 489 QRLAAEFLKSNYLF---VAVGQVGGAC----RDVQQTVLQVGQFSK-REKLVEILRNIGD 540
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 541 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA 600
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 601 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 648
>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis
GN=DDX4 PE=2 SV=1
Length = 725
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 490 QRLAAEFLKSNYLF---VAVGQVGGAC----RDVQQTVLQVGQFSK-REKLVEILRNIGD 541
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 542 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 601
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 602 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 649
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQ 229
G++ L QK ++ LA D + A TGSGK+ F +P L +MHD
Sbjct: 308 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPI------------LAHMMHD- 354
Query: 230 CSKLSKHGVTA-CF 242
G+TA CF
Sbjct: 355 -------GITASCF 361
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TII+V T+ TL +++ L +G +AA N + +S + + + +L++++AT
Sbjct: 247 TIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAAR 306
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
G+D + +I+Y P E+Y GR GR G +L+
Sbjct: 307 GLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFV 348
>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp28 PE=3 SV=1
Length = 662
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 486 TDRSFERTDLLNKPAERLSMLQEPLEDGL----TIIYVPTRKETLSIAKYLCGFGVKAAA 541
DR +R ++++ +++ ++E LE II+V ++ +IAK L G A
Sbjct: 486 VDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVT 545
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
+ S + Q R + +++VAT G GID NV +++Y +S+E Y G
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIG 605
Query: 602 RAGRDGHLADCVLY 615
R GR G + +
Sbjct: 606 RTGRAGKSGTAITF 619
>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1
Length = 658
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L D LT+++V T+K S+ +L G + + +
Sbjct: 423 LDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NVR +I++ P +E Y GR GR G+L +
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 542
Query: 616 ANLSSM 621
N +M
Sbjct: 543 FNEKNM 548
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ded1 PE=1 SV=1
Length = 636
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +GLT+I+V T++ ++ YL A + + + + R F +
Sbjct: 421 LDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGR 480
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV +I+Y P ++ Y GR GR G+ V + N
Sbjct: 481 TSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
GLT+I+V T++ + +L KA A + +++ R + F N +++VAT
Sbjct: 412 GLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVA 471
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
G+D NV +I+Y P ++ Y GR GR G+ + N
Sbjct: 472 ARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFN 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,718,953
Number of Sequences: 539616
Number of extensions: 10569334
Number of successful extensions: 34824
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 32587
Number of HSP's gapped (non-prelim): 2268
length of query: 679
length of database: 191,569,459
effective HSP length: 124
effective length of query: 555
effective length of database: 124,657,075
effective search space: 69184676625
effective search space used: 69184676625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)