Query 005742
Match_columns 679
No_of_seqs 414 out of 2984
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 13:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 5E-68 1.1E-72 591.4 44.1 399 153-678 440-865 (1195)
2 COG0514 RecQ Superfamily II DN 100.0 1.3E-64 2.8E-69 535.6 36.0 386 160-678 4-398 (590)
3 TIGR00614 recQ_fam ATP-depende 100.0 7.7E-64 1.7E-68 544.2 40.9 387 164-678 2-403 (470)
4 PRK11057 ATP-dependent DNA hel 100.0 3.8E-62 8.2E-67 544.1 42.9 391 156-679 8-404 (607)
5 TIGR01389 recQ ATP-dependent D 100.0 3.1E-61 6.7E-66 539.1 41.3 384 162-678 2-392 (591)
6 KOG0351 ATP-dependent DNA heli 100.0 2E-60 4.4E-65 532.2 32.3 396 157-678 248-659 (941)
7 KOG0331 ATP-dependent RNA heli 100.0 2.3E-60 5E-65 493.8 28.7 337 154-621 95-450 (519)
8 KOG0352 ATP-dependent DNA heli 100.0 3.1E-58 6.6E-63 450.4 28.1 405 158-675 4-430 (641)
9 KOG0353 ATP-dependent DNA heli 100.0 1.1E-57 2.4E-62 440.1 26.1 398 153-678 74-524 (695)
10 KOG0330 ATP-dependent RNA heli 100.0 2E-57 4.3E-62 441.2 24.1 334 156-622 67-410 (476)
11 PTZ00110 helicase; Provisional 100.0 6.4E-55 1.4E-59 479.5 37.7 332 156-621 136-486 (545)
12 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-54 2.4E-59 436.1 29.6 344 156-622 251-627 (673)
13 COG0513 SrmB Superfamily II DN 100.0 7.7E-54 1.7E-58 466.2 31.1 333 156-619 35-380 (513)
14 PRK04837 ATP-dependent RNA hel 100.0 1E-52 2.2E-57 453.1 30.5 330 156-619 14-362 (423)
15 KOG0328 Predicted ATP-dependen 100.0 9.2E-53 2E-57 391.5 25.1 342 143-621 24-375 (400)
16 KOG0342 ATP-dependent RNA heli 100.0 3.2E-53 7E-58 424.3 23.1 342 154-624 86-442 (543)
17 PRK10590 ATP-dependent RNA hel 100.0 2.9E-52 6.4E-57 452.2 31.3 331 156-620 7-353 (456)
18 PLN00206 DEAD-box ATP-dependen 100.0 6.4E-52 1.4E-56 454.7 34.2 330 156-619 127-475 (518)
19 KOG0336 ATP-dependent RNA heli 100.0 3.6E-53 7.7E-58 412.6 21.2 358 132-621 201-574 (629)
20 KOG0338 ATP-dependent RNA heli 100.0 3E-53 6.5E-58 424.2 19.9 336 156-621 187-535 (691)
21 PRK11634 ATP-dependent RNA hel 100.0 1.9E-51 4E-56 455.4 33.2 331 156-620 12-353 (629)
22 PRK11776 ATP-dependent RNA hel 100.0 1.9E-51 4.2E-56 448.0 32.3 329 156-620 10-350 (460)
23 KOG0345 ATP-dependent RNA heli 100.0 1.1E-51 2.3E-56 410.2 27.0 339 156-623 12-368 (567)
24 KOG0340 ATP-dependent RNA heli 100.0 4.9E-52 1.1E-56 399.0 23.2 337 157-622 14-364 (442)
25 PRK04537 ATP-dependent RNA hel 100.0 2.3E-51 4.9E-56 452.6 31.8 332 156-620 15-365 (572)
26 KOG0341 DEAD-box protein abstr 100.0 3E-52 6.6E-57 403.5 20.7 341 142-621 166-530 (610)
27 KOG0348 ATP-dependent RNA heli 100.0 6.1E-52 1.3E-56 417.1 23.4 372 156-622 142-557 (708)
28 PRK11192 ATP-dependent RNA hel 100.0 8.2E-51 1.8E-55 440.5 33.2 331 156-620 7-353 (434)
29 PRK01297 ATP-dependent RNA hel 100.0 3.8E-50 8.3E-55 438.8 38.7 331 156-619 93-442 (475)
30 KOG0335 ATP-dependent RNA heli 100.0 2.7E-51 5.9E-56 418.4 23.6 334 156-617 80-442 (482)
31 KOG0347 RNA helicase [RNA proc 100.0 4.2E-50 9E-55 405.1 23.6 363 156-623 187-574 (731)
32 KOG0343 RNA Helicase [RNA proc 100.0 5.6E-50 1.2E-54 404.2 22.1 338 155-624 74-427 (758)
33 TIGR03817 DECH_helic helicase/ 100.0 3.6E-48 7.8E-53 437.6 34.8 351 151-619 15-386 (742)
34 KOG0326 ATP-dependent RNA heli 100.0 8.7E-50 1.9E-54 377.6 17.7 331 158-623 93-433 (459)
35 PTZ00424 helicase 45; Provisio 100.0 1.9E-48 4E-53 419.2 29.7 330 156-620 34-375 (401)
36 KOG0339 ATP-dependent RNA heli 100.0 2.1E-48 4.6E-53 388.7 26.1 338 153-622 226-578 (731)
37 KOG0346 RNA helicase [RNA proc 100.0 1.4E-47 2.9E-52 377.5 24.7 335 156-622 25-413 (569)
38 KOG0334 RNA helicase [RNA proc 100.0 7E-47 1.5E-51 411.8 21.6 336 156-621 371-722 (997)
39 COG1111 MPH1 ERCC4-like helica 100.0 3.9E-46 8.6E-51 376.6 17.9 448 171-643 13-507 (542)
40 KOG0350 DEAD-box ATP-dependent 100.0 2.2E-45 4.8E-50 367.5 21.2 347 161-624 148-545 (620)
41 KOG0332 ATP-dependent RNA heli 100.0 1.3E-44 2.9E-49 349.7 23.1 330 156-620 96-444 (477)
42 PRK13767 ATP-dependent helicas 100.0 3.3E-43 7.2E-48 405.3 35.6 336 156-616 17-395 (876)
43 KOG4284 DEAD box protein [Tran 100.0 2.5E-43 5.4E-48 361.4 25.1 338 157-620 32-380 (980)
44 PRK02362 ski2-like helicase; P 100.0 1.5E-42 3.2E-47 396.9 32.0 336 156-619 7-397 (737)
45 KOG0327 Translation initiation 100.0 6.1E-44 1.3E-48 348.9 16.9 331 156-621 32-372 (397)
46 KOG0344 ATP-dependent RNA heli 100.0 2.5E-43 5.3E-48 361.9 19.2 354 142-624 128-500 (593)
47 COG1201 Lhr Lhr-like helicases 100.0 1.2E-41 2.7E-46 373.7 32.4 335 156-618 7-361 (814)
48 TIGR00580 mfd transcription-re 100.0 6.8E-41 1.5E-45 381.3 36.1 315 159-620 438-771 (926)
49 KOG0337 ATP-dependent RNA heli 100.0 3.7E-43 8.1E-48 344.7 14.1 337 156-625 27-374 (529)
50 PRK00254 ski2-like helicase; P 100.0 6.1E-41 1.3E-45 382.6 31.1 331 156-620 7-389 (720)
51 PRK10689 transcription-repair 100.0 5.1E-40 1.1E-44 382.1 34.8 312 161-619 589-919 (1147)
52 PRK10917 ATP-dependent DNA hel 100.0 4.2E-39 9E-44 362.9 34.8 308 163-617 252-587 (681)
53 PRK01172 ski2-like helicase; P 100.0 5.6E-39 1.2E-43 365.1 33.1 331 156-620 7-379 (674)
54 TIGR00643 recG ATP-dependent D 100.0 1.9E-38 4.2E-43 355.4 35.1 314 160-617 223-564 (630)
55 PRK09751 putative ATP-dependen 100.0 7.2E-39 1.6E-43 373.6 29.0 313 193-616 1-382 (1490)
56 KOG0354 DEAD-box like helicase 100.0 8E-40 1.7E-44 350.4 19.3 422 172-620 61-530 (746)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5E-38 1.1E-42 347.3 33.4 324 163-618 6-390 (844)
58 PHA02558 uvsW UvsW helicase; P 100.0 1.4E-36 3E-41 332.2 30.8 328 172-625 113-458 (501)
59 COG1202 Superfamily II helicas 100.0 1E-36 2.3E-41 309.7 25.3 339 154-622 198-556 (830)
60 PRK14701 reverse gyrase; Provi 100.0 9.4E-37 2E-41 362.5 26.6 324 159-614 66-451 (1638)
61 TIGR01587 cas3_core CRISPR-ass 100.0 2.4E-35 5.2E-40 312.1 28.9 300 190-620 1-337 (358)
62 PRK09401 reverse gyrase; Revie 100.0 2E-35 4.3E-40 344.6 29.4 308 160-605 68-430 (1176)
63 COG1204 Superfamily II helicas 100.0 9.5E-36 2.1E-40 332.5 25.4 335 157-622 16-411 (766)
64 PHA02653 RNA helicase NPH-II; 100.0 2.8E-35 6.2E-40 324.4 27.1 308 176-621 167-516 (675)
65 PRK13766 Hef nuclease; Provisi 100.0 1E-34 2.3E-39 336.5 32.8 436 172-637 14-499 (773)
66 KOG0329 ATP-dependent RNA heli 100.0 2.3E-36 5E-41 277.9 13.4 303 156-625 48-361 (387)
67 COG1205 Distinct helicase fami 100.0 1.9E-34 4.1E-39 326.8 31.1 336 161-620 59-423 (851)
68 TIGR03158 cas3_cyano CRISPR-as 100.0 2.4E-34 5.2E-39 300.9 29.5 296 177-604 1-357 (357)
69 PRK11664 ATP-dependent RNA hel 100.0 1.8E-34 3.9E-39 326.6 26.5 303 179-623 11-343 (812)
70 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.8E-34 1E-38 322.3 27.9 303 178-622 7-339 (819)
71 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-34 4.2E-39 311.7 22.9 337 167-625 104-497 (1230)
72 TIGR00603 rad25 DNA repair hel 100.0 7.6E-34 1.6E-38 311.3 27.3 321 173-620 255-608 (732)
73 KOG0385 Chromatin remodeling c 100.0 2.4E-34 5.1E-39 301.5 20.6 399 172-615 166-593 (971)
74 PRK09200 preprotein translocas 100.0 6.6E-33 1.4E-37 306.9 31.8 380 161-620 67-542 (790)
75 PRK12898 secA preprotein trans 100.0 1.1E-32 2.4E-37 298.8 32.0 379 161-620 92-587 (656)
76 PRK04914 ATP-dependent helicas 100.0 3E-33 6.5E-38 317.3 26.8 410 173-617 152-601 (956)
77 TIGR03714 secA2 accessory Sec 100.0 1.2E-31 2.6E-36 293.9 32.8 381 161-620 59-538 (762)
78 TIGR00963 secA preprotein tran 100.0 1.8E-31 3.9E-36 290.6 31.7 375 161-620 45-518 (745)
79 TIGR01054 rgy reverse gyrase. 100.0 1.2E-31 2.6E-36 313.6 30.4 299 159-591 65-409 (1171)
80 COG1061 SSL2 DNA or RNA helica 100.0 1.5E-31 3.3E-36 286.5 27.7 337 173-617 36-389 (442)
81 PLN03142 Probable chromatin-re 100.0 3.3E-32 7.1E-37 309.6 23.2 400 173-616 169-594 (1033)
82 KOG0349 Putative DEAD-box RNA 100.0 3.5E-32 7.5E-37 267.7 16.9 318 213-618 286-614 (725)
83 PRK05580 primosome assembly pr 100.0 1.8E-30 3.9E-35 291.6 31.6 372 173-621 144-551 (679)
84 COG1197 Mfd Transcription-repa 100.0 4.3E-30 9.3E-35 286.4 28.6 337 157-648 579-934 (1139)
85 PRK11131 ATP-dependent RNA hel 100.0 4.1E-30 8.9E-35 295.3 28.2 304 177-622 78-414 (1294)
86 COG1200 RecG RecG-like helicas 100.0 5.9E-30 1.3E-34 270.8 25.6 319 155-620 245-592 (677)
87 KOG0947 Cytoplasmic exosomal R 100.0 4.3E-29 9.3E-34 267.3 31.8 374 167-619 292-723 (1248)
88 KOG0951 RNA helicase BRR2, DEA 100.0 2.5E-30 5.5E-35 283.0 22.8 335 168-625 304-708 (1674)
89 TIGR00595 priA primosomal prot 100.0 3.1E-29 6.8E-34 271.7 27.0 349 192-621 1-383 (505)
90 KOG0384 Chromodomain-helicase 100.0 8.2E-31 1.8E-35 287.8 10.4 410 172-620 369-812 (1373)
91 PRK09694 helicase Cas3; Provis 100.0 2.1E-27 4.6E-32 268.2 36.3 388 169-667 282-732 (878)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.8E-28 1.2E-32 278.9 26.2 304 180-622 74-407 (1283)
93 PRK11448 hsdR type I restricti 100.0 6.3E-28 1.4E-32 280.3 23.1 354 173-617 413-813 (1123)
94 KOG0387 Transcription-coupled 100.0 7E-28 1.5E-32 254.5 18.2 397 172-615 204-652 (923)
95 COG4581 Superfamily II RNA hel 100.0 1.5E-26 3.2E-31 258.4 25.8 362 167-620 114-538 (1041)
96 PRK13104 secA preprotein trans 100.0 7.1E-26 1.5E-30 250.2 30.8 377 161-620 71-588 (896)
97 PRK12906 secA preprotein trans 99.9 9.9E-26 2.2E-30 248.1 29.1 379 161-620 69-554 (796)
98 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-26 6.2E-31 240.1 22.5 353 168-622 125-542 (1041)
99 KOG0950 DNA polymerase theta/e 99.9 1.4E-26 3.1E-31 250.2 20.9 351 156-621 206-613 (1008)
100 COG4098 comFA Superfamily II D 99.9 6.1E-25 1.3E-29 211.7 28.8 315 173-644 97-430 (441)
101 PRK12904 preprotein translocas 99.9 5.4E-25 1.2E-29 243.3 29.6 379 161-620 70-574 (830)
102 COG4889 Predicted helicase [Ge 99.9 2.6E-26 5.6E-31 243.2 11.1 401 89-607 88-573 (1518)
103 cd00268 DEADc DEAD-box helicas 99.9 6.8E-24 1.5E-28 205.9 18.3 181 156-353 5-197 (203)
104 PRK13107 preprotein translocas 99.9 6.1E-23 1.3E-27 226.3 27.5 380 161-621 71-593 (908)
105 PRK12899 secA preprotein trans 99.9 1.6E-23 3.5E-28 231.1 19.8 126 169-299 85-228 (970)
106 KOG0389 SNF2 family DNA-depend 99.9 1.2E-23 2.6E-28 222.3 13.5 422 173-615 399-882 (941)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 6.1E-23 1.3E-27 193.1 15.1 155 175-342 1-164 (169)
108 COG1643 HrpA HrpA-like helicas 99.9 6.5E-22 1.4E-26 220.3 21.6 317 175-635 52-402 (845)
109 TIGR00348 hsdR type I site-spe 99.9 1.5E-21 3.2E-26 219.6 24.1 343 174-606 239-634 (667)
110 TIGR00631 uvrb excinuclease AB 99.9 4.8E-21 1E-25 212.8 27.2 107 512-619 442-553 (655)
111 COG1198 PriA Primosomal protei 99.9 4.8E-21 1E-25 210.4 26.7 372 172-624 197-608 (730)
112 KOG0390 DNA repair protein, SN 99.9 5.5E-22 1.2E-26 216.1 18.4 410 173-616 238-702 (776)
113 COG4096 HsdR Type I site-speci 99.9 9.9E-22 2.1E-26 211.1 19.8 345 172-622 164-548 (875)
114 KOG0949 Predicted helicase, DE 99.9 2.6E-21 5.6E-26 208.4 21.8 159 173-353 511-682 (1330)
115 KOG0922 DEAH-box RNA helicase 99.9 3.4E-21 7.3E-26 202.4 21.3 308 175-626 53-397 (674)
116 KOG0386 Chromatin remodeling c 99.9 9.1E-23 2E-27 220.8 9.4 408 172-617 393-834 (1157)
117 KOG0392 SNF2 family DNA-depend 99.9 1.4E-21 2.9E-26 214.8 16.5 411 173-615 975-1448(1549)
118 COG1203 CRISPR-associated heli 99.9 2.3E-20 5E-25 212.2 24.9 318 173-622 195-553 (733)
119 KOG4150 Predicted ATP-dependen 99.9 4.4E-21 9.6E-26 195.4 16.8 351 156-622 270-643 (1034)
120 COG1110 Reverse gyrase [DNA re 99.9 3E-20 6.6E-25 202.5 23.9 297 159-590 69-416 (1187)
121 COG0556 UvrB Helicase subunit 99.9 7.4E-20 1.6E-24 186.6 23.7 119 498-617 431-555 (663)
122 PRK05298 excinuclease ABC subu 99.9 3.8E-19 8.2E-24 199.4 30.2 106 512-618 446-556 (652)
123 PRK12900 secA preprotein trans 99.8 3.1E-19 6.8E-24 197.8 27.4 122 498-621 583-713 (1025)
124 KOG0920 ATP-dependent RNA heli 99.8 3.6E-19 7.7E-24 197.6 23.5 379 173-666 173-589 (924)
125 KOG0923 mRNA splicing factor A 99.8 2.7E-19 5.9E-24 186.0 20.8 306 173-618 265-605 (902)
126 KOG1000 Chromatin remodeling p 99.8 9.5E-19 2.1E-23 176.3 23.7 380 171-616 196-598 (689)
127 KOG0926 DEAH-box RNA helicase 99.8 1.8E-19 3.9E-24 190.5 19.1 310 180-620 263-705 (1172)
128 KOG0388 SNF2 family DNA-depend 99.8 2.3E-19 5E-24 187.1 19.3 116 498-615 1032-1148(1185)
129 PRK12326 preprotein translocas 99.8 1E-17 2.2E-22 181.0 28.8 379 161-620 67-548 (764)
130 KOG1123 RNA polymerase II tran 99.8 8.4E-19 1.8E-23 176.8 18.2 319 172-608 301-636 (776)
131 TIGR01407 dinG_rel DnaQ family 99.8 1E-17 2.2E-22 194.7 28.4 104 512-618 674-813 (850)
132 KOG0391 SNF2 family DNA-depend 99.8 7.4E-19 1.6E-23 191.5 17.3 120 496-615 1259-1381(1958)
133 KOG0924 mRNA splicing factor A 99.8 1.3E-17 2.9E-22 173.8 20.9 300 176-619 359-697 (1042)
134 PRK13103 secA preprotein trans 99.8 2.7E-17 5.8E-22 182.2 22.3 133 161-299 71-215 (913)
135 cd00079 HELICc Helicase superf 99.8 6.8E-18 1.5E-22 151.3 11.8 118 498-615 13-131 (131)
136 PF00271 Helicase_C: Helicase 99.7 3.9E-18 8.5E-23 137.6 8.7 78 530-607 1-78 (78)
137 smart00487 DEXDc DEAD-like hel 99.7 3.9E-17 8.5E-22 157.6 16.2 169 169-352 4-182 (201)
138 PRK07246 bifunctional ATP-depe 99.7 1.1E-15 2.3E-20 175.3 28.7 105 512-619 647-783 (820)
139 PRK12903 secA preprotein trans 99.7 2.3E-15 4.9E-20 165.2 29.0 377 161-620 67-540 (925)
140 KOG0953 Mitochondrial RNA heli 99.7 5.6E-17 1.2E-21 166.2 14.7 267 188-617 191-475 (700)
141 KOG4439 RNA polymerase II tran 99.7 1.1E-16 2.4E-21 167.9 17.0 415 173-615 325-852 (901)
142 KOG1002 Nucleotide excision re 99.7 3.2E-16 6.8E-21 158.1 17.3 121 497-617 620-747 (791)
143 KOG1015 Transcription regulato 99.7 3.3E-15 7.2E-20 160.8 22.8 128 488-615 1117-1271(1567)
144 PF04851 ResIII: Type III rest 99.7 2.3E-16 4.9E-21 150.4 12.6 151 173-341 3-183 (184)
145 CHL00122 secA preprotein trans 99.7 1.9E-14 4.1E-19 159.1 27.8 132 161-298 65-208 (870)
146 COG0553 HepA Superfamily II DN 99.7 6.2E-16 1.3E-20 183.8 16.0 424 172-616 337-817 (866)
147 KOG0925 mRNA splicing factor A 99.7 1.1E-14 2.4E-19 147.0 21.7 321 155-621 30-389 (699)
148 KOG0951 RNA helicase BRR2, DEA 99.7 2.4E-15 5.2E-20 166.6 18.2 313 173-623 1143-1498(1674)
149 PRK12902 secA preprotein trans 99.7 5.9E-14 1.3E-18 154.8 28.3 132 161-298 74-217 (939)
150 smart00490 HELICc helicase sup 99.6 2.8E-15 6E-20 122.2 9.1 81 527-607 2-82 (82)
151 PRK14873 primosome assembly pr 99.6 1.6E-13 3.4E-18 152.6 24.9 137 193-347 165-310 (665)
152 TIGR03117 cas_csf4 CRISPR-asso 99.6 9.2E-13 2E-17 144.5 29.8 106 512-619 470-616 (636)
153 PRK08074 bifunctional ATP-depe 99.6 2E-12 4.3E-17 151.3 32.9 108 512-619 752-893 (928)
154 cd00046 DEXDc DEAD-like helica 99.5 3.2E-14 6.9E-19 128.9 11.4 136 189-340 1-144 (144)
155 PRK11747 dinG ATP-dependent DN 99.4 1.2E-10 2.5E-15 132.3 32.3 103 512-618 534-673 (697)
156 COG1199 DinG Rad3-related DNA 99.4 3.5E-11 7.7E-16 137.6 28.2 103 512-617 479-615 (654)
157 PRK12901 secA preprotein trans 99.4 4.7E-11 1E-15 133.6 25.0 121 498-620 613-742 (1112)
158 TIGR02562 cas3_yersinia CRISPR 99.4 5.5E-11 1.2E-15 133.6 24.7 92 515-609 759-882 (1110)
159 TIGR00604 rad3 DNA repair heli 99.4 3E-10 6.5E-15 130.1 28.6 106 512-618 522-673 (705)
160 PF00176 SNF2_N: SNF2 family N 99.3 1.4E-12 3E-17 134.8 7.0 156 177-354 1-186 (299)
161 PF02399 Herpes_ori_bp: Origin 99.3 2.1E-10 4.6E-15 125.9 19.8 328 190-619 51-388 (824)
162 PF07652 Flavi_DEAD: Flaviviru 99.3 2E-11 4.3E-16 106.3 9.2 134 187-344 3-140 (148)
163 KOG1016 Predicted DNA helicase 99.2 1.1E-09 2.5E-14 116.5 17.4 120 497-616 703-844 (1387)
164 COG0610 Type I site-specific r 99.0 1E-08 2.2E-13 119.7 19.8 137 189-343 274-416 (962)
165 smart00489 DEXDc3 DEAD-like he 99.0 6.2E-09 1.4E-13 105.6 12.6 66 169-235 5-83 (289)
166 smart00488 DEXDc2 DEAD-like he 99.0 6.2E-09 1.4E-13 105.6 12.6 66 169-235 5-83 (289)
167 PF06862 DUF1253: Protein of u 98.9 5.2E-07 1.1E-11 94.8 25.9 110 512-621 300-417 (442)
168 COG0653 SecA Preprotein transl 98.9 7.7E-08 1.7E-12 106.8 20.5 121 498-620 414-546 (822)
169 TIGR00596 rad1 DNA repair prot 98.9 2.1E-09 4.5E-14 121.8 7.3 82 260-356 7-93 (814)
170 KOG0952 DNA/RNA helicase MER3/ 98.9 6.9E-10 1.5E-14 122.6 2.7 171 173-357 927-1108(1230)
171 KOG1001 Helicase-like transcri 98.8 2.8E-09 6.1E-14 118.1 4.0 102 513-614 540-643 (674)
172 PF07517 SecA_DEAD: SecA DEAD- 98.7 6.9E-08 1.5E-12 95.3 10.5 133 161-299 66-210 (266)
173 KOG0383 Predicted helicase [Ge 98.7 1.7E-09 3.7E-14 118.2 -1.5 355 173-575 295-696 (696)
174 KOG0921 Dosage compensation co 98.6 2.6E-07 5.6E-12 100.8 12.9 117 501-618 632-773 (1282)
175 KOG2340 Uncharacterized conser 98.4 1E-05 2.2E-10 84.0 15.2 109 513-621 553-670 (698)
176 PRK15483 type III restriction- 98.3 6.2E-06 1.3E-10 94.1 14.7 45 562-606 501-545 (986)
177 PF13086 AAA_11: AAA domain; P 98.3 1.3E-06 2.8E-11 86.5 6.0 63 173-235 1-75 (236)
178 KOG1802 RNA helicase nonsense 98.2 5.9E-06 1.3E-10 87.9 8.8 77 169-245 406-486 (935)
179 PF13307 Helicase_C_2: Helicas 98.1 1.3E-05 2.8E-10 74.6 8.9 104 512-617 9-148 (167)
180 COG3587 Restriction endonuclea 98.1 5.6E-05 1.2E-09 83.2 14.8 47 560-606 481-527 (985)
181 PF13872 AAA_34: P-loop contai 98.1 8.1E-05 1.8E-09 73.9 13.9 160 173-343 37-223 (303)
182 TIGR00376 DNA helicase, putati 98.0 4.3E-05 9.3E-10 86.1 11.6 75 172-246 156-234 (637)
183 KOG1803 DNA helicase [Replicat 97.9 3.2E-05 6.8E-10 82.3 8.9 63 172-234 184-250 (649)
184 PF13604 AAA_30: AAA domain; P 97.7 5.5E-05 1.2E-09 72.4 5.9 60 173-232 1-65 (196)
185 PF02562 PhoH: PhoH-like prote 97.7 5.1E-05 1.1E-09 72.0 5.3 55 171-225 2-61 (205)
186 KOG1805 DNA replication helica 97.6 0.0002 4.3E-09 80.1 8.9 122 172-299 668-809 (1100)
187 PF13245 AAA_19: Part of AAA d 97.5 0.00017 3.6E-09 57.0 5.2 53 181-233 2-62 (76)
188 PF00627 UBA: UBA/TS-N domain; 97.5 0.00018 3.9E-09 47.9 4.3 36 8-43 2-37 (37)
189 PF09848 DUF2075: Uncharacteri 97.3 0.00022 4.8E-09 75.1 5.1 90 190-300 3-97 (352)
190 smart00165 UBA Ubiquitin assoc 97.3 0.00041 8.9E-09 46.3 4.1 36 9-44 2-37 (37)
191 TIGR01448 recD_rel helicase, p 97.3 0.0014 3E-08 75.3 10.9 61 168-229 319-384 (720)
192 PRK10536 hypothetical protein; 97.3 0.00046 9.9E-09 67.5 5.8 56 169-224 55-115 (262)
193 cd00194 UBA Ubiquitin Associat 97.2 0.00058 1.3E-08 45.9 4.4 37 9-45 2-38 (38)
194 PRK10875 recD exonuclease V su 97.2 0.0022 4.8E-08 71.6 10.9 76 160-235 138-221 (615)
195 PRK12723 flagellar biosynthesi 97.1 0.011 2.3E-07 62.4 15.1 126 189-353 175-310 (388)
196 PF12340 DUF3638: Protein of u 97.1 0.0083 1.8E-07 57.7 12.8 127 170-300 21-186 (229)
197 PF13401 AAA_22: AAA domain; P 97.1 0.0023 5E-08 56.7 8.3 19 188-206 4-22 (131)
198 TIGR01447 recD exodeoxyribonuc 97.1 0.0026 5.6E-08 71.0 10.1 61 175-235 147-215 (586)
199 KOG1132 Helicase of the DEAD s 97.0 0.0017 3.8E-08 72.2 8.3 118 500-619 550-722 (945)
200 smart00492 HELICc3 helicase su 96.9 0.0097 2.1E-07 53.3 10.6 76 542-617 27-136 (141)
201 PRK14974 cell division protein 96.9 0.027 5.9E-07 58.2 15.3 126 190-350 142-274 (336)
202 KOG0298 DEAD box-containing he 96.9 0.00097 2.1E-08 76.7 4.6 148 188-354 374-563 (1394)
203 smart00491 HELICc2 helicase su 96.9 0.0088 1.9E-07 53.7 9.9 69 549-617 31-137 (142)
204 KOG1131 RNA polymerase II tran 96.8 0.013 2.9E-07 61.5 11.4 66 168-233 11-87 (755)
205 PF13871 Helicase_C_4: Helicas 96.7 0.0035 7.6E-08 62.2 6.8 64 553-616 52-124 (278)
206 PRK08181 transposase; Validate 96.7 0.018 3.9E-07 57.6 12.0 55 174-229 88-149 (269)
207 PRK06526 transposase; Provisio 96.7 0.012 2.6E-07 58.6 10.4 37 183-219 93-132 (254)
208 COG1875 NYN ribonuclease and A 96.7 0.0045 9.7E-08 62.5 7.0 59 167-225 222-288 (436)
209 PF00448 SRP54: SRP54-type pro 96.6 0.051 1.1E-06 51.8 13.6 127 191-352 4-137 (196)
210 PRK11889 flhF flagellar biosyn 96.5 0.07 1.5E-06 55.6 14.7 129 189-354 242-376 (436)
211 PRK08084 DNA replication initi 96.4 0.017 3.7E-07 57.0 9.6 15 189-203 46-60 (235)
212 PRK08727 hypothetical protein; 96.4 0.029 6.3E-07 55.3 10.8 18 284-301 91-108 (233)
213 PRK06893 DNA replication initi 96.3 0.021 4.5E-07 56.2 9.6 17 284-300 89-105 (229)
214 TIGR02768 TraA_Ti Ti-type conj 96.3 0.026 5.6E-07 65.3 11.2 56 173-228 352-411 (744)
215 PRK13889 conjugal transfer rel 96.2 0.014 3E-07 68.5 8.8 57 170-227 344-404 (988)
216 PF05970 PIF1: PIF1-like helic 96.2 0.0078 1.7E-07 63.6 6.0 55 173-227 1-64 (364)
217 PF00580 UvrD-helicase: UvrD/R 96.1 0.0074 1.6E-07 62.5 5.5 115 174-296 1-125 (315)
218 cd00009 AAA The AAA+ (ATPases 96.1 0.021 4.6E-07 51.2 7.7 18 188-205 19-36 (151)
219 PRK05703 flhF flagellar biosyn 96.1 0.16 3.5E-06 54.6 15.3 129 188-355 221-357 (424)
220 smart00382 AAA ATPases associa 96.0 0.011 2.3E-07 52.7 5.5 38 188-225 2-42 (148)
221 PRK05642 DNA replication initi 95.9 0.056 1.2E-06 53.3 10.3 15 189-203 46-60 (234)
222 PRK06731 flhF flagellar biosyn 95.9 0.28 6.1E-06 49.1 15.2 128 188-353 75-209 (270)
223 PRK14722 flhF flagellar biosyn 95.9 0.079 1.7E-06 55.4 11.4 124 188-352 137-269 (374)
224 PRK04296 thymidine kinase; Pro 95.8 0.07 1.5E-06 50.7 9.9 33 189-221 3-38 (190)
225 PF05621 TniB: Bacterial TniB 95.8 0.056 1.2E-06 54.2 9.4 21 281-301 140-160 (302)
226 PF00004 AAA: ATPase family as 95.8 0.093 2E-06 46.2 10.1 15 191-205 1-15 (132)
227 COG1484 DnaC DNA replication p 95.8 0.024 5.1E-07 56.5 6.8 66 170-235 80-154 (254)
228 PF00308 Bac_DnaA: Bacterial d 95.7 0.12 2.7E-06 50.2 11.7 17 284-300 95-111 (219)
229 COG1419 FlhF Flagellar GTP-bin 95.7 0.3 6.5E-06 51.0 14.7 136 188-363 203-346 (407)
230 PRK06835 DNA replication prote 95.7 0.13 2.9E-06 53.1 12.2 19 187-205 182-200 (329)
231 COG2256 MGS1 ATPase related to 95.7 0.026 5.6E-07 58.1 6.7 21 189-209 49-69 (436)
232 PHA02533 17 large terminase pr 95.6 0.043 9.4E-07 60.6 8.9 63 173-235 59-126 (534)
233 PRK12377 putative replication 95.6 0.12 2.5E-06 51.2 11.0 41 189-230 102-145 (248)
234 PRK12727 flagellar biosynthesi 95.6 0.33 7.2E-06 52.8 14.9 57 284-353 426-482 (559)
235 PRK12726 flagellar biosynthesi 95.6 0.3 6.6E-06 50.9 14.0 129 188-353 206-340 (407)
236 PF14617 CMS1: U3-containing 9 95.5 0.021 4.5E-07 56.1 5.2 83 213-297 126-212 (252)
237 PRK06921 hypothetical protein; 95.5 0.24 5.1E-06 49.8 12.8 17 188-204 117-133 (266)
238 PRK08116 hypothetical protein; 95.3 0.31 6.7E-06 49.0 13.2 16 190-205 116-131 (268)
239 KOG0701 dsRNA-specific nucleas 95.2 0.012 2.5E-07 71.1 2.9 95 513-607 293-399 (1606)
240 PRK12422 chromosomal replicati 95.2 0.16 3.5E-06 55.0 11.4 16 285-300 201-216 (445)
241 PRK08903 DnaA regulatory inact 95.2 0.094 2E-06 51.5 8.9 16 188-203 42-57 (227)
242 cd01120 RecA-like_NTPases RecA 95.1 0.25 5.5E-06 45.1 11.2 35 191-225 2-39 (165)
243 cd01124 KaiC KaiC is a circadi 95.1 0.3 6.4E-06 46.1 11.9 47 191-238 2-51 (187)
244 PF05876 Terminase_GpA: Phage 95.0 0.054 1.2E-06 60.4 7.3 158 173-352 16-191 (557)
245 PRK14721 flhF flagellar biosyn 95.0 0.42 9.1E-06 51.0 13.5 128 188-355 191-326 (420)
246 TIGR02881 spore_V_K stage V sp 95.0 0.24 5.2E-06 49.7 11.2 17 189-205 43-59 (261)
247 PTZ00112 origin recognition co 94.9 0.39 8.5E-06 54.9 13.5 16 285-300 868-883 (1164)
248 PRK05707 DNA polymerase III su 94.9 0.47 1E-05 49.2 13.2 33 173-205 3-39 (328)
249 PF06745 KaiC: KaiC; InterPro 94.8 0.45 9.8E-06 46.6 12.6 98 188-298 19-127 (226)
250 PRK10416 signal recognition pa 94.8 1.2 2.6E-05 46.0 16.0 136 188-352 114-256 (318)
251 TIGR00362 DnaA chromosomal rep 94.8 0.15 3.2E-06 55.0 9.7 16 190-205 138-153 (405)
252 PRK05973 replicative DNA helic 94.8 0.48 1E-05 46.4 12.3 52 186-238 62-116 (237)
253 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.34 7.5E-06 47.3 11.6 18 188-205 38-55 (226)
254 PRK07952 DNA replication prote 94.7 0.45 9.7E-06 47.0 12.1 31 189-219 100-133 (244)
255 KOG2028 ATPase related to the 94.7 0.24 5.2E-06 50.3 10.0 21 190-210 164-184 (554)
256 cd01126 TraG_VirD4 The TraG/Tr 94.7 0.043 9.4E-07 58.6 5.3 57 190-246 1-58 (384)
257 PLN03025 replication factor C 94.7 0.43 9.3E-06 49.5 12.6 18 189-206 35-52 (319)
258 PRK05580 primosome assembly pr 94.6 0.1 2.2E-06 59.9 8.4 77 512-589 190-267 (679)
259 PRK10917 ATP-dependent DNA hel 94.6 0.089 1.9E-06 60.5 8.0 77 512-588 310-391 (681)
260 PRK13833 conjugal transfer pro 94.6 0.13 2.8E-06 52.9 8.3 54 173-226 128-187 (323)
261 PRK09112 DNA polymerase III su 94.6 0.62 1.3E-05 48.8 13.5 16 284-299 139-154 (351)
262 PRK13826 Dtr system oriT relax 94.6 0.15 3.2E-06 60.6 9.8 56 173-228 381-440 (1102)
263 PRK00771 signal recognition pa 94.6 0.86 1.9E-05 49.1 14.7 50 287-348 176-225 (437)
264 KOG0989 Replication factor C, 94.6 0.029 6.4E-07 55.5 3.3 33 177-209 40-78 (346)
265 PRK14956 DNA polymerase III su 94.6 0.4 8.7E-06 51.8 12.1 19 191-209 43-61 (484)
266 PRK07003 DNA polymerase III su 94.6 0.3 6.4E-06 55.3 11.4 16 285-300 118-133 (830)
267 PRK14087 dnaA chromosomal repl 94.5 0.37 8E-06 52.4 12.0 17 284-300 204-220 (450)
268 COG3421 Uncharacterized protei 94.5 0.067 1.4E-06 57.5 6.0 107 193-299 2-125 (812)
269 TIGR02928 orc1/cdc6 family rep 94.5 0.093 2E-06 55.7 7.4 17 189-205 41-57 (365)
270 TIGR00595 priA primosomal prot 94.5 0.1 2.2E-06 57.6 7.7 76 512-588 25-101 (505)
271 PF08423 Rad51: Rad51; InterP 94.4 0.21 4.5E-06 49.9 9.1 106 180-298 25-145 (256)
272 COG1474 CDC6 Cdc6-related prot 94.4 0.22 4.9E-06 52.3 9.6 17 189-205 43-59 (366)
273 PRK14088 dnaA chromosomal repl 94.3 0.34 7.3E-06 52.6 11.2 16 189-204 131-146 (440)
274 cd01122 GP4d_helicase GP4d_hel 94.3 0.31 6.6E-06 49.3 10.3 114 186-300 28-154 (271)
275 PRK11331 5-methylcytosine-spec 94.3 0.097 2.1E-06 55.7 6.7 32 175-206 181-212 (459)
276 PF13173 AAA_14: AAA domain 94.3 0.12 2.5E-06 45.6 6.3 23 286-312 61-83 (128)
277 TIGR00064 ftsY signal recognit 94.3 1.8 3.8E-05 43.7 15.5 134 189-351 73-213 (272)
278 PRK13342 recombination factor 94.3 0.2 4.3E-06 54.1 9.2 18 190-207 38-55 (413)
279 PRK00149 dnaA chromosomal repl 94.2 0.23 5E-06 54.2 9.8 16 189-204 149-164 (450)
280 PF02534 T4SS-DNA_transf: Type 94.2 0.06 1.3E-06 59.3 5.3 57 189-245 45-102 (469)
281 PRK12724 flagellar biosynthesi 94.2 1.6 3.4E-05 46.4 15.3 61 285-354 298-358 (432)
282 PF05496 RuvB_N: Holliday junc 94.2 0.07 1.5E-06 51.1 4.8 19 190-208 52-70 (233)
283 TIGR03015 pepcterm_ATPase puta 94.1 0.19 4.2E-06 50.6 8.5 35 174-208 24-63 (269)
284 PRK00411 cdc6 cell division co 94.1 0.79 1.7E-05 49.2 13.5 17 189-205 56-72 (394)
285 PRK04195 replication factor C 94.1 0.3 6.6E-06 53.8 10.4 19 188-206 39-57 (482)
286 PRK14712 conjugal transfer nic 94.1 0.28 6.1E-06 60.4 10.7 57 173-229 835-900 (1623)
287 TIGR00601 rad23 UV excision re 94.0 0.059 1.3E-06 56.4 4.3 40 8-47 156-195 (378)
288 PRK14949 DNA polymerase III su 93.9 0.28 6.2E-06 56.5 9.9 19 191-209 41-59 (944)
289 PRK07940 DNA polymerase III su 93.9 1.1 2.4E-05 47.7 13.7 18 189-206 37-54 (394)
290 PRK14723 flhF flagellar biosyn 93.9 0.79 1.7E-05 52.4 13.2 125 189-353 186-318 (767)
291 TIGR01075 uvrD DNA helicase II 93.8 0.19 4E-06 58.5 8.5 104 172-297 3-114 (715)
292 PRK07994 DNA polymerase III su 93.7 0.58 1.3E-05 52.7 11.7 17 284-300 117-133 (647)
293 PRK14873 primosome assembly pr 93.7 0.21 4.6E-06 56.7 8.3 91 497-588 172-265 (665)
294 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.48 1E-05 47.4 10.1 51 188-238 36-92 (259)
295 PF05127 Helicase_RecD: Helica 93.7 0.09 2E-06 48.8 4.5 117 192-342 1-125 (177)
296 CHL00181 cbbX CbbX; Provisiona 93.6 1.1 2.3E-05 45.7 12.6 19 188-206 59-77 (287)
297 TIGR00643 recG ATP-dependent D 93.6 0.17 3.6E-06 57.8 7.4 77 512-588 284-365 (630)
298 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.37 8.1E-06 47.6 9.1 107 188-299 21-139 (237)
299 PRK13897 type IV secretion sys 93.6 0.1 2.3E-06 58.3 5.6 57 189-245 159-216 (606)
300 PRK14960 DNA polymerase III su 93.4 0.54 1.2E-05 52.6 10.7 20 190-209 39-58 (702)
301 PRK12323 DNA polymerase III su 93.4 0.75 1.6E-05 51.4 11.6 17 284-300 122-138 (700)
302 KOG1513 Nuclear helicase MOP-3 93.4 0.23 5.1E-06 55.1 7.6 61 556-616 851-920 (1300)
303 PRK11773 uvrD DNA-dependent he 93.4 0.26 5.6E-06 57.3 8.6 103 173-297 9-119 (721)
304 PRK08769 DNA polymerase III su 93.4 1.6 3.5E-05 45.0 13.4 35 172-206 3-44 (319)
305 PRK04328 hypothetical protein; 93.3 0.34 7.3E-06 48.2 8.2 106 188-298 23-140 (249)
306 PRK13894 conjugal transfer ATP 93.2 0.33 7.2E-06 50.0 8.2 53 173-225 132-190 (319)
307 KOG0739 AAA+-type ATPase [Post 93.2 0.9 1.9E-05 45.0 10.5 121 183-346 156-283 (439)
308 TIGR00767 rho transcription te 93.2 0.36 7.9E-06 50.7 8.4 21 186-206 166-186 (415)
309 TIGR00708 cobA cob(I)alamin ad 93.2 0.48 1E-05 43.8 8.3 102 191-302 8-113 (173)
310 PRK09183 transposase/IS protei 93.2 0.64 1.4E-05 46.5 10.0 36 185-220 99-137 (259)
311 COG4962 CpaF Flp pilus assembl 93.2 0.15 3.1E-06 51.9 5.3 58 169-226 153-213 (355)
312 PRK09361 radB DNA repair and r 93.1 0.55 1.2E-05 45.9 9.4 34 188-221 23-59 (225)
313 PRK06871 DNA polymerase III su 93.1 0.81 1.8E-05 47.2 10.8 33 174-206 3-42 (325)
314 TIGR02237 recomb_radB DNA repa 93.1 0.59 1.3E-05 45.1 9.4 35 188-222 12-49 (209)
315 PRK06964 DNA polymerase III su 93.1 0.44 9.5E-06 49.5 8.9 33 174-206 2-39 (342)
316 PRK14964 DNA polymerase III su 93.1 0.84 1.8E-05 49.8 11.3 20 190-209 37-56 (491)
317 PRK11823 DNA repair protein Ra 93.1 0.93 2E-05 49.2 11.8 87 188-299 80-169 (446)
318 PRK14086 dnaA chromosomal repl 93.0 0.58 1.3E-05 52.1 10.2 17 284-300 375-391 (617)
319 TIGR01425 SRP54_euk signal rec 93.0 2.6 5.7E-05 45.1 14.7 51 190-240 102-158 (429)
320 PF03354 Terminase_1: Phage Te 93.0 0.13 2.9E-06 56.5 5.3 61 176-236 1-77 (477)
321 KOG1133 Helicase of the DEAD s 93.0 0.099 2.2E-06 57.2 4.1 116 500-619 618-780 (821)
322 PRK06067 flagellar accessory p 93.0 2.2 4.8E-05 42.0 13.5 99 188-299 25-133 (234)
323 TIGR02880 cbbX_cfxQ probable R 92.9 1 2.2E-05 45.8 11.2 18 188-205 58-75 (284)
324 COG1110 Reverse gyrase [DNA re 92.9 0.22 4.8E-06 57.1 6.8 77 512-588 125-211 (1187)
325 PRK14961 DNA polymerase III su 92.9 1.3 2.8E-05 46.9 12.3 17 191-207 41-57 (363)
326 TIGR02012 tigrfam_recA protein 92.9 0.52 1.1E-05 48.4 8.9 89 188-299 55-146 (321)
327 cd01121 Sms Sms (bacterial rad 92.8 0.93 2E-05 47.8 11.1 87 188-299 82-171 (372)
328 TIGR02760 TraI_TIGR conjugativ 92.8 0.32 7E-06 62.1 9.0 56 173-228 1019-1083(1960)
329 TIGR02782 TrbB_P P-type conjug 92.8 0.53 1.1E-05 48.2 9.0 54 173-226 116-175 (299)
330 cd00984 DnaB_C DnaB helicase C 92.8 1.1 2.3E-05 44.4 11.1 107 187-299 12-136 (242)
331 PRK12402 replication factor C 92.8 1.1 2.4E-05 46.8 11.8 30 178-207 23-55 (337)
332 TIGR00580 mfd transcription-re 92.8 0.26 5.7E-06 58.1 7.5 77 512-588 500-581 (926)
333 PRK13850 type IV secretion sys 92.7 0.18 3.8E-06 57.2 5.8 57 189-245 140-197 (670)
334 PRK05896 DNA polymerase III su 92.7 1.2 2.6E-05 49.6 12.0 19 190-208 40-58 (605)
335 PRK14958 DNA polymerase III su 92.6 1.1 2.4E-05 49.4 11.8 19 191-209 41-59 (509)
336 PF13177 DNA_pol3_delta2: DNA 92.6 1.4 3E-05 40.6 10.7 29 285-319 101-129 (162)
337 TIGR00678 holB DNA polymerase 92.6 2 4.3E-05 40.6 12.1 17 284-300 94-110 (188)
338 PRK09354 recA recombinase A; P 92.6 0.63 1.4E-05 48.2 9.1 89 188-299 60-151 (349)
339 cd00983 recA RecA is a bacter 92.5 0.53 1.2E-05 48.3 8.4 89 188-299 55-146 (325)
340 PRK07764 DNA polymerase III su 92.5 1 2.2E-05 52.6 11.6 19 191-209 40-58 (824)
341 TIGR03499 FlhF flagellar biosy 92.4 0.5 1.1E-05 48.0 8.1 19 188-206 194-212 (282)
342 cd03115 SRP The signal recogni 92.3 7.4 0.00016 36.1 15.6 30 191-220 3-35 (173)
343 PRK14962 DNA polymerase III su 92.3 1.3 2.7E-05 48.5 11.5 18 191-208 39-56 (472)
344 COG1198 PriA Primosomal protei 92.3 0.18 3.9E-06 57.2 5.2 89 496-585 228-318 (730)
345 PRK06645 DNA polymerase III su 92.2 1.1 2.3E-05 49.3 11.0 20 190-209 45-64 (507)
346 KOG0741 AAA+-type ATPase [Post 92.2 0.9 2E-05 48.6 9.7 50 284-341 596-649 (744)
347 PRK13822 conjugal transfer cou 92.2 0.23 4.9E-06 56.2 5.9 58 189-246 225-283 (641)
348 PRK09376 rho transcription ter 92.2 0.72 1.6E-05 48.3 9.0 19 186-204 167-185 (416)
349 cd01394 radB RadB. The archaea 92.2 0.77 1.7E-05 44.6 9.0 33 188-220 19-54 (218)
350 PRK13709 conjugal transfer nic 92.2 0.44 9.6E-06 59.5 8.7 56 173-228 967-1031(1747)
351 PHA00729 NTP-binding motif con 92.2 0.84 1.8E-05 44.2 8.9 34 260-295 58-91 (226)
352 PRK11054 helD DNA helicase IV; 92.2 0.34 7.4E-06 55.4 7.2 79 156-236 176-264 (684)
353 cd00561 CobA_CobO_BtuR ATP:cor 92.1 2.5 5.5E-05 38.6 11.4 100 191-302 5-111 (159)
354 PRK14951 DNA polymerase III su 92.1 1.5 3.3E-05 49.3 12.1 19 191-209 41-59 (618)
355 TIGR02639 ClpA ATP-dependent C 92.1 1.2 2.7E-05 51.8 11.9 37 4-44 22-58 (731)
356 PRK10919 ATP-dependent DNA hel 92.1 0.21 4.5E-06 57.4 5.5 62 173-236 2-70 (672)
357 PLN03187 meiotic recombination 91.9 0.58 1.3E-05 48.6 8.0 95 188-298 126-233 (344)
358 TIGR02760 TraI_TIGR conjugativ 91.9 0.95 2.1E-05 58.0 11.4 59 173-231 429-492 (1960)
359 PRK05986 cob(I)alamin adenolsy 91.9 1.1 2.4E-05 42.1 9.1 107 187-302 21-131 (191)
360 COG0593 DnaA ATPase involved i 91.9 1 2.2E-05 47.6 9.8 68 189-301 114-190 (408)
361 COG0513 SrmB Superfamily II DN 91.9 0.53 1.1E-05 52.2 8.2 68 515-586 102-180 (513)
362 PF03796 DnaB_C: DnaB-like hel 91.8 1.8 4E-05 43.3 11.5 137 189-340 20-180 (259)
363 PF01695 IstB_IS21: IstB-like 91.8 0.2 4.4E-06 46.9 4.2 42 186-228 45-89 (178)
364 PHA02544 44 clamp loader, smal 91.8 2.3 5E-05 44.0 12.6 15 285-299 99-113 (316)
365 PRK06904 replicative DNA helic 91.8 3.3 7.1E-05 45.3 14.1 140 188-337 221-381 (472)
366 PRK08533 flagellar accessory p 91.7 1.2 2.6E-05 43.7 9.7 51 187-238 23-76 (230)
367 PRK13341 recombination factor 91.7 0.49 1.1E-05 54.4 7.9 18 190-207 54-71 (725)
368 PRK08691 DNA polymerase III su 91.7 3.1 6.7E-05 47.1 13.8 20 190-209 40-59 (709)
369 TIGR02688 conserved hypothetic 91.7 0.42 9E-06 50.5 6.6 23 183-205 204-226 (449)
370 cd01393 recA_like RecA is a b 91.7 1 2.2E-05 44.1 9.2 95 188-298 19-126 (226)
371 PRK14952 DNA polymerase III su 91.6 1.6 3.5E-05 48.9 11.6 19 191-209 38-56 (584)
372 TIGR02785 addA_Gpos recombinat 91.6 0.59 1.3E-05 57.6 9.0 118 174-297 2-126 (1232)
373 TIGR01073 pcrA ATP-dependent D 91.5 0.53 1.1E-05 54.9 8.0 104 172-297 3-114 (726)
374 TIGR02767 TraG-Ti Ti-type conj 91.4 0.31 6.8E-06 54.7 5.8 57 189-245 212-270 (623)
375 PRK14959 DNA polymerase III su 91.3 2.7 5.9E-05 47.1 12.8 20 190-209 40-59 (624)
376 PRK07471 DNA polymerase III su 91.3 2.5 5.3E-05 44.6 12.0 16 284-299 139-154 (365)
377 KOG0011 Nucleotide excision re 91.2 0.27 5.8E-06 49.1 4.4 45 5-49 132-176 (340)
378 PRK14948 DNA polymerase III su 91.2 2.6 5.7E-05 47.7 12.8 21 189-209 39-59 (620)
379 PRK06090 DNA polymerase III su 91.1 3.6 7.7E-05 42.4 12.7 33 173-205 3-42 (319)
380 COG1435 Tdk Thymidine kinase [ 91.1 1.3 2.9E-05 41.3 8.6 86 191-299 7-95 (201)
381 TIGR03600 phage_DnaB phage rep 91.1 2.9 6.3E-05 45.2 12.8 111 188-300 194-319 (421)
382 TIGR03689 pup_AAA proteasome A 91.1 1.3 2.8E-05 48.5 10.0 18 188-205 216-233 (512)
383 COG1200 RecG RecG-like helicas 91.0 0.69 1.5E-05 51.3 7.7 86 501-586 300-390 (677)
384 PHA03333 putative ATPase subun 90.8 2.4 5.2E-05 47.5 11.6 62 174-235 170-238 (752)
385 PRK07133 DNA polymerase III su 90.8 1.3 2.9E-05 50.4 9.9 18 191-208 43-60 (725)
386 PRK06995 flhF flagellar biosyn 90.7 1.3 2.9E-05 48.1 9.5 84 189-273 257-348 (484)
387 TIGR00959 ffh signal recogniti 90.7 1.5 3.3E-05 47.1 9.8 82 190-271 101-194 (428)
388 cd01123 Rad51_DMC1_radA Rad51_ 90.6 1.1 2.4E-05 44.1 8.4 95 188-298 19-127 (235)
389 PRK14957 DNA polymerase III su 90.6 3.1 6.6E-05 46.2 12.4 19 191-209 41-59 (546)
390 PRK09111 DNA polymerase III su 90.6 4.2 9.2E-05 45.8 13.7 20 190-209 48-67 (598)
391 PRK13851 type IV secretion sys 90.6 0.32 6.9E-06 50.6 4.5 42 185-226 159-202 (344)
392 PF09288 UBA_3: Fungal ubiquit 90.5 0.27 5.9E-06 35.3 2.7 26 9-34 10-35 (55)
393 PHA03368 DNA packaging termina 90.5 5.4 0.00012 44.6 13.9 161 156-348 226-398 (738)
394 PRK12608 transcription termina 90.4 1.6 3.6E-05 45.5 9.5 30 176-205 118-150 (380)
395 PRK08840 replicative DNA helic 90.4 4.1 9E-05 44.4 13.2 112 188-300 217-343 (464)
396 cd01128 rho_factor Transcripti 90.4 0.71 1.5E-05 45.8 6.6 21 185-205 13-33 (249)
397 TIGR00635 ruvB Holliday juncti 90.4 0.6 1.3E-05 48.1 6.5 17 189-205 31-47 (305)
398 TIGR02238 recomb_DMC1 meiotic 90.4 1.2 2.6E-05 45.8 8.5 95 188-298 96-203 (313)
399 PRK14963 DNA polymerase III su 90.3 2.7 5.9E-05 46.3 11.7 17 191-207 39-55 (504)
400 TIGR03880 KaiC_arch_3 KaiC dom 90.3 6.9 0.00015 38.1 13.6 97 188-298 16-119 (224)
401 COG1222 RPT1 ATP-dependent 26S 90.2 3.3 7.1E-05 42.5 11.0 20 188-207 185-204 (406)
402 TIGR03881 KaiC_arch_4 KaiC dom 90.2 4.2 9.1E-05 39.8 12.1 49 188-237 20-71 (229)
403 PRK11034 clpA ATP-dependent Cl 90.2 2.6 5.7E-05 48.8 11.9 37 4-44 23-59 (758)
404 COG1219 ClpX ATP-dependent pro 90.1 0.15 3.2E-06 51.0 1.5 19 188-206 97-115 (408)
405 PRK14955 DNA polymerase III su 90.1 5.3 0.00011 42.8 13.6 19 190-208 40-58 (397)
406 KOG2543 Origin recognition com 90.1 2.9 6.3E-05 43.2 10.6 139 173-343 9-161 (438)
407 KOG0991 Replication factor C, 90.1 0.76 1.7E-05 43.9 6.1 20 189-208 49-68 (333)
408 PRK10689 transcription-repair 90.1 0.96 2.1E-05 54.9 8.6 75 512-586 649-728 (1147)
409 PRK07993 DNA polymerase III su 90.1 2.8 6E-05 43.7 11.0 33 174-206 3-42 (334)
410 COG3973 Superfamily I DNA and 90.1 0.71 1.5E-05 50.2 6.6 53 188-240 226-287 (747)
411 PHA00350 putative assembly pro 90.0 1.3 2.9E-05 46.7 8.6 24 191-214 4-31 (399)
412 COG2255 RuvB Holliday junction 89.9 0.5 1.1E-05 46.7 4.9 18 190-207 54-71 (332)
413 PRK13880 conjugal transfer cou 89.8 0.46 1E-05 53.9 5.4 56 189-244 176-233 (636)
414 TIGR01074 rep ATP-dependent DN 89.8 0.5 1.1E-05 54.6 5.8 61 174-236 2-69 (664)
415 COG0552 FtsY Signal recognitio 89.8 13 0.00028 38.0 14.9 129 191-347 142-276 (340)
416 PRK05748 replicative DNA helic 89.8 4.3 9.4E-05 44.3 12.8 110 188-299 203-327 (448)
417 PRK08939 primosomal protein Dn 89.7 2.6 5.6E-05 43.3 10.3 17 188-204 156-172 (306)
418 KOG1133 Helicase of the DEAD s 89.6 2.4 5.1E-05 47.0 10.1 39 260-300 323-362 (821)
419 PRK13876 conjugal transfer cou 89.6 0.53 1.1E-05 53.4 5.6 54 189-243 145-199 (663)
420 COG1444 Predicted P-loop ATPas 89.5 2.2 4.7E-05 48.5 10.2 132 174-342 212-358 (758)
421 KOG0298 DEAD box-containing he 89.5 0.45 9.7E-06 55.9 5.0 111 500-614 1209-1319(1394)
422 PRK05636 replicative DNA helic 89.5 3.4 7.4E-05 45.6 11.7 107 191-299 268-388 (505)
423 PRK05563 DNA polymerase III su 89.4 2.3 5.1E-05 47.6 10.5 19 190-208 40-58 (559)
424 PF00437 T2SE: Type II/IV secr 89.4 0.55 1.2E-05 47.4 5.2 48 178-225 116-167 (270)
425 PRK08506 replicative DNA helic 89.4 3.6 7.8E-05 45.1 11.8 111 188-300 192-316 (472)
426 TIGR02655 circ_KaiC circadian 89.3 1.3 2.9E-05 48.7 8.5 107 180-299 250-366 (484)
427 PRK14969 DNA polymerase III su 89.2 1.1 2.4E-05 49.7 7.8 19 191-209 41-59 (527)
428 PRK08699 DNA polymerase III su 89.2 5.8 0.00012 41.1 12.5 32 175-206 3-39 (325)
429 PRK05595 replicative DNA helic 89.2 2.7 5.8E-05 45.8 10.6 110 189-300 202-325 (444)
430 PRK00080 ruvB Holliday junctio 89.1 0.61 1.3E-05 48.6 5.4 18 189-206 52-69 (328)
431 PRK13900 type IV secretion sys 89.0 0.38 8.3E-06 49.9 3.7 41 186-226 158-200 (332)
432 TIGR00665 DnaB replicative DNA 89.0 3.2 7E-05 45.1 11.1 110 188-299 195-318 (434)
433 PTZ00293 thymidine kinase; Pro 88.8 2.3 5E-05 40.7 8.5 36 188-223 4-42 (211)
434 PRK08006 replicative DNA helic 88.8 7.6 0.00017 42.5 13.7 141 188-338 224-384 (471)
435 KOG0734 AAA+-type ATPase conta 88.8 1.9 4E-05 46.4 8.4 39 10-48 161-199 (752)
436 COG1223 Predicted ATPase (AAA+ 88.8 2.9 6.2E-05 40.8 9.0 18 188-205 151-168 (368)
437 PRK14954 DNA polymerase III su 88.7 5.6 0.00012 44.9 12.9 20 190-209 40-59 (620)
438 PF02572 CobA_CobO_BtuR: ATP:c 88.7 4.8 0.0001 37.3 10.3 102 191-302 6-112 (172)
439 PRK10263 DNA translocase FtsK; 88.7 2.3 5.1E-05 51.0 10.1 17 189-205 1011-1027(1355)
440 TIGR01241 FtsH_fam ATP-depende 88.7 2.9 6.3E-05 46.3 10.7 17 189-205 89-105 (495)
441 KOG0733 Nuclear AAA ATPase (VC 88.7 2.3 5E-05 46.5 9.2 33 170-205 208-240 (802)
442 PRK10867 signal recognition pa 88.6 12 0.00025 40.4 14.6 53 190-242 102-161 (433)
443 cd01130 VirB11-like_ATPase Typ 88.6 0.65 1.4E-05 43.9 4.7 33 173-205 9-42 (186)
444 PRK04301 radA DNA repair and r 88.6 2.2 4.7E-05 44.2 9.0 95 188-298 102-210 (317)
445 PRK14950 DNA polymerase III su 88.5 5.1 0.00011 45.3 12.5 18 191-208 41-58 (585)
446 PRK03992 proteasome-activating 88.4 2 4.4E-05 45.8 8.8 18 189-206 166-183 (389)
447 PTZ00035 Rad51 protein; Provis 88.4 2.1 4.6E-05 44.6 8.7 95 188-298 118-225 (337)
448 KOG0742 AAA+-type ATPase [Post 88.2 1.9 4.2E-05 44.7 7.9 17 189-205 385-401 (630)
449 TIGR02397 dnaX_nterm DNA polym 88.1 5 0.00011 42.2 11.7 16 190-205 38-53 (355)
450 TIGR02640 gas_vesic_GvpN gas v 88.0 0.61 1.3E-05 46.8 4.3 40 180-219 13-52 (262)
451 PRK14701 reverse gyrase; Provi 87.9 1.3 2.7E-05 55.6 7.7 60 512-571 122-187 (1638)
452 PRK00440 rfc replication facto 87.9 4.7 0.0001 41.6 11.1 16 190-205 40-55 (319)
453 TIGR01243 CDC48 AAA family ATP 87.9 2.5 5.3E-05 49.4 9.8 18 188-205 212-229 (733)
454 CHL00095 clpC Clp protease ATP 87.8 3.4 7.3E-05 48.9 10.9 31 175-205 184-217 (821)
455 PRK06321 replicative DNA helic 87.6 4.5 9.7E-05 44.2 11.0 152 181-340 215-389 (472)
456 PRK07004 replicative DNA helic 87.6 5.2 0.00011 43.7 11.5 140 188-338 213-372 (460)
457 COG4185 Uncharacterized protei 87.6 2.8 6.2E-05 37.7 7.6 37 191-228 5-41 (187)
458 COG2804 PulE Type II secretory 87.6 0.52 1.1E-05 50.5 3.6 31 174-204 242-274 (500)
459 KOG0738 AAA+-type ATPase [Post 87.4 4.8 0.0001 41.7 10.1 17 189-205 246-262 (491)
460 PRK09165 replicative DNA helic 87.3 5.9 0.00013 43.8 11.8 108 189-300 218-355 (497)
461 TIGR03345 VI_ClpV1 type VI sec 87.2 3.6 7.9E-05 48.6 10.6 28 178-205 192-225 (852)
462 TIGR03346 chaperone_ClpB ATP-d 87.1 3.1 6.7E-05 49.4 10.1 37 4-42 22-58 (852)
463 KOG0347 RNA helicase [RNA proc 87.0 1.2 2.6E-05 47.8 5.8 72 514-589 265-349 (731)
464 COG0470 HolB ATPase involved i 87.0 1.6 3.5E-05 45.2 7.0 21 188-208 23-44 (325)
465 PRK14965 DNA polymerase III su 87.0 4.6 0.0001 45.5 10.9 18 191-208 41-58 (576)
466 TIGR00602 rad24 checkpoint pro 86.9 2.6 5.7E-05 47.6 8.9 18 190-207 112-129 (637)
467 PRK08760 replicative DNA helic 86.9 4.1 9E-05 44.6 10.3 106 189-299 230-352 (476)
468 TIGR01547 phage_term_2 phage t 86.9 1.9 4.2E-05 46.2 7.7 128 190-342 3-142 (396)
469 KOG2561 Adaptor protein NUB1, 86.7 1.3 2.9E-05 46.0 5.8 40 10-49 431-470 (568)
470 KOG1513 Nuclear helicase MOP-3 86.7 0.77 1.7E-05 51.2 4.3 160 172-342 263-456 (1300)
471 CHL00176 ftsH cell division pr 86.5 1.4 3.1E-05 49.9 6.6 17 189-205 217-233 (638)
472 COG0464 SpoVK ATPases of the A 86.3 2.9 6.3E-05 46.3 8.9 22 189-210 277-298 (494)
473 PF00154 RecA: recA bacterial 86.3 3.8 8.2E-05 42.1 8.9 88 188-298 53-143 (322)
474 KOG0726 26S proteasome regulat 86.3 1.4 3E-05 43.6 5.4 33 170-205 204-236 (440)
475 PRK11634 ATP-dependent RNA hel 86.3 2.1 4.5E-05 48.8 7.8 80 505-588 67-157 (629)
476 COG0468 RecA RecA/RadA recombi 86.3 3.6 7.9E-05 41.3 8.6 88 189-298 61-153 (279)
477 PF01443 Viral_helicase1: Vira 86.1 0.25 5.5E-06 48.5 0.4 15 285-299 61-75 (234)
478 COG4626 Phage terminase-like p 86.1 1.7 3.7E-05 47.2 6.5 63 173-235 61-140 (546)
479 PF01637 Arch_ATPase: Archaeal 86.0 3.2 6.9E-05 40.3 8.3 17 188-204 20-36 (234)
480 cd00268 DEADc DEAD-box helicas 86.0 3.4 7.4E-05 39.4 8.2 75 511-589 68-152 (203)
481 COG2909 MalT ATP-dependent tra 85.8 4.5 9.7E-05 46.2 9.8 45 285-342 128-172 (894)
482 PTZ00454 26S protease regulato 85.8 3.3 7.1E-05 44.2 8.6 20 188-207 179-198 (398)
483 PRK11776 ATP-dependent RNA hel 85.8 2.1 4.6E-05 46.9 7.5 74 512-589 72-156 (460)
484 COG0466 Lon ATP-dependent Lon 85.5 2.5 5.4E-05 47.3 7.5 81 188-300 350-431 (782)
485 PRK08058 DNA polymerase III su 85.4 5.8 0.00013 41.3 10.1 17 284-300 108-124 (329)
486 PRK10865 protein disaggregatio 85.4 6.6 0.00014 46.6 11.5 34 4-39 27-60 (857)
487 PRK06647 DNA polymerase III su 85.3 7.5 0.00016 43.6 11.4 19 190-208 40-58 (563)
488 COG2812 DnaX DNA polymerase II 85.2 0.5 1.1E-05 51.5 2.1 17 284-300 117-133 (515)
489 TIGR03819 heli_sec_ATPase heli 85.2 1.3 2.9E-05 46.1 5.1 52 174-225 163-217 (340)
490 PRK08451 DNA polymerase III su 85.1 5.1 0.00011 44.3 9.8 17 284-300 115-131 (535)
491 PRK14970 DNA polymerase III su 85.1 8.6 0.00019 40.7 11.4 16 190-205 41-56 (367)
492 TIGR01243 CDC48 AAA family ATP 84.9 3.2 7E-05 48.4 8.8 19 189-207 488-506 (733)
493 KOG0331 ATP-dependent RNA heli 84.8 2.8 6.1E-05 45.5 7.5 90 512-605 165-272 (519)
494 PF13481 AAA_25: AAA domain; P 84.8 5.9 0.00013 37.4 9.2 106 187-301 31-156 (193)
495 KOG0729 26S proteasome regulat 84.6 10 0.00023 37.1 10.3 18 189-206 212-229 (435)
496 KOG0338 ATP-dependent RNA heli 84.6 3.1 6.8E-05 44.4 7.4 82 510-595 250-342 (691)
497 COG1618 Predicted nucleotide k 84.6 4.1 9E-05 36.9 7.1 28 285-312 99-126 (179)
498 TIGR00614 recQ_fam ATP-depende 84.6 2.8 6E-05 46.1 7.6 77 512-588 51-135 (470)
499 PHA00012 I assembly protein 84.5 5.8 0.00013 40.4 8.9 47 285-341 80-129 (361)
500 PF06733 DEAD_2: DEAD_2; Inte 84.4 1 2.2E-05 42.1 3.5 41 258-300 117-159 (174)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5e-68 Score=591.41 Aligned_cols=399 Identities=37% Similarity=0.587 Sum_probs=332.9
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHH
Q 005742 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 153 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~ 232 (679)
..++|...+...+++.||+..|||+|.++|++++.|+|+++++|||+|||+||++|++..++.+|||+|+++|+++|...
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEcCCCCcHHHHHH---HH--cCCccEEEEChHHHHH---HHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 233 LSKHGVTACFLGSGQPDNKVEQK---AL--RGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~Ili~Tp~~l~~---ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
+...++.+..+.++......... .. .+.++|+|+|||++.. ++..+........+.+|||||||++++||++
T Consensus 520 L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhD 599 (1195)
T PLN03137 520 LLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHD 599 (1195)
T ss_pred HHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccc
Confidence 99999999988887765432221 11 1578999999999862 3443333333456899999999999999999
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
|++.|..|..++..++ ..|+++||||++..+..++...|++. ...++..++.|+++.+.+......
T Consensus 600 FRpdYr~L~~Lr~~fp---------~vPilALTATAT~~V~eDI~~~L~l~-~~~vfr~Sf~RpNL~y~Vv~k~kk---- 665 (1195)
T PLN03137 600 FRPDYQGLGILKQKFP---------NIPVLALTATATASVKEDVVQALGLV-NCVVFRQSFNRPNLWYSVVPKTKK---- 665 (1195)
T ss_pred hHHHHHHHHHHHHhCC---------CCCeEEEEecCCHHHHHHHHHHcCCC-CcEEeecccCccceEEEEeccchh----
Confidence 9999999988877765 78999999999999999999999876 456677889999998887642210
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
.+.
T Consensus 666 ---~le-------------------------------------------------------------------------- 668 (1195)
T PLN03137 666 ---CLE-------------------------------------------------------------------------- 668 (1195)
T ss_pred ---HHH--------------------------------------------------------------------------
Confidence 001
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecC
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg 544 (679)
.+..++.......++||||.+++.++.+++.|...|+.+..|||
T Consensus 669 ------------------------------------~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHA 712 (1195)
T PLN03137 669 ------------------------------------DIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHG 712 (1195)
T ss_pred ------------------------------------HHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeC
Confidence 11112222222457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc
Q 005742 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL 624 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~ 624 (679)
+|++++|..++++|+.|+++|||||++++||||+|+|++||||++|.|++.|+||+|||||+|+.|.|++||+..|...+
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~ 792 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRV 792 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665322
Q ss_pred ---CCCCC---------------CHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCC-CCCCC
Q 005742 625 ---LPSRR---------------SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LYVNF 678 (679)
Q Consensus 625 ---~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~-~c~~~ 678 (679)
+.... .....+..+..|..|.+||.++..|||+.|++||||.+....|. .||||
T Consensus 793 ~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C~~~CDnC 865 (1195)
T PLN03137 793 KHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTCDNC 865 (1195)
T ss_pred HHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCCCCCCCCC
Confidence 11100 01123445678889999998778999999999999998655565 59988
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-64 Score=535.60 Aligned_cols=386 Identities=41% Similarity=0.671 Sum_probs=332.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCc
Q 005742 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT 239 (679)
Q Consensus 160 ~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~ 239 (679)
.+...|++.||+..+++-|.++|..++.|+|+++.+|||.|||+||++|++...+.+|||+|..+|+.+|.+.+...|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHH
Q 005742 240 ACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLR 316 (679)
Q Consensus 240 ~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~ 316 (679)
+..+++.....+ .......+..++++.+||++..- .....+....+.++|||||||+++|||+|||.|.+++.++
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~--~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSP--RFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcCh--HHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 999988865533 34455566789999999998741 2233444678999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHH
Q 005742 317 ENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396 (679)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 396 (679)
..++ ++|+++||||+++.+..+|.+.|++. ...++..++.|||+.+.+....... .++
T Consensus 162 ~~~~---------~~p~~AlTATA~~~v~~DI~~~L~l~-~~~~~~~sfdRpNi~~~v~~~~~~~--------~q~---- 219 (590)
T COG0514 162 AGLP---------NPPVLALTATATPRVRDDIREQLGLQ-DANIFRGSFDRPNLALKVVEKGEPS--------DQL---- 219 (590)
T ss_pred hhCC---------CCCEEEEeCCCChHHHHHHHHHhcCC-CcceEEecCCCchhhhhhhhcccHH--------HHH----
Confidence 8876 89999999999999999999999986 4567889999999998876532110 000
Q ss_pred hhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccccccc
Q 005742 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFY 476 (679)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (679)
T Consensus 220 -------------------------------------------------------------------------------- 219 (590)
T COG0514 220 -------------------------------------------------------------------------------- 219 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccchhhccccCchHHHhhhccC--CCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 005742 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQE--PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV 554 (679)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v 554 (679)
. ++.+ ....+..||||.|++.++.++++|...|+.+..|||+|+.++|+.+
T Consensus 220 --------------------------~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 220 --------------------------A-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERV 272 (590)
T ss_pred --------------------------H-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHH
Confidence 0 1111 1225679999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCC---ccCCC-CCC
Q 005742 555 HTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP---TLLPS-RRS 630 (679)
Q Consensus 555 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~---~~~~~-~~~ 630 (679)
.++|..++.+|+|||.+++||||.|+|++|||||+|.|+++|+|.+|||||+|.++.|++||.+.|.. ++... ...
T Consensus 273 q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~ 352 (590)
T COG0514 273 QQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPD 352 (590)
T ss_pred HHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999998854 22222 334
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCCCCCCC
Q 005742 631 EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYVNF 678 (679)
Q Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~~c~~~ 678 (679)
.+..+.....+..+..||.... ||+..+..||||+ ....|..|++|
T Consensus 353 ~~~~~~~~~kl~~~~~~~e~~~-crr~~ll~yfge~-~~~~c~~c~~c 398 (590)
T COG0514 353 EEQKQIELAKLRQMIAYCETQT-CRRLVLLKYFGED-EPEPCGNCDNC 398 (590)
T ss_pred HHHHHHHHHHHHHHHHhccccc-chHHHHHHhcCcc-ccccccCCCcc
Confidence 4555666788888999995555 9999999999999 66678888888
No 3
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.7e-64 Score=544.25 Aligned_cols=387 Identities=41% Similarity=0.716 Sum_probs=317.2
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005742 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 164 ~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
.|++.|||+.|||+|.++|+.+++|+|+++++|||+|||++|++|++..++.+|||+||++|+.|+.+.+...++.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhc
Q 005742 244 GSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320 (679)
Q Consensus 244 ~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~ 320 (679)
.++...... ......+.++|+|+||+++......+.......++++|||||||++++||++|++.+..+..++..++
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 161 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP 161 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC
Confidence 877654421 22334566899999999986432211222256789999999999999999999999999988877765
Q ss_pred cccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhc
Q 005742 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKK 400 (679)
Q Consensus 321 ~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (679)
+.|+++||||++..+..++...+++.. ..++..++.++++.+.+......
T Consensus 162 ---------~~~~l~lTAT~~~~~~~di~~~l~l~~-~~~~~~s~~r~nl~~~v~~~~~~-------------------- 211 (470)
T TIGR00614 162 ---------NVPIMALTATASPSVREDILRQLNLKN-PQIFCTSFDRPNLYYEVRRKTPK-------------------- 211 (470)
T ss_pred ---------CCceEEEecCCCHHHHHHHHHHcCCCC-CcEEeCCCCCCCcEEEEEeCCcc--------------------
Confidence 789999999999999999999998864 45566778888887776543211
Q ss_pred cccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCC
Q 005742 401 KTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSP 480 (679)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (679)
T Consensus 212 -------------------------------------------------------------------------------- 211 (470)
T TIGR00614 212 -------------------------------------------------------------------------------- 211 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhC
Q 005742 481 HRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560 (679)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~ 560 (679)
....++..+.+..+..++||||++++.++.+++.|...|+.+..|||+|++++|..++++|++
T Consensus 212 -----------------~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 212 -----------------ILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred -----------------HHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 011122222222234567999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc---CCCCCCHHHHHHH
Q 005742 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQA 637 (679)
Q Consensus 561 g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~---~~~~~~~~~~~~~ 637 (679)
|+++|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|+.|.|++|+++.|...+ +.......+....
T Consensus 275 g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (470)
T TIGR00614 275 DEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYK 354 (470)
T ss_pred CCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876533 2222222222222
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhhhCCCC---------CCCCCCCCCCC
Q 005742 638 YRMLSDCFRYGMNTSCCRAKILVEYFGEDF---------SHEKCQLYVNF 678 (679)
Q Consensus 638 ~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~---------~~~~c~~c~~~ 678 (679)
...+. .+.|+.++..|||+.|.+||||.. +..+|++|++|
T Consensus 355 ~~~~~-~~~~~~~~~~crr~~l~~~f~~~~~~~~~~~~~~~~~C~~C~~~ 403 (470)
T TIGR00614 355 LKLYE-MMEYCLNSSTCRRLILLSHFGEKQLNKSFGIMGTEKCCDNCCKR 403 (470)
T ss_pred HHHHH-HHHHHhccccCHHHHHHHHcCCcccccccccccCCCCCCCCCCc
Confidence 33443 445667999999999999999962 24578888887
No 4
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.8e-62 Score=544.12 Aligned_cols=391 Identities=37% Similarity=0.626 Sum_probs=323.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
+.......+|++.|||.+|+|+|+++++.+++|+|+++++|||+|||++|++|++...+.+|||+|+++|+.|+.+.+..
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHH
Confidence 45555677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHH
Q 005742 236 HGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
+++.+..+.++...... ......+..+++|+||+++... .+...+...++++|||||||++.+||++|++.|..|
T Consensus 88 ~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L 165 (607)
T PRK11057 88 NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--NFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAAL 165 (607)
T ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--HHHHHHhhCCCCEEEEeCccccccccCcccHHHHHH
Confidence 99998888776654332 2223446689999999998731 112234456899999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHH
Q 005742 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392 (679)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~ 392 (679)
..++..++ +.|+++||||++.....++...+++.. +.+....+.++++.+.+...... +
T Consensus 166 ~~l~~~~p---------~~~~v~lTAT~~~~~~~di~~~l~l~~-~~~~~~~~~r~nl~~~v~~~~~~--------~--- 224 (607)
T PRK11057 166 GQLRQRFP---------TLPFMALTATADDTTRQDIVRLLGLND-PLIQISSFDRPNIRYTLVEKFKP--------L--- 224 (607)
T ss_pred HHHHHhCC---------CCcEEEEecCCChhHHHHHHHHhCCCC-eEEEECCCCCCcceeeeeeccch--------H---
Confidence 88887765 789999999999999999999988764 44566777788877665332100 0
Q ss_pred HHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccc
Q 005742 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVAC 472 (679)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (679)
T Consensus 225 -------------------------------------------------------------------------------- 224 (607)
T PRK11057 225 -------------------------------------------------------------------------------- 224 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005742 473 GEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
..++..+.. ....++||||+++++++.++..|...|+.+..|||+|++++|.
T Consensus 225 ---------------------------~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~ 276 (607)
T PRK11057 225 ---------------------------DQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRA 276 (607)
T ss_pred ---------------------------HHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHH
Confidence 111111211 1256899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc---CCCCC
Q 005742 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRR 629 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~---~~~~~ 629 (679)
.+++.|+.|+++|||||+++++|||+|+|++|||||+|.|.++|+||+|||||.|.+|.|++|+++.|...+ +....
T Consensus 277 ~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~ 356 (607)
T PRK11057 277 DVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 356 (607)
T ss_pred HHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998875432 22222
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCCCCCCCC
Q 005742 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYVNFF 679 (679)
Q Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~~c~~~~ 679 (679)
...+.......|..+..|| ++..|||+.|.+||||.+. .+|+.||||.
T Consensus 357 ~~~~~~~~~~~l~~~~~~~-~~~~Crr~~~l~yf~e~~~-~~c~~cd~c~ 404 (607)
T PRK11057 357 AGQQQDIERHKLNAMGAFA-EAQTCRRLVLLNYFGEGRQ-EPCGNCDICL 404 (607)
T ss_pred cHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHhCCCCC-CCCCCCCCCC
Confidence 2233333445778888998 5578999999999999874 4789999983
No 5
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.1e-61 Score=539.13 Aligned_cols=384 Identities=41% Similarity=0.643 Sum_probs=321.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceE
Q 005742 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTAC 241 (679)
Q Consensus 162 ~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~ 241 (679)
..+|++.|||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..++.+|||+|+++|+.|+.+.++.+++.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 242 FLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 242 ~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
.++++...... ......+..+|+++||+++.... +...+...++++|||||||++.+||++|++.|.++..+...
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~--~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY--FLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH--HHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 88877655432 22344567899999999986422 23455667899999999999999999999999999998877
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhh
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 398 (679)
++ ..++++||||++..+..++..++++... ..+..++.++++.+.+......
T Consensus 160 ~~---------~~~vi~lTAT~~~~~~~~i~~~l~~~~~-~~~~~~~~r~nl~~~v~~~~~~------------------ 211 (591)
T TIGR01389 160 FP---------QVPRIALTATADAETRQDIRELLRLADA-NEFITSFDRPNLRFSVVKKNNK------------------ 211 (591)
T ss_pred CC---------CCCEEEEEeCCCHHHHHHHHHHcCCCCC-CeEecCCCCCCcEEEEEeCCCH------------------
Confidence 65 5679999999999999999999988754 3456778889888876542211
Q ss_pred hccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCC
Q 005742 399 KKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGH 478 (679)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (679)
T Consensus 212 -------------------------------------------------------------------------------- 211 (591)
T TIGR01389 212 -------------------------------------------------------------------------------- 211 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 005742 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF 558 (679)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F 558 (679)
...+.+.+... ...++||||++++.++.+++.|...|+.+..|||+|++++|+.+++.|
T Consensus 212 --------------------~~~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 212 --------------------QKFLLDYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred --------------------HHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 11112222221 156899999999999999999999999999999999999999999999
Q ss_pred hCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCccC---CC-CCCHHHH
Q 005742 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL---PS-RRSEDQT 634 (679)
Q Consensus 559 ~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~~---~~-~~~~~~~ 634 (679)
.+|+++|||||+++++|||+|+|++||||++|.|+++|+|++|||||+|+.|.|++||++.|...+. .. .......
T Consensus 271 ~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~ 350 (591)
T TIGR01389 271 LYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYK 350 (591)
T ss_pred HcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988754321 11 1222223
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCCCCCCC
Q 005742 635 KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLYVNF 678 (679)
Q Consensus 635 ~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~~c~~~ 678 (679)
......+..+..|+ ++..|||..+.+||||.. ...|+.||||
T Consensus 351 ~~~~~~l~~~~~~~-~~~~c~r~~~~~~f~~~~-~~~c~~cd~c 392 (591)
T TIGR01389 351 QIEREKLRAMIAYC-ETQTCRRAYILRYFGENE-VEPCGNCDNC 392 (591)
T ss_pred HHHHHHHHHHHHHH-cccccHhHHHHHhcCCCC-CCCCCCCCCC
Confidence 33456778888998 567999999999999974 4578899988
No 6
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-60 Score=532.23 Aligned_cols=396 Identities=45% Similarity=0.721 Sum_probs=343.9
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhc
Q 005742 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 157 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
|.+++...|...||+..+++-|.+||..++.|+|++|.+|||.||++||++|++..++.+|||+|+++|+++|...|...
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc
Confidence 66678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEcCCCCcH---HHHHHHHcC--CccEEEEChHHHHHHHHHHHHHHhhcC---ceEEEeecccccccCCCCchHH
Q 005742 237 GVTACFLGSGQPDN---KVEQKALRG--MYSIIYVCPETVIRLIKPLQRLAESRG---IALFAIDEVHCVSKWGHDFRPD 308 (679)
Q Consensus 237 ~~~~~~~~~~~~~~---~~~~~~~~~--~~~Ili~Tp~~l~~ll~~~~~~~~~~~---~~lvViDEaH~l~~~g~~f~~~ 308 (679)
++.+..+.++.... ...+.+..+ ..+|++.|||++...-........+.. +.++|||||||.+.|||+||+.
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 99999999988875 334444555 689999999999853222233444545 9999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHh
Q 005742 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388 (679)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~ 388 (679)
|+++..++..++ .+|+++||||++..++.++...|++.. ..++..+|.|+|+.+.|.......
T Consensus 408 Yk~l~~l~~~~~---------~vP~iALTATAT~~v~~DIi~~L~l~~-~~~~~~sfnR~NL~yeV~~k~~~~------- 470 (941)
T KOG0351|consen 408 YKRLGLLRIRFP---------GVPFIALTATATERVREDVIRSLGLRN-PELFKSSFNRPNLKYEVSPKTDKD------- 470 (941)
T ss_pred HHHHHHHHhhCC---------CCCeEEeehhccHHHHHHHHHHhCCCC-cceecccCCCCCceEEEEeccCcc-------
Confidence 999999998886 689999999999999999999999985 558899999999999998755311
Q ss_pred HHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccc
Q 005742 389 FCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDW 468 (679)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (679)
T Consensus 471 -------------------------------------------------------------------------------- 470 (941)
T KOG0351|consen 471 -------------------------------------------------------------------------------- 470 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCH
Q 005742 469 DVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (679)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~ 548 (679)
.....+..+....+...+||||.++++|+.++..|+..++.+..||++|+.
T Consensus 471 -----------------------------~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 471 -----------------------------ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred -----------------------------chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 111223333444557799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCccC---
Q 005742 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL--- 625 (679)
Q Consensus 549 ~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~~--- 625 (679)
.+|+.|..+|..++++|+|||-++++|||.|+|+.||||.+|+|++.|+|.+|||||+|....|++||...|...+.
T Consensus 522 ~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred CCCCCHHHHH--HHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCCCCCC---CCCCC
Q 005742 626 PSRRSEDQTK--QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ---LYVNF 678 (679)
Q Consensus 626 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~~~c~---~c~~~ 678 (679)
.+.....+.. ....++..++.||+|...|||+++.+||||.|....|. .||+|
T Consensus 602 ~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~~~~c~~~k~cd~C 659 (941)
T KOG0351|consen 602 TSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFDSKHCKKHKTCDNC 659 (941)
T ss_pred HccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccchhhccCCchHHHh
Confidence 2221222333 36789999999999999999999999999998766676 67776
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-60 Score=493.78 Aligned_cols=337 Identities=23% Similarity=0.350 Sum_probs=278.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------------cCCeEEEEcC
Q 005742 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISP 221 (679)
Q Consensus 154 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------------~~~~vLvl~P 221 (679)
...+++.+..+|+. .||..|+|+|.++||.++.|+|++.++.|||||||+|++|++. .++++|||+|
T Consensus 95 ~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 95 ELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred cccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 34677778888874 4999999999999999999999999999999999999999974 2789999999
Q ss_pred chHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccc
Q 005742 222 LISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297 (679)
Q Consensus 222 t~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~ 297 (679)
||+|+.|+.+.+..+ .++.++++||.+... +...+..+.+|+|+||+++.++++ .+...++++.++|+||||+
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~-Q~~~l~~gvdiviaTPGRl~d~le--~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP-QLRDLERGVDVVIATPGRLIDLLE--EGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH-HHHHHhcCCcEEEeCChHHHHHHH--cCCccccceeEEEeccHHh
Confidence 999999999999887 455788888887766 445566779999999999999999 8888999999999999999
Q ss_pred cccCCCCchHHHHHHHHHHHhhcccccccc-CCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEe
Q 005742 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSL-KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376 (679)
Q Consensus 298 l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~ 376 (679)
|+++| |++++++| +..+ ++..|++++|||++..+......+++. + +...+..
T Consensus 251 MldmG--Fe~qI~~I-----------l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~--~------------~~i~ig~ 303 (519)
T KOG0331|consen 251 MLDMG--FEPQIRKI-----------LSQIPRPDRQTLMFSATWPKEVRQLAEDFLNN--P------------IQINVGN 303 (519)
T ss_pred hhccc--cHHHHHHH-----------HHhcCCCcccEEEEeeeccHHHHHHHHHHhcC--c------------eEEEecc
Confidence 99999 99999999 5555 445689999999999998877777751 1 1122111
Q ss_pred cCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 005742 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (679)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (679)
.. .....+.+.+++.
T Consensus 304 ~~---~~~a~~~i~qive-------------------------------------------------------------- 318 (519)
T KOG0331|consen 304 KK---ELKANHNIRQIVE-------------------------------------------------------------- 318 (519)
T ss_pred hh---hhhhhcchhhhhh--------------------------------------------------------------
Confidence 10 0001111111111
Q ss_pred hhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC--CCCcEEEEeCchhHHHHHHHHHHh
Q 005742 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCG 534 (679)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~IVF~~t~~~~~~l~~~L~~ 534 (679)
..+...|...+...|.+.. ..+|+||||+|++.|++|+..|+.
T Consensus 319 -----------------------------------~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~ 363 (519)
T KOG0331|consen 319 -----------------------------------VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR 363 (519)
T ss_pred -----------------------------------hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh
Confidence 1122234444444444443 467999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEE
Q 005742 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614 (679)
Q Consensus 535 ~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~ 614 (679)
.++++..+||+.+|.+|+.+++.|++|++.|||||++++||||||+|++|||||+|.++++|+||+|||||+|+.|.+++
T Consensus 364 ~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 364 KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005742 615 YANLSSM 621 (679)
Q Consensus 615 l~~~~~~ 621 (679)
|++..+.
T Consensus 444 fft~~~~ 450 (519)
T KOG0331|consen 444 FFTSDNA 450 (519)
T ss_pred EEeHHHH
Confidence 9986543
No 8
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-58 Score=450.40 Aligned_cols=405 Identities=34% Similarity=0.532 Sum_probs=331.4
Q ss_pred HHHHHHHHHHhcCCCCC-CHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 158 EVKVNSLLKKHFGHSSL-KNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 158 ~~~~~~~l~~~~g~~~~-~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
...+.++|++.||+.++ ++.|..|+..+.++ +|+.|++|||+||++||++|++..++.+||++|+.+|+.+|...|.+
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh
Confidence 45688999999999887 58999999998876 59999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcCCCCcHHHHH-----HHHcCCccEEEEChHHHHH-HH-HHHHHHHhhcCceEEEeecccccccCCCCchHH
Q 005742 236 HGVTACFLGSGQPDNKVEQ-----KALRGMYSIIYVCPETVIR-LI-KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (679)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ili~Tp~~l~~-ll-~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~ 308 (679)
+.+.+-.+++..+..+..+ ........+++.|||+... .+ ..++.+.+..-+.++|+||||+.+.|||+|+|+
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 9888877777655433211 1123456899999998763 22 223445566779999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHh
Q 005742 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388 (679)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~ 388 (679)
|.+|+.++..++ +.+.++||||.++.+.++++..|++..+.-++.++.+|.|+.|.+.... ...+.
T Consensus 164 YL~LG~LRS~~~---------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~-----~I~D~ 229 (641)
T KOG0352|consen 164 YLTLGSLRSVCP---------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKS-----FITDC 229 (641)
T ss_pred hhhhhhHHhhCC---------CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHH-----HhhhH
Confidence 999999999887 8999999999999999999999999999999999999999987654321 22233
Q ss_pred HHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccc
Q 005742 389 FCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDW 468 (679)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (679)
+..+.+..........+
T Consensus 230 ~~~LaDF~~~~LG~~~~--------------------------------------------------------------- 246 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEK--------------------------------------------------------------- 246 (641)
T ss_pred hHhHHHHHHHhcCChhh---------------------------------------------------------------
Confidence 33333332211000000
Q ss_pred ccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCH
Q 005742 469 DVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (679)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~ 548 (679)
.-+ - ..-..+..||||.||+.|+.++-.|...|+++..||+++..
T Consensus 247 ---------------------------------~~~-~-~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~ 291 (641)
T KOG0352|consen 247 ---------------------------------ASQ-N-KKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKK 291 (641)
T ss_pred ---------------------------------hhc-C-CCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhccccc
Confidence 000 0 00015689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCccC---
Q 005742 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL--- 625 (679)
Q Consensus 549 ~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~~--- 625 (679)
.+|..+.+.|.+|+..|++||..+++|+|.|+|+.|||+++|+|+..|+|..|||||+|+++.|-+||...|...+.
T Consensus 292 ~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 292 KERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred chhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765431
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCCCCC--CCCCCC
Q 005742 626 --------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH--EKCQLY 675 (679)
Q Consensus 626 --------~~~~~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~~~~--~~c~~c 675 (679)
.....+-+++.....+..+..|| ....||+..+..|||+..++ .+|+.|
T Consensus 372 ~~e~aklrek~~ke~~~k~~I~~F~k~~eFC-E~~~CRH~~ia~fFgD~~p~ckg~cd~c 430 (641)
T KOG0352|consen 372 SGELAKLREKAKKEMQIKSIITGFAKMLEFC-ESARCRHVSIASFFDDTECPCKTNCDYC 430 (641)
T ss_pred hhHHHHHHHhcchhhhHHHHHHHHHHHHHHH-HHcccchHHHHHhcCCCCCCCCCCcccc
Confidence 12234556777888888899999 67889999999999998752 234444
No 9
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.1e-57 Score=440.09 Aligned_cols=398 Identities=36% Similarity=0.623 Sum_probs=343.9
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHH
Q 005742 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 153 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~ 232 (679)
..++|+.+..++|++.|...+++|.|.++|++.+.|+++++++|||.||++||++|++...+.+|||+|..+|+++|.-.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQ 153 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHH
Confidence 36699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEcCCCCcHHHH---HHHH--cCCccEEEEChHHHHH---HHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 233 LSKHGVTACFLGSGQPDNKVE---QKAL--RGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~Ili~Tp~~l~~---ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
|+.+|+....++...+..... .... .....++++||+.+.. ++..+.+.+....+.+|.|||+|+.+.|||+
T Consensus 154 lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghd 233 (695)
T KOG0353|consen 154 LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHD 233 (695)
T ss_pred HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcc
Confidence 999999998887766554321 1222 3457899999999873 6666777788889999999999999999999
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
|+++|..++.+.+.|+ ..++++||||.+..+..+....|++. ....+...|.|||+.|.|...+... ..
T Consensus 234 fr~dy~~l~ilkrqf~---------~~~iigltatatn~vl~d~k~il~ie-~~~tf~a~fnr~nl~yev~qkp~n~-dd 302 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFK---------GAPIIGLTATATNHVLDDAKDILCIE-AAFTFRAGFNRPNLKYEVRQKPGNE-DD 302 (695)
T ss_pred cCcchHHHHHHHHhCC---------CCceeeeehhhhcchhhHHHHHHhHH-hhheeecccCCCCceeEeeeCCCCh-HH
Confidence 9999999999988887 89999999999999999999999875 4566788999999999998766543 22
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
+.+++.++
T Consensus 303 ~~edi~k~------------------------------------------------------------------------ 310 (695)
T KOG0353|consen 303 CIEDIAKL------------------------------------------------------------------------ 310 (695)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 33333222
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecC
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg 544 (679)
+.....+...||||-+++.++.++..|..+|+.+..||+
T Consensus 311 -----------------------------------------i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha 349 (695)
T KOG0353|consen 311 -----------------------------------------IKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHA 349 (695)
T ss_pred -----------------------------------------hccccCCCcceEEEeccccHHHHHHHHHhcCcccccccc
Confidence 223334668999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHH--------------------------
Q 005742 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ-------------------------- 598 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Q-------------------------- 598 (679)
.|.+++|.-+.+.|-.|++.|+|||-++++|||.|+|+.|||..+|.|++.|+|
T Consensus 350 ~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 350 NLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------HhhccccCCCCceEEEEecCCCCCccCCCCCCHHHHHH-HHHHHHHHHHhcCCCCcchHHHHH
Q 005742 599 -----------------EAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILV 660 (679)
Q Consensus 599 -----------------r~GRagR~G~~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~cr~~~l~ 660 (679)
..|||||+|.+..|++||...|..... +..++++ ..+.|-.|++||.+.+.|||..|.
T Consensus 430 levctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~s----smv~~e~~g~q~ly~mv~y~~d~s~crrv~la 505 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKIS----SMVQMENTGIQKLYEMVRYAADISKCRRVKLA 505 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHH----HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 889999999999999999877765332 2233332 345566788999999999999999
Q ss_pred hhhCCCCCCCCCC-CCCCC
Q 005742 661 EYFGEDFSHEKCQ-LYVNF 678 (679)
Q Consensus 661 ~~f~~~~~~~~c~-~c~~~ 678 (679)
++|+|-+++.-|+ +||||
T Consensus 506 ehfde~w~~~~c~k~cd~c 524 (695)
T KOG0353|consen 506 EHFDEAWEPEACNKMCDNC 524 (695)
T ss_pred HHHHhhcCHHHHHHHhhhh
Confidence 9999999887665 67666
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-57 Score=441.19 Aligned_cols=334 Identities=19% Similarity=0.256 Sum_probs=273.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+++++ .||..|+++|+++||.++.|+|+|..|+||||||.+|++|++. +...+|||+|||+|+.|+
T Consensus 67 gv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI 145 (476)
T KOG0330|consen 67 GVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQI 145 (476)
T ss_pred CcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHH
Confidence 567788888884 5899999999999999999999999999999999999999985 357999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005742 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+..+ |+.++.+.||..... +...+...+||+|+||++|++++.. .+.+++..++++|+||||+++++. |
T Consensus 146 ~e~fe~Lg~~iglr~~~lvGG~~m~~-q~~~L~kkPhilVaTPGrL~dhl~~-Tkgf~le~lk~LVlDEADrlLd~d--F 221 (476)
T KOG0330|consen 146 AEQFEALGSGIGLRVAVLVGGMDMML-QANQLSKKPHILVATPGRLWDHLEN-TKGFSLEQLKFLVLDEADRLLDMD--F 221 (476)
T ss_pred HHHHHHhccccCeEEEEEecCchHHH-HHHHhhcCCCEEEeCcHHHHHHHHh-ccCccHHHhHHHhhchHHhhhhhh--h
Confidence 9999887 677888877765543 5566677899999999999998875 456688899999999999999876 9
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005742 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
.+.+..| ++.+|+..|++++|||++.++.+.....+.- +..+.....+
T Consensus 222 ~~~ld~I-----------Lk~ip~erqt~LfsATMt~kv~kL~rasl~~--p~~v~~s~ky------------------- 269 (476)
T KOG0330|consen 222 EEELDYI-----------LKVIPRERQTFLFSATMTKKVRKLQRASLDN--PVKVAVSSKY------------------- 269 (476)
T ss_pred HHHHHHH-----------HHhcCccceEEEEEeecchhhHHHHhhccCC--CeEEeccchh-------------------
Confidence 9999998 6677789999999999999988766554431 1111111110
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005742 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
..+.++...|.
T Consensus 270 -~tv~~lkQ~yl-------------------------------------------------------------------- 280 (476)
T KOG0330|consen 270 -QTVDHLKQTYL-------------------------------------------------------------------- 280 (476)
T ss_pred -cchHHhhhheE--------------------------------------------------------------------
Confidence 01111111110
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005742 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
.+....|...++.+|.+. .+..+||||++...++.++-.|+..|+.+..+||.
T Consensus 281 --------------------------fv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGq 333 (476)
T KOG0330|consen 281 --------------------------FVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQ 333 (476)
T ss_pred --------------------------eccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccch
Confidence 000011222344444433 35899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
|++..|...++.|++|...||||||+++||+|+|.|++|||||+|.+..+|+||+||+||+|++|.++.|++..|..
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976654
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.4e-55 Score=479.46 Aligned_cols=332 Identities=22% Similarity=0.331 Sum_probs=263.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----------cCCeEEEEcCchH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLIS 224 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----------~~~~vLvl~Pt~~ 224 (679)
.+++.+.+.|. .+||.+|+|+|.++||.++.|+|+|+++|||||||++|++|++. .++.+|||+||++
T Consensus 136 ~l~~~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 56778888887 56999999999999999999999999999999999999999874 2678999999999
Q ss_pred HHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 225 L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
|+.|+.+.+.++ ++.+..++++..... +...+...++|+|+||++|.+++. .+...+.++++|||||||++++
T Consensus 215 La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~-q~~~l~~~~~IlVaTPgrL~d~l~--~~~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCNKFGASSKIRNTVAYGGVPKRG-QIYALRRGVEILIACPGRLIDFLE--SNVTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHHHHhcccCccEEEEeCCCCHHH-HHHHHHcCCCEEEECHHHHHHHHH--cCCCChhhCcEEEeehHHhhhh
Confidence 999999999886 356666776665544 344455678999999999999887 5566788999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccC---CCCcEEEEEec
Q 005742 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF---RPNLRFSVKHS 377 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---r~~~~~~v~~~ 377 (679)
+| |++.+.+| +..++++.|++++|||++..+.......+.. ....+...... ..++...+
T Consensus 292 ~g--f~~~i~~i-----------l~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~-~~v~i~vg~~~l~~~~~i~q~~--- 354 (545)
T PTZ00110 292 MG--FEPQIRKI-----------VSQIRPDRQTLMWSATWPKEVQSLARDLCKE-EPVHVNVGSLDLTACHNIKQEV--- 354 (545)
T ss_pred cc--hHHHHHHH-----------HHhCCCCCeEEEEEeCCCHHHHHHHHHHhcc-CCEEEEECCCccccCCCeeEEE---
Confidence 88 89888887 3334558899999999987765543333321 11111110000 00000000
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005742 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
T Consensus 355 -------------------------------------------------------------------------------- 354 (545)
T PTZ00110 355 -------------------------------------------------------------------------------- 354 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCC
Q 005742 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFG 536 (679)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~ 536 (679)
.......+...+..++.... ...++||||++++.++.+++.|...+
T Consensus 355 ---------------------------------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g 401 (545)
T PTZ00110 355 ---------------------------------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG 401 (545)
T ss_pred ---------------------------------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC
Confidence 00011122333334443333 46799999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+.+..+||++++++|+.++++|++|+.+|||||+++++|||+|+|++||+||+|.++++|+||+|||||.|+.|.+++|+
T Consensus 402 ~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 402 WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 005742 617 NLSSM 621 (679)
Q Consensus 617 ~~~~~ 621 (679)
++.+.
T Consensus 482 ~~~~~ 486 (545)
T PTZ00110 482 TPDKY 486 (545)
T ss_pred CcchH
Confidence 87654
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-54 Score=436.12 Aligned_cols=344 Identities=24% Similarity=0.312 Sum_probs=279.3
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---------------cCCeEEEEc
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------------TGKVVVVIS 220 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------------~~~~vLvl~ 220 (679)
.++.++.+++. ..||..|+|+|+.|||..++.+|+|.++.||||||++|++|++. .|+.++|++
T Consensus 251 ~~P~e~l~~I~-~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiila 329 (673)
T KOG0333|consen 251 GFPLELLSVIK-KPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILA 329 (673)
T ss_pred CCCHHHHHHHH-hcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeec
Confidence 57778888887 56999999999999999999999999999999999999999872 489999999
Q ss_pred CchHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccc
Q 005742 221 PLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (679)
Q Consensus 221 Pt~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH 296 (679)
|||+|++|+..+-.++ |++++.+.+|..... +.-.+..+++|+|+||++|.+.++ +..+.+++..+||+|||+
T Consensus 330 ptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EE-q~fqls~gceiviatPgrLid~Le--nr~lvl~qctyvvldead 406 (673)
T KOG0333|consen 330 PTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEE-QGFQLSMGCEIVIATPGRLIDSLE--NRYLVLNQCTYVVLDEAD 406 (673)
T ss_pred hHHHHHHHHHHHHHHhcccccceEEEEecccchhh-hhhhhhccceeeecCchHHHHHHH--HHHHHhccCceEeccchh
Confidence 9999999999887775 678888877766543 444567789999999999999888 778889999999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHhhccc--------------cccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEe
Q 005742 297 CVSKWGHDFRPDYRRLSVLRENFGAN--------------NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL 362 (679)
Q Consensus 297 ~l~~~g~~f~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 362 (679)
+|.++| |++++..+...+..-..+ ++..-..-.|+++||||+++.+......+|.- +..+..
T Consensus 407 rmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~--pv~vti 482 (673)
T KOG0333|consen 407 RMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR--PVVVTI 482 (673)
T ss_pred hhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC--CeEEEe
Confidence 999999 999998884433221110 00111122689999999999988877776641 222222
Q ss_pred cccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCC
Q 005742 363 TSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYD 442 (679)
Q Consensus 363 ~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (679)
....++.-+
T Consensus 483 g~~gk~~~r----------------------------------------------------------------------- 491 (673)
T KOG0333|consen 483 GSAGKPTPR----------------------------------------------------------------------- 491 (673)
T ss_pred ccCCCCccc-----------------------------------------------------------------------
Confidence 222222111
Q ss_pred CccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCch
Q 005742 443 DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTR 522 (679)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~ 522 (679)
..+.+.++....+...|.+.|.+. ...++|||+|++
T Consensus 492 -------------------------------------------veQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~k 527 (673)
T KOG0333|consen 492 -------------------------------------------VEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTK 527 (673)
T ss_pred -------------------------------------------hheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEech
Confidence 111222333344555566666655 356999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhc
Q 005742 523 KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602 (679)
Q Consensus 523 ~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 602 (679)
+.|+.||+.|.+.|+.++.+||+-++++|+.+++.|++|...|||||++++||||||+|++|||||+++++++|.||+||
T Consensus 528 k~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 528 KGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGR 607 (673)
T ss_pred hhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEecCCCCC
Q 005742 603 AGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 603 agR~G~~g~~~~l~~~~~~~ 622 (679)
|||+|+.|.++.|+++.+..
T Consensus 608 TgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 608 TGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred ccccccCceeEEEeccchhH
Confidence 99999999999999987743
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-54 Score=466.19 Aligned_cols=333 Identities=25% Similarity=0.359 Sum_probs=268.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc-----C--Ce-EEEEcCchHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-----G--KV-VVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~-----~--~~-vLvl~Pt~~L~~ 227 (679)
.+.+.+.+.|.+ .||..|+|+|..+||.++.|+|+++.|+||||||++|++|++.+ . .. +||++|||+|+.
T Consensus 35 ~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~ 113 (513)
T COG0513 35 GLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAV 113 (513)
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHH
Confidence 367778888875 69999999999999999999999999999999999999999852 1 12 999999999999
Q ss_pred HHHHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 228 DQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 228 q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
|+.+.+..+ ++.++.++||....... ..+..+++|||+||+++++++. .+.+.+.++.++|+||||+|+++|
T Consensus 114 Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~-~~l~~~~~ivVaTPGRllD~i~--~~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELRKLGKNLGGLRVAVVYGGVSIRKQI-EALKRGVDIVVATPGRLLDLIK--RGKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHHHHHhhcCCccEEEEECCCCHHHHH-HHHhcCCCEEEECccHHHHHHH--cCCcchhhcCEEEeccHhhhhcCC
Confidence 999998875 36677888887766544 5555569999999999999998 667889999999999999999998
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
|.+.+..| +..++.+.|++++|||++..+.......++-+ ..+.+......
T Consensus 191 --f~~~i~~I-----------~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p--------------~~i~v~~~~~~-- 241 (513)
T COG0513 191 --FIDDIEKI-----------LKALPPDRQTLLFSATMPDDIRELARRYLNDP--------------VEIEVSVEKLE-- 241 (513)
T ss_pred --CHHHHHHH-----------HHhCCcccEEEEEecCCCHHHHHHHHHHccCC--------------cEEEEcccccc--
Confidence 99999999 55566689999999999997666555555411 11111100000
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005742 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
...
T Consensus 242 -----------------------------------------------------------------------------~~~ 244 (513)
T COG0513 242 -----------------------------------------------------------------------------RTL 244 (513)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005742 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
..++++.+. +.....+..++..+.+.....++||||+|+..++.++..|...|+.+..+
T Consensus 245 ~~i~q~~~~---------------------v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~l 303 (513)
T COG0513 245 KKIKQFYLE---------------------VESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAAL 303 (513)
T ss_pred cCceEEEEE---------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEe
Confidence 001111111 01111133334444444445589999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
||+|++++|.++++.|++|+.+||||||+++||||||+|++|||||+|.++++|+||+|||||+|+.|.+++|+++.
T Consensus 304 hG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 304 HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-52 Score=453.09 Aligned_cols=330 Identities=20% Similarity=0.226 Sum_probs=257.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-------------cCCeEEEEcCc
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVISPL 222 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-------------~~~~vLvl~Pt 222 (679)
.+++.+.+.|. .+||..|+|+|.+|||.++.|+|++++||||||||++|++|++. .++++|||+||
T Consensus 14 ~l~~~l~~~l~-~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALE-KKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 57777888887 46999999999999999999999999999999999999999873 24689999999
Q ss_pred hHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 223 ~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
++|+.|+.+.+..+ ++.+..+.+|..... +...+...++|+|+||+++.+++. .+.+.+.++++|||||||++
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~-~~~~l~~~~~IlV~TP~~l~~~l~--~~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDK-QLKVLESGVDILIGTTGRLIDYAK--QNHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHH-HHHHhcCCCCEEEECHHHHHHHHH--cCCcccccccEEEEecHHHH
Confidence 99999998877664 677777776655433 444556678999999999998877 56677889999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCC--CCcEEEEEe
Q 005742 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR--PNLRFSVKH 376 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r--~~~~~~v~~ 376 (679)
.++| |...+..+... ++. ....+.+++|||++..........++.+ ..+....... ..+......
T Consensus 170 ~~~~--f~~~i~~i~~~---~~~------~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~ 236 (423)
T PRK04837 170 FDLG--FIKDIRWLFRR---MPP------ANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFY 236 (423)
T ss_pred hhcc--cHHHHHHHHHh---CCC------ccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEe
Confidence 9988 77777666322 110 0145679999999988777666555421 1111110000 000000000
Q ss_pred cCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 005742 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (679)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (679)
T Consensus 237 -------------------------------------------------------------------------------- 236 (423)
T PRK04837 237 -------------------------------------------------------------------------------- 236 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC
Q 005742 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (679)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~ 536 (679)
.....+...+...+.. ....++||||+++..++.+++.|...|
T Consensus 237 ------------------------------------~~~~~k~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g 279 (423)
T PRK04837 237 ------------------------------------PSNEEKMRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAADG 279 (423)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 0000122222233322 235789999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+.+..+||+|++++|..++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+
T Consensus 280 ~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~ 359 (423)
T PRK04837 280 HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA 359 (423)
T ss_pred CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 005742 617 NLS 619 (679)
Q Consensus 617 ~~~ 619 (679)
++.
T Consensus 360 ~~~ 362 (423)
T PRK04837 360 CEE 362 (423)
T ss_pred CHH
Confidence 754
No 15
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-53 Score=391.46 Aligned_cols=342 Identities=18% Similarity=0.291 Sum_probs=273.2
Q ss_pred ccCCCccccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeE
Q 005742 143 LAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVV 216 (679)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~v 216 (679)
.+++.+.+++ +.+.+...+= .+||.+|..+|+.|++.+++|+|+|+++..|+|||.+|-+.+++ +...+
T Consensus 24 ~v~~~F~~Mg----l~edlLrgiY-~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~ 98 (400)
T KOG0328|consen 24 KVIPTFDDMG----LKEDLLRGIY-AYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQA 98 (400)
T ss_pred ccccchhhcC----chHHHHHHHH-HhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeE
Confidence 4445566664 4445544444 45999999999999999999999999999999999999887774 46789
Q ss_pred EEEcCchHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEe
Q 005742 217 VVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAI 292 (679)
Q Consensus 217 Lvl~Pt~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvVi 292 (679)
|||+|||+|+.|+.+.+..+ ++.+....+|..-.+ ..+.+.-+.+++.+||+++.++++ .+.+..+.+.++|+
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge-dikkld~G~hvVsGtPGrv~dmik--r~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE-DIKKLDYGQHVVSGTPGRVLDMIK--RRSLRTRAVKMLVL 175 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch-hhhhhcccceEeeCCCchHHHHHH--hccccccceeEEEe
Confidence 99999999999999998886 456665666655443 333445678999999999999999 78888899999999
Q ss_pred ecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEE
Q 005742 293 DEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372 (679)
Q Consensus 293 DEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~ 372 (679)
||||.+++.| |..++-.+ ++.+|++.|++++|||++..+.+...+++ ..+++.
T Consensus 176 DEaDemL~kg--fk~Qiydi-----------yr~lp~~~Qvv~~SATlp~eilemt~kfm--------------tdpvri 228 (400)
T KOG0328|consen 176 DEADEMLNKG--FKEQIYDI-----------YRYLPPGAQVVLVSATLPHEILEMTEKFM--------------TDPVRI 228 (400)
T ss_pred ccHHHHHHhh--HHHHHHHH-----------HHhCCCCceEEEEeccCcHHHHHHHHHhc--------------CCceeE
Confidence 9999999888 88887777 67788899999999999999888665554 344444
Q ss_pred EEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCC
Q 005742 373 SVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMG 452 (679)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (679)
-++....... -+
T Consensus 229 lvkrdeltlE-----gI--------------------------------------------------------------- 240 (400)
T KOG0328|consen 229 LVKRDELTLE-----GI--------------------------------------------------------------- 240 (400)
T ss_pred EEecCCCchh-----hh---------------------------------------------------------------
Confidence 4443221110 00
Q ss_pred cchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHH
Q 005742 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL 532 (679)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L 532 (679)
.+|.....-++| +..-++.|-+.+.-.+++|||+|++.++.|.+.+
T Consensus 241 ----Kqf~v~ve~Eew------------------------------KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm 286 (400)
T KOG0328|consen 241 ----KQFFVAVEKEEW------------------------------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 286 (400)
T ss_pred ----hhheeeechhhh------------------------------hHhHHHHHhhhhehheEEEEecccchhhHHHHHH
Confidence 001111111111 1112334444555679999999999999999999
Q ss_pred HhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceE
Q 005742 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612 (679)
Q Consensus 533 ~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~ 612 (679)
++..+.+...||+|++++|+.++++|++|+.+||++|++.+||||+|.|++|||||+|.+.+.|+||+||.||.|++|.+
T Consensus 287 ~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 287 REANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred HhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 005742 613 VLYANLSSM 621 (679)
Q Consensus 613 ~~l~~~~~~ 621 (679)
+-|+...|.
T Consensus 367 inFVk~~d~ 375 (400)
T KOG0328|consen 367 INFVKSDDL 375 (400)
T ss_pred EEEecHHHH
Confidence 999975554
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.2e-53 Score=424.27 Aligned_cols=342 Identities=18% Similarity=0.252 Sum_probs=278.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----------cCCeEEEEcCch
Q 005742 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPLI 223 (679)
Q Consensus 154 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----------~~~~vLvl~Pt~ 223 (679)
...+++...+++. .+||.++|++|...|+.++.|+|+++.|.||+|||++|++|++. .+-.+|||+|||
T Consensus 86 ~~~LS~~t~kAi~-~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTR 164 (543)
T KOG0342|consen 86 EGSLSPLTLKAIK-EMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTR 164 (543)
T ss_pred ccccCHHHHHHHH-hcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccH
Confidence 3467777888887 67999999999999999999999999999999999999999974 366899999999
Q ss_pred HHHHHHHHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 224 SLMHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 224 ~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
+|+.|.+.+++++ ++.+..+.||......+.+ +..+++|+|+||++|.++++...+ +-.+.++++|+||||++
T Consensus 165 ELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k-l~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrl 242 (543)
T KOG0342|consen 165 ELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK-LVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRL 242 (543)
T ss_pred HHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH-hhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhh
Confidence 9999999988773 5666677766665554444 445899999999999999986555 34567899999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecC
Q 005742 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~ 378 (679)
+++| |+..+.+| ++.++...|.++||||.+..+.....-.|+ +.++++.+....
T Consensus 243 Ld~G--F~~di~~I-----------i~~lpk~rqt~LFSAT~~~kV~~l~~~~L~-------------~d~~~v~~~d~~ 296 (543)
T KOG0342|consen 243 LDIG--FEEDVEQI-----------IKILPKQRQTLLFSATQPSKVKDLARGALK-------------RDPVFVNVDDGG 296 (543)
T ss_pred hhcc--cHHHHHHH-----------HHhccccceeeEeeCCCcHHHHHHHHHhhc-------------CCceEeecCCCC
Confidence 9999 99999999 444566899999999999998775555443 222222222111
Q ss_pred CccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhh
Q 005742 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (679)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (679)
...
T Consensus 297 ~~~----------------------------------------------------------------------------- 299 (543)
T KOG0342|consen 297 ERE----------------------------------------------------------------------------- 299 (543)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred hhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCc
Q 005742 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538 (679)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~ 538 (679)
+.+.+++-++ ......+...++.+|++.....++||||+|...+..+++.|....+.
T Consensus 300 --The~l~Qgyv---------------------v~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlp 356 (543)
T KOG0342|consen 300 --THERLEQGYV---------------------VAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLP 356 (543)
T ss_pred --hhhcccceEE---------------------eccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCc
Confidence 0001111111 11112334566777888777789999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecC
Q 005742 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 539 ~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
|..+||+++|..|..+..+|++.+.-||||||+++||+|+|+|++||+||+|.++.+|+||+||+||.|+.|.++++..+
T Consensus 357 v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p 436 (543)
T KOG0342|consen 357 VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP 436 (543)
T ss_pred hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcc
Q 005742 619 SSMPTL 624 (679)
Q Consensus 619 ~~~~~~ 624 (679)
.+.+.+
T Consensus 437 ~El~Fl 442 (543)
T KOG0342|consen 437 WELGFL 442 (543)
T ss_pred hHHHHH
Confidence 876643
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.9e-52 Score=452.20 Aligned_cols=331 Identities=20% Similarity=0.270 Sum_probs=258.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------------CCeEEEEcCch
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------------GKVVVVISPLI 223 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------------~~~vLvl~Pt~ 223 (679)
.+.+.+.+.|. .+||..|+++|.++|+.+++|+|+++++|||+|||++|++|++.. ..++|||+||+
T Consensus 7 ~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptr 85 (456)
T PRK10590 7 GLSPDILRAVA-EQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (456)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcH
Confidence 46677888887 469999999999999999999999999999999999999999742 24799999999
Q ss_pred HHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 224 SLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 224 ~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+|+.|+.+.+..+ ++....+.++..... +...+.+.++|+|+||++|.+++. .....+.++++|||||||+++
T Consensus 86 eLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~IiV~TP~rL~~~~~--~~~~~l~~v~~lViDEah~ll 162 (456)
T PRK10590 86 ELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-QMMKLRGGVDVLVATPGRLLDLEH--QNAVKLDQVEILVLDEADRML 162 (456)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-HHHHHcCCCcEEEEChHHHHHHHH--cCCcccccceEEEeecHHHHh
Confidence 9999999998875 566666666655443 344556778999999999988776 555678899999999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCC
Q 005742 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (679)
Q Consensus 300 ~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~ 379 (679)
+++ |...+..+ +..++...|++++|||++..........+..+....+.........+...+...
T Consensus 163 ~~~--~~~~i~~i-----------l~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-- 227 (456)
T PRK10590 163 DMG--FIHDIRRV-----------LAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFV-- 227 (456)
T ss_pred ccc--cHHHHHHH-----------HHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEc--
Confidence 988 77776665 333445789999999998776554444443211000000000000110000000
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
T Consensus 228 -------------------------------------------------------------------------------- 227 (456)
T PRK10590 228 -------------------------------------------------------------------------------- 227 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcE
Q 005742 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~ 539 (679)
+ ......++..+.......++||||+++..++.+++.|...++.+
T Consensus 228 ----------------------------------~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~ 272 (456)
T PRK10590 228 ----------------------------------D-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRS 272 (456)
T ss_pred ----------------------------------C-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCE
Confidence 0 00111222333333335689999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 540 ~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+...
T Consensus 273 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 273 AAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred C
Q 005742 620 S 620 (679)
Q Consensus 620 ~ 620 (679)
+
T Consensus 353 d 353 (456)
T PRK10590 353 E 353 (456)
T ss_pred H
Confidence 4
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.4e-52 Score=454.69 Aligned_cols=330 Identities=21% Similarity=0.284 Sum_probs=255.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-------------cCCeEEEEcCc
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVISPL 222 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-------------~~~~vLvl~Pt 222 (679)
.+++.+.+.|. ..||..|+|+|.+||+.++.|+|+++++|||||||++|++|++. .++++|||+||
T Consensus 127 ~l~~~l~~~L~-~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PT 205 (518)
T PLN00206 127 GLPPKLLLNLE-TAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205 (518)
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCC
Confidence 57778888887 46999999999999999999999999999999999999999873 35789999999
Q ss_pred hHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 223 ~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
++|+.|+.+.++.+ ++....+.+|..... +...+..+++|+|+||++|.+++. .+...+.++++|||||||++
T Consensus 206 reLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~-q~~~l~~~~~IiV~TPgrL~~~l~--~~~~~l~~v~~lViDEad~m 282 (518)
T PLN00206 206 RELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQ-QLYRIQQGVELIVGTPGRLIDLLS--KHDIELDNVSVLVLDEVDCM 282 (518)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHH-HHHHhcCCCCEEEECHHHHHHHHH--cCCccchheeEEEeecHHHH
Confidence 99999988887765 455666666655443 333456678999999999999887 55667889999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecC
Q 005742 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~ 378 (679)
+++| |++.+..+... + +..|++++|||++..+.......+. ....+......+++......
T Consensus 283 l~~g--f~~~i~~i~~~---l---------~~~q~l~~SATl~~~v~~l~~~~~~--~~~~i~~~~~~~~~~~v~q~--- 343 (518)
T PLN00206 283 LERG--FRDQVMQIFQA---L---------SQPQVLLFSATVSPEVEKFASSLAK--DIILISIGNPNRPNKAVKQL--- 343 (518)
T ss_pred hhcc--hHHHHHHHHHh---C---------CCCcEEEEEeeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCcceeEE---
Confidence 9998 88887766322 1 2679999999998876543333321 11111111111111000000
Q ss_pred CccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhh
Q 005742 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (679)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (679)
T Consensus 344 -------------------------------------------------------------------------------- 343 (518)
T PLN00206 344 -------------------------------------------------------------------------------- 343 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHh-CC
Q 005742 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCG-FG 536 (679)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~ 536 (679)
........+...+++.+.... ...++||||+++..++.+++.|.. .+
T Consensus 344 -------------------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g 392 (518)
T PLN00206 344 -------------------------------AIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTG 392 (518)
T ss_pred -------------------------------EEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccC
Confidence 000000112223333333222 135899999999999999999975 68
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+
T Consensus 393 ~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 393 LKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred cceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 005742 617 NLS 619 (679)
Q Consensus 617 ~~~ 619 (679)
+..
T Consensus 473 ~~~ 475 (518)
T PLN00206 473 NEE 475 (518)
T ss_pred chh
Confidence 754
No 19
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-53 Score=412.61 Aligned_cols=358 Identities=20% Similarity=0.293 Sum_probs=281.2
Q ss_pred CCCCccccCCcccCCCcc-ccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh
Q 005742 132 MDCNLKAESDSLAVSCPK-EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210 (679)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l 210 (679)
+.++...+.+..|++.|. .++..+..-+++.+.++ +.||.+|+|+|.+|||.+|+|.|++.+|.||+|||++|++|.+
T Consensus 201 it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIk-K~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ 279 (629)
T KOG0336|consen 201 ITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIK-KTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGF 279 (629)
T ss_pred EEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHH-hccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccce
Confidence 333444444444444322 23444455566777776 4599999999999999999999999999999999999999987
Q ss_pred c------------cCCeEEEEcCchHHHHHHHHHHHhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHH
Q 005742 211 L------------TGKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLI 275 (679)
Q Consensus 211 ~------------~~~~vLvl~Pt~~L~~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll 275 (679)
. .++.+|+++||++|+.|+.-+..++ +.+.+++++|..... +...+.++++|+|+||++|.++.
T Consensus 280 ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-qie~lkrgveiiiatPgrlndL~ 358 (629)
T KOG0336|consen 280 IHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-QIEDLKRGVEIIIATPGRLNDLQ 358 (629)
T ss_pred eeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-HHHHHhcCceEEeeCCchHhhhh
Confidence 3 3789999999999999999988886 677777776665544 45567778999999999999887
Q ss_pred HHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCC
Q 005742 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS 355 (679)
Q Consensus 276 ~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 355 (679)
- .+.+++..+.++|+||||+|+++| |++.+++| +-..+|+.|+++-|||++..+......++.-
T Consensus 359 ~--~n~i~l~siTYlVlDEADrMLDMg--FEpqIrki-----------lldiRPDRqtvmTSATWP~~VrrLa~sY~Ke- 422 (629)
T KOG0336|consen 359 M--DNVINLASITYLVLDEADRMLDMG--FEPQIRKI-----------LLDIRPDRQTVMTSATWPEGVRRLAQSYLKE- 422 (629)
T ss_pred h--cCeeeeeeeEEEEecchhhhhccc--ccHHHHHH-----------hhhcCCcceeeeecccCchHHHHHHHHhhhC-
Confidence 7 778889999999999999999999 99999999 5667789999999999999998877776642
Q ss_pred CCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCC
Q 005742 356 KGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPN 435 (679)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (679)
+..++..++.-... ..|+.
T Consensus 423 -p~~v~vGsLdL~a~-~sVkQ----------------------------------------------------------- 441 (629)
T KOG0336|consen 423 -PMIVYVGSLDLVAV-KSVKQ----------------------------------------------------------- 441 (629)
T ss_pred -ceEEEecccceeee-eeeee-----------------------------------------------------------
Confidence 22222222211100 00000
Q ss_pred CCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcE
Q 005742 436 IGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLT 515 (679)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 515 (679)
.........+....-.++...-...++
T Consensus 442 -----------------------------------------------------~i~v~~d~~k~~~~~~f~~~ms~ndKv 468 (629)
T KOG0336|consen 442 -----------------------------------------------------NIIVTTDSEKLEIVQFFVANMSSNDKV 468 (629)
T ss_pred -----------------------------------------------------eEEecccHHHHHHHHHHHHhcCCCceE
Confidence 000000011111122222333346699
Q ss_pred EEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHH
Q 005742 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595 (679)
Q Consensus 516 IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~ 595 (679)
||||..+..++.|...|+-.|+.+..+||+-++.+|+..++.|++|+++|||||++++||||++++.+|++||+|.+++.
T Consensus 469 IiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIee 548 (629)
T KOG0336|consen 469 IIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEE 548 (629)
T ss_pred EEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCceEEEEecCCCC
Q 005742 596 YYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 596 y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
|+||+||+||+|+.|.++.|++..|.
T Consensus 549 YVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 549 YVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred HHHHhcccccCCCCcceEEEEehhhH
Confidence 99999999999999999999986553
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-53 Score=424.16 Aligned_cols=336 Identities=23% Similarity=0.309 Sum_probs=264.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---------cCCeEEEEcCchHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGKVVVVISPLISLM 226 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------~~~~vLvl~Pt~~L~ 226 (679)
.++..+.+++. .+||..|+|+|..+||.++-|+|++.+|.||||||.+|++|++. ...+||||+|||+|+
T Consensus 187 NLSRPlLka~~-~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 187 NLSRPLLKACS-TLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred ccchHHHHHHH-hcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 45666777776 67999999999999999999999999999999999999999984 245999999999998
Q ss_pred HHHHHHHHh---c-CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 227 HDQCSKLSK---H-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 227 ~q~~~~l~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
.|++...++ | .+.++...||. +-..+...++..++|||+||++|.+++++ ...+.+.++..+|+||||||++.|
T Consensus 266 iQv~sV~~qlaqFt~I~~~L~vGGL-~lk~QE~~LRs~PDIVIATPGRlIDHlrN-s~sf~ldsiEVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 266 IQVHSVTKQLAQFTDITVGLAVGGL-DLKAQEAVLRSRPDIVIATPGRLIDHLRN-SPSFNLDSIEVLVLDEADRMLEEG 343 (691)
T ss_pred HHHHHHHHHHHhhccceeeeeecCc-cHHHHHHHHhhCCCEEEecchhHHHHhcc-CCCccccceeEEEechHHHHHHHH
Confidence 777766555 4 46666655554 44556777888899999999999988874 335678899999999999999988
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
|+..+..|..+ ++.+.|+++||||++..+...+.-.| .++..++..+..+...
T Consensus 344 --FademnEii~l-----------cpk~RQTmLFSATMteeVkdL~slSL--~kPvrifvd~~~~~a~------------ 396 (691)
T KOG0338|consen 344 --FADEMNEIIRL-----------CPKNRQTMLFSATMTEEVKDLASLSL--NKPVRIFVDPNKDTAP------------ 396 (691)
T ss_pred --HHHHHHHHHHh-----------ccccccceeehhhhHHHHHHHHHhhc--CCCeEEEeCCccccch------------
Confidence 99999999544 44589999999999988776444444 3444444433221110
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005742 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
.+.+.+..+.
T Consensus 397 -~LtQEFiRIR--------------------------------------------------------------------- 406 (691)
T KOG0338|consen 397 -KLTQEFIRIR--------------------------------------------------------------------- 406 (691)
T ss_pred -hhhHHHheec---------------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005742 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
+ .....+...+..++...+ ..++|||+.|++.|..+.-.|--.|+++.-+
T Consensus 407 -----------------~------------~re~dRea~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agEl 456 (691)
T KOG0338|consen 407 -----------------P------------KREGDREAMLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGEL 456 (691)
T ss_pred -----------------c------------ccccccHHHHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhh
Confidence 0 000011112222222222 6789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005742 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
||.++|.+|-..++.|++++++|||||++++|||||+.|.+||||++|.+...|+||+||++|+|+.|.+++|+..++.
T Consensus 457 HGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 457 HGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred cccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987754
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-51 Score=455.42 Aligned_cols=331 Identities=21% Similarity=0.323 Sum_probs=262.3
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.++|. .+||.+|+|+|.++|+.+++|+|+|++||||+|||++|++|++. .++++|||+||++|+.|+
T Consensus 12 ~L~~~ll~al~-~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 12 GLKAPILEALN-DLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHH
Confidence 46777888887 56999999999999999999999999999999999999999873 456999999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
++.+.++ ++.++.++++.... .+...+...++|+|+||+++.+++. .+.+.+.++.+|||||||+++.+|
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~-~q~~~l~~~~~IVVgTPgrl~d~l~--r~~l~l~~l~~lVlDEAd~ml~~g-- 165 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYD-VQLRALRQGPQIVVGTPGRLLDHLK--RGTLDLSKLSGLVLDEADEMLRMG-- 165 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHH-HHHHHhcCCCCEEEECHHHHHHHHH--cCCcchhhceEEEeccHHHHhhcc--
Confidence 9888765 56777777765543 3455566779999999999998877 566778899999999999999988
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
|...+..+ +..++...|+++||||++.........++.-+....+.......+++.....
T Consensus 166 f~~di~~I-----------l~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~--------- 225 (629)
T PRK11634 166 FIEDVETI-----------MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYW--------- 225 (629)
T ss_pred cHHHHHHH-----------HHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEE---------
Confidence 77777666 3445568899999999988766544444432110000000000111100000
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
T Consensus 226 -------------------------------------------------------------------------------- 225 (629)
T PRK11634 226 -------------------------------------------------------------------------------- 225 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecC
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg 544 (679)
......+...+...|.. ....++||||+++..++.+++.|...++.+..+||
T Consensus 226 ---------------------------~v~~~~k~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhg 277 (629)
T PRK11634 226 ---------------------------TVWGMRKNEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNG 277 (629)
T ss_pred ---------------------------EechhhHHHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeC
Confidence 00001122333333332 23568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
+|++.+|+.++++|++|+++|||||+++++|||+|+|++||+||+|.++++|+||+|||||.|+.|.+++|+++.+
T Consensus 278 d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998654
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-51 Score=448.04 Aligned_cols=329 Identities=18% Similarity=0.233 Sum_probs=260.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------CCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+...|. .+||.+|+|+|.+|++.+++|+|++++||||+|||++|++|++.. ..++|||+||++|+.|+
T Consensus 10 ~l~~~l~~~l~-~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~ 88 (460)
T PRK11776 10 PLPPALLANLN-ELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQV 88 (460)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHH
Confidence 46677777887 569999999999999999999999999999999999999999852 45899999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.+.++.+ ++.+..+++|..... +...+...++|+|+||+++.+++. .+.+.+.++++||+||||+++++|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~Gg~~~~~-~~~~l~~~~~IvV~Tp~rl~~~l~--~~~~~l~~l~~lViDEad~~l~~g-- 163 (460)
T PRK11776 89 AKEIRRLARFIPNIKVLTLCGGVPMGP-QIDSLEHGAHIIVGTPGRILDHLR--KGTLDLDALNTLVLDEADRMLDMG-- 163 (460)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCChHH-HHHHhcCCCCEEEEChHHHHHHHH--cCCccHHHCCEEEEECHHHHhCcC--
Confidence 9988875 456666666655443 445556779999999999998877 556678899999999999999988
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccC-CCCcEEEEEecCCccch
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF-RPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~-r~~~~~~v~~~~~~~~~ 383 (679)
|...+..+ +..++...|++++|||++..........+..+ ..+...... .+.+......
T Consensus 164 ~~~~l~~i-----------~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~i~~~~~~------- 223 (460)
T PRK11776 164 FQDAIDAI-----------IRQAPARRQTLLFSATYPEGIAAISQRFQRDP--VEVKVESTHDLPAIEQRFYE------- 223 (460)
T ss_pred cHHHHHHH-----------HHhCCcccEEEEEEecCcHHHHHHHHHhcCCC--EEEEECcCCCCCCeeEEEEE-------
Confidence 88877776 34455678999999999877655444433211 111111100 0001000000
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005742 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 224 -------------------------------------------------------------------------------- 223 (460)
T PRK11776 224 -------------------------------------------------------------------------------- 223 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEec
Q 005742 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~h 543 (679)
.....+...+...+ ......++||||++++.++.+++.|...++.+..+|
T Consensus 224 -----------------------------~~~~~k~~~l~~ll-~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~h 273 (460)
T PRK11776 224 -----------------------------VSPDERLPALQRLL-LHHQPESCVVFCNTKKECQEVADALNAQGFSALALH 273 (460)
T ss_pred -----------------------------eCcHHHHHHHHHHH-HhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEe
Confidence 00011222233333 233457899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 544 g~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|+|++++|+.+++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|+.|.+++|+++.+
T Consensus 274 g~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-51 Score=410.23 Aligned_cols=339 Identities=19% Similarity=0.262 Sum_probs=278.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---------cC--CeEEEEcCchH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TG--KVVVVISPLIS 224 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------~~--~~vLvl~Pt~~ 224 (679)
++.+.+..++. ..||..+||+|..+||.++.++|++|-++||||||++|++|++. +. .-+|||+|||+
T Consensus 12 ~L~~~l~~~l~-~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRE 90 (567)
T KOG0345|consen 12 PLSPWLLEALD-ESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRE 90 (567)
T ss_pred CccHHHHHHHH-hcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHH
Confidence 46788888887 56999999999999999999999999999999999999999983 23 37999999999
Q ss_pred HHHHHHHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 225 LMHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 225 L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
|+.|+.+.+..| .+.+..+.||.............+++|+|+||++|.+++..-...++++.+.++|+||||+++
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHh
Confidence 999999888775 466788888877766666677788999999999999999854556667799999999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCC
Q 005742 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (679)
Q Consensus 300 ~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~ 379 (679)
++| |...++.| +..+|...++=+||||.+..+.......| |.++++.|.....
T Consensus 171 dmg--Fe~~~n~I-----------Ls~LPKQRRTGLFSATq~~~v~dL~raGL--------------RNpv~V~V~~k~~ 223 (567)
T KOG0345|consen 171 DMG--FEASVNTI-----------LSFLPKQRRTGLFSATQTQEVEDLARAGL--------------RNPVRVSVKEKSK 223 (567)
T ss_pred ccc--HHHHHHHH-----------HHhcccccccccccchhhHHHHHHHHhhc--------------cCceeeeeccccc
Confidence 999 99999998 66677788999999999988776443333 4455555443221
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
+.. | ..+...
T Consensus 224 ~~t---------------------------------------------------P------------------S~L~~~- 233 (567)
T KOG0345|consen 224 SAT---------------------------------------------------P------------------SSLALE- 233 (567)
T ss_pred ccC---------------------------------------------------c------------------hhhcce-
Confidence 110 0 000000
Q ss_pred hccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--CC
Q 005742 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GV 537 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~ 537 (679)
........|...++++|.. ....++|||.+|...++.....|... ..
T Consensus 234 ------------------------------Y~v~~a~eK~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~ 282 (567)
T KOG0345|consen 234 ------------------------------YLVCEADEKLSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKR 282 (567)
T ss_pred ------------------------------eeEecHHHHHHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCC
Confidence 0111233456666777666 34679999999999999999998764 67
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005742 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 538 ~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
.+..+||.|++.+|..+++.|++..-.+|+|||+++||||||+||+||+||+|.++..|+||+|||||.|+.|.+++|+.
T Consensus 283 ~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 283 EIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred cEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 89999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 005742 618 LSSMPT 623 (679)
Q Consensus 618 ~~~~~~ 623 (679)
+.+..+
T Consensus 363 p~E~aY 368 (567)
T KOG0345|consen 363 PREEAY 368 (567)
T ss_pred ccHHHH
Confidence 865543
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-52 Score=398.96 Aligned_cols=337 Identities=17% Similarity=0.237 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------CCeEEEEcCchHHHHHHH
Q 005742 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQC 230 (679)
Q Consensus 157 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------~~~vLvl~Pt~~L~~q~~ 230 (679)
+.+++.+.|+ .+|+.+|||+|..+||.+|+|+|+|.+|.||||||++|.+|++.+ +.-+||+.|||+|+.|..
T Consensus 14 l~~Wlve~l~-~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~Qia 92 (442)
T KOG0340|consen 14 LSPWLVEQLK-ALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIA 92 (442)
T ss_pred ccHHHHHHHH-HhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHH
Confidence 4444455555 679999999999999999999999999999999999999999963 678999999999999999
Q ss_pred HHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHH--HHHHhhcCceEEEeecccccccCCCC
Q 005742 231 SKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL--QRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 231 ~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~--~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
+.|... +++++++.+|... -.+...+...+||||+|||++.+++... .....+.++.++|+||||++++-.
T Consensus 93 EQF~alGk~l~lK~~vivGG~d~-i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~-- 169 (442)
T KOG0340|consen 93 EQFIALGKLLNLKVSVIVGGTDM-IMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC-- 169 (442)
T ss_pred HHHHHhcccccceEEEEEccHHH-hhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--
Confidence 999875 5677777766544 3355556777999999999999877632 123457889999999999998755
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
|...+.-+ +..+|...|.++||||++...... .+.+-. .++.+..........
T Consensus 170 f~d~L~~i-----------~e~lP~~RQtLlfSATitd~i~ql----~~~~i~----------k~~a~~~e~~~~vst-- 222 (442)
T KOG0340|consen 170 FPDILEGI-----------EECLPKPRQTLLFSATITDTIKQL----FGCPIT----------KSIAFELEVIDGVST-- 222 (442)
T ss_pred hhhHHhhh-----------hccCCCccceEEEEeehhhHHHHh----hcCCcc----------cccceEEeccCCCCc--
Confidence 78887777 566777889999999997665442 221100 001111111111000
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
.+.+ ...|+
T Consensus 223 -vetL------------------------------------------------------------------~q~yI---- 231 (442)
T KOG0340|consen 223 -VETL------------------------------------------------------------------YQGYI---- 231 (442)
T ss_pred -hhhh------------------------------------------------------------------hhhee----
Confidence 0000 00000
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC--CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
......+-.-++..|.... +.+.++||+++..+|+.|+..|...++.+..+
T Consensus 232 ---------------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~l 284 (442)
T KOG0340|consen 232 ---------------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSL 284 (442)
T ss_pred ---------------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeeh
Confidence 0000111112223333222 36799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
|+.|++++|-..+.+|+++..+||||||+++||+|||.|++|||||+|.++.+|+||+||++|+|+.|.++.+++..|+.
T Consensus 285 Hs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 285 HSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred hhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977765
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-51 Score=452.64 Aligned_cols=332 Identities=20% Similarity=0.263 Sum_probs=258.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc-------------CCeEEEEcCc
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-------------GKVVVVISPL 222 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~-------------~~~vLvl~Pt 222 (679)
.+.+.+.+.|. .+||..|+|+|.++||.+++|+|+++++|||||||++|++|++.. .+++|||+||
T Consensus 15 ~l~~~l~~~L~-~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PT 93 (572)
T PRK04537 15 DLHPALLAGLE-SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPT 93 (572)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCc
Confidence 46677888887 569999999999999999999999999999999999999998741 3689999999
Q ss_pred hHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 223 ~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
++|+.|+.+.+.++ ++.+..++++.... .+...+...++|+|+||++|.+++.. ...+.+..+++|||||||++
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~-~q~~~l~~~~dIiV~TP~rL~~~l~~-~~~~~l~~v~~lViDEAh~l 171 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYD-KQRELLQQGVDVIIATPGRLIDYVKQ-HKVVSLHACEICVLDEADRM 171 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHH-HHHHHHhCCCCEEEECHHHHHHHHHh-ccccchhheeeeEecCHHHH
Confidence 99999999998876 46666777665543 34555667789999999999987762 12456778999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEeccc--CCCCcEEEEEe
Q 005742 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF--FRPNLRFSVKH 376 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--~r~~~~~~v~~ 376 (679)
+++| |...+..+....... ...|+++||||++..+...+...+..+ ..+..... ....+...+..
T Consensus 172 ld~g--f~~~i~~il~~lp~~---------~~~q~ll~SATl~~~v~~l~~~~l~~p--~~i~v~~~~~~~~~i~q~~~~ 238 (572)
T PRK04537 172 FDLG--FIKDIRFLLRRMPER---------GTRQTLLFSATLSHRVLELAYEHMNEP--EKLVVETETITAARVRQRIYF 238 (572)
T ss_pred hhcc--hHHHHHHHHHhcccc---------cCceEEEEeCCccHHHHHHHHHHhcCC--cEEEeccccccccceeEEEEe
Confidence 9988 777776663221110 157899999999988777666655321 11111100 00000000000
Q ss_pred cCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 005742 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (679)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (679)
T Consensus 239 -------------------------------------------------------------------------------- 238 (572)
T PRK04537 239 -------------------------------------------------------------------------------- 238 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC
Q 005742 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (679)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~ 536 (679)
.....+...++.++.. ....++||||++++.++.+++.|...+
T Consensus 239 ------------------------------------~~~~~k~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g 281 (572)
T PRK04537 239 ------------------------------------PADEEKQTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHG 281 (572)
T ss_pred ------------------------------------cCHHHHHHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcC
Confidence 0001122223333322 235689999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~ 361 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFA 361 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 005742 617 NLSS 620 (679)
Q Consensus 617 ~~~~ 620 (679)
...+
T Consensus 362 ~~~~ 365 (572)
T PRK04537 362 CERY 365 (572)
T ss_pred cHHH
Confidence 7543
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3e-52 Score=403.46 Aligned_cols=341 Identities=21% Similarity=0.304 Sum_probs=274.8
Q ss_pred cccCCCccccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----------
Q 005742 142 SLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------- 211 (679)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---------- 211 (679)
+.|+.++.++. |+..+...|++ .|+.+|||+|.+.+|.++.|+|.|.+|-||||||++|.+|++.
T Consensus 166 pPPIksF~eMK----FP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 166 PPPIKSFKEMK----FPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred CCchhhhhhcc----CCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 34556666664 56667777775 5999999999999999999999999999999999999999863
Q ss_pred ----cCCeEEEEcCchHHHHHHHHHHHhc-------C---CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHH
Q 005742 212 ----TGKVVVVISPLISLMHDQCSKLSKH-------G---VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277 (679)
Q Consensus 212 ----~~~~vLvl~Pt~~L~~q~~~~l~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~ 277 (679)
.|+..|||||+|+|+.|.+.-+..+ | ++.....+|.+. ..+...+..+.||+|+||++|.+++.
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v-~eql~~v~~GvHivVATPGRL~DmL~- 318 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV-REQLDVVRRGVHIVVATPGRLMDMLA- 318 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH-HHHHHHHhcCeeEEEcCcchHHHHHH-
Confidence 4899999999999999887766553 3 344444555544 44666778889999999999999999
Q ss_pred HHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCC
Q 005742 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357 (679)
Q Consensus 278 ~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~ 357 (679)
++..++.-.+++++||||+|.++| |+..++.+- .+.+...|+++||||++..++......|-
T Consensus 319 -KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF-----------~~FK~QRQTLLFSATMP~KIQ~FAkSALV---- 380 (610)
T KOG0341|consen 319 -KKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIF-----------SFFKGQRQTLLFSATMPKKIQNFAKSALV---- 380 (610)
T ss_pred -HhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHH-----------HHHhhhhheeeeeccccHHHHHHHHhhcc----
Confidence 778888889999999999999999 999998883 33344789999999999887765544442
Q ss_pred ceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCC
Q 005742 358 TKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIG 437 (679)
Q Consensus 358 ~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (679)
.++.+.|....... .+-++
T Consensus 381 ----------KPvtvNVGRAGAAs----ldViQ----------------------------------------------- 399 (610)
T KOG0341|consen 381 ----------KPVTVNVGRAGAAS----LDVIQ----------------------------------------------- 399 (610)
T ss_pred ----------cceEEecccccccc----hhHHH-----------------------------------------------
Confidence 22333322211000 01111
Q ss_pred CCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEE
Q 005742 438 DGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTII 517 (679)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IV 517 (679)
.++.+....|...+++-|++. ..++||
T Consensus 400 ---------------------------------------------------evEyVkqEaKiVylLeCLQKT--~PpVLI 426 (610)
T KOG0341|consen 400 ---------------------------------------------------EVEYVKQEAKIVYLLECLQKT--SPPVLI 426 (610)
T ss_pred ---------------------------------------------------HHHHHHhhhhhhhHHHHhccC--CCceEE
Confidence 112222234555666667665 569999
Q ss_pred EeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHH
Q 005742 518 YVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597 (679)
Q Consensus 518 F~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~ 597 (679)
||..+..++.+.+||--.|+.++.+||+..+++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..++.|+
T Consensus 427 FaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYV 506 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYV 506 (610)
T ss_pred EeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCceEEEEecCCCC
Q 005742 598 QEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 598 Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
||+||+||.|+.|.+.+|++....
T Consensus 507 HRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 507 HRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred HHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999986543
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-52 Score=417.11 Aligned_cols=372 Identities=20% Similarity=0.240 Sum_probs=270.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------------cCCeEEEEcCch
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLI 223 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------------~~~~vLvl~Pt~ 223 (679)
.+++.+.+.|...+++..||.+|+++||.+++|+|++|.++||||||++|++|+++ .|..+|||||||
T Consensus 142 GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTR 221 (708)
T KOG0348|consen 142 GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTR 221 (708)
T ss_pred CCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechH
Confidence 56677778888889999999999999999999999999999999999999999984 388999999999
Q ss_pred HHHHHHHHHHHhcC-----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 224 SLMHDQCSKLSKHG-----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 224 ~L~~q~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
+||.|.++.+.++- |-.+.+.|| .....+...++.+.+|+|+||++|.+++.. ...+.+.++++||+||+|++
T Consensus 222 EL~~Q~y~~~qKLl~~~hWIVPg~lmGG-EkkKSEKARLRKGiNILIgTPGRLvDHLkn-T~~i~~s~LRwlVlDEaDrl 299 (708)
T KOG0348|consen 222 ELALQIYETVQKLLKPFHWIVPGVLMGG-EKKKSEKARLRKGINILIGTPGRLVDHLKN-TKSIKFSRLRWLVLDEADRL 299 (708)
T ss_pred HHHHHHHHHHHHHhcCceEEeeceeecc-cccccHHHHHhcCceEEEcCchHHHHHHhc-cchheeeeeeEEEecchhHH
Confidence 99999999998852 223334444 344456677888999999999999998875 44567888999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhhc--cccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEe
Q 005742 299 SKWGHDFRPDYRRLSVLRENFG--ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~ 376 (679)
++.| |+..+..|........ ...-..+++..|.+++|||++..+....--.|+ +++.+....
T Consensus 300 leLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLk--------------Dpv~I~ld~ 363 (708)
T KOG0348|consen 300 LELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLK--------------DPVYISLDK 363 (708)
T ss_pred Hhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcccc--------------Cceeeeccc
Confidence 9999 9999999877764321 112344566788999999998887663322221 222222100
Q ss_pred cCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 005742 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (679)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (679)
..... . .....+.+.. ...+.+.. +......++.
T Consensus 364 s~~~~---~-p~~~a~~ev~-----------------------------------------~~~~~~~l-~~~~iPeqL~ 397 (708)
T KOG0348|consen 364 SHSQL---N-PKDKAVQEVD-----------------------------------------DGPAGDKL-DSFAIPEQLL 397 (708)
T ss_pred hhhhc---C-cchhhhhhcC-----------------------------------------Cccccccc-ccccCcHHhh
Confidence 00000 0 0000000000 00000000 0000000000
Q ss_pred hhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHHHH
Q 005742 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLC 533 (679)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~L~ 533 (679)
+ .+..+...-++..|..+|... ....++|||..+.+.++.-+++|.
T Consensus 398 q-------------------------------ry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~ 446 (708)
T KOG0348|consen 398 Q-------------------------------RYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFS 446 (708)
T ss_pred h-------------------------------ceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHH
Confidence 0 011111112333344444333 334589999999999999999887
Q ss_pred h----------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC
Q 005742 534 G----------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ 591 (679)
Q Consensus 534 ~----------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~ 591 (679)
+ .+.++..+||+|++++|..+++.|...+-.||+|||+++||+|+|+|++||+||+|.
T Consensus 447 ~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~ 526 (708)
T KOG0348|consen 447 EALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF 526 (708)
T ss_pred hhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC
Confidence 6 255789999999999999999999998888999999999999999999999999999
Q ss_pred CHHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 592 SLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 592 s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
+..+|+||+||++|+|..|.+++|..+.+..
T Consensus 527 s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 527 STADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred CHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 9999999999999999999999999888765
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.2e-51 Score=440.48 Aligned_cols=331 Identities=20% Similarity=0.314 Sum_probs=259.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc----------CCeEEEEcCchHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT----------GKVVVVISPLISL 225 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~----------~~~vLvl~Pt~~L 225 (679)
.+.+.+.+.|. .+||.+|+++|.++++.+++|+|+++++|||+|||++|++|++.. ..++|||+||++|
T Consensus 7 ~l~~~l~~~l~-~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eL 85 (434)
T PRK11192 7 ELDESLLEALQ-DKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTREL 85 (434)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHH
Confidence 46667778887 469999999999999999999999999999999999999999741 4689999999999
Q ss_pred HHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC
Q 005742 226 MHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 226 ~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~ 301 (679)
+.|+.+.+..+ ++.+..+.++..... +...+.+.++|+|+||++|.+++. .+.+.+.++++|||||||+++++
T Consensus 86 a~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-~~~~l~~~~~IlV~Tp~rl~~~~~--~~~~~~~~v~~lViDEah~~l~~ 162 (434)
T PRK11192 86 AMQVADQARELAKHTHLDIATITGGVAYMN-HAEVFSENQDIVVATPGRLLQYIK--EENFDCRAVETLILDEADRMLDM 162 (434)
T ss_pred HHHHHHHHHHHHccCCcEEEEEECCCCHHH-HHHHhcCCCCEEEEChHHHHHHHH--cCCcCcccCCEEEEECHHHHhCC
Confidence 99998887764 567777776655443 445566778999999999998876 55667789999999999999998
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCC--CCcEEEEEecCC
Q 005742 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR--PNLRFSVKHSKT 379 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r--~~~~~~v~~~~~ 379 (679)
| |...+..+.. ..+...|+++||||++.....++...+... +..+......+ .++.
T Consensus 163 ~--~~~~~~~i~~-----------~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~-------- 220 (434)
T PRK11192 163 G--FAQDIETIAA-----------ETRWRKQTLLFSATLEGDAVQDFAERLLND-PVEVEAEPSRRERKKIH-------- 220 (434)
T ss_pred C--cHHHHHHHHH-----------hCccccEEEEEEeecCHHHHHHHHHHHccC-CEEEEecCCcccccCce--------
Confidence 8 8888877732 223367899999999876666666554211 11111110000 0000
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
T Consensus 221 -------------------------------------------------------------------------------- 220 (434)
T PRK11192 221 -------------------------------------------------------------------------------- 220 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcE
Q 005742 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~ 539 (679)
+|... .+.......++..+.+.....++||||++++.++.+++.|...++.+
T Consensus 221 -------~~~~~---------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 272 (434)
T PRK11192 221 -------QWYYR---------------------ADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINC 272 (434)
T ss_pred -------EEEEE---------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCE
Confidence 00000 00001122233333333346799999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 540 ~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+...|+||+|||||.|+.|.+++|++..
T Consensus 273 ~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~ 352 (434)
T PRK11192 273 CYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAH 352 (434)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999744
Q ss_pred C
Q 005742 620 S 620 (679)
Q Consensus 620 ~ 620 (679)
+
T Consensus 353 d 353 (434)
T PRK11192 353 D 353 (434)
T ss_pred H
Confidence 3
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-50 Score=438.80 Aligned_cols=331 Identities=18% Similarity=0.239 Sum_probs=257.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc-------------CCeEEEEcCc
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-------------GKVVVVISPL 222 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~-------------~~~vLvl~Pt 222 (679)
.+++.+.++|.+ +||..|+++|.++|+.+++|+|+|+++|||||||++|++|++.. .+++|||+||
T Consensus 93 ~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Pt 171 (475)
T PRK01297 93 NLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPT 171 (475)
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCc
Confidence 577888999985 79999999999999999999999999999999999999999742 4689999999
Q ss_pred hHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 223 ~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
++|+.|+.+.++.+ ++.+..+.+|..............++|+|+||++|..++. .....+.++++|||||||++
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~--~~~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 172 RELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQ--RGEVHLDMVEVMVLDEADRM 249 (475)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHH--cCCcccccCceEEechHHHH
Confidence 99999999988775 5667777776555444444445678999999999987766 44556788999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc--cCCCCcEEEEEe
Q 005742 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRPNLRFSVKH 376 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~r~~~~~~v~~ 376 (679)
.+++ |.+.+.++...... ....|++++|||++.........++..+ ..+.... ...+++...+..
T Consensus 250 ~~~~--~~~~l~~i~~~~~~---------~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~ 316 (475)
T PRK01297 250 LDMG--FIPQVRQIIRQTPR---------KEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYA 316 (475)
T ss_pred Hhcc--cHHHHHHHHHhCCC---------CCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEE
Confidence 9887 77777766332211 1256899999999877666555544311 1110000 000000000000
Q ss_pred cCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 005742 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (679)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (679)
T Consensus 317 -------------------------------------------------------------------------------- 316 (475)
T PRK01297 317 -------------------------------------------------------------------------------- 316 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC
Q 005742 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (679)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~ 536 (679)
.....+...+..++ ......++||||++++.++.+++.|...+
T Consensus 317 ------------------------------------~~~~~k~~~l~~ll-~~~~~~~~IVF~~s~~~~~~l~~~L~~~~ 359 (475)
T PRK01297 317 ------------------------------------VAGSDKYKLLYNLV-TQNPWERVMVFANRKDEVRRIEERLVKDG 359 (475)
T ss_pred ------------------------------------ecchhHHHHHHHHH-HhcCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 00001111222222 22235689999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+.+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+||+|.|..+|+||+|||||.|+.|.+++|+
T Consensus 360 ~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 360 INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 005742 617 NLS 619 (679)
Q Consensus 617 ~~~ 619 (679)
...
T Consensus 440 ~~~ 442 (475)
T PRK01297 440 GED 442 (475)
T ss_pred cHH
Confidence 744
No 30
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-51 Score=418.42 Aligned_cols=334 Identities=20% Similarity=0.295 Sum_probs=266.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----------------cCCeEEEE
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------------TGKVVVVI 219 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----------------~~~~vLvl 219 (679)
.+.+.+...++ +.++..|+|+|+.+||.+..|+|++++|+||+|||.+|++|++. ..+.+||+
T Consensus 80 ~l~~~l~~ni~-~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIl 158 (482)
T KOG0335|consen 80 ILGEALAGNIK-RSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALIL 158 (482)
T ss_pred chhHHHhhccc-cccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEE
Confidence 45555555555 55999999999999999999999999999999999999999983 14899999
Q ss_pred cCchHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecc
Q 005742 220 SPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEV 295 (679)
Q Consensus 220 ~Pt~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEa 295 (679)
+|||+|+.|.+.+.+++ ++..+.++++.. ...+......+++|+|+||++|.++++ .+.+.+.+++++|+|||
T Consensus 159 apTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~-~~~q~~~~~~gcdIlvaTpGrL~d~~e--~g~i~l~~~k~~vLDEA 235 (482)
T KOG0335|consen 159 APTRELVDQIYNEARKFSYLSGMKSVVVYGGTD-LGAQLRFIKRGCDILVATPGRLKDLIE--RGKISLDNCKFLVLDEA 235 (482)
T ss_pred eCcHHHhhHHHHHHHhhcccccceeeeeeCCcc-hhhhhhhhccCccEEEecCchhhhhhh--cceeehhhCcEEEecch
Confidence 99999999999999997 466777777733 334555667789999999999999999 88889999999999999
Q ss_pred ccccc-CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEE
Q 005742 296 HCVSK-WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374 (679)
Q Consensus 296 H~l~~-~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v 374 (679)
|+|++ +| |.|.+++|........ ....|.++||||.+......+...+.- . .+.+.+
T Consensus 236 DrMlD~mg--F~p~Ir~iv~~~~~~~-------~~~~qt~mFSAtfp~~iq~l~~~fl~~--~-----------yi~laV 293 (482)
T KOG0335|consen 236 DRMLDEMG--FEPQIRKIVEQLGMPP-------KNNRQTLLFSATFPKEIQRLAADFLKD--N-----------YIFLAV 293 (482)
T ss_pred HHhhhhcc--ccccHHHHhcccCCCC-------ccceeEEEEeccCChhhhhhHHHHhhc--c-----------ceEEEE
Confidence 99999 88 9999999954322211 236889999999999888744444320 1 111111
Q ss_pred EecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcc
Q 005742 375 KHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (679)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (679)
........
T Consensus 294 ~rvg~~~~------------------------------------------------------------------------ 301 (482)
T KOG0335|consen 294 GRVGSTSE------------------------------------------------------------------------ 301 (482)
T ss_pred eeeccccc------------------------------------------------------------------------
Confidence 11110000
Q ss_pred hhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC---CCC-----cEEEEeCchhHHH
Q 005742 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL---EDG-----LTIIYVPTRKETL 526 (679)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~-----~~IVF~~t~~~~~ 526 (679)
...+....+....+...++++|.... ..+ +++|||.+++.++
T Consensus 302 ------------------------------ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d 351 (482)
T KOG0335|consen 302 ------------------------------NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGAD 351 (482)
T ss_pred ------------------------------cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhh
Confidence 00001111222334455555554433 223 8999999999999
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccC
Q 005742 527 SIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (679)
Q Consensus 527 ~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 606 (679)
.++.+|...++.+..+||..++.+|.+.++.|++|++.+||||++++||||+|+|++||+||+|.+..+|+||+|||||.
T Consensus 352 ~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 352 ELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred HHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEec
Q 005742 607 GHLADCVLYAN 617 (679)
Q Consensus 607 G~~g~~~~l~~ 617 (679)
|+.|.++.|++
T Consensus 432 Gn~G~atsf~n 442 (482)
T KOG0335|consen 432 GNGGRATSFFN 442 (482)
T ss_pred CCCceeEEEec
Confidence 99999999998
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-50 Score=405.09 Aligned_cols=363 Identities=21% Similarity=0.250 Sum_probs=266.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc-----------------cCC--e
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL-----------------TGK--V 215 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~-----------------~~~--~ 215 (679)
.++.++..+|. .+||..|+++|...||++..| .|++..|.||||||++|.+|++. +.+ .
T Consensus 187 ~lp~~iL~aL~-~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~ 265 (731)
T KOG0347|consen 187 FLPMEILRALS-NLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPI 265 (731)
T ss_pred CCCHHHHHHHH-hcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcce
Confidence 67788889997 679999999999999999999 69999999999999999999985 234 4
Q ss_pred EEEEcCchHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHH-HHhhcCceEE
Q 005742 216 VVVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR-LAESRGIALF 290 (679)
Q Consensus 216 vLvl~Pt~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~-~~~~~~~~lv 290 (679)
.||++|||+|+.|+...+... ++++..+.||..... +++.+...++|||+||++|+.++..-.. .-++.++.++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-QqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcL 344 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-QQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCL 344 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-HHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEE
Confidence 999999999999999988774 788888887776654 5566777899999999999999874333 4467889999
Q ss_pred EeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCc
Q 005742 291 AIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNL 370 (679)
Q Consensus 291 ViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~ 370 (679)
|+||+|||.+.|| |.+.-.-|..+. -....+..|++.||||++-.....+...-...
T Consensus 345 VlDEaDRmvekgh-F~Els~lL~~L~-------e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~--------------- 401 (731)
T KOG0347|consen 345 VLDEADRMVEKGH-FEELSKLLKHLN-------EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKK--------------- 401 (731)
T ss_pred EEccHHHHhhhcc-HHHHHHHHHHhh-------hhhcccccceEEEEEEeehhhcChhHHhhhcc---------------
Confidence 9999999999886 554433332222 12233467999999999765443332211100
Q ss_pred EEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCC
Q 005742 371 RFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSP 450 (679)
Q Consensus 371 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (679)
.....+...+..++....... ++..+ +.....
T Consensus 402 ---------~k~~~~~~kiq~Lmk~ig~~~----kpkii-----------------------------------D~t~q~ 433 (731)
T KOG0347|consen 402 ---------DKEDELNAKIQHLMKKIGFRG----KPKII-----------------------------------DLTPQS 433 (731)
T ss_pred ---------chhhhhhHHHHHHHHHhCccC----CCeeE-----------------------------------ecCcch
Confidence 000123333444443322111 10000 000000
Q ss_pred CCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHH
Q 005742 451 MGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAK 530 (679)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~ 530 (679)
.......+-+......+.+..+..| |... +|++|||||+++.+.+|+-
T Consensus 434 ~ta~~l~Es~I~C~~~eKD~ylyYf------------------------------l~ry--PGrTlVF~NsId~vKRLt~ 481 (731)
T KOG0347|consen 434 ATASTLTESLIECPPLEKDLYLYYF------------------------------LTRY--PGRTLVFCNSIDCVKRLTV 481 (731)
T ss_pred hHHHHHHHHhhcCCccccceeEEEE------------------------------Eeec--CCceEEEechHHHHHHHHH
Confidence 0000000011111112222111111 1222 7899999999999999999
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCc
Q 005742 531 YLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA 610 (679)
Q Consensus 531 ~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g 610 (679)
+|..+++....+|+.|.|++|-+.+++|++..-.||||||+++||+|||.|.+||||.+|.+.+-|+||.||++|++..|
T Consensus 482 ~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G 561 (731)
T KOG0347|consen 482 LLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG 561 (731)
T ss_pred HHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCc
Q 005742 611 DCVLYANLSSMPT 623 (679)
Q Consensus 611 ~~~~l~~~~~~~~ 623 (679)
..++++.+.+...
T Consensus 562 vsvml~~P~e~~~ 574 (731)
T KOG0347|consen 562 VSVMLCGPQEVGP 574 (731)
T ss_pred eEEEEeChHHhHH
Confidence 9999999887543
No 32
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-50 Score=404.16 Aligned_cols=338 Identities=20% Similarity=0.298 Sum_probs=272.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----------cCCeEEEEcCchH
Q 005742 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPLIS 224 (679)
Q Consensus 155 ~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----------~~~~vLvl~Pt~~ 224 (679)
+++.....+.|++. +|-.++.+|+.+||.+|+|+|+|..|.||||||++|++|++. .|--+|||+|||+
T Consensus 74 lpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRE 152 (758)
T KOG0343|consen 74 LPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRE 152 (758)
T ss_pred CCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHH
Confidence 36777888888865 899999999999999999999999999999999999999985 3778999999999
Q ss_pred HHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 225 L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
|+.|.+..|.+. .+.+..+.||..... +...+. ..+|+||||++|+.+++. .-.++..++.++|+||||++++
T Consensus 153 LA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-E~eRi~-~mNILVCTPGRLLQHmde-~~~f~t~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 153 LALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-ELERIS-QMNILVCTPGRLLQHMDE-NPNFSTSNLQMLVLDEADRMLD 229 (758)
T ss_pred HHHHHHHHHHHHhhccccccceeecCchhHH-HHHhhh-cCCeEEechHHHHHHhhh-cCCCCCCcceEEEeccHHHHHH
Confidence 999999999885 466777777766433 333333 479999999999988874 2245667899999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCc
Q 005742 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~ 380 (679)
+| |...+..| +.++|+..|+|+||||.+..+.....-.|. .+..+.+.....
T Consensus 230 MG--Fk~tL~~I-----------i~~lP~~RQTLLFSATqt~svkdLaRLsL~--------------dP~~vsvhe~a~- 281 (758)
T KOG0343|consen 230 MG--FKKTLNAI-----------IENLPKKRQTLLFSATQTKSVKDLARLSLK--------------DPVYVSVHENAV- 281 (758)
T ss_pred Hh--HHHHHHHH-----------HHhCChhheeeeeecccchhHHHHHHhhcC--------------CCcEEEEecccc-
Confidence 99 99999988 777888999999999999887664433332 222222221100
Q ss_pred cchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhh
Q 005742 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (679)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (679)
...+..+.
T Consensus 282 --~atP~~L~---------------------------------------------------------------------- 289 (758)
T KOG0343|consen 282 --AATPSNLQ---------------------------------------------------------------------- 289 (758)
T ss_pred --ccChhhhh----------------------------------------------------------------------
Confidence 00111111
Q ss_pred ccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--CCc
Q 005742 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVK 538 (679)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~ 538 (679)
+.+..+....|...|..++..++ ..+.|||+.|.+++..+++.++.. |+.
T Consensus 290 ---------------------------Q~y~~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~ 341 (758)
T KOG0343|consen 290 ---------------------------QSYVIVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIP 341 (758)
T ss_pred ---------------------------heEEEEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCc
Confidence 11112223345555555555554 679999999999999999999874 889
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecC
Q 005742 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 539 ~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
+..+||.|++..|..+...|-..+--||+||++++||+|+|.|++||++|.|.++.+|+||+||++|.+..|.+++++.+
T Consensus 342 l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 342 LLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred eeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 005742 619 SSMPTL 624 (679)
Q Consensus 619 ~~~~~~ 624 (679)
++...+
T Consensus 422 sEeE~~ 427 (758)
T KOG0343|consen 422 SEEEAM 427 (758)
T ss_pred hhHHHH
Confidence 985444
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.6e-48 Score=437.59 Aligned_cols=351 Identities=22% Similarity=0.262 Sum_probs=249.7
Q ss_pred cccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHH
Q 005742 151 VEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISL 225 (679)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L 225 (679)
.+.+.++++.+.++|+ ..||.+|+++|.+||+.+++|+|+++++|||||||++|++|++. ++.++|||+||++|
T Consensus 15 ~~~~~~l~~~l~~~L~-~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraL 93 (742)
T TIGR03817 15 APWPAWAHPDVVAALE-AAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKAL 93 (742)
T ss_pred CCCCCcCCHHHHHHHH-HcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHH
Confidence 3344567888999997 46999999999999999999999999999999999999999984 35799999999999
Q ss_pred HHHHHHHHHhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHH-HHHHH-HHHHhhcCceEEEeeccccccc
Q 005742 226 MHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-LIKPL-QRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 226 ~~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~~~-~~~~~~~~~~lvViDEaH~l~~ 300 (679)
+.|+.+.++++ ++.+..+.|+.. .. ++..+...++|+|+||+++.. ++... .....+.++++|||||||++.+
T Consensus 94 a~q~~~~l~~l~~~~i~v~~~~Gdt~-~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELTLRGVRPATYDGDTP-TE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCCC-HH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999987 355555555444 32 334455668999999999874 22211 1112368899999999999965
Q ss_pred -CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC--CcEEEEEec
Q 005742 301 -WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP--NLRFSVKHS 377 (679)
Q Consensus 301 -~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~--~~~~~v~~~ 377 (679)
.|..+...++++..+...+ +.++|++++|||++.... ....+++. +.. +......+ ...+.....
T Consensus 172 ~fg~~~~~il~rL~ri~~~~--------g~~~q~i~~SATi~n~~~-~~~~l~g~--~~~-~i~~~~~~~~~~~~~~~~p 239 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARY--------GASPVFVLASATTADPAA-AASRLIGA--PVV-AVTEDGSPRGARTVALWEP 239 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhc--------CCCCEEEEEecCCCCHHH-HHHHHcCC--CeE-EECCCCCCcCceEEEEecC
Confidence 3333444555555544433 336899999999976532 23333332 121 12111111 111111100
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005742 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
... .. . +.. ..
T Consensus 240 ~~~----------~~----~-------------------------------------------------~~~--~~---- 250 (742)
T TIGR03817 240 PLT----------EL----T-------------------------------------------------GEN--GA---- 250 (742)
T ss_pred Ccc----------cc----c-------------------------------------------------ccc--cc----
Confidence 000 00 0 000 00
Q ss_pred hhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--
Q 005742 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-- 535 (679)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-- 535 (679)
+ ........+...+..++.. ..++||||+|++.++.++..|.+.
T Consensus 251 ------------------------~-------~r~~~~~~~~~~l~~l~~~---~~~~IVF~~sr~~ae~l~~~l~~~l~ 296 (742)
T TIGR03817 251 ------------------------P-------VRRSASAEAADLLADLVAE---GARTLTFVRSRRGAELVAAIARRLLG 296 (742)
T ss_pred ------------------------c-------cccchHHHHHHHHHHHHHC---CCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 0 0000000111122222222 569999999999999999998763
Q ss_pred ------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCC
Q 005742 536 ------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609 (679)
Q Consensus 536 ------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~ 609 (679)
+.++..|||++++++|+.++++|++|++++||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.
T Consensus 297 ~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~ 376 (742)
T TIGR03817 297 EVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQG 376 (742)
T ss_pred hhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCC
Q 005742 610 ADCVLYANLS 619 (679)
Q Consensus 610 g~~~~l~~~~ 619 (679)
|.+++++...
T Consensus 377 g~ai~v~~~~ 386 (742)
T TIGR03817 377 ALVVLVARDD 386 (742)
T ss_pred cEEEEEeCCC
Confidence 9999998643
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-50 Score=377.60 Aligned_cols=331 Identities=20% Similarity=0.294 Sum_probs=262.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------CCeEEEEcCchHHHHHHHH
Q 005742 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 158 ~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------~~~vLvl~Pt~~L~~q~~~ 231 (679)
..++..-+- ..||..|.|+|.++||.++.|+|+++.|..|+|||.+|.+|.+.+ .-.++|++|||+|+-|..+
T Consensus 93 kr~LLmgIf-e~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq 171 (459)
T KOG0326|consen 93 KRELLMGIF-EKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ 171 (459)
T ss_pred hHHHHHHHH-HhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH
Confidence 333433333 249999999999999999999999999999999999999999963 4589999999999876665
Q ss_pred HHHh---c-CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchH
Q 005742 232 KLSK---H-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (679)
Q Consensus 232 ~l~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~ 307 (679)
.+.. + ++.+.+..||..-.+ ....+....|++|+||++++++.. ++...+++...+|+||||.+++.. |.+
T Consensus 172 vc~~lskh~~i~vmvttGGT~lrD-DI~Rl~~~VH~~vgTPGRIlDL~~--KgVa~ls~c~~lV~DEADKlLs~~--F~~ 246 (459)
T KOG0326|consen 172 VCKELSKHLGIKVMVTTGGTSLRD-DIMRLNQTVHLVVGTPGRILDLAK--KGVADLSDCVILVMDEADKLLSVD--FQP 246 (459)
T ss_pred HHHHHhcccCeEEEEecCCccccc-ceeeecCceEEEEcCChhHHHHHh--cccccchhceEEEechhhhhhchh--hhh
Confidence 5544 3 666666666655433 333456678999999999999998 788889999999999999998754 899
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhH
Q 005742 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~ 387 (679)
.+.++ +..+|...|++++|||.+-.+.....+.++-+ +.+..
T Consensus 247 ~~e~l-----------i~~lP~~rQillySATFP~tVk~Fm~~~l~kP--------------y~INL------------- 288 (459)
T KOG0326|consen 247 IVEKL-----------ISFLPKERQILLYSATFPLTVKGFMDRHLKKP--------------YEINL------------- 288 (459)
T ss_pred HHHHH-----------HHhCCccceeeEEecccchhHHHHHHHhccCc--------------ceeeh-------------
Confidence 98888 66788899999999999998888777776532 11110
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccc
Q 005742 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
++.+.. ..+.+
T Consensus 289 -----M~eLtl----------------------------------------------------------------~GvtQ 299 (459)
T KOG0326|consen 289 -----MEELTL----------------------------------------------------------------KGVTQ 299 (459)
T ss_pred -----hhhhhh----------------------------------------------------------------cchhh
Confidence 000000 00000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCC
Q 005742 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (679)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~ 547 (679)
|+ ..+...+|... +..|...+.-.+.||||++.+.++.+|..+.+.|+.+.++|+.|-
T Consensus 300 yY---------------------afV~e~qKvhC-LntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~ 357 (459)
T KOG0326|consen 300 YY---------------------AFVEERQKVHC-LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMA 357 (459)
T ss_pred he---------------------eeechhhhhhh-HHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHH
Confidence 00 01111122222 233344445678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCc
Q 005742 548 KSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (679)
Q Consensus 548 ~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~ 623 (679)
+++|.+++..|++|.++.|||||.+.||||+++|++||+||+|++.++|+||+||+||.|..|.++-+++..|...
T Consensus 358 Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 358 QEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred HhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999777543
No 35
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.9e-48 Score=419.21 Aligned_cols=330 Identities=20% Similarity=0.260 Sum_probs=250.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+.+.|. .+||..|+|+|.+|++.+++|+|+++++|||+|||++|++|++. .+.++|||+||++|+.|+
T Consensus 34 ~l~~~~~~~l~-~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~ 112 (401)
T PTZ00424 34 KLNEDLLRGIY-SYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQI 112 (401)
T ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHH
Confidence 35666777776 56999999999999999999999999999999999999999874 367899999999999999
Q ss_pred HHHHHhcC----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005742 230 CSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+.+..++ +.+....++..... ....+...++|+|+||+++.+++. .+...+.++++|||||||++.+++ |
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~Tp~~l~~~l~--~~~~~l~~i~lvViDEah~~~~~~--~ 187 (401)
T PTZ00424 113 QKVVLALGDYLKVRCHACVGGTVVRD-DINKLKAGVHMVVGTPGRVYDMID--KRHLRVDDLKLFILDEADEMLSRG--F 187 (401)
T ss_pred HHHHHHHhhhcCceEEEEECCcCHHH-HHHHHcCCCCEEEECcHHHHHHHH--hCCcccccccEEEEecHHHHHhcc--h
Confidence 98887763 34444444444333 334455668999999999988776 455668899999999999998877 6
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc--cCCCCcEEEEEecCCccch
Q 005742 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~r~~~~~~v~~~~~~~~~ 383 (679)
...+..+ ++.+++..|++++|||++..........+..+ ..+.... .....+........
T Consensus 188 ~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----- 249 (401)
T PTZ00424 188 KGQIYDV-----------FKKLPPDVQVALFSATMPNEILELTTKFMRDP--KRILVKKDELTLEGIRQFYVAVE----- 249 (401)
T ss_pred HHHHHHH-----------HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCC--EEEEeCCCCcccCCceEEEEecC-----
Confidence 6555544 33445588999999999876655444433211 1100000 00000000000000
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005742 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 250 -------------------------------------------------------------------------------- 249 (401)
T PTZ00424 250 -------------------------------------------------------------------------------- 249 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEec
Q 005742 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~h 543 (679)
....+... +..+.+.....++||||++++.++.+++.|...++.+..+|
T Consensus 250 ------------------------------~~~~~~~~-l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h 298 (401)
T PTZ00424 250 ------------------------------KEEWKFDT-LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMH 298 (401)
T ss_pred ------------------------------hHHHHHHH-HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEe
Confidence 00001111 11222223356899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 544 g~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|+|++++|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997544
No 36
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-48 Score=388.75 Aligned_cols=338 Identities=20% Similarity=0.283 Sum_probs=285.0
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----------cCCeEEEEcC
Q 005742 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISP 221 (679)
Q Consensus 153 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----------~~~~vLvl~P 221 (679)
..+.+.+.+..++++. .|.+|+|+|.+++|.++.|+|++.+|.||||||.+|+.|++. .++..||+||
T Consensus 226 eh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvP 304 (731)
T KOG0339|consen 226 EHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVP 304 (731)
T ss_pred hhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEec
Confidence 3456678888888754 799999999999999999999999999999999999999974 3789999999
Q ss_pred chHHHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccc
Q 005742 222 LISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297 (679)
Q Consensus 222 t~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~ 297 (679)
|++|+.|++.++++| +++++.+++|.+... +.+.+..++.|||+||++|++++. .+..++.++.++|||||++
T Consensus 305 Trela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e-Q~k~Lk~g~EivVaTPgRlid~Vk--mKatn~~rvS~LV~DEadr 381 (731)
T KOG0339|consen 305 TRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE-QSKELKEGAEIVVATPGRLIDMVK--MKATNLSRVSYLVLDEADR 381 (731)
T ss_pred cHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH-HHHhhhcCCeEEEechHHHHHHHH--hhcccceeeeEEEEechhh
Confidence 999999999988886 788888888877654 555566889999999999999988 7888999999999999999
Q ss_pred cccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEec
Q 005742 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377 (679)
Q Consensus 298 l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~ 377 (679)
|.++| |+++++.| -..++++.|+|+||||....+.......|.- +++......
T Consensus 382 mfdmG--fe~qVrSI-----------~~hirpdrQtllFsaTf~~kIe~lard~L~d--------------pVrvVqg~v 434 (731)
T KOG0339|consen 382 MFDMG--FEPQVRSI-----------KQHIRPDRQTLLFSATFKKKIEKLARDILSD--------------PVRVVQGEV 434 (731)
T ss_pred hhccc--cHHHHHHH-----------HhhcCCcceEEEeeccchHHHHHHHHHHhcC--------------CeeEEEeeh
Confidence 99999 99999999 3455679999999999998887766666642 222222110
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005742 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
.... .++.+.+
T Consensus 435 gean-----~dITQ~V---------------------------------------------------------------- 445 (731)
T KOG0339|consen 435 GEAN-----EDITQTV---------------------------------------------------------------- 445 (731)
T ss_pred hccc-----cchhhee----------------------------------------------------------------
Confidence 0000 0000000
Q ss_pred hhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCC
Q 005742 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537 (679)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~ 537 (679)
........|+..+++.|-+....+++|||+.-+..++.++..|...++
T Consensus 446 --------------------------------~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 446 --------------------------------SVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred --------------------------------eeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 001122357788888888888889999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005742 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 538 ~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
++..+||+|.+.+|.+++..|+.+...|||||+++++|+|||++..||+||+-.+++.|.||+||+||+|.+|.+++|++
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 005742 618 LSSMP 622 (679)
Q Consensus 618 ~~~~~ 622 (679)
..|..
T Consensus 574 eKDa~ 578 (731)
T KOG0339|consen 574 EKDAE 578 (731)
T ss_pred hhhHH
Confidence 76644
No 37
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-47 Score=377.54 Aligned_cols=335 Identities=21% Similarity=0.341 Sum_probs=268.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------------cCCeEEEEcCch
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLI 223 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------------~~~~vLvl~Pt~ 223 (679)
.+.+.+..++. .+||..||-+|..|||-+++|+|+++.|.||||||.+|++|+++ .++.++|||||+
T Consensus 25 gLD~RllkAi~-~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 25 GLDSRLLKAIT-KLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred CCCHHHHHHHH-HhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 67778888887 56999999999999999999999999999999999999999985 478999999999
Q ss_pred HHHHHHHHHHHhc------CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHH-HhhcCceEEEeeccc
Q 005742 224 SLMHDQCSKLSKH------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL-AESRGIALFAIDEVH 296 (679)
Q Consensus 224 ~L~~q~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~-~~~~~~~lvViDEaH 296 (679)
+|++|.+..+.++ .++++-+.+...+... +.++.+.++|+|+||+++.+++. .+. ..+..+.++|+||||
T Consensus 104 EL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~-~~~L~d~pdIvV~TP~~ll~~~~--~~~~~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 104 ELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN-SVALMDLPDIVVATPAKLLRHLA--AGVLEYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH-HHHHccCCCeEEeChHHHHHHHh--hccchhhhheeeEEechhh
Confidence 9999999988775 3555666655555443 36677889999999999998887 443 567789999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEe
Q 005742 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376 (679)
Q Consensus 297 ~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~ 376 (679)
.++..| |++.+..| ...+|+..|.++||||+..++...-.-.++ .++.+.+..
T Consensus 181 LllsfG--Yeedlk~l-----------~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~--------------nPviLkl~e 233 (569)
T KOG0346|consen 181 LLLSFG--YEEDLKKL-----------RSHLPRIYQCFLMSATLSDDVQALKKLFLH--------------NPVILKLTE 233 (569)
T ss_pred hhhhcc--cHHHHHHH-----------HHhCCchhhheeehhhhhhHHHHHHHHhcc--------------CCeEEEecc
Confidence 999999 89999998 556778899999999998777652222222 122222111
Q ss_pred cCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 005742 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (679)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (679)
....
T Consensus 234 ~el~---------------------------------------------------------------------------- 237 (569)
T KOG0346|consen 234 GELP---------------------------------------------------------------------------- 237 (569)
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 1000
Q ss_pred hhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC
Q 005742 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (679)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~ 536 (679)
..+.+.++.+.|. ...+...++.+|+-.+-.++.|||+||++.|-.|.-.|.+.|
T Consensus 238 ----~~dqL~Qy~v~cs---------------------e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG 292 (569)
T KOG0346|consen 238 ----NPDQLTQYQVKCS---------------------EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG 292 (569)
T ss_pred ----CcccceEEEEEec---------------------cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC
Confidence 0011122222221 112333344444444447899999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----------------------------------ccccCcccccc
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----------------------------------AFGMGIDKLNV 581 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----------------------------------~~~~GiDip~v 581 (679)
++.+.++|.|+...|-.++++|..|-++++|||| -.+||||+.+|
T Consensus 293 iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V 372 (569)
T KOG0346|consen 293 IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHV 372 (569)
T ss_pred cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchhe
Confidence 9999999999999999999999999999999999 24689999999
Q ss_pred cEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 582 RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 582 ~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
..|||||+|.+...|+||+|||+|++++|.++.|+.+.+..
T Consensus 373 ~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 373 SNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred eeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 99999999999999999999999999999999999877544
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-47 Score=411.85 Aligned_cols=336 Identities=22% Similarity=0.335 Sum_probs=278.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----------cCCeEEEEcCchH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLIS 224 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----------~~~~vLvl~Pt~~ 224 (679)
.+...+...+ +.+||..|+|+|.+|||+++.|+|+|.+|.||||||++|++|++. .|+.+||++||++
T Consensus 371 gl~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtre 449 (997)
T KOG0334|consen 371 GLSSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRE 449 (997)
T ss_pred CchHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHH
Confidence 4556677778 478999999999999999999999999999999999999999983 4899999999999
Q ss_pred HHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHH-HHHhhcCceEEEeecccccc
Q 005742 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 225 L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~-~~~~~~~~~lvViDEaH~l~ 299 (679)
|+.|+.+++++| ++.++.++++....+ +...+..++.|+|+||+++++++.... ...++.++.++|+||||+|.
T Consensus 450 la~QI~r~~~kf~k~l~ir~v~vygg~~~~~-qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmf 528 (997)
T KOG0334|consen 450 LAMQIHREVRKFLKLLGIRVVCVYGGSGISQ-QIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMF 528 (997)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecCCccHHH-HHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhh
Confidence 999999998886 788888887776655 444455569999999999998776333 24556778899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCC
Q 005742 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (679)
Q Consensus 300 ~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~ 379 (679)
++| |.|...+| ++++++..|++++|||.+..+.......++.+-...+...+..-..+...+..
T Consensus 529 dmg--fePq~~~I-----------i~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V--- 592 (997)
T KOG0334|consen 529 DMG--FEPQITRI-----------LQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV--- 592 (997)
T ss_pred eec--cCcccchH-----------HhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE---
Confidence 999 99998887 67778899999999999988766666666532221111111111111111111
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
T Consensus 593 -------------------------------------------------------------------------------- 592 (997)
T KOG0334|consen 593 -------------------------------------------------------------------------------- 592 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcE
Q 005742 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~ 539 (679)
......|...++++|.+....+++||||.....|+.+.+.|.+.|+.+
T Consensus 593 --------------------------------~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~ 640 (997)
T KOG0334|consen 593 --------------------------------CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNC 640 (997)
T ss_pred --------------------------------ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcch
Confidence 011234666777777777778999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 540 ~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
..+||+.++.+|..++++|++|.+.+||||+++++|+|++++.+|||||+|...++|+||.|||||.|++|.|++|+++.
T Consensus 641 ~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 641 DSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred hhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CC
Q 005742 620 SM 621 (679)
Q Consensus 620 ~~ 621 (679)
+.
T Consensus 721 q~ 722 (997)
T KOG0334|consen 721 QL 722 (997)
T ss_pred Hh
Confidence 43
No 39
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.9e-46 Score=376.60 Aligned_cols=448 Identities=18% Similarity=0.194 Sum_probs=275.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhc-CC--c-eEE
Q 005742 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKH-GV--T-ACF 242 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~-~~--~-~~~ 242 (679)
.-++|.||......++. +|+++++|||.|||+++++.+.. .++++||++||+.|+.|+++.|.+. ++ . .+.
T Consensus 13 ~ie~R~YQ~~i~a~al~-~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALF-KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhh-cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 34789999999998884 49999999999999998887763 3559999999999999999999985 55 2 344
Q ss_pred EcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccc
Q 005742 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322 (679)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~ 322 (679)
+.|.. ... ++...+...+|+|+||+.+.+.+. .+.+++.++.++|||||||..+ ...|-.+....-..
T Consensus 92 ltGev-~p~-~R~~~w~~~kVfvaTPQvveNDl~--~Grid~~dv~~lifDEAHRAvG-----nyAYv~Va~~y~~~--- 159 (542)
T COG1111 92 LTGEV-RPE-EREELWAKKKVFVATPQVVENDLK--AGRIDLDDVSLLIFDEAHRAVG-----NYAYVFVAKEYLRS--- 159 (542)
T ss_pred ecCCC-ChH-HHHHHHhhCCEEEeccHHHHhHHh--cCccChHHceEEEechhhhccC-----cchHHHHHHHHHHh---
Confidence 44443 333 233334456999999999998776 7888999999999999999985 33444443321111
Q ss_pred cccccCCCCCEEEEEccCChh--hHHHHHHHcCCCCCceEEecccCCCCcEEEEEe-cCCccchhhhHhHHHHHHHH---
Q 005742 323 NLKSLKFDIPLMALTATATIQ--VREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH-SKTSSRASYKKDFCQLIDIY--- 396 (679)
Q Consensus 323 ~~~~~~~~~~~l~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~--- 396 (679)
..++.+++|||||... ...++.+.|++.. +....-..+.+.--+.. .........+..+.++.+.+
T Consensus 160 -----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~---vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~ 231 (542)
T COG1111 160 -----AKNPLILGLTASPGSDLEKIQEVVENLGIEK---VEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDA 231 (542)
T ss_pred -----ccCceEEEEecCCCCCHHHHHHHHHhCCcce---EEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHH
Confidence 1266799999999764 4556777887642 22222222222111100 00111111222222222211
Q ss_pred hhhcccccccccccccc--CCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccccc
Q 005742 397 TKKKKTGEKEKSAIPQD--LDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGE 474 (679)
Q Consensus 397 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (679)
...+....+..-++... +....... ........+.......|...........-....++++...++.+.....+
T Consensus 232 l~~~Lk~L~~~g~~~~~~~~~~kdl~~---~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~ 308 (542)
T COG1111 232 LKPRLKPLKELGVIESSSPVSKKDLLE---LRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEK 308 (542)
T ss_pred HHHHHHHHHHcCceeccCcccHhHHHH---HHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 11111111111110000 00000000 00000000011111111111111222233344555555555554443333
Q ss_pred ccCCCCC--C---------CCCCc------cchhhccccCchHHHhhhccCCC---CCCcEEEEeCchhHHHHHHHHHHh
Q 005742 475 FYGHSPH--R---------DRDTD------RSFERTDLLNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCG 534 (679)
Q Consensus 475 ~~~~~~~--~---------~~~~~------~~~~~~~~~~~~~~ll~~l~~~~---~~~~~IVF~~t~~~~~~l~~~L~~ 534 (679)
+...... . ..... .........+|+..+.+.+.+.+ ...|+|||++.|++++.+.++|.+
T Consensus 309 l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~ 388 (542)
T COG1111 309 LEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKK 388 (542)
T ss_pred HHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHh
Confidence 3322111 0 00000 00111223567777777777765 345999999999999999999999
Q ss_pred CCCcEE-Eec--------CCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhcccc
Q 005742 535 FGVKAA-AYN--------ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605 (679)
Q Consensus 535 ~~~~~~-~~h--------g~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR 605 (679)
.+..+. .+- .||+|+++.+++++|+.|+++|||||+++++|+|||+||+||+|++..|...++||.|||||
T Consensus 389 ~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR 468 (542)
T COG1111 389 IGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR 468 (542)
T ss_pred cCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc
Confidence 888774 333 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCC--CCCccCCCCCCHHHHHHHHHHHHH
Q 005742 606 DGHLADCVLYANLS--SMPTLLPSRRSEDQTKQAYRMLSD 643 (679)
Q Consensus 606 ~G~~g~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 643 (679)
. +.|.+++|+... |..++..+.+....+......++.
T Consensus 469 ~-r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~~~~ 507 (542)
T COG1111 469 K-RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRGLSL 507 (542)
T ss_pred C-CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 899999999877 444454444444444444444443
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-45 Score=367.52 Aligned_cols=347 Identities=20% Similarity=0.257 Sum_probs=239.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHc---------CCCEEEEeecCCcchhhhhhhhhc-------cCCeEEEEcCchH
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLA---------HHDCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLIS 224 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~---------g~d~iv~a~TGsGKTl~~~lp~l~-------~~~~vLvl~Pt~~ 224 (679)
+..+|. .++++.+.|+|..++|+++. .+|++|.||||||||++|.+|+++ +.-++|||+||++
T Consensus 148 ~~q~l~-k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 148 IDQLLV-KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHHH-HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHH
Confidence 444455 46899999999999999963 589999999999999999999985 3569999999999
Q ss_pred HHHHHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCc----cEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccc
Q 005742 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMY----SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (679)
Q Consensus 225 L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH 296 (679)
|+.|+++.|.++ |+.++.+.+-..-.....++....+ +|+|+||++|.+++.. ...+.+.+++++||||||
T Consensus 227 L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-~k~f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-TKSFDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-CCCcchhhceEEEechHH
Confidence 999999999997 5565555544444444444444444 8999999999998875 456678999999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHhh-------------c---c----c---cccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005742 297 CVSKWGHDFRPDYRRLSVLRENF-------------G---A----N---NLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 297 ~l~~~g~~f~~~~~~l~~~~~~~-------------~---~----~---~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
||++.. |..-+-.+..+.... . + + .+-.+.+....|.+|||+++.-....--.++
T Consensus 306 Rll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 306 RLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 997522 222222221111110 0 0 0 0011122334677777776543332111222
Q ss_pred CCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCC
Q 005742 354 MSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRIS 433 (679)
Q Consensus 354 ~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (679)
.+. .+..... .-.+|. .+..+.+.
T Consensus 384 ~Pr--l~~v~~~--~~~rys-----------lp~~l~~~----------------------------------------- 407 (620)
T KOG0350|consen 384 IPR--LFHVSKP--LIGRYS-----------LPSSLSHR----------------------------------------- 407 (620)
T ss_pred CCc--eEEeecc--cceeee-----------cChhhhhc-----------------------------------------
Confidence 211 1111000 000000 00000000
Q ss_pred CCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCC
Q 005742 434 PNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDG 513 (679)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 513 (679)
.+ ......+...+...+. ...-.
T Consensus 408 -----------------------------------~v---------------------v~~~~~kpl~~~~lI~-~~k~~ 430 (620)
T KOG0350|consen 408 -----------------------------------LV---------------------VTEPKFKPLAVYALIT-SNKLN 430 (620)
T ss_pred -----------------------------------ee---------------------ecccccchHhHHHHHH-Hhhcc
Confidence 00 0001112222222222 22356
Q ss_pred cEEEEeCchhHHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC
Q 005742 514 LTIIYVPTRKETLSIAKYLC----GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589 (679)
Q Consensus 514 ~~IVF~~t~~~~~~l~~~L~----~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~ 589 (679)
++|+|+++...+.+++..|. .....+..+.|+++.+.|...++.|+.|+++||||||+++||||+.+|+.||+||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 99999999999999999887 35667888999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc
Q 005742 590 PQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL 624 (679)
Q Consensus 590 p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~ 624 (679)
|.+...|+||+||++|+|+.|.|+.+....+...+
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 99999999999999999999999999987765543
No 41
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=349.68 Aligned_cols=330 Identities=21% Similarity=0.281 Sum_probs=254.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~ 227 (679)
.+.+++.+.|- .++|..|+.+|..|+|.++.. +|+|.++..|+|||.+|.+.++. ..+.+++|+||++|+.
T Consensus 96 ~LkPellkgly-~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~ 174 (477)
T KOG0332|consen 96 RLKPELLKGLY-AMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAP 174 (477)
T ss_pred CCCHHHHhHHH-HhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHH
Confidence 45566666665 489999999999999999974 79999999999999999999985 4789999999999999
Q ss_pred HHHHHHHhcCC----ceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CC
Q 005742 228 DQCSKLSKHGV----TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WG 302 (679)
Q Consensus 228 q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g 302 (679)
|..+.+.+.|- .+.+..-+.... ....+ ..+|+|+||+.+.+++..+ +.+.+..++.+|+|||+.+.+ .|
T Consensus 175 Q~~eVv~eMGKf~~ita~yair~sk~~--rG~~i--~eqIviGTPGtv~Dlm~kl-k~id~~kikvfVlDEAD~Mi~tqG 249 (477)
T KOG0332|consen 175 QTGEVVEEMGKFTELTASYAIRGSKAK--RGNKL--TEQIVIGTPGTVLDLMLKL-KCIDLEKIKVFVLDEADVMIDTQG 249 (477)
T ss_pred HHHHHHHHhcCceeeeEEEEecCcccc--cCCcc--hhheeeCCCccHHHHHHHH-HhhChhhceEEEecchhhhhhccc
Confidence 99999888653 333333222110 00111 2589999999999988742 566788999999999999976 56
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
|...-.+| .+.++++.|++++|||....+.......+.-.....+-.....
T Consensus 250 --~~D~S~rI-----------~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~---------------- 300 (477)
T KOG0332|consen 250 --FQDQSIRI-----------MRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELA---------------- 300 (477)
T ss_pred --ccccchhh-----------hhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcc----------------
Confidence 77777777 3445668999999999988887766665542211111111111
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005742 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
-
T Consensus 301 -------------------------------------------------------------------------------L 301 (477)
T KOG0332|consen 301 -------------------------------------------------------------------------------L 301 (477)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005742 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
..+.++++.|. + ...|...+. .|...+.-++.||||.|++.+..|+..|...|..+..+
T Consensus 302 ~~IkQlyv~C~-------~-------------~~~K~~~l~-~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l 360 (477)
T KOG0332|consen 302 DNIKQLYVLCA-------C-------------RDDKYQALV-NLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLL 360 (477)
T ss_pred cchhhheeecc-------c-------------hhhHHHHHH-HHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEe
Confidence 11122222220 0 012222222 25555567899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC------CHHHHHHHhhccccCCCCceEEEEe
Q 005742 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------SLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~------s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
||+|.-.+|..+++.|+.|+.+|||+|++++||||++.|++|||||+|. +.+.|+||+||+||.|+.|.++-|+
T Consensus 361 ~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 361 HGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred eccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEee
Confidence 9999999999999999999999999999999999999999999999994 6899999999999999999999998
Q ss_pred cCCC
Q 005742 617 NLSS 620 (679)
Q Consensus 617 ~~~~ 620 (679)
+..+
T Consensus 441 ~~~~ 444 (477)
T KOG0332|consen 441 DDKD 444 (477)
T ss_pred cccC
Confidence 7544
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.3e-43 Score=405.28 Aligned_cols=336 Identities=20% Similarity=0.241 Sum_probs=236.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------------cCCeEEEEcCch
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLI 223 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------------~~~~vLvl~Pt~ 223 (679)
.+++.+.+.+++ +|..|+|+|.+|++.+++|+|++++||||||||++|++|++. .+.++|||+||+
T Consensus 17 ~l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 17 LLRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred hcCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 466777777765 577899999999999999999999999999999999999873 245799999999
Q ss_pred HHHHHHHHHHHh---------------c-CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCc
Q 005742 224 SLMHDQCSKLSK---------------H-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287 (679)
Q Consensus 224 ~L~~q~~~~l~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~ 287 (679)
+|+.|+.+.+.. . ++.+...+|+... ......+...++|+|+|||++..++....-...+.++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~-~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSS-YEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCH-HHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 999999876542 1 3445555555443 3344556667899999999998776532222357899
Q ss_pred eEEEeeccccccc--CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCC-----CceE
Q 005742 288 ALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSK-----GTKF 360 (679)
Q Consensus 288 ~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~-----~~~~ 360 (679)
++|||||||.+.+ +|..+...+.++..+. +...|+++||||+.+ ..++..++.... ....
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-----------~~~~q~IglSATl~~--~~~va~~L~~~~~~~~~r~~~ 240 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEELA-----------GGEFVRIGLSATIEP--LEEVAKFLVGYEDDGEPRDCE 240 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHhc-----------CCCCeEEEEecccCC--HHHHHHHhcCccccCCCCceE
Confidence 9999999999975 3433444455553332 236889999999954 456667665321 0111
Q ss_pred EecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCC
Q 005742 361 VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (679)
Q Consensus 361 ~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (679)
+........+.+.+.......
T Consensus 241 iv~~~~~k~~~i~v~~p~~~l----------------------------------------------------------- 261 (876)
T PRK13767 241 IVDARFVKPFDIKVISPVDDL----------------------------------------------------------- 261 (876)
T ss_pred EEccCCCccceEEEeccCccc-----------------------------------------------------------
Confidence 111111111111110000000
Q ss_pred CCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCc-hHHHhhhccCCCCCCcEEEEe
Q 005742 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNK-PAERLSMLQEPLEDGLTIIYV 519 (679)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~IVF~ 519 (679)
.. .. . ...... ...+.+.+.+ ..++||||
T Consensus 262 -------------------~~-------------------~~-------~--~~~~~~l~~~L~~~i~~---~~~~LVF~ 291 (876)
T PRK13767 262 -------------------IH-------------------TP-------A--EEISEALYETLHELIKE---HRTTLIFT 291 (876)
T ss_pred -------------------cc-------------------cc-------c--chhHHHHHHHHHHHHhc---CCCEEEEe
Confidence 00 00 0 000000 0111122221 46899999
Q ss_pred CchhHHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCH
Q 005742 520 PTRKETLSIAKYLCGF------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593 (679)
Q Consensus 520 ~t~~~~~~l~~~L~~~------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~ 593 (679)
+|++.++.++..|... +..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+|+.|.++
T Consensus 292 nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv 371 (876)
T PRK13767 292 NTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSV 371 (876)
T ss_pred CCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCH
Confidence 9999999999999873 4679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccC-CCCceEEEEe
Q 005742 594 EAYYQEAGRAGRD-GHLADCVLYA 616 (679)
Q Consensus 594 ~~y~Qr~GRagR~-G~~g~~~~l~ 616 (679)
.+|+||+|||||. |..+..+++.
T Consensus 372 ~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 372 SRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999986 4444444444
No 43
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.5e-43 Score=361.40 Aligned_cols=338 Identities=18% Similarity=0.212 Sum_probs=264.8
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHHH
Q 005742 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 157 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~~ 230 (679)
+...+..-|++. +|..|+++|..|||.++.+.|+||++..|+|||++|.+.++. .....+||+|||+|+-|+.
T Consensus 32 l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~ 110 (980)
T KOG4284|consen 32 LWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIK 110 (980)
T ss_pred HHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHH
Confidence 334455666643 899999999999999999999999999999999999888774 4679999999999999999
Q ss_pred HHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005742 231 SKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 231 ~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
..+.+. |.++.++.||..-.....+ -..++|+|+||+++..|++ .+.++.+.++++|+||||.+.+-+. |
T Consensus 111 ~tv~~v~~sf~g~~csvfIGGT~~~~d~~r--lk~~rIvIGtPGRi~qL~e--l~~~n~s~vrlfVLDEADkL~~t~s-f 185 (980)
T KOG4284|consen 111 ETVRKVAPSFTGARCSVFIGGTAHKLDLIR--LKQTRIVIGTPGRIAQLVE--LGAMNMSHVRLFVLDEADKLMDTES-F 185 (980)
T ss_pred HHHHHhcccccCcceEEEecCchhhhhhhh--hhhceEEecCchHHHHHHH--hcCCCccceeEEEeccHHhhhchhh-H
Confidence 888875 5566666666655433222 2347899999999999988 7888899999999999999987443 8
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005742 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
...+..| +..+|...|++++|||.+.+..+.+.+.+.- +.++......+ ..+-++...... .++
T Consensus 186 q~~In~i-----------i~slP~~rQv~a~SATYp~nLdn~Lsk~mrd---p~lVr~n~~d~-~L~GikQyv~~~-~s~ 249 (980)
T KOG4284|consen 186 QDDINII-----------INSLPQIRQVAAFSATYPRNLDNLLSKFMRD---PALVRFNADDV-QLFGIKQYVVAK-CSP 249 (980)
T ss_pred HHHHHHH-----------HHhcchhheeeEEeccCchhHHHHHHHHhcc---cceeecccCCc-eeechhheeeec-cCC
Confidence 8888888 6677889999999999999988888777742 22222111111 111100000000 000
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005742 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
.
T Consensus 250 n------------------------------------------------------------------------------- 250 (980)
T KOG4284|consen 250 N------------------------------------------------------------------------------- 250 (980)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005742 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
..+.....+...+..+.+.++-.++||||+....|+-++.+|...|+.+.++.|.
T Consensus 251 -------------------------nsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISga 305 (980)
T KOG4284|consen 251 -------------------------NSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGA 305 (980)
T ss_pred -------------------------chHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccc
Confidence 0000001122233444555667799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
|++.+|..+++.++.-.++|||+||..+||||-++|++||+.|+|.+.++|.||+|||||.|..|.+++|+...+
T Consensus 306 M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 306 MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997544
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-42 Score=396.89 Aligned_cols=336 Identities=25% Similarity=0.291 Sum_probs=246.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~ 231 (679)
.+++.+.+.+++ .|+.+|+|+|.+|++. ++.|+|+++++|||+|||++|.+|++. .++++|||+|+++|+.|+++
T Consensus 7 ~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 7 PLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFE 85 (737)
T ss_pred CCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHH
Confidence 366778888875 5999999999999998 778999999999999999999999874 68899999999999999999
Q ss_pred HHHhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHH
Q 005742 232 KLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (679)
Q Consensus 232 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~ 308 (679)
.|+++ ++++..+.++...... ..+.++|+|+||+++..++. .....+.++++|||||+|.+.+.+ +.+.
T Consensus 86 ~~~~~~~~g~~v~~~tGd~~~~~~----~l~~~~IiV~Tpek~~~llr--~~~~~l~~v~lvViDE~H~l~d~~--rg~~ 157 (737)
T PRK02362 86 EFERFEELGVRVGISTGDYDSRDE----WLGDNDIIVATSEKVDSLLR--NGAPWLDDITCVVVDEVHLIDSAN--RGPT 157 (737)
T ss_pred HHHHhhcCCCEEEEEeCCcCcccc----ccCCCCEEEECHHHHHHHHh--cChhhhhhcCEEEEECccccCCCc--chHH
Confidence 99886 7777777665443221 22457999999999988877 333446789999999999997644 4555
Q ss_pred HHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchhhhH
Q 005742 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKK 387 (679)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~~ 387 (679)
+..+..... ...+..|+++||||++ +..++..|++... .....|| ++...+....... +.
T Consensus 158 le~il~rl~--------~~~~~~qii~lSATl~--n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~---~~- 218 (737)
T PRK02362 158 LEVTLAKLR--------RLNPDLQVVALSATIG--NADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIH---FD- 218 (737)
T ss_pred HHHHHHHHH--------hcCCCCcEEEEcccCC--CHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeec---cc-
Confidence 555432221 2234789999999995 4577888886421 1222232 2222111100000 00
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccc
Q 005742 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
.. .. .+.
T Consensus 219 -------------------------------------------------------~~-------~~-----~~~------ 225 (737)
T PRK02362 219 -------------------------------------------------------DS-------QR-----EVE------ 225 (737)
T ss_pred -------------------------------------------------------cc-------cc-----cCC------
Confidence 00 00 000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC------------
Q 005742 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF------------ 535 (679)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~------------ 535 (679)
..........+.+.+. ..+++||||++++.++.++..|...
T Consensus 226 ------------------------~~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~ 278 (737)
T PRK02362 226 ------------------------VPSKDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAE 278 (737)
T ss_pred ------------------------CccchHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 0000001111222222 3679999999999999999888643
Q ss_pred ------------------------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE----e
Q 005742 536 ------------------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----Y 587 (679)
Q Consensus 536 ------------------------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~ 587 (679)
..++.++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ |
T Consensus 279 ~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~y 358 (737)
T PRK02362 279 LAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRY 358 (737)
T ss_pred HHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceee
Confidence 136899999999999999999999999999999999999999999999997 7
Q ss_pred C-----CCCCHHHHHHHhhccccCCCC--ceEEEEecCC
Q 005742 588 G-----WPQSLEAYYQEAGRAGRDGHL--ADCVLYANLS 619 (679)
Q Consensus 588 d-----~p~s~~~y~Qr~GRagR~G~~--g~~~~l~~~~ 619 (679)
| .|.+..+|+||+|||||.|.. |.+++++...
T Consensus 359 d~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 359 DGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred cCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 6 588999999999999999975 9999999764
No 45
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-44 Score=348.86 Aligned_cols=331 Identities=20% Similarity=0.319 Sum_probs=265.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+.+..-+- .+||.+|+.+|+.||.++.+|.|+++.+++|+|||.+|.+++++ +...+|+++|+++|+.|.
T Consensus 32 ~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi 110 (397)
T KOG0327|consen 32 NLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQI 110 (397)
T ss_pred CCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHH
Confidence 34445444443 46999999999999999999999999999999999999999986 467899999999999999
Q ss_pred HHHHHhcC----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc
Q 005742 230 CSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 230 ~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f 305 (679)
.+....++ +++....+|..............++|+++||+++.++++ .+.+....+.++|+|||+.++..| |
T Consensus 111 ~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~--~~~l~~~~iKmfvlDEaDEmLs~g--f 186 (397)
T KOG0327|consen 111 QKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLN--RGSLSTDGIKMFVLDEADEMLSRG--F 186 (397)
T ss_pred HHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhc--cccccccceeEEeecchHhhhccc--h
Confidence 98877753 445545555555444445555668999999999999988 556677889999999999999988 9
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhh
Q 005742 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~ 385 (679)
+..+..| ++.++++.|++++|||.+..+..--. .+.+.++.+.++......
T Consensus 187 kdqI~~i-----------f~~lp~~vQv~l~SAT~p~~vl~vt~--------------~f~~~pv~i~vkk~~ltl---- 237 (397)
T KOG0327|consen 187 KDQIYDI-----------FQELPSDVQVVLLSATMPSDVLEVTK--------------KFMREPVRILVKKDELTL---- 237 (397)
T ss_pred HHHHHHH-----------HHHcCcchhheeecccCcHHHHHHHH--------------HhccCceEEEecchhhhh----
Confidence 9999998 66677899999999999988776333 344666666665432100
Q ss_pred hHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005742 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
+...++|...
T Consensus 238 -------------------------------------------------~gikq~~i~v--------------------- 247 (397)
T KOG0327|consen 238 -------------------------------------------------EGIKQFYINV--------------------- 247 (397)
T ss_pred -------------------------------------------------hheeeeeeec---------------------
Confidence 0000000000
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005742 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
....|...+.++.. .....+|||++++.++.+...|..+++.+..+||+
T Consensus 248 ----------------------------~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d 296 (397)
T KOG0327|consen 248 ----------------------------EKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGD 296 (397)
T ss_pred ----------------------------cccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecc
Confidence 00113333333333 36789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005742 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
|.+.+|..++..|+.|..+|||.|+.+++|||+.+++.||+|++|...++|+||+||+||.|++|.++.+++..+.
T Consensus 297 ~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 297 MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975543
No 46
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-43 Score=361.87 Aligned_cols=354 Identities=20% Similarity=0.253 Sum_probs=262.2
Q ss_pred cccCCCccccccCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc---------
Q 005742 142 SLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------- 212 (679)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~--------- 212 (679)
+.|+.++.++.........+...+. ..+|..|+|+|.+|+|.++.++|++.|+|||+|||++|.+|++.+
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~-~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~ 206 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQ-ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKH 206 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHh-hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccC
Confidence 4455566666666667777877777 459999999999999999999999999999999999999999842
Q ss_pred --CCeEEEEcCchHHHHHHHHHHHhcCCc------eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhh
Q 005742 213 --GKVVVVISPLISLMHDQCSKLSKHGVT------ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAES 284 (679)
Q Consensus 213 --~~~vLvl~Pt~~L~~q~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~ 284 (679)
|-+++|++||++|++|.++++.++.+. +..+.......+.........++|+|.||-++..++..-.-...+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 569999999999999999999998633 222222211112122223345899999999988777621112578
Q ss_pred cCceEEEeecccccccC-CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEec
Q 005742 285 RGIALFAIDEVHCVSKW-GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT 363 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~~-g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 363 (679)
..+.++|+||+|++.+. + |..++..|-..+.. ++..+-+||||.+..+.+-....... .
T Consensus 287 ~~V~~lV~dEaD~lfe~~~--f~~Qla~I~sac~s----------~~i~~a~FSat~~~~VEE~~~~i~~~--~------ 346 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEF--FVEQLADIYSACQS----------PDIRVALFSATISVYVEEWAELIKSD--L------ 346 (593)
T ss_pred heeeeEeechHHhhhChhh--HHHHHHHHHHHhcC----------cchhhhhhhccccHHHHHHHHHhhcc--c------
Confidence 89999999999999775 3 55555555333221 47788899999987776533222211 1
Q ss_pred ccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCC
Q 005742 364 SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDD 443 (679)
Q Consensus 364 ~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (679)
+.+.+.... ..
T Consensus 347 ------~~vivg~~~-sa-------------------------------------------------------------- 357 (593)
T KOG0344|consen 347 ------KRVIVGLRN-SA-------------------------------------------------------------- 357 (593)
T ss_pred ------eeEEEecch-hH--------------------------------------------------------------
Confidence 111111100 00
Q ss_pred ccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchh
Q 005742 444 EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRK 523 (679)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~ 523 (679)
++.+++-.+.| .....|...+.+.+...+ ..++|||+++.+
T Consensus 358 ------------------~~~V~QelvF~--------------------gse~~K~lA~rq~v~~g~-~PP~lIfVQs~e 398 (593)
T KOG0344|consen 358 ------------------NETVDQELVFC--------------------GSEKGKLLALRQLVASGF-KPPVLIFVQSKE 398 (593)
T ss_pred ------------------hhhhhhhheee--------------------ecchhHHHHHHHHHhccC-CCCeEEEEecHH
Confidence 00001111111 011123344444444443 568999999999
Q ss_pred HHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhc
Q 005742 524 ETLSIAKYL-CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602 (679)
Q Consensus 524 ~~~~l~~~L-~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 602 (679)
.+..|...| .-.++.+..+||+.++.+|+.++++|+.|++.||+||++++||||+.+|++||+||+|.+..+|+||+||
T Consensus 399 Rak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGR 478 (593)
T KOG0344|consen 399 RAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGR 478 (593)
T ss_pred HHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhc
Confidence 999999999 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEecCCCCCcc
Q 005742 603 AGRDGHLADCVLYANLSSMPTL 624 (679)
Q Consensus 603 agR~G~~g~~~~l~~~~~~~~~ 624 (679)
+||+|+.|.+++||+..+.+.+
T Consensus 479 tgRag~~g~Aitfytd~d~~~i 500 (593)
T KOG0344|consen 479 TGRAGRSGKAITFYTDQDMPRI 500 (593)
T ss_pred cCCCCCCcceEEEeccccchhh
Confidence 9999999999999999887754
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=373.71 Aligned_cols=335 Identities=24% Similarity=0.309 Sum_probs=259.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----c-------CCeEEEEcCchH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----T-------GKVVVVISPLIS 224 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~-------~~~vLvl~Pt~~ 224 (679)
.+++.+++.++++ |.+|||.|.+||+.+.+|+|++++||||||||+++.+|++. . +-.+|+|+|.++
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 5677788888865 88999999999999999999999999999999999999973 1 358999999999
Q ss_pred HHHHHHHHHHh----cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc-
Q 005742 225 LMHDQCSKLSK----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS- 299 (679)
Q Consensus 225 L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~- 299 (679)
|..++.+.|.. .|+.+.+.+|+.+.. ..++.....+||+|+|||++.-++....-.-.+.++++|||||.|.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~-er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQS-EKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChH-HhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 99999988876 478886666555544 455667778999999999998877654444567899999999999995
Q ss_pred -cCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCC-CceEEecccCCCCcEEEEEec
Q 005742 300 -KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSK-GTKFVLTSFFRPNLRFSVKHS 377 (679)
Q Consensus 300 -~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~~r~~~~~~v~~~ 377 (679)
++|+...-.+.++..+ ..+.|+++||||.. ...++.++|.-.. +..++.... ..+..+.+...
T Consensus 164 sKRG~~Lsl~LeRL~~l------------~~~~qRIGLSATV~--~~~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p 228 (814)
T COG1201 164 SKRGVQLALSLERLREL------------AGDFQRIGLSATVG--PPEEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISP 228 (814)
T ss_pred cccchhhhhhHHHHHhh------------CcccEEEeehhccC--CHHHHHHHhcCCCCceEEEEccc-CCcceEEEEec
Confidence 4886666666666433 12689999999995 6678888887654 333333322 23333333221
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005742 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
....... ...
T Consensus 229 ~~~~~~~-~~~--------------------------------------------------------------------- 238 (814)
T COG1201 229 VEDLIYD-EEL--------------------------------------------------------------------- 238 (814)
T ss_pred CCccccc-cch---------------------------------------------------------------------
Confidence 1110000 000
Q ss_pred hhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC-
Q 005742 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG- 536 (679)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~- 536 (679)
.......+.+.+++ ...+|||+|||..++.++..|.+.+
T Consensus 239 -------------------------------------~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~ 278 (814)
T COG1201 239 -------------------------------------WAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGP 278 (814)
T ss_pred -------------------------------------hHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcC
Confidence 00011122222222 3489999999999999999999987
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccc-cCCCCceEEEE
Q 005742 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG-RDGHLADCVLY 615 (679)
Q Consensus 537 ~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRag-R~G~~g~~~~l 615 (679)
..+..+||.++.++|..+.++|++|+++++|||+.++.|||+.++++||+|+.|.++..++||+||+| |.|.....+++
T Consensus 279 ~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii 358 (814)
T COG1201 279 DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIII 358 (814)
T ss_pred CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999 56777888877
Q ss_pred ecC
Q 005742 616 ANL 618 (679)
Q Consensus 616 ~~~ 618 (679)
...
T Consensus 359 ~~~ 361 (814)
T COG1201 359 AED 361 (814)
T ss_pred ecC
Confidence 654
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.8e-41 Score=381.35 Aligned_cols=315 Identities=21% Similarity=0.208 Sum_probs=231.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHH
Q 005742 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g------~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~ 229 (679)
......+.+.|+| +||++|.+||+.++++ +|.++++|||+|||.+|++|++ ..+++++||+||++|+.|+
T Consensus 438 ~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 438 LEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHH
Confidence 3445556667899 5999999999999874 7999999999999999998876 4689999999999999999
Q ss_pred HHHHHhc----CCceEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 230 CSKLSKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
++.++++ ++++..++++..... .......+.++|+|+||..+ .+...+.++++|||||+|++ |
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-------~~~v~f~~L~llVIDEahrf---g 586 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-------QKDVKFKDLGLLIIDEEQRF---G 586 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-------hCCCCcccCCEEEeeccccc---c
Confidence 9998873 566666665554322 12223345789999999533 23345788999999999996 3
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
...+.. + +.++.++++++|||||.+...... ..++.....+...+..+.++...+.....
T Consensus 587 v~~~~~---L------------~~~~~~~~vL~~SATpiprtl~~~--l~g~~d~s~I~~~p~~R~~V~t~v~~~~~--- 646 (926)
T TIGR00580 587 VKQKEK---L------------KELRTSVDVLTLSATPIPRTLHMS--MSGIRDLSIIATPPEDRLPVRTFVMEYDP--- 646 (926)
T ss_pred hhHHHH---H------------HhcCCCCCEEEEecCCCHHHHHHH--HhcCCCcEEEecCCCCccceEEEEEecCH---
Confidence 112221 1 122347899999999987655432 22332222222222222222221111000
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005742 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
..+
T Consensus 647 ----~~i------------------------------------------------------------------------- 649 (926)
T TIGR00580 647 ----ELV------------------------------------------------------------------------- 649 (926)
T ss_pred ----HHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--CCcEE
Q 005742 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAA 540 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~ 540 (679)
...+...+ ...++++|||+++++++.+++.|.+. ++++.
T Consensus 650 ------------------------------------~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~ 690 (926)
T TIGR00580 650 ------------------------------------REAIRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIA 690 (926)
T ss_pred ------------------------------------HHHHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEE
Confidence 00011111 12679999999999999999999984 78999
Q ss_pred EecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC-CHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 541 ~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
.+||+|++++|+.++++|++|+++|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|+++++..
T Consensus 691 ~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 691 IAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999999999999999999999999999999999999999975 6889999999999999999999999754
Q ss_pred C
Q 005742 620 S 620 (679)
Q Consensus 620 ~ 620 (679)
+
T Consensus 771 ~ 771 (926)
T TIGR00580 771 K 771 (926)
T ss_pred c
Confidence 4
No 49
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-43 Score=344.69 Aligned_cols=337 Identities=22% Similarity=0.307 Sum_probs=274.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-------cCCeEEEEcCchHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLISLMHD 228 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-------~~~~vLvl~Pt~~L~~q 228 (679)
.+...+..++.+. ||+.|+|+|+..+|.+|+++|++..+-||||||.||++|+++ .+-++++++||++|+.|
T Consensus 27 gL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 27 GLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred CCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 4556666777644 999999999999999999999999999999999999999985 35799999999999999
Q ss_pred HHHHHHhcC----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 229 QCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 229 ~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
..+.++.++ .+...+.+|.... .+...+..+++||++||+++..+.- .-.+.++.+.|||+||++++.++|
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~e-eqf~~l~~npDii~ATpgr~~h~~v--em~l~l~sveyVVfdEadrlfemg-- 180 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIE-EQFILLNENPDIIIATPGRLLHLGV--EMTLTLSSVEYVVFDEADRLFEMG-- 180 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHH-HHHHHhccCCCEEEecCceeeeeeh--heeccccceeeeeehhhhHHHhhh--
Confidence 999988873 4555555555544 3556677789999999999987655 334678899999999999999999
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
|.+.+..+ +..++.+.|+++||||++........+-+ .+|..+.+... +.
T Consensus 181 fqeql~e~-----------l~rl~~~~QTllfSatlp~~lv~fakaGl--------------~~p~lVRldve-tk---- 230 (529)
T KOG0337|consen 181 FQEQLHEI-----------LSRLPESRQTLLFSATLPRDLVDFAKAGL--------------VPPVLVRLDVE-TK---- 230 (529)
T ss_pred hHHHHHHH-----------HHhCCCcceEEEEeccCchhhHHHHHccC--------------CCCceEEeehh-hh----
Confidence 99999888 66677789999999999877665443333 22222211100 00
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
+.+...
T Consensus 231 ----ise~lk---------------------------------------------------------------------- 236 (529)
T KOG0337|consen 231 ----ISELLK---------------------------------------------------------------------- 236 (529)
T ss_pred ----cchhhh----------------------------------------------------------------------
Confidence 000000
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecC
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg 544 (679)
..........|...|+.++.+.....+++|||.|..+++.+...|...|+.+..++|
T Consensus 237 -----------------------~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iys 293 (529)
T KOG0337|consen 237 -----------------------VRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYS 293 (529)
T ss_pred -----------------------hheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcccccc
Confidence 001112233566777888888777779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc
Q 005742 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL 624 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~ 624 (679)
.|++.-|..-+.+|+.++..+||.|++++||+|+|-.+.||+||+|.+..-|+||+||+.|+|+.|.+|.++.+.+.+++
T Consensus 294 slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl 373 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYL 373 (529)
T ss_pred ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred C
Q 005742 625 L 625 (679)
Q Consensus 625 ~ 625 (679)
+
T Consensus 374 ~ 374 (529)
T KOG0337|consen 374 L 374 (529)
T ss_pred h
Confidence 4
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.1e-41 Score=382.58 Aligned_cols=331 Identities=21% Similarity=0.285 Sum_probs=240.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~ 230 (679)
.+++.+.+.|++ .||.+|+|+|.++++. ++.|+|+++++|||||||++|.+|++. .++++|||+|+++|+.|++
T Consensus 7 ~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~ 85 (720)
T PRK00254 7 RVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKY 85 (720)
T ss_pred CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 466778888885 6999999999999986 788999999999999999999999863 5789999999999999999
Q ss_pred HHHHhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchH
Q 005742 231 SKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (679)
Q Consensus 231 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~ 307 (679)
+.|..+ ++++..+.++...... +.+.++|+|+||+++..++. .+...++++++||+||+|.+.+++ +..
T Consensus 86 ~~~~~~~~~g~~v~~~~Gd~~~~~~----~~~~~~IiV~Tpe~~~~ll~--~~~~~l~~l~lvViDE~H~l~~~~--rg~ 157 (720)
T PRK00254 86 REFKDWEKLGLRVAMTTGDYDSTDE----WLGKYDIIIATAEKFDSLLR--HGSSWIKDVKLVVADEIHLIGSYD--RGA 157 (720)
T ss_pred HHHHHHhhcCCEEEEEeCCCCCchh----hhccCCEEEEcHHHHHHHHh--CCchhhhcCCEEEEcCcCccCCcc--chH
Confidence 888764 6777777766544321 23458999999999988776 333457889999999999998755 445
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchhhh
Q 005742 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYK 386 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~ 386 (679)
.+..+. ..+....|+++||||++. ..++..|++... + ....+| ++...+.......
T Consensus 158 ~le~il-----------~~l~~~~qiI~lSATl~n--~~~la~wl~~~~----~-~~~~rpv~l~~~~~~~~~~~----- 214 (720)
T PRK00254 158 TLEMIL-----------THMLGRAQILGLSATVGN--AEELAEWLNAEL----V-VSDWRPVKLRKGVFYQGFLF----- 214 (720)
T ss_pred HHHHHH-----------HhcCcCCcEEEEEccCCC--HHHHHHHhCCcc----c-cCCCCCCcceeeEecCCeee-----
Confidence 555442 222347899999999953 578888886431 1 111222 1111111000000
Q ss_pred HhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcc
Q 005742 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (679)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (679)
..+....
T Consensus 215 -------------------------------------------------------------------------~~~~~~~ 221 (720)
T PRK00254 215 -------------------------------------------------------------------------WEDGKIE 221 (720)
T ss_pred -------------------------------------------------------------------------ccCcchh
Confidence 0000000
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh------------
Q 005742 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------ 534 (679)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~------------ 534 (679)
. ........+.+.+. ...++||||+|++.++.++..|..
T Consensus 222 ~--------------------------~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~ 272 (720)
T PRK00254 222 R--------------------------FPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELR 272 (720)
T ss_pred c--------------------------chHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHH
Confidence 0 00000011112222 256899999999999988876642
Q ss_pred ---------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE-------
Q 005742 535 ---------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH------- 586 (679)
Q Consensus 535 ---------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~------- 586 (679)
...++.++||+|++++|+.+++.|++|.++|||||+++++|||+|.+++||.
T Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~ 352 (720)
T PRK00254 273 ALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN 352 (720)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC
Confidence 1236899999999999999999999999999999999999999999999994
Q ss_pred eCCCC-CHHHHHHHhhccccCC--CCceEEEEecCCC
Q 005742 587 YGWPQ-SLEAYYQEAGRAGRDG--HLADCVLYANLSS 620 (679)
Q Consensus 587 ~d~p~-s~~~y~Qr~GRagR~G--~~g~~~~l~~~~~ 620 (679)
++.|. +..+|+||+|||||.| ..|.++++++..+
T Consensus 353 ~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 353 FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 55543 5779999999999975 5699999987654
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.1e-40 Score=382.10 Aligned_cols=312 Identities=22% Similarity=0.249 Sum_probs=226.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHH
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g------~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~ 231 (679)
....+...|+| +||++|.+||+.++.+ +|++++++||+|||.+|+.+++ ..+++++||+||++|+.|+++
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH
Confidence 33444557788 7999999999999986 8999999999999998887765 468999999999999999999
Q ss_pred HHHhc----CCceEEEcCCCCcHHHHH---HHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 232 KLSKH----GVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 232 ~l~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
.|.+. ++.+..+.++.+...... ....+.++|+|+||+.+. ..+.+.++++|||||+|++ |
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-------~~v~~~~L~lLVIDEahrf---G-- 735 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-------SDVKWKDLGLLIVDEEHRF---G-- 735 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-------CCCCHhhCCEEEEechhhc---c--
Confidence 98863 456666665554433221 222357899999997442 2234678999999999997 3
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
+.. ...+ +.++.++|+++|||||.+.........+ .....+...+..+.++...+....
T Consensus 736 ~~~-~e~l------------k~l~~~~qvLl~SATpiprtl~l~~~gl--~d~~~I~~~p~~r~~v~~~~~~~~------ 794 (1147)
T PRK10689 736 VRH-KERI------------KAMRADVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREYD------ 794 (1147)
T ss_pred hhH-HHHH------------HhcCCCCcEEEEcCCCCHHHHHHHHhhC--CCcEEEecCCCCCCCceEEEEecC------
Confidence 221 1222 2234488999999999887765443322 222111111111111111110000
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1147)
T PRK10689 795 -------------------------------------------------------------------------------- 794 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--CCcEEEe
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAY 542 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~~ 542 (679)
........+.+....++++|||++++.++.+++.|.+. +.++..+
T Consensus 795 ---------------------------------~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~l 841 (1147)
T PRK10689 795 ---------------------------------SLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 (1147)
T ss_pred ---------------------------------cHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 00000011112223679999999999999999999987 7899999
Q ss_pred cCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC-CCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
||+|++++|++++.+|++|+++|||||+++++|||+|++++||..+.+ .++..|+||+||+||.|+.|.|++++...
T Consensus 842 HG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999999999999999999999999999999999999965543 35678999999999999999999998643
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.2e-39 Score=362.90 Aligned_cols=308 Identities=19% Similarity=0.214 Sum_probs=223.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHH
Q 005742 163 SLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 163 ~~l~~~~g~~~~~~~Q~~ai~~~l~g------~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l 233 (679)
..+...++| +||++|++|++.+.++ ++.++++|||||||++|++|++. .+.+++|++||++|+.|+++.+
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l 330 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENL 330 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHH
Confidence 334456678 6999999999999876 48999999999999999999864 6889999999999999999998
Q ss_pred Hhc----CCceEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCch
Q 005742 234 SKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306 (679)
Q Consensus 234 ~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~ 306 (679)
+++ ++++..++++..... .......+.++|+|+||+.+.. ...+.++++|||||+|++.. ..+
T Consensus 331 ~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~---~qr 400 (681)
T PRK10917 331 KKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGV---EQR 400 (681)
T ss_pred HHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhH---HHH
Confidence 875 578888887776432 2223345579999999987643 23467899999999998731 122
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhh
Q 005742 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386 (679)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~ 386 (679)
.. + .. ....+++++|||||.+...... ..+......+...+..+.++...+...
T Consensus 401 ~~---l---~~---------~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~--------- 454 (681)
T PRK10917 401 LA---L---RE---------KGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPD--------- 454 (681)
T ss_pred HH---H---Hh---------cCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCc---------
Confidence 21 1 11 1225789999999976544321 222111111111111122222111110
Q ss_pred HhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcc
Q 005742 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (679)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (679)
T Consensus 455 -------------------------------------------------------------------------------- 454 (681)
T PRK10917 455 -------------------------------------------------------------------------------- 454 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchh--------HHHHHHHHHHhC--
Q 005742 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRK--------ETLSIAKYLCGF-- 535 (679)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~--------~~~~l~~~L~~~-- 535 (679)
.....+++.+.+.. ...+++|||+.++ .+..+++.|...
T Consensus 455 ------------------------------~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~ 504 (681)
T PRK10917 455 ------------------------------SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP 504 (681)
T ss_pred ------------------------------ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC
Confidence 01111112222111 2568999999653 456778888765
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC-CHHHHHHHhhccccCCCCceEEE
Q 005742 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLADCVL 614 (679)
Q Consensus 536 ~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~g~~~~ 614 (679)
++.+..+||+|++++|+.++++|++|+.+|||||+++++|||+|++++||+++.|. ....|.|++||+||.|..|.|++
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEE
Confidence 57899999999999999999999999999999999999999999999999999997 57889999999999999999999
Q ss_pred Eec
Q 005742 615 YAN 617 (679)
Q Consensus 615 l~~ 617 (679)
+++
T Consensus 585 l~~ 587 (681)
T PRK10917 585 LYK 587 (681)
T ss_pred EEC
Confidence 995
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.6e-39 Score=365.11 Aligned_cols=331 Identities=20% Similarity=0.215 Sum_probs=235.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~ 232 (679)
.+++.+.+.+.+ .+|. |+++|.++++.+..++|+++++|||||||+++.++++. .++++||++|+++|+.|+++.
T Consensus 7 ~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~ 84 (674)
T PRK01172 7 GYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEE 84 (674)
T ss_pred CCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHH
Confidence 366777777764 4774 99999999999999999999999999999999988764 588999999999999999999
Q ss_pred HHhc---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHH
Q 005742 233 LSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDY 309 (679)
Q Consensus 233 l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~ 309 (679)
|.++ +..+....++...... ....++|+|+||+++..++. .....+.++++||+||||++.+.+ +.+.+
T Consensus 85 ~~~l~~~g~~v~~~~G~~~~~~~----~~~~~dIiv~Tpek~~~l~~--~~~~~l~~v~lvViDEaH~l~d~~--rg~~l 156 (674)
T PRK01172 85 LSRLRSLGMRVKISIGDYDDPPD----FIKRYDVVILTSEKADSLIH--HDPYIINDVGLIVADEIHIIGDED--RGPTL 156 (674)
T ss_pred HHHHhhcCCeEEEEeCCCCCChh----hhccCCEEEECHHHHHHHHh--CChhHHhhcCEEEEecchhccCCC--ccHHH
Confidence 8764 6666666555433221 12357999999999988776 333457889999999999997644 44555
Q ss_pred HHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhH
Q 005742 310 RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389 (679)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~ 389 (679)
..+..... ..+++.|+++||||++ +..++..|++... +...+...++...+........ .
T Consensus 157 e~ll~~~~--------~~~~~~riI~lSATl~--n~~~la~wl~~~~----~~~~~r~vpl~~~i~~~~~~~~----~-- 216 (674)
T PRK01172 157 ETVLSSAR--------YVNPDARILALSATVS--NANELAQWLNASL----IKSNFRPVPLKLGILYRKRLIL----D-- 216 (674)
T ss_pred HHHHHHHH--------hcCcCCcEEEEeCccC--CHHHHHHHhCCCc----cCCCCCCCCeEEEEEecCeeee----c--
Confidence 55433222 2234789999999995 4567888886421 2222222223222211000000 0
Q ss_pred HHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccc
Q 005742 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (679)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (679)
.. .+
T Consensus 217 ----------------------------------------------------------~~--~~---------------- 220 (674)
T PRK01172 217 ----------------------------------------------------------GY--ER---------------- 220 (674)
T ss_pred ----------------------------------------------------------cc--cc----------------
Confidence 00 00
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--------------
Q 005742 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-------------- 535 (679)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------- 535 (679)
.......++... ....+++||||++++.++.++..|.+.
T Consensus 221 -------------------------~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~ 273 (674)
T PRK01172 221 -------------------------SQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENN 273 (674)
T ss_pred -------------------------ccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccccccccc
Confidence 000000111111 112579999999999999999988653
Q ss_pred -----------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC---------CCCHHH
Q 005742 536 -----------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW---------PQSLEA 595 (679)
Q Consensus 536 -----------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~---------p~s~~~ 595 (679)
..++..+||+|++++|+.+++.|++|.++|||||+++++|||+|+..+|| +|. |.+..+
T Consensus 274 ~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~ 352 (674)
T PRK01172 274 NVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNME 352 (674)
T ss_pred ccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHH
Confidence 13578999999999999999999999999999999999999999865544 443 568899
Q ss_pred HHHHhhccccCCC--CceEEEEecCCC
Q 005742 596 YYQEAGRAGRDGH--LADCVLYANLSS 620 (679)
Q Consensus 596 y~Qr~GRagR~G~--~g~~~~l~~~~~ 620 (679)
|.||+|||||.|. .|.+++++...+
T Consensus 353 ~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 353 IKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999985 577888875443
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.9e-38 Score=355.41 Aligned_cols=314 Identities=18% Similarity=0.219 Sum_probs=223.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHH
Q 005742 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 160 ~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g------~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~ 230 (679)
.....+.+.++| +||++|++|++.++.+ .+.++++|||||||++|++|++. .+.+++|++||++|+.|++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHH
Confidence 333334446788 7999999999999875 36899999999999999988864 6889999999999999999
Q ss_pred HHHHhc----CCceEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCC
Q 005742 231 SKLSKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (679)
Q Consensus 231 ~~l~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~ 303 (679)
+.++++ ++++..++++..... .......+.++|+|+||+.+.. ...+.++++|||||+|++..
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~--- 371 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGV--- 371 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccH---
Confidence 998874 688888887766543 2233345678999999987643 23467899999999998632
Q ss_pred CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccch
Q 005742 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 304 ~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~ 383 (679)
..+..+.. ... . ...+++++|||||.+..... ...+......+...+..+.++...+...
T Consensus 372 ~qr~~l~~------~~~-----~-~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~------ 431 (630)
T TIGR00643 372 EQRKKLRE------KGQ-----G-GFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKH------ 431 (630)
T ss_pred HHHHHHHH------hcc-----c-CCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCc------
Confidence 12222211 110 0 02578999999997654331 1111100000000011111111111100
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005742 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
T Consensus 432 -------------------------------------------------------------------------------- 431 (630)
T TIGR00643 432 -------------------------------------------------------------------------------- 431 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCch--------hHHHHHHHHHHh
Q 005742 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTR--------KETLSIAKYLCG 534 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~--------~~~~~l~~~L~~ 534 (679)
.....++..+.+.+ ...+++|||+.. ..++.+++.|.+
T Consensus 432 ---------------------------------~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~ 478 (630)
T TIGR00643 432 ---------------------------------DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKK 478 (630)
T ss_pred ---------------------------------chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHh
Confidence 00011222222221 256899999876 456677777775
Q ss_pred --CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC-CHHHHHHHhhccccCCCCce
Q 005742 535 --FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLAD 611 (679)
Q Consensus 535 --~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~g~ 611 (679)
.++.+..+||+|++++|+.++++|++|+.+|||||+++++|||+|++++||+++.|. +...|.||+||+||.|+.|.
T Consensus 479 ~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 479 AFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 377899999999999999999999999999999999999999999999999999986 68899999999999999999
Q ss_pred EEEEec
Q 005742 612 CVLYAN 617 (679)
Q Consensus 612 ~~~l~~ 617 (679)
|++++.
T Consensus 559 ~il~~~ 564 (630)
T TIGR00643 559 CLLVYK 564 (630)
T ss_pred EEEEEC
Confidence 999984
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7.2e-39 Score=373.59 Aligned_cols=313 Identities=23% Similarity=0.291 Sum_probs=216.6
Q ss_pred EEeecCCcchhhhhhhhhc----------------cCCeEEEEcCchHHHHHHHHHHHh----------------cCCce
Q 005742 193 VLAATGSGKSLCFQIPALL----------------TGKVVVVISPLISLMHDQCSKLSK----------------HGVTA 240 (679)
Q Consensus 193 v~a~TGsGKTl~~~lp~l~----------------~~~~vLvl~Pt~~L~~q~~~~l~~----------------~~~~~ 240 (679)
|++|||||||++|.+|++. .+.++|||+|+++|+.|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999862 146899999999999999998863 24555
Q ss_pred EEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCCCchHHHHHHHHHHHh
Q 005742 241 CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~~ 318 (679)
...+|+.+. ..+.+.+...++|+|+|||++..++.. +....++++++|||||+|.+.+ +|..+...+.+|..+.
T Consensus 81 ~vrtGDt~~-~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~-- 156 (1490)
T PRK09751 81 GIRTGDTPA-QERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL-- 156 (1490)
T ss_pred EEEECCCCH-HHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--
Confidence 555555544 434455667789999999999887763 2234688999999999999975 6777788888885542
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchhhhHhHHHHHHHHh
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 397 (679)
+.+.|+++||||..+ .+++.++|+...+..++.....++ ++.+.+.. . . +.++... .
T Consensus 157 ---------~~~~QrIgLSATI~n--~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~-~-d--------~~~~~~~-~ 214 (1490)
T PRK09751 157 ---------HTSAQRIGLSATVRS--ASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPV-A-N--------MDDVSSV-A 214 (1490)
T ss_pred ---------CCCCeEEEEEeeCCC--HHHHHHHhcCCCCEEEECCCCCcccceEEEEec-C-c--------hhhcccc-c
Confidence 236899999999964 467888887543333433222222 22221110 0 0 0000000 0
Q ss_pred hhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccC
Q 005742 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYG 477 (679)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (679)
. .. . .... .. ... ..|
T Consensus 215 ------~------------------------------~~---~--~~~~--~~-r~~-----------~i~--------- 230 (1490)
T PRK09751 215 ------S------------------------------GT---G--EDSH--AG-REG-----------SIW--------- 230 (1490)
T ss_pred ------c------------------------------cc---c--cccc--hh-hhh-----------hhh---------
Confidence 0 00 0 0000 00 000 000
Q ss_pred CCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC---------------------
Q 005742 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG--------------------- 536 (679)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~--------------------- 536 (679)
......++..+ ....++||||+|++.|+.++..|++..
T Consensus 231 ------------------~~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1490)
T PRK09751 231 ------------------PYIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTS 289 (1490)
T ss_pred ------------------HHHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhcc
Confidence 00001122222 235689999999999999999997641
Q ss_pred ------------CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccc
Q 005742 537 ------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604 (679)
Q Consensus 537 ------------~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRag 604 (679)
..+..|||+|++++|..+++.|++|++++||||+++++|||+++|++||+|+.|.++.+|+||+||||
T Consensus 290 ~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAG 369 (1490)
T PRK09751 290 GATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAG 369 (1490)
T ss_pred ccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCC
Confidence 12678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCceEEEEe
Q 005742 605 RD-GHLADCVLYA 616 (679)
Q Consensus 605 R~-G~~g~~~~l~ 616 (679)
|. |..+.++++.
T Consensus 370 R~~gg~s~gli~p 382 (1490)
T PRK09751 370 HQVGGVSKGLFFP 382 (1490)
T ss_pred CCCCCccEEEEEe
Confidence 96 3445556443
No 56
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8e-40 Score=350.41 Aligned_cols=422 Identities=19% Similarity=0.254 Sum_probs=239.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHhcCCc--eEEEc
Q 005742 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKHGVT--ACFLG 244 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~--~~~~~ 244 (679)
-.+|.||.+.+..+| |+|+||++|||+|||+++...++. +++++||++|++.|+.||...+..+++. +....
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l 139 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQL 139 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceeec
Confidence 379999999999999 999999999999999999888873 5799999999999999999888887643 44444
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHh-hcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE-SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~-~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
+|........ .+....+|+|+||+.+.+.|.. +... ++.+.++||||||+..+ ++.+...++.+.....
T Consensus 140 ~~~~~~~~r~-~i~~s~~vff~TpQil~ndL~~--~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~~k~------ 209 (746)
T KOG0354|consen 140 GDTVPRSNRG-EIVASKRVFFRTPQILENDLKS--GLHDELSDFSLIVFDECHRTSK-NHPYNNIMREYLDLKN------ 209 (746)
T ss_pred cCccCCCchh-hhhcccceEEeChHhhhhhccc--ccccccceEEEEEEcccccccc-cccHHHHHHHHHHhhh------
Confidence 4433322222 3445579999999999876663 2222 58899999999999985 2223333333321111
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHH---HcCCCCCceEE---eccc--CCCCcEEEEEecCCccchhhhHhHHHHHHH
Q 005742 324 LKSLKFDIPLMALTATATIQVREDILK---SLHMSKGTKFV---LTSF--FRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~---~l~~~~~~~~~---~~~~--~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 395 (679)
...|+|+|||||.... ..+.. .|...-+.... ...+ .+.-..+.+. -........+.+..++..
T Consensus 210 -----~~~qILgLTASpG~~~-~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~--~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 210 -----QGNQILGLTASPGSKL-EQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD--LSLCERDIEDPFGMIIEP 281 (746)
T ss_pred -----ccccEEEEecCCCccH-HHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc--HHHhhhhhhhhHHHHHHH
Confidence 1349999999998532 22222 12111111110 1111 0110111111 111112233344444444
Q ss_pred HhhhccccccccccccccCCCccCcCCCCcccccccCCC---CCCCC-C-------CCCccCCCCCC----Ccchhhhhh
Q 005742 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISP---NIGDG-Y-------YDDEDVGNSPM----GKEMSVEFL 460 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-------~~~~~~~~~~~----~~~~~~~~l 460 (679)
|........-....-... .+....+.......+ ..... + +.......... ......++.
T Consensus 282 ~l~~l~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~ 355 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKST------SYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFY 355 (746)
T ss_pred HHHHHHhcCccccccccc------cccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhc
Confidence 443322111000000000 000000000000000 00000 0 00000000000 000000111
Q ss_pred ccCCccccccccccccCC---CCCCCCCCccchhhccccCchHHHhhhccCCC---CCCcEEEEeCchhHHHHHHHHHHh
Q 005742 461 ENDSVDDWDVACGEFYGH---SPHRDRDTDRSFERTDLLNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCG 534 (679)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~~IVF~~t~~~~~~l~~~L~~ 534 (679)
+...+..+....-+.... .+.......-........+++..+.+.|.+.. +..|+||||.+|..+..|..+|.+
T Consensus 356 ~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~ 435 (746)
T KOG0354|consen 356 EEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQ 435 (746)
T ss_pred cccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHh
Confidence 111111100000000000 00000000000011123566777766665543 455999999999999999999984
Q ss_pred ---CCCcEEEecC--------CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhcc
Q 005742 535 ---FGVKAAAYNA--------SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603 (679)
Q Consensus 535 ---~~~~~~~~hg--------~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 603 (679)
.+++...+-| +|+++++.++++.|++|+++|||||+++++|+||+.|++||.||...|+...+||+||
T Consensus 436 ~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR- 514 (746)
T KOG0354|consen 436 LHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR- 514 (746)
T ss_pred hhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-
Confidence 3444444443 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEecCCC
Q 005742 604 GRDGHLADCVLYANLSS 620 (679)
Q Consensus 604 gR~G~~g~~~~l~~~~~ 620 (679)
||+ +.|.++++++...
T Consensus 515 gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 515 GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred ccc-cCCeEEEEEcchh
Confidence 998 6888998888443
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5e-38 Score=347.34 Aligned_cols=324 Identities=16% Similarity=0.106 Sum_probs=213.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEeecCCcchhhhhhhhh---c--cCC-eEEEEcCchHHHHHHHHHHHh
Q 005742 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPAL---L--TGK-VVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 163 ~~l~~~~g~~~~~~~Q~~ai~~~l~g~-d~iv~a~TGsGKTl~~~lp~l---~--~~~-~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
+.+++..||. |+|||.++++.++.|+ ++++.+|||||||.++.++.+ . ..+ +.++++|||+|+.|+++.+.+
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH
Confidence 3445556996 9999999999999998 577789999999995543333 1 223 555577999999999988876
Q ss_pred cC---------------------------CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHH-HHH-------HH--
Q 005742 236 HG---------------------------VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-LIK-------PL-- 278 (679)
Q Consensus 236 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~-------~~-- 278 (679)
++ +++..+.||..... +...+...++|||+|++.+.+ .+. ..
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~-q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND-EWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH-HHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 52 45666777766544 445566778999999765542 110 00
Q ss_pred HHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCc
Q 005742 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGT 358 (679)
Q Consensus 279 ~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~ 358 (679)
-..-.+.++.+||+|||| ++.| |...+.+|........ ...+.|+++||||++..+.......+.- +
T Consensus 164 i~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~------~~rprQtLLFSAT~p~ei~~l~~~~~~~--p- 230 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPP------DFLPLRVVELTATSRTDGPDRTTLLSAE--D- 230 (844)
T ss_pred chhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCc------ccccceEEEEecCCCccHHHHHHHHccC--C-
Confidence 001126789999999999 4566 8998888854321000 0013689999999987655432222211 1
Q ss_pred eEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCC
Q 005742 359 KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGD 438 (679)
Q Consensus 359 ~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (679)
....+........ +.
T Consensus 231 -----------~~i~V~~~~l~a~----------------------ki-------------------------------- 245 (844)
T TIGR02621 231 -----------YKHPVLKKRLAAK----------------------KI-------------------------------- 245 (844)
T ss_pred -----------ceeeccccccccc----------------------ce--------------------------------
Confidence 1111100000000 00
Q ss_pred CCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEE
Q 005742 439 GYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIY 518 (679)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF 518 (679)
.+++.. . ...........+...+. ...+++|||
T Consensus 246 ------------------~q~v~v-------------------~--------~e~Kl~~lv~~L~~ll~--e~g~~vLVF 278 (844)
T TIGR02621 246 ------------------VKLVPP-------------------S--------DEKFLSTMVKELNLLMK--DSGGAILVF 278 (844)
T ss_pred ------------------EEEEec-------------------C--------hHHHHHHHHHHHHHHHh--hCCCcEEEE
Confidence 000000 0 00000000011111111 125789999
Q ss_pred eCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH-----HHHHHHhC----CC-------eeEEEEecccccCccccccc
Q 005742 519 VPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR-----RVHTEFHE----NK-------LEVVVATIAFGMGIDKLNVR 582 (679)
Q Consensus 519 ~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~-----~v~~~F~~----g~-------~~vLVaT~~~~~GiDip~v~ 582 (679)
|+|++.++.+++.|.+.++ ..+||+|++.+|+ .++++|++ |+ ..|||||+++++||||+. +
T Consensus 279 ~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d 355 (844)
T TIGR02621 279 CRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-D 355 (844)
T ss_pred ECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-c
Confidence 9999999999999998876 8999999999999 88999987 54 689999999999999986 8
Q ss_pred EEEEeCCCCCHHHHHHHhhccccCCCCc-eEEEEecC
Q 005742 583 RIIHYGWPQSLEAYYQEAGRAGRDGHLA-DCVLYANL 618 (679)
Q Consensus 583 ~VI~~d~p~s~~~y~Qr~GRagR~G~~g-~~~~l~~~ 618 (679)
+||++..| .++|+||+||+||.|+.| ..+++++.
T Consensus 356 ~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 356 HLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred eEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99998877 699999999999999863 33555543
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.4e-36 Score=332.20 Aligned_cols=328 Identities=14% Similarity=0.077 Sum_probs=216.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh---hcc-CCeEEEEcCchHHHHHHHHHHHhcCC----ceEEE
Q 005742 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA---LLT-GKVVVVISPLISLMHDQCSKLSKHGV----TACFL 243 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~---l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~----~~~~~ 243 (679)
-.|++||.+|++.++.++++++++|||+|||+++...+ +.. ..++|||+||++|+.||.+.+.+++. ....+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999999765433 223 34999999999999999999998752 22334
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
.+|.... ...+|+|+||+++.+... ..+.++++||+||||++... .+..+ ...
T Consensus 193 ~~g~~~~--------~~~~I~VaT~qsl~~~~~-----~~~~~~~~iIvDEaH~~~~~------~~~~i---l~~----- 245 (501)
T PHA02558 193 YSGTAKD--------TDAPIVVSTWQSAVKQPK-----EWFDQFGMVIVDECHLFTGK------SLTSI---ITK----- 245 (501)
T ss_pred ecCcccC--------CCCCEEEeeHHHHhhchh-----hhccccCEEEEEchhcccch------hHHHH---HHh-----
Confidence 4443321 346899999999875432 13578999999999999642 23333 111
Q ss_pred ccccCCCCCEEEEEccCChhhHHH--HHHHcCCCCCceEEec--ccCC----CCcEEEEEecCCccchhhhHhHHHHHHH
Q 005742 324 LKSLKFDIPLMALTATATIQVRED--ILKSLHMSKGTKFVLT--SFFR----PNLRFSVKHSKTSSRASYKKDFCQLIDI 395 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~--i~~~l~~~~~~~~~~~--~~~r----~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 395 (679)
++...++++|||||....... +...++ +...... .... .++.+......... .....+
T Consensus 246 ---~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~-----~~~~~~--- 311 (501)
T PHA02558 246 ---LDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPD-----EDRVKL--- 311 (501)
T ss_pred ---hhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCH-----HHhhhh---
Confidence 222567999999996543221 122222 1100000 0000 00000000000000 000000
Q ss_pred HhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccc
Q 005742 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEF 475 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (679)
. ....+....++.
T Consensus 312 -~----------------------------------------------------~~~~~~~~~~l~-------------- 324 (501)
T PHA02558 312 -K----------------------------------------------------GEDYQEEIKYIT-------------- 324 (501)
T ss_pred -c----------------------------------------------------ccchHHHHHHHh--------------
Confidence 0 000000000000
Q ss_pred cCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 005742 476 YGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV 554 (679)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v 554 (679)
....+...+...+... ..+.++||||.++++++.+++.|...+..+..+||++++++|+.+
T Consensus 325 ------------------~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i 386 (501)
T PHA02558 325 ------------------SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEM 386 (501)
T ss_pred ------------------ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 0001111111111111 125689999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEEe-cccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCccC
Q 005742 555 HTEFHENKLEVVVAT-IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL 625 (679)
Q Consensus 555 ~~~F~~g~~~vLVaT-~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~~ 625 (679)
++.|+.|+..||||| +++++|+|+|++++||++.++.|...|+||+||++|.+..+...++++.-|...++
T Consensus 387 ~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~~ 458 (501)
T PHA02558 387 KKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSVK 458 (501)
T ss_pred HHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccccc
Confidence 999999999999999 89999999999999999999999999999999999998877666677666544433
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1e-36 Score=309.72 Aligned_cols=339 Identities=25% Similarity=0.274 Sum_probs=247.6
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEeecCCcchhhhhhhhh---c-cCCeEEEEcCchHHHHH
Q 005742 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPAL---L-TGKVVVVISPLISLMHD 228 (679)
Q Consensus 154 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~l~g~d~iv~a~TGsGKTl~~~lp~l---~-~~~~vLvl~Pt~~L~~q 228 (679)
..++++.++..|+ ..|+.++.|+|.-|+.+ +++|+|.+|+.+|+||||++..++-+ + .+++.|||+|..+|++|
T Consensus 198 eLdipe~fk~~lk-~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQ 276 (830)
T COG1202 198 ELDIPEKFKRMLK-REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276 (830)
T ss_pred ccCCcHHHHHHHH-hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcc
Confidence 3478888888888 55999999999999998 78999999999999999998765543 3 48999999999999999
Q ss_pred HHHHHHh----cCCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-
Q 005742 229 QCSKLSK----HGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK- 300 (679)
Q Consensus 229 ~~~~l~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~- 300 (679)
.++.|+. +|+.+..-.|-......+ .......++|+|+|++-+..+++ .+ ..+.++..|||||+|.+-+
T Consensus 277 Ky~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLR--tg-~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 277 KYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLR--TG-KDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred hHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHH--cC-CcccccceEEeeeeeeccch
Confidence 9999876 366654433322211111 11123458999999999987777 43 5688999999999999964
Q ss_pred -CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCC
Q 005742 301 -WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (679)
Q Consensus 301 -~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~ 379 (679)
+|+-..-.+.+| +.. -+..|+++||||. .+..++.+.|+.. .+.-.-...++..++....+
T Consensus 354 ERG~RLdGLI~RL---r~l---------~~~AQ~i~LSATV--gNp~elA~~l~a~----lV~y~~RPVplErHlvf~~~ 415 (830)
T COG1202 354 ERGPRLDGLIGRL---RYL---------FPGAQFIYLSATV--GNPEELAKKLGAK----LVLYDERPVPLERHLVFARN 415 (830)
T ss_pred hcccchhhHHHHH---HHh---------CCCCeEEEEEeec--CChHHHHHHhCCe----eEeecCCCCChhHeeeeecC
Confidence 675444444444 222 3389999999999 6778889998754 12222222244444333221
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
... -.+-+.++...-
T Consensus 416 e~e--K~~ii~~L~k~E--------------------------------------------------------------- 430 (830)
T COG1202 416 ESE--KWDIIARLVKRE--------------------------------------------------------------- 430 (830)
T ss_pred chH--HHHHHHHHHHHH---------------------------------------------------------------
Confidence 110 111111111100
Q ss_pred hccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcE
Q 005742 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~ 539 (679)
|. .-.+.--.+++|||+++|+.|..|+++|..+|+++
T Consensus 431 --------~~-----------------------------------~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a 467 (830)
T COG1202 431 --------FS-----------------------------------TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA 467 (830)
T ss_pred --------Hh-----------------------------------hhhccCcCCceEEEecchhhHHHHHHHhhcCCccc
Confidence 00 00001116799999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEE---EeCCCC-CHHHHHHHhhccccCCC--CceEE
Q 005742 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII---HYGWPQ-SLEAYYQEAGRAGRDGH--LADCV 613 (679)
Q Consensus 540 ~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI---~~d~p~-s~~~y~Qr~GRagR~G~--~g~~~ 613 (679)
.+||++|+..+|+.+..+|.++++.++|+|-+++.|+|+|.-.+|+ -++..| |+.+|.|+.|||||.+- .|.++
T Consensus 468 ~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVy 547 (830)
T COG1202 468 APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVY 547 (830)
T ss_pred ccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEE
Confidence 9999999999999999999999999999999999999999844443 244444 79999999999999874 59999
Q ss_pred EEecCCCCC
Q 005742 614 LYANLSSMP 622 (679)
Q Consensus 614 ~l~~~~~~~ 622 (679)
+++.+....
T Consensus 548 llvepg~~Y 556 (830)
T COG1202 548 LLVEPGKKY 556 (830)
T ss_pred EEecCChhh
Confidence 999877543
No 60
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.4e-37 Score=362.46 Aligned_cols=324 Identities=19% Similarity=0.229 Sum_probs=228.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh
Q 005742 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
..+.+.+++.+|| +|+++|+++++.+++|+|++++||||+|||++++++++. .++++|||+||++|+.|+...+..
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 3466677777899 699999999999999999999999999999976666653 577999999999999999999988
Q ss_pred c------CCceEEEcCCCCcHHHH---HHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCC---
Q 005742 236 H------GVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH--- 303 (679)
Q Consensus 236 ~------~~~~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~--- 303 (679)
+ ++.+..++++....+.. .....+.++|+|+||+++.+.+.. .. ..++++|||||||++++||+
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~---l~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE---MK-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH---Hh-hCCCCEEEEECceeccccccccc
Confidence 4 34556666666544321 223345699999999988776552 22 26799999999999998776
Q ss_pred ------CchHHHHH-HHHHHH---------------hhccccccccCCCCC-EEEEEccCChhhHHHHHHHcCCCCCceE
Q 005742 304 ------DFRPDYRR-LSVLRE---------------NFGANNLKSLKFDIP-LMALTATATIQVREDILKSLHMSKGTKF 360 (679)
Q Consensus 304 ------~f~~~~~~-l~~~~~---------------~~~~~~~~~~~~~~~-~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 360 (679)
+|++.+.. +..+.. .+... +...+...+ ++++|||.+.. .++...+. +...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~---~~l~ 294 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKE-IEKIGNKIGCLIVASATGKAK--GDRVKLYR---ELLG 294 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhcCCCccEEEEEecCCCch--hHHHHHhh---cCeE
Confidence 68888764 111110 00000 111233445 56799999753 22222221 1111
Q ss_pred EecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCC
Q 005742 361 VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (679)
Q Consensus 361 ~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (679)
+.....+++++..+..
T Consensus 295 f~v~~~~~~lr~i~~~---------------------------------------------------------------- 310 (1638)
T PRK14701 295 FEVGSGRSALRNIVDV---------------------------------------------------------------- 310 (1638)
T ss_pred EEecCCCCCCCCcEEE----------------------------------------------------------------
Confidence 1111112211111100
Q ss_pred CCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeC
Q 005742 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVP 520 (679)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~ 520 (679)
|+. .. ......+++++... ...+||||+
T Consensus 311 ------------------yi~-------------------------------~~-~~~k~~L~~ll~~~--g~~gIVF~~ 338 (1638)
T PRK14701 311 ------------------YLN-------------------------------PE-KIIKEHVRELLKKL--GKGGLIFVP 338 (1638)
T ss_pred ------------------EEE-------------------------------CC-HHHHHHHHHHHHhC--CCCeEEEEe
Confidence 000 00 00012333444332 458999999
Q ss_pred chhH---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEe----cccccCccccc-ccEEEEeCCCC-
Q 005742 521 TRKE---TLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT----IAFGMGIDKLN-VRRIIHYGWPQ- 591 (679)
Q Consensus 521 t~~~---~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT----~~~~~GiDip~-v~~VI~~d~p~- 591 (679)
+++. ++.++++|...|+++..+||+ |..++++|++|+++||||| ++++||||+|+ |++|||||+|.
T Consensus 339 t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~ 413 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKF 413 (1638)
T ss_pred ccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCC
Confidence 9886 589999999999999999995 8899999999999999999 58999999999 99999999999
Q ss_pred --CHHHHHHHh-------------hccccCCCCceEEE
Q 005742 592 --SLEAYYQEA-------------GRAGRDGHLADCVL 614 (679)
Q Consensus 592 --s~~~y~Qr~-------------GRagR~G~~g~~~~ 614 (679)
+++.|.|.. ||+||.|.++.+++
T Consensus 414 ~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 451 (1638)
T PRK14701 414 RFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVL 451 (1638)
T ss_pred CcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHH
Confidence 888888876 99999998877763
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.4e-35 Score=312.10 Aligned_cols=300 Identities=15% Similarity=0.140 Sum_probs=193.1
Q ss_pred CEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHhc-CCceEEEcCCCCcH-----------HH
Q 005742 190 DCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSKH-GVTACFLGSGQPDN-----------KV 252 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~~-~~~~~~~~~~~~~~-----------~~ 252 (679)
++++.+|||||||++|++|++ ..+.+++|++|+++|+.|+.+.+..+ +.....++++.... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 589999999999999999988 35689999999999999999999985 54444343322100 00
Q ss_pred HHHHH-c-----CCccEEEEChHHHHHHHHH-H-HHHHhh--cCceEEEeecccccccCCCCchHHHHHHHHHHHhhccc
Q 005742 253 EQKAL-R-----GMYSIIYVCPETVIRLIKP-L-QRLAES--RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322 (679)
Q Consensus 253 ~~~~~-~-----~~~~Ili~Tp~~l~~ll~~-~-~~~~~~--~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~ 322 (679)
..... . -..+|+|+||+++...+.. . .....+ ....+|||||||++.+++ +.. +..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~--~~~-l~~~l~~l~----- 152 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT--LAL-ILAVLEVLK----- 152 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH--HHH-HHHHHHHHH-----
Confidence 00000 1 1357999999998865442 1 111222 234899999999998754 222 322222211
Q ss_pred cccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccc
Q 005742 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (679)
Q Consensus 323 ~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (679)
..+.|+++||||++.... ++........... .....+.. ... .
T Consensus 153 -----~~~~~~i~~SATlp~~l~-~~~~~~~~~~~~~----~~~~~~~~-~~~----~---------------------- 195 (358)
T TIGR01587 153 -----DNDVPILLMSATLPKFLK-EYAEKIGYVEFNE----PLDLKEER-RFE----R---------------------- 195 (358)
T ss_pred -----HcCCCEEEEecCchHHHH-HHHhcCCCccccc----CCCCcccc-ccc----c----------------------
Confidence 126899999999974432 2222221110000 00000000 000 0
Q ss_pred cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCC
Q 005742 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (679)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (679)
..+.
T Consensus 196 ------------------------------------------------------~~~~---------------------- 199 (358)
T TIGR01587 196 ------------------------------------------------------HRFI---------------------- 199 (358)
T ss_pred ------------------------------------------------------ccce----------------------
Confidence 0000
Q ss_pred CCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCC--cEEEecCCCCHHHHHH----HHH
Q 005742 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV--KAAAYNASLPKSQLRR----VHT 556 (679)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~~~hg~~~~~~R~~----v~~ 556 (679)
........+...+...+.....++++||||++++.++.+++.|.+.+. .+..+||++++.+|.+ +++
T Consensus 200 -------~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 200 -------KIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred -------eeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 000000011112222222223367999999999999999999988766 5999999999999976 488
Q ss_pred HHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCc----eEEEEecCCC
Q 005742 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA----DCVLYANLSS 620 (679)
Q Consensus 557 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g----~~~~l~~~~~ 620 (679)
.|++|+..|||||+++++|||++ +++||++..| +.+|+||+||+||.|+.+ .+++|....+
T Consensus 273 ~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 273 EMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999999999999999995 8999998776 789999999999998653 6666665444
No 62
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2e-35 Score=344.60 Aligned_cols=308 Identities=20% Similarity=0.229 Sum_probs=212.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc
Q 005742 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 160 ~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
+..+.+++.+|+ +|+++|+++++.++.|+|++++||||+|||..++.+++ ..++++|||+||++|+.|+.+.++++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 345567777788 89999999999999999999999999999964433332 25789999999999999999999986
Q ss_pred C----CceEEEcCCCCc----HHH-HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC---
Q 005742 237 G----VTACFLGSGQPD----NKV-EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD--- 304 (679)
Q Consensus 237 ~----~~~~~~~~~~~~----~~~-~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~--- 304 (679)
+ +.+..+.++... ... ......+.++|+|+||+++.+++. .+...++++||+||||++++++.+
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~----~l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD----ELPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH----hccccccCEEEEEChHHhhhcccchhh
Confidence 3 444444444331 111 222234568999999999987654 344567999999999999874422
Q ss_pred ------ch-HHHHHHHH-----------------HHHhhccccccccCCCCCEEEEEccCChh-hHHHHHH-HcCCCCCc
Q 005742 305 ------FR-PDYRRLSV-----------------LRENFGANNLKSLKFDIPLMALTATATIQ-VREDILK-SLHMSKGT 358 (679)
Q Consensus 305 ------f~-~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~l~lSAT~~~~-~~~~i~~-~l~~~~~~ 358 (679)
|. +.+..+.. +.+.+.. ..+...|++++|||+++. +...++. .+++..
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~----~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v-- 296 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAE----LKDKKGVLVVSSATGRPRGNRVKLFRELLGFEV-- 296 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhh----cccCCceEEEEeCCCCccchHHHHhhccceEEe--
Confidence 53 33333322 2221110 011267899999999864 3322221 111100
Q ss_pred eEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCC
Q 005742 359 KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGD 438 (679)
Q Consensus 359 ~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (679)
-.......++....
T Consensus 297 --~~~~~~~rnI~~~y---------------------------------------------------------------- 310 (1176)
T PRK09401 297 --GSPVFYLRNIVDSY---------------------------------------------------------------- 310 (1176)
T ss_pred --cCcccccCCceEEE----------------------------------------------------------------
Confidence 00000000000000
Q ss_pred CCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEE
Q 005742 439 GYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIY 518 (679)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF 518 (679)
+ ....+...+.+++... +.++|||
T Consensus 311 ---------------------i---------------------------------~~~~k~~~L~~ll~~l--~~~~LIF 334 (1176)
T PRK09401 311 ---------------------I---------------------------------VDEDSVEKLVELVKRL--GDGGLIF 334 (1176)
T ss_pred ---------------------E---------------------------------EcccHHHHHHHHHHhc--CCCEEEE
Confidence 0 0001233334444332 3589999
Q ss_pred eCchhH---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEE----ecccccCccccc-ccEEEEeCCC
Q 005742 519 VPTRKE---TLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLN-VRRIIHYGWP 590 (679)
Q Consensus 519 ~~t~~~---~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVa----T~~~~~GiDip~-v~~VI~~d~p 590 (679)
|++++. ++.++++|...|+.+..+||+| ++.+++|++|+++|||| |++++||||+|+ |++|||||+|
T Consensus 335 v~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 335 VPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred EecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCC
Confidence 999888 9999999999999999999999 23459999999999999 699999999999 8999999999
Q ss_pred C------CHHHHHHHhhcccc
Q 005742 591 Q------SLEAYYQEAGRAGR 605 (679)
Q Consensus 591 ~------s~~~y~Qr~GRagR 605 (679)
. ....|.||+||+-.
T Consensus 410 ~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 410 KFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CEEEeccccccCHHHHHHHHh
Confidence 8 67889999999974
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.5e-36 Score=332.53 Aligned_cols=335 Identities=26% Similarity=0.276 Sum_probs=243.9
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEeecCCcchhhhhhhhhc---c-CCeEEEEcCchHHHHHHHH
Q 005742 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALL---T-GKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 157 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l-~g~d~iv~a~TGsGKTl~~~lp~l~---~-~~~vLvl~Pt~~L~~q~~~ 231 (679)
..+.+...++ ..++.++.+.|++++...+ .++|+++++|||+|||+++++.++. + ++++|+|||+++|+.|.++
T Consensus 16 ~~~~v~~i~~-~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~ 94 (766)
T COG1204 16 LDDRVLEILK-GDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYE 94 (766)
T ss_pred ccHHHHHHhc-cCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHH
Confidence 4455556665 4578889999999998765 4599999999999999999998874 3 5899999999999999999
Q ss_pred HHH---hcCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCCCch
Q 005742 232 KLS---KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFR 306 (679)
Q Consensus 232 ~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~~f~ 306 (679)
+|+ .+|+++...+++...... .-..++|+|+|||++..+++. .......+++|||||+|.+.+ +|...+
T Consensus 95 ~~~~~~~~GirV~~~TgD~~~~~~----~l~~~~ViVtT~EK~Dsl~R~--~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 95 EFSRLEELGIRVGISTGDYDLDDE----RLARYDVIVTTPEKLDSLTRK--RPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HhhhHHhcCCEEEEecCCcccchh----hhccCCEEEEchHHhhHhhhc--CcchhhcccEEEEeeeeecCCcccCceeh
Confidence 998 579999999888765432 224589999999999888773 333677899999999999975 576666
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEe-cccCCCCcE-EEEEecCCccchh
Q 005742 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLR-FSVKHSKTSSRAS 384 (679)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~r~~~~-~~v~~~~~~~~~~ 384 (679)
....++..+. ...++++||||+ .+..++..|++-......+. .+.+++-.. ..+........
T Consensus 169 ~iv~r~~~~~------------~~~rivgLSATl--pN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-- 232 (766)
T COG1204 169 SIVARMRRLN------------ELIRIVGLSATL--PNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-- 232 (766)
T ss_pred hHHHHHHhhC------------cceEEEEEeeec--CCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc--
Confidence 6666653331 147999999999 67889999997543211111 111111110 00000000000
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
T Consensus 233 -------------------------------------------------------------------------------- 232 (766)
T COG1204 233 -------------------------------------------------------------------------------- 232 (766)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHh---------
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCG--------- 534 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~--------- 534 (679)
......-...++++.+.+ ..+++||||++++.+...|..|..
T Consensus 233 ----------------------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~ 284 (766)
T COG1204 233 ----------------------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDD 284 (766)
T ss_pred ----------------------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChh
Confidence 000011112222222222 266999999999999999999883
Q ss_pred ----------------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEE-
Q 005742 535 ----------------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII- 585 (679)
Q Consensus 535 ----------------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI- 585 (679)
...++..||++|+.++|..+.+.|+.|+++|||||.+++.|+|+|.=.+||
T Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk 364 (766)
T COG1204 285 EKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK 364 (766)
T ss_pred hhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe
Confidence 123578999999999999999999999999999999999999999866666
Q ss_pred ---EeC-----CCCCHHHHHHHhhccccCCC--CceEEEEecCCCCC
Q 005742 586 ---HYG-----WPQSLEAYYQEAGRAGRDGH--LADCVLYANLSSMP 622 (679)
Q Consensus 586 ---~~d-----~p~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~~~~ 622 (679)
.|+ .+-+..+++|+.|||||.|- .|.++++.+..+..
T Consensus 365 ~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~ 411 (766)
T COG1204 365 DTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDEL 411 (766)
T ss_pred eeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccch
Confidence 566 45678999999999999874 48888888544443
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.8e-35 Score=324.44 Aligned_cols=308 Identities=16% Similarity=0.185 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCcchhh---------hhhhhhc---------cCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 176 NFQKEALSAWLAHHDCLVLAATGSGKSLC---------FQIPALL---------TGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 176 ~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~---------~~lp~l~---------~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
.+|.++++.+++|+++|++|+||+|||.+ |++|.+. .+++++|++||++|+.|+...+.+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999986 4333321 2568999999999999999888752
Q ss_pred ------CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHH
Q 005742 237 ------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310 (679)
Q Consensus 237 ------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~ 310 (679)
+..+....++.... .........+|+|+|++... ..+.++++|||||||++...+. .+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~--~~~t~~k~~~Ilv~T~~L~l---------~~L~~v~~VVIDEaHEr~~~~D----llL 311 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDE--LINTNPKPYGLVFSTHKLTL---------NKLFDYGTVIIDEVHEHDQIGD----III 311 (675)
T ss_pred CccccCCceEEEEECCcchH--HhhcccCCCCEEEEeCcccc---------cccccCCEEEccccccCccchh----HHH
Confidence 33445556665421 11222235699999976311 1356899999999999976541 111
Q ss_pred HHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHH
Q 005742 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390 (679)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~ 390 (679)
.+ .... .+...|+++||||++.+.. .+..+++- ...+........++............ ..
T Consensus 312 ~l---lk~~-------~~~~rq~ILmSATl~~dv~-~l~~~~~~--p~~I~I~grt~~pV~~~yi~~~~~~~--~~---- 372 (675)
T PHA02653 312 AV---ARKH-------IDKIRSLFLMTATLEDDRD-RIKEFFPN--PAFVHIPGGTLFPISEVYVKNKYNPK--NK---- 372 (675)
T ss_pred HH---HHHh-------hhhcCEEEEEccCCcHhHH-HHHHHhcC--CcEEEeCCCcCCCeEEEEeecCcccc--cc----
Confidence 11 1111 0113489999999986654 34555541 22222211111122111100000000 00
Q ss_pred HHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccc
Q 005742 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (679)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (679)
..++
T Consensus 373 ------------------------------------------------------------------~~y~---------- 376 (675)
T PHA02653 373 ------------------------------------------------------------------RAYI---------- 376 (675)
T ss_pred ------------------------------------------------------------------hhhh----------
Confidence 0000
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchHHHhhhccCC--CCCCcEEEEeCchhHHHHHHHHHHhC--CCcEEEecCCC
Q 005742 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP--LEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASL 546 (679)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~~hg~~ 546 (679)
......++..+... ...+++|||++++++++.+++.|.+. ++.+..+||+|
T Consensus 377 -------------------------~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~L 431 (675)
T PHA02653 377 -------------------------EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKV 431 (675)
T ss_pred -------------------------HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCc
Confidence 00001111222211 12468999999999999999999987 78999999999
Q ss_pred CHHHHHHHHHHH-hCCCeeEEEEecccccCcccccccEEEEeC---CCC---------CHHHHHHHhhccccCCCCceEE
Q 005742 547 PKSQLRRVHTEF-HENKLEVVVATIAFGMGIDKLNVRRIIHYG---WPQ---------SLEAYYQEAGRAGRDGHLADCV 613 (679)
Q Consensus 547 ~~~~R~~v~~~F-~~g~~~vLVaT~~~~~GiDip~v~~VI~~d---~p~---------s~~~y~Qr~GRagR~G~~g~~~ 613 (679)
++. ++++++| ++|+.+|||||+++++|||||+|++||++| .|. |..+|+||+|||||. ++|.|+
T Consensus 432 sq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~ 508 (675)
T PHA02653 432 PNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYV 508 (675)
T ss_pred CHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEE
Confidence 975 5677777 689999999999999999999999999999 565 888999999999999 899999
Q ss_pred EEecCCCC
Q 005742 614 LYANLSSM 621 (679)
Q Consensus 614 ~l~~~~~~ 621 (679)
.|++..+.
T Consensus 509 rLyt~~~~ 516 (675)
T PHA02653 509 YFYDLDLL 516 (675)
T ss_pred EEECHHHh
Confidence 99987664
No 65
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1e-34 Score=336.53 Aligned_cols=436 Identities=17% Similarity=0.188 Sum_probs=249.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cCCeEEEEcCchHHHHHHHHHHHhc-CC---ceEEE
Q 005742 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKH-GV---TACFL 243 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~-~~---~~~~~ 243 (679)
-++++||.+++..++.+ |+++++|||+|||+++++++.. .++++|||+||++|+.||.+.++++ ++ .+..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 37999999999998876 9999999999999998887753 4789999999999999999999885 44 44555
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
.++.... . ........+|+|+||+.+...+. .+.+.+.++++|||||||++.+.. .+..+.....
T Consensus 93 ~g~~~~~-~-r~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~~~------ 157 (773)
T PRK13766 93 TGEVSPE-K-RAELWEKAKVIVATPQVIENDLI--AGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAERYH------ 157 (773)
T ss_pred eCCCCHH-H-HHHHHhCCCEEEECHHHHHHHHH--cCCCChhhCcEEEEECCccccccc-----cHHHHHHHHH------
Confidence 5544432 2 22334457999999999876554 455567789999999999997421 1222222111
Q ss_pred ccccCCCCCEEEEEccCChh--hHHHHHHHcCCCCCceEEecc--------cCCCCcEEEEEecCCccchhhhHhHHHHH
Q 005742 324 LKSLKFDIPLMALTATATIQ--VREDILKSLHMSKGTKFVLTS--------FFRPNLRFSVKHSKTSSRASYKKDFCQLI 393 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~~--------~~r~~~~~~v~~~~~~~~~~~~~~~~~~~ 393 (679)
.......+++|||||... ....+...|++.. ..+... +.++.+.+...... .....+...+
T Consensus 158 --~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~--v~~~~~~~~~v~~~~~~~~v~~~~v~l~-----~~~~~i~~~l 228 (773)
T PRK13766 158 --EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEH--VEVRTEDDPDVKPYVHKVKIEWVRVELP-----EELKEIRDLL 228 (773)
T ss_pred --hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceE--EEEcCCCChhHHhhhccceeEEEEeCCc-----HHHHHHHHHH
Confidence 112256699999999543 3334455554321 111111 11122222211111 1112222222
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccc-cCCCCCCCCC---CCCccCCCCCCCcchhhhhhccCCccccc
Q 005742 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEES-RISPNIGDGY---YDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (679)
..+...+.............. . ......+.... .........+ +.................++.......+.
T Consensus 229 ~~~~~~~l~~l~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 304 (773)
T PRK13766 229 NEALKDRLKKLKELGVIVSIS-P---DVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALR 304 (773)
T ss_pred HHHHHHHHHHHHHCCCcccCC-C---CcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 222211110000000000000 0 00000000000 0000000000 00000000000000011111111111111
Q ss_pred cccccccCCCCCCCCC-------Cc--------cchhhccccCchHHHhhhccCC---CCCCcEEEEeCchhHHHHHHHH
Q 005742 470 VACGEFYGHSPHRDRD-------TD--------RSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKY 531 (679)
Q Consensus 470 ~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~~ll~~l~~~---~~~~~~IVF~~t~~~~~~l~~~ 531 (679)
..+..+.......... .+ .........+|...+.+.|.+. ....++||||+++++++.|+++
T Consensus 305 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~ 384 (773)
T PRK13766 305 RYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDL 384 (773)
T ss_pred HHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 1111111100000000 00 0001112345666666666553 3567999999999999999999
Q ss_pred HHhCCCcEEEecCC--------CCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhcc
Q 005742 532 LCGFGVKAAAYNAS--------LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603 (679)
Q Consensus 532 L~~~~~~~~~~hg~--------~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 603 (679)
|...++.+..+||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+
T Consensus 385 L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 385 LEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred HHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999999986 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEecCCCCC--ccCCCCCCHHHHHHH
Q 005742 604 GRDGHLADCVLYANLSSMP--TLLPSRRSEDQTKQA 637 (679)
Q Consensus 604 gR~G~~g~~~~l~~~~~~~--~~~~~~~~~~~~~~~ 637 (679)
||.|. |.+++++...... .++...+.+..+...
T Consensus 465 gR~~~-~~v~~l~~~~t~ee~~y~~~~~ke~~~~~~ 499 (773)
T PRK13766 465 GRQEE-GRVVVLIAKGTRDEAYYWSSRRKEKKMKEE 499 (773)
T ss_pred CcCCC-CEEEEEEeCCChHHHHHHHhhHHHHHHHHH
Confidence 99865 7788877655432 333343334444333
No 66
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-36 Score=277.94 Aligned_cols=303 Identities=21% Similarity=0.306 Sum_probs=222.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc------CCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~------~~~vLvl~Pt~~L~~q~ 229 (679)
.+.+++..++- .+||.+|..+|.++||.+.-|.|++.+|..|.|||.+|++..++. ...+|++|.||+|+.|+
T Consensus 48 llkpellraiv-dcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi 126 (387)
T KOG0329|consen 48 LLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQI 126 (387)
T ss_pred hcCHHHHHHHH-hccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHH
Confidence 45566666666 579999999999999998889999999999999999999988862 35789999999999999
Q ss_pred HHHHHhc-----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC
Q 005742 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 230 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
..++.++ ++++.++.||....+.+. .+...+||+|+||++++.+.+ .+.+++.+++.+|+|||+.++++- +
T Consensus 127 ~~ey~rfskymP~vkvaVFfGG~~Ikkdee-~lk~~PhivVgTPGrilALvr--~k~l~lk~vkhFvlDEcdkmle~l-D 202 (387)
T KOG0329|consen 127 SKEYERFSKYMPSVKVSVFFGGLFIKKDEE-LLKNCPHIVVGTPGRILALVR--NRSLNLKNVKHFVLDECDKMLEQL-D 202 (387)
T ss_pred HHHHHHHHhhCCCceEEEEEcceeccccHH-HHhCCCeEEEcCcHHHHHHHH--hccCchhhcceeehhhHHHHHHHH-H
Confidence 8887775 577788888877665443 344579999999999999888 788899999999999999997632 2
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~ 384 (679)
.+.....| .+..|+..|++.+|||++.+.+.-..+.+ +.++.+-+....
T Consensus 203 MrRDvQEi-----------fr~tp~~KQvmmfsatlskeiRpvC~kFm--------------QdPmEi~vDdE~------ 251 (387)
T KOG0329|consen 203 MRRDVQEI-----------FRMTPHEKQVMMFSATLSKEIRPVCHKFM--------------QDPMEIFVDDEA------ 251 (387)
T ss_pred HHHHHHHH-----------hhcCcccceeeeeeeecchhhHHHHHhhh--------------cCchhhhccchh------
Confidence 34444444 45567789999999999888766444433 333322221100
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
.-.++-+...|.+.
T Consensus 252 -KLtLHGLqQ~YvkL----------------------------------------------------------------- 265 (387)
T KOG0329|consen 252 -KLTLHGLQQYYVKL----------------------------------------------------------------- 265 (387)
T ss_pred -hhhhhhHHHHHHhh-----------------------------------------------------------------
Confidence 00111111111110
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecC
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg 544 (679)
.. ..+...+..|...+...+++||+.+... |
T Consensus 266 -----------------------------ke-~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l------------ 296 (387)
T KOG0329|consen 266 -----------------------------KE-NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L------------ 296 (387)
T ss_pred -----------------------------hh-hhhhhhhhhhhhhhhhcceeEeeehhhh-------h------------
Confidence 00 1111222233334456799999998754 1
Q ss_pred CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCCCcc
Q 005742 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL 624 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~~ 624 (679)
+ | ..+ +|||++++||+||..++.||+||+|.+..+|+||+|||||.|.+|.++.|+...+....
T Consensus 297 --~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~i 360 (387)
T KOG0329|consen 297 --S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI 360 (387)
T ss_pred --h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHH
Confidence 0 2 123 89999999999999999999999999999999999999999999999999986655544
Q ss_pred C
Q 005742 625 L 625 (679)
Q Consensus 625 ~ 625 (679)
+
T Consensus 361 L 361 (387)
T KOG0329|consen 361 L 361 (387)
T ss_pred h
Confidence 4
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=326.77 Aligned_cols=336 Identities=24% Similarity=0.301 Sum_probs=245.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHh
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
+...|.+. |+..|+++|.+|+..+.+|+|++|+.+||||||.+|++|++. ...++|+|.||++|+++|.++|++
T Consensus 59 l~~~l~~~-g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 59 LKSALVKA-GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRE 137 (851)
T ss_pred HHHHHHHh-ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHH
Confidence 35555544 777899999999999999999999999999999999999984 355789999999999999999998
Q ss_pred c----C--CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHH-HHHHHH-HHhhcCceEEEeeccccccc-CCCCch
Q 005742 236 H----G--VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRL-IKPLQR-LAESRGIALFAIDEVHCVSK-WGHDFR 306 (679)
Q Consensus 236 ~----~--~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~l-l~~~~~-~~~~~~~~lvViDEaH~l~~-~g~~f~ 306 (679)
+ + +.... +.|............+.++|+++||.|+..+ +..... ...+.++++||+||+|.+-+ .|.++.
T Consensus 138 ~~~~~~~~v~~~~-y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 138 LISDLPGKVTFGR-YTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred HHHhCCCcceeee-ecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHH
Confidence 6 3 33333 3444444444467788899999999999873 332222 33456799999999999965 787888
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCce-EEecccCCCCcEEEEEecCCccc---
Q 005742 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTK-FVLTSFFRPNLRFSVKHSKTSSR--- 382 (679)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~~r~~~~~~v~~~~~~~~--- 382 (679)
-.+++|..+.+.+. .+.|+++.|||.. +..++...+....-.. +.....-+....+.+........
T Consensus 217 ~llRRL~~~~~~~~--------~~~q~i~~SAT~~--np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 217 LLLRRLLRRLRRYG--------SPLQIICTSATLA--NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred HHHHHHHHHHhccC--------CCceEEEEecccc--ChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh
Confidence 88999988866554 3789999999994 3344444443221111 11112222222222222100000
Q ss_pred --hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhh
Q 005742 383 --ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (679)
Q Consensus 383 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (679)
.+....
T Consensus 287 ~r~s~~~~------------------------------------------------------------------------ 294 (851)
T COG1205 287 IRRSALAE------------------------------------------------------------------------ 294 (851)
T ss_pred cccchHHH------------------------------------------------------------------------
Confidence 000000
Q ss_pred ccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHH----HHHHhCC
Q 005742 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIA----KYLCGFG 536 (679)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~----~~L~~~~ 536 (679)
...+...+.. ..-++|+|+.+++.++.++ ..+...+
T Consensus 295 --------------------------------------~~~~~~~~~~--~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~ 334 (851)
T COG1205 295 --------------------------------------LATLAALLVR--NGIQTLVFFRSRKQVELLYLSPRRRLVREG 334 (851)
T ss_pred --------------------------------------HHHHHHHHHH--cCceEEEEEehhhhhhhhhhchhHHHhhcc
Confidence 0011111111 1559999999999999997 4444445
Q ss_pred ----CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC-CHHHHHHHhhccccCCCCce
Q 005742 537 ----VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLAD 611 (679)
Q Consensus 537 ----~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~g~ 611 (679)
..+..++|+|..++|.++...|++|++.++++|++++.|||+.+++.||.++.|. +..+++||.|||||.++.+.
T Consensus 335 ~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l 414 (851)
T COG1205 335 GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL 414 (851)
T ss_pred hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce
Confidence 6789999999999999999999999999999999999999999999999999999 99999999999999998888
Q ss_pred EEEEecCCC
Q 005742 612 CVLYANLSS 620 (679)
Q Consensus 612 ~~~l~~~~~ 620 (679)
.++.+..+.
T Consensus 415 ~~~v~~~~~ 423 (851)
T COG1205 415 VLVVLRSDP 423 (851)
T ss_pred EEEEeCCCc
Confidence 888776443
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.4e-34 Score=300.87 Aligned_cols=296 Identities=16% Similarity=0.163 Sum_probs=197.3
Q ss_pred HHHHHHHHHHcCCC--EEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhc--------CCceEEEcCC
Q 005742 177 FQKEALSAWLAHHD--CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH--------GVTACFLGSG 246 (679)
Q Consensus 177 ~Q~~ai~~~l~g~d--~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~--------~~~~~~~~~~ 246 (679)
+|.++++++.++.+ +++++|||+|||++|++|++..+.++++++|+++|+.|+.+.+.++ +..+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 69999999998874 7889999999999999999988889999999999999999998875 2223333332
Q ss_pred CCcHH--H------------------HHHHHcCCccEEEEChHHHHHHHHHHHH------HHhhcCceEEEeeccccccc
Q 005742 247 QPDNK--V------------------EQKALRGMYSIIYVCPETVIRLIKPLQR------LAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 247 ~~~~~--~------------------~~~~~~~~~~Ili~Tp~~l~~ll~~~~~------~~~~~~~~lvViDEaH~l~~ 300 (679)
.... . ........++|+++||+++..++..+.. ...+..+++||+||+|.+..
T Consensus 81 -~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 81 -TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred -chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1111 0 0111234688999999999766542211 11246899999999999976
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCC-------------
Q 005742 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR------------- 367 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r------------- 367 (679)
++......+.....+..... ...+++++|||+++.....+...+.+..+...+....+.
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~--------~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFE--------CRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ccchhhhhhhHHHHHHHhhh--------cCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 55433332222222222111 146899999999987777766543222222111111000
Q ss_pred -------CCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCC
Q 005742 368 -------PNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (679)
Q Consensus 368 -------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (679)
+++...+.... ... ..
T Consensus 232 ~~~~~~~~~i~~~~~~~~-~~~---~~----------------------------------------------------- 254 (357)
T TIGR03158 232 QSFRPVLPPVELELIPAP-DFK---EE----------------------------------------------------- 254 (357)
T ss_pred cccceeccceEEEEEeCC-chh---HH-----------------------------------------------------
Confidence 11111111100 000 00
Q ss_pred CCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccC---CCCCCcEEE
Q 005742 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE---PLEDGLTII 517 (679)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~~~~IV 517 (679)
....+++.+.+ ....+++||
T Consensus 255 ---------------------------------------------------------~l~~l~~~i~~~~~~~~~~k~LI 277 (357)
T TIGR03158 255 ---------------------------------------------------------ELSELAEEVIERFRQLPGERGAI 277 (357)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHhccCCCeEEE
Confidence 01111111111 123569999
Q ss_pred EeCchhHHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHH
Q 005742 518 YVPTRKETLSIAKYLCGFG--VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595 (679)
Q Consensus 518 F~~t~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~ 595 (679)
||+|++.++.+++.|.+.+ +.+..+||.+++.+|+++ ++..|||||+++++|||++.+ +|| ++ |.+..+
T Consensus 278 f~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~ 348 (357)
T TIGR03158 278 ILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAA 348 (357)
T ss_pred EECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHH
Confidence 9999999999999999864 578899999999998755 378999999999999999986 666 55 899999
Q ss_pred HHHHhhccc
Q 005742 596 YYQEAGRAG 604 (679)
Q Consensus 596 y~Qr~GRag 604 (679)
|+||+||+|
T Consensus 349 yiqR~GR~g 357 (357)
T TIGR03158 349 FWQRLGRLG 357 (357)
T ss_pred HhhhcccCC
Confidence 999999997
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.8e-34 Score=326.64 Aligned_cols=303 Identities=18% Similarity=0.225 Sum_probs=209.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCcchhhhhhhhhcc---CCeEEEEcCchHHHHHHHHHHHh-cC----CceEEEcCCCCcH
Q 005742 179 KEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKVVVVISPLISLMHDQCSKLSK-HG----VTACFLGSGQPDN 250 (679)
Q Consensus 179 ~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~---~~~vLvl~Pt~~L~~q~~~~l~~-~~----~~~~~~~~~~~~~ 250 (679)
.+.+.++.+++++++.+|||||||++|.++++.. .+++||++|||+++.|.++.+.+ ++ ..+.....+...
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~- 89 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK- 89 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc-
Confidence 3455666678999999999999999999988853 46999999999999999999865 33 333333322211
Q ss_pred HHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc-ccCCCCchHHHHHHHHHHHhhccccccccCC
Q 005742 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV-SKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329 (679)
Q Consensus 251 ~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l-~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~ 329 (679)
.....+|+|+||+++.+++. . ...+.++++|||||+|.. .+. ++. +..+..+. +.+++
T Consensus 90 ------~~~~t~I~v~T~G~Llr~l~--~-d~~L~~v~~IIlDEaHER~l~~--Dl~--L~ll~~i~--------~~lr~ 148 (812)
T PRK11664 90 ------VGPNTRLEVVTEGILTRMIQ--R-DPELSGVGLVILDEFHERSLQA--DLA--LALLLDVQ--------QGLRD 148 (812)
T ss_pred ------cCCCCcEEEEChhHHHHHHh--h-CCCcCcCcEEEEcCCCcccccc--chH--HHHHHHHH--------HhCCc
Confidence 22346899999999988766 2 346889999999999974 221 121 11111222 22345
Q ss_pred CCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhcccccccccc
Q 005742 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSA 409 (679)
Q Consensus 330 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (679)
+.++++||||++.... ..+++ ....+.... ...++..... .......+...
T Consensus 149 ~lqlilmSATl~~~~l---~~~~~--~~~~I~~~g-r~~pV~~~y~--~~~~~~~~~~~--------------------- 199 (812)
T PRK11664 149 DLKLLIMSATLDNDRL---QQLLP--DAPVIVSEG-RSFPVERRYQ--PLPAHQRFDEA--------------------- 199 (812)
T ss_pred cceEEEEecCCCHHHH---HHhcC--CCCEEEecC-ccccceEEec--cCchhhhHHHH---------------------
Confidence 7899999999976533 33332 111111110 0001100000 00000000000
Q ss_pred ccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccc
Q 005742 410 IPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRS 489 (679)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (679)
T Consensus 200 -------------------------------------------------------------------------------- 199 (812)
T PRK11664 200 -------------------------------------------------------------------------------- 199 (812)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEE
Q 005742 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566 (679)
Q Consensus 490 ~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vL 566 (679)
....+...+.+ ..+.+|||++++++++.+++.|.+ .++.+..+||+|++++|+.+++.|++|+.+||
T Consensus 200 --------v~~~l~~~l~~--~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVl 269 (812)
T PRK11664 200 --------VARATAELLRQ--ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVV 269 (812)
T ss_pred --------HHHHHHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEE
Confidence 00011122222 257899999999999999999987 57889999999999999999999999999999
Q ss_pred EEecccccCcccccccEEEEeCCCCC------------------HHHHHHHhhccccCCCCceEEEEecCCCCCc
Q 005742 567 VATIAFGMGIDKLNVRRIIHYGWPQS------------------LEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (679)
Q Consensus 567 VaT~~~~~GiDip~v~~VI~~d~p~s------------------~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~~ 623 (679)
|||+++++|||||+|++||++|++.. ..+|+||+|||||. ++|.|+.+|+..+...
T Consensus 270 vATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 270 LATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred EecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 99999999999999999999887753 35899999999999 6999999998776544
No 70
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.8e-34 Score=322.28 Aligned_cols=303 Identities=18% Similarity=0.180 Sum_probs=210.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh-cC----CceEEEcCCCCc
Q 005742 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-HG----VTACFLGSGQPD 249 (679)
Q Consensus 178 Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-~~----~~~~~~~~~~~~ 249 (679)
-.+.+..+..++++|++++||||||++|.++++. .+++++|+.|+|+++.|+++.+.+ ++ ..+.....+..
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~- 85 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN- 85 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-
Confidence 3455566667889999999999999999999874 467999999999999999999864 33 22222222211
Q ss_pred HHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccc-cccCCCCchHHHHHHHHHHHhhccccccccC
Q 005742 250 NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC-VSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328 (679)
Q Consensus 250 ~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~-l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~ 328 (679)
......+|+|+||+++.+++. . ...+.++++|||||+|. .++.. |.-.+ +..+.. .++
T Consensus 86 ------~~s~~t~I~v~T~G~Llr~l~--~-d~~L~~v~~VIiDEaHER~L~~D--l~L~l--l~~i~~--------~lr 144 (819)
T TIGR01970 86 ------KVSRRTRLEVVTEGILTRMIQ--D-DPELDGVGALIFDEFHERSLDAD--LGLAL--ALDVQS--------SLR 144 (819)
T ss_pred ------ccCCCCcEEEECCcHHHHHHh--h-CcccccCCEEEEeccchhhhccc--hHHHH--HHHHHH--------hcC
Confidence 123457999999999988766 2 34688999999999995 54322 22211 111211 234
Q ss_pred CCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccc
Q 005742 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKS 408 (679)
Q Consensus 329 ~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (679)
++.++++||||+..... ..+++- ...+..... ..++. +..........+...
T Consensus 145 ~dlqlIlmSATl~~~~l---~~~l~~--~~vI~~~gr-~~pVe--~~y~~~~~~~~~~~~-------------------- 196 (819)
T TIGR01970 145 EDLKILAMSATLDGERL---SSLLPD--APVVESEGR-SFPVE--IRYLPLRGDQRLEDA-------------------- 196 (819)
T ss_pred CCceEEEEeCCCCHHHH---HHHcCC--CcEEEecCc-ceeee--eEEeecchhhhHHHH--------------------
Confidence 47899999999986643 333321 111111100 00111 000000000000000
Q ss_pred cccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCcc
Q 005742 409 AIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDR 488 (679)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (679)
T Consensus 197 -------------------------------------------------------------------------------- 196 (819)
T TIGR01970 197 -------------------------------------------------------------------------------- 196 (819)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHhCCCeeE
Q 005742 489 SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565 (679)
Q Consensus 489 ~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~v 565 (679)
....+...+.+ ..+.+|||++++++++.+++.|.+ .++.+..+||+|++++|.++++.|++|+.+|
T Consensus 197 ---------v~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkV 265 (819)
T TIGR01970 197 ---------VSRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKV 265 (819)
T ss_pred ---------HHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEE
Confidence 00011112222 257899999999999999999987 4789999999999999999999999999999
Q ss_pred EEEecccccCcccccccEEEEeCCCCC------------------HHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 566 VVATIAFGMGIDKLNVRRIIHYGWPQS------------------LEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 566 LVaT~~~~~GiDip~v~~VI~~d~p~s------------------~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
||||+++++|||||+|++||++|+|.. ..+|+||+|||||. ++|.|+.||+..+..
T Consensus 266 lVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 266 VLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 999999999999999999999998752 35699999999999 899999999876543
No 71
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=311.67 Aligned_cols=337 Identities=23% Similarity=0.251 Sum_probs=251.9
Q ss_pred HhcCCCCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc-------------cCCeEEEEcCchHHHHHHHHH
Q 005742 167 KHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 167 ~~~g~~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~-------------~~~~vLvl~Pt~~L~~q~~~~ 232 (679)
..|+|..++.+|.+++|.+.+. .|+|+|||||+|||-+|++.++. .+-++++|+|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 4678999999999999999864 69999999999999999999873 256999999999999999988
Q ss_pred HHh----cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHH-HHhhcCceEEEeeccccccc-CCCCch
Q 005742 233 LSK----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR-LAESRGIALFAIDEVHCVSK-WGHDFR 306 (679)
Q Consensus 233 l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~-~~~~~~~~lvViDEaH~l~~-~g~~f~ 306 (679)
|.+ +|+.+..++|+..-...+. ..++|+|+|||++.-.-+...+ ..-++.+++|||||+|.+.+ +|...+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei----~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEI----ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHH----HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHH
Confidence 876 4899999998876655441 2479999999998643332221 22346799999999999975 888888
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCC-ceEEecccCCC-CcEEEEEecCCccchh
Q 005742 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG-TKFVLTSFFRP-NLRFSVKHSKTSSRAS 384 (679)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~-~~~~~~~~~r~-~~~~~v~~~~~~~~~~ 384 (679)
..+.+..++.+.-. ..+++|+||||+ .+..|+..||+.+.. ..+.....+|| ++...+...+......
T Consensus 260 tiVaRtlr~vessq--------s~IRivgLSATl--PN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~ 329 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQ--------SMIRIVGLSATL--PNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQ 329 (1230)
T ss_pred HHHHHHHHHHHhhh--------hheEEEEeeccC--CCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchh
Confidence 88888766654332 268899999999 688999999998632 23333344444 5555443322111000
Q ss_pred hhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
-.+.+.
T Consensus 330 ~~~~~d-------------------------------------------------------------------------- 335 (1230)
T KOG0952|consen 330 QKKNID-------------------------------------------------------------------------- 335 (1230)
T ss_pred hhhhHH--------------------------------------------------------------------------
Confidence 000000
Q ss_pred ccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC---------
Q 005742 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--------- 535 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--------- 535 (679)
....+++++.+.+ +.+++|||.+|..+...|+.|.+.
T Consensus 336 -------------------------------~~~~~kv~e~~~~---g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~ 381 (1230)
T KOG0952|consen 336 -------------------------------EVCYDKVVEFLQE---GHQVLVFVHSRNETIRTAKKLRERAETNGEKDL 381 (1230)
T ss_pred -------------------------------HHHHHHHHHHHHc---CCeEEEEEecChHHHHHHHHHHHHHHhcCcccc
Confidence 0122333444444 679999999999999999999871
Q ss_pred --------------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEE----EeCCCC------
Q 005742 536 --------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII----HYGWPQ------ 591 (679)
Q Consensus 536 --------------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI----~~d~p~------ 591 (679)
..+...+|+||..++|..+.+.|..|.++||+||..++.|+|+|+--++| .||...
T Consensus 382 f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dl 461 (1230)
T KOG0952|consen 382 FLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDL 461 (1230)
T ss_pred cCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeee
Confidence 13578899999999999999999999999999999999999999855554 344432
Q ss_pred CHHHHHHHhhccccC--CCCceEEEEecCCCCCccC
Q 005742 592 SLEAYYQEAGRAGRD--GHLADCVLYANLSSMPTLL 625 (679)
Q Consensus 592 s~~~y~Qr~GRagR~--G~~g~~~~l~~~~~~~~~~ 625 (679)
+.-+.+|..|||||. +..|.++++.+......++
T Consensus 462 gilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 462 GILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred hHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 467889999999995 4569999998877766654
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.6e-34 Score=311.33 Aligned_cols=321 Identities=17% Similarity=0.140 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcC-C---ceEEEcC
Q 005742 173 SLKNFQKEALSAWLA-H--HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG-V---TACFLGS 245 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-g--~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~-~---~~~~~~~ 245 (679)
.|||||.+|+.++.. | +.+++++|||+|||++.+..+...++++|||||+..|+.||.++|.++. + .+..+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 699999999999884 3 4789999999999999887777677899999999999999999999973 2 2333333
Q ss_pred CCCcHHHHHHHHcCCccEEEEChHHHHHHHH------HHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhh
Q 005742 246 GQPDNKVEQKALRGMYSIIYVCPETVIRLIK------PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319 (679)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~------~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~ 319 (679)
+... .......|+|+|++++..... .....+....|++||+||||++. .+.++++.. .+
T Consensus 335 ~~k~------~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp------A~~fr~il~---~l 399 (732)
T TIGR00603 335 DAKE------RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP------AAMFRRVLT---IV 399 (732)
T ss_pred Cccc------ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc------HHHHHHHHH---hc
Confidence 2211 112346899999998853211 01122333579999999999984 334444321 11
Q ss_pred ccccccccCCCCCEEEEEccCChhhHH--HHHHHcCCCCCceEEec--------ccCCCCcEEEEEecCCccchhhhHhH
Q 005742 320 GANNLKSLKFDIPLMALTATATIQVRE--DILKSLHMSKGTKFVLT--------SFFRPNLRFSVKHSKTSSRASYKKDF 389 (679)
Q Consensus 320 ~~~~~~~~~~~~~~l~lSAT~~~~~~~--~i~~~l~~~~~~~~~~~--------~~~r~~~~~~v~~~~~~~~~~~~~~~ 389 (679)
. ...+|+|||||...... ++...++ +.++.. .+.-+.-...+....
T Consensus 400 ~---------a~~RLGLTATP~ReD~~~~~L~~LiG----P~vye~~~~eLi~~G~LA~~~~~ev~v~~----------- 455 (732)
T TIGR00603 400 Q---------AHCKLGLTATLVREDDKITDLNFLIG----PKLYEANWMELQKKGFIANVQCAEVWCPM----------- 455 (732)
T ss_pred C---------cCcEEEEeecCcccCCchhhhhhhcC----CeeeecCHHHHHhCCccccceEEEEEecC-----------
Confidence 1 45689999999764321 1222221 111000 000000000010000
Q ss_pred HHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccc
Q 005742 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (679)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (679)
..+....|+....-..+.
T Consensus 456 --------------------------------------------------------------t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 456 --------------------------------------------------------------TPEFYREYLRENSRKRML 473 (732)
T ss_pred --------------------------------------------------------------CHHHHHHHHHhcchhhhH
Confidence 000111111111000000
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCH
Q 005742 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (679)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~ 548 (679)
. ......|...+..++..+ ..+.++||||.+...++.+++.| ++..+||++++
T Consensus 474 --------------------l-~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~ 527 (732)
T TIGR00603 474 --------------------L-YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQ 527 (732)
T ss_pred --------------------H-hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCH
Confidence 0 000112222222223222 24669999999999999999988 35678999999
Q ss_pred HHHHHHHHHHhCC-CeeEEEEecccccCcccccccEEEEeCCC-CCHHHHHHHhhccccCCCCceE-------EEEecCC
Q 005742 549 SQLRRVHTEFHEN-KLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGHLADC-------VLYANLS 619 (679)
Q Consensus 549 ~~R~~v~~~F~~g-~~~vLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~G~~g~~-------~~l~~~~ 619 (679)
.+|.+++++|++| .+++||+|+++++|||+|++++||+++.| .|...|+||+||++|.+..|.+ +.|++..
T Consensus 528 ~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 528 QERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 9999999999975 88999999999999999999999999988 5999999999999999877664 5666544
Q ss_pred C
Q 005742 620 S 620 (679)
Q Consensus 620 ~ 620 (679)
.
T Consensus 608 T 608 (732)
T TIGR00603 608 T 608 (732)
T ss_pred c
Confidence 3
No 73
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.4e-34 Score=301.54 Aligned_cols=399 Identities=16% Similarity=0.162 Sum_probs=274.8
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEeecCCcchhhh--hhhhh----ccCCeEEEEcCchHHHHHHHHHHHhc--CCc
Q 005742 172 SSLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCF--QIPAL----LTGKVVVVISPLISLMHDQCSKLSKH--GVT 239 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl~~--~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~ 239 (679)
..+++||.+.++|+. .|-|+|+..++|.|||+-. ++..+ ...+..||++|... ..+|.+++++| .+.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~St-L~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKST-LDNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhh-HHHHHHHHHHhCCCcc
Confidence 479999999999976 4679999999999999632 22222 13689999999755 58899999998 566
Q ss_pred eEEEcCCCCcHHHH-HHH-HcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHH
Q 005742 240 ACFLGSGQPDNKVE-QKA-LRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (679)
Q Consensus 240 ~~~~~~~~~~~~~~-~~~-~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~ 317 (679)
++.++|+...+... +.. ..+.++|+|+|++++++- ...+..-.|.++|||||||+.+.. ..|....+
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----k~~lk~~~W~ylvIDEaHRiKN~~-------s~L~~~lr 313 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----KSFLKKFNWRYLVIDEAHRIKNEK-------SKLSKILR 313 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----HHHHhcCCceEEEechhhhhcchh-------hHHHHHHH
Confidence 77777665433322 222 244789999999998763 345555689999999999997643 33444455
Q ss_pred hhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHh
Q 005742 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 397 (679)
.|. ....|++|+||.+++.+++|..|++.-+..+-....+..++..... .........++.+...+.
T Consensus 314 ~f~---------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~----~~~~e~v~~Lh~vL~pFl 380 (971)
T KOG0385|consen 314 EFK---------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC----EGDQELVSRLHKVLRPFL 380 (971)
T ss_pred Hhc---------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc----ccCHHHHHHHHhhhhHHH
Confidence 554 4568999999999999999999998766555443333333333211 111236677777777777
Q ss_pred hhccccccccccccccCCCc-------cCcCCCCcc-cccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccc
Q 005742 398 KKKKTGEKEKSAIPQDLDDQ-------SDTSSSSSM-SEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (679)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (679)
.++..........++..... ...++...+ ++.. ...+.....+.... .-+.+.+
T Consensus 381 LRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~-------------~~n~~~~~~k~kL~-----NI~mQLR 442 (971)
T KOG0385|consen 381 LRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLD-------------ALNGEGKGEKTKLQ-----NIMMQLR 442 (971)
T ss_pred HHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcch-------------hhcccccchhhHHH-----HHHHHHH
Confidence 77666554443332221111 111111000 0000 00000000010001 1123556
Q ss_pred cccccccCCCCCCCCCCccchhhccccC-c---hHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCC
Q 005742 470 VACGEFYGHSPHRDRDTDRSFERTDLLN-K---PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (679)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~ 545 (679)
.+|++.+.+....+.+.+...+...... | +++++..|.+. ++|+|||.+.....+.|.+++.-+++.++.++|.
T Consensus 443 KccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~--GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGS 520 (971)
T KOG0385|consen 443 KCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQ--GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGS 520 (971)
T ss_pred HhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhC--CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCC
Confidence 7788777777666555444444443333 3 34444444443 5699999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCC---CeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005742 546 LPKSQLRRVHTEFHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 546 ~~~~~R~~v~~~F~~g---~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
++.++|...++.|... ++-+|++|.+++.|||+...|+||.||..|+++.-+|.+.||+|.||...|.+|
T Consensus 521 t~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 521 TSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred CCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 9999999999999843 677899999999999999999999999999999999999999999999877765
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.6e-33 Score=306.92 Aligned_cols=380 Identities=18% Similarity=0.178 Sum_probs=243.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
+.++..+.+|. .|+++|..+++.+++|+ |+.+.||+|||++|.+|++ ..|+.++|++||+.||.|.++.+..+
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 44555567788 79999999999888776 9999999999999999997 47999999999999999999988774
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHH-H---HHHHhhcCceEEEeecccccc-c-------
Q 005742 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKP-L---QRLAESRGIALFAIDEVHCVS-K------- 300 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~-~---~~~~~~~~~~lvViDEaH~l~-~------- 300 (679)
|+.+..+.++....... +.. ..++|+|+||+++ .+++.. + .....++.+.++|+||||+++ +
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r-~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEK-KAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHH-HHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 88888888777633222 222 3489999999998 344432 1 122345789999999999983 1
Q ss_pred ---CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh--------------hh---HHHHHHHc----CCCC
Q 005742 301 ---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI--------------QV---REDILKSL----HMSK 356 (679)
Q Consensus 301 ---~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~--------------~~---~~~i~~~l----~~~~ 356 (679)
....-...|..+..+...+....--......+.+.||..-.. .. .+.+...| -+..
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 111122344444455444432100011222334445442111 00 00010111 0111
Q ss_pred Cc--------eEEeccc-CC--CCcEEE--------------E------------------EecCCccchhhhHhHHHHH
Q 005742 357 GT--------KFVLTSF-FR--PNLRFS--------------V------------------KHSKTSSRASYKKDFCQLI 393 (679)
Q Consensus 357 ~~--------~~~~~~~-~r--~~~~~~--------------v------------------~~~~~~~~~~~~~~~~~~~ 393 (679)
+. .++...+ .| +.-.|. + ...-....++....-.++.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 11 1111111 00 000000 0 0000011122233335566
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005742 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
..|...-...+............
T Consensus 382 ~~Y~l~v~~IPt~kp~~r~d~~~--------------------------------------------------------- 404 (790)
T PRK09200 382 EVYNMEVVQIPTNRPIIRIDYPD--------------------------------------------------------- 404 (790)
T ss_pred HHhCCcEEECCCCCCcccccCCC---------------------------------------------------------
Confidence 66666544332211111100000
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005742 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
. .......|...+++.+.+. ....++||||+|++.++.++..|.+.|+.+..+||++.++++.
T Consensus 405 ---------------~-i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~ 468 (790)
T PRK09200 405 ---------------K-VFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQ 468 (790)
T ss_pred ---------------e-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHH
Confidence 0 0011123445555555443 3466999999999999999999999999999999999999988
Q ss_pred HHHHHHhCCCeeEEEEecccccCccc---cccc-----EEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 553 RVHTEFHENKLEVVVATIAFGMGIDK---LNVR-----RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
.+...++.| .|+|||++++||+|| |.|. +||+|++|.|...|+||+|||||.|++|.++.|++..|
T Consensus 469 ~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 469 IIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 888888777 799999999999999 6998 99999999999999999999999999999999998654
No 75
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-32 Score=298.76 Aligned_cols=379 Identities=17% Similarity=0.139 Sum_probs=242.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
+.++..+.+|. .|+++|..+++.++.|+ |+.+.||+|||++|.+|++. .++.++||+||++|+.|.++.+.++
T Consensus 92 ~rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 44445556788 79999999999999998 99999999999999999985 5889999999999999999888773
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHHH-H----------------------HHHhhcCceE
Q 005742 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKPL-Q----------------------RLAESRGIAL 289 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~~-~----------------------~~~~~~~~~l 289 (679)
|+++..+.++.... +. .....++|+|+|...+. ++|... . ...-.+.+.+
T Consensus 169 ~~lGlsv~~i~gg~~~~--~r-~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 169 EALGLTVGCVVEDQSPD--ER-RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred hhcCCEEEEEeCCCCHH--HH-HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 88988888876432 22 23345899999998874 333311 0 1122356899
Q ss_pred EEeecccccc-cC--------C----CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHH---------
Q 005742 290 FAIDEVHCVS-KW--------G----HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRED--------- 347 (679)
Q Consensus 290 vViDEaH~l~-~~--------g----~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~--------- 347 (679)
.||||||.++ +. | ......|..+..+...+....--......+.+.||..-.......
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999873 11 1 111345666666655544321111223455666663321111110
Q ss_pred --------HHHHc----CCCCCc--------eEEeccc-CC--CCcEEE-------------------------------
Q 005742 348 --------ILKSL----HMSKGT--------KFVLTSF-FR--PNLRFS------------------------------- 373 (679)
Q Consensus 348 --------i~~~l----~~~~~~--------~~~~~~~-~r--~~~~~~------------------------------- 373 (679)
+...| -+..+. ..+...+ -| +.-.|.
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 00000 011110 1111111 00 000000
Q ss_pred -EEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCC
Q 005742 374 -VKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMG 452 (679)
Q Consensus 374 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (679)
....-....++......++...|.......+.........
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~--------------------------------------- 446 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRH--------------------------------------- 446 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcccee---------------------------------------
Confidence 0001111224444556777777766643322111110000
Q ss_pred cchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHH
Q 005742 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKY 531 (679)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~ 531 (679)
...++ ......|...+.+.+.+.. ...++||||+|++.++.+++.
T Consensus 447 ---~~~~v-------------------------------~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~ 492 (656)
T PRK12898 447 ---LPDEV-------------------------------FLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSAL 492 (656)
T ss_pred ---cCCEE-------------------------------EeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHH
Confidence 00000 0111234455555554432 245899999999999999999
Q ss_pred HHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccc---ccc-----EEEEeCCCCCHHHHHHHhhcc
Q 005742 532 LCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL---NVR-----RIIHYGWPQSLEAYYQEAGRA 603 (679)
Q Consensus 532 L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRa 603 (679)
|.+.|+.+..+||++.+ |+..+..|+.+...|+|||++++||+||+ +|. +||+|++|.|...|+||+|||
T Consensus 493 L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRT 570 (656)
T PRK12898 493 LREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRC 570 (656)
T ss_pred HHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccc
Confidence 99999999999998654 55555556666667999999999999999 676 999999999999999999999
Q ss_pred ccCCCCceEEEEecCCC
Q 005742 604 GRDGHLADCVLYANLSS 620 (679)
Q Consensus 604 gR~G~~g~~~~l~~~~~ 620 (679)
||.|++|.+++|++..|
T Consensus 571 GRqG~~G~s~~~is~eD 587 (656)
T PRK12898 571 GRQGDPGSYEAILSLED 587 (656)
T ss_pred cCCCCCeEEEEEechhH
Confidence 99999999999998765
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3e-33 Score=317.26 Aligned_cols=410 Identities=13% Similarity=0.138 Sum_probs=234.4
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhh---c--cCCeEEEEcCchHHHHHHHHHHH-hcCCceEEEc
Q 005742 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPAL---L--TGKVVVVISPLISLMHDQCSKLS-KHGVTACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l---~--~~~~vLvl~Pt~~L~~q~~~~l~-~~~~~~~~~~ 244 (679)
.|.|||.+++..++.. ..+|+..++|.|||+-+.+.+. . ...++|||||. .|+.||..++. ++++...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5999999998887653 4799999999999987765553 2 34699999997 89999999995 4677665554
Q ss_pred CCCCcHHH-HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 245 SGQPDNKV-EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
++...... .........+++|+|.+.+...-.. ...+.-..|++||+||||++......-...|..+..+...
T Consensus 231 ~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~-~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~----- 304 (956)
T PRK04914 231 EERYAEAQHDADNPFETEQLVICSLDFLRRNKQR-LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV----- 304 (956)
T ss_pred CcchhhhcccccCccccCcEEEEEHHHhhhCHHH-HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc-----
Confidence 33211100 0001112368999999987642221 1223345899999999999963111112335555444322
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCC-cEEEE-----E--ecCCccchhhhHhHHHHHHH
Q 005742 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPN-LRFSV-----K--HSKTSSRASYKKDFCQLIDI 395 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~-~~~~v-----~--~~~~~~~~~~~~~~~~~~~~ 395 (679)
...+++|||||.++...+++..|.+..+..+.....+... -.+.. . .............+..++.
T Consensus 305 ------~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~- 377 (956)
T PRK04914 305 ------IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG- 377 (956)
T ss_pred ------cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc-
Confidence 3469999999999999999999887655443221111100 00000 0 0000000000000100000
Q ss_pred HhhhccccccccccccccCCCccCcCC--CC-c---ccccc-------cCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005742 396 YTKKKKTGEKEKSAIPQDLDDQSDTSS--SS-S---MSEES-------RISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
.. ..... ...+........ .. . +.+.. +..-..... ++.......+ .++..+|...
T Consensus 378 --~~-----~~~~l-~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~--l~~~~~y~~~ 446 (956)
T PRK04914 378 --EQ-----DIEPL-LQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIP--LPLPEQYQTA 446 (956)
T ss_pred --cc-----chhHH-HhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEee--cCCCHHHHHH
Confidence 00 00000 000000000000 00 0 00000 000000000 0000000000 0000011000
Q ss_pred ---CCccccccccccccCCCCCCCCCCcc----chhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHH-h
Q 005742 463 ---DSVDDWDVACGEFYGHSPHRDRDTDR----SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC-G 534 (679)
Q Consensus 463 ---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~-~ 534 (679)
....... ..++ + ..... ...-.....|...+.+.|... ...++||||+++..+..+++.|. .
T Consensus 447 ~~~~~~~~~~---~~l~-----p-e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~ 516 (956)
T PRK04914 447 IKVSLEARAR---DMLY-----P-EQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALRER 516 (956)
T ss_pred HHHhHHHHHH---hhcC-----H-HHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhc
Confidence 0000000 0000 0 00000 000112234555666666554 36799999999999999999994 6
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhCC--CeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceE
Q 005742 535 FGVKAAAYNASLPKSQLRRVHTEFHEN--KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612 (679)
Q Consensus 535 ~~~~~~~~hg~~~~~~R~~v~~~F~~g--~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~ 612 (679)
.|+.+..+||+|++.+|+++++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|+||+||+||.|+.+.+
T Consensus 517 ~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 517 EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceE
Confidence 799999999999999999999999974 699999999999999999999999999999999999999999999999988
Q ss_pred EEEec
Q 005742 613 VLYAN 617 (679)
Q Consensus 613 ~~l~~ 617 (679)
.+++.
T Consensus 597 ~i~~~ 601 (956)
T PRK04914 597 QIHVP 601 (956)
T ss_pred EEEEc
Confidence 77764
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.2e-31 Score=293.93 Aligned_cols=381 Identities=18% Similarity=0.158 Sum_probs=233.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
++++..+.+|. +|||.+++..+..++..|+.++||+|||++|.+|++. .++.++||+|+++|+.|+++++..
T Consensus 59 vrEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 59 VREADKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred HHHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHH
Confidence 33444445554 5555556665555555799999999999999999874 678899999999999999998855
Q ss_pred --cCCceEEEcCCCCc--HHHHHHHHcCCccEEEEChHHH-HHHHHHH----HHHHhhcCceEEEeeccccccc-C----
Q 005742 236 --HGVTACFLGSGQPD--NKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVSK-W---- 301 (679)
Q Consensus 236 --~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~----~~~~~~~~~~lvViDEaH~l~~-~---- 301 (679)
+|+.+....++... ...+.+.....++|+|+||+++ .+++... .....++.+.++|+||||.++- .
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartp 215 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTP 215 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCC
Confidence 48887766554221 1111222224689999999999 3544321 1123467899999999999832 1
Q ss_pred ----CC--CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHH---------------------HHHHHcCC
Q 005742 302 ----GH--DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRE---------------------DILKSLHM 354 (679)
Q Consensus 302 ----g~--~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~---------------------~i~~~l~~ 354 (679)
|. .-...|..+..+...+....--......+.+.||-.-...... .+....-+
T Consensus 216 liisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~ 295 (762)
T TIGR03714 216 LVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLF 295 (762)
T ss_pred eeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHH
Confidence 11 1123445554454444321000111223445555321111000 00000001
Q ss_pred CCC--------ceEEeccc-CC--CCcEEE--------------------------------EEecCCccchhhhHhHHH
Q 005742 355 SKG--------TKFVLTSF-FR--PNLRFS--------------------------------VKHSKTSSRASYKKDFCQ 391 (679)
Q Consensus 355 ~~~--------~~~~~~~~-~r--~~~~~~--------------------------------v~~~~~~~~~~~~~~~~~ 391 (679)
..+ ..++...+ -| +.-+|. ....-....++....-.+
T Consensus 296 ~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~E 375 (762)
T TIGR03714 296 KRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKE 375 (762)
T ss_pred hcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHH
Confidence 110 01111111 00 000000 001111112233334455
Q ss_pred HHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccc
Q 005742 392 LIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVA 471 (679)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (679)
+...|...-...+........+...
T Consensus 376 f~~iY~l~v~~IPt~kp~~r~d~~d------------------------------------------------------- 400 (762)
T TIGR03714 376 FIETYSLSVVKIPTNKPIIRIDYPD------------------------------------------------------- 400 (762)
T ss_pred HHHHhCCCEEEcCCCCCeeeeeCCC-------------------------------------------------------
Confidence 5666766644333221111110000
Q ss_pred cccccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHH
Q 005742 472 CGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQ 550 (679)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~ 550 (679)
........|...+++.+.+. ....++||||++++.++.++..|.+.|+.+..+||++.+++
T Consensus 401 ------------------~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 401 ------------------KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred ------------------eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 00011123455555555543 33569999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeEEEEecccccCcccc---------cccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 551 LRRVHTEFHENKLEVVVATIAFGMGIDKL---------NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 551 R~~v~~~F~~g~~~vLVaT~~~~~GiDip---------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
+..+..+++.| .|+|||++++||+||+ .+.+|++|++|....+ +||+|||||.|.+|.+++|++..|
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 88888877777 7999999999999999 9999999999988777 999999999999999999998765
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.8e-31 Score=290.59 Aligned_cols=375 Identities=18% Similarity=0.165 Sum_probs=242.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++++..+.+|. .|+++|..+...+++|+ |+.++||+|||++|.+|++ ..+..++|++||..||.|.++++.++
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 44555567787 79999999988887776 9999999999999999985 36788999999999999999988774
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHH----HHHHhhcCceEEEeeccccccc--------
Q 005742 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVSK-------- 300 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~----~~~~~~~~~~lvViDEaH~l~~-------- 300 (679)
|+++..+.++..... .... -.++|+|+||.++ .+++... .....++.+.++||||+|+++-
T Consensus 122 ~~LGLsv~~i~g~~~~~~-r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEE-RREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred ccCCCeEEEEeCCCCHHH-HHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 788888877766432 2222 2479999999999 6666521 1235678899999999999842
Q ss_pred -CCC--CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC------------------------
Q 005742 301 -WGH--DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH------------------------ 353 (679)
Q Consensus 301 -~g~--~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~------------------------ 353 (679)
.|. .-...|.....+.+.+..+.-.......+.+.||.--. ..+...++
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~----~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGI----KKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHH----HHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 111 11122333333333322110011112233444443210 11111111
Q ss_pred -CCCCc--------eEEeccc-CC--CCcEEE--------------------------------EEecCCccchhhhHhH
Q 005742 354 -MSKGT--------KFVLTSF-FR--PNLRFS--------------------------------VKHSKTSSRASYKKDF 389 (679)
Q Consensus 354 -~~~~~--------~~~~~~~-~r--~~~~~~--------------------------------v~~~~~~~~~~~~~~~ 389 (679)
+..+. .++...+ -| +.-+|. ....-.....+....-
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 11110 1111110 00 000000 0001111123334455
Q ss_pred HHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccc
Q 005742 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (679)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (679)
.++...|...-...+............
T Consensus 355 ~E~~~iY~l~vv~IPtnkp~~R~d~~d----------------------------------------------------- 381 (745)
T TIGR00963 355 EEFEKIYNLEVVVVPTNRPVIRKDLSD----------------------------------------------------- 381 (745)
T ss_pred HHHHHHhCCCEEEeCCCCCeeeeeCCC-----------------------------------------------------
Confidence 667777766644433222111110000
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCH
Q 005742 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (679)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~ 548 (679)
.+ ......|...+++.+.+. ..+.++||||+++..++.+++.|.+.|+....+||+ +
T Consensus 382 -------------------~i-~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 382 -------------------LV-YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred -------------------eE-EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 00 000112333444444332 235699999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHhCCCeeEEEEecccccCccccc-------ccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLN-------VRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 549 ~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~-------v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|++|||||.|.+|.+..|++..|
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 89999999999999999999999999999998 5599999999999999999999999999999999998775
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.2e-31 Score=313.55 Aligned_cols=299 Identities=22% Similarity=0.283 Sum_probs=195.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHH
Q 005742 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLS 234 (679)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~ 234 (679)
.++...+.+..|+ +|+++|+.+++.++.|+|++++||||+|||+ |.+|+. ..++++|||+||++|+.|+.+.+.
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3455555555565 7999999999999999999999999999997 555553 257899999999999999999998
Q ss_pred hc----CCceE---EEcCCCCcHHH---HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCC-
Q 005742 235 KH----GVTAC---FLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH- 303 (679)
Q Consensus 235 ~~----~~~~~---~~~~~~~~~~~---~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~- 303 (679)
++ ++... .++|+.+.... ......+.++|+|+||+++.+.+..+ .. +++++|+||||++++++.
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l----~~-~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL----GP-KFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh----cC-CCCEEEEeChHhhhhcccc
Confidence 85 33333 24455444322 12223456999999999987655421 11 799999999999987321
Q ss_pred --------CchHH-HHHHHHHHHhh---------c--cccccccCCCCC--EEEEEccC-ChhhHHHHHHHcCCCCCceE
Q 005742 304 --------DFRPD-YRRLSVLRENF---------G--ANNLKSLKFDIP--LMALTATA-TIQVREDILKSLHMSKGTKF 360 (679)
Q Consensus 304 --------~f~~~-~~~l~~~~~~~---------~--~~~~~~~~~~~~--~l~lSAT~-~~~~~~~i~~~l~~~~~~~~ 360 (679)
.|.+. +..+..+...- . ...++..+...| ++++|||+ +..+...++..
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~--------- 288 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRE--------- 288 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccc---------
Confidence 16553 33322111000 0 000112233444 56789994 44433222111
Q ss_pred EecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCC
Q 005742 361 VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (679)
Q Consensus 361 ~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (679)
.+.+.+...... +.+
T Consensus 289 --------ll~~~v~~~~~~--------~r~------------------------------------------------- 303 (1171)
T TIGR01054 289 --------LLGFEVGGGSDT--------LRN------------------------------------------------- 303 (1171)
T ss_pred --------ccceEecCcccc--------ccc-------------------------------------------------
Confidence 111111000000 000
Q ss_pred CCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeC
Q 005742 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVP 520 (679)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~ 520 (679)
+.++.+ ....+...+.+++... ..++||||+
T Consensus 304 ------------------------I~~~~~-----------------------~~~~~~~~L~~ll~~l--~~~~IVFv~ 334 (1171)
T TIGR01054 304 ------------------------VVDVYV-----------------------EDEDLKETLLEIVKKL--GTGGIVYVS 334 (1171)
T ss_pred ------------------------eEEEEE-----------------------ecccHHHHHHHHHHHc--CCCEEEEEe
Confidence 000000 0000112233333332 357999999
Q ss_pred ch---hHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEe----cccccCccccc-ccEEEEeCCCC
Q 005742 521 TR---KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT----IAFGMGIDKLN-VRRIIHYGWPQ 591 (679)
Q Consensus 521 t~---~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT----~~~~~GiDip~-v~~VI~~d~p~ 591 (679)
++ +.++.+++.|...|+++..+||++++ .++++|++|+++||||| ++++||||+|+ |++|||||+|.
T Consensus 335 t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 335 IDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99 99999999999999999999999973 68999999999999995 99999999999 89999999995
No 80
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-31 Score=286.52 Aligned_cols=337 Identities=20% Similarity=0.245 Sum_probs=220.2
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCc--eEEEcCC
Q 005742 173 SLKNFQKEALSAWLA----HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT--ACFLGSG 246 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~----g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~--~~~~~~~ 246 (679)
.|++||++|+.++.+ ++..++++|||+|||++++..+...+..+|||||+++|+.||.+.+.++... .....++
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~ 115 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGG 115 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecC
Confidence 699999999999998 8899999999999999998888877777999999999999999888776433 2333333
Q ss_pred CCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccc
Q 005742 247 QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326 (679)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~ 326 (679)
.... ... ..|+|+|.+++..... ......+.+++||+||||++. .+.++.+......
T Consensus 116 ~~~~------~~~-~~i~vat~qtl~~~~~--l~~~~~~~~~liI~DE~Hh~~------a~~~~~~~~~~~~-------- 172 (442)
T COG1061 116 GEKE------LEP-AKVTVATVQTLARRQL--LDEFLGNEFGLIIFDEVHHLP------APSYRRILELLSA-------- 172 (442)
T ss_pred ceec------cCC-CcEEEEEhHHHhhhhh--hhhhcccccCEEEEEccccCC------cHHHHHHHHhhhc--------
Confidence 3221 111 3699999999976321 123334479999999999985 4455555444322
Q ss_pred cCCCCCEEEEEccCChhh---HHHHHHHcCCCCCceE-----EecccCCCCcEEEEEecCCc-cchhhhHhHHHHHHHHh
Q 005742 327 LKFDIPLMALTATATIQV---REDILKSLHMSKGTKF-----VLTSFFRPNLRFSVKHSKTS-SRASYKKDFCQLIDIYT 397 (679)
Q Consensus 327 ~~~~~~~l~lSAT~~~~~---~~~i~~~l~~~~~~~~-----~~~~~~r~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~ 397 (679)
..++|+|||||.... ..++...++ +....+ +...+..|...+.+...... ....+.+..........
T Consensus 173 ---~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 173 ---AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred ---ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 222899999987543 233344443 000000 11123333333333321111 11111111111000000
Q ss_pred hhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccC
Q 005742 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYG 477 (679)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (679)
.... ....+
T Consensus 249 ~~~~--------------------------------------------------------~~~~~--------------- 257 (442)
T COG1061 249 ARGT--------------------------------------------------------LRAEN--------------- 257 (442)
T ss_pred hhhh--------------------------------------------------------hhHHH---------------
Confidence 0000 00000
Q ss_pred CCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 005742 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557 (679)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~ 557 (679)
...........+...+...+.......+++||+.++.+++.++..+...+. +..+.|..+..+|..+++.
T Consensus 258 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 258 ---------EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred ---------HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 000001111123333333333333456999999999999999999998888 8999999999999999999
Q ss_pred HhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhcccc--CCCCceEEEEec
Q 005742 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR--DGHLADCVLYAN 617 (679)
Q Consensus 558 F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR--~G~~g~~~~l~~ 617 (679)
|+.|.+++||++.++.+|+|+|+++++|......|...|+||+||.-| .|+....++++.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999999999 333333344443
No 81
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.3e-32 Score=309.64 Aligned_cols=400 Identities=13% Similarity=0.140 Sum_probs=243.7
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEeecCCcchhhhhhhh--hc----cCCeEEEEcCchHHHHHHHHHHHhcC--Cce
Q 005742 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPA--LL----TGKVVVVISPLISLMHDQCSKLSKHG--VTA 240 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl~~~lp~--l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~--~~~ 240 (679)
+|++||.+++.+++ .|.++|++.++|.|||+..+..+ +. ..+.+|||||. +|+.||.+++.++. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 79999999999986 47789999999999998654332 21 24689999996 78899999999973 344
Q ss_pred EEEcCCCCcHHHHH--HHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 241 CFLGSGQPDNKVEQ--KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
+.+.+......... ....+.++|+|+|++++..... .+....|++|||||||++.+.. . .+......
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~----~L~k~~W~~VIvDEAHrIKN~~----S---klskalr~ 316 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT----ALKRFSWRYIIIDEAHRIKNEN----S---LLSKTMRL 316 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH----HhccCCCCEEEEcCccccCCHH----H---HHHHHHHH
Confidence 44444332222111 1223568999999998875332 3334579999999999996532 1 12222222
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhh
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 398 (679)
+. ...+++|||||.++...+++..|++..+..+-....+...+.. ............++.++..+..
T Consensus 317 L~---------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~----~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 317 FS---------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQI----SGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred hh---------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcc----ccccchHHHHHHHHHHhhHHHh
Confidence 22 4568999999999999999999987654332221111111111 0111112334556666665555
Q ss_pred hcccccccccc-------ccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccc
Q 005742 399 KKKTGEKEKSA-------IPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVA 471 (679)
Q Consensus 399 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (679)
++........+ +...+...........+..... ....+. ....... .+.+....
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~-----------~l~~g~---~~~~Lln-----ilmqLRk~ 444 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLD-----------VVNAGG---ERKRLLN-----IAMQLRKC 444 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHH-----------HHhccc---cHHHHHH-----HHHHHHHH
Confidence 44433221111 1001110000000000000000 000000 0000000 01112223
Q ss_pred cccccCCCCCCCCCCccc-hhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHH
Q 005742 472 CGEFYGHSPHRDRDTDRS-FERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549 (679)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~ 549 (679)
|.+.+............. ......+.|...+..+|.... .+.++|||++.....+.|.++|...++.++.+||+++.+
T Consensus 445 cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~ 524 (1033)
T PLN03142 445 CNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGE 524 (1033)
T ss_pred hCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 333222211111111111 111223344444444443332 255999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC---CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 550 QLRRVHTEFHE---NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 550 ~R~~v~~~F~~---g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+|+.+++.|.. +...+|++|.+++.|||+..+++||+||++||+..+.|++||++|.||...|.+|.
T Consensus 525 eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 525 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred HHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999975 34568999999999999999999999999999999999999999999998776653
No 82
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=267.69 Aligned_cols=318 Identities=14% Similarity=0.167 Sum_probs=202.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhcC-------CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhc
Q 005742 213 GKVVVVISPLISLMHDQCSKLSKHG-------VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (679)
Q Consensus 213 ~~~vLvl~Pt~~L~~q~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~ 285 (679)
.+.+||+-|.++|++|....+.+|. ++...+.+|... +.+.+.+..+.+|+|+||+++..++. .+.+.+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~-r~Q~~ql~~g~~ivvGtpgRl~~~is--~g~~~lt 362 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLK-RTQCKQLKDGTHIVVGTPGRLLQPIS--KGLVTLT 362 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHh-HHHHHHhhcCceeeecCchhhhhhhh--ccceeee
Confidence 4589999999999999998666642 233344444433 34566677789999999999999888 7888889
Q ss_pred CceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHH-HHHcCCCCCceEEecc
Q 005742 286 GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDI-LKSLHMSKGTKFVLTS 364 (679)
Q Consensus 286 ~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i-~~~l~~~~~~~~~~~~ 364 (679)
..+++|+|||+-++..| +...+.++-.-+.. +..-....|.+..|||+..-....+ .+.++++.-...-...
T Consensus 363 ~crFlvlDead~lL~qg--y~d~I~r~h~qip~-----~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD 435 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQG--YDDKIYRFHGQIPH-----MTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED 435 (725)
T ss_pred eeEEEEecchhhhhhcc--cHHHHHHHhccchh-----hhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc
Confidence 99999999999998877 44444443221111 1112236789999999865222111 1223332211111111
Q ss_pred cCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCc
Q 005742 365 FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE 444 (679)
Q Consensus 365 ~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (679)
.........+.....+. .....++++.+..-.. ...++..+.
T Consensus 436 ~vpetvHhvv~lv~p~~-d~sw~~lr~~i~td~v-------------------------------------h~kdn~~pg 477 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSV-DGSWCDLRQFIETDKV-------------------------------------HTKDNLLPG 477 (725)
T ss_pred ccchhhccceeecCCcc-CccHHHHhhhhccCCc-------------------------------------ccccccccc
Confidence 11222222222211111 1112222222211000 000000000
Q ss_pred cCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhH
Q 005742 445 DVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKE 524 (679)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~ 524 (679)
. .+.++ -......+. -+.-+..+.+ ....++||||.|+..
T Consensus 478 ~-~Spe~-~s~a~kilk-------------------------------------gEy~v~ai~~-h~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 478 Q-VSPEN-PSSATKILK-------------------------------------GEYGVVAIRR-HAMDKAIIFCRTKQD 517 (725)
T ss_pred c-CCCCC-hhhhhHHhc-------------------------------------Cchhhhhhhh-hccCceEEEEecccc
Confidence 0 00000 000000000 0011112222 236799999999999
Q ss_pred HHHHHHHHHhCC---CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhh
Q 005742 525 TLSIAKYLCGFG---VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601 (679)
Q Consensus 525 ~~~l~~~L~~~~---~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~G 601 (679)
|+.|.+++.+.| +.+.++||+..+.+|.+-++.|+.+.+++||||++++|||||..+-++|+..+|.+...|+||+|
T Consensus 518 cDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrig 597 (725)
T KOG0349|consen 518 CDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIG 597 (725)
T ss_pred chHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhh
Confidence 999999999864 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEEecC
Q 005742 602 RAGRDGHLADCVLYANL 618 (679)
Q Consensus 602 RagR~G~~g~~~~l~~~ 618 (679)
|+||+.+-|.++.++..
T Consensus 598 rvgraermglaislvat 614 (725)
T KOG0349|consen 598 RVGRAERMGLAISLVAT 614 (725)
T ss_pred ccchhhhcceeEEEeec
Confidence 99999999999988753
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=1.8e-30 Score=291.60 Aligned_cols=372 Identities=18% Similarity=0.165 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHh-cCCceEEEcC
Q 005742 173 SLKNFQKEALSAWLAH---HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGS 245 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g---~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~~~ 245 (679)
.|+++|+++++.++++ +++++.++||+|||.+|+.++. ..++++|||+|+++|+.|+.+.|++ ++..+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6899999999999874 7899999999999999987653 4688999999999999999999987 5888888887
Q ss_pred CCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC-chHHHHHHHHHHHhhcc
Q 005742 246 GQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD-FRPDYRRLSVLRENFGA 321 (679)
Q Consensus 246 ~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~-f~~~~~~l~~~~~~~~~ 321 (679)
+.+... .+.+...+.++|+|+|++.+. ..+.++++|||||+|...-++.. .....+.+..++....
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~- 293 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE- 293 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc-
Confidence 766543 233445567899999998553 34678999999999988644322 1222345544444332
Q ss_pred ccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCc----cchhhhHhHHHHHHHH
Q 005742 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTS----SRASYKKDFCQLIDIY 396 (679)
Q Consensus 322 ~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~----~~~~~~~~~~~~~~~~ 396 (679)
+.+++++||||+......+..-- + ....+...+.+. ...+.+...... ....+...+.+.+...
T Consensus 294 --------~~~~il~SATps~~s~~~~~~g~-~--~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 294 --------NIPVVLGSATPSLESLANAQQGR-Y--RLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred --------CCCEEEEcCCCCHHHHHHHhccc-e--eEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 78999999999877665442100 0 000011111111 111222211100 0001112222211111
Q ss_pred hhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccccccc
Q 005742 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFY 476 (679)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (679)
. ..+.....++ +.-.. ...-....|+...
T Consensus 363 l---~~g~qvll~~-nrrGy-----------------------------------------------~~~~~C~~Cg~~~ 391 (679)
T PRK05580 363 L---ERGEQVLLFL-NRRGY-----------------------------------------------APFLLCRDCGWVA 391 (679)
T ss_pred H---HcCCeEEEEE-cCCCC-----------------------------------------------CCceEhhhCcCcc
Confidence 1 0000000000 00000 0000112233333
Q ss_pred CCCCCCCCCCccchhhccccCchHHHhhhccC----CCCCCcEEEEeCchhHHHHHHHHHHhC--CCcEEEecCCCC--H
Q 005742 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQE----PLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLP--K 548 (679)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~~hg~~~--~ 548 (679)
..+.|......... ...+.....-... .-+.-.-..|......++.+++.|.+. +.++..+|+++. +
T Consensus 392 ~C~~C~~~l~~h~~-----~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 392 ECPHCDASLTLHRF-----QRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCCCCCceeEECC-----CCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 22333311111000 0000000000000 000001123555566888999999886 789999999986 4
Q ss_pred HHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC--CC----------HHHHHHHhhccccCCCCceEEEEe
Q 005742 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP--QS----------LEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 549 ~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p--~s----------~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
++++.++++|++|+.+|||+|+++++|+|+|+|++|+.+|.+ -+ .+.|+|++||+||.++.|.+++..
T Consensus 467 ~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 467 GALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred hhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 679999999999999999999999999999999999766554 22 367999999999999999999877
Q ss_pred cCCCC
Q 005742 617 NLSSM 621 (679)
Q Consensus 617 ~~~~~ 621 (679)
...+.
T Consensus 547 ~~p~~ 551 (679)
T PRK05580 547 YHPEH 551 (679)
T ss_pred CCCCC
Confidence 55443
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=4.3e-30 Score=286.41 Aligned_cols=337 Identities=17% Similarity=0.179 Sum_probs=252.3
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----C--CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHH
Q 005742 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLA----H--HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMH 227 (679)
Q Consensus 157 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~----g--~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~ 227 (679)
........+...|+| .-|+-|..||..+++ + +|-++|+..|.|||-+++-+++ ..|+.|.|||||.-|++
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~ 657 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQ 657 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHH
Confidence 333444555667788 689999999999884 2 5899999999999999887665 58999999999999999
Q ss_pred HHHHHHHh----cCCceEEEcCCCCc---HHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 228 DQCSKLSK----HGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 228 q~~~~l~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
|+++.|+. |++++..+.--.+. .........+..+|||+|..-| .+.+.+.+++++||||-||..-
T Consensus 658 QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-------~kdv~FkdLGLlIIDEEqRFGV 730 (1139)
T COG1197 658 QHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-------SKDVKFKDLGLLIIDEEQRFGV 730 (1139)
T ss_pred HHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-------CCCcEEecCCeEEEechhhcCc
Confidence 99998877 46666655433332 2233455578899999998533 3456688999999999999853
Q ss_pred CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCc
Q 005742 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380 (679)
Q Consensus 301 ~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~ 380 (679)
. -.+.++. ++.++.+|-|||||-+...+ +...|++.-..+...+..|-++...|......
T Consensus 731 k---~KEkLK~---------------Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~ 790 (1139)
T COG1197 731 K---HKEKLKE---------------LRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL 790 (1139)
T ss_pred c---HHHHHHH---------------HhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCChH
Confidence 1 1333333 33478899999999888776 55566655444444555565665554432211
Q ss_pred cchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhh
Q 005742 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (679)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (679)
.
T Consensus 791 ~------------------------------------------------------------------------------- 791 (1139)
T COG1197 791 L------------------------------------------------------------------------------- 791 (1139)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--CCc
Q 005742 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVK 538 (679)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~ 538 (679)
..-..+.+...+|++-..+|.++..+.+++.|++. ..+
T Consensus 792 ----------------------------------------ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEar 831 (1139)
T COG1197 792 ----------------------------------------IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEAR 831 (1139)
T ss_pred ----------------------------------------HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceE
Confidence 11122334445889999999999999999999985 667
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC-CCHHHHHHHhhccccCCCCceEEEEec
Q 005742 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 539 ~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
+...||.|+..+-+.++..|.+|+++|||||.+.+.|||||+++++|..+.. -.+.+.+|..||+||..+.+.|+++|.
T Consensus 832 I~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 832 IAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred EEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeec
Confidence 8999999999999999999999999999999999999999999999977765 358999999999999999999999997
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHHHHhc
Q 005742 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYG 648 (679)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (679)
+.+. ..+..++.+..++.+..++
T Consensus 912 ~~k~--------lT~~A~kRL~aI~~~~~LG 934 (1139)
T COG1197 912 PQKA--------LTEDAEKRLEAIASFTELG 934 (1139)
T ss_pred Cccc--------cCHHHHHHHHHHHhhhhcC
Confidence 5442 2334444445555544444
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=4.1e-30 Score=295.35 Aligned_cols=304 Identities=17% Similarity=0.177 Sum_probs=196.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc----cC--CeEEEEcCc----hHHHHHHHHHHHh-cCCceEEEcC
Q 005742 177 FQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TG--KVVVVISPL----ISLMHDQCSKLSK-HGVTACFLGS 245 (679)
Q Consensus 177 ~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~--~~vLvl~Pt----~~L~~q~~~~l~~-~~~~~~~~~~ 245 (679)
+-.+.+..+..++.++++++||||||. ++|.+. .+ +.+++.-|. ++|+.++.+++.. +|-.+.+-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 344555566666678889999999998 678542 12 355556674 5778888888875 3433221111
Q ss_pred CCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccc-ccccCCCCchHHHHHHHHHHHhhccccc
Q 005742 246 GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH-CVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH-~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
.. ......++|+|+||++|++.+. .. ..+.++++||||||| +.++.+ |... .+..+..
T Consensus 156 f~-------~~~s~~t~I~v~TpG~LL~~l~--~d-~~Ls~~~~IIIDEAHERsLn~D--fLLg--~Lk~lL~------- 214 (1294)
T PRK11131 156 FN-------DQVSDNTMVKLMTDGILLAEIQ--QD-RLLMQYDTIIIDEAHERSLNID--FILG--YLKELLP------- 214 (1294)
T ss_pred Cc-------cccCCCCCEEEEChHHHHHHHh--cC-CccccCcEEEecCccccccccc--hHHH--HHHHhhh-------
Confidence 00 1123468999999999998765 32 347899999999999 566544 5432 2222211
Q ss_pred cccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccc
Q 005742 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGE 404 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (679)
..++.|++++|||+... .+.+.++- ...+...... .++..............-.+.+..
T Consensus 215 --~rpdlKvILmSATid~e---~fs~~F~~--apvI~V~Gr~-~pVei~y~p~~~~~~~~~~d~l~~------------- 273 (1294)
T PRK11131 215 --RRPDLKVIITSATIDPE---RFSRHFNN--APIIEVSGRT-YPVEVRYRPIVEEADDTERDQLQA------------- 273 (1294)
T ss_pred --cCCCceEEEeeCCCCHH---HHHHHcCC--CCEEEEcCcc-ccceEEEeecccccchhhHHHHHH-------------
Confidence 12368999999999653 34444431 1112111110 111111000000000000000000
Q ss_pred cccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCC
Q 005742 405 KEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDR 484 (679)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 484 (679)
T Consensus 274 -------------------------------------------------------------------------------- 273 (1294)
T PRK11131 274 -------------------------------------------------------------------------------- 273 (1294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHHHhCC
Q 005742 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK---AAAYNASLPKSQLRRVHTEFHEN 561 (679)
Q Consensus 485 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~---~~~~hg~~~~~~R~~v~~~F~~g 561 (679)
....+..+. ....+.+|||++++.+++.+++.|...++. +..+||+|++++|..+++. .|
T Consensus 274 --------------ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g 336 (1294)
T PRK11131 274 --------------IFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS 336 (1294)
T ss_pred --------------HHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC
Confidence 000011111 123678999999999999999999987764 6789999999999999886 57
Q ss_pred CeeEEEEecccccCcccccccEEEEeCC---------------C---CCHHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 562 KLEVVVATIAFGMGIDKLNVRRIIHYGW---------------P---QSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 562 ~~~vLVaT~~~~~GiDip~v~~VI~~d~---------------p---~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
..+|||||+++++|||||+|++||++|. | .|..+|.||+|||||. ++|.|+.+|+..+..
T Consensus 337 ~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 337 GRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 8999999999999999999999999873 3 4568999999999999 799999999876543
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.9e-30 Score=270.76 Aligned_cols=319 Identities=19% Similarity=0.214 Sum_probs=231.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHH
Q 005742 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISL 225 (679)
Q Consensus 155 ~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g------~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L 225 (679)
..+...+...+.+.+.| +||..|+.++..|... .+-++++..|||||+++++.++ ..|..+..++||--|
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEIL 323 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEIL 323 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHH
Confidence 34444455555557788 7999999999999853 4679999999999998887776 478999999999999
Q ss_pred HHHHHHHHHhc----CCceEEEcCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 226 MHDQCSKLSKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 226 ~~q~~~~l~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
|.|+++.+.++ ++.+..+.+...... .......+..+|+|+|..-+ +..+.+.++.++|+||=||.
T Consensus 324 A~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-------Qd~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 324 AEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-------QDKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-------hcceeecceeEEEEeccccc
Confidence 99999988774 788888877655433 33455677899999998644 34566889999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHhhccccccccCC-CCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEec
Q 005742 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKF-DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377 (679)
Q Consensus 299 ~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~ 377 (679)
.-.. |..++ .... .+.+|.|||||-+.... +..++.-+-..+.--+.-|.++...+...
T Consensus 397 GV~Q---R~~L~---------------~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~ 456 (677)
T COG1200 397 GVHQ---RLALR---------------EKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPH 456 (677)
T ss_pred cHHH---HHHHH---------------HhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecc
Confidence 5211 11111 1122 46799999999776544 22333221122222233334443332221
Q ss_pred CCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhh
Q 005742 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (679)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (679)
T Consensus 457 -------------------------------------------------------------------------------- 456 (677)
T COG1200 457 -------------------------------------------------------------------------------- 456 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHH--------HHH
Q 005742 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKET--------LSI 528 (679)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~--------~~l 528 (679)
.+..++++.+.+.. .+.++.+.|+-+++. ..+
T Consensus 457 ---------------------------------------~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~ 497 (677)
T COG1200 457 ---------------------------------------ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEEL 497 (677)
T ss_pred ---------------------------------------ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHH
Confidence 12222233332222 245788888776644 455
Q ss_pred HHHHHhC--CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC-CCHHHHHHHhhcccc
Q 005742 529 AKYLCGF--GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGR 605 (679)
Q Consensus 529 ~~~L~~~--~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR 605 (679)
++.|... ++++..+||.|+.+++++++++|++|+++|||||.+.+.|||+|+.++.|.++.- -...+.-|-.||+||
T Consensus 498 ~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGR 577 (677)
T COG1200 498 YEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR 577 (677)
T ss_pred HHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCC
Confidence 6666642 6679999999999999999999999999999999999999999999999998875 468899999999999
Q ss_pred CCCCceEEEEecCCC
Q 005742 606 DGHLADCVLYANLSS 620 (679)
Q Consensus 606 ~G~~g~~~~l~~~~~ 620 (679)
.+..+.|++++.+..
T Consensus 578 G~~qSyC~Ll~~~~~ 592 (677)
T COG1200 578 GDLQSYCVLLYKPPL 592 (677)
T ss_pred CCcceEEEEEeCCCC
Confidence 999999999997544
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.3e-29 Score=267.33 Aligned_cols=374 Identities=18% Similarity=0.194 Sum_probs=245.0
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005742 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 167 ~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
..++| +|-.+|++||-.+.+|..++|.|+|.+|||+++..++. .++.++++.+|-++|-+|.++.|+..--.+..+
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLl 370 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLL 370 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcccccee
Confidence 35678 79999999999999999999999999999998876664 368899999999999999999999853344466
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCCCchHHHHHHHHHHHhhcc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGA 321 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~~~~~ 321 (679)
+|+.. +...+.++|+|.|.|.+++. ++.--.+++.+||+||+|.+.+ +|..|++.+
T Consensus 371 TGDvq--------inPeAsCLIMTTEILRsMLY--rgadliRDvE~VIFDEVHYiND~eRGvVWEEVi------------ 428 (1248)
T KOG0947|consen 371 TGDVQ--------INPEASCLIMTTEILRSMLY--RGADLIRDVEFVIFDEVHYINDVERGVVWEEVI------------ 428 (1248)
T ss_pred eccee--------eCCCcceEeehHHHHHHHHh--cccchhhccceEEEeeeeecccccccccceeee------------
Confidence 65543 34567899999999998887 5555578899999999999965 787666654
Q ss_pred ccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC--CcEEEEEecCCccchhhhHhHHHHHHHHhhh
Q 005742 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP--NLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399 (679)
Q Consensus 322 ~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (679)
-.+|+.+++++||||.+ +.-++..|+|-.+...+++.+..+. ++............ ...+.-..+..-+...
T Consensus 429 ---IMlP~HV~~IlLSATVP--N~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~k-iidq~g~fl~~~~~~a 502 (1248)
T KOG0947|consen 429 ---IMLPRHVNFILLSATVP--NTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFK-IIDQNGIFLLKGIKDA 502 (1248)
T ss_pred ---eeccccceEEEEeccCC--ChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceeh-hhcccchhhhhcchhh
Confidence 34567899999999995 5568899998777777766666444 34333332211110 0000000111111111
Q ss_pred ccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCc-cCCCCCCCcchhhhhhccCCccccccccccccCC
Q 005742 400 KKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE-DVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGH 478 (679)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (679)
.....+........ .... .....+. .......+... ..++ ...
T Consensus 503 ~~~~~~~ak~~~~~-~~~~-~~~rgs~-------~~ggk~~~~~g~~r~~-~~~-------------------------- 546 (1248)
T KOG0947|consen 503 KDSLKKEAKFVDVE-KSDA-RGGRGSQ-------KRGGKTNYHNGGSRGS-GIG-------------------------- 546 (1248)
T ss_pred hhhhcccccccccc-cccc-ccccccc-------ccCCcCCCCCCCcccc-ccc--------------------------
Confidence 00000000110000 0000 0000000 00000000000 0000 000
Q ss_pred CCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh------------------------
Q 005742 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------------------ 534 (679)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~------------------------ 534 (679)
..... .+....++..|.... .-++||||-+++.|++-+++|..
T Consensus 547 -----------~nrr~-~~~~l~lin~L~k~~-lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk 613 (1248)
T KOG0947|consen 547 -----------KNRRK-QPTWLDLINHLRKKN-LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLK 613 (1248)
T ss_pred -----------ccccc-cchHHHHHHHHhhcc-cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcC
Confidence 00000 012233444444431 44899999999999999999976
Q ss_pred ---------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC---------
Q 005742 535 ---------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP--------- 590 (679)
Q Consensus 535 ---------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p--------- 590 (679)
...+++.+||++-+--++-|.-.|..|-++||+||.++++|||.|. ++||+-.+.
T Consensus 614 ~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~ 692 (1248)
T KOG0947|consen 614 GEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRE 692 (1248)
T ss_pred hhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceee
Confidence 1235788999999999999999999999999999999999999998 555554443
Q ss_pred CCHHHHHHHhhccccCCC--CceEEEEecCC
Q 005742 591 QSLEAYYQEAGRAGRDGH--LADCVLYANLS 619 (679)
Q Consensus 591 ~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~ 619 (679)
-.+-+|.|++|||||.|- .|.+++++...
T Consensus 693 L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 693 LLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred cCChhHHhhhccccccccCcCceEEEEecCC
Confidence 247899999999999985 48888887654
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=283.01 Aligned_cols=335 Identities=23% Similarity=0.260 Sum_probs=250.2
Q ss_pred hcCCCCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc--------------cCCeEEEEcCchHHHHHHHHH
Q 005742 168 HFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL--------------TGKVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~--------------~~~~vLvl~Pt~~L~~q~~~~ 232 (679)
.+|..+++++|.....+++.+ .++++|||||+|||-++++-++. ...++++++|.++|++.|+..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 458888999999999999976 58999999999999999999984 244899999999999999987
Q ss_pred HHh----cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CCCCchH
Q 005742 233 LSK----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRP 307 (679)
Q Consensus 233 l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g~~f~~ 307 (679)
|.+ +|+.+...+++..-...+ ....+|+|+|||...-.-+.-....-.+-++++||||.|.+.+ +|+..+.
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQ----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhh----hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHH
Confidence 765 588988888776644332 2347999999998853333111112233489999999999954 8876666
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchhhh
Q 005742 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYK 386 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~ 386 (679)
...+...-.+. -...+++++||||+ .+..++..+|+...+..++..+.+|| ++...+.........
T Consensus 460 IVaRt~r~ses--------~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~--- 526 (1674)
T KOG0951|consen 460 IVARTFRRSES--------TEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL--- 526 (1674)
T ss_pred HHHHHHHHhhh--------cccCceeeeecccC--CchhhhHHHhccCcccccccCcccCcCCccceEeccccCCch---
Confidence 65555333221 12367899999999 57789999988877777777666666 665554432222110
Q ss_pred HhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcc
Q 005742 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (679)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (679)
+.++.+-
T Consensus 527 ~~~qamN------------------------------------------------------------------------- 533 (1674)
T KOG0951|consen 527 KRFQAMN------------------------------------------------------------------------- 533 (1674)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 0111111
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh------------
Q 005742 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------ 534 (679)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~------------ 534 (679)
+.-.+.+.++...+++|||+.+|+++-+.|++++.
T Consensus 534 ---------------------------------e~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fm 580 (1674)
T KOG0951|consen 534 ---------------------------------EACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFM 580 (1674)
T ss_pred ---------------------------------HHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHH
Confidence 11234444555568999999999999999998874
Q ss_pred -------------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEE----
Q 005742 535 -------------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII---- 585 (679)
Q Consensus 535 -------------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI---- 585 (679)
..++++.+|+||+..+|..+.+.|+.|.++|||+|-.+++|+|+|.-.++|
T Consensus 581 re~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtq 660 (1674)
T KOG0951|consen 581 REDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQ 660 (1674)
T ss_pred hcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCcc
Confidence 356789999999999999999999999999999999999999999866666
Q ss_pred EeCC------CCCHHHHHHHhhccccCC--CCceEEEEecCCCCCccC
Q 005742 586 HYGW------PQSLEAYYQEAGRAGRDG--HLADCVLYANLSSMPTLL 625 (679)
Q Consensus 586 ~~d~------p~s~~~y~Qr~GRagR~G--~~g~~~~l~~~~~~~~~~ 625 (679)
.||+ +.++.+.+||.|||||.+ +.|..++..+.++..+++
T Consensus 661 vy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyl 708 (1674)
T KOG0951|consen 661 VYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYL 708 (1674)
T ss_pred ccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhH
Confidence 4654 357899999999999965 457888887777766554
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.1e-29 Score=271.73 Aligned_cols=349 Identities=18% Similarity=0.204 Sum_probs=201.4
Q ss_pred EEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHh-cCCceEEEcCCCCcHH---HHHHHHcCCccEE
Q 005742 192 LVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNK---VEQKALRGMYSII 264 (679)
Q Consensus 192 iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~Il 264 (679)
++.++||||||.+|+..+ +..++++|||+|+++|+.|+.+.|++ ++..+..++++....+ .+.....+.++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 478999999999987544 35788999999999999999999987 5777888877765543 2334455678999
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCc-hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChh
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF-RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~ 343 (679)
|+|+..+. ..+.++++|||||+|...-++..+ +...+.+..++.... +.+++++||||+.+
T Consensus 81 VGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~---------~~~vil~SATPsle 142 (505)
T TIGR00595 81 IGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF---------NCPVVLGSATPSLE 142 (505)
T ss_pred ECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc---------CCCEEEEeCCCCHH
Confidence 99998552 246789999999999987554332 223345555555543 78999999999876
Q ss_pred hHHHHHHHcCCCCCceEEe--ccc-CCCCcEEEEEecCCcc-chhhhHhHHHHHHHHhhhccccccccccccccCCCccC
Q 005742 344 VREDILKSLHMSKGTKFVL--TSF-FRPNLRFSVKHSKTSS-RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSD 419 (679)
Q Consensus 344 ~~~~i~~~l~~~~~~~~~~--~~~-~r~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (679)
....+... ....+. ..+ .++.....+....... ...+...+.+.+.... ..+... .++.+.....
T Consensus 143 s~~~~~~g-----~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l---~~g~qv-LvflnrrGya-- 211 (505)
T TIGR00595 143 SYHNAKQK-----AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL---AAGEQS-ILFLNRRGYS-- 211 (505)
T ss_pred HHHHHhcC-----CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH---HcCCcE-EEEEeCCcCC--
Confidence 55443210 111100 001 1111122222111110 0111122222111111 000000 0000000000
Q ss_pred cCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCch
Q 005742 420 TSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKP 499 (679)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (679)
.--....|+.....+.|......... ...+
T Consensus 212 ---------------------------------------------~~~~C~~Cg~~~~C~~C~~~l~~h~~-----~~~l 241 (505)
T TIGR00595 212 ---------------------------------------------KNLLCRSCGYILCCPNCDVSLTYHKK-----EGKL 241 (505)
T ss_pred ---------------------------------------------CeeEhhhCcCccCCCCCCCceEEecC-----CCeE
Confidence 00011223333322233211111000 0000
Q ss_pred HHHhhhccCCCC------CCcEEEEeCchhHHHHHHHHHHhC--CCcEEEecCCCCHHHH--HHHHHHHhCCCeeEEEEe
Q 005742 500 AERLSMLQEPLE------DGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLPKSQL--RRVHTEFHENKLEVVVAT 569 (679)
Q Consensus 500 ~~ll~~l~~~~~------~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~R--~~v~~~F~~g~~~vLVaT 569 (679)
.....-.....+ ++..|.. ..-.++.+++.|.+. +.++..+|++++..++ +.++++|++|+.+|||+|
T Consensus 242 ~Ch~Cg~~~~~~~~Cp~C~s~~l~~--~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT 319 (505)
T TIGR00595 242 RCHYCGYQEPIPKTCPQCGSEDLVY--KGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGT 319 (505)
T ss_pred EcCCCcCcCCCCCCCCCCCCCeeEe--ecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeC
Confidence 000000000000 0011111 112467888888776 7889999999987665 899999999999999999
Q ss_pred cccccCcccccccEEEEeCCCC------------CHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005742 570 IAFGMGIDKLNVRRIIHYGWPQ------------SLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 570 ~~~~~GiDip~v~~VI~~d~p~------------s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
+++++|+|+|+|++|+..|... ..+.|+|++|||||.++.|.+++.....+.
T Consensus 320 ~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 320 QMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred cccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 9999999999999986555432 256799999999999999999976644443
No 90
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.97 E-value=8.2e-31 Score=287.77 Aligned_cols=410 Identities=14% Similarity=0.138 Sum_probs=267.8
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEeecCCcchh---hhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc-CCce
Q 005742 172 SSLKNFQKEALSAWL----AHHDCLVLAATGSGKSL---CFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH-GVTA 240 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl---~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~-~~~~ 240 (679)
.+||.||.+.++|++ .+.++|+..++|.|||+ +|+-.++ ...+..|||||.. -+..|.++|..+ .+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvpls-t~~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLS-TITAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehh-hhHHHHHHHHHHhhhce
Confidence 689999999999876 57899999999999995 4443333 3568899999984 466777788776 4555
Q ss_pred EEEcCCCCcHHHHHH--HH-cC-----CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHH
Q 005742 241 CFLGSGQPDNKVEQK--AL-RG-----MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 241 ~~~~~~~~~~~~~~~--~~-~~-----~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
+++.|....++..+. .. .. .++++++|++.++.- ...+.--.|.+++|||||++.+.. ...|..+
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~~---~~l~~~l 520 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKNDE---SKLYESL 520 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCchH---HHHHHHH
Confidence 555555444432211 11 12 479999999988743 233444579999999999997532 2333333
Q ss_pred HHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHH
Q 005742 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392 (679)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~ 392 (679)
..+ . -...|++|+||.++...+++..++|..+..+-...-+.... ..........++..
T Consensus 521 ~~f----~---------~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~--------~~~~e~~~~~L~~~ 579 (1373)
T KOG0384|consen 521 NQF----K---------MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF--------DEETEEQVRKLQQI 579 (1373)
T ss_pred HHh----c---------ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh--------cchhHHHHHHHHHH
Confidence 222 1 34689999999999999999999987655443322211111 11113445666776
Q ss_pred HHHHhhhccc-------cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc
Q 005742 393 IDIYTKKKKT-------GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (679)
Q Consensus 393 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (679)
+..+..++.. ..+...++...+......++...+-........+............+...+...+.||.+..-
T Consensus 580 L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gae 659 (1373)
T KOG0384|consen 580 LKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAE 659 (1373)
T ss_pred hhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHH
Confidence 6666555444 334555666666666555554443222222222211111111111222233333444444333
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCch---HHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005742 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKP---AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
+.+....+. .. ....+...+..+.|+ ++||..|++. +++||||.++++..+.|++||..+++..-.+
T Consensus 660 e~~~~~~~~-~~-------~d~~L~~lI~sSGKlVLLDKLL~rLk~~--GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRL 729 (1373)
T KOG0384|consen 660 EKILGDFRD-KM-------RDEALQALIQSSGKLVLLDKLLPRLKEG--GHRVLIFSQMVRMLDILAEYLSLRGYPFQRL 729 (1373)
T ss_pred HHHHHhhhh-cc-------hHHHHHHHHHhcCcEEeHHHHHHHHhcC--CceEEEhHHHHHHHHHHHHHHHHcCCcceec
Confidence 322211110 00 011122222333333 3333333332 5699999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHh---CCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEE--Eec
Q 005742 543 NASLPKSQLRRVHTEFH---ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL--YAN 617 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~---~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~--l~~ 617 (679)
+|.+..+-|++.++.|. +..+.+|+||.+++.|||+...|+||.||..|+++.-+|.+.||+|.||+..|-+ |++
T Consensus 730 DGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVT 809 (1373)
T KOG0384|consen 730 DGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVT 809 (1373)
T ss_pred cCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEec
Confidence 99999999999999998 5688999999999999999999999999999999999999999999999987655 455
Q ss_pred CCC
Q 005742 618 LSS 620 (679)
Q Consensus 618 ~~~ 620 (679)
...
T Consensus 810 k~T 812 (1373)
T KOG0384|consen 810 KNT 812 (1373)
T ss_pred CCc
Confidence 443
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.1e-27 Score=268.24 Aligned_cols=388 Identities=13% Similarity=0.084 Sum_probs=221.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHhc-----C-
Q 005742 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKH-----G- 237 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~-----~- 237 (679)
|+..+|+|+|+.+.........+|+.+|||+|||.+++..+.. ...+++|..||+++++|+++++.++ +
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344899999988544344567899999999999998876642 2469999999999999999998752 2
Q ss_pred CceEEEcCCCCcHHH-------------------H-HHHHc---C---CccEEEEChHHHHH-HHHHHHHHHhhc--Cce
Q 005742 238 VTACFLGSGQPDNKV-------------------E-QKALR---G---MYSIIYVCPETVIR-LIKPLQRLAESR--GIA 288 (679)
Q Consensus 238 ~~~~~~~~~~~~~~~-------------------~-~~~~~---~---~~~Ili~Tp~~l~~-ll~~~~~~~~~~--~~~ 288 (679)
..+...++....... . ...+. + ..+|+|+|..+++. .+......+..- .-+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 233444433211000 0 00111 0 15899999988773 332111111111 135
Q ss_pred EEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC
Q 005742 289 LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP 368 (679)
Q Consensus 289 lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~ 368 (679)
+|||||+|.+-.. ....+..+....... ..++++||||++....+.+...++..... ..... -|
T Consensus 442 vvIiDEVHAyD~y---m~~lL~~~L~~l~~~----------g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~--YP 505 (878)
T PRK09694 442 VLIVDEVHAYDAY---MYGLLEAVLKAQAQA----------GGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSA--YP 505 (878)
T ss_pred eEEEechhhCCHH---HHHHHHHHHHHHHhc----------CCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccc--cc
Confidence 8999999987421 122333332222221 57899999999998888887765422100 00000 00
Q ss_pred CcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCC
Q 005742 369 NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGN 448 (679)
Q Consensus 369 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (679)
-+....... ..... .............+
T Consensus 506 lvt~~~~~~-----------~~~~~--~~~~~~~~~~~~~v--------------------------------------- 533 (878)
T PRK09694 506 LITWRGVNG-----------AQRFD--LSAHPEQLPARFTI--------------------------------------- 533 (878)
T ss_pred ccccccccc-----------ceeee--ccccccccCcceEE---------------------------------------
Confidence 000000000 00000 00000000000000
Q ss_pred CCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHH
Q 005742 449 SPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLS 527 (679)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~ 527 (679)
....+ ..........+++.+.+. ..++++||||||++.++.
T Consensus 534 -------~v~~~-------------------------------~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ 575 (878)
T PRK09694 534 -------QLEPI-------------------------------CLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQK 575 (878)
T ss_pred -------EEEee-------------------------------ccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 00000 000000011222233222 235689999999999999
Q ss_pred HHHHHHhCC---CcEEEecCCCCHHHH----HHHHHHH-hCCC---eeEEEEecccccCcccccccEEEEeCCCCCHHHH
Q 005742 528 IAKYLCGFG---VKAAAYNASLPKSQL----RRVHTEF-HENK---LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596 (679)
Q Consensus 528 l~~~L~~~~---~~~~~~hg~~~~~~R----~~v~~~F-~~g~---~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y 596 (679)
+++.|++.+ ..+..+||.++..+| +++++.| ++|+ ..|||||+++++|||| ++|++|....| +..+
T Consensus 576 ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsL 652 (878)
T PRK09694 576 LYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLL 652 (878)
T ss_pred HHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHH
Confidence 999999765 679999999999999 4677788 6665 4799999999999999 68999998888 7899
Q ss_pred HHHhhccccCCCC----c----eEEEEecCCCCCccCCCCC---CHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCC
Q 005742 597 YQEAGRAGRDGHL----A----DCVLYANLSSMPTLLPSRR---SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665 (679)
Q Consensus 597 ~Qr~GRagR~G~~----g----~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~ 665 (679)
+||+||+||.++. | .++++.. .+.. ...... ....+.+....|...-.-........+.++...||+
T Consensus 653 iQRaGR~~R~~~~~rp~~~~~p~~~V~~p-~~~~-~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~vY~~ 730 (878)
T PRK09694 653 FQRLGRLHRHHRKYRPAGFEIPVATVLLP-DGEG-YGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESVYDE 730 (878)
T ss_pred HHHHhccCCCCCCCCCCCCcCceEEEEec-cccc-cCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHHhCC
Confidence 9999999998763 2 2344322 2111 111111 122334444444432100124566778888888877
Q ss_pred CC
Q 005742 666 DF 667 (679)
Q Consensus 666 ~~ 667 (679)
..
T Consensus 731 ~~ 732 (878)
T PRK09694 731 AE 732 (878)
T ss_pred Cc
Confidence 63
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=5.8e-28 Score=278.86 Aligned_cols=304 Identities=14% Similarity=0.144 Sum_probs=193.1
Q ss_pred HHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHHHHHHHh-cCCceEEEcCCCCcHHH
Q 005742 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNKV 252 (679)
Q Consensus 180 ~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~ 252 (679)
+.+..+..+..+||+++||||||. ++|.+. ..+++++.-|.|--+...+..+.+ ++.......|.....
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~-- 149 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF-- 149 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC--
Confidence 445555556778999999999998 566543 234677788988777776666655 344332222211100
Q ss_pred HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccc-ccccCCCCchHH-HHHHHHHHHhhccccccccCCC
Q 005742 253 EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH-CVSKWGHDFRPD-YRRLSVLRENFGANNLKSLKFD 330 (679)
Q Consensus 253 ~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH-~l~~~g~~f~~~-~~~l~~~~~~~~~~~~~~~~~~ 330 (679)
........+|.|+|+++|++.+. .. ..+.++++||||||| +.++.+ |... +.++ ... .++
T Consensus 150 -~~~~s~~T~I~~~TdGiLLr~l~--~d-~~L~~~~~IIIDEaHERsL~~D--~LL~lLk~i---l~~---------rpd 211 (1283)
T TIGR01967 150 -HDQVSSNTLVKLMTDGILLAETQ--QD-RFLSRYDTIIIDEAHERSLNID--FLLGYLKQL---LPR---------RPD 211 (1283)
T ss_pred -CcccCCCceeeeccccHHHHHhh--hC-cccccCcEEEEcCcchhhccch--hHHHHHHHH---Hhh---------CCC
Confidence 01123457899999999987665 22 247889999999999 465533 4332 2222 211 237
Q ss_pred CCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccc
Q 005742 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAI 410 (679)
Q Consensus 331 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (679)
.++++||||+... .+.+.++- ...+..... ..++..............-...+
T Consensus 212 LKlIlmSATld~~---~fa~~F~~--apvI~V~Gr-~~PVev~Y~~~~~~~~~~~~~~~--------------------- 264 (1283)
T TIGR01967 212 LKIIITSATIDPE---RFSRHFNN--APIIEVSGR-TYPVEVRYRPLVEEQEDDDLDQL--------------------- 264 (1283)
T ss_pred CeEEEEeCCcCHH---HHHHHhcC--CCEEEECCC-cccceeEEecccccccchhhhHH---------------------
Confidence 8899999999643 44555432 111111110 01111100000000000000000
Q ss_pred cccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccch
Q 005742 411 PQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSF 490 (679)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (679)
T Consensus 265 -------------------------------------------------------------------------------- 264 (1283)
T TIGR01967 265 -------------------------------------------------------------------------------- 264 (1283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCC---CcEEEecCCCCHHHHHHHHHHHhCCCeeEEE
Q 005742 491 ERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG---VKAAAYNASLPKSQLRRVHTEFHENKLEVVV 567 (679)
Q Consensus 491 ~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLV 567 (679)
......+..+... ..+.+|||+++.++++.+++.|.+.+ +.+..+||+|++++|.++++.+ +..+|||
T Consensus 265 ------~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVL 335 (1283)
T TIGR01967 265 ------EAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVL 335 (1283)
T ss_pred ------HHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEE
Confidence 0000111111111 35799999999999999999998764 4588999999999999986553 3468999
Q ss_pred EecccccCcccccccEEEEeCCC------------------CCHHHHHHHhhccccCCCCceEEEEecCCCCC
Q 005742 568 ATIAFGMGIDKLNVRRIIHYGWP------------------QSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (679)
Q Consensus 568 aT~~~~~GiDip~v~~VI~~d~p------------------~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~~ 622 (679)
||+++++|||||+|++||++|++ .|..+|.||+|||||.| +|.|+.+|+..+..
T Consensus 336 ATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 336 ATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred eccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 99999999999999999999954 36689999999999997 99999999876543
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=6.3e-28 Score=280.28 Aligned_cols=354 Identities=16% Similarity=0.157 Sum_probs=198.2
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEeecCCcchhhhhhhh--hc---cCCeEEEEcCchHHHHHHHHHHHhcCCceEE
Q 005742 173 SLKNFQKEALSAWLA----H-HDCLVLAATGSGKSLCFQIPA--LL---TGKVVVVISPLISLMHDQCSKLSKHGVTACF 242 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~----g-~d~iv~a~TGsGKTl~~~lp~--l~---~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~ 242 (679)
.||+||.+|+.++.+ | +++++++|||||||++++..+ +. ..+++|||+|+++|+.|+...|..++.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 589999999988762 3 679999999999998754332 22 3579999999999999999999997543221
Q ss_pred -EcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHH---HHHhhcCceEEEeeccccccc----CC---CCchH---H
Q 005742 243 -LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ---RLAESRGIALFAIDEVHCVSK----WG---HDFRP---D 308 (679)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~---~~~~~~~~~lvViDEaH~l~~----~g---~~f~~---~ 308 (679)
+.+-...............+|+|+|+++|.+.+.... .......+++||+||||+... .+ ..|+. .
T Consensus 493 ~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~ 572 (1123)
T PRK11448 493 TFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDY 572 (1123)
T ss_pred chhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhH
Confidence 1000000000111123457899999999876432101 113456789999999999631 00 00221 1
Q ss_pred HHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEe------cccCC---CCcEEEEEecCC
Q 005742 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL------TSFFR---PNLRFSVKHSKT 379 (679)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~------~~~~r---~~~~~~v~~~~~ 379 (679)
+.....+..+| +...++|||||.... ...++- +...+. ..+.- +++.+.......
T Consensus 573 ~~~yr~iL~yF----------dA~~IGLTATP~r~t----~~~FG~--pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 573 VSKYRRVLDYF----------DAVKIGLTATPALHT----TEIFGE--PVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred HHHHHHHHhhc----------CccEEEEecCCccch----hHHhCC--eeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 33333333333 456899999996432 222221 000000 00000 111111100000
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCc-cCCCCCCCcchhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE-DVGNSPMGKEMSVE 458 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 458 (679)
... + .. .+....+.... .........+ ..
T Consensus 637 gi~--~------------------------------------~~----------~e~~~~~~~~~~~i~~~~l~d~--~~ 666 (1123)
T PRK11448 637 GIH--F------------------------------------EK----------GEEVEVINTQTGEIDLATLEDE--VD 666 (1123)
T ss_pred ccc--c------------------------------------cc----------cchhhhcchhhhhhhhccCcHH--Hh
Confidence 000 0 00 00000000000 0000000000 00
Q ss_pred hhccCCccccccccccccCCCCCCCCCCccchhhccccC-chHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC--
Q 005742 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLN-KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-- 535 (679)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-- 535 (679)
+... .... .....+... -...+.+.+... ..+++||||.++++++.+++.|.+.
T Consensus 667 ~~~~-~~~~---------------------~vi~~~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 667 FEVE-DFNR---------------------RVITESFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred hhHH-HHHH---------------------HHhhHHHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 0000 0000 000000000 012233333222 2479999999999999999988763
Q ss_pred ----C---CcEEEecCCCCHHHHHHHHHHHhCCCe-eEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCC
Q 005742 536 ----G---VKAAAYNASLPKSQLRRVHTEFHENKL-EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (679)
Q Consensus 536 ----~---~~~~~~hg~~~~~~R~~v~~~F~~g~~-~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G 607 (679)
+ ..+..+||+++ ++..++++|+++.. +|+|+++++.+|+|+|.|++||++..+.|...|+|++||+.|.-
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 2 24567899875 46789999999887 69999999999999999999999999999999999999999964
Q ss_pred C--CceEEEEec
Q 005742 608 H--LADCVLYAN 617 (679)
Q Consensus 608 ~--~g~~~~l~~ 617 (679)
. .....++++
T Consensus 802 ~~~~K~~f~I~D 813 (1123)
T PRK11448 802 PEIGKTHFRIFD 813 (1123)
T ss_pred ccCCCceEEEEe
Confidence 3 233444444
No 94
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=7e-28 Score=254.54 Aligned_cols=397 Identities=13% Similarity=0.155 Sum_probs=261.9
Q ss_pred CCCCHHHHHHHHHHHc----CCCEEEEeecCCcchh--hhhhhhhcc----CCeEEEEcCchHHHHHHHHHHHhcC--Cc
Q 005742 172 SSLKNFQKEALSAWLA----HHDCLVLAATGSGKSL--CFQIPALLT----GKVVVVISPLISLMHDQCSKLSKHG--VT 239 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~----g~d~iv~a~TGsGKTl--~~~lp~l~~----~~~vLvl~Pt~~L~~q~~~~l~~~~--~~ 239 (679)
..|.+||++++.|+.+ +...|+-..+|.|||+ +..|.++.. .+++|||||. .++.||..+|..+. .+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 4689999999999863 5678999999999995 233444433 3799999996 78999999999984 44
Q ss_pred eEEEcCCCCc--------HHHHHH----HHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchH
Q 005742 240 ACFLGSGQPD--------NKVEQK----ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (679)
Q Consensus 240 ~~~~~~~~~~--------~~~~~~----~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~ 307 (679)
+.++++.... ...... ......+|+|+|++.+.-. ...+.-..|+++|+||.|++.+.+.....
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----~d~l~~~~W~y~ILDEGH~IrNpns~isl 358 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----GDDLLGILWDYVILDEGHRIRNPNSKISL 358 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----CcccccccccEEEecCcccccCCccHHHH
Confidence 5555554442 111111 1223457999999866422 22233456999999999999765532222
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccch----
Q 005742 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA---- 383 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~---- 383 (679)
...+| . ..+++.||+||-+++..+++..+.+..+...-..+.++.++...+.........
T Consensus 359 ackki-------~---------T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 359 ACKKI-------R---------TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred HHHhc-------c---------ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 22222 2 678999999999999999999987766665555555666555544443322211
Q ss_pred ----hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 384 ----SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 384 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
.....+..++..|..++.........++...+.... + .....++..+..|
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~Vlf--C------------------------~LT~~QR~~Y~~f 476 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLF--C------------------------RLTKLQRRLYQRF 476 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEE--E------------------------eccHHHHHHHHHH
Confidence 123456777777777666554433111111000000 0 0111122233333
Q ss_pred hccC--------------CccccccccccccCCCCCC--CCCCccchhhccccCchHHHhhhccCCCC-CCcEEEEeCch
Q 005742 460 LEND--------------SVDDWDVACGEFYGHSPHR--DRDTDRSFERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTR 522 (679)
Q Consensus 460 l~~~--------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~IVF~~t~ 522 (679)
+... .++.....|.+......+. ....+...-......|...+.++|..... +.++|+|.+++
T Consensus 477 l~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~ 556 (923)
T KOG0387|consen 477 LNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSR 556 (923)
T ss_pred hhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHH
Confidence 3222 1222333444333333321 00011110122234455555555555443 44999999999
Q ss_pred hHHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHHHHhCCC--eeEEEEecccccCcccccccEEEEeCCCCCHHHHHHH
Q 005742 523 KETLSIAKYLC-GFGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599 (679)
Q Consensus 523 ~~~~~l~~~L~-~~~~~~~~~hg~~~~~~R~~v~~~F~~g~--~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr 599 (679)
...+.|...|. ..++.+..++|..+...|..++++|.++. .-+|++|.+.+.|+|+...+-||.||+.|++.+-.|.
T Consensus 557 ~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QA 636 (923)
T KOG0387|consen 557 QMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQA 636 (923)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHH
Confidence 99999999999 68999999999999999999999999774 3479999999999999999999999999999999999
Q ss_pred hhccccCCCCceEEEE
Q 005742 600 AGRAGRDGHLADCVLY 615 (679)
Q Consensus 600 ~GRagR~G~~g~~~~l 615 (679)
.-||.|.||+..|++|
T Consensus 637 reRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 637 RERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHHHhhcCccceEEE
Confidence 9999999999888775
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.5e-26 Score=258.40 Aligned_cols=362 Identities=22% Similarity=0.177 Sum_probs=232.1
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCce---
Q 005742 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTA--- 240 (679)
Q Consensus 167 ~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~--- 240 (679)
..++| +|-++|++|+..+.+|..++|+||||+|||+++..++. ..+.++++.+|.++|.+|.+++|...-..+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~ 192 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADM 192 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhh
Confidence 46788 79999999999999999999999999999998765553 478889999999999999999987742222
Q ss_pred -EEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCCCchHHHHHHHHHHH
Q 005742 241 -CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRE 317 (679)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~ 317 (679)
.+++++.. +++++.++|+|.|.|.+++. .+...+.++..||+||+|.+.+ +|-.|+..+-
T Consensus 193 vGL~TGDv~--------IN~~A~clvMTTEILRnMly--rg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii------- 255 (1041)
T COG4581 193 VGLMTGDVS--------INPDAPCLVMTTEILRNMLY--RGSESLRDIEWVVFDEVHYIGDRERGVVWEEVII------- 255 (1041)
T ss_pred ccceeccee--------eCCCCceEEeeHHHHHHHhc--cCcccccccceEEEEeeeeccccccchhHHHHHH-------
Confidence 33343332 45678999999999998887 6666788999999999999976 5544444433
Q ss_pred hhccccccccCCCCCEEEEEccCChhhHHHHHHHcCC--CCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHH
Q 005742 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHM--SKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 395 (679)
.+|..+++++||||.+ +..++..|+.- ..+..++...+...++...+.....- ..+++.
T Consensus 256 --------~lP~~v~~v~LSATv~--N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l---------~~lvde 316 (1041)
T COG4581 256 --------LLPDHVRFVFLSATVP--NAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGL---------FDLVDE 316 (1041)
T ss_pred --------hcCCCCcEEEEeCCCC--CHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCce---------eeeecc
Confidence 3455789999999994 55667777652 33555555555555666555433110 000000
Q ss_pred HhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccc
Q 005742 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEF 475 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (679)
... .. .................. ...+.-+.+....+.-
T Consensus 317 ---~~~------~~---------~~~~~~a~~~l~~~~~~~-----------------------~~~~~~~~~~~a~~~~ 355 (1041)
T COG4581 317 ---KKK------FN---------AENFPSANRSLSCFSEKV-----------------------RETDDGDVGRYARRTK 355 (1041)
T ss_pred ---ccc------ch---------hhcchhhhhhhhccchhc-----------------------cccCcccccccccccc
Confidence 000 00 000000000000000000 0000000000000000
Q ss_pred cCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh---------------------
Q 005742 476 YGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG--------------------- 534 (679)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~--------------------- 534 (679)
.+ ..... ...+...++..|... ...++|+|+-+++.|+..+..+..
T Consensus 356 ~~-----------~~~~~-~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i 422 (1041)
T COG4581 356 AL-----------RGSAK-GPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAI 422 (1041)
T ss_pred cc-----------CCccc-ccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Confidence 00 00000 000101122222221 245899999999999999987763
Q ss_pred -------C-------------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC-----
Q 005742 535 -------F-------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW----- 589 (679)
Q Consensus 535 -------~-------------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~----- 589 (679)
+ .-.+..+|++|-+..|..+...|..|-++|++||.+++.|||+|. +.|+.+.+
T Consensus 423 ~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG 501 (1041)
T COG4581 423 GDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDG 501 (1041)
T ss_pred hhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEecC
Confidence 1 113558999999999999999999999999999999999999997 55554443
Q ss_pred ----CCCHHHHHHHhhccccCCCC--ceEEEEecCCC
Q 005742 590 ----PQSLEAYYQEAGRAGRDGHL--ADCVLYANLSS 620 (679)
Q Consensus 590 ----p~s~~~y~Qr~GRagR~G~~--g~~~~l~~~~~ 620 (679)
.-+..+|.|+.|||||.|.. |.+++...+..
T Consensus 502 ~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 502 NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred CceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 34689999999999999975 88888754443
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.1e-26 Score=250.23 Aligned_cols=377 Identities=18% Similarity=0.192 Sum_probs=240.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++++-++.+|. .|++.|..+--.+.+| -|+.++||+|||++|.+|++. .+..++||+||+.||.|.++++..+
T Consensus 71 vrEa~~R~lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 71 VREVSLRTLGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred HHHHHHHHcCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 34444556676 6888888776666555 499999999999999999984 5778999999999999999988874
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHHHH-HHh-----hcCceEEEeecccccc-c-----
Q 005742 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQR-LAE-----SRGIALFAIDEVHCVS-K----- 300 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~~~-~~~-----~~~~~lvViDEaH~l~-~----- 300 (679)
|+.+.++.++..... ..... .++|+|+||+++ .+++.. + ..+ .+.+.++||||||.++ +
T Consensus 148 ~~lGLtv~~i~gg~~~~~-r~~~y--~~dIvygT~grlgfDyLrd--~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtP 222 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKE-KQEAY--KADIVYGTNNEYGFDYLRD--NMAFSLTDKVQRELNFAIVDEVDSILIDEARTP 222 (896)
T ss_pred cccCceEEEEeCCCCHHH-HHHHh--CCCEEEECChhhhHHHHhc--CCccchHhhhccccceEEeccHhhhhhhccCCc
Confidence 788888877755443 22222 479999999998 676662 2 112 2689999999999883 1
Q ss_pred -----CCCCchHHHHHHHHHHHhhcccc------ccccCCCCCEEEEEccCChhhHH-----------------------
Q 005742 301 -----WGHDFRPDYRRLSVLRENFGANN------LKSLKFDIPLMALTATATIQVRE----------------------- 346 (679)
Q Consensus 301 -----~g~~f~~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~lSAT~~~~~~~----------------------- 346 (679)
........|..+..+...+.... -.......+.+.||-.-......
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~ 302 (896)
T PRK13104 223 LIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLM 302 (896)
T ss_pred eeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHH
Confidence 11122345655555555443220 01112234455565542111111
Q ss_pred -HHHHHc----CCCCCc--------eEEecccC-C--CCcEEE--------------------------------EEecC
Q 005742 347 -DILKSL----HMSKGT--------KFVLTSFF-R--PNLRFS--------------------------------VKHSK 378 (679)
Q Consensus 347 -~i~~~l----~~~~~~--------~~~~~~~~-r--~~~~~~--------------------------------v~~~~ 378 (679)
.+...| -+..+. .+++..+. | +.-+|. ....-
T Consensus 303 ~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kL 382 (896)
T PRK13104 303 HHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKL 382 (896)
T ss_pred HHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchh
Confidence 011000 011111 11111110 0 000000 01111
Q ss_pred CccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhh
Q 005742 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (679)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (679)
.....+....-.++...|...-...+.....+..+..+.
T Consensus 383 sGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~----------------------------------------- 421 (896)
T PRK13104 383 SGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADL----------------------------------------- 421 (896)
T ss_pred ccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCe-----------------------------------------
Confidence 112244444556666777666444332222211111100
Q ss_pred hhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCC
Q 005742 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGV 537 (679)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~ 537 (679)
+ ......|...+++.+.+.. .+.|+||||+|++.++.++++|.+.|+
T Consensus 422 -v-------------------------------~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi 469 (896)
T PRK13104 422 -V-------------------------------YLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENI 469 (896)
T ss_pred -E-------------------------------EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 0 0011123344444444433 355999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccc------------------------------------
Q 005742 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV------------------------------------ 581 (679)
Q Consensus 538 ~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v------------------------------------ 581 (679)
....+||.+.+.+++.+.++|+.|. |+|||++++||+||.=-
T Consensus 470 ~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 470 KHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred CeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 9999999999999999999999994 99999999999998621
Q ss_pred --cEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 582 --RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 582 --~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
=+||-...+.|..---|-.||+||.|.+|.+..|++..|
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 267888888999999999999999999999999998776
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=9.9e-26 Score=248.06 Aligned_cols=379 Identities=18% Similarity=0.180 Sum_probs=240.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
+.++..+.+|. .|++.|..+.-.+.+|+ |+.+.||+|||+++.+|++. .|..|-|++|+--||.|.++.+..
T Consensus 69 vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 45555667787 79999999877777666 99999999999999999874 799999999999999999988876
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHHH----HHHHhhcCceEEEeecccccc---------
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKPL----QRLAESRGIALFAIDEVHCVS--------- 299 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~~----~~~~~~~~~~lvViDEaH~l~--------- 299 (679)
+|+.+..+.++..... ..... .++|+++|...+. ++|+.. ....-.+.+.+.||||+|.++
T Consensus 146 ~~LGl~vg~i~~~~~~~~-r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDE-KRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred HhcCCeEEEeCCCCCHHH-HHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 4899888876554432 22222 4699999998775 333320 122234678999999999873
Q ss_pred --cCCCCchHHHHHHHHHHHhhcccc-----------ccccCCCCCEEEEEccCCh---------------------hhH
Q 005742 300 --KWGHDFRPDYRRLSVLRENFGANN-----------LKSLKFDIPLMALTATATI---------------------QVR 345 (679)
Q Consensus 300 --~~g~~f~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~l~lSAT~~~---------------------~~~ 345 (679)
+........|..+..+...+.... --......+.+.||..-.. .+.
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 111123345555555554433210 0001112233444421100 000
Q ss_pred HHHHHHcCCCCCc--------eEEeccc-CC--CCcEEE--------------------------------EEecCCccc
Q 005742 346 EDILKSLHMSKGT--------KFVLTSF-FR--PNLRFS--------------------------------VKHSKTSSR 382 (679)
Q Consensus 346 ~~i~~~l~~~~~~--------~~~~~~~-~r--~~~~~~--------------------------------v~~~~~~~~ 382 (679)
..+.....+..+. .++...+ -| ++-.|. ....-....
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 1111110011110 1111110 00 000000 000111112
Q ss_pred hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhcc
Q 005742 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (679)
++....-.++...|...-...+............
T Consensus 383 GTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d---------------------------------------------- 416 (796)
T PRK12906 383 GTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPD---------------------------------------------- 416 (796)
T ss_pred CCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCC----------------------------------------------
Confidence 3334445566666666544332211111100000
Q ss_pred CCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEE
Q 005742 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541 (679)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~ 541 (679)
........|...+++.+.+. ..+.++||||+++..++.+++.|.+.|+....
T Consensus 417 ---------------------------~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~ 469 (796)
T PRK12906 417 ---------------------------LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAV 469 (796)
T ss_pred ---------------------------eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeE
Confidence 00001122444555555433 23569999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccc---ccc-----EEEEeCCCCCHHHHHHHhhccccCCCCceEE
Q 005742 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL---NVR-----RIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613 (679)
Q Consensus 542 ~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~ 613 (679)
+||++.+.++..+.++++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++|||||.|.+|.+.
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999888888888888886 999999999999994 899 9999999999999999999999999999999
Q ss_pred EEecCCC
Q 005742 614 LYANLSS 620 (679)
Q Consensus 614 ~l~~~~~ 620 (679)
.|++..|
T Consensus 548 ~~~sleD 554 (796)
T PRK12906 548 FYLSLED 554 (796)
T ss_pred EEEeccc
Confidence 9998775
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=240.09 Aligned_cols=353 Identities=18% Similarity=0.194 Sum_probs=238.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005742 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
.+.| +|-|+|..||..+-++..++|.|.|.+|||.++..++. ..+.+||+.+|-++|-+|.+++|..---.+...+
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMT 203 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMT 203 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceee
Confidence 4456 68999999999999999999999999999988765553 3678999999999999999999988544555666
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCCCchHHHHHHHHHHHhhccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGAN 322 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~~~~~~ 322 (679)
|+.+. ...+..+|+|.|.|..++. ++.--++.+.+||+||+|.|-+ +|-.|++.+
T Consensus 204 GDVTI--------nP~ASCLVMTTEILRsMLY--RGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI------------- 260 (1041)
T KOG0948|consen 204 GDVTI--------NPDASCLVMTTEILRSMLY--RGSEVMREVAWVIFDEIHYMRDKERGVVWEETI------------- 260 (1041)
T ss_pred cceee--------CCCCceeeeHHHHHHHHHh--ccchHhheeeeEEeeeehhccccccceeeeeeE-------------
Confidence 65543 3457889999999998888 6777788999999999999964 665555443
Q ss_pred cccccCCCCCEEEEEccCChhhHHHHHHHcCC--CCCceEEecccCCCCcEEEEEecCCccc-------hh-hhHhHHHH
Q 005742 323 NLKSLKFDIPLMALTATATIQVREDILKSLHM--SKGTKFVLTSFFRPNLRFSVKHSKTSSR-------AS-YKKDFCQL 392 (679)
Q Consensus 323 ~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~~r~~~~~~v~~~~~~~~-------~~-~~~~~~~~ 392 (679)
--+|.+.+.++||||.+. ...+..|+.- ..+..++.+.+...++..-+.+...... .. -.+.|...
T Consensus 261 --IllP~~vr~VFLSATiPN--A~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~a 336 (1041)
T KOG0948|consen 261 --ILLPDNVRFVFLSATIPN--ARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKA 336 (1041)
T ss_pred --EeccccceEEEEeccCCC--HHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHH
Confidence 345678999999999964 4456666531 2245555665554455433222111110 11 12334444
Q ss_pred HHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccc
Q 005742 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVAC 472 (679)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (679)
...+.......++...- .. +..
T Consensus 337 m~~l~~~~~~~~~~~~~----------------------------------~k-~~k----------------------- 358 (1041)
T KOG0948|consen 337 MSVLRKAGESDGKKKAN----------------------------------KK-GRK----------------------- 358 (1041)
T ss_pred HHHhhccCCCccccccc----------------------------------cc-ccc-----------------------
Confidence 44333221111000000 00 000
Q ss_pred ccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh------------------
Q 005742 473 GEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------------ 534 (679)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~------------------ 534 (679)
+...+.. ....-..+++..+.+. ...++|||+-++++|+.+|-.+.+
T Consensus 359 G~~~~~~--------------~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 359 GGTGGKG--------------PGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCcCCCC--------------CCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 0000000 0001122333333332 145999999999999999987766
Q ss_pred ---------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCC---
Q 005742 535 ---------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP--- 590 (679)
Q Consensus 535 ---------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p--- 590 (679)
+..++..+|+|+-+--++-+.-.|.+|-+++|.||.+++.|+|.|+-.+|+ ..+.
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfD 502 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFD 502 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccC
Confidence 223567899999999999999999999999999999999999999854444 3322
Q ss_pred ------CCHHHHHHHhhccccCCC--CceEEEEecCCCCC
Q 005742 591 ------QSLEAYYQEAGRAGRDGH--LADCVLYANLSSMP 622 (679)
Q Consensus 591 ------~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~~~~ 622 (679)
-|--+|+|+.|||||.|. .|.|+++++..-.+
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~ 542 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEP 542 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecCcCCH
Confidence 145689999999999986 49999998765433
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=250.23 Aligned_cols=351 Identities=22% Similarity=0.294 Sum_probs=247.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHcCCCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEAL--SAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai--~~~l~g~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~ 229 (679)
+.++.+.....+..|+..++.+|.+++ +.+++++|+|..+||+.|||+++.+.++ ...+.++++.|..+.++..
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek 285 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEK 285 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHH
Confidence 555666676667789999999999997 5688899999999999999999988776 4689999999999999888
Q ss_pred HHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCC
Q 005742 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGH 303 (679)
Q Consensus 230 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~ 303 (679)
...+..+ |+.+-...|..+... .....+|.|+|.|+...+++.+-..-.+..+++||+||.|.+.+ +|.
T Consensus 286 ~~~l~~~~~~~G~~ve~y~g~~~p~~-----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~ 360 (1008)
T KOG0950|consen 286 ISALSPFSIDLGFPVEEYAGRFPPEK-----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA 360 (1008)
T ss_pred HhhhhhhccccCCcchhhcccCCCCC-----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch
Confidence 8888775 555555554433322 22346899999999988877665555677899999999999976 554
Q ss_pred CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccch
Q 005742 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (679)
Q Consensus 304 ~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~ 383 (679)
..+..+.++. +.......|+++||||+ .+..++..||. ..++.+.+...++.-.++....-...
T Consensus 361 ~lE~~l~k~~----------y~~~~~~~~iIGMSATi--~N~~lL~~~L~----A~~y~t~fRPv~L~E~ik~G~~i~~~ 424 (1008)
T KOG0950|consen 361 ILELLLAKIL----------YENLETSVQIIGMSATI--PNNSLLQDWLD----AFVYTTRFRPVPLKEYIKPGSLIYES 424 (1008)
T ss_pred HHHHHHHHHH----------HhccccceeEeeeeccc--CChHHHHHHhh----hhheecccCcccchhccCCCcccccc
Confidence 4444444442 22233347899999999 56677788874 33343334333443333322211111
Q ss_pred hhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccC
Q 005742 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (679)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (679)
+-...+.++...+... ....
T Consensus 425 ~r~~~lr~ia~l~~~~------------------------------------------------------------~g~~ 444 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSN------------------------------------------------------------LGDE 444 (1008)
T ss_pred hhhHHHHHhhhhhhhh------------------------------------------------------------cccC
Confidence 1111111111110000 0000
Q ss_pred CccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCC-cEEEEeCchhHHHHHHHHHHh--------
Q 005742 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCG-------- 534 (679)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~IVF~~t~~~~~~l~~~L~~-------- 534 (679)
+. +.++.+..+..+.+ ++||||++++.|+.++..+..
T Consensus 445 dp----------------------------------D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~ 490 (1008)
T KOG0950|consen 445 DP----------------------------------DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKS 490 (1008)
T ss_pred CC----------------------------------cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhh
Confidence 00 11122222233344 699999999999999976654
Q ss_pred ------------------------------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEE
Q 005742 535 ------------------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRI 584 (679)
Q Consensus 535 ------------------------------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~V 584 (679)
..++++++|++++.++|+.+...|++|...|++||+.++.|+++|..+++
T Consensus 491 e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVI 570 (1008)
T KOG0950|consen 491 EKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVI 570 (1008)
T ss_pred hhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeE
Confidence 24578999999999999999999999999999999999999999999999
Q ss_pred EEeCC----CCCHHHHHHHhhccccCCC--CceEEEEecCCCC
Q 005742 585 IHYGW----PQSLEAYYQEAGRAGRDGH--LADCVLYANLSSM 621 (679)
Q Consensus 585 I~~d~----p~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~~~ 621 (679)
|..-. ..+.-+|.|++|||||.|- .|.+++++...+.
T Consensus 571 iraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 571 IRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred EeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 86543 3567899999999999986 4999999988774
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.1e-25 Score=211.70 Aligned_cols=315 Identities=21% Similarity=0.233 Sum_probs=212.9
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEeecCCcchh-hhh--hhhhccCCeEEEEcCchHHHHHHHHHHHh-c-CCceEEE
Q 005742 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSL-CFQ--IPALLTGKVVVVISPLISLMHDQCSKLSK-H-GVTACFL 243 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl-~~~--lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~-~-~~~~~~~ 243 (679)
+|+++|+.+-+.++ +.++.||.|-||+|||. +|. -.++..|+++.+.+|....+.+.+.+|++ | +.....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999999877665 46799999999999995 343 23456899999999999999999999988 3 4677777
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHH-HHHHHHHhhccc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR-RLSVLRENFGAN 322 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~-~l~~~~~~~~~~ 322 (679)
+++....- . .+++|+|...++++-+ .++++||||+|..--.. .+.+. .+.
T Consensus 177 yg~S~~~f-------r-~plvVaTtHQLlrFk~---------aFD~liIDEVDAFP~~~---d~~L~~Av~--------- 227 (441)
T COG4098 177 YGDSDSYF-------R-APLVVATTHQLLRFKQ---------AFDLLIIDEVDAFPFSD---DQSLQYAVK--------- 227 (441)
T ss_pred ecCCchhc-------c-ccEEEEehHHHHHHHh---------hccEEEEeccccccccC---CHHHHHHHH---------
Confidence 77665432 1 5899999988877544 38999999999874110 11111 111
Q ss_pred cccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEE--EEecCCccchhhhHhHHHHHHHHhhhc
Q 005742 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS--VKHSKTSSRASYKKDFCQLIDIYTKKK 400 (679)
Q Consensus 323 ~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (679)
+..+....+++||||++.....++...-- ....+-..+.+.++... ++. ..+.+.+.
T Consensus 228 --~ark~~g~~IylTATp~k~l~r~~~~g~~---~~~klp~RfH~~pLpvPkf~w~------~~~~k~l~---------- 286 (441)
T COG4098 228 --KARKKEGATIYLTATPTKKLERKILKGNL---RILKLPARFHGKPLPVPKFVWI------GNWNKKLQ---------- 286 (441)
T ss_pred --HhhcccCceEEEecCChHHHHHHhhhCCe---eEeecchhhcCCCCCCCceEEe------ccHHHHhh----------
Confidence 11223667999999999877766643210 01111222222222110 100 00111000
Q ss_pred cccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCC
Q 005742 401 KTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSP 480 (679)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (679)
T Consensus 287 -------------------------------------------------------------------------------- 286 (441)
T COG4098 287 -------------------------------------------------------------------------------- 286 (441)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccchhhccccCchHHHhhhccCCCC-CCcEEEEeCchhHHHHHHHHHHh-CC-CcEEEecCCCCHHHHHHHHHH
Q 005742 481 HRDRDTDRSFERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCG-FG-VKAAAYNASLPKSQLRRVHTE 557 (679)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~~~hg~~~~~~R~~v~~~ 557 (679)
...-..++..+|+++.. +.+++||++++...+.++..|++ .. ..+..+|+. ...|.+..++
T Consensus 287 --------------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~ 350 (441)
T COG4098 287 --------------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEA 350 (441)
T ss_pred --------------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHH
Confidence 00112234445554443 45999999999999999999954 33 345777875 4578889999
Q ss_pred HhCCCeeEEEEecccccCcccccccEEEEeCC--CCCHHHHHHHhhccccCCC--CceEEEEecCCCCCccCCCCCCHHH
Q 005742 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--PQSLEAYYQEAGRAGRDGH--LADCVLYANLSSMPTLLPSRRSEDQ 633 (679)
Q Consensus 558 F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~--p~s~~~y~Qr~GRagR~G~--~g~~~~l~~~~~~~~~~~~~~~~~~ 633 (679)
||+|++.+||+|.+++||+.+|+|++.|.-.- -.+-+..+|.+||+||.-. .|.+..|... ....
T Consensus 351 fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G-----------~ska 419 (441)
T COG4098 351 FRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG-----------KSKA 419 (441)
T ss_pred HHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc-----------chHH
Confidence 99999999999999999999999998775332 2568899999999999643 3776666532 2445
Q ss_pred HHHHHHHHHHH
Q 005742 634 TKQAYRMLSDC 644 (679)
Q Consensus 634 ~~~~~~~l~~~ 644 (679)
|.++.+.++.|
T Consensus 420 M~~A~keIk~M 430 (441)
T COG4098 420 MKQARKEIKEM 430 (441)
T ss_pred HHHHHHHHHHH
Confidence 66777777776
No 101
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.4e-25 Score=243.29 Aligned_cols=379 Identities=18% Similarity=0.176 Sum_probs=244.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++++.++.+|. .|++.|..+.-.+.+|+ |+.++||+|||+++.+|++ ..|..+-|++||..||.|.++.+..+
T Consensus 70 vrEa~~R~lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 44455556787 79999998877776664 9999999999999999996 35777889999999999999988774
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHHH----HHHhhcCceEEEeecccccc-c-------
Q 005742 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQ----RLAESRGIALFAIDEVHCVS-K------- 300 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~~----~~~~~~~~~lvViDEaH~l~-~------- 300 (679)
|+++..+.++.+... ..... .++|+|+||..+ .++++... .....+.+.++||||||.++ +
T Consensus 147 ~~LGlsv~~i~~~~~~~e-r~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEE-RREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred hhcCCeEEEEcCCCCHHH-HHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 888888887765543 22222 379999999999 66665211 11346789999999999883 1
Q ss_pred ---CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhh-----------------HHHHHHHc----CCCC
Q 005742 301 ---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQV-----------------REDILKSL----HMSK 356 (679)
Q Consensus 301 ---~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~-----------------~~~i~~~l----~~~~ 356 (679)
........|..+..+...+....-.......+.+.||..-.... .+.+...| -+..
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 11122345666655555543211111222344555554211100 01111110 0111
Q ss_pred Cc--------eEEeccc-CC--CCcEEE--------------------------------EEecCCccchhhhHhHHHHH
Q 005742 357 GT--------KFVLTSF-FR--PNLRFS--------------------------------VKHSKTSSRASYKKDFCQLI 393 (679)
Q Consensus 357 ~~--------~~~~~~~-~r--~~~~~~--------------------------------v~~~~~~~~~~~~~~~~~~~ 393 (679)
+. .++...+ -| +.-+|. ....-.....+....-.++.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 11 1111110 00 000000 00111111233444556777
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005742 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
..|...-...+............
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~~d--------------------------------------------------------- 406 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDHPD--------------------------------------------------------- 406 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCC---------------------------------------------------------
Confidence 77776644433222111110000
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCC-CCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005742 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
........|...+.+.+.+. ..+.++||||+|+..++.+++.|.+.|+.+..+||. +.+|+
T Consensus 407 ----------------~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eRE 468 (830)
T PRK12904 407 ----------------LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHERE 468 (830)
T ss_pred ----------------eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHH
Confidence 00011123445555555442 235699999999999999999999999999999995 78999
Q ss_pred HHHHHHhCCCeeEEEEecccccCcccccc--------------------------------------cEEEEeCCCCCHH
Q 005742 553 RVHTEFHENKLEVVVATIAFGMGIDKLNV--------------------------------------RRIIHYGWPQSLE 594 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~v--------------------------------------~~VI~~d~p~s~~ 594 (679)
..+..|+.+...|+|||++++||+||+-- =+||-...|.|..
T Consensus 469 a~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrR 548 (830)
T PRK12904 469 AEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRR 548 (830)
T ss_pred HHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHH
Confidence 99999999999999999999999999642 2688888899999
Q ss_pred HHHHHhhccccCCCCceEEEEecCCC
Q 005742 595 AYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 595 ~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
---|..|||||.|.+|.+..|++..|
T Consensus 549 id~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 549 IDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhcccccCCCCCceeEEEEcCc
Confidence 99999999999999999999998775
No 102
>COG4889 Predicted helicase [General function prediction only]
Probab=99.93 E-value=2.6e-26 Score=243.25 Aligned_cols=401 Identities=15% Similarity=0.161 Sum_probs=240.7
Q ss_pred cCCccccCCccCCCCCCCCCccCCCCcccCCCccccccCCCCCCCCCccccCCcccCCCccccccCCChHHHHHHHHHHh
Q 005742 89 LLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKH 168 (679)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (679)
..++|....++.+++++...+..+ |.......++.+..+...+......++ |.+|+...+ .++...|. .
T Consensus 88 di~sF~t~lgkt~f~~gliiSTtd-w~sNA~~aieq~~~~~~~Iglsei~es-------~IDW~~f~p--~e~~~nl~-l 156 (1518)
T COG4889 88 DIDSFFTALGKTGFKNGLIISTTD-WTSNAEKAIEQQRSPGMRIGLSEIAES-------PIDWDIFDP--TELQDNLP-L 156 (1518)
T ss_pred cccHHHHHhccccccCceEEEecc-cchhHHHHHHhhhCccceecHHHHhcC-------CCChhhcCc--cccccccc-c
Confidence 347777777777888887777766 666666667777666666666555433 334432211 22223222 2
Q ss_pred cCCCCCCHHHHHHHHHHHcC----CCEEEEeecCCcchhhhhhhhh-ccCCeEEEEcCchHHHHHHHHHHHh---cCCce
Q 005742 169 FGHSSLKNFQKEALSAWLAH----HDCLVLAATGSGKSLCFQIPAL-LTGKVVVVISPLISLMHDQCSKLSK---HGVTA 240 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g----~d~iv~a~TGsGKTl~~~lp~l-~~~~~vLvl~Pt~~L~~q~~~~l~~---~~~~~ 240 (679)
..-.+|||+|++|+.++++| ...-+++++|+|||++.+-.+- ....++|+|||+.+|..|..++|.. ..+.+
T Consensus 157 ~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a 236 (1518)
T COG4889 157 KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRA 236 (1518)
T ss_pred CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCcccee
Confidence 23458999999999999875 4578899999999999875442 3458999999999999999999977 35666
Q ss_pred EEEcCCCCcHHH------------------------HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccc
Q 005742 241 CFLGSGQPDNKV------------------------EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (679)
Q Consensus 241 ~~~~~~~~~~~~------------------------~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH 296 (679)
..++++....+. .......+--||++|++.+...-+ ....-+..+++||+||||
T Consensus 237 ~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e--AQe~G~~~fDliicDEAH 314 (1518)
T COG4889 237 SAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE--AQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred EEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH--HHHcCCCCccEEEecchh
Confidence 666654332110 111112345799999999987655 445567889999999999
Q ss_pred ccccCC--CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHH--------HcCCCCCceEEecccC
Q 005742 297 CVSKWG--HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILK--------SLHMSKGTKFVLTSFF 366 (679)
Q Consensus 297 ~l~~~g--~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~--------~l~~~~~~~~~~~~~~ 366 (679)
|..+-- .+=...+.++ ....+++ ..++|.|||||.. ..+-.+ .+.--.+...+...++
T Consensus 315 RTtGa~~a~dd~saFt~v------Hs~~niK----a~kRlYmTATPki--y~eS~K~kAkd~s~~l~SMDDe~~fGeef~ 382 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRV------HSDQNIK----AAKRLYMTATPKI--YSESSKAKAKDHSAELSSMDDELTFGEEFH 382 (1518)
T ss_pred ccccceecccCcccceee------cCcchhH----HHHhhhcccCchh--hchhhhhhhhhccceeeccchhhhhchhhh
Confidence 986411 0001111111 1111111 4568999999944 111110 0000001111112222
Q ss_pred CCCcE------------EEEEecCCcc-------------chhhhHhHHHHHHHHhhhccccccccccccccCCCccCcC
Q 005742 367 RPNLR------------FSVKHSKTSS-------------RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTS 421 (679)
Q Consensus 367 r~~~~------------~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (679)
|-.+. +.|....... .....++...++..+....+.....
T Consensus 383 rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~--------------- 447 (1518)
T COG4889 383 RLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED--------------- 447 (1518)
T ss_pred cccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc---------------
Confidence 21111 1111000000 0001111111121111110000000
Q ss_pred CCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHH
Q 005742 422 SSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAE 501 (679)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (679)
..
T Consensus 448 ------------------------------------------------------------------------------n~ 449 (1518)
T COG4889 448 ------------------------------------------------------------------------------ND 449 (1518)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred HhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh---------------CCCcEEEecCCCCHHHHHHHHH---HHhCCCe
Q 005742 502 RLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---------------FGVKAAAYNASLPKSQLRRVHT---EFHENKL 563 (679)
Q Consensus 502 ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------------~~~~~~~~hg~~~~~~R~~v~~---~F~~g~~ 563 (679)
+...-....+..|+|-||.++++...+++.+.. ..+.+..++|.|...+|.+.+. .|..+++
T Consensus 450 ~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 450 LKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred ccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 000000011245899999999999888886654 2456677889999999955554 3457899
Q ss_pred eEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCC
Q 005742 564 EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (679)
Q Consensus 564 ~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G 607 (679)
+||--..++++|||+|.++.||++++..++.+.+|.+||+.|..
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999953
No 103
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=6.8e-24 Score=205.90 Aligned_cols=181 Identities=21% Similarity=0.283 Sum_probs=143.5
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc--------cCCeEEEEcCchHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL--------TGKVVVVISPLISLMH 227 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~--------~~~~vLvl~Pt~~L~~ 227 (679)
.+++.+...|.+ +|+..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++|+++|+.
T Consensus 5 ~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~ 83 (203)
T cd00268 5 GLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELAL 83 (203)
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHH
Confidence 566677788875 7999999999999999999999999999999999999999872 3568999999999999
Q ss_pred HHHHHHHhc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCC
Q 005742 228 DQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (679)
Q Consensus 228 q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~ 303 (679)
|+.+.+..+ ++.+..+.++..... ........++|+|+||+.+..++. .....+.+++++|+||||.+.+.+
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~l~~lIvDE~h~~~~~~- 159 (203)
T cd00268 84 QIAEVARKLGKHTNLKVVVIYGGTSIDK-QIRKLKRGPHIVVATPGRLLDLLE--RGKLDLSKVKYLVLDEADRMLDMG- 159 (203)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHH-HHHHhcCCCCEEEEChHHHHHHHH--cCCCChhhCCEEEEeChHHhhccC-
Confidence 999988876 556666666555433 334455678999999999988777 444667889999999999998655
Q ss_pred CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005742 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 304 ~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
+...+..+.. .++...+++++|||++..+...+...++
T Consensus 160 -~~~~~~~~~~-----------~l~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 160 -FEDQIREILK-----------LLPKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred -hHHHHHHHHH-----------hCCcccEEEEEeccCCHHHHHHHHHHCC
Confidence 6666666522 2334789999999999777665555543
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=6.1e-23 Score=226.29 Aligned_cols=380 Identities=18% Similarity=0.168 Sum_probs=236.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
++++-++.+|. .|++.|..+--.+.+| -|+.++||.|||++|.+|++. .+..|.||+|+..|+.|-++++..
T Consensus 71 vrEaa~R~lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 71 VREASKRVFEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred HHHHHHHHhCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34444556777 6888898765555544 599999999999999999974 577899999999999998888776
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHH----HHHHhhcCceEEEeeccccccc-C------
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVSK-W------ 301 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~----~~~~~~~~~~lvViDEaH~l~~-~------ 301 (679)
+|+++..+.++.... .+...-.++|+|+||..+ .++|... ....-.+.+.++||||||.++- .
T Consensus 148 ~~lGlsv~~i~~~~~~~---~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQ---EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HhcCCeEEEecCCCCHH---HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 488888887765542 122223579999999998 6666521 0112237899999999998742 1
Q ss_pred --C--CCchHHHHHHHHHHHhhccc-----------cccccCCCCCEEEEEccCChhhHH--------------------
Q 005742 302 --G--HDFRPDYRRLSVLRENFGAN-----------NLKSLKFDIPLMALTATATIQVRE-------------------- 346 (679)
Q Consensus 302 --g--~~f~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~l~lSAT~~~~~~~-------------------- 346 (679)
| ..-...|..+..+...+... .-.......+.+-||-.-......
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 1 11223455444443333210 001112233344444221111111
Q ss_pred ----HHHHHcC----CCCCc--------eEEeccc-CC--CCcEEE--------------------------------EE
Q 005742 347 ----DILKSLH----MSKGT--------KFVLTSF-FR--PNLRFS--------------------------------VK 375 (679)
Q Consensus 347 ----~i~~~l~----~~~~~--------~~~~~~~-~r--~~~~~~--------------------------------v~ 375 (679)
.+...|. +..+. .+++..+ -| +.-+|. ..
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 0000000 11111 1111111 00 000000 00
Q ss_pred ecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcch
Q 005742 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (679)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (679)
..-.....+....-.++...|...-...+........+..+.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~-------------------------------------- 426 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADL-------------------------------------- 426 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCc--------------------------------------
Confidence 011111233334445666667666444332222211111100
Q ss_pred hhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCC-CCcEEEEeCchhHHHHHHHHHHh
Q 005742 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCG 534 (679)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~IVF~~t~~~~~~l~~~L~~ 534 (679)
+ ......|...+++.+.+... +.++||||.++..++.++.+|..
T Consensus 427 ----i-------------------------------y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 427 ----V-------------------------------YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred ----E-------------------------------EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 0 00111233444444444333 45999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccc---------------------------------
Q 005742 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV--------------------------------- 581 (679)
Q Consensus 535 ~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v--------------------------------- 581 (679)
.++.+..+|+++++.+++.+.+.|+.|. |+|||++++||+||.--
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999998 99999999999998621
Q ss_pred ----cEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005742 582 ----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 582 ----~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
=+||-...+.|..---|..|||||.|.+|.+..|++..|.
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2688888899999999999999999999999999987763
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.6e-23 Score=231.06 Aligned_cols=126 Identities=25% Similarity=0.352 Sum_probs=102.9
Q ss_pred cCCCCC---CHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHhc----CC
Q 005742 169 FGHSSL---KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH----GV 238 (679)
Q Consensus 169 ~g~~~~---~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~~----~~ 238 (679)
.||..| +|+|.++++.++.++++++.++||+|||++|++|++. .+..++||+||++||.|.++.+..+ ++
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGL 164 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGL 164 (970)
T ss_pred ccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 477777 9999999999999999999999999999999999984 4556999999999999999888764 67
Q ss_pred ceEEEcCCCCcHHHHHHHHcCCccEEEEChHHH-HHHHHHHHHHHh-------hcCceEEEeecccccc
Q 005742 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQRLAE-------SRGIALFAIDEVHCVS 299 (679)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~ll~~~~~~~~-------~~~~~lvViDEaH~l~ 299 (679)
++..+.+|....... ... .++|+|+||+++ .++++ .+.+. .+.+.++||||||.++
T Consensus 165 sV~~i~GG~~~~eq~-~~y--~~DIVygTPgRLgfDyLr--d~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 165 TTGVLVSGSPLEKRK-EIY--QCDVVYGTASEFGFDYLR--DNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred eEEEEeCCCCHHHHH-HHc--CCCEEEECCChhHHHHhh--CCCCCcCHHHhhcccccEEEEechhhhh
Confidence 887777776654432 233 489999999999 88776 33222 2467899999999984
No 106
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.90 E-value=1.2e-23 Score=222.34 Aligned_cols=422 Identities=14% Similarity=0.123 Sum_probs=245.3
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEeecCCcchh---hhhhhhhc--cCCeEEEEcCchHHHHHHHHHHHhcCCc--eE
Q 005742 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSL---CFQIPALL--TGKVVVVISPLISLMHDQCSKLSKHGVT--AC 241 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl---~~~lp~l~--~~~~vLvl~Pt~~L~~q~~~~l~~~~~~--~~ 241 (679)
+|.+||.-.++|+. ++-++|+..++|.|||. +|+..+.. ..+..|||||.. -+..|.++|.+|... +.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsS-TleNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSS-TLENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecch-hHHHHHHHHHHhCCceEEE
Confidence 58999999999965 45689999999999995 23222222 467899999984 568999999999544 33
Q ss_pred EEcCCCCcHHHHHHHH---cCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 242 FLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 242 ~~~~~~~~~~~~~~~~---~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
..+|....+...+..+ ...++|+++|+..+..--+ -+.++...+|+++|+||+|.+.+++ ...|+.|..+.
T Consensus 478 ~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kd-DRsflk~~~~n~viyDEgHmLKN~~---SeRy~~LM~I~-- 551 (941)
T KOG0389|consen 478 PYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKD-DRSFLKNQKFNYVIYDEGHMLKNRT---SERYKHLMSIN-- 551 (941)
T ss_pred eccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChH-HHHHHHhccccEEEecchhhhhccc---hHHHHHhcccc--
Confidence 3444433332222222 2268999999987763222 1556667789999999999998765 55666664432
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEec-CCc-cchh----hhHhHHHH
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS-KTS-SRAS----YKKDFCQL 392 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~-~~~-~~~~----~~~~~~~~ 392 (679)
.-.+|+||+||.++++.+++..|.|--+..+. .....-...+..+.. ... .... .......+
T Consensus 552 -----------An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~-~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 552 -----------ANFRLLLTGTPLQNNLKELISLLAFVLPKVFD-SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred -----------ccceEEeeCCcccccHHHHHHHHHHHhhHhhh-ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999988653222111 110000001111110 000 0011 11223334
Q ss_pred HHHHhhhccccc-------cccccccccCCCccCcCCCCc----------------ccc---cccCC-----CCCCCCCC
Q 005742 393 IDIYTKKKKTGE-------KEKSAIPQDLDDQSDTSSSSS----------------MSE---ESRIS-----PNIGDGYY 441 (679)
Q Consensus 393 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------~~~---~~~~~-----~~~~~~~~ 441 (679)
+..+-.++.... +.+.+......+.....+... ... .+... |-..+.+|
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y 699 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIY 699 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhc
Confidence 444433333321 111111111111111000000 000 00000 00011122
Q ss_pred CCccCCC-------CCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccch-hhccccCchHHHhhhccCCCCC-
Q 005742 442 DDEDVGN-------SPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSF-ERTDLLNKPAERLSMLQEPLED- 512 (679)
Q Consensus 442 ~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~- 512 (679)
.+..+.. .+.-.....+|+..+-.--.+.....++-..++-. ...+. ...-.+.|...|-++|.+....
T Consensus 700 ~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~--~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 700 TDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLS--KFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred cHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCc--ccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 2221110 00001111112111100000111111111111100 01111 1112234444455555554444
Q ss_pred CcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCC--CeeEEEEecccccCcccccccEEEEeCCC
Q 005742 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN--KLEVVVATIAFGMGIDKLNVRRIIHYGWP 590 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g--~~~vLVaT~~~~~GiDip~v~~VI~~d~p 590 (679)
.|+|||.+.....+.|...|.-+++....++|...-.+|+.+++.|... -.-+|++|.+++.|||+...++||.||..
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC
Confidence 5999999999999999999999999999999999999999999999965 45689999999999999999999999999
Q ss_pred CCHHHHHHHhhccccCCCCceEEEE
Q 005742 591 QSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 591 ~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
-++-+-.|.-.||+|.||...|.++
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEE
Confidence 9999999999999999998877664
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=6.1e-23 Score=193.12 Aligned_cols=155 Identities=29% Similarity=0.419 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---c--CCeEEEEcCchHHHHHHHHHHHhcC----CceEEEcC
Q 005742 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLSKHG----VTACFLGS 245 (679)
Q Consensus 175 ~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~--~~~vLvl~Pt~~L~~q~~~~l~~~~----~~~~~~~~ 245 (679)
||+|.++++.+.+++++++.+|||+|||++|+++++. . ..++||++|+++|+.|+.+.+.++. +.+..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999998863 3 3499999999999999999998863 46777776
Q ss_pred CCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccccc
Q 005742 246 GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325 (679)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~ 325 (679)
+..........+...++|+|+||+++.+++.. ....+.++++||+||+|.+..++ +...+..+........
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~~~~----- 151 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISN--GKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLKRFK----- 151 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT--TSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSHTTT-----
T ss_pred cccccccccccccccccccccCcchhhccccc--cccccccceeeccCccccccccc--HHHHHHHHHHHhcCCC-----
Confidence 66644344445566799999999999987773 22356679999999999998764 6777776654433221
Q ss_pred ccCCCCCEEEEEccCCh
Q 005742 326 SLKFDIPLMALTATATI 342 (679)
Q Consensus 326 ~~~~~~~~l~lSAT~~~ 342 (679)
+.+++++|||++.
T Consensus 152 ----~~~~i~~SAT~~~ 164 (169)
T PF00270_consen 152 ----NIQIILLSATLPS 164 (169)
T ss_dssp ----TSEEEEEESSSTH
T ss_pred ----CCcEEEEeeCCCh
Confidence 5789999999983
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=6.5e-22 Score=220.34 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHHHHHHHh-cCCc----eEEE
Q 005742 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQCSKLSK-HGVT----ACFL 243 (679)
Q Consensus 175 ~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~----~~~~ 243 (679)
+....+.+.++.++.-+++++|||+|||. ++|.+. .++.+.+.-|.|--|...++++.. ++.. +.+.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 44555666667777889999999999997 455432 357899999998666677766655 2322 2221
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
.- ..........|-++|.+.|.+.+. . ...++.+++|||||||.-+- ..++ +..+....
T Consensus 130 iR-------fe~~~s~~Trik~mTdGiLlrei~--~-D~~Ls~ys~vIiDEaHERSl-----~tDi--lLgllk~~---- 188 (845)
T COG1643 130 IR-------FESKVSPRTRIKVMTDGILLREIQ--N-DPLLSGYSVVIIDEAHERSL-----NTDI--LLGLLKDL---- 188 (845)
T ss_pred EE-------eeccCCCCceeEEeccHHHHHHHh--h-CcccccCCEEEEcchhhhhH-----HHHH--HHHHHHHH----
Confidence 11 111123457899999999987665 2 33488999999999997642 1111 11111111
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchh-hhHhHHHHHHHHhhhccc
Q 005742 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS-YKKDFCQLIDIYTKKKKT 402 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 402 (679)
+...+++.++|.||||+.... +.++++-. +...+....++-.++|.-.. .... ....+...++.
T Consensus 189 ~~~rr~DLKiIimSATld~~r---fs~~f~~a-pvi~i~GR~fPVei~Y~~~~----~~d~~l~~ai~~~v~~------- 253 (845)
T COG1643 189 LARRRDDLKLIIMSATLDAER---FSAYFGNA-PVIEIEGRTYPVEIRYLPEA----EADYILLDAIVAAVDI------- 253 (845)
T ss_pred HhhcCCCceEEEEecccCHHH---HHHHcCCC-CEEEecCCccceEEEecCCC----CcchhHHHHHHHHHHH-------
Confidence 334455789999999996554 44444321 12222222222222221110 0000 11111111111
Q ss_pred cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCC
Q 005742 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (679)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (679)
T Consensus 254 -------------------------------------------------------------------------------- 253 (845)
T COG1643 254 -------------------------------------------------------------------------------- 253 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHH
Q 005742 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEF 558 (679)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F 558 (679)
.+. ...|.+|||.+..++.+..++.|.+ ....++++||.|+.+++.++++--
T Consensus 254 ----------------------~~~--~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~ 309 (845)
T COG1643 254 ----------------------HLR--EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPA 309 (845)
T ss_pred ----------------------hcc--CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCC
Confidence 111 1268999999999999999999997 357899999999999999988887
Q ss_pred hCCCeeEEEEecccccCcccccccEEEEeCC------------------CCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 559 ~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
..|+-+|++||++++.+|.||.|++||.-+. |-|-.+.-||.|||||- .+|.|+-+|+..+
T Consensus 310 ~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 310 PGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred CCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 7887779999999999999999999997665 44677889999999998 5999999999877
Q ss_pred CCccCCCCCCHHHHH
Q 005742 621 MPTLLPSRRSEDQTK 635 (679)
Q Consensus 621 ~~~~~~~~~~~~~~~ 635 (679)
.. -++.....|...
T Consensus 389 ~~-~~~~~t~PEIlr 402 (845)
T COG1643 389 FL-AFPEFTLPEILR 402 (845)
T ss_pred HH-hcccCCChhhhh
Confidence 66 344444444444
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=1.5e-21 Score=219.59 Aligned_cols=343 Identities=11% Similarity=0.059 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHc----------CCCEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHhcCC
Q 005742 174 LKNFQKEALSAWLA----------HHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSKHGV 238 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~----------g~d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~~~~ 238 (679)
++++|.+|+..+++ .+..+++++||||||++++..+. ...+++|||+|+.+|..|+.+.|.+++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 78899999988642 24799999999999987654432 2567999999999999999999999875
Q ss_pred ceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcC-ceEEEeecccccccCCCCchHHHHHHHHHHH
Q 005742 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (679)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~-~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~ 317 (679)
..... .................|+|+|.+++...+..........+ -.+||+||||+.... .+... ++.
T Consensus 319 ~~~~~--~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~------~~~~~--l~~ 388 (667)
T TIGR00348 319 DCAER--IESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG------ELAKN--LKK 388 (667)
T ss_pred CCCcc--cCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch------HHHHH--HHh
Confidence 32211 11112222222233468999999999764332111111111 138999999987421 11111 222
Q ss_pred hhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEe---cccCCCCcEEEEEecCCccchhh-hHhHHHHH
Q 005742 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL---TSFFRPNLRFSVKHSKTSSRASY-KKDFCQLI 393 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~r~~~~~~v~~~~~~~~~~~-~~~~~~~~ 393 (679)
.++ +..+++|||||.......-...++......+.. ....+..+...+........... ...+....
T Consensus 389 ~~p---------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 389 ALK---------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred hCC---------CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHH
Confidence 232 678999999996431111111221100011111 01111111111111100000000 00111111
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005742 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
+.+.......... .....+...+....
T Consensus 460 ~~~~~~~~~~~~~-------------------------------------------~~~~~l~~~~~~~~---------- 486 (667)
T TIGR00348 460 DEIFELLPERIRE-------------------------------------------ITKESLKEKLQKTK---------- 486 (667)
T ss_pred HHHHHhhhccccH-------------------------------------------HHHHHHHHHHHHHH----------
Confidence 1100000000000 00000000000000
Q ss_pred cccCCCCCCCCCCccchhhccccCch----HHHhhhccCCCC--CCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEe
Q 005742 474 EFYGHSPHRDRDTDRSFERTDLLNKP----AERLSMLQEPLE--DGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAY 542 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ll~~l~~~~~--~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~ 542 (679)
......... ..+++...+... .++++|||.++.+|..+.+.|.+. +..+..+
T Consensus 487 -----------------~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~ 549 (667)
T TIGR00348 487 -----------------KILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVM 549 (667)
T ss_pred -----------------hhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEe
Confidence 000000111 112222222111 479999999999999999998764 2455666
Q ss_pred cCCCCHH---------------------HHHHHHHHHhC-CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHh
Q 005742 543 NASLPKS---------------------QLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600 (679)
Q Consensus 543 hg~~~~~---------------------~R~~v~~~F~~-g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~ 600 (679)
++..+.+ ..+.++++|++ +.++|||.++++.+|+|.|.+++++..-+-.+ ..++|.+
T Consensus 550 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai 628 (667)
T TIGR00348 550 TGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAI 628 (667)
T ss_pred cCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHH
Confidence 6654332 23478889986 68999999999999999999999988876665 4589999
Q ss_pred hccccC
Q 005742 601 GRAGRD 606 (679)
Q Consensus 601 GRagR~ 606 (679)
||+.|.
T Consensus 629 ~R~nR~ 634 (667)
T TIGR00348 629 ARTNRI 634 (667)
T ss_pred HHhccc
Confidence 999993
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=4.8e-21 Score=212.80 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=102.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeC---
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG--- 588 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d--- 588 (679)
+.++||||++++.++.++++|.+.|+.+..+||++++.+|..+++.|+.|++.|||||+++++|+|+|++++||++|
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dadi 521 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK 521 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCCCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 589 --WPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 589 --~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
.|.+..+|+||+|||||. ..|.+++|++..
T Consensus 522 fG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 522 EGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred ccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 799999999999999998 689999998854
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.8e-21 Score=210.41 Aligned_cols=372 Identities=20% Similarity=0.218 Sum_probs=235.1
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHh-cCCceEEE
Q 005742 172 SSLKNFQKEALSAWLAH----HDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFL 243 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g----~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~ 243 (679)
..+++-|..|+..+... ...++.+.||||||.+|+-.+ +..|+.+|||+|-++|-.|+..+|+. |+.++.++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36889999999998765 578999999999999987444 46899999999999999999999987 68888888
Q ss_pred cCCCCcHH---HHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccC-CCCchHHHHHHHHHHHhh
Q 005742 244 GSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW-GHDFRPDYRRLSVLRENF 319 (679)
Q Consensus 244 ~~~~~~~~---~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~-g~~f~~~~~~l~~~~~~~ 319 (679)
+++-++.+ .+.+...+...|||+|-.-+ +..+.++.+|||||-|.-+-. ....+...+.+..++...
T Consensus 277 HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGEARVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred cccCChHHHHHHHHHHhcCCceEEEEechhh---------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 88877643 56667778999999997533 446788999999999987421 112566677787777776
Q ss_pred ccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchh---hhHhHHHHHHH
Q 005742 320 GANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRAS---YKKDFCQLIDI 395 (679)
Q Consensus 320 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~---~~~~~~~~~~~ 395 (679)
. ++++++-||||+-+......+- .-....+...+.+. .....+.......... +...+.+.+..
T Consensus 348 ~---------~~pvvLgSATPSLES~~~~~~g---~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 348 E---------NAPVVLGSATPSLESYANAESG---KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred h---------CCCEEEecCCCCHHHHHhhhcC---ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHH
Confidence 5 8999999999977655544211 00011111122211 1122222222111111 33333322221
Q ss_pred HhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCc--cccccccc
Q 005742 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV--DDWDVACG 473 (679)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 473 (679)
-.. .+.... -|+..-.. --....|+
T Consensus 416 ~l~---~geQ~l--------------------------------------------------lflnRRGys~~l~C~~Cg 442 (730)
T COG1198 416 TLE---RGEQVL--------------------------------------------------LFLNRRGYAPLLLCRDCG 442 (730)
T ss_pred HHh---cCCeEE--------------------------------------------------EEEccCCccceeecccCC
Confidence 111 111000 00000000 00123344
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCCCC------CCcEEEEeCchhHHHHHHHHHHhC--CCcEEEecCC
Q 005742 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE------DGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNAS 545 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~~~hg~ 545 (679)
.....+.|...-.... ....+....+--.+..+ ++..|+++-. .++++++.|... +.++..++++
T Consensus 443 ~v~~Cp~Cd~~lt~H~-----~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~D 515 (730)
T COG1198 443 YIAECPNCDSPLTLHK-----ATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSD 515 (730)
T ss_pred CcccCCCCCcceEEec-----CCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccc
Confidence 4444444442211111 11111111111111111 1234666543 566777777664 6788899988
Q ss_pred CCH--HHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCC------------CHHHHHHHhhccccCCCCce
Q 005742 546 LPK--SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------------SLEAYYQEAGRAGRDGHLAD 611 (679)
Q Consensus 546 ~~~--~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~------------s~~~y~Qr~GRagR~G~~g~ 611 (679)
... ..-+..++.|.+|+.+|||.|.+++-|.|+|++.+|...|... ...-+.|-.|||||.+++|.
T Consensus 516 tt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~ 595 (730)
T COG1198 516 TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGE 595 (730)
T ss_pred cccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCe
Confidence 754 3457889999999999999999999999999999988777642 25678999999999999999
Q ss_pred EEEEecCCCCCcc
Q 005742 612 CVLYANLSSMPTL 624 (679)
Q Consensus 612 ~~~l~~~~~~~~~ 624 (679)
+++-.-..+.+.+
T Consensus 596 VvIQT~~P~hp~i 608 (730)
T COG1198 596 VVIQTYNPDHPAI 608 (730)
T ss_pred EEEEeCCCCcHHH
Confidence 9997766665543
No 112
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=5.5e-22 Score=216.15 Aligned_cols=410 Identities=14% Similarity=0.081 Sum_probs=226.3
Q ss_pred CCCHHHHHHHHHHHc---CC-------CEEEEeecCCcchhhh--hhhhhc---cC-----CeEEEEcCchHHHHHHHHH
Q 005742 173 SLKNFQKEALSAWLA---HH-------DCLVLAATGSGKSLCF--QIPALL---TG-----KVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~---g~-------d~iv~a~TGsGKTl~~--~lp~l~---~~-----~~vLvl~Pt~~L~~q~~~~ 232 (679)
.++|+|++++..+.+ |. .+|++-.+|+|||+.. ++..++ +. .+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999999988653 22 4778889999999743 233333 44 789999995 899999999
Q ss_pred HHhcCC----ceEEEcCCCCcHHH-HHHH-----HcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 233 LSKHGV----TACFLGSGQPDNKV-EQKA-----LRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 233 l~~~~~----~~~~~~~~~~~~~~-~~~~-----~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
|.+|-+ ....+.+....... .... ..-...|++.+++.+.+..+ .+....++++|+||.|++.+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~----~il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR----KILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH----HHhcCCCCeEEECCCCCccchh
Confidence 999744 23333333332111 1111 11235789999998875444 3456689999999999996533
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccc
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~ 382 (679)
.-+...+.++ . ..++|+||+||-+++..+++..|++..+...-....++......+........
T Consensus 393 s~~~kaL~~l-------~---------t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 393 SLTLKALSSL-------K---------TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred hHHHHHHHhc-------C---------CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCc
Confidence 2233333333 1 45689999999999999999999886554433333333322222222111000
Q ss_pred -------hhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCc-----ccccccCCCCCCCCCCCCccCCCCC
Q 005742 383 -------ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSS-----MSEESRISPNIGDGYYDDEDVGNSP 450 (679)
Q Consensus 383 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (679)
..-.+.+..++..+..++.. .....+++...+-. -...-.. +..............+ .
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~-~il~k~LP~k~e~v-v~~n~t~~Q~~~~~~l~~~~~~~~~~~~--------~ 526 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTG-DILLKYLPGKYEYV-VFCNPTPIQKELYKKLLDSMKMRTLKGY--------A 526 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeeccc-chhhhhCCCceeEE-EEeCCcHHHHHHHHHHHHHHHhhhhhcc--------h
Confidence 01123344444433332222 11111111100000 0000000 0000000000000000 0
Q ss_pred CCcchhhhhhccCCccccccccccccCC-----CCCCCCCC---ccchhhccccCchHHHhhhccCCCC--CCcEEEEeC
Q 005742 451 MGKEMSVEFLENDSVDDWDVACGEFYGH-----SPHRDRDT---DRSFERTDLLNKPAERLSMLQEPLE--DGLTIIYVP 520 (679)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~IVF~~ 520 (679)
.........+.+. -+.+.+.+.... .+...... ...........+...+..++..... ..++.+..+
T Consensus 527 l~~~~~L~k~cnh---P~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isn 603 (776)
T KOG0390|consen 527 LELITKLKKLCNH---PSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISN 603 (776)
T ss_pred hhHHHHHHHHhcC---HHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEecc
Confidence 0000000000000 000000000000 00000000 0000111122344444444422211 124444445
Q ss_pred chhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCC---CeeEEEEecccccCcccccccEEEEeCCCCCHHHHH
Q 005742 521 TRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597 (679)
Q Consensus 521 t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g---~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~ 597 (679)
.+...+.+...+.-+|+.+..+||.|+..+|+.+++.|.+. ..-+|.+|-+.+.||++-..+.||.||++||+..-.
T Consensus 604 y~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~ 683 (776)
T KOG0390|consen 604 YTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQ 683 (776)
T ss_pred HHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHH
Confidence 56666666666667899999999999999999999999943 345788889999999999999999999999999999
Q ss_pred HHhhccccCCCCceEEEEe
Q 005742 598 QEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 598 Qr~GRagR~G~~g~~~~l~ 616 (679)
|.++||.|+||+..|++|-
T Consensus 684 QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 684 QAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred HHHHHhccCCCcceEEEEE
Confidence 9999999999999998863
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=9.9e-22 Score=211.06 Aligned_cols=345 Identities=17% Similarity=0.131 Sum_probs=195.5
Q ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEeecCCcchhhhhhhh--hc---cCCeEEEEcCchHHHHHHHHHHHhcCCc--
Q 005742 172 SSLKNFQKEALSAWL----AH-HDCLVLAATGSGKSLCFQIPA--LL---TGKVVVVISPLISLMHDQCSKLSKHGVT-- 239 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l----~g-~d~iv~a~TGsGKTl~~~lp~--l~---~~~~vLvl~Pt~~L~~q~~~~l~~~~~~-- 239 (679)
..+|.||..||..+. +| +.+|++|+||+|||.+++-.+ |. ..++||||+.+++|+.|....+..+-..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 368999999998765 34 359999999999997664333 32 4689999999999999999999887322
Q ss_pred eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHH---HHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHH
Q 005742 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL---QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLR 316 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~---~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~ 316 (679)
.+....+.. ..+.++|.++|++++..-+..- ...+....+++||||||||-. ++.-..+.
T Consensus 244 ~~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---------~~~~~~I~ 306 (875)
T COG4096 244 KMNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---------YSEWSSIL 306 (875)
T ss_pred ceeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---------HhhhHHHH
Confidence 222222211 1124799999999998655421 112344569999999999753 22222344
Q ss_pred HhhccccccccCCCCCEEEEEccCChhhHHHHHHHc-CCCCCceE----EecccCCCC--cEEEEEecCCccchhhhHhH
Q 005742 317 ENFGANNLKSLKFDIPLMALTATATIQVREDILKSL-HMSKGTKF----VLTSFFRPN--LRFSVKHSKTSSRASYKKDF 389 (679)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l-~~~~~~~~----~~~~~~r~~--~~~~v~~~~~~~~~~~~~~~ 389 (679)
.+|. .-+++|||||.......-...+ +.+-.... +...+.-|. +............ .
T Consensus 307 dYFd----------A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~---~--- 370 (875)
T COG4096 307 DYFD----------AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWK---P--- 370 (875)
T ss_pred HHHH----------HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcC---c---
Confidence 4443 3456679999765444333333 11100000 000111110 0000000000000 0
Q ss_pred HHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccc
Q 005742 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (679)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (679)
+..++......+.. +..+......
T Consensus 371 ----------------------------------~~~serek~~g~~i--~~dd~~~~~~-------------------- 394 (875)
T COG4096 371 ----------------------------------DAGSEREKLQGEAI--DEDDQNFEAR-------------------- 394 (875)
T ss_pred ----------------------------------Cccchhhhhhcccc--Cccccccccc--------------------
Confidence 00000000000000 0000000000
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchH-HHhhhccC--CC-CCCcEEEEeCchhHHHHHHHHHHhC-----CCcEE
Q 005742 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPA-ERLSMLQE--PL-EDGLTIIYVPTRKETLSIAKYLCGF-----GVKAA 540 (679)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~--~~-~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~ 540 (679)
+.+............. .+.+.+.. .. ..+++||||.+..+++.+...|... +--+.
T Consensus 395 ---------------d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~ 459 (875)
T COG4096 395 ---------------DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAM 459 (875)
T ss_pred ---------------ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEE
Confidence 0000000001111112 22233333 11 1469999999999999999999874 34566
Q ss_pred EecCCCCHHHHHHHHHHHhC--CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccC-------CCCce
Q 005742 541 AYNASLPKSQLRRVHTEFHE--NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD-------GHLAD 611 (679)
Q Consensus 541 ~~hg~~~~~~R~~v~~~F~~--g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~-------G~~g~ 611 (679)
.+.|+-.+. +..++.|.. .-.+|.|+.+++..|||+|.|..+|++-...|..-|.|++||+-|. |+...
T Consensus 460 ~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~ 537 (875)
T COG4096 460 KITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKE 537 (875)
T ss_pred EEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccce
Confidence 777765433 344555553 4457888889999999999999999999999999999999999994 22345
Q ss_pred EEEEecCCCCC
Q 005742 612 CVLYANLSSMP 622 (679)
Q Consensus 612 ~~~l~~~~~~~ 622 (679)
-+++++.-+.-
T Consensus 538 ~F~ifDf~~~~ 548 (875)
T COG4096 538 FFTIFDFVDNT 548 (875)
T ss_pred eEEEEEhhhhh
Confidence 56666554443
No 114
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=2.6e-21 Score=208.37 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh--hc---cCCeEEEEcCchHHHHHHHHHHHhcC----Cce-EE
Q 005742 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA--LL---TGKVVVVISPLISLMHDQCSKLSKHG----VTA-CF 242 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~--l~---~~~~vLvl~Pt~~L~~q~~~~l~~~~----~~~-~~ 242 (679)
.|..+|++.+..+-+++.++++|||.+|||++.-..+ .. ..+.+|+++|+++|+.|........- ... +.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 6888999999999999999999999999998643322 22 57899999999999999987765531 111 11
Q ss_pred EcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHH-HHHHHhhcCceEEEeeccccccc--CCCCchHHHHHHHHHHHhh
Q 005742 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENF 319 (679)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~-~~~~~~~~~~~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~~~ 319 (679)
+.+. -..+ .+.-.-.++|+|+.|+.+..++-. ........++++||+||+|.+.. .|. +++.+-.+ .
T Consensus 591 l~g~-ltqE--Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l-~~Eqll~l---i--- 660 (1330)
T KOG0949|consen 591 LLGD-LTQE--YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGL-LWEQLLLL---I--- 660 (1330)
T ss_pred hHhh-hhHH--hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccch-HHHHHHHh---c---
Confidence 1111 1111 111112489999999999886653 23444567899999999999965 232 22222222 1
Q ss_pred ccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005742 320 GANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 320 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
.+|+|+||||.. +...+..|++
T Consensus 661 ----------~CP~L~LSATig--N~~l~qkWln 682 (1330)
T KOG0949|consen 661 ----------PCPFLVLSATIG--NPNLFQKWLN 682 (1330)
T ss_pred ----------CCCeeEEecccC--CHHHHHHHHH
Confidence 789999999994 4445566654
No 115
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=3.4e-21 Score=202.41 Aligned_cols=308 Identities=18% Similarity=0.200 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHHHHHHHHHHHh-----cCCceEEE
Q 005742 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQCSKLSK-----HGVTACFL 243 (679)
Q Consensus 175 ~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L~~q~~~~l~~-----~~~~~~~~ 243 (679)
..+-.+.+..+.+++-+||+++||||||. ++|-++ ..+++-+.-|.|--|.-.+++... +|-.+..-
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 45556677778888899999999999997 666553 455699999999777766666654 23222221
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
.- ..........|.++|.++|++-+- ..-.+..+.+||+||||.-+-.. --.+.-|..+.+
T Consensus 131 IR-------Fed~ts~~TrikymTDG~LLRE~l---~Dp~LskYsvIIlDEAHERsl~T---DiLlGlLKki~~------ 191 (674)
T KOG0922|consen 131 IR-------FEDSTSKDTRIKYMTDGMLLREIL---KDPLLSKYSVIILDEAHERSLHT---DILLGLLKKILK------ 191 (674)
T ss_pred EE-------ecccCCCceeEEEecchHHHHHHh---cCCccccccEEEEechhhhhhHH---HHHHHHHHHHHh------
Confidence 10 001112347899999999986332 22347789999999999764210 001111222222
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhcccc
Q 005742 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTG 403 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (679)
.+++.+++.+|||+........+..- +...+-...+.-.+.|. .... ..|.+.....
T Consensus 192 ---~R~~LklIimSATlda~kfS~yF~~a----~i~~i~GR~fPVei~y~----~~p~-~dYv~a~~~t----------- 248 (674)
T KOG0922|consen 192 ---KRPDLKLIIMSATLDAEKFSEYFNNA----PILTIPGRTFPVEILYL----KEPT-ADYVDAALIT----------- 248 (674)
T ss_pred ---cCCCceEEEEeeeecHHHHHHHhcCC----ceEeecCCCCceeEEec----cCCc-hhhHHHHHHH-----------
Confidence 23367899999999766555544431 11112222222122211 1111 1121111111
Q ss_pred ccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCC
Q 005742 404 EKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRD 483 (679)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (679)
T Consensus 249 -------------------------------------------------------------------------------- 248 (674)
T KOG0922|consen 249 -------------------------------------------------------------------------------- 248 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHH
Q 005742 484 RDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----GV----KAAAYNASLPKSQLRRVH 555 (679)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~----~~~~~hg~~~~~~R~~v~ 555 (679)
+..+....+.+-+|||....++++.+++.|.+. +- -+.++||.|+.+++.+++
T Consensus 249 -------------------v~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF 309 (674)
T KOG0922|consen 249 -------------------VIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF 309 (674)
T ss_pred -------------------HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence 111111234778999999999999999999874 11 357899999999999999
Q ss_pred HHHhCCCeeEEEEecccccCcccccccEEEEeCC------------------CCCHHHHHHHhhccccCCCCceEEEEec
Q 005742 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 556 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
+.-..|..+|++||++++..|.|+.+.+||.-|+ |-|..+-.||.|||||.| +|.|+-+|+
T Consensus 310 ~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYt 388 (674)
T KOG0922|consen 310 DPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYT 388 (674)
T ss_pred cCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeee
Confidence 8888999999999999999999999999996654 457888999999999995 999999999
Q ss_pred CCCCCccCC
Q 005742 618 LSSMPTLLP 626 (679)
Q Consensus 618 ~~~~~~~~~ 626 (679)
.++...+..
T Consensus 389 e~~~~~~~~ 397 (674)
T KOG0922|consen 389 ESAYDKMPL 397 (674)
T ss_pred HHHHhhccc
Confidence 887755543
No 116
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=9.1e-23 Score=220.81 Aligned_cols=408 Identities=14% Similarity=0.147 Sum_probs=256.8
Q ss_pred CCCCHHHHHHHHHHHc---C-CCEEEEeecCCcchhhhh------hhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceE
Q 005742 172 SSLKNFQKEALSAWLA---H-HDCLVLAATGSGKSLCFQ------IPALLTGKVVVVISPLISLMHDQCSKLSKHGVTAC 241 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~---g-~d~iv~a~TGsGKTl~~~------lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~ 241 (679)
.++++||...+.|+.. + -|.|+..+||.|||...+ +-.....+..|||||+..| ..|..+|.+|...+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL-~NW~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL-VNWSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc-CCchhhcccccccee
Confidence 4899999999999763 2 478999999999996433 2222357889999999776 457778888865554
Q ss_pred EEcC-CCCcH--HHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHH-
Q 005742 242 FLGS-GQPDN--KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE- 317 (679)
Q Consensus 242 ~~~~-~~~~~--~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~- 317 (679)
.+.+ |.... ........+.++|+++|++-+.. + ...+.--+|.++||||.|+|.+ ...+|.....
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--d--k~lLsKI~W~yMIIDEGHRmKN-------a~~KLt~~L~t 540 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--D--KALLSKISWKYMIIDEGHRMKN-------AICKLTDTLNT 540 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--C--HHHHhccCCcceeecccccccc-------hhhHHHHHhhc
Confidence 4433 33321 22334445789999999997765 2 4455566899999999999965 2233333322
Q ss_pred hhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEe------cCCccchhhhHhHHH
Q 005742 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH------SKTSSRASYKKDFCQ 391 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~------~~~~~~~~~~~~~~~ 391 (679)
.+. ...++++|+||.++...++|..|++.-+..+.....+..++.-.... ............+++
T Consensus 541 ~y~---------~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHk 611 (1157)
T KOG0386|consen 541 HYR---------AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHK 611 (1157)
T ss_pred ccc---------chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHH
Confidence 222 45689999999999999999999987666554443333222111111 111111234556777
Q ss_pred HHHHHhhhccccccccccc-------cccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCC
Q 005742 392 LIDIYTKKKKTGEKEKSAI-------PQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (679)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (679)
+++.+..++.........- ....+......... +.+ ........ ........ --.+.
T Consensus 612 VLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~-m~~-------~g~l~~d~---~~g~~g~k-----~L~N~ 675 (1157)
T KOG0386|consen 612 VLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQ-MQN-------KGQLLKDT---AKGKKGYK-----PLFNT 675 (1157)
T ss_pred hhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHH-HHh-------CCCCCcCc---hhccccch-----hhhhH
Confidence 7776666655543332221 11111111000000 000 00000000 00000000 00112
Q ss_pred ccccccccccccCCCCCCCCCC--ccchhhccccCchHHHhhhccCCC--CCCcEEEEeCchhHHHHHHHHHHhCCCcEE
Q 005742 465 VDDWDVACGEFYGHSPHRDRDT--DRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540 (679)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~ 540 (679)
.-+...+|++.+.+........ ......+-...| ..+++.+...+ .+++++.|+......+.+.++|.-.++...
T Consensus 676 imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGK-fELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYl 754 (1157)
T KOG0386|consen 676 IMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGK-FELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYL 754 (1157)
T ss_pred hHHHHHhcCCchhhhhhccccccccChhHHHHhccH-HHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhhee
Confidence 2334455555555522211111 001122222223 33333332222 267999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhC---CCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005742 541 AYNASLPKSQLRRVHTEFHE---NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 541 ~~hg~~~~~~R~~v~~~F~~---g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
.++|....++|-..++.|.. .-+.+|.+|.+.+.|+|+...+.||.||..|++..+.|+..||+|.|+...|-++..
T Consensus 755 RLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 755 RLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred eecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 99999999999999999983 356789999999999999999999999999999999999999999999988877653
No 117
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.87 E-value=1.4e-21 Score=214.84 Aligned_cols=411 Identities=15% Similarity=0.124 Sum_probs=239.6
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEeecCCcchhhhhhhhh----c--------cCCeEEEEcCchHHHHHHHHHHHhc
Q 005742 173 SLKNFQKEALSAWL--A--HHDCLVLAATGSGKSLCFQIPAL----L--------TGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l--~--g~d~iv~a~TGsGKTl~~~lp~l----~--------~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
.+|.||++.++|+- + +=+.|+|..+|.|||+-.+..+. . .....|||||. .|+..|+.++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57899999999853 2 34899999999999985543322 1 23459999996 8999999999997
Q ss_pred CCc-eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHH
Q 005742 237 GVT-ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVL 315 (679)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~ 315 (679)
... .+..+-|.+..+...+-.....+|+|++++.+.+-...+ .-.+|.|+|+||-|-+.+.. ......+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l----~~~~wNYcVLDEGHVikN~k---tkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL----IKIDWNYCVLDEGHVIKNSK---TKLTKAVKQL 1126 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH----HhcccceEEecCcceecchH---HHHHHHHHHH
Confidence 322 233333444433333333345799999999887654433 23479999999999996532 2233333333
Q ss_pred HHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCc-----eEEecccCCCCcEEE-EEecCCcc--chhhhH
Q 005742 316 RENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGT-----KFVLTSFFRPNLRFS-VKHSKTSS--RASYKK 387 (679)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~-----~~~~~~~~r~~~~~~-v~~~~~~~--~~~~~~ 387 (679)
+ .-.++.||+||-+++..++|..+.+.-+. +.+...|.+|-..-. .+...... -....+
T Consensus 1127 ~-------------a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAle 1193 (1549)
T KOG0392|consen 1127 R-------------ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALE 1193 (1549)
T ss_pred h-------------hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHH
Confidence 3 34689999999999999999987643222 222223333322111 00000000 012234
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCC---cccccccCCCCCCCCCCCCccCCCCCCC--cc---hhhhh
Q 005742 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSS---SMSEESRISPNIGDGYYDDEDVGNSPMG--KE---MSVEF 459 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~ 459 (679)
.+++.+-.+..++...+.-...-++.+.+..=..... .+.+....... ......+.+....+ +. ...+|
T Consensus 1194 aLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~---~~~~~~d~~~~S~gt~~~HvFqaLqY 1270 (1549)
T KOG0392|consen 1194 ALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQ---CVSSQIDGGEESLGTDKTHVFQALQY 1270 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcc---ccccccccchhccCcchHHHHHHHHH
Confidence 4555555555555544433332222221110000000 00000000000 00000000000000 00 01111
Q ss_pred hccCCccccccccccccCC-CCCCCCC-------Cccchhh--ccccCchHHHhhhccCCC---------------CCCc
Q 005742 460 LENDSVDDWDVACGEFYGH-SPHRDRD-------TDRSFER--TDLLNKPAERLSMLQEPL---------------EDGL 514 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~--~~~~~~~~~ll~~l~~~~---------------~~~~ 514 (679)
+ ...|++.... ++.++.. ....... ....+|+..+-++|.+.- .++|
T Consensus 1271 l--------rKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHR 1342 (1549)
T KOG0392|consen 1271 L--------RKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHR 1342 (1549)
T ss_pred H--------HHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccce
Confidence 1 1112111100 0000000 0000111 123455555555555431 3569
Q ss_pred EEEEeCchhHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHhCC-CeeEE-EEecccccCcccccccEEEEeCC
Q 005742 515 TIIYVPTRKETLSIAKYLCGF---GVKAAAYNASLPKSQLRRVHTEFHEN-KLEVV-VATIAFGMGIDKLNVRRIIHYGW 589 (679)
Q Consensus 515 ~IVF~~t~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~R~~v~~~F~~g-~~~vL-VaT~~~~~GiDip~v~~VI~~d~ 589 (679)
+||||+-+...+.+.+-|-+. .+....++|..++.+|.++.++|.++ .++|| ++|-+++.|+|+...|.||+++-
T Consensus 1343 iLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEH 1422 (1549)
T KOG0392|consen 1343 ILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEH 1422 (1549)
T ss_pred eEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEec
Confidence 999999999999999988764 34456899999999999999999999 67765 56689999999999999999999
Q ss_pred CCCHHHHHHHhhccccCCCCceEEEE
Q 005742 590 PQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 590 p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
.||+-.-+|.+.||+|.||+..+-+|
T Consensus 1423 DWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1423 DWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred CCCchhhHHHHHHHHhhcCceeeeee
Confidence 99999999999999999999877654
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.86 E-value=2.3e-20 Score=212.17 Aligned_cols=318 Identities=19% Similarity=0.195 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHHcC---C-CEEEEeecCCcchhhhhhhhhc-------cCCeEEEEcCchHHHHHHHHHHHhcC-Cce
Q 005742 173 SLKNFQKEALSAWLAH---H-DCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLISLMHDQCSKLSKHG-VTA 240 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g---~-d~iv~a~TGsGKTl~~~lp~l~-------~~~~vLvl~Pt~~L~~q~~~~l~~~~-~~~ 240 (679)
..++.|..++..++.. . .+++.||||+|||.+++.+++. ...+++++.|++++++++.+.++... ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3489999999988753 4 7889999999999999988863 36899999999999999999998742 111
Q ss_pred EEEc--CCCCcHHHH-HH-------------HHcCCccEEEEChHHHHHHHH-HH-HHHHhhcCceEEEeecccccccCC
Q 005742 241 CFLG--SGQPDNKVE-QK-------------ALRGMYSIIYVCPETVIRLIK-PL-QRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 241 ~~~~--~~~~~~~~~-~~-------------~~~~~~~Ili~Tp~~l~~ll~-~~-~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
.... ++....... .. .......+.++||-....... .. ...+..-...++|+||+|.+....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 1111 121111100 00 001113455555554433111 00 000122235799999999986542
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecc---cCCCCcEEEEEecCC
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS---FFRPNLRFSVKHSKT 379 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~r~~~~~~v~~~~~ 379 (679)
....+..+....... +.++|++|||+|....+.+...+.-.......... ...+.+.....
T Consensus 355 --~~~~l~~~i~~l~~~----------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~---- 418 (733)
T COG1203 355 --MLAALLALLEALAEA----------GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER---- 418 (733)
T ss_pred --hHHHHHHHHHHHHhC----------CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc----
Confidence 233333333333222 78999999999999988888877533211111000 00000000000
Q ss_pred ccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhh
Q 005742 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (679)
.++.
T Consensus 419 ----------~~~~------------------------------------------------------------------ 422 (733)
T COG1203 419 ----------VDVE------------------------------------------------------------------ 422 (733)
T ss_pred ----------hhhh------------------------------------------------------------------
Confidence 0000
Q ss_pred hccCCccccccccccccCCCCCCCCCCccchhhccccCch-HHHhhhc-cCCCCCCcEEEEeCchhHHHHHHHHHHhCCC
Q 005742 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKP-AERLSML-QEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537 (679)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l-~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~ 537 (679)
... ....... .+.....+++|.|||++.|.++++.|+..+.
T Consensus 423 -------------------------------------~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~ 465 (733)
T COG1203 423 -------------------------------------DGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP 465 (733)
T ss_pred -------------------------------------hhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC
Confidence 000 0011111 1122356999999999999999999999888
Q ss_pred cEEEecCCCCHHHHHHHHHHHh----CCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCC--CCce
Q 005742 538 KAAAYNASLPKSQLRRVHTEFH----ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG--HLAD 611 (679)
Q Consensus 538 ~~~~~hg~~~~~~R~~v~~~F~----~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G--~~g~ 611 (679)
.++.+||.+...+|.+.++.++ .+...|+|||.+.+.|+|+. .+++|-==.| +.+.+||+||++|.| ..|.
T Consensus 466 ~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~ 542 (733)
T COG1203 466 KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGK 542 (733)
T ss_pred CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCc
Confidence 8999999999999998888554 57889999999999999994 6777765444 899999999999999 5677
Q ss_pred EEEEecCCCCC
Q 005742 612 CVLYANLSSMP 622 (679)
Q Consensus 612 ~~~l~~~~~~~ 622 (679)
++++......+
T Consensus 543 ~~v~~~~~~~~ 553 (733)
T COG1203 543 IYVYNDEERGP 553 (733)
T ss_pred eeEeecccCCC
Confidence 77776554433
No 119
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4.4e-21 Score=195.45 Aligned_cols=351 Identities=17% Similarity=0.124 Sum_probs=238.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~ 230 (679)
.+-+.+.++++. +.......+|.++++.+-+|++.++.-.|.+||++++.+.+. .+....+++.|++++++++.
T Consensus 270 ~~~E~~~~~~~~-~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 270 DFWESIRSLLNK-NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred hHHHHHHHHHhc-ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccC
Confidence 344445666653 355678899999999999999999999999999999987764 36778999999999999887
Q ss_pred HHHHhc------CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHH--HHHHHhhcCceEEEeeccccccc-C
Q 005742 231 SKLSKH------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP--LQRLAESRGIALFAIDEVHCVSK-W 301 (679)
Q Consensus 231 ~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~--~~~~~~~~~~~lvViDEaH~l~~-~ 301 (679)
+.+.-. .-.+++-.+++.....+....+.+.+++++.|.++..-.-. +.-...+-...+++.||+|.... .
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 765432 11233334444444556666777899999999988742221 11112233567899999998864 4
Q ss_pred CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCcc
Q 005742 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381 (679)
Q Consensus 302 g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~ 381 (679)
|......++++.++...|.+.. +.+++-.+||....++. .....++..-..+.....-...-.+.++......
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~------~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASI------NMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPP 501 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc------CcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCC
Confidence 4445677888888888776432 67788888887555432 2333444322211111111111112221110000
Q ss_pred chhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhc
Q 005742 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (679)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (679)
T Consensus 502 -------------------------------------------------------------------------------- 501 (1034)
T KOG4150|consen 502 -------------------------------------------------------------------------------- 501 (1034)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCC-CCcEEEEeCchhHHHHHHHHHHhC----C
Q 005742 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCGF----G 536 (679)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~IVF~~t~~~~~~l~~~L~~~----~ 536 (679)
... .....+..+..+++.+... +-|+|.||+.|+.|+-+....++. +
T Consensus 502 ----------------------~~~------~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~ 553 (1034)
T KOG4150|consen 502 ----------------------TSK------SEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETA 553 (1034)
T ss_pred ----------------------cch------hhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 000 0001111222222222222 459999999999999887765542 2
Q ss_pred ----CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceE
Q 005742 537 ----VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612 (679)
Q Consensus 537 ----~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~ 612 (679)
-.+..|.|+...++|+++..+.-.|++.-+|||++++.||||..+|.|++.++|.|+..+.|..|||||..+++.+
T Consensus 554 ~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 554 PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceE
Confidence 1356788999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEecCCCCC
Q 005742 613 VLYANLSSMP 622 (679)
Q Consensus 613 ~~l~~~~~~~ 622 (679)
+.++....++
T Consensus 634 vyva~~~PVD 643 (1034)
T KOG4150|consen 634 VYVAFLGPVD 643 (1034)
T ss_pred EEEEeccchh
Confidence 8877655443
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=3e-20 Score=202.47 Aligned_cols=297 Identities=20% Similarity=0.275 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
+...+.+++..|+ .|+..|+-....++.|+..-++||||.|||.--++.++ .+|+++++|+||+.|+.|.++++.+
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 3355566666688 89999999999999999999999999999964333332 4789999999999999999999998
Q ss_pred cC-----CceEEEcCCCCc----HHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC--
Q 005742 236 HG-----VTACFLGSGQPD----NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD-- 304 (679)
Q Consensus 236 ~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~-- 304 (679)
+. ..+-+++++.-. .....+...++++|+|+|.+-+..-.+.+ .--++++|++|.+|.++..+-.
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~~kFdfifVDDVDA~LkaskNvD 223 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SKLKFDFIFVDDVDAILKASKNVD 223 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cccCCCEEEEccHHHHHhccccHH
Confidence 74 333333444322 22334556788999999998665433322 2247999999999987542210
Q ss_pred -------chHH-H---HHHHHHHHhhccc-c---------------ccccCCCCCEEEEEccCChhh-HH-HHHHHcCCC
Q 005742 305 -------FRPD-Y---RRLSVLRENFGAN-N---------------LKSLKFDIPLMALTATATIQV-RE-DILKSLHMS 355 (679)
Q Consensus 305 -------f~~~-~---~~l~~~~~~~~~~-~---------------~~~~~~~~~~l~lSAT~~~~~-~~-~i~~~l~~~ 355 (679)
|... + ..+..++..+... . ...-....+++..|||..+.. .. .+...|+|.
T Consensus 224 riL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe 303 (1187)
T COG1110 224 RLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE 303 (1187)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc
Confidence 2211 1 0111111111100 0 001122456888899986542 22 333444443
Q ss_pred CCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCC
Q 005742 356 KGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPN 435 (679)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (679)
... -...++++++.|.
T Consensus 304 vG~--------------------------~~~~LRNIvD~y~-------------------------------------- 319 (1187)
T COG1110 304 VGS--------------------------GGEGLRNIVDIYV-------------------------------------- 319 (1187)
T ss_pred cCc--------------------------cchhhhheeeeec--------------------------------------
Confidence 110 0000111111100
Q ss_pred CCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcE
Q 005742 436 IGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLT 515 (679)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 515 (679)
........++++++. +.-.
T Consensus 320 -----------------------------------------------------------~~~~~e~~~elvk~l--G~Gg 338 (1187)
T COG1110 320 -----------------------------------------------------------ESESLEKVVELVKKL--GDGG 338 (1187)
T ss_pred -----------------------------------------------------------cCccHHHHHHHHHHh--CCCe
Confidence 002223333333333 4468
Q ss_pred EEEeCc---hhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEe----cccccCccccc-ccEEEEe
Q 005742 516 IIYVPT---RKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT----IAFGMGIDKLN-VRRIIHY 587 (679)
Q Consensus 516 IVF~~t---~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT----~~~~~GiDip~-v~~VI~~ 587 (679)
|||++. ++.+++++++|...|+++..+|+. .+..++.|..|++++||+. .++-||||+|. ++++|+|
T Consensus 339 LIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~ 413 (1187)
T COG1110 339 LIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFY 413 (1187)
T ss_pred EEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEe
Confidence 999999 999999999999999999999973 3788999999999999987 58999999996 7899999
Q ss_pred CCC
Q 005742 588 GWP 590 (679)
Q Consensus 588 d~p 590 (679)
|.|
T Consensus 414 GvP 416 (1187)
T COG1110 414 GVP 416 (1187)
T ss_pred cCC
Confidence 999
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=7.4e-20 Score=186.63 Aligned_cols=119 Identities=18% Similarity=0.292 Sum_probs=105.8
Q ss_pred chHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005742 498 KPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
..+.++..+.+.. .+.|+||-+-|++.++.|.++|.+.|+++.++|++...-+|.+++.+++.|.++|||.-+.+-+|+
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 3444444444433 256999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEeCCC-----CCHHHHHHHhhccccCCCCceEEEEec
Q 005742 577 DKLNVRRIIHYGWP-----QSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 577 Dip~v~~VI~~d~p-----~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
|+|.|.+|..+|.. .|-.+++|-+|||+|. -.|.+++|.+
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD 555 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYAD 555 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEch
Confidence 99999999998865 6889999999999997 5799999986
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=3.8e-19 Score=199.43 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=101.3
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC--
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW-- 589 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~-- 589 (679)
+.++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++|+|+|++++||++|.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ei 525 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADK 525 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcc
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ---CCCHHHHHHHhhccccCCCCceEEEEecC
Q 005742 590 ---PQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 590 ---p~s~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
|.+..+|+||+||+||. ..|.|++|++.
T Consensus 526 fG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 526 EGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred cccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 78999999999999996 78999999984
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.1e-19 Score=197.85 Aligned_cols=122 Identities=21% Similarity=0.189 Sum_probs=107.3
Q ss_pred chHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005742 498 KPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
|...+++.+.+.. .+.++||||+|+..++.|+++|...|+.+..+|+ .+.+|+..+..|+.+...|+|||++++||+
T Consensus 583 K~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGt 660 (1025)
T PRK12900 583 KYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGT 660 (1025)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCC
Confidence 4555666664432 3569999999999999999999999999999997 688999999999999999999999999999
Q ss_pred ccc---ccc-----EEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCCC
Q 005742 577 DKL---NVR-----RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 577 Dip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
||+ .|. +||.++.|.|...|.|++|||||.|.+|.+++|++..|.
T Consensus 661 DIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 661 DIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999 554 348999999999999999999999999999999987653
No 124
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=3.6e-19 Score=197.57 Aligned_cols=379 Identities=15% Similarity=0.171 Sum_probs=235.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc--------cCCeEEEEcCchHHHHHHHHHHHhc-----CCc
Q 005742 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL--------TGKVVVVISPLISLMHDQCSKLSKH-----GVT 239 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~--------~~~~vLvl~Pt~~L~~q~~~~l~~~-----~~~ 239 (679)
..+.++.+.+.++.++..+++.++||+|||. ++|.+. ...++++--|.|.-|--+++++.+- |-.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 4577888888899888999999999999997 444331 2567888999987777776666552 211
Q ss_pred eEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhh
Q 005742 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~ 319 (679)
+..-.... ........+++||.+.+++.+.. ...+.++.+||+||+|.-.-. .+|--.+.+.
T Consensus 251 VGYqvrl~-------~~~s~~t~L~fcTtGvLLr~L~~---~~~l~~vthiivDEVHER~i~-~DflLi~lk~------- 312 (924)
T KOG0920|consen 251 VGYQVRLE-------SKRSRETRLLFCTTGVLLRRLQS---DPTLSGVTHIIVDEVHERSIN-TDFLLILLKD------- 312 (924)
T ss_pred eeEEEeee-------cccCCceeEEEecHHHHHHHhcc---CcccccCceeeeeeEEEccCC-cccHHHHHHH-------
Confidence 11111111 11122378999999999887662 445788999999999987532 2343333322
Q ss_pred ccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhh
Q 005742 320 GANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399 (679)
Q Consensus 320 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (679)
+-...++.++++||||...+ .+..+++.. +.+....+. .++ ...|.+++.....
T Consensus 313 ----lL~~~p~LkvILMSAT~dae---~fs~YF~~~--pvi~i~grt-fpV-----------~~~fLEDil~~~~----- 366 (924)
T KOG0920|consen 313 ----LLPRNPDLKVILMSATLDAE---LFSDYFGGC--PVITIPGRT-FPV-----------KEYFLEDILSKTG----- 366 (924)
T ss_pred ----HhhhCCCceEEEeeeecchH---HHHHHhCCC--ceEeecCCC-cch-----------HHHHHHHHHHHhc-----
Confidence 11223589999999999644 344444421 111111111 110 0112222222110
Q ss_pred ccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCC
Q 005742 400 KKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHS 479 (679)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 479 (679)
......... .. ++... ........++.+
T Consensus 367 -~~~~~~~~~-~~---------------------~~~~~-------------~~~~~~~~~~~~---------------- 394 (924)
T KOG0920|consen 367 -YVSEDDSAR-SG---------------------PERSQ-------------LRLARLKLWEPE---------------- 394 (924)
T ss_pred -ccccccccc-cc---------------------cccCc-------------cccccchhcccc----------------
Confidence 000000000 00 00000 000000000000
Q ss_pred CCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC-------CCcEEEecCCCCHHHHH
Q 005742 480 PHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-------GVKAAAYNASLPKSQLR 552 (679)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~R~ 552 (679)
....-...+++.+.+....+.+|||.+...++..+.+.|... .+-+..+|+.|+..+++
T Consensus 395 --------------id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~ 460 (924)
T KOG0920|consen 395 --------------IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQ 460 (924)
T ss_pred --------------ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHH
Confidence 111234556666666666789999999999999999999642 35678999999999999
Q ss_pred HHHHHHhCCCeeEEEEecccccCcccccccEEEEeC--------CCC----------CHHHHHHHhhccccCCCCceEEE
Q 005742 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG--------WPQ----------SLEAYYQEAGRAGRDGHLADCVL 614 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d--------~p~----------s~~~y~Qr~GRagR~G~~g~~~~ 614 (679)
.+....-.|..+|++||++++..|.|++|-+||..+ +-. |...-.||+|||||. +.|.|+-
T Consensus 461 ~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~ 539 (924)
T KOG0920|consen 461 AVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYH 539 (924)
T ss_pred HhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEE
Confidence 999999999999999999999999999999999544 322 345568999999998 8999999
Q ss_pred EecCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhhhCCC
Q 005742 615 YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED 666 (679)
Q Consensus 615 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~cr~~~l~~~f~~~ 666 (679)
+|+......++......+.++..+..+ |++-..-...+.+.+|.+..+..
T Consensus 540 L~~~~~~~~~~~~~q~PEilR~pL~~l--~L~iK~l~~~~~~~fLskaldpP 589 (924)
T KOG0920|consen 540 LYTRSRYEKLMLAYQLPEILRTPLEEL--CLHIKVLEQGSIKAFLSKALDPP 589 (924)
T ss_pred eechhhhhhcccccCChHHHhChHHHh--hheeeeccCCCHHHHHHHhcCCC
Confidence 999998888777555566655544433 22222223344446666655543
No 125
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.7e-19 Score=185.97 Aligned_cols=306 Identities=17% Similarity=0.192 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-------cCCeEEEEcCchHHHHHHHHHHHh-cCCceEEEc
Q 005742 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLISLMHDQCSKLSK-HGVTACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-------~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~~ 244 (679)
..++|-.+.+.++.++.-+|+.++||||||. ++|-++ .++++-+.-|.|--+.-++.+..+ .|++-..-.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 5678888889999989999999999999997 777764 345588899999888887777665 333321111
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
|-.- ..........-|=++|.++|++-+ .....+.....|||||||.-.-.- --.+.-+..+.
T Consensus 343 GYsI---RFEdcTSekTvlKYMTDGmLlREf---L~epdLasYSViiiDEAHERTL~T---DILfgLvKDIa-------- 405 (902)
T KOG0923|consen 343 GYSI---RFEDCTSEKTVLKYMTDGMLLREF---LSEPDLASYSVIIVDEAHERTLHT---DILFGLVKDIA-------- 405 (902)
T ss_pred ceEE---EeccccCcceeeeeecchhHHHHH---hccccccceeEEEeehhhhhhhhh---hHHHHHHHHHH--------
Confidence 1000 011112234678899999998632 223457789999999999764210 11122222222
Q ss_pred cccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccc
Q 005742 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGE 404 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (679)
..+++..+|..|||+.......+ +. +..++..+-.|-++.+...... .+.|.+.....
T Consensus 406 -r~RpdLKllIsSAT~DAekFS~f---FD---dapIF~iPGRRyPVdi~Yt~~P---EAdYldAai~t------------ 463 (902)
T KOG0923|consen 406 -RFRPDLKLLISSATMDAEKFSAF---FD---DAPIFRIPGRRYPVDIFYTKAP---EADYLDAAIVT------------ 463 (902)
T ss_pred -hhCCcceEEeeccccCHHHHHHh---cc---CCcEEeccCcccceeeecccCC---chhHHHHHHhh------------
Confidence 22358899999999966654443 32 3444444444444333222111 11111111100
Q ss_pred cccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCC
Q 005742 405 KEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDR 484 (679)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 484 (679)
T Consensus 464 -------------------------------------------------------------------------------- 463 (902)
T KOG0923|consen 464 -------------------------------------------------------------------------------- 463 (902)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh---------CCCcEEEecCCCCHHHHHHHH
Q 005742 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---------FGVKAAAYNASLPKSQLRRVH 555 (679)
Q Consensus 485 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~R~~v~ 555 (679)
+..+.-..+.+-+|||....++.+...+.|.+ ..+-++++|+.++.+.+..++
T Consensus 464 ------------------VlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 464 ------------------VLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIF 525 (902)
T ss_pred ------------------heeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhc
Confidence 00011112357899999999988887777765 245689999999999999999
Q ss_pred HHHhCCCeeEEEEecccccCcccccccEEEEeCC------------------CCCHHHHHHHhhccccCCCCceEEEEec
Q 005742 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 556 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
+---.|..+|++||++++..|.|++|.+||.-++ |-|..+-.||+|||||.| +|.|+-+|+
T Consensus 526 ePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 526 EPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred CCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 8888999999999999999999999999996554 446677899999999996 999999998
Q ss_pred C
Q 005742 618 L 618 (679)
Q Consensus 618 ~ 618 (679)
.
T Consensus 605 ~ 605 (902)
T KOG0923|consen 605 A 605 (902)
T ss_pred h
Confidence 3
No 126
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=9.5e-19 Score=176.34 Aligned_cols=380 Identities=14% Similarity=0.120 Sum_probs=220.1
Q ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhhhhhhh--ccCCeEEEEcCchHHHHHHHHHHHhcC---CceEEEc
Q 005742 171 HSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPAL--LTGKVVVVISPLISLMHDQCSKLSKHG---VTACFLG 244 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~~lp~l--~~~~~vLvl~Pt~~L~~q~~~~l~~~~---~~~~~~~ 244 (679)
++.+-|+|++.+..+++ |..+++...+|.|||+-++..+. ......||+||. +|-..|.++|.+|- ..+.++.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~ 274 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVD 274 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEe
Confidence 44688999999998774 67899999999999987765443 357789999996 77888999988872 1222222
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
.+.... ..+.....|.|++++.+..+ ...+.-..+++||+||+|.+.+.. ....+.+..+.+.
T Consensus 275 ~~~D~~----~~~~t~~~v~ivSye~ls~l----~~~l~~~~~~vvI~DEsH~Lk~sk---tkr~Ka~~dllk~------ 337 (689)
T KOG1000|consen 275 KSSDPL----PDVCTSNTVAIVSYEQLSLL----HDILKKEKYRVVIFDESHMLKDSK---TKRTKAATDLLKV------ 337 (689)
T ss_pred cccCCc----cccccCCeEEEEEHHHHHHH----HHHHhcccceEEEEechhhhhccc---hhhhhhhhhHHHH------
Confidence 222211 01223357999999987643 334445569999999999996522 1122222223222
Q ss_pred cccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceE------EecccCCCCcEEEEEecCCccchhhhHhHHHH--HHHH
Q 005742 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF------VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL--IDIY 396 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~ 396 (679)
..++++||+||...-..+++..+..-+...+ -.+...-..+.+............+.--+.+. ++.+
T Consensus 338 -----akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRl 412 (689)
T KOG1000|consen 338 -----AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRL 412 (689)
T ss_pred -----hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4579999999977655555554432211111 00000111112222222222222222222211 1111
Q ss_pred hhh--ccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCcccccccccc
Q 005742 397 TKK--KKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGE 474 (679)
Q Consensus 397 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (679)
... .....+...+. .......+....+..+. ..+ ...........+....++..
T Consensus 413 K~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~----a~~-------~t~~~~~e~~~~~l~l~y~~------------ 468 (689)
T KOG1000|consen 413 KADVLKQLPPKRREVV-YVSGGRIDARMDDLVKA----AAD-------YTKVNSMERKHESLLLFYSL------------ 468 (689)
T ss_pred HHHHHhhCCccceEEE-EEcCCccchHHHHHHHH----hhh-------cchhhhhhhhhHHHHHHHHH------------
Confidence 110 11111211110 00000000000000000 000 00000000000000000000
Q ss_pred ccCCCCCCCCCCccchhhccccCchHHHhhhccC-----CCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHH
Q 005742 475 FYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE-----PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549 (679)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~ 549 (679)
--.-|...+.++|.. ..+..+.+|||......+.+...+++++++...++|..+..
T Consensus 469 -------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~ 529 (689)
T KOG1000|consen 469 -------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSH 529 (689)
T ss_pred -------------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCch
Confidence 011233344444444 12345999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CeeE-EEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 550 QLRRVHTEFHEN-KLEV-VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 550 ~R~~v~~~F~~g-~~~v-LVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
+|....+.|... +..| +++-.+++.|+++...+.||+..++|++.-++|.-.|++|.||+..+.++|
T Consensus 530 ~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 530 RRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred hHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 999999999944 5554 555678999999999999999999999999999999999999987665544
No 127
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.8e-19 Score=190.55 Aligned_cols=310 Identities=16% Similarity=0.172 Sum_probs=202.8
Q ss_pred HHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----------cCCeEEEEcCchHHHHHH----HHHHHhcCCceEEEc
Q 005742 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLISLMHDQ----CSKLSKHGVTACFLG 244 (679)
Q Consensus 180 ~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----------~~~~vLvl~Pt~~L~~q~----~~~l~~~~~~~~~~~ 244 (679)
+.+.+|-++--+|||++||||||. ++|-++ .++.+=|.-|.|--+--+ ..+|..++-.+.+..
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 455566656668999999999996 566542 256788888998664444 444555544443321
Q ss_pred -CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhcccc
Q 005742 245 -SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
-++ .......|.++|.+.|++-+. ..+-+.....|||||||.-+-...-+--.+.++..++..+..+.
T Consensus 341 Rfd~--------ti~e~T~IkFMTDGVLLrEi~---~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 341 RFDG--------TIGEDTSIKFMTDGVLLREIE---NDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred Eecc--------ccCCCceeEEecchHHHHHHH---HhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 111 123447899999998876444 45567889999999999764211112234566767776655322
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhcccc
Q 005742 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTG 403 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (679)
.+ -...+++.||||+.-....+-...+.+.++ ++.-...+-++.++.... ......
T Consensus 410 ~~--~kpLKLIIMSATLRVsDFtenk~LFpi~pP--likVdARQfPVsIHF~kr--T~~DYi------------------ 465 (1172)
T KOG0926|consen 410 CQ--IKPLKLIIMSATLRVSDFTENKRLFPIPPP--LIKVDARQFPVSIHFNKR--TPDDYI------------------ 465 (1172)
T ss_pred cc--cCceeEEEEeeeEEecccccCceecCCCCc--eeeeecccCceEEEeccC--CCchHH------------------
Confidence 11 114568999999965544433344444333 222222222333322110 000000
Q ss_pred ccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCC
Q 005742 404 EKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRD 483 (679)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (679)
T Consensus 466 -------------------------------------------------------------------------------- 465 (1172)
T KOG0926|consen 466 -------------------------------------------------------------------------------- 465 (1172)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh-----------------------------
Q 005742 484 RDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----------------------------- 534 (679)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----------------------------- 534 (679)
.........+.+.++.|-+|||+....+++.|.+.|++
T Consensus 466 -------------~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~ 532 (1172)
T KOG0926|consen 466 -------------AEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIG 532 (1172)
T ss_pred -------------HHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhc
Confidence 11122334556667889999999999999999999887
Q ss_pred ----------------------------------------------------------------------CCCcEEEecC
Q 005742 535 ----------------------------------------------------------------------FGVKAAAYNA 544 (679)
Q Consensus 535 ----------------------------------------------------------------------~~~~~~~~hg 544 (679)
...-|..+++
T Consensus 533 ~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYS 612 (1172)
T KOG0926|consen 533 DSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYS 612 (1172)
T ss_pred cCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhh
Confidence 0124667788
Q ss_pred CCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC--------CCCH----------HHHHHHhhccccC
Q 005742 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--------PQSL----------EAYYQEAGRAGRD 606 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~--------p~s~----------~~y~Qr~GRagR~ 606 (679)
-++.+++.++++.--.|..-++|||++++..+.||+|.+||..+. -..+ .+--||+|||||.
T Consensus 613 LLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt 692 (1172)
T KOG0926|consen 613 LLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT 692 (1172)
T ss_pred hcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC
Confidence 889999999999889999999999999999999999999996553 3333 3346999999999
Q ss_pred CCCceEEEEecCCC
Q 005742 607 GHLADCVLYANLSS 620 (679)
Q Consensus 607 G~~g~~~~l~~~~~ 620 (679)
| +|.|+-+|+..-
T Consensus 693 g-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 693 G-PGHCYRLYSSAV 705 (1172)
T ss_pred C-CCceeehhhhHH
Confidence 6 899999998653
No 128
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.83 E-value=2.3e-19 Score=187.15 Aligned_cols=116 Identities=24% Similarity=0.256 Sum_probs=103.7
Q ss_pred chHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhC-CCeeEEEEecccccCc
Q 005742 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~-g~~~vLVaT~~~~~Gi 576 (679)
.++.++..|+.. ++++|+|.+..+..+.+.++|..+++....++|.....+|+.++.+|.. ..+-+|++|.+++.||
T Consensus 1032 ~LDeLL~kLkae--gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1032 VLDELLPKLKAE--GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred eHHHHHHHhhcC--CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccc
Confidence 445555555443 6699999999999999999999999999999999999999999999985 4567899999999999
Q ss_pred ccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005742 577 DKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 577 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
|+...+.||+||..|++..-.|.+.||+|-|+...+.+|
T Consensus 1110 NLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1110 NLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred cccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 999999999999999999999999999999998776664
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1e-17 Score=181.02 Aligned_cols=379 Identities=19% Similarity=0.133 Sum_probs=229.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
++++.++.+|. .|++.|..+.-.+++|+ |+.+.||.|||+++.+|++. .|..|.|++|+--||.|.++++..
T Consensus 67 vREa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 44455566787 79999999998888774 88999999999999999874 799999999999999999988876
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHH-H---HHHHhhcCceEEEeecccccc-cC------
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCVS-KW------ 301 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~-~---~~~~~~~~~~lvViDEaH~l~-~~------ 301 (679)
+|+.+..+.++.+.. ...... .++|+++|...+. +.|+. + ......+.+.+.||||+|.++ +.
T Consensus 144 ~~LGLsvg~i~~~~~~~-err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 144 EALGLTVGWITEESTPE-ERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HhcCCEEEEECCCCCHH-HHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 488988887665543 222333 3799999998764 23321 1 122234678999999999873 11
Q ss_pred --CC-CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh--------------hh----HHHHHHHc----CCCC
Q 005742 302 --GH-DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI--------------QV----REDILKSL----HMSK 356 (679)
Q Consensus 302 --g~-~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~--------------~~----~~~i~~~l----~~~~ 356 (679)
|. .-...|..+..+...+....-.......+.+.||..-.. .. ...+...| -+.+
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 11 112455556555555433211112223445555542111 00 01110000 0111
Q ss_pred Cc--------eEEecccC-C--CCcEEE--------------------------------EEecCCccchhhhHhHHHHH
Q 005742 357 GT--------KFVLTSFF-R--PNLRFS--------------------------------VKHSKTSSRASYKKDFCQLI 393 (679)
Q Consensus 357 ~~--------~~~~~~~~-r--~~~~~~--------------------------------v~~~~~~~~~~~~~~~~~~~ 393 (679)
+. .++...+. | +.-+|. ....-.....+......++.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 11 11111110 0 000000 00011111234444555666
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005742 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
..|...-...+...........+
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~~d--------------------------------------------------------- 403 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDEAD--------------------------------------------------------- 403 (764)
T ss_pred HHhCCcEEECCCCCCceeecCCC---------------------------------------------------------
Confidence 66666644332211111100000
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005742 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
........|...+++.+.+.. .+.|+||.+.++...+.++..|.+.|+....+++.-...|-+
T Consensus 404 ----------------~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~ 467 (764)
T PRK12326 404 ----------------RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEAR 467 (764)
T ss_pred ----------------ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHH
Confidence 000001123444444444433 355999999999999999999999999999999875443322
Q ss_pred HHHHHHhCCCeeEEEEecccccCcccccc---------------cEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEec
Q 005742 553 RVHTEFHENKLEVVVATIAFGMGIDKLNV---------------RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~v---------------~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
-+-+.=+. -.|-|||++++||.||.-- =+||-...+.|..---|..|||||.|.+|.+..|++
T Consensus 468 IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 468 IIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred HHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 22222223 3689999999999998622 378888899999999999999999999999999998
Q ss_pred CCC
Q 005742 618 LSS 620 (679)
Q Consensus 618 ~~~ 620 (679)
..|
T Consensus 546 leD 548 (764)
T PRK12326 546 LED 548 (764)
T ss_pred cch
Confidence 765
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=8.4e-19 Score=176.80 Aligned_cols=319 Identities=16% Similarity=0.172 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHHHHc-C--CCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcC----CceEEEc
Q 005742 172 SSLKNFQKEALSAWLA-H--HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG----VTACFLG 244 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~-g--~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~----~~~~~~~ 244 (679)
..+||||...+..+.- | |..|++.|+|+|||++-+-++..-.+++|||+.+---+.||...|..|. -.++.+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 3789999999999884 2 5899999999999998887777789999999999888999999998872 3345555
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHH------HHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIR------LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~------ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
++.... ...++.|+|+|+.++.. --+....++.-+.|.++|+||+|.+- ...++++..+...
T Consensus 381 sd~Ke~------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP------A~MFRRVlsiv~a 448 (776)
T KOG1123|consen 381 SDAKER------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP------AKMFRRVLSIVQA 448 (776)
T ss_pred cccccc------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch------HHHHHHHHHHHHH
Confidence 544321 34567899999998862 11222345556789999999999884 3444444444333
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhh
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 398 (679)
. -.|+||||+..+.-. ..-|++ +.. |. .|..+..++...
T Consensus 449 H------------cKLGLTATLvREDdK--I~DLNF------LIG----PK--------------lYEAnWmdL~~k--- 487 (776)
T KOG1123|consen 449 H------------CKLGLTATLVREDDK--ITDLNF------LIG----PK--------------LYEANWMDLQKK--- 487 (776)
T ss_pred H------------hhccceeEEeecccc--ccccce------eec----ch--------------hhhccHHHHHhC---
Confidence 2 269999999554211 111111 110 00 011111111100
Q ss_pred hccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCC
Q 005742 399 KKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGH 478 (679)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (679)
+. + .-.+-..-.-++..+...+|+.........
T Consensus 488 ----Gh----I------------------------------A~VqCaEVWCpMt~eFy~eYL~~~t~kr~l--------- 520 (776)
T KOG1123|consen 488 ----GH----I------------------------------AKVQCAEVWCPMTPEFYREYLRENTRKRML--------- 520 (776)
T ss_pred ----Cc----e------------------------------eEEeeeeeecCCCHHHHHHHHhhhhhhhhe---------
Confidence 00 0 000000111223334444444322111110
Q ss_pred CCCCCCCCccchhhccccCchHHHhhhccCCC--CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 005742 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556 (679)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~ 556 (679)
....++.+....++|.+.. .+.++|||..+.-...+.|-.|. -..++|..++.+|.++++
T Consensus 521 -------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILq 582 (776)
T KOG1123|consen 521 -------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQ 582 (776)
T ss_pred -------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHH
Confidence 0111222223333333222 35699999998877777666663 356789999999999999
Q ss_pred HHh-CCCeeEEEEecccccCcccccccEEEEeCCC-CCHHHHHHHhhccccCCC
Q 005742 557 EFH-ENKLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGH 608 (679)
Q Consensus 557 ~F~-~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~G~ 608 (679)
.|+ +.+++.+.-+.++...||+|..+++|+.... .|-.+=.||.||.-|+-+
T Consensus 583 nFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 583 NFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred hcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 999 5578899999999999999999999987765 456777899999988743
No 131
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.80 E-value=1e-17 Score=194.74 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCccccccc--EEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVR--RII 585 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~--~VI 585 (679)
++++|||+++.+..+.+++.|.. .++. .+..+.. ..|..+++.|++++..||++|+.+.+|||+|... .||
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~vi 750 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLV 750 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEE
Confidence 57999999999999999999975 2333 3333333 5789999999999999999999999999999765 567
Q ss_pred EeCCCCC------------------------------HHHHHHHhhccccCCCCceEEEEecC
Q 005742 586 HYGWPQS------------------------------LEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 586 ~~d~p~s------------------------------~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
...+|.. +..+.|.+||.-|.....-++++++.
T Consensus 751 I~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 751 IPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 7776631 23457999999998765445555553
No 132
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.80 E-value=7.4e-19 Score=191.55 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=105.2
Q ss_pred cCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCC--CeeEEEEeccc
Q 005742 496 LNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN--KLEVVVATIAF 572 (679)
Q Consensus 496 ~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g--~~~vLVaT~~~ 572 (679)
..|+..|.-+|.... .++|+|||+++.+..+.|..+|.-+|+....++|...-++|+..+++|..+ -+.++++|...
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 345555544444432 356999999999999999999999999999999999999999999999966 45789999999
Q ss_pred ccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005742 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 573 ~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
+.|||+...|.||+||..||+.-..|...|++|.|+...+.+|
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 9999999999999999999999999999999999998877665
No 133
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.3e-17 Score=173.78 Aligned_cols=300 Identities=16% Similarity=0.180 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh------ccCCeEEEEcCchHHHHHHHHHHHhc-CC----ceEEEc
Q 005742 176 NFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPLISLMHDQCSKLSKH-GV----TACFLG 244 (679)
Q Consensus 176 ~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l------~~~~~vLvl~Pt~~L~~q~~~~l~~~-~~----~~~~~~ 244 (679)
..+.+.+..+.+++-++++++||||||. ++|-+ ...+.+-+.-|.|.-+.-+++++..- +. .+....
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 3444455555567778999999999997 44443 25678888899998888888777652 21 111100
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~ 324 (679)
- ..........|-++|-+.|++-. -..-.+.....||+||||.-+- + -.-.+.-+......
T Consensus 437 R-------FEdvT~~~T~IkymTDGiLLrEs---L~d~~L~kYSviImDEAHERsl-N--tDilfGllk~~lar------ 497 (1042)
T KOG0924|consen 437 R-------FEDVTSEDTKIKYMTDGILLRES---LKDRDLDKYSVIIMDEAHERSL-N--TDILFGLLKKVLAR------ 497 (1042)
T ss_pred E-------eeecCCCceeEEEeccchHHHHH---hhhhhhhheeEEEechhhhccc-c--hHHHHHHHHHHHHh------
Confidence 0 00111234679999999887521 1223466799999999997642 1 01111122222222
Q ss_pred cccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccc
Q 005742 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGE 404 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (679)
+.+.+++..|||+.... +..+++.. +...+-...+...+.+ ...... +.+...+.
T Consensus 498 ---RrdlKliVtSATm~a~k---f~nfFgn~-p~f~IpGRTyPV~~~~----~k~p~e----DYVeaavk---------- 552 (1042)
T KOG0924|consen 498 ---RRDLKLIVTSATMDAQK---FSNFFGNC-PQFTIPGRTYPVEIMY----TKTPVE----DYVEAAVK---------- 552 (1042)
T ss_pred ---hccceEEEeeccccHHH---HHHHhCCC-ceeeecCCccceEEEe----ccCchH----HHHHHHHh----------
Confidence 22788999999995544 44555421 1111111111111111 111110 00000000
Q ss_pred cccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCC
Q 005742 405 KEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDR 484 (679)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 484 (679)
T Consensus 553 -------------------------------------------------------------------------------- 552 (1042)
T KOG0924|consen 553 -------------------------------------------------------------------------------- 552 (1042)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----------CCCcEEEecCCCCHHHHHHH
Q 005742 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----------FGVKAAAYNASLPKSQLRRV 554 (679)
Q Consensus 485 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----------~~~~~~~~hg~~~~~~R~~v 554 (679)
+ .-.+....+.+-+|||....+.++.....+.. .++.+..+++.|+++-+.++
T Consensus 553 ----------------q-~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki 615 (1042)
T KOG0924|consen 553 ----------------Q-AVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI 615 (1042)
T ss_pred ----------------h-heEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh
Confidence 0 00011112367899999988766655555443 36789999999999999999
Q ss_pred HHHHhCCCeeEEEEecccccCcccccccEEEEeCC------------------CCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 555 HTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 555 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
++.-..|..+++|||++++..|.||.+.+||..++ |-|-..--||.|||||.| +|.|+-+|
T Consensus 616 Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlY 694 (1042)
T KOG0924|consen 616 FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLY 694 (1042)
T ss_pred cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeeh
Confidence 99888999999999999999999999999997665 556677789999999995 99999999
Q ss_pred cCC
Q 005742 617 NLS 619 (679)
Q Consensus 617 ~~~ 619 (679)
+..
T Consensus 695 Te~ 697 (1042)
T KOG0924|consen 695 TED 697 (1042)
T ss_pred hhh
Confidence 874
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.7e-17 Score=182.15 Aligned_cols=133 Identities=19% Similarity=0.160 Sum_probs=96.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
++++-++.+|. .|+++|..+--.+.+ .-|+.+.||.|||+++.+|++ ..|..|-|++|+-.||.|.++++..+
T Consensus 71 vrEa~~R~lGm-~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 71 AREAGKRVMGM-RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHHHHHHHhCC-CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 34444456675 688888877555554 459999999999999999987 47999999999999999999988873
Q ss_pred ---CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHH----HHHHHhhcCceEEEeecccccc
Q 005742 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP----LQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~----~~~~~~~~~~~lvViDEaH~l~ 299 (679)
|+.+.++.++.+... .+.... ++|+|+|...+. +.|.. .....-.+.+.++||||+|.++
T Consensus 148 ~~lGl~v~~i~~~~~~~e-rr~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEE-KRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccCCEEEEECCCCCHHH-HHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 888888876654432 223322 799999998762 22221 0112234789999999999873
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=6.8e-18 Score=151.34 Aligned_cols=118 Identities=34% Similarity=0.505 Sum_probs=107.8
Q ss_pred chHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005742 498 KPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
+...+...+.+.. ..+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|+++...||++|.++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 4555555555544 467999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005742 577 DKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 577 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
|+|.+++||+++.|++...|+|++||++|.|+.|.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999988764
No 136
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.9e-18 Score=137.58 Aligned_cols=78 Identities=33% Similarity=0.544 Sum_probs=75.7
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCC
Q 005742 530 KYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (679)
Q Consensus 530 ~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G 607 (679)
++|...++.+..+||++++++|+.+++.|+++...|||||+++++|||+|.+++||++++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.74 E-value=3.9e-17 Score=157.56 Aligned_cols=169 Identities=31% Similarity=0.446 Sum_probs=124.5
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc---c--CCeEEEEcCchHHHHHHHHHHHhcC----C
Q 005742 169 FGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLSKHG----V 238 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~---~--~~~vLvl~Pt~~L~~q~~~~l~~~~----~ 238 (679)
+++.+|+++|.+++..++.. +++++.+|||+|||.++..+++. . ..++||++|++.++.|+...+.+.. .
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 46778999999999999988 99999999999999988777763 2 3789999999999999999998864 2
Q ss_pred ceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
......++............+..+|+++|++.+.+.+. .......+++++|+||||.+.... +...+..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~--~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~--- 156 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE--NDLLELSNVDLVILDEAHRLLDGG--FGDQLEKLLKL--- 156 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHH--cCCcCHhHCCEEEEECHHHHhcCC--cHHHHHHHHHh---
Confidence 33334444433333333444444999999999987666 222455678999999999997532 45555555322
Q ss_pred hccccccccCCCCCEEEEEccCChhhHHHHHHHc
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l 352 (679)
++...+++++||||+..........+
T Consensus 157 --------~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 157 --------LPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred --------CCccceEEEEecCCchhHHHHHHHhc
Confidence 23378899999999876666555544
No 138
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=1.1e-15 Score=175.29 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=77.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccc--cccEEEEeCC
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL--NVRRIIHYGW 589 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip--~v~~VI~~d~ 589 (679)
+++++|++++.+..+.+++.|....+.+ ...|.-. .+..++++|++++-.||++|..+.+|||+| ....||...+
T Consensus 647 ~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kL 723 (820)
T PRK07246 647 QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRL 723 (820)
T ss_pred CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecC
Confidence 6899999999999999999997665444 4444222 256689999998889999999999999997 3555666666
Q ss_pred CC----C--------------------------HHHHHHHhhccccCCCCceEEEEecCC
Q 005742 590 PQ----S--------------------------LEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 590 p~----s--------------------------~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
|- + ...+.|.+||.=|....--++++++..
T Consensus 724 PF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 724 PFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 52 1 234689999999986543345555543
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=2.3e-15 Score=165.18 Aligned_cols=377 Identities=17% Similarity=0.172 Sum_probs=225.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
++++..+.+|. .|++.|..+--.+..| -|..+.||-|||+++.+|++. .|+.|-|++..--|+..-++++..
T Consensus 67 vREA~~R~lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 44555566787 7899998887776666 489999999999999999974 688888888888997655555544
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHHH----HHHHhhcCceEEEeecccccc-c-------
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKPL----QRLAESRGIALFAIDEVHCVS-K------- 300 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~~----~~~~~~~~~~lvViDEaH~l~-~------- 300 (679)
+|+.+.++.++..... .+.. -.++|+++|...+. +.|+.. ....-.+.+.+.||||+|.++ +
T Consensus 144 ~fLGLsvG~i~~~~~~~~-rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 144 NFLGLSVGINKANMDPNL-KREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHhCCceeeeCCCCChHH-HHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 5899888776554432 2222 24799999998764 333311 112234778999999999873 1
Q ss_pred ---CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHH-------------HHHHc--------CCCC
Q 005742 301 ---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRED-------------ILKSL--------HMSK 356 (679)
Q Consensus 301 ---~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~-------------i~~~l--------~~~~ 356 (679)
........|..+..+...+....+. .....+.+.||..-....... +..++ .+..
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~-iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~r 299 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYK-IDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKE 299 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceE-EecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhc
Confidence 1112234666666665554332111 122334455554221111110 00010 0111
Q ss_pred C--------ceEEecccC-C--CCcEEE--------------------------------EEecCCccchhhhHhHHHHH
Q 005742 357 G--------TKFVLTSFF-R--PNLRFS--------------------------------VKHSKTSSRASYKKDFCQLI 393 (679)
Q Consensus 357 ~--------~~~~~~~~~-r--~~~~~~--------------------------------v~~~~~~~~~~~~~~~~~~~ 393 (679)
+ ..++...+. | +.-+|. ....-....++....-.++.
T Consensus 300 d~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~ 379 (925)
T PRK12903 300 DVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (925)
T ss_pred CCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH
Confidence 1 011111110 0 000000 00111111233334445666
Q ss_pred HHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccc
Q 005742 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (679)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (679)
..|...-...+.....+.....+.
T Consensus 380 ~iY~l~Vv~IPTnkP~~R~D~~d~-------------------------------------------------------- 403 (925)
T PRK12903 380 DIYNMRVNVVPTNKPVIRKDEPDS-------------------------------------------------------- 403 (925)
T ss_pred HHhCCCEEECCCCCCeeeeeCCCc--------------------------------------------------------
Confidence 777666444332221111110000
Q ss_pred cccCCCCCCCCCCccchhhccccCchHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 005742 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (679)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~ 552 (679)
.......|...+++.+.+.. .+.|+||.|.+++.++.|+.+|.+.|+....+++.-. +++
T Consensus 404 -----------------iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~E 464 (925)
T PRK12903 404 -----------------IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--ARE 464 (925)
T ss_pred -----------------EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhH
Confidence 00011123344444444433 3559999999999999999999999999999998643 333
Q ss_pred HHHHHHhCC-CeeEEEEecccccCccccccc--------EEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 553 RVHTEFHEN-KLEVVVATIAFGMGIDKLNVR--------RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 553 ~v~~~F~~g-~~~vLVaT~~~~~GiDip~v~--------~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
.-+-. ..| .-.|.|||++++||.||.--. +||....|.|..---|..||+||.|.+|.+..|++..|
T Consensus 465 A~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 465 AEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 33322 445 457999999999999996432 89999999999888999999999999999999998765
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=5.6e-17 Score=166.19 Aligned_cols=267 Identities=23% Similarity=0.272 Sum_probs=175.8
Q ss_pred CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEEC
Q 005742 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 267 (679)
.+-++-++||.||||.-++ --+...+..++.-|.|-|+.++++++.+.|+.+-.++|........ . ...++.+-||
T Consensus 191 RkIi~H~GPTNSGKTy~AL-qrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~-~--~~~a~hvScT 266 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRAL-QRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLD-N--GNPAQHVSCT 266 (700)
T ss_pred heEEEEeCCCCCchhHHHH-HHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCC-C--CCcccceEEE
Confidence 3446678899999997653 2334578889999999999999999999999988777643322110 0 1236788888
Q ss_pred hHHHHHHHHHHHHHHhhcCceEEEeeccccccc--CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhH
Q 005742 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345 (679)
Q Consensus 268 p~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~--~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 345 (679)
-|++.- -..++..||||.+.|.+ +| |...-.-|+..... +-|.+-| .+.
T Consensus 267 VEM~sv----------~~~yeVAViDEIQmm~Dp~RG--wAWTrALLGl~AdE---------------iHLCGep--svl 317 (700)
T KOG0953|consen 267 VEMVSV----------NTPYEVAVIDEIQMMRDPSRG--WAWTRALLGLAADE---------------IHLCGEP--SVL 317 (700)
T ss_pred EEEeec----------CCceEEEEehhHHhhcCcccc--hHHHHHHHhhhhhh---------------hhccCCc--hHH
Confidence 886631 12489999999999975 55 33333333222111 1122222 233
Q ss_pred HHHHHHcCCCCCceEEecccCC-CCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCC
Q 005742 346 EDILKSLHMSKGTKFVLTSFFR-PNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSS 424 (679)
Q Consensus 346 ~~i~~~l~~~~~~~~~~~~~~r-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (679)
..+.+.+.+..+...+. .+.| .++
T Consensus 318 dlV~~i~k~TGd~vev~-~YeRl~pL------------------------------------------------------ 342 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVR-EYERLSPL------------------------------------------------------ 342 (700)
T ss_pred HHHHHHHhhcCCeeEEE-eecccCcc------------------------------------------------------
Confidence 33333332222211111 1111 000
Q ss_pred cccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhh
Q 005742 425 SMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLS 504 (679)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 504 (679)
...+..+.
T Consensus 343 ------------------------------------------------------------------------~v~~~~~~ 350 (700)
T KOG0953|consen 343 ------------------------------------------------------------------------VVEETALG 350 (700)
T ss_pred ------------------------------------------------------------------------eehhhhhh
Confidence 00011122
Q ss_pred hccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHhC--CCeeEEEEecccccCcccccc
Q 005742 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLPKSQLRRVHTEFHE--NKLEVVVATIAFGMGIDKLNV 581 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~-~~~~hg~~~~~~R~~v~~~F~~--g~~~vLVaT~~~~~GiDip~v 581 (679)
.+.... .|-+| .|-+++..-.+...+.+.|.. +++++|+++++.|.+....|.+ ++++||||||+.+||+|+ ++
T Consensus 351 sl~nlk-~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~I 427 (700)
T KOG0953|consen 351 SLSNLK-PGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NI 427 (700)
T ss_pred hhccCC-CCCeE-EEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ce
Confidence 222222 34333 345678888888889888776 9999999999999999999996 999999999999999999 78
Q ss_pred cEEEEeCCC---------CCHHHHHHHhhccccCCCC---ceEEEEec
Q 005742 582 RRIIHYGWP---------QSLEAYYQEAGRAGRDGHL---ADCVLYAN 617 (679)
Q Consensus 582 ~~VI~~d~p---------~s~~~y~Qr~GRagR~G~~---g~~~~l~~ 617 (679)
+.||+|++- -+..+..|.+|||||.|.. |.+.++..
T Consensus 428 rRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 428 RRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred eEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999999873 4578899999999998753 88888764
No 141
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=1.1e-16 Score=167.92 Aligned_cols=415 Identities=16% Similarity=0.150 Sum_probs=234.1
Q ss_pred CCCHHHHHHHHHHHc-----CCCEEEEeecCCcchhhhhhhhhc-------------cCCeEEEEcCchHHHHHHHHHHH
Q 005742 173 SLKNFQKEALSAWLA-----HHDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVISPLISLMHDQCSKLS 234 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-----g~d~iv~a~TGsGKTl~~~lp~l~-------------~~~~vLvl~Pt~~L~~q~~~~l~ 234 (679)
++-|+|..++.|++- +...|+....|.|||++.+-.++. ....+|||||- +|+.||..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 578999999999773 346899999999999976555542 12259999995 89999999887
Q ss_pred hc----CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHH----HHHHH--HHHHhhcCceEEEeecccccccCCCC
Q 005742 235 KH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR----LIKPL--QRLAESRGIALFAIDEVHCVSKWGHD 304 (679)
Q Consensus 235 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~----ll~~~--~~~~~~~~~~lvViDEaH~l~~~g~~ 304 (679)
+. .+++.+++|.. .++...+.+ ..++|||+|+.-+.+ -+... ...+..-.|..||+||||.+.+....
T Consensus 404 ~rl~~n~LsV~~~HG~n-~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq 481 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPN-KREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQ 481 (901)
T ss_pred HHHhhcceEEEEecCCc-cccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchh
Confidence 74 45555555443 233333333 458999999986654 11100 01111224889999999999764422
Q ss_pred chHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEeccc-------------------
Q 005742 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF------------------- 365 (679)
Q Consensus 305 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~------------------- 365 (679)
-...+.+| . ..-.-++|+||.++..-+++..+.|.....+--..+
T Consensus 482 ~S~AVC~L---~-------------a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll 545 (901)
T KOG4439|consen 482 CSKAVCKL---S-------------AKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLL 545 (901)
T ss_pred HHHHHHHH---h-------------hcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhh
Confidence 23333333 1 345789999999998888777665433222210000
Q ss_pred --------------------CCC--CcEEEEEecCCccchhh---hHhHHHHHHHHhhhcccccccccccccc-CCCccC
Q 005742 366 --------------------FRP--NLRFSVKHSKTSSRASY---KKDFCQLIDIYTKKKKTGEKEKSAIPQD-LDDQSD 419 (679)
Q Consensus 366 --------------------~r~--~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 419 (679)
.-| ++.+............| ...-..+...+...+....+...+.... +...
T Consensus 546 ~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~-- 623 (901)
T KOG4439|consen 546 TKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGG-- 623 (901)
T ss_pred hhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccc--
Confidence 011 22222222111111111 1222222223222222222222111100 0000
Q ss_pred cCCCCcccccccCCCCC-----------------------------CCCCCCC---ccCCCCCCCcchhhhhhccCCccc
Q 005742 420 TSSSSSMSEESRISPNI-----------------------------GDGYYDD---EDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 420 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
.........+.+.. ....... ...+......+ .++...+.+
T Consensus 624 ---~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~----~~e~~~l~e 696 (901)
T KOG4439|consen 624 ---HDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEE----QLEEDNLAE 696 (901)
T ss_pred ---cccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhh----hhhhhHHHh
Confidence 00000000000000 0000000 00000000000 000000000
Q ss_pred cccccccccCCCC---CCCCCCccchhhccccCchHHHhhhccCCC--CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEe
Q 005742 468 WDVACGEFYGHSP---HRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (679)
Q Consensus 468 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~ 542 (679)
....-.-...... .+....++.++....+.+....++.+.... ...+++|..+-......+...|.+.|+....+
T Consensus 697 l~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si 776 (901)
T KOG4439|consen 697 LEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSI 776 (901)
T ss_pred hhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeee
Confidence 0000000000001 111223444555556666666666665552 34588888888888999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHh--CCCeeE-EEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005742 543 NASLPKSQLRRVHTEFH--ENKLEV-VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 543 hg~~~~~~R~~v~~~F~--~g~~~v-LVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
||....++|+.+++.|. +|..+| |++-.+.+-|+|+-..+++|..|+.|++.-=.|...|.-|.||+..++++
T Consensus 777 ~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 777 TGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 99999999999999997 454555 55568899999999999999999999999999999999999999998875
No 142
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.71 E-value=3.2e-16 Score=158.08 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=101.7
Q ss_pred CchHHHhhh---ccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCC-Cee-EEEEecc
Q 005742 497 NKPAERLSM---LQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN-KLE-VVVATIA 571 (679)
Q Consensus 497 ~~~~~ll~~---l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g-~~~-vLVaT~~ 571 (679)
.|.+.+.+. |.+.....+.|||.+.....+-+.-.|.+.|+.++.+.|+|++..|...++.|+++ .++ +||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 455555444 34444445899999999999999999999999999999999999999999999976 555 4667789
Q ss_pred cccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCC--ceEEEEec
Q 005742 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL--ADCVLYAN 617 (679)
Q Consensus 572 ~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~--g~~~~l~~ 617 (679)
++.-+|+...+.|+.+|+=|++..-.|...|.+|.||. =.++.|+-
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i 747 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI 747 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh
Confidence 99999999999999999999999999999999999985 44555654
No 143
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.69 E-value=3.3e-15 Score=160.75 Aligned_cols=128 Identities=18% Similarity=0.126 Sum_probs=111.9
Q ss_pred cchhhccccCchHHHhhhccCCCCCC-cEEEEeCchhHHHHHHHHHHh----------------------CCCcEEEecC
Q 005742 488 RSFERTDLLNKPAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCG----------------------FGVKAAAYNA 544 (679)
Q Consensus 488 ~~~~~~~~~~~~~~ll~~l~~~~~~~-~~IVF~~t~~~~~~l~~~L~~----------------------~~~~~~~~hg 544 (679)
........+.|+..|+++|.....-| ++|||.++....+-|..+|.. .|.....++|
T Consensus 1117 ~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDG 1196 (1567)
T KOG1015|consen 1117 ADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDG 1196 (1567)
T ss_pred hhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecC
Confidence 33456667788888888887765544 999999999999999999975 3667889999
Q ss_pred CCCHHHHHHHHHHHhCC----CeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEE
Q 005742 545 SLPKSQLRRVHTEFHEN----KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (679)
Q Consensus 545 ~~~~~~R~~v~~~F~~g----~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l 615 (679)
.....+|+.+.+.|.+- ..-+||+|.+++.|||+-+.+.||.||..|++.--.|.+=|+-|.||...|++|
T Consensus 1197 st~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1197 STTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred cccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999999999999843 223899999999999999999999999999999999999999999999999886
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=2.3e-16 Score=150.43 Aligned_cols=151 Identities=25% Similarity=0.272 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc-
Q 005742 173 SLKNFQKEALSAWLA-------HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG- 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-------g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~- 244 (679)
+|+++|.+|+..+++ .+++++.+|||+|||++++..+.....++||++|+..|+.|+...+..+........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 689999999999884 588999999999999988755543333999999999999999999966532211110
Q ss_pred -------------CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHH---------HHHhhcCceEEEeecccccccCC
Q 005742 245 -------------SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ---------RLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 245 -------------~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~---------~~~~~~~~~lvViDEaH~l~~~g 302 (679)
.................+++++|.+++........ ........++||+||||++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~-- 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS-- 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH--
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC--
Confidence 01111111223345567899999999987554211 123345789999999999853
Q ss_pred CCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCC
Q 005742 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (679)
Q Consensus 303 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 341 (679)
...++.+.. + +...+|+|||||.
T Consensus 161 ---~~~~~~i~~----~---------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 ---DSSYREIIE----F---------KAAFILGLTATPF 183 (184)
T ss_dssp ---HHHHHHHHH----S---------SCCEEEEEESS-S
T ss_pred ---HHHHHHHHc----C---------CCCeEEEEEeCcc
Confidence 222444432 2 2667999999995
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.67 E-value=1.9e-14 Score=159.08 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
++++..+.+|. .|++.|..+.-.+ .+.-|+.+.||.|||+++.+|++. .|..|-||+++..|+.+-++++..
T Consensus 65 vrEa~~R~lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 44555566787 6889998775544 455799999999999999999964 689999999999999887777665
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHH-H---HHHHhhcCceEEEeeccccc
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~-~---~~~~~~~~~~lvViDEaH~l 298 (679)
+|+.+.++.++.+... .+.. -.++|+++|...+. +.|+. + ......+.+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~e-rr~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEE-RKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHH-HHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 4899888766555432 2222 23699999997654 23321 0 12223467999999999987
No 146
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=6.2e-16 Score=183.82 Aligned_cols=424 Identities=13% Similarity=0.123 Sum_probs=232.5
Q ss_pred CCCCHHHHHHHHHHHc-----CCCEEEEeecCCcchhhhhhhh---hcc----CCeEEEEcCchHHHHHHHHHHHhcC--
Q 005742 172 SSLKNFQKEALSAWLA-----HHDCLVLAATGSGKSLCFQIPA---LLT----GKVVVVISPLISLMHDQCSKLSKHG-- 237 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~-----g~d~iv~a~TGsGKTl~~~lp~---l~~----~~~vLvl~Pt~~L~~q~~~~l~~~~-- 237 (679)
..+++||.+.++++.. +.+.++...+|.|||+..+..+ +.. .+.++|++|+ +++.+|.+++.++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4789999999988652 5789999999999996443322 111 4689999997 88999999998873
Q ss_pred CceEEEcCCCCc-----HHHHHHHHcC----CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHH
Q 005742 238 VTACFLGSGQPD-----NKVEQKALRG----MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (679)
Q Consensus 238 ~~~~~~~~~~~~-----~~~~~~~~~~----~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~ 308 (679)
...+....|... .......... ..+++++|++.+.... .....+.-..+.++|+||+|++.+.. ...
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ikn~~---s~~ 491 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIKNDQ---SSE 491 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHhhhh---hHH
Confidence 331333333332 2222223332 2799999999887632 11445556689999999999986532 222
Q ss_pred HHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC-CCCCceEEec-ccCCCCcEEEEEecCC----ccc
Q 005742 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH-MSKGTKFVLT-SFFRPNLRFSVKHSKT----SSR 382 (679)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~-~~~r~~~~~~v~~~~~----~~~ 382 (679)
...+..+. ....++||+||.++...+++..+. +..+...... ..+...+......... ...
T Consensus 492 ~~~l~~~~-------------~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 558 (866)
T COG0553 492 GKALQFLK-------------ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEAR 558 (866)
T ss_pred HHHHHHHh-------------hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhH
Confidence 23332111 344699999998889999998887 4332222211 0000000000000000 000
Q ss_pred hhhhHhHHHHHHHHhhhcccccc-ccccccccCCCcc---CcC-CCCcccccccCCCCCCCCCCCCccCCCC--CCCcch
Q 005742 383 ASYKKDFCQLIDIYTKKKKTGEK-EKSAIPQDLDDQS---DTS-SSSSMSEESRISPNIGDGYYDDEDVGNS--PMGKEM 455 (679)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 455 (679)
......+..++..+..++..... ....++....... ... ....+....................... ......
T Consensus 559 ~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (866)
T COG0553 559 ELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSE 638 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 01111133444444333333321 0001111000000 000 0000000000000000000000000000 000000
Q ss_pred hhhhhccCCccccccccccccCCCCC-CCCCC-------------ccchhhcccc-CchHHHhhhc-cCCCC-CC--cEE
Q 005742 456 SVEFLENDSVDDWDVACGEFYGHSPH-RDRDT-------------DRSFERTDLL-NKPAERLSML-QEPLE-DG--LTI 516 (679)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~-~~~~~ll~~l-~~~~~-~~--~~I 516 (679)
..-+..-..+ ...|......... ..... .......... .+...+.++| ..... .. ++|
T Consensus 639 ~~~l~~~~~l---r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvl 715 (866)
T COG0553 639 LNILALLTRL---RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVL 715 (866)
T ss_pred hHHHHHHHHH---HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEE
Confidence 0000000000 0111111111100 00000 0000001111 4455555555 23322 34 899
Q ss_pred EEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCC--CeeEEEEecccccCcccccccEEEEeCCCCCHH
Q 005742 517 IYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN--KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594 (679)
Q Consensus 517 VF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g--~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~ 594 (679)
||++.....+.+..+|...++.+..++|+++.++|...++.|.++ ..-++++|.+++.|+|+...++||+||..|++.
T Consensus 716 ifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~ 795 (866)
T COG0553 716 IFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPA 795 (866)
T ss_pred EEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChH
Confidence 999999999999999999999999999999999999999999985 566788889999999999999999999999999
Q ss_pred HHHHHhhccccCCCCceEEEEe
Q 005742 595 AYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 595 ~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
...|.+.|++|.|+...+.++-
T Consensus 796 ~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 796 VELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred HHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999998877754
No 147
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.1e-14 Score=147.04 Aligned_cols=321 Identities=17% Similarity=0.171 Sum_probs=191.8
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh------ccCCeEEEEcCchHHHHH
Q 005742 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPLISLMHD 228 (679)
Q Consensus 155 ~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l------~~~~~vLvl~Pt~~L~~q 228 (679)
.++.....++|+++... ..+.++.+-+..+.+++-+++++.||||||. ++|-. .....|...-|.|--+.+
T Consensus 30 ~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQprrvaams 106 (699)
T KOG0925|consen 30 KPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQPRRVAAMS 106 (699)
T ss_pred CcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCchHHHHHH
Confidence 36777888888877555 3456666666667777888999999999996 34432 234778888899988888
Q ss_pred HHHHHHhc-CCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchH
Q 005742 229 QCSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (679)
Q Consensus 229 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~ 307 (679)
++.+...- .+... .................-+-++|.++|++ .....-.+.++..||+||||.-+- ..
T Consensus 107 va~RVadEMDv~lG---~EVGysIrfEdC~~~~T~Lky~tDgmLlr---Eams~p~l~~y~viiLDeahERtl-----AT 175 (699)
T KOG0925|consen 107 VAQRVADEMDVTLG---EEVGYSIRFEDCTSPNTLLKYCTDGMLLR---EAMSDPLLGRYGVIILDEAHERTL-----AT 175 (699)
T ss_pred HHHHHHHHhccccc---hhccccccccccCChhHHHHHhcchHHHH---HHhhCcccccccEEEechhhhhhH-----HH
Confidence 88777652 22111 10000000000011112234566666653 112223467899999999997641 11
Q ss_pred HHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhH
Q 005742 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387 (679)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~ 387 (679)
++ +..+++.. +. .+++.+++.+|||+.....+.. ++. .+.+-... +.++.+. .........+..
T Consensus 176 Di--LmGllk~v----~~-~rpdLk~vvmSatl~a~Kfq~y---f~n--~Pll~vpg--~~PvEi~--Yt~e~erDylEa 239 (699)
T KOG0925|consen 176 DI--LMGLLKEV----VR-NRPDLKLVVMSATLDAEKFQRY---FGN--APLLAVPG--THPVEIF--YTPEPERDYLEA 239 (699)
T ss_pred HH--HHHHHHHH----Hh-hCCCceEEEeecccchHHHHHH---hCC--CCeeecCC--CCceEEE--ecCCCChhHHHH
Confidence 11 11111111 11 1248899999999976654433 321 11111111 2222221 111111122222
Q ss_pred hHHHHHHHHhhhccccccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccc
Q 005742 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (679)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (679)
.++.++....
T Consensus 240 airtV~qih~---------------------------------------------------------------------- 249 (699)
T KOG0925|consen 240 AIRTVLQIHM---------------------------------------------------------------------- 249 (699)
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 2222222111
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC---------CCc
Q 005742 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF---------GVK 538 (679)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~---------~~~ 538 (679)
....|-++||....++.+..++.+... .+.
T Consensus 250 -----------------------------------------~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~ 288 (699)
T KOG0925|consen 250 -----------------------------------------CEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLK 288 (699)
T ss_pred -----------------------------------------ccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCce
Confidence 112778999999999988888877641 346
Q ss_pred EEEecCCCCHHHHHHHHHHHh---CC--CeeEEEEecccccCcccccccEEEEeCC------------------CCCHHH
Q 005742 539 AAAYNASLPKSQLRRVHTEFH---EN--KLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEA 595 (679)
Q Consensus 539 ~~~~hg~~~~~~R~~v~~~F~---~g--~~~vLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~ 595 (679)
+..+| +.++.++++--. +| ..+|+|+|++++..+.++.|.+||.-++ |-|..+
T Consensus 289 v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkas 364 (699)
T KOG0925|consen 289 VVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKAS 364 (699)
T ss_pred EEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhH
Confidence 77777 444444443222 22 4579999999999999999999996654 567788
Q ss_pred HHHHhhccccCCCCceEEEEecCCCC
Q 005742 596 YYQEAGRAGRDGHLADCVLYANLSSM 621 (679)
Q Consensus 596 y~Qr~GRagR~G~~g~~~~l~~~~~~ 621 (679)
-.||.|||||. ++|.|+.+|+..-.
T Consensus 365 A~qR~gragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 365 AQQRAGRAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred HHHHhhhccCC-CCCceEEeecHHhh
Confidence 89999999998 79999999986543
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=2.4e-15 Score=166.64 Aligned_cols=313 Identities=19% Similarity=0.276 Sum_probs=211.3
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhhhhc--cCCeEEEEcCchHHHHHHHHHHHhc-----CCceEEEc
Q 005742 173 SLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL--TGKVVVVISPLISLMHDQCSKLSKH-----GVTACFLG 244 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp~l~--~~~~vLvl~Pt~~L~~q~~~~l~~~-----~~~~~~~~ 244 (679)
...|+|.++++.+.+. .+++|.+|+|||||.++.++++. ..+++++++|.-+.+..+++.|.+. |...+.++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 3488999999988764 57899999999999999998886 4679999999999887777766552 45555555
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CCCCchHHHHHHHHHHHhhcccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGANN 323 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g~~f~~~~~~l~~~~~~~~~~~ 323 (679)
+...-.. .+....+|+|+||+++..+ + ..+.+++.|.||.|.+.+ .|..++-... +..+...+.
T Consensus 1223 ge~s~~l----kl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~--- 1287 (1674)
T KOG0951|consen 1223 GETSLDL----KLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLE--- 1287 (1674)
T ss_pred Cccccch----HHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHH---
Confidence 4433221 1223469999999988543 2 456799999999999975 4443333322 222222222
Q ss_pred ccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCC-CcEEEEEecCCccchhhhHhHHHHHHHHhhhccc
Q 005742 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (679)
Q Consensus 324 ~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (679)
.+.++++||..+. +.+++ +++.....+...+..|| ++.+++....... +...+..+.+...
T Consensus 1288 -----k~ir~v~ls~~la--na~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~---~~~~~~am~~~~~----- 1349 (1674)
T KOG0951|consen 1288 -----KKIRVVALSSSLA--NARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISH---FESRMLAMTKPTY----- 1349 (1674)
T ss_pred -----hheeEEEeehhhc--cchhh---ccccccceeecCcccCCCceeEEEEEeccch---hHHHHHHhhhhHH-----
Confidence 2678999998883 44444 77776667766666676 5555555433322 2222222211100
Q ss_pred cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCC
Q 005742 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (679)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (679)
T Consensus 1350 -------------------------------------------------------------------------------- 1349 (1674)
T KOG0951|consen 1350 -------------------------------------------------------------------------------- 1349 (1674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhccccCchHHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHh----------------------CCCcEE
Q 005742 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----------------------FGVKAA 540 (679)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----------------------~~~~~~ 540 (679)
..+. .-...+.+++||+++++.+..++..|.. ......
T Consensus 1350 -----------------~ai~---~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~g 1409 (1674)
T KOG0951|consen 1350 -----------------TAIV---RHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHG 1409 (1674)
T ss_pred -----------------HHHH---HHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccc
Confidence 0000 0011267999999999999998875543 011112
Q ss_pred EecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEE-----eC------CCCCHHHHHHHhhccccCCCC
Q 005742 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH-----YG------WPQSLEAYYQEAGRAGRDGHL 609 (679)
Q Consensus 541 ~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~-----~d------~p~s~~~y~Qr~GRagR~G~~ 609 (679)
.-|-+++..+..-+...|..|.+.|+|...- ..|+-... +.||. || .+.+.....|++|+|.| .
T Consensus 1410 vg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~ 1484 (1674)
T KOG0951|consen 1410 VGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---A 1484 (1674)
T ss_pred ccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---C
Confidence 2288999999999999999999999999877 88888755 45552 33 25668899999999999 4
Q ss_pred ceEEEEecCCCCCc
Q 005742 610 ADCVLYANLSSMPT 623 (679)
Q Consensus 610 g~~~~l~~~~~~~~ 623 (679)
|.|++++...+..+
T Consensus 1485 ~k~vi~~~~~~k~y 1498 (1674)
T KOG0951|consen 1485 GKCVIMCHTPKKEY 1498 (1674)
T ss_pred ccEEEEecCchHHH
Confidence 68999998776544
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=5.9e-14 Score=154.82 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc---cCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~---~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
++++.++.+|. .|++.|..+--.+.+| -|+.+.||-|||+++.+|++. .|+.|-||++.--||..-++++..
T Consensus 74 vREa~~R~lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 74 VREASKRVLGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred HHHHHHHHhCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 44455556777 6888888776555544 599999999999999999985 789999999999998877766655
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-HHHHH-H---HHHHhhcCceEEEeeccccc
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~-~---~~~~~~~~~~lvViDEaH~l 298 (679)
+|+.+.++.++..... .+ ..-.++|+++|+..+. +.|.. + ......+.+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~e--rr-~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEE--RK-KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHH--HH-HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 4999988876554432 22 2235899999999874 22221 1 11123467899999999987
No 150
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=2.8e-15 Score=122.18 Aligned_cols=81 Identities=33% Similarity=0.519 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccC
Q 005742 527 SIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (679)
Q Consensus 527 ~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 606 (679)
.++++|...++.+..+||++++++|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 005742 607 G 607 (679)
Q Consensus 607 G 607 (679)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.60 E-value=1.6e-13 Score=152.56 Aligned_cols=137 Identities=18% Similarity=0.111 Sum_probs=103.4
Q ss_pred EEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHh-cC-CceEEEcCCCCcHH---HHHHHHcCCccEE
Q 005742 193 VLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK-HG-VTACFLGSGQPDNK---VEQKALRGMYSII 264 (679)
Q Consensus 193 v~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~-~~-~~~~~~~~~~~~~~---~~~~~~~~~~~Il 264 (679)
..+.+|||||.+|+-.+ +..|+.+|||+|...|..|+.+.|++ ++ ..+..++++....+ .+.....+...|+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 33346999999998655 45799999999999999999999987 45 66778888776643 3455667778999
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChh
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~ 343 (679)
|+|-.-+ +..+.++++|||||-|.-+- .....+...+.+..++.... +.++++-||||+-+
T Consensus 245 iGtRSAv---------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~---------~~~lvLgSaTPSle 306 (665)
T PRK14873 245 VGTRSAV---------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH---------GCALLIGGHARTAE 306 (665)
T ss_pred EEcceeE---------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc---------CCcEEEECCCCCHH
Confidence 9997633 45678999999999997642 11123445577776766654 88999999999877
Q ss_pred hHHH
Q 005742 344 VRED 347 (679)
Q Consensus 344 ~~~~ 347 (679)
....
T Consensus 307 s~~~ 310 (665)
T PRK14873 307 AQAL 310 (665)
T ss_pred HHHH
Confidence 6543
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.59 E-value=9.2e-13 Score=144.53 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=77.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhC----CCeeEEEEecccccCccc---------
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE----NKLEVVVATIAFGMGIDK--------- 578 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~----g~~~vLVaT~~~~~GiDi--------- 578 (679)
.|+++|-+.+.+..+.+++.|...--....+.|+.+ .+...+++|+. |.-.||++|+.+.+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~ 547 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDK 547 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCC
Confidence 679999999999999999999764223345566543 35678888886 478999999999999999
Q ss_pred -ccccEEEEeCCCCC-------------------------HHHHHHHhhccccCCCC--ceEEEEecCC
Q 005742 579 -LNVRRIIHYGWPQS-------------------------LEAYYQEAGRAGRDGHL--ADCVLYANLS 619 (679)
Q Consensus 579 -p~v~~VI~~d~p~s-------------------------~~~y~Qr~GRagR~G~~--g~~~~l~~~~ 619 (679)
..+++||..-+|-. ...+.|-+||-=|.... --+++++++.
T Consensus 548 G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 548 DNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 35888988777621 23467899999997664 3344455543
No 153
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.58 E-value=2e-12 Score=151.32 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=81.1
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCccccc--ccEEEEe
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGV--KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN--VRRIIHY 587 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~--v~~VI~~ 587 (679)
++++|||.++.+..+.+++.|..... ....+.=+++...|..+++.|+.++-.||++|..+.+|||+|. +++||..
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~ 831 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIV 831 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEe
Confidence 67999999999999999999975422 1222222444456889999999988899999999999999995 5788888
Q ss_pred CCCC----C--------------------------HHHHHHHhhccccCCCCceEEEEecCC
Q 005742 588 GWPQ----S--------------------------LEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 588 d~p~----s--------------------------~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
.+|. + +..+.|.+||.=|..+..-++++++..
T Consensus 832 kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 832 RLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 7663 1 233579999999987654456666543
No 154
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=3.2e-14 Score=128.92 Aligned_cols=136 Identities=27% Similarity=0.383 Sum_probs=94.3
Q ss_pred CCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHhcC---CceEEEcCCCCcHHHHHHHHcCC
Q 005742 189 HDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKHG---VTACFLGSGQPDNKVEQKALRGM 260 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 260 (679)
+++++.+|||+|||.+++..+.. ..++++|++|++.|+.|+...+.... .....+.+...... ........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ-QEKLLSGK 79 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH-HHHHhcCC
Confidence 46899999999999888766653 45899999999999999999988864 55555544443332 22334567
Q ss_pred ccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccC
Q 005742 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340 (679)
Q Consensus 261 ~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 340 (679)
.+|+++|++.+...+. ........++++||||+|.+.... +.... .... .......+++++||||
T Consensus 80 ~~i~i~t~~~~~~~~~--~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~---------~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELE--RLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKIL---------LKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHH--cCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHH---------hhCCccceEEEEeccC
Confidence 8999999998876544 222234579999999999996532 12211 0011 1123367899999997
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.44 E-value=1.2e-10 Score=132.29 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHh----CCCeeEEEEecccccCccccc--ccEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFH----ENKLEVVVATIAFGMGIDKLN--VRRI 584 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~R~~v~~~F~----~g~~~vLVaT~~~~~GiDip~--v~~V 584 (679)
.+.+|||+++.+..+.+++.|... +.. ...+|. ..|..+++.|+ .|+-.||++|..+.+|||+|. +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 556999999999999999998743 333 344554 24677887776 467789999999999999985 7899
Q ss_pred EEeCCCC----CH--------------------------HHHHHHhhccccCCCCceEEEEecC
Q 005742 585 IHYGWPQ----SL--------------------------EAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 585 I~~d~p~----s~--------------------------~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
|...+|. ++ ..+.|.+||.=|....--++++++.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 9888763 11 2347899999997655335555553
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.44 E-value=3.5e-11 Score=137.61 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=78.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHhCCCe-eEEEEecccccCccccc--ccEEEEe
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLPKSQLRRVHTEFHENKL-EVVVATIAFGMGIDKLN--VRRIIHY 587 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~-~~~~hg~~~~~~R~~v~~~F~~g~~-~vLVaT~~~~~GiDip~--v~~VI~~ 587 (679)
++++|||+++.+..+.+++.+...... ....+|.. .+...++.|+.+.- -++|+|..+.+|||+|. ++.||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 558999999999999999999876552 34445544 34478888886544 89999999999999985 5788888
Q ss_pred CCCCC------------------------------HHHHHHHhhccccCCCCceEEEEec
Q 005742 588 GWPQS------------------------------LEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 588 d~p~s------------------------------~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
++|.- +..+.|.+||+-|.-...-++++++
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 87631 3557899999999655544555555
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=4.7e-11 Score=133.55 Aligned_cols=121 Identities=21% Similarity=0.172 Sum_probs=95.9
Q ss_pred chHHHhhhccCCCC-CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005742 498 KPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~~-~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
|...+++.+.+... +.|+||-+.+++..+.|+++|...|+....+++.....|-+-+-++=+.| .|-|||++++||-
T Consensus 613 K~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGT 690 (1112)
T PRK12901 613 KYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGT 690 (1112)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCc
Confidence 33444444444433 55999999999999999999999999988888875544444444333344 6899999999999
Q ss_pred ccc--------cccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 577 DKL--------NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 577 Dip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||. .==+||-...+.|..-.-|..||+||.|.+|.+..|++..|
T Consensus 691 DIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 691 DIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 986 22478888899999999999999999999999999998775
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.40 E-value=5.5e-11 Score=133.65 Aligned_cols=92 Identities=24% Similarity=0.308 Sum_probs=71.6
Q ss_pred EEEEeCchhHHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHH----------------------hC----CC
Q 005742 515 TIIYVPTRKETLSIAKYLCGF------GVKAAAYNASLPKSQLRRVHTEF----------------------HE----NK 562 (679)
Q Consensus 515 ~IVF~~t~~~~~~l~~~L~~~------~~~~~~~hg~~~~~~R~~v~~~F----------------------~~----g~ 562 (679)
.+|-+.+++.+..++..|-.. .+.++.||+......|..+.+.. ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 577788888888888888753 34588999998777776666443 12 46
Q ss_pred eeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCC
Q 005742 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609 (679)
Q Consensus 563 ~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~ 609 (679)
..|+|+|.+.+.|+|+ +.+.+|. -|.++.+.+|++||+.|.|+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 7899999999999999 4565554 366799999999999998764
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=3e-10 Score=130.07 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=78.5
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCC-------cEEEecCCCCHHHHHHHHHHHhC----CCeeEEEEe--cccccCccc
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGV-------KAAAYNASLPKSQLRRVHTEFHE----NKLEVVVAT--IAFGMGIDK 578 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~R~~v~~~F~~----g~~~vLVaT--~~~~~GiDi 578 (679)
++.+|||.++-...+.+.+.+...+. ....+-+. ...++..+++.|+. |+-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 57899999999999999998876432 11222221 22578899999964 456799999 789999999
Q ss_pred cc--ccEEEEeCCCC-CH------------------------------HHHHHHhhccccCCCCceEEEEecC
Q 005742 579 LN--VRRIIHYGWPQ-SL------------------------------EAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 579 p~--v~~VI~~d~p~-s~------------------------------~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
++ ++.||..++|. ++ ....|.+||+=|....--++++++.
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~ 673 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDK 673 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEeh
Confidence 86 78999999885 21 2236999999998766556666653
No 160
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.33 E-value=1.4e-12 Score=134.75 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=98.6
Q ss_pred HHHHHHHHHHc-------------CCCEEEEeecCCcchhhhhhhhhc---c-----CCeEEEEcCchHHHHHHHHHHHh
Q 005742 177 FQKEALSAWLA-------------HHDCLVLAATGSGKSLCFQIPALL---T-----GKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 177 ~Q~~ai~~~l~-------------g~d~iv~a~TGsGKTl~~~lp~l~---~-----~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
||.+++.+++. .+.+|++.++|+|||+..+..+.. . ...+|||+|. ++..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 68999888742 256899999999999877655531 1 1259999999 888999999999
Q ss_pred cC----CceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHH-----HHHHHHHHHHhhcCceEEEeecccccccCCCCch
Q 005742 236 HG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-----RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306 (679)
Q Consensus 236 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-----~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~ 306 (679)
+. ..+.... +...............+|+|+|++.+. .... .+...++++||+||+|.+.+.. .
T Consensus 80 ~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~----~l~~~~~~~vIvDEaH~~k~~~---s 151 (299)
T PF00176_consen 80 WFDPDSLRVIIYD-GDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE----DLKQIKWDRVIVDEAHRLKNKD---S 151 (299)
T ss_dssp HSGT-TS-EEEES-SSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH----HHHTSEEEEEEETTGGGGTTTT---S
T ss_pred ccccccccccccc-cccccccccccccccceeeecccccccccccccccc----ccccccceeEEEeccccccccc---c
Confidence 74 3333333 333111112223456899999999987 3222 2233459999999999996543 2
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCC
Q 005742 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHM 354 (679)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 354 (679)
..+..+.. + . ...+++|||||..+...+++..+.+
T Consensus 152 ~~~~~l~~----l--------~-~~~~~lLSgTP~~n~~~dl~~~l~~ 186 (299)
T PF00176_consen 152 KRYKALRK----L--------R-ARYRWLLSGTPIQNSLEDLYSLLRF 186 (299)
T ss_dssp HHHHHHHC----C--------C-ECEEEEE-SS-SSSGSHHHHHHHHH
T ss_pred cccccccc----c--------c-cceEEeeccccccccccccccchhe
Confidence 22232211 1 1 4568999999999988888877654
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.27 E-value=2.1e-10 Score=125.88 Aligned_cols=328 Identities=18% Similarity=0.154 Sum_probs=186.5
Q ss_pred CEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEE
Q 005742 190 DCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIY 265 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 265 (679)
-.+|.+|+|||||.+.+-++. .+..++|+|+-.++|+.+.+.+|+..++.-...+.+...... ....++-++
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i----~~~~~~rLi 126 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYII----DGRPYDRLI 126 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccc----cccccCeEE
Confidence 358899999999986655443 257899999999999999999999987643333333322211 112357788
Q ss_pred EChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhH
Q 005742 266 VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345 (679)
Q Consensus 266 ~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 345 (679)
++.+.|.++.. ..+.++++|||||+-..+.. -|.+.+++.......+ ...+.....+|++-|++.....
T Consensus 127 vqIdSL~R~~~-----~~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L----~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 127 VQIDSLHRLDG-----SLLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLL----KELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred EEehhhhhccc-----ccccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHH----HHHHHhCCeEEEecCCCCHHHH
Confidence 88888876543 13556999999999887542 1444444433322221 1112335679999999987776
Q ss_pred HHHHHHcCCCCCceEEecccCCCCcEEEEEecCCccchhhhHhHHHHHHHHhhhccccccccccccccCCCccCcCCCCc
Q 005742 346 EDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSS 425 (679)
Q Consensus 346 ~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (679)
+.+.. +.-.+...++...+..+.+.-.....-. .+..+ .+......
T Consensus 196 dFl~~-~Rp~~~i~vI~n~y~~~~fs~R~~~~~~----~l~~~--~l~~~~~~--------------------------- 241 (824)
T PF02399_consen 196 DFLAS-CRPDENIHVIVNTYASPGFSNRRCTFLR----SLGTD--TLAAALNP--------------------------- 241 (824)
T ss_pred HHHHH-hCCCCcEEEEEeeeecCCcccceEEEec----ccCcH--HHHHHhCC---------------------------
Confidence 65544 4333334444444333322111000000 00000 00000000
Q ss_pred ccccccCCCCCCCCCCCCccCCCCCCCcchhhhhhccCCccccccccccccCCCCCCCCCCccchhhccccCchHHHhhh
Q 005742 426 MSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSM 505 (679)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 505 (679)
....... ..................+...-...+...
T Consensus 242 ------------------~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~ 278 (824)
T PF02399_consen 242 ------------------EDENADT-------------------------SPTPKHSPDPTATAAISNDETTFFSELLAR 278 (824)
T ss_pred ------------------ccccccc-------------------------CCCcCCCCccccccccccchhhHHHHHHHH
Confidence 0000000 000000000000000001111222233333
Q ss_pred ccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccc--cE
Q 005742 506 LQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV--RR 583 (679)
Q Consensus 506 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v--~~ 583 (679)
|. .+.++-||+.|...++.++++.......+..+++.-+..+ +. . -++++|++=|.+..-|+++... +-
T Consensus 279 L~---~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v~-~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 279 LN---AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---VE-S--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred Hh---CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---cc-c--ccceeEEEEeceEEEEeccchhhceE
Confidence 32 2558889999999999999999999999999988766552 22 1 4678999999999999998643 44
Q ss_pred EEEeCCC----CCHHHHHHHhhccccCCCCceEEEEecCC
Q 005742 584 IIHYGWP----QSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (679)
Q Consensus 584 VI~~d~p----~s~~~y~Qr~GRagR~G~~g~~~~l~~~~ 619 (679)
|.-|=-| .++.+.+|++||+-.- .....+++++..
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 5544222 3566789999998655 456677777655
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.27 E-value=2e-11 Score=106.33 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=80.2
Q ss_pred cCCCEEEEeecCCcchhhhhhh----hhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCcc
Q 005742 187 AHHDCLVLAATGSGKSLCFQIP----ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp----~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (679)
+|+-.++-..+|+|||.-.+-- .+.++.++|||.|||.++..+.+.|+...++... ..... ...+..-
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t---~~~~~-----~~~g~~~ 74 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHT---NARMR-----THFGSSI 74 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEES---TTSS---------SSSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCc---eeeec-----cccCCCc
Confidence 3556788899999999754332 3358999999999999999999999876543321 11111 1235567
Q ss_pred EEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 263 Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
|-++|...+..++. . .....++++||+||||..-- ..+...+.+...-. .....++++||||+.
T Consensus 75 i~vMc~at~~~~~~--~-p~~~~~yd~II~DEcH~~Dp------~sIA~rg~l~~~~~-------~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 75 IDVMCHATYGHFLL--N-PCRLKNYDVIIMDECHFTDP------TSIAARGYLRELAE-------SGEAKVIFMTATPPG 138 (148)
T ss_dssp EEEEEHHHHHHHHH--T-SSCTTS-SEEEECTTT--SH------HHHHHHHHHHHHHH-------TTS-EEEEEESS-TT
T ss_pred ccccccHHHHHHhc--C-cccccCccEEEEeccccCCH------HHHhhheeHHHhhh-------ccCeeEEEEeCCCCC
Confidence 89999998876554 2 44567899999999997632 22222222222211 013579999999976
Q ss_pred hh
Q 005742 343 QV 344 (679)
Q Consensus 343 ~~ 344 (679)
..
T Consensus 139 ~~ 140 (148)
T PF07652_consen 139 SE 140 (148)
T ss_dssp --
T ss_pred CC
Confidence 53
No 163
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.15 E-value=1.1e-09 Score=116.52 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=99.9
Q ss_pred CchHHHhhhccCCCCCC-cEEEEeCchhHHHHHHHHHHhCC------------------CcEEEecCCCCHHHHHHHHHH
Q 005742 497 NKPAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGFG------------------VKAAAYNASLPKSQLRRVHTE 557 (679)
Q Consensus 497 ~~~~~ll~~l~~~~~~~-~~IVF~~t~~~~~~l~~~L~~~~------------------~~~~~~hg~~~~~~R~~v~~~ 557 (679)
.+...+++.+.+...-+ ++|||.+.....+.|.+.|.++. .....++|..+..+|++.+++
T Consensus 703 pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinq 782 (1387)
T KOG1016|consen 703 PKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQ 782 (1387)
T ss_pred CceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHh
Confidence 44555566666655444 99999999999999999998732 234567889999999999999
Q ss_pred HhCC---CeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccCCCCceEEEEe
Q 005742 558 FHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (679)
Q Consensus 558 F~~g---~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~ 616 (679)
|.+. ..-+|++|.+...|||+-..+-+|.||..|++.--.|.+-|+-|.|+...|++|-
T Consensus 783 fN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 783 FNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred ccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9853 2358999999999999988889999999999999999999999999999998874
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.03 E-value=1e-08 Score=119.71 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred CCEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHc-CCcc
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-GMYS 262 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (679)
+..+|+=-||||||++....+- ...+.++||+-++.|-.|....+..++....... ...........+. ..-.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAESTSELKELLEDGKGK 352 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-cccCHHHHHHHHhcCCCc
Confidence 4689999999999987554332 3678999999999999999999999865544433 3333333444444 3348
Q ss_pred EEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 263 Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
|+|+|-+.+.............++--.||+|||||--. | ..-..+ ...++ +...++||+||..
T Consensus 353 ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G----~~~~~~---~~~~~---------~a~~~gFTGTPi~ 415 (962)
T COG0610 353 IIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-G----ELAKLL---KKALK---------KAIFIGFTGTPIF 415 (962)
T ss_pred EEEEEecccchhhhcccccccCCCcEEEEEechhhccc-c----HHHHHH---HHHhc---------cceEEEeeCCccc
Confidence 99999999987665321112234455788999997631 1 111111 22222 5779999999965
Q ss_pred h
Q 005742 343 Q 343 (679)
Q Consensus 343 ~ 343 (679)
.
T Consensus 416 ~ 416 (962)
T COG0610 416 K 416 (962)
T ss_pred c
Confidence 4
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.95 E-value=6.2e-09 Score=105.64 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=53.5
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEeecCCcchhhhhhhhhc----cCC-----eEEEEcCchHHHHHHHHHHHh
Q 005742 169 FGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPALL----TGK-----VVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~----~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~-----~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
|.| +|+|.|.+.+.. +.+|.++++.+|||+|||+++++|++. .+. +++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 567 469999995554 456889999999999999999999862 233 899999999998887776654
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.95 E-value=6.2e-09 Score=105.64 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=53.5
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEeecCCcchhhhhhhhhc----cCC-----eEEEEcCchHHHHHHHHHHHh
Q 005742 169 FGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPALL----TGK-----VVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~----~l~g~d~iv~a~TGsGKTl~~~lp~l~----~~~-----~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
|.| +|+|.|.+.+.. +.+|.++++.+|||+|||+++++|++. .+. +++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 567 469999995554 456889999999999999999999862 233 899999999998887776654
No 167
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.93 E-value=5.2e-07 Score=94.77 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=93.0
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc--cccCcccccccEEEEeCC
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA--FGMGIDKLNVRRIIHYGW 589 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~--~~~GiDip~v~~VI~~d~ 589 (679)
.+++|||+++--.-..|.++|.+.++..+.+|--.+..+-.+.-..|.+|+.+||+-|.- .=+-..+..+..||+|++
T Consensus 300 ~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~ 379 (442)
T PF06862_consen 300 MSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGP 379 (442)
T ss_pred CCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECC
Confidence 568999999999999999999999999999999999999999999999999999999963 445567888999999999
Q ss_pred CCCHHHHHHHhhccccCCC------CceEEEEecCCCC
Q 005742 590 PQSLEAYYQEAGRAGRDGH------LADCVLYANLSSM 621 (679)
Q Consensus 590 p~s~~~y~Qr~GRagR~G~------~g~~~~l~~~~~~ 621 (679)
|..+.-|-..+.-.+.... ...|.++|+.-|.
T Consensus 380 P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 380 PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred CCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 9998887776655444332 5788888875443
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.92 E-value=7.7e-08 Score=106.83 Aligned_cols=121 Identities=20% Similarity=0.166 Sum_probs=86.8
Q ss_pred chHHHhhhccCCC-CCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCc
Q 005742 498 KPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (679)
Q Consensus 498 ~~~~ll~~l~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~Gi 576 (679)
|....++.+.+.. .+.|+||-+.+++..+.+.+.|.+.|+.-..+++.-...+=+-+.+.-+.| .|-|||++++||-
T Consensus 414 K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGT 491 (822)
T COG0653 414 KFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGT 491 (822)
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCc
Confidence 3344444444433 356999999999999999999999999988888876644433333333333 5789999999999
Q ss_pred cccccc-----------EEEEeCCCCCHHHHHHHhhccccCCCCceEEEEecCCC
Q 005742 577 DKLNVR-----------RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (679)
Q Consensus 577 Dip~v~-----------~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~l~~~~~ 620 (679)
||.--. +||--.--.|..---|..||+||.|-+|.+..|++..|
T Consensus 492 DIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 492 DIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 985222 34444444455555699999999999999998887654
No 169
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.89 E-value=2.1e-09 Score=121.79 Aligned_cols=82 Identities=7% Similarity=-0.002 Sum_probs=59.0
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEcc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT 339 (679)
...|+++||+.+..-+- .+.+++..+..|||||||++.+ ...+..|.++... ..+..-+.+|||+
T Consensus 7 ~ggi~~~T~rIl~~DlL--~~ri~~~~itgiiv~~Ahr~~~-----~~~eaFI~rlyr~--------~n~~gfIkafSds 71 (814)
T TIGR00596 7 EGGIFSITSRILVVDLL--TGIIPPELITGILVLRADRIIE-----SSQEAFILRLYRQ--------KNKTGFIKAFSDN 71 (814)
T ss_pred cCCEEEEechhhHhHHh--cCCCCHHHccEEEEeecccccc-----cccHHHHHHHHHH--------hCCCcceEEecCC
Confidence 35799999999986443 6778889999999999999975 2233344333222 2235569999999
Q ss_pred CCh-----hhHHHHHHHcCCCC
Q 005742 340 ATI-----QVREDILKSLHMSK 356 (679)
Q Consensus 340 ~~~-----~~~~~i~~~l~~~~ 356 (679)
|.. .....+++.|++..
T Consensus 72 P~~~~~g~~~l~~vmk~L~i~~ 93 (814)
T TIGR00596 72 PEAFTMGFSPLETKMRNLFLRH 93 (814)
T ss_pred CcccccchHHHHHHHHHhCcCe
Confidence 987 34777888887653
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.88 E-value=6.9e-10 Score=122.63 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHHHHHHHHHHHhc----CCceEE
Q 005742 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKH----GVTACF 242 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~----~~~~~~ 242 (679)
...|.|.+.+..... ..+.++-+|||+|||++|.+.+.. ++.++++++|.++|+..-...+.+. |++++-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 345556555444332 357889999999999999988763 6889999999999977666666553 677777
Q ss_pred EcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc-CCCCchHHHHHHHHHHHhhcc
Q 005742 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGA 321 (679)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~-~g~~f~~~~~~l~~~~~~~~~ 321 (679)
..+.....- . ....++++|+||+++....+.+....-+.++.++|+||.|++.+ +|+.++-... +.++.
T Consensus 1007 ~tgd~~pd~---~-~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivs-----r~n~~- 1076 (1230)
T KOG0952|consen 1007 LTGDVTPDV---K-AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVS-----RMNYI- 1076 (1230)
T ss_pred ccCccCCCh---h-heecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEee-----ccccC-
Confidence 766554431 1 12347999999999988877777777788999999999999975 3432222211 11110
Q ss_pred ccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCC
Q 005742 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357 (679)
Q Consensus 322 ~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~ 357 (679)
-....+.++.+++|--+ .+..++.+||+..+.
T Consensus 1077 --s~~t~~~vr~~glsta~--~na~dla~wl~~~~~ 1108 (1230)
T KOG0952|consen 1077 --SSQTEEPVRYLGLSTAL--ANANDLADWLNIKDM 1108 (1230)
T ss_pred --ccccCcchhhhhHhhhh--hccHHHHHHhCCCCc
Confidence 12233456666666555 567789999998654
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.80 E-value=2.8e-09 Score=118.13 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=93.2
Q ss_pred CcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCe--eEEEEecccccCcccccccEEEEeCCC
Q 005742 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKL--EVVVATIAFGMGIDKLNVRRIIHYGWP 590 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~--~vLVaT~~~~~GiDip~v~~VI~~d~p 590 (679)
.++|||++-......+.-.|...++....+.|.|+...|.+.+..|..+.. -.+++..+.+.|+++....+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999999999999999999999999999999999999999999995532 356778999999999999999999999
Q ss_pred CCHHHHHHHhhccccCCCCceEEE
Q 005742 591 QSLEAYYQEAGRAGRDGHLADCVL 614 (679)
Q Consensus 591 ~s~~~y~Qr~GRagR~G~~g~~~~ 614 (679)
|++..--|.+-|++|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999887766
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.72 E-value=6.9e-08 Score=95.29 Aligned_cols=133 Identities=21% Similarity=0.254 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHh--
Q 005742 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSK-- 235 (679)
Q Consensus 161 ~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~-- 235 (679)
+.++..+.+|+ .|++.|..++-.+..|+ |+.+.||-|||++..+|+. ..|..|-|++....|+..-++++..
T Consensus 66 ~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 33444456677 79999999988887665 9999999999999988886 4788999999999998877777665
Q ss_pred --cCCceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHH-HHHHH-H---HHHhhcCceEEEeecccccc
Q 005742 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-LIKPL-Q---RLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~~~-~---~~~~~~~~~lvViDEaH~l~ 299 (679)
+|+.+..+..+.+... ...... ++|+++|...+.- .|+.. . .....+.+.++||||||.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~-r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEE-RREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHH-HHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHH-HHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 5999988887766432 222222 5899999998863 33321 0 01113678999999999884
No 173
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.70 E-value=1.7e-09 Score=118.20 Aligned_cols=355 Identities=14% Similarity=0.117 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEeecCCcchhhhh--hhhhc----cCCeEEEEcCchHHHHHHHHHHHhcC--Cce
Q 005742 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQ--IPALL----TGKVVVVISPLISLMHDQCSKLSKHG--VTA 240 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl~~~--lp~l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~--~~~ 240 (679)
.+.+||.+.++++. .+.++|+..++|.|||...+ ++.+. ..+..|+++|.-..+. |-+.+..+. ..+
T Consensus 295 ~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~n-we~e~~~wap~~~v 373 (696)
T KOG0383|consen 295 TLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVN-WEREFELWAPSFYV 373 (696)
T ss_pred cccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccC-CCCchhccCCCccc
Confidence 57799999998866 46799999999999996433 23332 3567788888755433 233333321 111
Q ss_pred EEEcCCCCcHHH---------------------HHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 241 CFLGSGQPDNKV---------------------EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 241 ~~~~~~~~~~~~---------------------~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+...+....... ........+++...+|++...- ...+..-.|.++|+||+|++.
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~----~~il~~v~w~~livde~~rlk 449 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID----QSILFSVQWGLLIVDEAHRLK 449 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC----HHHHhhhhcceeEeechhhcc
Confidence 111111110000 0011122467888888866431 233344579999999999997
Q ss_pred cCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCCCCCceEEecccCCCCcEEEEEecCC
Q 005742 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (679)
Q Consensus 300 ~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~r~~~~~~v~~~~~ 379 (679)
... ...++.+.. + +.-..++||.||.+++.++++..|++.....+.....+...+.-..
T Consensus 450 n~~---s~~f~~l~~----~---------~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~----- 508 (696)
T KOG0383|consen 450 NKQ---SKRFRVLTA----Y---------PIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS----- 508 (696)
T ss_pred cch---hhhhhhccc----c---------ccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh-----
Confidence 522 111222210 0 1234689999999999999999998765443332222111111000
Q ss_pred ccchhhhHhHHHHHH-----HHhhhccc--cccccccccccCCCccCcCCCCcccccccCCCCCCCCCCCCccCCCCCCC
Q 005742 380 SSRASYKKDFCQLID-----IYTKKKKT--GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMG 452 (679)
Q Consensus 380 ~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (679)
...-.+.++.+.. .+...-.. ..+...+....+..+.+.+....+.. .|.. .
T Consensus 509 --~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~-----------n~~~--------l 567 (696)
T KOG0383|consen 509 --CEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTR-----------NWQG--------L 567 (696)
T ss_pred --HHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcC-----------ChHH--------H
Confidence 0001111111111 11110000 11111111112222111111111100 0000 0
Q ss_pred cchhhhhhccCCccccccccccccCCCCCCCCCCccc---hhhccccCchHHHhhhccCCCC-CCcEEEEeCchhHHHHH
Q 005742 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRS---FERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSI 528 (679)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~l~~~~~-~~~~IVF~~t~~~~~~l 528 (679)
.....++.....+.+....|.+.+......+...... ........++..+...+.+... .+|++||.+.+...+.+
T Consensus 568 ~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldll 647 (696)
T KOG0383|consen 568 LAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLL 647 (696)
T ss_pred hhcchhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 0122334444445555666666666655222221111 1222334455555555555444 44999999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHh---CCCeeEEEEecccccC
Q 005742 529 AKYLCGFGVKAAAYNASLPKSQLRRVHTEFH---ENKLEVVVATIAFGMG 575 (679)
Q Consensus 529 ~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~---~g~~~vLVaT~~~~~G 575 (679)
.+++...+ ....++|.....+|+..++.|. +..+.+|.+|.+.+.|
T Consensus 648 ed~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 648 EDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999888 8999999999999999999998 4578899999998876
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.64 E-value=2.6e-07 Score=100.81 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=92.8
Q ss_pred HHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccc
Q 005742 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (679)
Q Consensus 501 ~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~ 573 (679)
.++..+....-.+-++||.+.-...-.|..+|... .+.+...|+.+...++.++.+....|..++++.|.+++
T Consensus 632 al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 632 ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred HHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceee
Confidence 33333433333567999999999999999888763 45678889999989999999999999999999999999
Q ss_pred cCcccccccEEEEeCCC------------------CCHHHHHHHhhccccCCCCceEEEEecC
Q 005742 574 MGIDKLNVRRIIHYGWP------------------QSLEAYYQEAGRAGRDGHLADCVLYANL 618 (679)
Q Consensus 574 ~GiDip~v~~VI~~d~p------------------~s~~~y~Qr~GRagR~G~~g~~~~l~~~ 618 (679)
.-|.+.++..||..+.. .+....+||.||+||. ++|.|..++..
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 99999988888755432 2455779999999998 68888888753
No 175
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1e-05 Score=84.05 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=88.2
Q ss_pred CcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc--cccCcccccccEEEEeCCC
Q 005742 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA--FGMGIDKLNVRRIIHYGWP 590 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~--~~~GiDip~v~~VI~~d~p 590 (679)
.-+|||.|+--.-.++.+++.+.++....+|-=.++..-.+.-+.|..|...||+-|.- +=+--++..|..||+|.+|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 36899999999999999999998888887776666666677778899999999999964 4567889999999999999
Q ss_pred CCHH---HHHHHhhccccCC----CCceEEEEecCCCC
Q 005742 591 QSLE---AYYQEAGRAGRDG----HLADCVLYANLSSM 621 (679)
Q Consensus 591 ~s~~---~y~Qr~GRagR~G----~~g~~~~l~~~~~~ 621 (679)
.++. +++.+.+|+.-.| ....|.++|+.-|.
T Consensus 633 ~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 633 NNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred CCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9976 4577777876443 33678888876654
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.35 E-value=6.2e-06 Score=94.08 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=41.9
Q ss_pred CeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccC
Q 005742 562 KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (679)
Q Consensus 562 ~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 606 (679)
..+++++-+++.+|.|.|+|-.+.-..-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 789999999999999999999999898888999999999999883
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.25 E-value=1.3e-06 Score=86.48 Aligned_cols=63 Identities=29% Similarity=0.425 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEeecCCcchh--hhhhhhh---------ccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 173 SLKNFQKEALSAWLAHHD-CLVLAATGSGKSL--CFQIPAL---------LTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d-~iv~a~TGsGKTl--~~~lp~l---------~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
+|++.|.+|+..++.... .+|.+|.|+|||. +.++..+ ..++++|+++|+..-+.+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999998888 9999999999994 3333333 4688999999999999999999888
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.17 E-value=5.9e-06 Score=87.90 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=66.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005742 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
+++.+|+.-|..|+.++|...-.|+++|.|+|||.+..-.++ ...+.+||++|+..-+.|.++.+.+.|++++-+.
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~ 485 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLC 485 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeeee
Confidence 477889999999999999888899999999999976543333 3689999999999999999999999988887765
Q ss_pred C
Q 005742 245 S 245 (679)
Q Consensus 245 ~ 245 (679)
+
T Consensus 486 a 486 (935)
T KOG1802|consen 486 A 486 (935)
T ss_pred h
Confidence 4
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.10 E-value=1.3e-05 Score=74.58 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec--ccccCccccc--ccEEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGV--KAAAYNASLPKSQLRRVHTEFHENKLEVVVATI--AFGMGIDKLN--VRRII 585 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~--~~~~GiDip~--v~~VI 585 (679)
++.+|||+++.+..+.+.+.+..... ....+.- ...++..+++.|+++.-.||+|+. .+.+|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 68999999999999999999987532 1122222 356788999999999999999998 9999999995 88999
Q ss_pred EeCCCC----CH--------------------------HHHHHHhhccccCCCCceEEEEec
Q 005742 586 HYGWPQ----SL--------------------------EAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 586 ~~d~p~----s~--------------------------~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
..++|. ++ ....|.+||+-|....--++++++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 999873 11 234699999999877655666665
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.10 E-value=5.6e-05 Score=83.19 Aligned_cols=47 Identities=28% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCCeeEEEEecccccCcccccccEEEEeCCCCCHHHHHHHhhccccC
Q 005742 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (679)
Q Consensus 560 ~g~~~vLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 606 (679)
+...+++.+-.++-+|.|-|+|=.+.-.....|..+=.|.+||+-|-
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 44689999999999999999999999999999999999999999993
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.06 E-value=8.1e-05 Score=73.88 Aligned_cols=160 Identities=18% Similarity=0.081 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEeecCCcchhhhhhhhh---cc-CCeEEEEcCchHHHHHHHHHHHhcCC
Q 005742 173 SLKNFQKEALSAWLA----------HHDCLVLAATGSGKSLCFQIPAL---LT-GKVVVVISPLISLMHDQCSKLSKHGV 238 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~----------g~d~iv~a~TGsGKTl~~~lp~l---~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~ 238 (679)
.+...|.|++--+-+ +.-.++-..||.||--...-.++ .+ .+++|+++.+-.|..+..+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 589999998765431 23467777999999854332222 34 45799999999999999999998754
Q ss_pred ceEEEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHH-------HHHHHH---hhcCceEEEeecccccccCCC---Cc
Q 005742 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIK-------PLQRLA---ESRGIALFAIDEVHCVSKWGH---DF 305 (679)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~-------~~~~~~---~~~~~~lvViDEaH~l~~~g~---~f 305 (679)
....+..-..... .....-...|+++|+..|..-.. .+...+ .-..=.+||+||||.+.+... .-
T Consensus 117 ~~i~v~~l~~~~~--~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 194 (303)
T PF13872_consen 117 DNIPVHPLNKFKY--GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKP 194 (303)
T ss_pred Ccccceechhhcc--CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccc
Confidence 3222211100000 00011234699999998875421 111111 112235899999999965321 01
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChh
Q 005742 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~ 343 (679)
...-..+..+...+ |+.+++..|||...+
T Consensus 195 sk~g~avl~LQ~~L---------P~ARvvY~SATgase 223 (303)
T PF13872_consen 195 SKTGIAVLELQNRL---------PNARVVYASATGASE 223 (303)
T ss_pred cHHHHHHHHHHHhC---------CCCcEEEecccccCC
Confidence 12222333344433 377899999998544
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.98 E-value=4.3e-05 Score=86.13 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhhh---hhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCC
Q 005742 172 SSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~lp---~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 246 (679)
..+++.|.+|+..++.. ...+|.+|+|+|||.+..-. ++..+.++|+++||..-+.+..+.+...+++++.+++.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 46789999999999876 57889999999999543322 23468899999999999999999999877766666544
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=3.2e-05 Score=82.27 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHH
Q 005742 172 SSLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLS 234 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d-~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~ 234 (679)
..+.+-|+.|+..++..++ .++.+|+|+|||.+-...+ +.+++++||.+||..-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3688999999999998765 6889999999997655443 3579999999999999999988754
No 184
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.71 E-value=5.5e-05 Score=72.36 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEeecCCcchhhhhhh--hh-ccCCeEEEEcCchHHHHHHHHH
Q 005742 173 SLKNFQKEALSAWLAHH--DCLVLAATGSGKSLCFQIP--AL-LTGKVVVVISPLISLMHDQCSK 232 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~--d~iv~a~TGsGKTl~~~lp--~l-~~~~~vLvl~Pt~~L~~q~~~~ 232 (679)
+|++-|++|+..++... -.++.++.|+|||.+.... ++ ..+.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 47899999999998654 3678899999999753221 12 3578999999998777765554
No 185
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.69 E-value=5.1e-05 Score=72.01 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhhc-----cCCeEEEEcCchHH
Q 005742 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISL 225 (679)
Q Consensus 171 ~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~-----~~~~vLvl~Pt~~L 225 (679)
+...+..|..++.+++...-+++.+|.|||||+.++..++. .-.+++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 34578999999999998788999999999999887766652 33588888888753
No 186
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.60 E-value=0.0002 Score=80.10 Aligned_cols=122 Identities=27% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEeecCCcchhhh--hhhhh-ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCC
Q 005742 172 SSLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCF--QIPAL-LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ 247 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d-~iv~a~TGsGKTl~~--~lp~l-~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 247 (679)
..|+.-|++|+-.++.-+| .++.+-+|+|||.+. ++-++ ..+++||..+=|..-+..+.-+|+.+++...-++.+.
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEE 747 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCcc
Confidence 3689999999999987765 788999999999643 33333 5799999999999999999999999988866666554
Q ss_pred CcHHHHHH----------------HHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 248 PDNKVEQK----------------ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 248 ~~~~~~~~----------------~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
......+. ...+.+.||.+|-=-+. .-.+..+.+++.|||||-.+.
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------HPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------chhhhccccCEEEEccccccc
Confidence 44322111 22344678877754332 233455679999999999885
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=97.52 E-value=0.00017 Score=57.02 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHcCCC-EEEEeecCCcchhhhh-hhh-h-cc----CCeEEEEcCchHHHHHHHHHH
Q 005742 181 ALSAWLAHHD-CLVLAATGSGKSLCFQ-IPA-L-LT----GKVVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 181 ai~~~l~g~d-~iv~a~TGsGKTl~~~-lp~-l-~~----~~~vLvl~Pt~~L~~q~~~~l 233 (679)
|+...+.+.. ++|.+|.|||||.+.+ +.. + .. +.+++|++|++..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4554444444 5569999999994433 222 1 12 789999999999999998888
No 188
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.49 E-value=0.00018 Score=47.92 Aligned_cols=36 Identities=25% Similarity=0.568 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHH
Q 005742 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYI 43 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (679)
.++.|.+|++|||+.....+|+..++=+.+.|++|+
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 367899999999999999999999999999999986
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.34 E-value=0.00022 Score=75.06 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=58.8
Q ss_pred CEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 190 DCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
-++|.+..|||||++++-.+. ..+..++++++..+|+......+...... ......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------~~~~~~ 63 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------KLKKSD 63 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-------------------chhhhh
Confidence 368899999999987653332 36789999999999998888887764300 001223
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
+..+..+...+. .........++|||||||++..
T Consensus 64 ~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 64 FRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 333333322111 1122356799999999999976
No 190
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=97.28 E-value=0.00041 Score=46.27 Aligned_cols=36 Identities=33% Similarity=0.610 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005742 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
++.|+.|++|||+...+.+|+..++=..+.|+++++
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 567999999999999999999999999999999874
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.28 E-value=0.0014 Score=75.32 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=46.6
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc-cC--CeEEEEcCchHHHHHH
Q 005742 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-TG--KVVVVISPLISLMHDQ 229 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~-~~--~~vLvl~Pt~~L~~q~ 229 (679)
..++ .+++-|++|+..+..++-+++.++.|+|||.+.- +-++. .+ ..+++++||-.-+...
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH
Confidence 4455 7999999999999988899999999999996432 22232 34 6788899997666543
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.00046 Score=67.46 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh---ccC--CeEEEEcCchH
Q 005742 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTG--KVVVVISPLIS 224 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l---~~~--~~vLvl~Pt~~ 224 (679)
.++...+..|...+.++.++..+++.+|+|+|||+.+...++ ..+ .+++|.-|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 356677899999999998888889999999999987655443 222 45666666654
No 193
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=97.23 E-value=0.00058 Score=45.85 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhc
Q 005742 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILN 45 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (679)
+..|..|++|||+...+.+|++.++=..+.|+++++.
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 4689999999999999999999999999999999863
No 194
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.18 E-value=0.0022 Score=71.65 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCC-CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhh--hhhhhc-----cCCeEEEEcCchHHHHHHHH
Q 005742 160 KVNSLLKKHFGHS-SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF--QIPALL-----TGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 160 ~~~~~l~~~~g~~-~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~--~lp~l~-----~~~~vLvl~Pt~~L~~q~~~ 231 (679)
.+...|.+.|+.. ...++|++|+..++.++-+++.+++|+|||.+. ++..+. +..++++++||.--+....+
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e 217 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTE 217 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHH
Confidence 4555566555543 235899999999998889999999999999653 233332 13578899999877777766
Q ss_pred HHHh
Q 005742 232 KLSK 235 (679)
Q Consensus 232 ~l~~ 235 (679)
.+..
T Consensus 218 ~~~~ 221 (615)
T PRK10875 218 SLGK 221 (615)
T ss_pred HHHh
Confidence 6544
No 195
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.011 Score=62.37 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCEEEEeecCCcchhhhhhhh-hc------cCCeEEEE-cCc-hHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHc
Q 005742 189 HDCLVLAATGSGKSLCFQIPA-LL------TGKVVVVI-SPL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALR 258 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~-l~------~~~~vLvl-~Pt-~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 258 (679)
+.+++++|||+|||.+..-.+ .. .+.++.++ +.+ |.-+.+|.+.+.. .++....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~---------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA---------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe----------------
Confidence 467899999999997654322 11 23334333 333 4444444444444 4544221
Q ss_pred CCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEc
Q 005742 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338 (679)
Q Consensus 259 ~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSA 338 (679)
+-++..+...+. .+.+.++|+||++.+... -...+.++..+..... ++....|.|+|
T Consensus 239 ------~~~~~~l~~~L~------~~~~~DlVLIDTaGr~~~----~~~~l~el~~~l~~~~-------~~~e~~LVlsa 295 (388)
T PRK12723 239 ------IESFKDLKEEIT------QSKDFDLVLVDTIGKSPK----DFMKLAEMKELLNACG-------RDAEFHLAVSS 295 (388)
T ss_pred ------eCcHHHHHHHHH------HhCCCCEEEEcCCCCCcc----CHHHHHHHHHHHHhcC-------CCCeEEEEEcC
Confidence 113333332222 346799999999998742 1223444444433321 11235799999
Q ss_pred cCChhhHHHHHHHcC
Q 005742 339 TATIQVREDILKSLH 353 (679)
Q Consensus 339 T~~~~~~~~i~~~l~ 353 (679)
|...+...+++..+.
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999888877777664
No 196
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.14 E-value=0.0083 Score=57.65 Aligned_cols=127 Identities=18% Similarity=0.246 Sum_probs=78.0
Q ss_pred CCCCCCHHHHHHHHHHHc---CCCEEEEeecCCcchhhhhhhhh----cc-CCeEEEEcCchHHHHHHHHHHHhc-----
Q 005742 170 GHSSLKNFQKEALSAWLA---HHDCLVLAATGSGKSLCFQIPAL----LT-GKVVVVISPLISLMHDQCSKLSKH----- 236 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~---g~d~iv~a~TGsGKTl~~~lp~l----~~-~~~vLvl~Pt~~L~~q~~~~l~~~----- 236 (679)
++ -+|+.|.+....+.+ |+|.+.++-+|.|||.+- +|++ .. ...+.+++| ++|..|..+.+...
T Consensus 21 ~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 45 699999999998885 579999999999999763 4443 23 456667777 58999998888763
Q ss_pred CCceEEE--cCCCCc-HHH---H----HHHHcCCccEEEEChHHHHHHHH-HHHH-----------H----HhhcCceEE
Q 005742 237 GVTACFL--GSGQPD-NKV---E----QKALRGMYSIIYVCPETVIRLIK-PLQR-----------L----AESRGIALF 290 (679)
Q Consensus 237 ~~~~~~~--~~~~~~-~~~---~----~~~~~~~~~Ili~Tp~~l~~ll~-~~~~-----------~----~~~~~~~lv 290 (679)
+-.+..+ .-.... ... . .... ..-.|+++||+.+..+.- .+.. . ..+..-..=
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~-~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECM-RSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHH-HcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 2222221 111111 110 1 1112 234699999998875321 1000 0 112345567
Q ss_pred Eeeccccccc
Q 005742 291 AIDEVHCVSK 300 (679)
Q Consensus 291 ViDEaH~l~~ 300 (679)
|+||+|.++.
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 9999998864
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.09 E-value=0.0023 Score=56.72 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=12.8
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
++-+++.+|+|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999997543
No 198
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.07 E-value=0.0026 Score=70.98 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHcCCCEEEEeecCCcchhhh--hhhhhc---c---CCeEEEEcCchHHHHHHHHHHHh
Q 005742 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCF--QIPALL---T---GKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 175 ~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~--~lp~l~---~---~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.+.|++|+..++.++-+++.++.|+|||.+. ++..+. + +.++++.+||---+....+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3799999999999999999999999999753 233332 1 25799999998777766666544
No 199
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.05 E-value=0.0017 Score=72.19 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=70.1
Q ss_pred HHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHh--------CCCee
Q 005742 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-------GVKAAAYNASLPKSQLRRVHTEFH--------ENKLE 564 (679)
Q Consensus 500 ~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~R~~v~~~F~--------~g~~~ 564 (679)
.+.+....+..+.+ +|||.++-...+.+....... +..-..+--. +..+-.+++.+|- .|..-
T Consensus 550 g~~i~~v~rvVp~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~ 627 (945)
T KOG1132|consen 550 GEAILNVARVVPYG-LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVF 627 (945)
T ss_pred HHHHHHHHhhcccc-eEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEE
Confidence 33344444444444 999999988777775544331 1111111111 2333344454443 34445
Q ss_pred EEEEecccccCcccc--cccEEEEeCCCCC--------------------------------------HHHHHHHhhccc
Q 005742 565 VVVATIAFGMGIDKL--NVRRIIHYGWPQS--------------------------------------LEAYYQEAGRAG 604 (679)
Q Consensus 565 vLVaT~~~~~GiDip--~v~~VI~~d~p~s--------------------------------------~~~y~Qr~GRag 604 (679)
+.||=-..++|||+. +-+.||..|+|.- ....=|.+||+-
T Consensus 628 ~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRvi 707 (945)
T KOG1132|consen 628 FAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVI 707 (945)
T ss_pred EEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHH
Confidence 677778899999996 4678999888631 123468999999
Q ss_pred cCCCCceEEEEecCC
Q 005742 605 RDGHLADCVLYANLS 619 (679)
Q Consensus 605 R~G~~g~~~~l~~~~ 619 (679)
|..+.=-++++++..
T Consensus 708 RHR~D~Gav~l~D~R 722 (945)
T KOG1132|consen 708 RHRNDYGAVILCDDR 722 (945)
T ss_pred hhhcccceeeEeech
Confidence 987664455576643
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.92 E-value=0.0097 Score=53.34 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=54.9
Q ss_pred ecCCCCHHHHHHHHHHHhCCC-eeEEEEecccccCccccc--ccEEEEeCCCCC--------------------------
Q 005742 542 YNASLPKSQLRRVHTEFHENK-LEVVVATIAFGMGIDKLN--VRRIIHYGWPQS-------------------------- 592 (679)
Q Consensus 542 ~hg~~~~~~R~~v~~~F~~g~-~~vLVaT~~~~~GiDip~--v~~VI~~d~p~s-------------------------- 592 (679)
+.-+....+...+++.|+... ..||++|.-+.+|||+|+ ++.||..++|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333445556788999998654 379999988999999986 678998887631
Q ss_pred -----HHHHHHHhhccccCCCCceEEEEec
Q 005742 593 -----LEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 593 -----~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
.....|.+||+-|....--++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1234788999999776544555554
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=96.92 E-value=0.027 Score=58.18 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=68.7
Q ss_pred CEEEEeecCCcchhhhhhhh--h-ccCCeEEEEcCc--h-HHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccE
Q 005742 190 DCLVLAATGSGKSLCFQIPA--L-LTGKVVVVISPL--I-SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~--l-~~~~~vLvl~Pt--~-~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 263 (679)
-+++++++|+|||.+....+ + ..+.+++++..- | .-+.|+.......++.+.....+..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~d--------------- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGAD--------------- 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCC---------------
Confidence 46789999999997543222 2 245566665532 2 3345655556666765443222211
Q ss_pred EEEChHH-HHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 264 IYVCPET-VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 264 li~Tp~~-l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
|.. +.+.++ .....+.++|+||.+.++.. -...+..+..+.+. ..++.-++.++||...
T Consensus 207 ----p~~v~~~ai~----~~~~~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~--------~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 ----PAAVAYDAIE----HAKARGIDVVLIDTAGRMHT----DANLMDELKKIVRV--------TKPDLVIFVGDALAGN 266 (336)
T ss_pred ----HHHHHHHHHH----HHHhCCCCEEEEECCCccCC----cHHHHHHHHHHHHh--------hCCceEEEeeccccch
Confidence 111 111112 12235688999999998853 13334444433322 2335668899998876
Q ss_pred hhHHHHHH
Q 005742 343 QVREDILK 350 (679)
Q Consensus 343 ~~~~~i~~ 350 (679)
........
T Consensus 267 d~~~~a~~ 274 (336)
T PRK14974 267 DAVEQARE 274 (336)
T ss_pred hHHHHHHH
Confidence 65544433
No 202
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.87 E-value=0.00097 Score=76.74 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=90.4
Q ss_pred CCCEEEEeecCCcchhhhhhhhhc---------------------cCCeEEEEcCchHHHHHHHHHHHhc---CCceEEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPALL---------------------TGKVVVVISPLISLMHDQCSKLSKH---GVTACFL 243 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l~---------------------~~~~vLvl~Pt~~L~~q~~~~l~~~---~~~~~~~ 243 (679)
|++++.....|.|||..-+...+. ..+.+|||+|. ++..||..++.++ ++++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 567888999999999765543331 36789999996 8889999999987 3344433
Q ss_pred cCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHH-----HHHh-------------hcCceEEEeecccccccCCCCc
Q 005742 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-----RLAE-------------SRGIALFAIDEVHCVSKWGHDF 305 (679)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~-----~~~~-------------~~~~~lvViDEaH~l~~~g~~f 305 (679)
.|-........ ..--.+|||++|+..|..-+.... +.+. .-.|=.|++|||+.+-.
T Consensus 453 ~Girk~~~~~~-~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves----- 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP-FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES----- 526 (1394)
T ss_pred echhhhcccCc-hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-----
Confidence 22111111111 122348999999998875333110 0000 11244689999998743
Q ss_pred hHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCC
Q 005742 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHM 354 (679)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 354 (679)
.-.....+...++ ....=+.|+||-+. ..+++-.|.+
T Consensus 527 --ssS~~a~M~~rL~---------~in~W~VTGTPiq~-Iddl~~Ll~f 563 (1394)
T KOG0298|consen 527 --SSSAAAEMVRRLH---------AINRWCVTGTPIQK-IDDLFPLLEF 563 (1394)
T ss_pred --hHHHHHHHHHHhh---------hhceeeecCCchhh-hhhhHHHHHH
Confidence 2233333333333 56789999999887 5666554443
No 203
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.86 E-value=0.0088 Score=53.69 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCe---eEEEEecc--cccCccccc--ccEEEEeCCCC----C-------------------------
Q 005742 549 SQLRRVHTEFHENKL---EVVVATIA--FGMGIDKLN--VRRIIHYGWPQ----S------------------------- 592 (679)
Q Consensus 549 ~~R~~v~~~F~~g~~---~vLVaT~~--~~~GiDip~--v~~VI~~d~p~----s------------------------- 592 (679)
.+...+++.|++..- .||+++.- +.+|||+|+ ++.||..++|. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345788888886433 68998877 999999986 67899888873 1
Q ss_pred --HHHHHHHhhccccCCCCceEEEEec
Q 005742 593 --LEAYYQEAGRAGRDGHLADCVLYAN 617 (679)
Q Consensus 593 --~~~y~Qr~GRagR~G~~g~~~~l~~ 617 (679)
+....|.+||+=|....--++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 1234799999999876655666655
No 204
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.76 E-value=0.013 Score=61.45 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=42.0
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEeecCCcchhhhhhhhh--c-----cCCeEEEEcCchHHHHHHHHHH
Q 005742 168 HFGHSSLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPAL--L-----TGKVVVVISPLISLMHDQCSKL 233 (679)
Q Consensus 168 ~~g~~~~~~~Q~~ai~~~l----~g~d~iv~a~TGsGKTl~~~lp~l--~-----~~~~vLvl~Pt~~L~~q~~~~l 233 (679)
.|.|...+|-|.+-+-.+. .+.++++-+|+|+|||.+.+-.++ + ...+.++.+-|..=++....++
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 5678888999988766554 356899999999999975443222 1 2335555555544444444443
No 205
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.74 E-value=0.0035 Score=62.21 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=52.8
Q ss_pred HHHHHHhCCCeeEEEEecccccCccccc--------ccEEEEeCCCCCHHHHHHHhhccccCCCC-ceEEEEe
Q 005742 553 RVHTEFHENKLEVVVATIAFGMGIDKLN--------VRRIIHYGWPQSLEAYYQEAGRAGRDGHL-ADCVLYA 616 (679)
Q Consensus 553 ~v~~~F~~g~~~vLVaT~~~~~GiDip~--------v~~VI~~d~p~s~~~y~Qr~GRagR~G~~-g~~~~l~ 616 (679)
...+.|.+|+..|+|.|++++.||-+.+ -++-|...+|||....+|..||++|.||. ...+.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4556899999999999999999998863 24567888999999999999999999995 3334433
No 206
>PRK08181 transposase; Validated
Probab=96.73 E-value=0.018 Score=57.64 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred CCHHHHHHHH----HHHcCCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHH
Q 005742 174 LKNFQKEALS----AWLAHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 174 ~~~~Q~~ai~----~~l~g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~ 229 (679)
+.+.|..++. ++-+++++++++|+|+|||-.+...+ ...+..++++. ..+|+.+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHHH
Confidence 3455555552 44467899999999999995332221 23444554443 34444443
No 207
>PRK06526 transposase; Provisional
Probab=96.70 E-value=0.012 Score=58.60 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHcCCCEEEEeecCCcchhhhhhh---hhccCCeEEEE
Q 005742 183 SAWLAHHDCLVLAATGSGKSLCFQIP---ALLTGKVVVVI 219 (679)
Q Consensus 183 ~~~l~g~d~iv~a~TGsGKTl~~~lp---~l~~~~~vLvl 219 (679)
.++-.++++++++|+|+|||..+... +...+.+++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 44556789999999999999654322 22345555554
No 208
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.67 E-value=0.0045 Score=62.53 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=46.3
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCC--CEEEEeecCCcchhhhhhhhhc------cCCeEEEEcCchHH
Q 005742 167 KHFGHSSLKNFQKEALSAWLAHH--DCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISL 225 (679)
Q Consensus 167 ~~~g~~~~~~~Q~~ai~~~l~g~--d~iv~a~TGsGKTl~~~lp~l~------~~~~vLvl~Pt~~L 225 (679)
+.||+...+.+|.-|+..++... =+.+.++-|||||+.++.+.+. .-.++||-=|+..+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 57899878889999999988653 3567889999999988777664 35678888887665
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.60 E-value=0.051 Score=51.83 Aligned_cols=127 Identities=22% Similarity=0.195 Sum_probs=68.4
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEc-C-chHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVIS-P-LISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~-P-t~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
+++++|||+|||.+..-.+. .++.++.+++ - .|.=+.+|.+.+.+ .++..........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~---------------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD---------------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC----------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh----------------
Confidence 57899999999976543222 1344444443 3 24445555555544 4555443322211
Q ss_pred EEChHHHH-HHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChh
Q 005742 265 YVCPETVI-RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (679)
Q Consensus 265 i~Tp~~l~-~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~ 343 (679)
|..+. ..++ ....++.++|+||-+-+... -...+..+..+.+... +..-.+.++||....
T Consensus 68 ---~~~~~~~~l~----~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~--------~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 68 ---PAEIAREALE----KFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALN--------PDEVHLVLSATMGQE 128 (196)
T ss_dssp ---HHHHHHHHHH----HHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHS--------SSEEEEEEEGGGGGH
T ss_pred ---hHHHHHHHHH----HHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcC--------CccceEEEecccChH
Confidence 11111 1122 23345789999999876532 2344555655554432 244589999999887
Q ss_pred hHHHHHHHc
Q 005742 344 VREDILKSL 352 (679)
Q Consensus 344 ~~~~i~~~l 352 (679)
....+....
T Consensus 129 ~~~~~~~~~ 137 (196)
T PF00448_consen 129 DLEQALAFY 137 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555543
No 210
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.07 Score=55.65 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=69.7
Q ss_pred CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcC-c-h-HHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCcc
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISP-L-I-SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~P-t-~-~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (679)
+.+++++|||+|||.+....+. ..+.++.++.- + | ..+.|+.......++. -
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip----------------------v 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE----------------------V 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc----------------------E
Confidence 4678999999999976543332 23444444432 2 3 2344444332322222 1
Q ss_pred EEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 263 Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
+++.+|..+.+.+..+ ....+.++|+||-+=+... -...+..+..+.... .+..-.|.+|||...
T Consensus 300 ~v~~d~~~L~~aL~~l---k~~~~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~--------~PdevlLVLsATtk~ 364 (436)
T PRK11889 300 IAVRDEAAMTRALTYF---KEEARVDYILIDTAGKNYR----ASETVEEMIETMGQV--------EPDYICLTLSASMKS 364 (436)
T ss_pred EecCCHHHHHHHHHHH---HhccCCCEEEEeCccccCc----CHHHHHHHHHHHhhc--------CCCeEEEEECCccCh
Confidence 2234566555444321 1123589999998877542 133455554443322 123346779999877
Q ss_pred hhHHHHHHHcCC
Q 005742 343 QVREDILKSLHM 354 (679)
Q Consensus 343 ~~~~~i~~~l~~ 354 (679)
....++.+.+..
T Consensus 365 ~d~~~i~~~F~~ 376 (436)
T PRK11889 365 KDMIEIITNFKD 376 (436)
T ss_pred HHHHHHHHHhcC
Confidence 766667666653
No 211
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.44 E-value=0.017 Score=56.99 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=13.5
Q ss_pred CCEEEEeecCCcchh
Q 005742 189 HDCLVLAATGSGKSL 203 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl 203 (679)
..+++++|+|+|||-
T Consensus 46 ~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 46 GYIYLWSREGAGRSH 60 (235)
T ss_pred CeEEEECCCCCCHHH
Confidence 578999999999994
No 212
>PRK08727 hypothetical protein; Validated
Probab=96.38 E-value=0.029 Score=55.26 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.5
Q ss_pred hcCceEEEeecccccccC
Q 005742 284 SRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~~ 301 (679)
+.+.++|||||+|.+..+
T Consensus 91 l~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQ 108 (233)
T ss_pred HhcCCEEEEeCcccccCC
Confidence 456789999999998653
No 213
>PRK06893 DNA replication initiation factor; Validated
Probab=96.35 E-value=0.021 Score=56.18 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.8
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
+.+.+++||||+|.+..
T Consensus 89 ~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred cccCCEEEEeChhhhcC
Confidence 34679999999999853
No 214
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.27 E-value=0.026 Score=65.28 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEeecCCcchhhhhh--hhh-ccCCeEEEEcCchHHHHH
Q 005742 173 SLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQI--PAL-LTGKVVVVISPLISLMHD 228 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g-~d~iv~a~TGsGKTl~~~l--p~l-~~~~~vLvl~Pt~~L~~q 228 (679)
.+++-|++|+..++.+ +-++|.++.|+|||.+.-. -++ ..+..+++++||---+..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHH
Confidence 6899999999999874 5679999999999964322 122 357899999999654443
No 215
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.23 E-value=0.014 Score=68.49 Aligned_cols=57 Identities=25% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCC-EEEEeecCCcchhhhhh--hhh-ccCCeEEEEcCchHHHH
Q 005742 170 GHSSLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCFQI--PAL-LTGKVVVVISPLISLMH 227 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~g~d-~iv~a~TGsGKTl~~~l--p~l-~~~~~vLvl~Pt~~L~~ 227 (679)
|+ .|++-|++|+..++.+++ ++|.+..|+|||.+.-. -++ ..+..++.++||---+.
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~ 404 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAE 404 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHH
Confidence 54 699999999999998654 68999999999975221 111 25789999999965443
No 216
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.19 E-value=0.0078 Score=63.62 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEeecCCcchhhhhhhh--h-ccCCeEEEEcCchHHHH
Q 005742 173 SLKNFQKEALSAW------LAHHDCLVLAATGSGKSLCFQIPA--L-LTGKVVVVISPLISLMH 227 (679)
Q Consensus 173 ~~~~~Q~~ai~~~------l~g~d~iv~a~TGsGKTl~~~lp~--l-~~~~~vLvl~Pt~~L~~ 227 (679)
+|++-|++++..+ .++.++++.++-|+|||+.+-... + ..+..+++++||-.-|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHH
Confidence 3778899998887 467889999999999997543221 1 24678999999965443
No 217
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.15 E-value=0.0074 Score=62.45 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh---hc----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCC
Q 005742 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA---LL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~---l~----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 246 (679)
|++-|.+++.. ...+++|.|..|||||.+.+.-+ +. ...++|+|++|+..+.++..++....-.... .
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~---~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQ---E 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH---C
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccc---c
Confidence 57889999988 57799999999999998654322 22 3468999999999999998888773111000 0
Q ss_pred CCcHHHHHHHHcCCccEEEEChHHHHH-HHHHHHHHHhhc--CceEEEeeccc
Q 005742 247 QPDNKVEQKALRGMYSIIYVCPETVIR-LIKPLQRLAESR--GIALFAIDEVH 296 (679)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~~~~~~~~~~--~~~lvViDEaH 296 (679)
................+.|.|...+.. ++. ...... .-.+-++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~---~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 SSDNERLRRQLSNIDRIYISTFHSFCYRLLR---EYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHH---HHHGGTTSHTTTEEECHHH
T ss_pred ccccccccccccccchheeehhhhhhhhhhh---hhhhhhhccccceeecchh
Confidence 000011112222235688999887764 333 221221 22456666666
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.10 E-value=0.021 Score=51.19 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.4
Q ss_pred CCCEEEEeecCCcchhhh
Q 005742 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999644
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.06 E-value=0.16 Score=54.58 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=68.2
Q ss_pred CCCEEEEeecCCcchhhhh-hhh-hc---cCCeEEEEc-Cc-hHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcC
Q 005742 188 HHDCLVLAATGSGKSLCFQ-IPA-LL---TGKVVVVIS-PL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~-l~---~~~~vLvl~-Pt-~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
++.+++++|||+|||.+.. +.. +. .+.++.+|. .+ +.-+.++...+.+ .++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 4567899999999996544 222 21 234444443 22 3223333333322 33322
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEcc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT 339 (679)
..+.++..+...+. .+.+.++|+||.+-+... -......+..+.... ..+....+.++||
T Consensus 282 ---~~~~~~~~l~~~l~------~~~~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~-------~~~~~~~LVl~a~ 341 (424)
T PRK05703 282 ---EVVYDPKELAKALE------QLRDCDVILIDTAGRSQR----DKRLIEELKALIEFS-------GEPIDVYLVLSAT 341 (424)
T ss_pred ---EccCCHHhHHHHHH------HhCCCCEEEEeCCCCCCC----CHHHHHHHHHHHhcc-------CCCCeEEEEEECC
Confidence 12234443333332 234689999999876431 122333343333210 1113347899999
Q ss_pred CChhhHHHHHHHcCCC
Q 005742 340 ATIQVREDILKSLHMS 355 (679)
Q Consensus 340 ~~~~~~~~i~~~l~~~ 355 (679)
........+...+...
T Consensus 342 ~~~~~l~~~~~~f~~~ 357 (424)
T PRK05703 342 TKYEDLKDIYKHFSRL 357 (424)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9988888887777543
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.05 E-value=0.011 Score=52.66 Aligned_cols=38 Identities=24% Similarity=0.115 Sum_probs=26.2
Q ss_pred CCCEEEEeecCCcchhhhhhhhhc-cCC--eEEEEcCchHH
Q 005742 188 HHDCLVLAATGSGKSLCFQIPALL-TGK--VVVVISPLISL 225 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l~-~~~--~vLvl~Pt~~L 225 (679)
+..+++.+|+|+|||......+.. ... .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 467899999999999876544433 222 57777776544
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=95.93 E-value=0.056 Score=53.29 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=13.0
Q ss_pred CCEEEEeecCCcchh
Q 005742 189 HDCLVLAATGSGKSL 203 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl 203 (679)
..+++++|+|+|||-
T Consensus 46 ~~l~l~G~~G~GKTH 60 (234)
T PRK05642 46 SLIYLWGKDGVGRSH 60 (234)
T ss_pred CeEEEECCCCCCHHH
Confidence 467899999999994
No 222
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.28 Score=49.14 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=72.1
Q ss_pred CCCEEEEeecCCcchhhhhhhhh--c-cCCeEEEEcC-c--hHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCc
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL--L-TGKVVVVISP-L--ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY 261 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l--~-~~~~vLvl~P-t--~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (679)
+..+.+++++|+|||..+...+. . .+.++.++.- + ...+.|+.......++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~---------------------- 132 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE---------------------- 132 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCce----------------------
Confidence 45788999999999986654332 1 3444544443 2 24556665544443322
Q ss_pred cEEE-EChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccC
Q 005742 262 SIIY-VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340 (679)
Q Consensus 262 ~Ili-~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 340 (679)
+.. .++..+...+.. .....+.++||||-+=+... -...+..+..+.... .+..-.+.++||.
T Consensus 133 -~~~~~~~~~l~~~l~~---l~~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~--------~~~~~~LVl~a~~ 196 (270)
T PRK06731 133 -VIAVRDEAAMTRALTY---FKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQV--------EPDYICLTLSASM 196 (270)
T ss_pred -EEecCCHHHHHHHHHH---HHhcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhh--------CCCeEEEEEcCcc
Confidence 222 245544433332 22234689999999877632 133445554443322 2233477899998
Q ss_pred ChhhHHHHHHHcC
Q 005742 341 TIQVREDILKSLH 353 (679)
Q Consensus 341 ~~~~~~~i~~~l~ 353 (679)
..+...++.+.++
T Consensus 197 ~~~d~~~~~~~f~ 209 (270)
T PRK06731 197 KSKDMIEIITNFK 209 (270)
T ss_pred CHHHHHHHHHHhC
Confidence 7776666666654
No 223
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.079 Score=55.45 Aligned_cols=124 Identities=18% Similarity=0.122 Sum_probs=64.0
Q ss_pred CCCEEEEeecCCcchhhhhhhhh----ccC-CeEEEEc-Cc-hHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcC
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL----LTG-KVVVVIS-PL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l----~~~-~~vLvl~-Pt-~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
|..+++++|||+|||.+....+. ..+ .++.++. .+ +.-+.++.+.+.+ +++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~------------------ 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH------------------ 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE------------------
Confidence 56789999999999976543331 223 2443333 22 2223444444333 343322
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHH-HHHHHHHHHhhccccccccCCCCCEEEEEc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD-YRRLSVLRENFGANNLKSLKFDIPLMALTA 338 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~lSA 338 (679)
.+-+++.+...+ ..+.+.++|+||++-+.. .... ...+..+.. ...+...+|.++|
T Consensus 199 ----~~~~~~~l~~~l------~~l~~~DlVLIDTaG~~~-----~d~~l~e~La~L~~--------~~~~~~~lLVLsA 255 (374)
T PRK14722 199 ----AVKDGGDLQLAL------AELRNKHMVLIDTIGMSQ-----RDRTVSDQIAMLHG--------ADTPVQRLLLLNA 255 (374)
T ss_pred ----ecCCcccHHHHH------HHhcCCCEEEEcCCCCCc-----ccHHHHHHHHHHhc--------cCCCCeEEEEecC
Confidence 233333332222 234567999999996542 1111 222222211 1111234889999
Q ss_pred cCChhhHHHHHHHc
Q 005742 339 TATIQVREDILKSL 352 (679)
Q Consensus 339 T~~~~~~~~i~~~l 352 (679)
|.......++...+
T Consensus 256 ts~~~~l~evi~~f 269 (374)
T PRK14722 256 TSHGDTLNEVVQAY 269 (374)
T ss_pred ccChHHHHHHHHHH
Confidence 99888777665443
No 224
>PRK04296 thymidine kinase; Provisional
Probab=95.76 E-value=0.07 Score=50.70 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcC
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISP 221 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~P 221 (679)
.-.++.+|+|+|||...+-.+. ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3468899999999975543332 35778888866
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.75 E-value=0.056 Score=54.19 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.4
Q ss_pred HHhhcCceEEEeecccccccC
Q 005742 281 LAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 281 ~~~~~~~~lvViDEaH~l~~~ 301 (679)
.+..-+++++||||.|.++..
T Consensus 140 llr~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred HHHHcCCcEEEeechHHHhcc
Confidence 344557999999999998653
No 226
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.75 E-value=0.093 Score=46.21 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=12.9
Q ss_pred EEEEeecCCcchhhh
Q 005742 191 CLVLAATGSGKSLCF 205 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~ 205 (679)
+++.+|.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999754
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.024 Score=56.51 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHH-------cCCCEEEEeecCCcchhhhhhhh--hccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 170 GHSSLKNFQKEALSAWL-------AHHDCLVLAATGSGKSLCFQIPA--LLTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l-------~g~d~iv~a~TGsGKTl~~~lp~--l~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.|.-....++.++..+. +++++++.+|+|+|||..+...+ +.+.+.-++.+++.+|+.+....+..
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 34344445555544332 56799999999999996433221 22445555555666666665554443
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.74 E-value=0.12 Score=50.24 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.9
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
+...++++||.+|.+.+
T Consensus 95 ~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HCTSSEEEEETGGGGTT
T ss_pred hhcCCEEEEecchhhcC
Confidence 56899999999999864
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.71 E-value=0.3 Score=50.98 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=77.2
Q ss_pred CCCEEEEeecCCcchhhhh-hhhh----c-cCCeEEEEcCc-hHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcC
Q 005742 188 HHDCLVLAATGSGKSLCFQ-IPAL----L-TGKVVVVISPL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~l----~-~~~~vLvl~Pt-~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
++.+.+++|||-|||.+-. |++. . +.+..||-..| |.=+..|...+.+ .++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp-------------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP-------------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc--------------------
Confidence 5678899999999996543 2221 1 33455555555 3334444444444 2333
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEcc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT 339 (679)
-.++-+|.-|..-+. .+.+.++|.+|=+-+=. . +-..+..+.+.+.. ..+..-.|.||||
T Consensus 263 --~~vv~~~~el~~ai~------~l~~~d~ILVDTaGrs~------~-D~~~i~el~~~~~~-----~~~i~~~Lvlsat 322 (407)
T COG1419 263 --LEVVYSPKELAEAIE------ALRDCDVILVDTAGRSQ------Y-DKEKIEELKELIDV-----SHSIEVYLVLSAT 322 (407)
T ss_pred --eEEecCHHHHHHHHH------HhhcCCEEEEeCCCCCc------c-CHHHHHHHHHHHhc-----cccceEEEEEecC
Confidence 345556665543333 45667999999665431 1 12233333333321 1112336999999
Q ss_pred CChhhHHHHHHHcCCCCCceEEec
Q 005742 340 ATIQVREDILKSLHMSKGTKFVLT 363 (679)
Q Consensus 340 ~~~~~~~~i~~~l~~~~~~~~~~~ 363 (679)
.......++...+..-+-..++.+
T Consensus 323 ~K~~dlkei~~~f~~~~i~~~I~T 346 (407)
T COG1419 323 TKYEDLKEIIKQFSLFPIDGLIFT 346 (407)
T ss_pred cchHHHHHHHHHhccCCcceeEEE
Confidence 999999999988876544444433
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.68 E-value=0.13 Score=53.09 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.8
Q ss_pred cCCCEEEEeecCCcchhhh
Q 005742 187 AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~ 205 (679)
.+.++++.+|||+|||..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS 200 (329)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 3578999999999999643
No 231
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.026 Score=58.08 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.0
Q ss_pred CCEEEEeecCCcchhhhhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~ 209 (679)
.+.|+++|.|+|||..+-+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH
Confidence 378999999999998765444
No 232
>PHA02533 17 large terminase protein; Provisional
Probab=95.64 E-value=0.043 Score=60.57 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhhh-----ccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l-----~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.|.|+|++.+..+..++-.++..+-..|||.+....++ ..+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 58899999998876667778899999999976543222 3567999999999988888777764
No 233
>PRK12377 putative replication protein; Provisional
Probab=95.62 E-value=0.12 Score=51.24 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCEEEEeecCCcchhhhhhhh--hc-cCCeEEEEcCchHHHHHHH
Q 005742 189 HDCLVLAATGSGKSLCFQIPA--LL-TGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~--l~-~~~~vLvl~Pt~~L~~q~~ 230 (679)
.++++.+|+|+|||..+...+ +. .+..+ +.++..+|+.+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHH
Confidence 578999999999995332211 22 33333 3344445555443
No 234
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.33 Score=52.81 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=32.3
Q ss_pred hcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcC
Q 005742 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 353 (679)
+.+.++||||.+-+... -......+..+.... ....++.++++.......++.+.+.
T Consensus 426 l~~~DLVLIDTaG~s~~----D~~l~eeL~~L~aa~---------~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQR----DRALAAQLNWLRAAR---------QVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred hccCCEEEecCCCcchh----hHHHHHHHHHHHHhh---------cCCcEEEEECCCChhHHHHHHHHHH
Confidence 35689999999976531 011222222222111 1356889999987666666655543
No 235
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.3 Score=50.86 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=64.4
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEc-Cc-hHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCc
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVIS-PL-ISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY 261 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~-Pt-~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (679)
++.+++++|+|+|||.+....+. ..+.++.++. .+ |.= +.||.......++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv--------------------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL--------------------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE---------------------
Confidence 45678999999999965443221 2344444433 22 221 233333333233221
Q ss_pred cEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCC
Q 005742 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (679)
Q Consensus 262 ~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 341 (679)
.+..+|+.+...+.. .....+.++|+||=+-+... -...+..+..+.... .+..-.+.+|||..
T Consensus 265 -~~~~dp~dL~~al~~---l~~~~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~--------~p~~~~LVLsag~~ 328 (407)
T PRK12726 265 -IVATSPAELEEAVQY---MTYVNCVDHILIDTVGRNYL----AEESVSEISAYTDVV--------HPDLTCFTFSSGMK 328 (407)
T ss_pred -EecCCHHHHHHHHHH---HHhcCCCCEEEEECCCCCcc----CHHHHHHHHHHhhcc--------CCceEEEECCCccc
Confidence 122356655443331 11235689999998766531 234445554443322 22333567787776
Q ss_pred hhhHHHHHHHcC
Q 005742 342 IQVREDILKSLH 353 (679)
Q Consensus 342 ~~~~~~i~~~l~ 353 (679)
.....++.+.+.
T Consensus 329 ~~d~~~i~~~f~ 340 (407)
T PRK12726 329 SADVMTILPKLA 340 (407)
T ss_pred HHHHHHHHHhcC
Confidence 655555554443
No 236
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.50 E-value=0.021 Score=56.06 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHhcC---CceEEEcCCCCcHHHHHHHHc-CCccEEEEChHHHHHHHHHHHHHHhhcCce
Q 005742 213 GKVVVVISPLISLMHDQCSKLSKHG---VTACFLGSGQPDNKVEQKALR-GMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (679)
Q Consensus 213 ~~~vLvl~Pt~~L~~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~ 288 (679)
.+.+|||+..--=+.++.+.++.+. ..+.-+..-...-..+...+. ...+|.|+||+++..+++ .+.+.+.++.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle--~~~L~l~~l~ 203 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLE--NGALSLSNLK 203 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHH--cCCCCcccCe
Confidence 5678888887444889999998873 233333333323333334444 578999999999999998 7888899999
Q ss_pred EEEeecccc
Q 005742 289 LFAIDEVHC 297 (679)
Q Consensus 289 lvViDEaH~ 297 (679)
+||||--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999997663
No 237
>PRK06921 hypothetical protein; Provisional
Probab=95.46 E-value=0.24 Score=49.80 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.8
Q ss_pred CCCEEEEeecCCcchhh
Q 005742 188 HHDCLVLAATGSGKSLC 204 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~ 204 (679)
+.++++.+++|+|||..
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56799999999999953
No 238
>PRK08116 hypothetical protein; Validated
Probab=95.32 E-value=0.31 Score=49.03 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.6
Q ss_pred CEEEEeecCCcchhhh
Q 005742 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.+++|+|||..+
T Consensus 116 gl~l~G~~GtGKThLa 131 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA 131 (268)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999644
No 239
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.23 E-value=0.012 Score=71.11 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=79.3
Q ss_pred CcEEEEeCchhHHHHHHHHHHhCC-CcEEEecCCC-----------CHHHHHHHHHHHhCCCeeEEEEecccccCccccc
Q 005742 513 GLTIIYVPTRKETLSIAKYLCGFG-VKAAAYNASL-----------PKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN 580 (679)
Q Consensus 513 ~~~IVF~~t~~~~~~l~~~L~~~~-~~~~~~hg~~-----------~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~ 580 (679)
-..|+||+.+..+..+.+.++... ..+..+.|.+ .+-.+.+++..|+...+++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 368999999999999999888742 2233344433 2334688999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhhccccCC
Q 005742 581 VRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (679)
Q Consensus 581 v~~VI~~d~p~s~~~y~Qr~GRagR~G 607 (679)
++.|+.++.|.....|+|+.||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997764
No 240
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.21 E-value=0.16 Score=54.99 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=13.8
Q ss_pred cCceEEEeeccccccc
Q 005742 285 RGIALFAIDEVHCVSK 300 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~ 300 (679)
...++++|||+|.+.+
T Consensus 201 ~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 201 RNVDALFIEDIEVFSG 216 (445)
T ss_pred ccCCEEEEcchhhhcC
Confidence 4689999999999865
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.19 E-value=0.094 Score=51.47 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=14.0
Q ss_pred CCCEEEEeecCCcchh
Q 005742 188 HHDCLVLAATGSGKSL 203 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl 203 (679)
++.+++.+|+|+|||.
T Consensus 42 ~~~~~l~G~~G~GKT~ 57 (227)
T PRK08903 42 DRFFYLWGEAGSGRSH 57 (227)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3579999999999995
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.13 E-value=0.25 Score=45.13 Aligned_cols=35 Identities=34% Similarity=0.325 Sum_probs=24.2
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHH
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISL 225 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L 225 (679)
+++.+++|+|||......+. ..++.++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 57899999999975433222 257788887765544
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.11 E-value=0.3 Score=46.14 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=33.2
Q ss_pred EEEEeecCCcchhhhh---hhhhccCCeEEEEcCchHHHHHHHHHHHhcCC
Q 005742 191 CLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~---lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~ 238 (679)
+++.+|+|+|||...+ ...+..+..+++++.. +-..+..+.+..+|+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~ 51 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGW 51 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCC
Confidence 6899999999997543 2334567888888653 556777777776654
No 244
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.01 E-value=0.054 Score=60.37 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHH-HHHHhc----CCceE
Q 005742 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQC-SKLSKH----GVTAC 241 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~-~~l~~~----~~~~~ 241 (679)
..+|||.+.+.++-.. +.+.++.++-+|||.+.+..+. .....+|++.||..++.+.. .+|... ..-..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~ 95 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRR 95 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 6789999999887754 5788999999999986554443 35789999999999998876 344432 10001
Q ss_pred EEcC---CCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccccc----CCCCchHHHHHHHH
Q 005742 242 FLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK----WGHDFRPDYRRLSV 314 (679)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~----~g~~f~~~~~~l~~ 314 (679)
.+.. .........+.+.++ .+.++....- ..+....++++++||++.+.. .|..+.....+.
T Consensus 96 ~~~~~~~~~~~~t~~~k~f~gg-~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~-- 164 (557)
T PF05876_consen 96 KLSPSKSRDSGNTILYKRFPGG-FLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRT-- 164 (557)
T ss_pred HhCchhhcccCCchhheecCCC-EEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHHHH--
Confidence 1111 111112222333333 3444333211 122344689999999999832 343333333332
Q ss_pred HHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHc
Q 005742 315 LRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (679)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l 352 (679)
+.|. ....+++..||+......|...+
T Consensus 165 --~tf~---------~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 165 --KTFG---------SNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred --hhhc---------cCcEEEEeCCCCCCCCCHHHHHH
Confidence 2221 34678888898876444444443
No 245
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.42 Score=50.98 Aligned_cols=128 Identities=19% Similarity=0.146 Sum_probs=66.9
Q ss_pred CCCEEEEeecCCcchhhhhhhh-h---cc--CCeEEEEcCchHH-HHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcC
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA-L---LT--GKVVVVISPLISL-MHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~-l---~~--~~~vLvl~Pt~~L-~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
|+-+.+++|||+|||.+....+ . .. ....++...+.-. ..+|...+.+ +++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~------------------ 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR------------------ 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee------------------
Confidence 4568899999999997654222 1 11 2345555555222 3333333333 343322
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEcc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT 339 (679)
.+-++..+... ...+.+.++++||.+-+. +.-......+..+... ..+...+|.|+||
T Consensus 253 ----~v~~~~dl~~a------l~~l~~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~--------~~~~~~~LVl~at 310 (420)
T PRK14721 253 ----SIKDIADLQLM------LHELRGKHMVLIDTVGMS----QRDQMLAEQIAMLSQC--------GTQVKHLLLLNAT 310 (420)
T ss_pred ----cCCCHHHHHHH------HHHhcCCCEEEecCCCCC----cchHHHHHHHHHHhcc--------CCCceEEEEEcCC
Confidence 22233322221 223567899999986322 1112233333332211 1123457899999
Q ss_pred CChhhHHHHHHHcCCC
Q 005742 340 ATIQVREDILKSLHMS 355 (679)
Q Consensus 340 ~~~~~~~~i~~~l~~~ 355 (679)
.......++...+...
T Consensus 311 ~~~~~~~~~~~~f~~~ 326 (420)
T PRK14721 311 SSGDTLDEVISAYQGH 326 (420)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9888888877766533
No 246
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.95 E-value=0.24 Score=49.74 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++.+|+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999765
No 247
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.94 E-value=0.39 Score=54.95 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.3
Q ss_pred cCceEEEeeccccccc
Q 005742 285 RGIALFAIDEVHCVSK 300 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~ 300 (679)
..+.+|||||+|.+..
T Consensus 868 r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 868 RNVSILIIDEIDYLIT 883 (1164)
T ss_pred ccceEEEeehHhhhCc
Confidence 3467999999999975
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.47 Score=49.21 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHcCC----CEEEEeecCCcchhhh
Q 005742 173 SLKNFQKEALSAWLAHH----DCLVLAATGSGKSLCF 205 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~----d~iv~a~TGsGKTl~~ 205 (679)
.++|+|...+..+++.. -.++.+|.|.|||..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 35799999998887542 3789999999999654
No 249
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.84 E-value=0.45 Score=46.58 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCCEEEEeecCCcchhhhh---hhhhcc-CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccE
Q 005742 188 HHDCLVLAATGSGKSLCFQ---IPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~---lp~l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 263 (679)
|.-+++.+++|+|||...+ ...+.. +.++++++- .+-..+..+.+..+++... .....+...+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~------------~~~~~g~l~~ 85 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE------------EYEDSGKLKI 85 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH------------HHHHTTSEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH------------HHhhcCCEEE
Confidence 4678999999999996433 233456 888888885 3445777788887764310 0011111222
Q ss_pred EEEChH-------HHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 264 IYVCPE-------TVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 264 li~Tp~-------~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
+=+.+. .+..++..+.......+.+.+|||-...+
T Consensus 86 ~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 86 IDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp EESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred EecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 222222 23344444444445556699999999888
No 250
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.81 E-value=1.2 Score=45.96 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=67.2
Q ss_pred CCCEEEEeecCCcchhhhhhh-hh--ccCCeEEEEc-Cc-hHHHHHHHHHH-HhcCCceEEEcCCCCcHHHHHHHHcCCc
Q 005742 188 HHDCLVLAATGSGKSLCFQIP-AL--LTGKVVVVIS-PL-ISLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMY 261 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp-~l--~~~~~vLvl~-Pt-~~L~~q~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (679)
++-+++++|+|+|||.+.... .. ..+++|+++. .+ +.-+.++...+ ...++..+....+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~-------------- 179 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGA-------------- 179 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCC--------------
Confidence 345778999999999755432 22 2456666654 33 44443443333 33444433222111
Q ss_pred cEEEEChHH-HHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccC
Q 005742 262 SIIYVCPET-VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340 (679)
Q Consensus 262 ~Ili~Tp~~-l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 340 (679)
.|.. ..+.+. .....++++||||=+-++.... .....+..+..+.... -...+...++.++||.
T Consensus 180 -----dpa~~v~~~l~----~~~~~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~-----~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 180 -----DPASVAFDAIQ----AAKARGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKA-----DPDAPHEVLLVLDATT 244 (318)
T ss_pred -----CHHHHHHHHHH----HHHhCCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhh-----cCCCCceEEEEEECCC
Confidence 1111 111111 1124678999999888774211 0223334433332211 0112244579999998
Q ss_pred ChhhHHHHHHHc
Q 005742 341 TIQVREDILKSL 352 (679)
Q Consensus 341 ~~~~~~~i~~~l 352 (679)
..+.........
T Consensus 245 g~~~~~~a~~f~ 256 (318)
T PRK10416 245 GQNALSQAKAFH 256 (318)
T ss_pred ChHHHHHHHHHH
Confidence 776555544443
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.76 E-value=0.15 Score=54.98 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=13.4
Q ss_pred CEEEEeecCCcchhhh
Q 005742 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
.+++.+|+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 5789999999999543
No 252
>PRK05973 replicative DNA helicase; Provisional
Probab=94.76 E-value=0.48 Score=46.39 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=35.7
Q ss_pred HcCCCEEEEeecCCcchhhhhhh---hhccCCeEEEEcCchHHHHHHHHHHHhcCC
Q 005742 186 LAHHDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~~lp---~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~ 238 (679)
..|.-++|.+++|+|||...+-. +...+.+++|++---. ..|..+++..+++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~g~ 116 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRALGA 116 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHcCC
Confidence 34566889999999999754422 2346778888865433 5777777777754
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.75 E-value=0.34 Score=47.33 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.2
Q ss_pred CCCEEEEeecCCcchhhh
Q 005742 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+..+++.+|+|+|||..+
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999644
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.74 E-value=0.45 Score=46.98 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=19.8
Q ss_pred CCEEEEeecCCcchhhhhhhh--h-ccCCeEEEE
Q 005742 189 HDCLVLAATGSGKSLCFQIPA--L-LTGKVVVVI 219 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~--l-~~~~~vLvl 219 (679)
..+++.+++|+|||..+...+ + ..+..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999995433222 2 245555555
No 255
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.70 E-value=0.24 Score=50.28 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.5
Q ss_pred CEEEEeecCCcchhhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPAL 210 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l 210 (679)
.+|+++|.|+|||..+-+.+.
T Consensus 164 SmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred ceEEecCCCCchHHHHHHHHh
Confidence 689999999999976544443
No 256
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.69 E-value=0.043 Score=58.61 Aligned_cols=57 Identities=30% Similarity=0.324 Sum_probs=47.7
Q ss_pred CEEEEeecCCcchhhhhhhhhc-cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCC
Q 005742 190 DCLVLAATGSGKSLCFQIPALL-TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l~-~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 246 (679)
+++++||||+|||..+++|.+. ....+||+=|.-++.......+++.|..+.++.-.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP~ 58 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDPT 58 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcCC
Confidence 4789999999999999999875 46789999999999988888878778777776543
No 257
>PLN03025 replication factor C subunit; Provisional
Probab=94.68 E-value=0.43 Score=49.53 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
.++++.+|.|+|||..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999996543
No 258
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.65 E-value=0.1 Score=59.90 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeCC
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d~ 589 (679)
+.++||.++++..+..+.+.|.+ .+..+..+||+++..+|.+......+|..+|+|+|..+- -+.+.++.+||.-+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 45899999999999999999987 478899999999999999999999999999999997432 256778888886553
No 259
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.64 E-value=0.089 Score=60.51 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-cccCcccccccEEEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRIIH 586 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~~~GiDip~v~~VI~ 586 (679)
+.+++|.+||+.-+...++.+.+ .++.+..+||+++..+|..+++.+.+|+..|+|+|.. +...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 56899999999999888887665 4789999999999999999999999999999999965 555678889999885
Q ss_pred eC
Q 005742 587 YG 588 (679)
Q Consensus 587 ~d 588 (679)
-.
T Consensus 390 DE 391 (681)
T PRK10917 390 DE 391 (681)
T ss_pred ec
Confidence 43
No 260
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.63 E-value=0.13 Score=52.93 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhh--hhhhh---ccCCeEEEEcCchHHH
Q 005742 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCF--QIPAL---LTGKVVVVISPLISLM 226 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~--~lp~l---~~~~~vLvl~Pt~~L~ 226 (679)
.+++.|.+.+..++. +.+++++++||||||... ++..+ ..+.+++.+=.+.+|.
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 477888888877664 569999999999999532 22222 2456788888777763
No 261
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.62 Score=48.77 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.9
Q ss_pred hcCceEEEeecccccc
Q 005742 284 SRGIALFAIDEVHCVS 299 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~ 299 (679)
...++++||||||.|.
T Consensus 139 ~g~~rVviIDeAd~l~ 154 (351)
T PRK09112 139 DGNWRIVIIDPADDMN 154 (351)
T ss_pred cCCceEEEEEchhhcC
Confidence 4578999999999995
No 262
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.60 E-value=0.15 Score=60.57 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhhhhh--hh-ccCCeEEEEcCchHHHHH
Q 005742 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIP--AL-LTGKVVVVISPLISLMHD 228 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~~lp--~l-~~~~~vLvl~Pt~~L~~q 228 (679)
.|++-|.+|+..+.. ++-++|.++-|+|||.+.-.. ++ ..+.+++.++||-.-+..
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEG 440 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHH
Confidence 699999999998864 456889999999999753322 12 357899999999554433
No 263
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.60 E-value=0.86 Score=49.07 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=28.6
Q ss_pred ceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHH
Q 005742 287 IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDI 348 (679)
Q Consensus 287 ~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i 348 (679)
.++||||.+-+... -...+..+..+.... .++.-++.+.||.........
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~--------~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAV--------KPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHh--------cccceeEEEeccccHHHHHHH
Confidence 48999999966532 133344444443322 224557888888876544433
No 264
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.58 E-value=0.029 Score=55.51 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHHHHH---cCC---CEEEEeecCCcchhhhhhhh
Q 005742 177 FQKEALSAWL---AHH---DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 177 ~Q~~ai~~~l---~g~---d~iv~a~TGsGKTl~~~lp~ 209 (679)
.|..++..+. .++ +.+..+|.|+|||-++.+.+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHH
Confidence 4555554433 233 68999999999998775544
No 265
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.4 Score=51.75 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.6
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+++|.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998765544
No 266
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.3 Score=55.27 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.8
Q ss_pred cCceEEEeeccccccc
Q 005742 285 RGIALFAIDEVHCVSK 300 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~ 300 (679)
.+++++||||+|.|..
T Consensus 118 gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN 133 (830)
T ss_pred CCceEEEEeChhhCCH
Confidence 4689999999999964
No 267
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.53 E-value=0.37 Score=52.37 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.0
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
....+++||||+|.+..
T Consensus 204 ~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSY 220 (450)
T ss_pred hccCCEEEEeccccccC
Confidence 35689999999998853
No 268
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.51 E-value=0.067 Score=57.49 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=57.7
Q ss_pred EEeecCCcchhhhhhhhhc---cC-CeEEEEcCchHHHHHHHHHHHh-----cCCceEEEcCCCCcH--HH-HHHHHcCC
Q 005742 193 VLAATGSGKSLCFQIPALL---TG-KVVVVISPLISLMHDQCSKLSK-----HGVTACFLGSGQPDN--KV-EQKALRGM 260 (679)
Q Consensus 193 v~a~TGsGKTl~~~lp~l~---~~-~~vLvl~Pt~~L~~q~~~~l~~-----~~~~~~~~~~~~~~~--~~-~~~~~~~~ 260 (679)
..++||||||++..-.++. +| ...|+.|.....+......+.. +-..-.+...+.... .. ...--...
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 4589999999865544442 22 4778888877776665554422 100000001110000 00 00002245
Q ss_pred ccEEEEChHHHHHHHHHHH-H---HHhhcCceEEEe-ecccccc
Q 005742 261 YSIIYVCPETVIRLIKPLQ-R---LAESRGIALFAI-DEVHCVS 299 (679)
Q Consensus 261 ~~Ili~Tp~~l~~ll~~~~-~---~~~~~~~~lvVi-DEaH~l~ 299 (679)
..|+++|.+.|...+...+ + ..++.+..+|.+ ||||++.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 6899999999986554221 1 234455666554 9999994
No 269
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.51 E-value=0.093 Score=55.68 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.9
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++.+|+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 270
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.49 E-value=0.1 Score=57.58 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=64.7
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccccccEEEEeC
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG 588 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~d 588 (679)
+.++||.+|++..+..+++.|.+. +..+..+||+++..+|.+......+|+.+|+|+|..+-. ..++++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 458999999999999999999864 778999999999999999999999999999999975332 4577888888554
No 271
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.43 E-value=0.21 Score=49.88 Aligned_cols=106 Identities=23% Similarity=0.400 Sum_probs=60.1
Q ss_pred HHHHHHHcC-----CCEEEEeecCCcchh-hhhhhhh--c------cCCeEEEEcCchHHHHHHHHHH-HhcCCceEEEc
Q 005742 180 EALSAWLAH-----HDCLVLAATGSGKSL-CFQIPAL--L------TGKVVVVISPLISLMHDQCSKL-SKHGVTACFLG 244 (679)
Q Consensus 180 ~ai~~~l~g-----~d~iv~a~TGsGKTl-~~~lp~l--~------~~~~vLvl~Pt~~L~~q~~~~l-~~~~~~~~~~~ 244 (679)
..+..+|.| .=+=+++|.|+|||- |..+.+- . .++++++|--....-.+-...+ ++++..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~----- 99 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD----- 99 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS------
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc-----
Confidence 366777754 234589999999994 4333321 1 3578999875554422222222 222211
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
....+..-.-+-+.+.+.+..++..+...+.-.++++||||-+=.+
T Consensus 100 --------~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 100 --------PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp --------HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred --------cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1122332222333456667777776666666678999999988766
No 272
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.22 Score=52.29 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.|+++.++||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 37999999999999764
No 273
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.35 E-value=0.34 Score=52.58 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.6
Q ss_pred CCEEEEeecCCcchhh
Q 005742 189 HDCLVLAATGSGKSLC 204 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~ 204 (679)
..+++.+|+|+|||..
T Consensus 131 n~l~lyG~~G~GKTHL 146 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_pred CeEEEEcCCCCcHHHH
Confidence 3589999999999954
No 274
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.33 E-value=0.31 Score=49.28 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=55.1
Q ss_pred HcCCCEEEEeecCCcchhhhh-hhh--hcc-CCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcC-CCCcHHHHH---H
Q 005742 186 LAHHDCLVLAATGSGKSLCFQ-IPA--LLT-GKVVVVISPLISLMHDQCSKLSKH--GVTACFLGS-GQPDNKVEQ---K 255 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~~-lp~--l~~-~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~-~~~~~~~~~---~ 255 (679)
..|.-+++.+++|+|||...+ +.. ... +..++++.-- .-..+...++... ++....... ......... .
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 456788999999999996433 222 123 7788888742 2234444444332 222111100 011111111 1
Q ss_pred HHcCCccEEEE-ChH--HHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 256 ALRGMYSIIYV-CPE--TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 256 ~~~~~~~Ili~-Tp~--~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
.+.....+.+. .++ .+..++..+.......++++||||..+.+..
T Consensus 107 ~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 107 EFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 11111222222 121 2223333333333345799999999998854
No 275
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.32 E-value=0.097 Score=55.74 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHcCCCEEEEeecCCcchhhhh
Q 005742 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 175 ~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~ 206 (679)
.......+..+..++++++.+|+|+|||..+.
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34455566667778999999999999997654
No 276
>PF13173 AAA_14: AAA domain
Probab=94.31 E-value=0.12 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=17.3
Q ss_pred CceEEEeecccccccCCCCchHHHHHH
Q 005742 286 GIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 286 ~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
.-.+|+|||+|.+.+ +...+..+
T Consensus 61 ~~~~i~iDEiq~~~~----~~~~lk~l 83 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD----WEDALKFL 83 (128)
T ss_pred CCcEEEEehhhhhcc----HHHHHHHH
Confidence 578999999999976 45555555
No 277
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.29 E-value=1.8 Score=43.66 Aligned_cols=134 Identities=20% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCEEEEeecCCcchhhhhhhhh---ccCCeEEEEc--CchHHHHHHHHHH-HhcCCceEEEcCCCCcHHHHHHHHcCCcc
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVIS--PLISLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~--Pt~~L~~q~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (679)
+-+++++|+|+|||.+....+. ..+.+++++. +.|.-+.++...+ ...++.......+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~--------------- 137 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGA--------------- 137 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCC---------------
Confidence 3467789999999975543332 3456666665 3455444444444 44454433222111
Q ss_pred EEEEChHHH-HHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCC
Q 005742 263 IIYVCPETV-IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (679)
Q Consensus 263 Ili~Tp~~l-~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 341 (679)
.|..+ ...+. .....+.++||||=+-+... =...+..+..+.+.... .....++--++.++||..
T Consensus 138 ----dp~~~~~~~l~----~~~~~~~D~ViIDT~G~~~~----d~~~~~el~~~~~~~~~--~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 138 ----DPAAVAFDAIQ----KAKARNIDVVLIDTAGRLQN----KVNLMDELKKIKRVIKK--VDKDAPDEVLLVLDATTG 203 (272)
T ss_pred ----CHHHHHHHHHH----HHHHCCCCEEEEeCCCCCcc----hHHHHHHHHHHHHHHhc--ccCCCCceEEEEEECCCC
Confidence 11111 11111 12245689999998877642 12223333333322110 001112445789999976
Q ss_pred hhhHHHHHHH
Q 005742 342 IQVREDILKS 351 (679)
Q Consensus 342 ~~~~~~i~~~ 351 (679)
.........+
T Consensus 204 ~~~~~~~~~f 213 (272)
T TIGR00064 204 QNALEQAKVF 213 (272)
T ss_pred HHHHHHHHHH
Confidence 6655544433
No 278
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.26 E-value=0.2 Score=54.07 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.1
Q ss_pred CEEEEeecCCcchhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
.+++.+|+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999976543
No 279
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.24 E-value=0.23 Score=54.25 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.6
Q ss_pred CCEEEEeecCCcchhh
Q 005742 189 HDCLVLAATGSGKSLC 204 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~ 204 (679)
..+++.+|+|+|||..
T Consensus 149 ~~l~l~G~~G~GKThL 164 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL 164 (450)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999954
No 280
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.24 E-value=0.06 Score=59.31 Aligned_cols=57 Identities=32% Similarity=0.445 Sum_probs=48.0
Q ss_pred CCEEEEeecCCcchhhhhhhhhc-cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcC
Q 005742 189 HDCLVLAATGSGKSLCFQIPALL-TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~-~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~ 245 (679)
.+++++||||||||..+++|.+. ..+.+||.=|--+|.......+++.|..+.++.-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeec
Confidence 47999999999999999999875 3558899999999999888888888876666543
No 281
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=1.6 Score=46.41 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=37.4
Q ss_pred cCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHHHHHcCC
Q 005742 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHM 354 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 354 (679)
.+.++|+||=+-+... -...+..+..+...... ..+...+|.|+||.......++...+..
T Consensus 298 ~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~-----~~~~e~~LVLsAt~~~~~~~~~~~~f~~ 358 (432)
T PRK12724 298 DGSELILIDTAGYSHR----NLEQLERMQSFYSCFGE-----KDSVENLLVLSSTSSYHHTLTVLKAYES 358 (432)
T ss_pred CCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcC-----CCCCeEEEEEeCCCCHHHHHHHHHHhcC
Confidence 5789999997665421 13455555554443211 0123457999999998777777766643
No 282
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.20 E-value=0.07 Score=51.14 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.5
Q ss_pred CEEEEeecCCcchhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp 208 (679)
++|+++|.|+|||..+.+.
T Consensus 52 h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHH
Confidence 6899999999999755443
No 283
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.15 E-value=0.19 Score=50.61 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHH----cCC-CEEEEeecCCcchhhhhhh
Q 005742 174 LKNFQKEALSAWL----AHH-DCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 174 ~~~~Q~~ai~~~l----~g~-d~iv~a~TGsGKTl~~~lp 208 (679)
+++.+.+++..+. .+. .+++.+|+|+|||......
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 5556666665542 233 5789999999999765533
No 284
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.11 E-value=0.79 Score=49.15 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++.+|+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999754
No 285
>PRK04195 replication factor C large subunit; Provisional
Probab=94.10 E-value=0.3 Score=53.78 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.+.+++.+|+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997553
No 286
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.07 E-value=0.28 Score=60.35 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhh--hhhhh-----ccCCeEEEEcCchHHHHHH
Q 005742 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCF--QIPAL-----LTGKVVVVISPLISLMHDQ 229 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~--~lp~l-----~~~~~vLvl~Pt~~L~~q~ 229 (679)
.|++-|++|+..++.+ +-++|.+..|+|||.+. ++-++ ..+..++.++||-.-+...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 6999999999999965 66899999999999763 22222 1356788999996555443
No 287
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.96 E-value=0.059 Score=56.41 Aligned_cols=40 Identities=28% Similarity=0.611 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCc
Q 005742 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGS 47 (679)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (679)
.++.|..|+||||+..++.+|+.+.==.-+=||||+++|=
T Consensus 156 ~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGI 195 (378)
T TIGR00601 156 RETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGI 195 (378)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCC
Confidence 3789999999999999999999999988889999999994
No 288
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.28 Score=56.51 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.0
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+++|.|+|||.++.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999998664433
No 289
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=1.1 Score=47.73 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.5
Q ss_pred CCEEEEeecCCcchhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+-.|+.+|.|+|||..+.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~ 54 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAAR 54 (394)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 347899999999996543
No 290
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.79 Score=52.40 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=66.4
Q ss_pred CCEEEEeecCCcchhhhhhhh-h---ccC-CeEEEEc-Cc-hHHHHHHHHHHH-hcCCceEEEcCCCCcHHHHHHHHcCC
Q 005742 189 HDCLVLAATGSGKSLCFQIPA-L---LTG-KVVVVIS-PL-ISLMHDQCSKLS-KHGVTACFLGSGQPDNKVEQKALRGM 260 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~-l---~~~-~~vLvl~-Pt-~~L~~q~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (679)
+-+.+++|||+|||.+....+ . ..+ +++.++. .+ +.=+.++...+. ..++..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv-------------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV-------------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc--------------------
Confidence 346789999999997665433 1 233 2443333 22 211223333333 233322
Q ss_pred ccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccC
Q 005742 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340 (679)
Q Consensus 261 ~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 340 (679)
.++.+|+.+...+. .+.+.++|+||=+=+... -......+..+.. ...+...+|.++||.
T Consensus 246 --~~~~~~~~l~~al~------~~~~~D~VLIDTAGRs~~----d~~l~eel~~l~~--------~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 --HAVKDAADLRFALA------ALGDKHLVLIDTVGMSQR----DRNVSEQIAMLCG--------VGRPVRRLLLLNAAS 305 (767)
T ss_pred --cccCCHHHHHHHHH------HhcCCCEEEEeCCCCCcc----CHHHHHHHHHHhc--------cCCCCeEEEEECCCC
Confidence 22335665443333 345678999998876642 1223333333221 223345588999998
Q ss_pred ChhhHHHHHHHcC
Q 005742 341 TIQVREDILKSLH 353 (679)
Q Consensus 341 ~~~~~~~i~~~l~ 353 (679)
......++.+.+.
T Consensus 306 ~~~~l~~i~~~f~ 318 (767)
T PRK14723 306 HGDTLNEVVHAYR 318 (767)
T ss_pred cHHHHHHHHHHHh
Confidence 7777777766553
No 291
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.82 E-value=0.19 Score=58.47 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc-----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005742 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
..|++-|++|+... ...++|.|..|||||.+.. +.-+. ....+|+|+.|+..+.++.+++.+..-.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~----- 75 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT----- 75 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc-----
Confidence 36899999998652 4689999999999996433 22121 3468999999999999999999885210
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHH-HHHHHHHHHhhcCceEEEeecccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIR-LIKPLQRLAESRGIALFAIDEVHC 297 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~~~~~~~~~~~~~lvViDEaH~ 297 (679)
....+.|+|...+.. ++........+ .-.+-|+|+.+.
T Consensus 76 --------------~~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 76 --------------SARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred --------------cccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 012567899888763 44422111111 123557787764
No 292
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.58 Score=52.73 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=14.3
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
..+.+++||||||+|..
T Consensus 117 ~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR 133 (647)
T ss_pred cCCCEEEEEechHhCCH
Confidence 35789999999999963
No 293
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.69 E-value=0.21 Score=56.67 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=73.9
Q ss_pred CchHHHhhhccCCCCC-CcEEEEeCchhHHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccc
Q 005742 497 NKPAERLSMLQEPLED-GLTIIYVPTRKETLSIAKYLCGF-G-VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (679)
Q Consensus 497 ~~~~~ll~~l~~~~~~-~~~IVF~~t~~~~~~l~~~L~~~-~-~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~ 573 (679)
.|.+..++++.+.+.. ..+||.++.+..+..+.+.|... + ..+..+|+++++.+|.+...+..+|+.+|+|.|..+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 5666677777666554 48999999999999999999875 3 579999999999999999999999999999999753
Q ss_pred cCcccccccEEEEeC
Q 005742 574 MGIDKLNVRRIIHYG 588 (679)
Q Consensus 574 ~GiDip~v~~VI~~d 588 (679)
.=.-+++..+||..+
T Consensus 251 vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 VFAPVEDLGLVAIWD 265 (665)
T ss_pred EEeccCCCCEEEEEc
Confidence 334566777777544
No 294
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.69 E-value=0.48 Score=47.45 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCCEEEEeecCCcchhhhh-hhh--hccCCeEEEEcCc---hHHHHHHHHHHHhcCC
Q 005742 188 HHDCLVLAATGSGKSLCFQ-IPA--LLTGKVVVVISPL---ISLMHDQCSKLSKHGV 238 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~--l~~~~~vLvl~Pt---~~L~~q~~~~l~~~~~ 238 (679)
|.-++|.+++|+|||...+ +.. +..+.++++++-- ..+.++..+....+++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 4568999999999996433 222 3467788888832 3333444444444443
No 295
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.67 E-value=0.09 Score=48.77 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=52.4
Q ss_pred EEEeecCCcchhhhhhhhh--c-c-CCeEEEEcCchHHHHHHHHHHHh----cCCceEEEcCCCCcHHHHHHHHcCCccE
Q 005742 192 LVLAATGSGKSLCFQIPAL--L-T-GKVVVVISPLISLMHDQCSKLSK----HGVTACFLGSGQPDNKVEQKALRGMYSI 263 (679)
Q Consensus 192 iv~a~TGsGKTl~~~lp~l--~-~-~~~vLvl~Pt~~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~I 263 (679)
++.|+-|-|||.+.-+.+. . . ..+++|.+|+.+=++..++.+.. .+++..... ..............|
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~i 76 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK----RIGQIIKLRFNKQRI 76 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC------------------------------CCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccccccc----ccccccccccccceE
Confidence 5789999999976554443 2 2 24799999998766665554432 222220000 000001111224678
Q ss_pred EEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 264 li~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
-+..|+.+.... ...+++|||||=.+- -+.+.++ .. ..+.+.||.|...
T Consensus 77 ~f~~Pd~l~~~~---------~~~DlliVDEAAaIp------~p~L~~l---l~------------~~~~vv~stTi~G 125 (177)
T PF05127_consen 77 EFVAPDELLAEK---------PQADLLIVDEAAAIP------LPLLKQL---LR------------RFPRVVFSTTIHG 125 (177)
T ss_dssp -B--HHHHCCT-------------SCEEECTGGGS-------HHHHHHH---HC------------CSSEEEEEEEBSS
T ss_pred EEECCHHHHhCc---------CCCCEEEEechhcCC------HHHHHHH---Hh------------hCCEEEEEeeccc
Confidence 888887554321 135999999999873 3444444 11 4568888888743
No 296
>CHL00181 cbbX CbbX; Provisional
Probab=93.64 E-value=1.1 Score=45.68 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.5
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
+.++++.+|+|+|||.++-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999998653
No 297
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.59 E-value=0.17 Score=57.81 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=66.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-cccCcccccccEEEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRIIH 586 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~~~GiDip~v~~VI~ 586 (679)
+.+++|-+||+.-+..+++.+.+ .|+.+..++|+++..+|..+++...+|+..|+|+|.. +...+++.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 56999999999999988877765 4789999999999999999999999999999999965 555678888998885
Q ss_pred eC
Q 005742 587 YG 588 (679)
Q Consensus 587 ~d 588 (679)
=.
T Consensus 364 DE 365 (630)
T TIGR00643 364 DE 365 (630)
T ss_pred ec
Confidence 44
No 298
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.58 E-value=0.37 Score=47.57 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCEEEEeecCCcchhhhh---hhhhccCCeEEEEcCchHHHHHHHHHHHhcCCce---------EEEcCCCCcHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA---------CFLGSGQPDNKVEQK 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~---lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~---------~~~~~~~~~~~~~~~ 255 (679)
|..+++.+++|+|||..++ .-.+..+.++++++- .+-..|..+.+..+++.. .++........ .
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~-~-- 96 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG-E-- 96 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc-c--
Confidence 5678999999999997443 223456888888884 455667777676665421 11111000000 0
Q ss_pred HHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 256 ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 256 ~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
.......++..|..+..++..+.......+.++||||=...+.
T Consensus 97 -~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~ 139 (237)
T TIGR03877 97 -AAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY 139 (237)
T ss_pred -ccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence 0001112222333333444444444445578899999887653
No 299
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.56 E-value=0.1 Score=58.28 Aligned_cols=57 Identities=30% Similarity=0.341 Sum_probs=49.6
Q ss_pred CCEEEEeecCCcchhhhhhhhhcc-CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcC
Q 005742 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~ 245 (679)
.+++++||||||||..+++|.+.. ++-+||+=|--++........++.|..+.++.-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 479999999999999999999764 678999999999999999888888887776654
No 300
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=0.54 Score=52.56 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=15.7
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
-.|+++|.|+|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35999999999998765443
No 301
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.40 E-value=0.75 Score=51.38 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.4
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
..+++++||||+|+|..
T Consensus 122 ~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN 138 (700)
T ss_pred cCCceEEEEEChHhcCH
Confidence 45789999999999964
No 302
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.38 E-value=0.23 Score=55.07 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=49.8
Q ss_pred HHHhCCCeeEEEEecccccCcccccccEE--------EEeCCCCCHHHHHHHhhccccCCCC-ceEEEEe
Q 005742 556 TEFHENKLEVVVATIAFGMGIDKLNVRRI--------IHYGWPQSLEAYYQEAGRAGRDGHL-ADCVLYA 616 (679)
Q Consensus 556 ~~F~~g~~~vLVaT~~~~~GiDip~v~~V--------I~~d~p~s~~~y~Qr~GRagR~G~~-g~~~~l~ 616 (679)
++|.+|+..|-|-..+++-||-+..=+.| |-..+|||...-+|..||++|..|. +.-++|+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 47999999999999999999998754444 5678999999999999999999874 4344443
No 303
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.36 E-value=0.26 Score=57.25 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc-----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcC
Q 005742 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~ 245 (679)
.|++-|++|+... ...++|.|..|||||.+.. +.-+. ....+|+|+-|+..+.++.+++.+..-
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~------- 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG------- 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc-------
Confidence 5999999998643 4589999999999996433 22221 346899999999999999999988421
Q ss_pred CCCcHHHHHHHHcCCccEEEEChHHHHH-HHHHHHHHHhhcCceEEEeecccc
Q 005742 246 GQPDNKVEQKALRGMYSIIYVCPETVIR-LIKPLQRLAESRGIALFAIDEVHC 297 (679)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~~~~~~~~~~~~~lvViDEaH~ 297 (679)
.. ...+.|+|...+.. ++........+ .-.+-|+|+.+.
T Consensus 80 ~~------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 80 TS------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDDQ 119 (721)
T ss_pred cC------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 00 12467899888763 44421111111 123557787664
No 304
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.36 E-value=1.6 Score=44.95 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHH----cCC---CEEEEeecCCcchhhhh
Q 005742 172 SSLKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l----~g~---d~iv~a~TGsGKTl~~~ 206 (679)
+.++|+|..++..+. .++ -.++.+|.|.||+..+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 467899999887765 233 47899999999996543
No 305
>PRK04328 hypothetical protein; Provisional
Probab=93.28 E-value=0.34 Score=48.24 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=57.9
Q ss_pred CCCEEEEeecCCcchhhhh-h--hhhccCCeEEEEcCchHHHHHHHHHHHhcCCc---------eEEEcCCCCcHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQ-I--PALLTGKVVVVISPLISLMHDQCSKLSKHGVT---------ACFLGSGQPDNKVEQK 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-l--p~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~---------~~~~~~~~~~~~~~~~ 255 (679)
|.-+++.+++|+|||...+ + -.+..+.++++++ +.+-..+..+.+..+++. ...+........ .
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~-~-- 98 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIG-S-- 98 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEeccccccc-c--
Confidence 5678899999999986432 2 2245677888887 434455666666666542 111111000000 0
Q ss_pred HHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 256 ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 256 ~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
.......++.+|..+..++..+.......+.+.+|||=.--+
T Consensus 99 -~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l 140 (249)
T PRK04328 99 -AAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTL 140 (249)
T ss_pred -ccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHh
Confidence 001122344455555455554444545557899999977655
No 306
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.24 E-value=0.33 Score=50.03 Aligned_cols=53 Identities=30% Similarity=0.356 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEeecCCcchhhhh--hhh---hccCCeEEEEcCchHH
Q 005742 173 SLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQ--IPA---LLTGKVVVVISPLISL 225 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l-~g~d~iv~a~TGsGKTl~~~--lp~---l~~~~~vLvl~Pt~~L 225 (679)
.+++.|.+.+..+. .+++++++++||||||.... +.. ..+..++++|-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 36788888887655 46799999999999995432 111 1245678888887776
No 307
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.9 Score=45.04 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=64.9
Q ss_pred HHHHcCC-----CEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 183 SAWLAHH-----DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 183 ~~~l~g~-----d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.+..|+ -+++.+|.|+||+..+-..+-..+ .+.|-+.+..|+..|.-+-.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESE----------------------- 211 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESE----------------------- 211 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHH-----------------------
Confidence 4556564 489999999999965433332223 56666666666665543222
Q ss_pred cCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCC-chHHHHHHHHHHHhhccccccccC-CCCCEEE
Q 005742 258 RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD-FRPDYRRLSVLRENFGANNLKSLK-FDIPLMA 335 (679)
Q Consensus 258 ~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~-f~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~ 335 (679)
+|. ..+.....-+.-..|.|||+|.+-..+.. =.+..++|.. .|--. .+-.. .+--+|.
T Consensus 212 ------------kLV---knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKT---EfLVQ-MqGVG~d~~gvLV 272 (439)
T KOG0739|consen 212 ------------KLV---KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKT---EFLVQ-MQGVGNDNDGVLV 272 (439)
T ss_pred ------------HHH---HHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHH---HHHHh-hhccccCCCceEE
Confidence 221 11112223456789999999988542221 2334444422 11000 11111 2345889
Q ss_pred EEccCChhhHH
Q 005742 336 LTATATIQVRE 346 (679)
Q Consensus 336 lSAT~~~~~~~ 346 (679)
|.||-.+.++.
T Consensus 273 LgATNiPw~LD 283 (439)
T KOG0739|consen 273 LGATNIPWVLD 283 (439)
T ss_pred EecCCCchhHH
Confidence 99997765543
No 308
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.19 E-value=0.36 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.6
Q ss_pred HcCCCEEEEeecCCcchhhhh
Q 005742 186 LAHHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~~ 206 (679)
-.|+.+++++|+|+|||....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCCEEEEECCCCCChhHHHH
Confidence 358899999999999997543
No 309
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.19 E-value=0.48 Score=43.81 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=51.3
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHH-HHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEE
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLM-HDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV 266 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~-~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 266 (679)
+.+..++|-|||.+++-.++ ..+.+|+|+-=.+.-. .--...+.++++.......+..... .... -
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~-------~~~~---~ 77 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWET-------QNRE---A 77 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecC-------CCcH---H
Confidence 56777899999987764443 4688888773332210 0111222333333222222111000 0000 0
Q ss_pred ChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 267 Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
......+.++.....+....+++||+||+=...++|
T Consensus 78 ~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~g 113 (173)
T TIGR00708 78 DTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYG 113 (173)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCC
Confidence 011122233333445556789999999999988877
No 310
>PRK09183 transposase/IS protein; Provisional
Probab=93.16 E-value=0.64 Score=46.53 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=24.1
Q ss_pred HHcCCCEEEEeecCCcchhhhhhhh---hccCCeEEEEc
Q 005742 185 WLAHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVIS 220 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~ 220 (679)
+.++.++++.+|+|+|||..+.... ...+..++++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567899999999999996443222 23455665553
No 311
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.15 E-value=0.15 Score=51.90 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEeecCCcchhh-hhhhhh-ccCCeEEEEcCchHHH
Q 005742 169 FGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLC-FQIPAL-LTGKVVVVISPLISLM 226 (679)
Q Consensus 169 ~g~~~~~~~Q~~ai~~~l~g~-d~iv~a~TGsGKTl~-~~lp~l-~~~~~vLvl~Pt~~L~ 226 (679)
..|..+++-|...+..+...+ |+++++.||||||.. ..+..+ -...++|.+--|.+|-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 356789999999998888766 999999999999953 222222 3455999999988773
No 312
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.09 E-value=0.55 Score=45.93 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcC
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISP 221 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~P 221 (679)
|.-+++.+++|+|||...+-.+ +..+.+++++.-
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4567999999999996443222 234566666643
No 313
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.81 Score=47.19 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEeecCCcchhhhh
Q 005742 174 LKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 174 ~~~~Q~~ai~~~l----~g~---d~iv~a~TGsGKTl~~~ 206 (679)
++|+|...+..+. +|+ -.++.+|.|.||+..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~ 42 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR 42 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH
Confidence 3566666665544 343 46789999999996543
No 314
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.07 E-value=0.59 Score=45.09 Aligned_cols=35 Identities=31% Similarity=0.286 Sum_probs=24.1
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCc
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPL 222 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt 222 (679)
|.-+.+.+|+|+|||...+-.+. ..+.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45678999999999965443332 346677777664
No 315
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.06 E-value=0.44 Score=49.51 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEeecCCcchhhhh
Q 005742 174 LKNFQKEALSAWLA--H---HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~--g---~d~iv~a~TGsGKTl~~~ 206 (679)
++|+|...+..+.. + +-.++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 35777777776653 3 246899999999996554
No 316
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.06 E-value=0.84 Score=49.80 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=16.4
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
..|+++|.|+|||.++.+.+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 37 SILLVGASGVGKTTCARIIS 56 (491)
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 58999999999998765544
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.05 E-value=0.93 Score=49.24 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|.-+++.+++|+|||...+-.+. ..+.+++++.-. +-..|......++++..- .+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~~~~--------------------~l~ 138 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGLPSD--------------------NLY 138 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCCChh--------------------cEE
Confidence 45678999999999964332221 246788888754 445666666666654210 122
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+.....+..++.. +...+.++||||+.+.+.
T Consensus 139 ~~~e~~l~~i~~~----i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 139 LLAETNLEAILAT----IEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred EeCCCCHHHHHHH----HHhhCCCEEEEechhhhc
Confidence 3322223333332 223468999999999875
No 318
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.05 E-value=0.58 Score=52.10 Aligned_cols=17 Identities=12% Similarity=0.477 Sum_probs=14.0
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
+.++++||||++|.+..
T Consensus 375 y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 375 YREMDILLVDDIQFLED 391 (617)
T ss_pred hhcCCEEEEehhccccC
Confidence 34689999999998854
No 319
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.04 E-value=2.6 Score=45.09 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=29.6
Q ss_pred CEEEEeecCCcchhhhh-hhhh--ccCCeEEEEc--CchHHHHHHHHHHHh-cCCce
Q 005742 190 DCLVLAATGSGKSLCFQ-IPAL--LTGKVVVVIS--PLISLMHDQCSKLSK-HGVTA 240 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~-lp~l--~~~~~vLvl~--Pt~~L~~q~~~~l~~-~~~~~ 240 (679)
-+++++++|+|||.+.. +... ..+.++++++ |.|.-+.+|.+.+.+ .++..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~ 158 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF 158 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE
Confidence 36789999999996554 3222 2355555554 235555666555544 34443
No 320
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.01 E-value=0.13 Score=56.51 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHHH-----cC----CCEEEEeecCCcchhhhhhhhh-------ccCCeEEEEcCchHHHHHHHHHHHhc
Q 005742 176 NFQKEALSAWL-----AH----HDCLVLAATGSGKSLCFQIPAL-------LTGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 176 ~~Q~~ai~~~l-----~g----~d~iv~a~TGsGKTl~~~lp~l-------~~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
|+|+-.+-.++ .| +.+++..|-|.|||......++ ..+..++++++++.-+...+..+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 56776666665 12 3588999999999964433222 14678999999999999888887774
No 321
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.98 E-value=0.099 Score=57.19 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=80.9
Q ss_pred HHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCC-------cEEEecCCCCHHHHHHHHHHHh----CCCeeEEEE
Q 005742 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV-------KAAAYNASLPKSQLRRVHTEFH----ENKLEVVVA 568 (679)
Q Consensus 500 ~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~R~~v~~~F~----~g~~~vLVa 568 (679)
...+..|....+ +-+++|.++-+-...+.+...+.|+ +...+-..-+ -+.+++.|. .|.-.+|+|
T Consensus 618 ~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLla 693 (821)
T KOG1133|consen 618 GSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLA 693 (821)
T ss_pred HHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEE
Confidence 334445555565 6799999999988888888876544 2223332222 356676665 556567777
Q ss_pred e--cccccCccccc--ccEEEEeCCCCC--------------------------------HHHHHHHhhccccCCCCceE
Q 005742 569 T--IAFGMGIDKLN--VRRIIHYGWPQS--------------------------------LEAYYQEAGRAGRDGHLADC 612 (679)
Q Consensus 569 T--~~~~~GiDip~--v~~VI~~d~p~s--------------------------------~~~y~Qr~GRagR~G~~g~~ 612 (679)
. --+++|||+.+ ++.||..++|.. +...-|.+|||=|.-+.-.+
T Consensus 694 VVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~ 773 (821)
T KOG1133|consen 694 VVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYAS 773 (821)
T ss_pred EeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhcccee
Confidence 6 56899999975 789999998742 12345999999999888888
Q ss_pred EEEecCC
Q 005742 613 VLYANLS 619 (679)
Q Consensus 613 ~~l~~~~ 619 (679)
+++++..
T Consensus 774 i~LlD~R 780 (821)
T KOG1133|consen 774 IYLLDKR 780 (821)
T ss_pred EEEehhh
Confidence 8888643
No 322
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.96 E-value=2.2 Score=41.95 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=54.8
Q ss_pred CCCEEEEeecCCcchhhhhhh---hhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp---~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|.-+++.+++|+|||....-. .+..+.+++++.=-.. ..+..+.+..+++...-.. ..+...++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~g~~~~~~~------------~~g~l~i~ 91 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESVKIDISDFF------------LWGYLRIF 91 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHCCCChhHHH------------hCCCceEE
Confidence 456889999999999644322 2346778888776433 4566777777764421100 00111111
Q ss_pred E-------EChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 265 Y-------VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i-------~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
- .++..+..++..+.....-.+.+++||||.--+.
T Consensus 92 ~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 92 PLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred eccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 1 1122222333333344444578999999999664
No 323
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.94 E-value=1 Score=45.82 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.4
Q ss_pred CCCEEEEeecCCcchhhh
Q 005742 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
+.++++.+|+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 347999999999999766
No 324
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.93 E-value=0.22 Score=57.08 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCC-----CcEEE-ecCCCCHHHHHHHHHHHhCCCeeEEEEeccc-ccCccc-c--cc
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFG-----VKAAA-YNASLPKSQLRRVHTEFHENKLEVVVATIAF-GMGIDK-L--NV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~-----~~~~~-~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~-~~GiDi-p--~v 581 (679)
+.++++.+||+.-+.+.++.|.+.. ..+.. ||+.|+.++++..+++|.+|.++|||+|+.+ ..-.|. . ..
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kF 204 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKF 204 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCC
Confidence 5699999999999999998887632 33333 9999999999999999999999999999763 333332 1 34
Q ss_pred cEEEEeC
Q 005742 582 RRIIHYG 588 (679)
Q Consensus 582 ~~VI~~d 588 (679)
|+|+.-|
T Consensus 205 dfifVDD 211 (1187)
T COG1110 205 DFIFVDD 211 (1187)
T ss_pred CEEEEcc
Confidence 5555444
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=1.3 Score=46.90 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.1
Q ss_pred EEEEeecCCcchhhhhh
Q 005742 191 CLVLAATGSGKSLCFQI 207 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~l 207 (679)
.++.+|.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 58999999999976543
No 326
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.87 E-value=0.52 Score=48.40 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|+-+.+.+|+|+|||..++-.+ ...+++++++..-..+-.+ .+.++|+.. .+++
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~--------------------~~l~ 111 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI--------------------DNLL 111 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH--------------------HHeE
Confidence 4568899999999997544222 2457788888665444333 344444321 1455
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..|......+...........+++||||=+-.+.
T Consensus 112 v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 112 VSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred EecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 55555544444433344445679999999988764
No 327
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.85 E-value=0.93 Score=47.84 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|.-+++.+++|+|||...+-.+. ..+.+++++.-.. -..|......++++.. .++.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~~--------------------~~l~ 140 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGIST--------------------ENLY 140 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCCCc--------------------ccEE
Confidence 45678999999999974432221 3457888887543 3456655555554321 0122
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+.....+..++. .+...+.++||||+++.+.
T Consensus 141 l~~e~~le~I~~----~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 141 LLAETNLEDILA----SIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred EEccCcHHHHHH----HHHhcCCcEEEEcchHHhh
Confidence 222222222222 2233478999999999874
No 328
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.85 E-value=0.32 Score=62.12 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhh---hhh---h-ccCCeEEEEcCchHHHHH
Q 005742 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQ---IPA---L-LTGKVVVVISPLISLMHD 228 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~---lp~---l-~~~~~vLvl~Pt~~L~~q 228 (679)
.+++.|++|+..++.+ +-++|.+..|+|||.... -++ + ..+..++.++||-.-+.+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH
Confidence 6999999999999876 456788999999997551 112 2 246789999999554443
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.84 E-value=0.53 Score=48.18 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhhh--hhhhc---cCCeEEEEcCchHHH
Q 005742 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQ--IPALL---TGKVVVVISPLISLM 226 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~~--lp~l~---~~~~vLvl~Pt~~L~ 226 (679)
.+.+.|.+.+..+++ +++++++++||||||...- +-.+. ...+++++-.+.+|.
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 466777777776654 5699999999999996432 22221 257888888887773
No 330
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.83 E-value=1.1 Score=44.44 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=53.2
Q ss_pred cCCCEEEEeecCCcchhhhhhhh---hcc-CCeEEEEcC---chHHHHHHHHHHHhcCCceEEEcCCCCcHHHH------
Q 005742 187 AHHDCLVLAATGSGKSLCFQIPA---LLT-GKVVVVISP---LISLMHDQCSKLSKHGVTACFLGSGQPDNKVE------ 253 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~---l~~-~~~vLvl~P---t~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~------ 253 (679)
.|.-+++.|++|+|||...+-.+ ... +..+++++. ..+++....... .++....+..+.......
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 35668899999999996433222 233 888899884 233343332222 222211122221111111
Q ss_pred HHHHcCCccEEE-----EChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 254 QKALRGMYSIIY-----VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 254 ~~~~~~~~~Ili-----~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
...+.. ..+.| .|++.+...+. ......++++||||=.+.+.
T Consensus 90 ~~~~~~-~~~~i~~~~~~~~~~l~~~i~---~~~~~~~~~~vvID~l~~l~ 136 (242)
T cd00984 90 IGELKE-LPIYIDDSSSLTVSDIRSRAR---RLKKEHGLGLIVIDYLQLMS 136 (242)
T ss_pred HHHHhc-CCEEEeCCCCCCHHHHHHHHH---HHHHhcCCCEEEEcCchhcC
Confidence 111112 23333 23444443333 33333489999999988774
No 331
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.83 E-value=1.1 Score=46.78 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHHHc-CC--CEEEEeecCCcchhhhhh
Q 005742 178 QKEALSAWLA-HH--DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 178 Q~~ai~~~l~-g~--d~iv~a~TGsGKTl~~~l 207 (679)
..+.+..++. ++ .+++.+|+|+|||..+..
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 3344444333 44 689999999999976543
No 332
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.79 E-value=0.26 Score=58.13 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-ccccCcccccccEEEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-AFGMGIDKLNVRRIIH 586 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-~~~~GiDip~v~~VI~ 586 (679)
..+++|.+||+.-+...++.+.+ .++++..++|..+.+++..+++.+++|+.+|+|+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 46899999999999999888776 367888999999999999999999999999999996 4556788889998884
Q ss_pred eC
Q 005742 587 YG 588 (679)
Q Consensus 587 ~d 588 (679)
-.
T Consensus 580 DE 581 (926)
T TIGR00580 580 DE 581 (926)
T ss_pred ec
Confidence 33
No 333
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.70 E-value=0.18 Score=57.24 Aligned_cols=57 Identities=25% Similarity=0.269 Sum_probs=48.0
Q ss_pred CCEEEEeecCCcchhhhhhhhhcc-CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcC
Q 005742 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~ 245 (679)
.+++++||||||||..+++|.++. .+.+||+=|--++........++.|..+..+.-
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 589999999999999999998764 678999999999988888777778877665543
No 334
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.70 E-value=1.2 Score=49.62 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.3
Q ss_pred CEEEEeecCCcchhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp 208 (679)
-.|+.||.|+|||..+...
T Consensus 40 A~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999766543
No 335
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=1.1 Score=49.41 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.2
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+.+|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILA 59 (509)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999997665443
No 336
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.58 E-value=1.4 Score=40.58 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=19.6
Q ss_pred cCceEEEeecccccccCCCCchHHHHHHHHHHHhh
Q 005742 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~ 319 (679)
...+.+||||||.|. ......|...++..
T Consensus 101 ~~~KviiI~~ad~l~------~~a~NaLLK~LEep 129 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT------EEAQNALLKTLEEP 129 (162)
T ss_dssp SSSEEEEEETGGGS-------HHHHHHHHHHHHST
T ss_pred CCceEEEeehHhhhh------HHHHHHHHHHhcCC
Confidence 468899999999996 44455555555443
No 337
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.57 E-value=2 Score=40.61 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.2
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
.....+|||||+|++..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 45788999999999963
No 338
>PRK09354 recA recombinase A; Provisional
Probab=92.57 E-value=0.63 Score=48.24 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|+-+.+.+|+|+|||...+-.+ ...++.++||..--++-.+ .+..+|+.. -+++
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdl--------------------d~ll 116 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDI--------------------DNLL 116 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCH--------------------HHeE
Confidence 4567899999999997554322 3467888888876665542 344444331 1355
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..|......+........-..+++||||=+-.+.
T Consensus 117 i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 117 VSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 55554444444433344445679999999877653
No 339
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.49 E-value=0.53 Score=48.35 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|+-+.+.+|.|+|||..++-.+ ...++.++|+.+--.+-.+ .+.++++.. -+++
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~--------------------~~l~ 111 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL--------------------DNLL 111 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH--------------------HHhe
Confidence 4568899999999996554333 2357888888876655443 334444320 1344
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..|......+...........+++||||=+-.+.
T Consensus 112 v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 112 ISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 55554433333333334445679999999877653
No 340
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.46 E-value=1 Score=52.57 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.6
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+.+|.|+|||.++.+.+
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILA 58 (824)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998765543
No 341
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.37 E-value=0.5 Score=47.97 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=14.9
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
++.+++++|||+|||.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467889999999996544
No 342
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.34 E-value=7.4 Score=36.06 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEc
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVIS 220 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~ 220 (679)
+++.+++|+|||......+. ..+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 57889999999976543322 2455555544
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=1.3 Score=48.49 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.9
Q ss_pred EEEEeecCCcchhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp 208 (679)
.|+++|+|+|||.++.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999766543
No 344
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.27 E-value=0.18 Score=57.17 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=74.5
Q ss_pred cCchHHHhhhccCCCCCC-cEEEEeCchhHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccc
Q 005742 496 LNKPAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (679)
Q Consensus 496 ~~~~~~ll~~l~~~~~~~-~~IVF~~t~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~ 573 (679)
+.|.+..++.+.+.+..+ .+||-++-+..+..+.+.|..+ |.++..+|+++++.+|.+...+.++|+.+|+|.|..+
T Consensus 228 SGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA- 306 (730)
T COG1198 228 SGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA- 306 (730)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-
Confidence 457777888888877666 8999999999999999988764 8899999999999999999999999999999999642
Q ss_pred cCcccccccEEE
Q 005742 574 MGIDKLNVRRII 585 (679)
Q Consensus 574 ~GiDip~v~~VI 585 (679)
.=.-+++.-+||
T Consensus 307 lF~Pf~~LGLII 318 (730)
T COG1198 307 LFLPFKNLGLII 318 (730)
T ss_pred hcCchhhccEEE
Confidence 334456666666
No 345
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.24 E-value=1.1 Score=49.30 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.3
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
..|+++|.|+|||.++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765444
No 346
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.9 Score=48.61 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=31.6
Q ss_pred hcCceEEEeecccccccCC---CCchHHHHH-HHHHHHhhccccccccCCCCCEEEEEccCC
Q 005742 284 SRGIALFAIDEVHCVSKWG---HDFRPDYRR-LSVLRENFGANNLKSLKFDIPLMALTATAT 341 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~~g---~~f~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 341 (679)
.+.+.+||+|+..++.+|. +-|...+.+ |..+ ++..||.-+.|+.-+|-+
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~Vl--------lK~~ppkg~kLli~~TTS 649 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVL--------LKKQPPKGRKLLIFGTTS 649 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHH--------hccCCCCCceEEEEeccc
Confidence 3568999999999999864 344433322 2222 455666666666666653
No 347
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.23 E-value=0.23 Score=56.17 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=48.5
Q ss_pred CCEEEEeecCCcchhhhhhhhhcc-CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCC
Q 005742 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 246 (679)
.++++.||||+|||..+++|.+.. ++.++|+=|..++........++.|.++.++.-.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~ 283 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPT 283 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 589999999999999999999865 6788888899999888777777788777766543
No 348
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.22 E-value=0.72 Score=48.30 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.6
Q ss_pred HcCCCEEEEeecCCcchhh
Q 005742 186 LAHHDCLVLAATGSGKSLC 204 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~ 204 (679)
-+|+..++.+|.|+|||..
T Consensus 167 GkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccCceEEEeCCCCCChhHH
Confidence 3688999999999999963
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.19 E-value=0.77 Score=44.64 Aligned_cols=33 Identities=27% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEc
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVIS 220 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~ 220 (679)
|.-+++.+++|+|||...+-.+. ..+.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34578999999999965443232 3567777773
No 350
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.18 E-value=0.44 Score=59.50 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhh--hhhhc-----cCCeEEEEcCchHHHHH
Q 005742 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHD 228 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~--lp~l~-----~~~~vLvl~Pt~~L~~q 228 (679)
.|++.|++|+..++.+ +-++|.+..|+|||.+.- +-++. .+..++.++||---+..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 6899999999999975 468899999999997532 22221 25678889999655543
No 351
>PHA00729 NTP-binding motif containing protein
Probab=92.18 E-value=0.84 Score=44.18 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=21.7
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEV 295 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEa 295 (679)
....++.+.+.+...+... .....+.+++||||+
T Consensus 58 ~~~~~fid~~~Ll~~L~~a--~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 58 VQNSYFFELPDALEKIQDA--IDNDYRIPLIIFDDA 91 (226)
T ss_pred CCcEEEEEHHHHHHHHHHH--HhcCCCCCEEEEeCC
Confidence 3467777877777666532 112234689999994
No 352
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.16 E-value=0.34 Score=55.41 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh--h-----ccCCeEEEEcCchHH
Q 005742 156 DWEVKVNSLLKKHFG---HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA--L-----LTGKVVVVISPLISL 225 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g---~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~--l-----~~~~~vLvl~Pt~~L 225 (679)
.|.+.........|. -..|++-|++|+..- ..+++|.|..|||||.+.+--+ + ..+..+|+|+.|+..
T Consensus 176 ~~~~~~l~~~~~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~A 253 (684)
T PRK11054 176 AWTEAMLEEYADFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQA 253 (684)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHH
Confidence 344444444443432 247999999998542 3578999999999997554322 1 135699999999999
Q ss_pred HHHHHHHHHhc
Q 005742 226 MHDQCSKLSKH 236 (679)
Q Consensus 226 ~~q~~~~l~~~ 236 (679)
+..+.+++...
T Consensus 254 A~em~eRL~~~ 264 (684)
T PRK11054 254 AEEMDERIRER 264 (684)
T ss_pred HHHHHHHHHHh
Confidence 99999888763
No 353
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.11 E-value=2.5 Score=38.56 Aligned_cols=100 Identities=18% Similarity=0.056 Sum_probs=50.2
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEE
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV 266 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 266 (679)
+.|..++|.|||.+++--++ ..+.+|+|+-=.+.- -.--...+++++ .+.....+....... . +
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~-----~--~---- 72 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTT-----E--N---- 72 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCC-----C--C----
Confidence 45677889999987764443 468888885433321 011122344442 111221111110000 0 0
Q ss_pred ChH---HHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 267 CPE---TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 267 Tp~---~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
.++ .....++.....+....+++||+||+=.....|
T Consensus 73 ~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~g 111 (159)
T cd00561 73 DEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYG 111 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCC
Confidence 001 111222323444556789999999999987766
No 354
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.11 E-value=1.5 Score=49.25 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.2
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+++|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999998765443
No 355
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.09 E-value=1.2 Score=51.76 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=24.8
Q ss_pred CCCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005742 4 SGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
+-+...|+.--|++.+ +..++++.+|-+.+.+.+.+.
T Consensus 22 ~~V~~EHLLlaLL~~~----~~~~iL~~~gid~~~l~~~l~ 58 (731)
T TIGR02639 22 EFVTLEHILLALLFDS----DAIEILEECGGDVEALRKDLE 58 (731)
T ss_pred CcCcHHHHHHHHHcCc----hHHHHHHHcCCCHHHHHHHHH
Confidence 4577788888887764 245778888877665544443
No 356
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.08 E-value=0.21 Score=57.36 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhh--hhhc-----cCCeEEEEcCchHHHHHHHHHHHhc
Q 005742 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI--PALL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~l--p~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
.|++-|++|+... ...++|.|..|||||.+... .-+. ...++|+|+.|+..+.++.+++.+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 4889999998653 46789999999999965432 1121 2458999999999999999888764
No 357
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.93 E-value=0.58 Score=48.62 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=51.6
Q ss_pred CCCEEEEeecCCcchhhh-hhhhh--c------cCCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCF-QIPAL--L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~-~lp~l--~------~~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+.++++.|+|||... ++.+- . .+++++||.---.+ ..+..+....+++..- ..+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~-------------~~l 192 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAD-------------AVL 192 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChh-------------hhc
Confidence 456789999999999533 23221 1 13688888875433 2233333334443210 011
Q ss_pred cCCccEEEE---ChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 258 RGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 258 ~~~~~Ili~---Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
-+|.+. +++.+..++..+...+.-.++++||||=+-.+
T Consensus 193 ---~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 193 ---DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred ---CeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 123333 34544445554444444567999999987655
No 358
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.93 E-value=0.95 Score=58.05 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEeecCCcchhhhh--hhhh-ccCCeEEEEcCchHHHHHHHH
Q 005742 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQ--IPAL-LTGKVVVVISPLISLMHDQCS 231 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g--~d~iv~a~TGsGKTl~~~--lp~l-~~~~~vLvl~Pt~~L~~q~~~ 231 (679)
.+++-|++|+..++.. +-.+|.++.|+|||.+.. +-++ ..|..+++++||-.-+....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 6899999999999875 457899999999996532 2222 358899999999765544433
No 359
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.91 E-value=1.1 Score=42.10 Aligned_cols=107 Identities=19% Similarity=0.082 Sum_probs=56.8
Q ss_pred cCCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHH-HHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCcc
Q 005742 187 AHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLM-HDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~-~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (679)
....+++..++|.|||.+++--+ +..|.+|+|+-=.+--. .--...+.+.+ .+.....+...... .....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~-----~~~~~ 94 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWE-----TQDRE 94 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCccc-----CCCcH
Confidence 45689999999999998776443 34788888886554321 11223333322 11111111110000 00000
Q ss_pred EEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 263 Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
- ........++.....+....+++||+||+=...++|
T Consensus 95 e---~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g 131 (191)
T PRK05986 95 R---DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYG 131 (191)
T ss_pred H---HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC
Confidence 0 001111233333445556789999999999998877
No 360
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.89 E-value=1 Score=47.62 Aligned_cols=68 Identities=16% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEECh
Q 005742 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp 268 (679)
.-+++.+++|+||| .|++-+...+.+.+.. +.|++.|.
T Consensus 114 nplfi~G~~GlGKT---------------------HLl~Aign~~~~~~~~---------------------a~v~y~~s 151 (408)
T COG0593 114 NPLFIYGGVGLGKT---------------------HLLQAIGNEALANGPN---------------------ARVVYLTS 151 (408)
T ss_pred CcEEEECCCCCCHH---------------------HHHHHHHHHHHhhCCC---------------------ceEEeccH
Confidence 46899999999999 5666666666665433 34555555
Q ss_pred HHHHH-HHH--------HHHHHHhhcCceEEEeecccccccC
Q 005742 269 ETVIR-LIK--------PLQRLAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 269 ~~l~~-ll~--------~~~~~~~~~~~~lvViDEaH~l~~~ 301 (679)
+.+.. ++. .++.. . .+++++||.++.+.+.
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~--y-~~dlllIDDiq~l~gk 190 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEK--Y-SLDLLLIDDIQFLAGK 190 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh--h-ccCeeeechHhHhcCC
Confidence 54431 111 11222 2 7999999999999753
No 361
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.53 Score=52.23 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=56.0
Q ss_pred EEEEeCchhHHHHHHHHHHh----C-CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccccC-cccccccE
Q 005742 515 TIIYVPTRKETLSIAKYLCG----F-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-IDKLNVRR 583 (679)
Q Consensus 515 ~IVF~~t~~~~~~l~~~L~~----~-~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~G-iDip~v~~ 583 (679)
+||.++||+.+..+++.+.. . ++.+..+.|+++...+... ++.| .+|||||+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998775 3 5778999999998776644 4446 99999995 56777 88889998
Q ss_pred EEE
Q 005742 584 IIH 586 (679)
Q Consensus 584 VI~ 586 (679)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 362
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.85 E-value=1.8 Score=43.29 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCEEEEeecCCcchhhhhhhhh---cc-CCeEEEEcCc---hHHHHHHHHHHHhcCCceEEEcCCCCcHHHHH------H
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL---LT-GKVVVVISPL---ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ------K 255 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l---~~-~~~vLvl~Pt---~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~------~ 255 (679)
.=+++.|.||.|||..++-.+. .. +..|++++.- ..++......+. ++....+..+........ .
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccCHHHHHHHHHHHH
Confidence 4478889999999975543322 33 5789998864 233333332222 232222222322222111 1
Q ss_pred HHcCCccEEEEChH----HHHHHHHHHHHHHhh-cCceEEEeecccccccC--CCCchHHHHH----HHHHHHhhccccc
Q 005742 256 ALRGMYSIIYVCPE----TVIRLIKPLQRLAES-RGIALFAIDEVHCVSKW--GHDFRPDYRR----LSVLRENFGANNL 324 (679)
Q Consensus 256 ~~~~~~~Ili~Tp~----~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~~--g~~f~~~~~~----l~~~~~~~~~~~~ 324 (679)
.+....-++..+|. .+...+. ..... .++++||||=.|.+... +..-+..+.. |..+...+
T Consensus 98 ~l~~~~l~i~~~~~~~~~~i~~~i~---~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~----- 169 (259)
T PF03796_consen 98 KLSDLPLYIEDTPSLTIDDIESKIR---RLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL----- 169 (259)
T ss_dssp HHHTSEEEEEESSS-BHHHHHHHHH---HHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhhCcEEEECCCCCCHHHHHHHHH---HHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-----
Confidence 22333333344433 3333333 22222 78999999999998652 1112233333 33333332
Q ss_pred cccCCCCCEEEEEccC
Q 005742 325 KSLKFDIPLMALTATA 340 (679)
Q Consensus 325 ~~~~~~~~~l~lSAT~ 340 (679)
+++++++|-.-
T Consensus 170 -----~i~vi~~sQln 180 (259)
T PF03796_consen 170 -----NIPVIALSQLN 180 (259)
T ss_dssp -----TSEEEEEEEBS
T ss_pred -----CCeEEEccccC
Confidence 67788777654
No 363
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.83 E-value=0.2 Score=46.92 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=24.6
Q ss_pred HcCCCEEEEeecCCcchhhhhhh---hhccCCeEEEEcCchHHHHH
Q 005742 186 LAHHDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHD 228 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~~~lp---~l~~~~~vLvl~Pt~~L~~q 228 (679)
-+++++++.+++|+|||..+... ++..+..++++ +..+|+.+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceecc
Confidence 35689999999999999654322 22355555554 44555554
No 364
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.83 E-value=2.3 Score=43.96 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.5
Q ss_pred cCceEEEeecccccc
Q 005742 285 RGIALFAIDEVHCVS 299 (679)
Q Consensus 285 ~~~~lvViDEaH~l~ 299 (679)
...++|||||+|.+.
T Consensus 99 ~~~~vliiDe~d~l~ 113 (316)
T PHA02544 99 GGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEEECccccc
Confidence 357899999999883
No 365
>PRK06904 replicative DNA helicase; Validated
Probab=91.81 E-value=3.3 Score=45.34 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCEEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCC-CCcHHHHHH-----
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSG-QPDNKVEQK----- 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~-~~~~~~~~~----- 255 (679)
|.=+++.|.||.|||..++-.+ ...+..|+|++.- .=..|+..++-.. ++....+..+ ......+.+
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~ 299 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTV 299 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHH
Confidence 3446778899999997543222 2246778777653 2255555554432 3332222223 222222211
Q ss_pred -HHcCCccEEEE-----ChHHHHHHHHHHHHHHhh-cCceEEEeecccccccCCC--CchHHHHHHHHHHHhhccccccc
Q 005742 256 -ALRGMYSIIYV-----CPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGH--DFRPDYRRLSVLRENFGANNLKS 326 (679)
Q Consensus 256 -~~~~~~~Ili~-----Tp~~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~~g~--~f~~~~~~l~~~~~~~~~~~~~~ 326 (679)
.+...+.+.|- |+..+...+. ..... ..+++||||=.+.+...+. .-...+..+.+-++.+..+
T Consensus 300 ~~l~~~~~l~I~d~~~~t~~~i~~~~r---~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke---- 372 (472)
T PRK06904 300 GMFKQKPNLYIDDSSGLTPTELRSRAR---RVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKE---- 372 (472)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHH---HHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH----
Confidence 12223345552 4444433222 22222 3689999999988853321 1112333333333322211
Q ss_pred cCCCCCEEEEE
Q 005742 327 LKFDIPLMALT 337 (679)
Q Consensus 327 ~~~~~~~l~lS 337 (679)
-+++++++|
T Consensus 373 --l~ipVi~ls 381 (472)
T PRK06904 373 --LKVPVVALS 381 (472)
T ss_pred --hCCeEEEEE
Confidence 168888888
No 366
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.74 E-value=1.2 Score=43.73 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=33.9
Q ss_pred cCCCEEEEeecCCcchhhh-hhh--hhccCCeEEEEcCchHHHHHHHHHHHhcCC
Q 005742 187 AHHDCLVLAATGSGKSLCF-QIP--ALLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~-~lp--~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~ 238 (679)
.|.-+++.+++|+|||..+ .+. .+.++.++++++.. +-..+..+.+..++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHhCC
Confidence 3677899999999999763 222 23467788888854 334555555655543
No 367
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.72 E-value=0.49 Score=54.38 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.3
Q ss_pred CEEEEeecCCcchhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
++++.+|+|+|||..+..
T Consensus 54 slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 54 SLILYGPPGVGKTTLARI 71 (725)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 789999999999976543
No 368
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.69 E-value=3.1 Score=47.10 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=15.9
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
.+|+++|.|+|||.++.+.+
T Consensus 40 a~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999998665433
No 369
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.66 E-value=0.42 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHHHcCCCEEEEeecCCcchhhh
Q 005742 183 SAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 183 ~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
+++-++.|++..+|+|+|||-.|
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHH
Confidence 55667889999999999999654
No 370
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.65 E-value=1 Score=44.05 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=50.4
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccC------CeEEEEcCchHHHHHHHHH-HHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTG------KVVVVISPLISLMHDQCSK-LSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~------~~vLvl~Pt~~L~~q~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+.+.+++|+|||...+..+. ..+ ..++++..-..+-.+.... ...++.. .....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~-------------~~~~~ 85 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD-------------PEEVL 85 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc-------------hhhhh
Confidence 45678999999999975443222 244 6778877654332222211 2222111 00111
Q ss_pred cCCccEEE---EChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 258 RGMYSIIY---VCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 258 ~~~~~Ili---~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
. ++.+ .+++.+...++.+........+++||||=.-.+
T Consensus 86 ~---~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 86 D---NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred c---cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 1 2333 345555555544333333568999999998765
No 371
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=1.6 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.4
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+.+|.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765444
No 372
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.61 E-value=0.59 Score=57.57 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh---hcc---CCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCC
Q 005742 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA---LLT---GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ 247 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~---l~~---~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 247 (679)
+|+-|.+||.. .+++++|.|.-|||||.+.+--+ +.. -.++|+|+=|+..+.++..++.+.-..... ..
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~---~~ 76 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQ---QE 76 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh---cC
Confidence 68999999973 58899999999999997654222 222 246999999999999988888764211110 11
Q ss_pred CcHHHHHHHHcCCccEEEEChHHHH-HHHHHHHHHHhhcCceEEEeecccc
Q 005742 248 PDNKVEQKALRGMYSIIYVCPETVI-RLIKPLQRLAESRGIALFAIDEVHC 297 (679)
Q Consensus 248 ~~~~~~~~~~~~~~~Ili~Tp~~l~-~ll~~~~~~~~~~~~~lvViDEaH~ 297 (679)
+......+.+..-...-|+|...+. ++++.....+.+ +-.+=|.||...
T Consensus 77 p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 77 PNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred chhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 1212223334444567889988776 344422111111 224556787765
No 373
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.48 E-value=0.53 Score=54.88 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhhc-----cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEc
Q 005742 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~ 244 (679)
..|++-|++|+... ...++|.|..|||||.+.. +.-+. ...++|+++-|+..+.++.+++.+..-.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 36899999998753 4689999999999996443 22221 2358999999999999999888874210
Q ss_pred CCCCcHHHHHHHHcCCccEEEEChHHHHH-HHHHHHHHHhhcCceEEEeecccc
Q 005742 245 SGQPDNKVEQKALRGMYSIIYVCPETVIR-LIKPLQRLAESRGIALFAIDEVHC 297 (679)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~-ll~~~~~~~~~~~~~lvViDEaH~ 297 (679)
....+.|+|...+.. ++........+ .-.+-|+|+.+.
T Consensus 76 --------------~~~~~~i~TFHs~~~~iLr~~~~~~g~-~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 --------------VAEDIWISTFHSMCVRILRRDIDRIGI-NRNFSIIDPTDQ 114 (726)
T ss_pred --------------ccCCcEEEcHHHHHHHHHHHHHHHhCC-CCCCCcCCHHHH
Confidence 013578899887763 44421111111 233457787763
No 374
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.43 E-value=0.31 Score=54.74 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=47.3
Q ss_pred CCEEEEeecCCcchhhhhhhhhcc-CCeEEEEcCchHHHHHHHHHHHhcC-CceEEEcC
Q 005742 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHG-VTACFLGS 245 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~-~~~~~~~~ 245 (679)
.++++.||||+|||..+++|.++. ++.++|+=|.-++..-.....++.| .++.++.-
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 589999999999999999999765 7789999999999887777777776 66665543
No 375
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.30 E-value=2.7 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.0
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
..|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47889999999998765444
No 376
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.26 E-value=2.5 Score=44.62 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=13.6
Q ss_pred hcCceEEEeecccccc
Q 005742 284 SRGIALFAIDEVHCVS 299 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~ 299 (679)
.....++||||+|.+.
T Consensus 139 ~~~~kVviIDead~m~ 154 (365)
T PRK07471 139 EGGWRVVIVDTADEMN 154 (365)
T ss_pred cCCCEEEEEechHhcC
Confidence 3578899999999985
No 377
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=91.19 E-value=0.27 Score=49.06 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005742 5 GTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
..+.++.|.++++||++.....+|+.+-=-.-+-||||+++|=.-
T Consensus 132 G~~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~GIP~ 176 (340)
T KOG0011|consen 132 GSEYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNGIPE 176 (340)
T ss_pred cchhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcCCcc
Confidence 346789999999999999999999999887788999999998543
No 378
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=2.6 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.2
Q ss_pred CCEEEEeecCCcchhhhhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~ 209 (679)
...|+.+|.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 356999999999997665443
No 379
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.14 E-value=3.6 Score=42.39 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHH----cCC---CEEEEeecCCcchhhh
Q 005742 173 SLKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCF 205 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l----~g~---d~iv~a~TGsGKTl~~ 205 (679)
.++|+|...+..+. +++ -.++.+|.|.||+..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 45677777766554 333 4789999999999644
No 380
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.10 E-value=1.3 Score=41.30 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEEC
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 267 (679)
-++++|+.||||..-+.-+. ..+.++++..|-..- +++...+.-..|... .-++|-.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~---------R~~~~~V~Sr~G~~~-----------~A~~i~~ 66 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT---------RYGVGKVSSRIGLSS-----------EAVVIPS 66 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc---------ccccceeeeccCCcc-----------cceecCC
Confidence 57899999999974433332 367888888885321 122222222222221 2355556
Q ss_pred hHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 268 p~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+..+...+.... ....++.|.||||+-+.
T Consensus 67 ~~~i~~~i~~~~---~~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 67 DTDIFDEIAALH---EKPPVDCVLIDEAQFFD 95 (201)
T ss_pred hHHHHHHHHhcc---cCCCcCEEEEehhHhCC
Confidence 665555444211 11228899999999764
No 381
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.09 E-value=2.9 Score=45.22 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=54.3
Q ss_pred CCCEEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHHh--cCCceEEEcCCCCcHHHHH------H
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQ------K 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~~--~~~~~~~~~~~~~~~~~~~------~ 255 (679)
|.=+++.|++|.|||...+-.+ ...+..++|++.- .=..|...++-. .++....+..+......+. .
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4557889999999996544322 2357788888732 224444444332 2333222222222221111 1
Q ss_pred HHcCCccEEEE-ChH-HHHHHHHHHHHHHhh-cCceEEEeeccccccc
Q 005742 256 ALRGMYSIIYV-CPE-TVIRLIKPLQRLAES-RGIALFAIDEVHCVSK 300 (679)
Q Consensus 256 ~~~~~~~Ili~-Tp~-~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~ 300 (679)
.+.. ..+.|. +|. .+..+.......... ..+++||||=.|.+..
T Consensus 273 ~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 273 RLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1222 234443 222 122222222222222 3699999999888853
No 382
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.06 E-value=1.3 Score=48.54 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCCEEEEeecCCcchhhh
Q 005742 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
.+.+++.+|+|+|||+++
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999754
No 383
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.00 E-value=0.69 Score=51.28 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=70.9
Q ss_pred HHhhhccCCCCCCcEEEEeCch----hHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-cccC
Q 005742 501 ERLSMLQEPLEDGLTIIYVPTR----KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMG 575 (679)
Q Consensus 501 ~ll~~l~~~~~~~~~IVF~~t~----~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~~~G 575 (679)
.++..+.....+.++.+-+||- .+.+.+.++|...|+.+..+.|.+..+.|+.+++...+|.++++|.|-+ +-..
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 3344444444567999999995 5666666677778999999999999999999999999999999999976 6778
Q ss_pred cccccccEEEE
Q 005742 576 IDKLNVRRIIH 586 (679)
Q Consensus 576 iDip~v~~VI~ 586 (679)
+++.+.-+||.
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 99999888883
No 384
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.83 E-value=2.4 Score=47.48 Aligned_cols=62 Identities=8% Similarity=0.006 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHH---HcCCCEEEEeecCCcchhhhhhh---hhc-cCCeEEEEcCchHHHHHHHHHHHh
Q 005742 174 LKNFQKEALSAW---LAHHDCLVLAATGSGKSLCFQIP---ALL-TGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 174 ~~~~Q~~ai~~~---l~g~d~iv~a~TGsGKTl~~~lp---~l~-~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
|.|.=.+=|..+ .+.+-.++.+|-|.|||.+..+. ++. .+.+++|.+|...-+++.++.+.+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 344444444444 44567899999999999754322 122 578999999998888887776655
No 385
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.76 E-value=1.3 Score=50.36 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=14.8
Q ss_pred EEEEeecCCcchhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp 208 (679)
.|+.||.|+|||.++.+.
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 589999999999876544
No 386
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.67 E-value=1.3 Score=48.08 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=45.4
Q ss_pred CCEEEEeecCCcchhhhhhhh-h---ccCC-eEE-EEcCc-hHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcCC
Q 005742 189 HDCLVLAATGSGKSLCFQIPA-L---LTGK-VVV-VISPL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGM 260 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~-l---~~~~-~vL-vl~Pt-~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (679)
+-+.+++|||+|||.+....+ . ..+. ++. |-+-+ +.-+.++...+.+ +++........... ......+...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl-~~aL~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADL-RLALSELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhH-HHHHHhccCC
Confidence 346789999999997655333 2 2332 343 33333 3335555655544 56655443332221 2222233344
Q ss_pred ccEEEEChHHHHH
Q 005742 261 YSIIYVCPETVIR 273 (679)
Q Consensus 261 ~~Ili~Tp~~l~~ 273 (679)
..|+|=|+++...
T Consensus 336 d~VLIDTaGr~~~ 348 (484)
T PRK06995 336 HIVLIDTIGMSQR 348 (484)
T ss_pred CeEEeCCCCcChh
Confidence 5789999996653
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.66 E-value=1.5 Score=47.07 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=44.6
Q ss_pred CEEEEeecCCcchhhhhhhh-h---ccCCeEEEEc-C-chHHHHHHHHHH-HhcCCceEEEcCCCCcHHHH----HHHHc
Q 005742 190 DCLVLAATGSGKSLCFQIPA-L---LTGKVVVVIS-P-LISLMHDQCSKL-SKHGVTACFLGSGQPDNKVE----QKALR 258 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~-l---~~~~~vLvl~-P-t~~L~~q~~~~l-~~~~~~~~~~~~~~~~~~~~----~~~~~ 258 (679)
-+++++++|+|||.+..-.+ . ..+.+++++. . .|+-+.+|...+ ...++.......+....... .....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~ 180 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE 180 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh
Confidence 46789999999997654332 2 2355555544 3 344455555444 44566655443322221211 12223
Q ss_pred CCcc-EEEEChHHH
Q 005742 259 GMYS-IIYVCPETV 271 (679)
Q Consensus 259 ~~~~-Ili~Tp~~l 271 (679)
..++ |+|=||+++
T Consensus 181 ~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 181 NGFDVVIVDTAGRL 194 (428)
T ss_pred cCCCEEEEeCCCcc
Confidence 4454 888899876
No 388
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.63 E-value=1.1 Score=44.06 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCEEEEeecCCcchhhhhhhh-h--cc------CCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA-L--LT------GKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~-l--~~------~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|+-+.+.+|.|+|||...+-.+ . .+ +..++++.--... .....+.+..++.. .....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~-------------~~~~~ 85 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD-------------PEEVL 85 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC-------------hHhHh
Confidence 4567899999999996544322 2 22 3678887743321 11111222222221 01111
Q ss_pred cCCccEEEE---ChHHHHHHHHHHHHHHhhc-CceEEEeeccccc
Q 005742 258 RGMYSIIYV---CPETVIRLIKPLQRLAESR-GIALFAIDEVHCV 298 (679)
Q Consensus 258 ~~~~~Ili~---Tp~~l~~ll~~~~~~~~~~-~~~lvViDEaH~l 298 (679)
. +|.+. +.+.+..++..+...+... .+++||||-.-.+
T Consensus 86 ~---~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~ 127 (235)
T cd01123 86 D---NIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTAL 127 (235)
T ss_pred c---CEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHH
Confidence 1 23332 3455555555555544445 8999999999876
No 389
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=3.1 Score=46.21 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.2
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+.+|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999997665443
No 390
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.57 E-value=4.2 Score=45.79 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.2
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
..|+.+|.|+|||.++.+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765444
No 391
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.56 E-value=0.32 Score=50.62 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=29.7
Q ss_pred HHcCCCEEEEeecCCcchhhh--hhhhhccCCeEEEEcCchHHH
Q 005742 185 WLAHHDCLVLAATGSGKSLCF--QIPALLTGKVVVVISPLISLM 226 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~--~lp~l~~~~~vLvl~Pt~~L~ 226 (679)
+..+++++++++||||||... ++-.+-...+++.+-.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 345789999999999999632 222233456788888887764
No 392
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=90.50 E-value=0.27 Score=35.25 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCC
Q 005742 9 DEVIAKLIEMGFDDSDITEAVETVGP 34 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (679)
..+|..+..|||+.+.+.+|++.+|=
T Consensus 10 ~~lVd~F~~mGF~~dkVvevlrrlgi 35 (55)
T PF09288_consen 10 KDLVDQFENMGFERDKVVEVLRRLGI 35 (55)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 35789999999999999999999993
No 393
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.49 E-value=5.4 Score=44.61 Aligned_cols=161 Identities=11% Similarity=0.169 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhhh--hhhh---ccCCeEEEEcCchHHHHHHH
Q 005742 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPAL---LTGKVVVVISPLISLMHDQC 230 (679)
Q Consensus 156 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~--lp~l---~~~~~vLvl~Pt~~L~~q~~ 230 (679)
...+.+...|+..|++..+.. ++-...+.+-.++..|-=.|||.+.. +..+ ..+.++++.+|.+..++..+
T Consensus 226 ~~a~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF 301 (738)
T PHA03368 226 DHAERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVF 301 (738)
T ss_pred HHHHHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHH
Confidence 355566777777777754443 23334556788999999999997433 2222 36999999999999999888
Q ss_pred HHHHhc----C-Cc-eEEEcCCCCcHHHHHHHHcCC-ccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCC
Q 005742 231 SKLSKH----G-VT-ACFLGSGQPDNKVEQKALRGM-YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (679)
Q Consensus 231 ~~l~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~-~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~ 303 (679)
+++... . .. +..+. |... ......+. ..|.+.+.. . .+...=..++++|||||+-+..
T Consensus 302 ~eI~~~le~~f~~~~v~~vk-Ge~I---~i~f~nG~kstI~FaSar------n--tNsiRGqtfDLLIVDEAqFIk~--- 366 (738)
T PHA03368 302 EEIGARLRQWFGASRVDHVK-GETI---SFSFPDGSRSTIVFASSH------N--TNGIRGQDFNLLFVDEANFIRP--- 366 (738)
T ss_pred HHHHHHHhhhcchhheeeec-CcEE---EEEecCCCccEEEEEecc------C--CCCccCCcccEEEEechhhCCH---
Confidence 887763 1 11 11111 1111 00001111 245555321 0 1122234699999999998863
Q ss_pred CchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhhHHHH
Q 005742 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDI 348 (679)
Q Consensus 304 ~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~i 348 (679)
..+..+.-++.. .+.+++.+|-|-+.+...-+
T Consensus 367 ---~al~~ilp~l~~----------~n~k~I~ISS~Ns~~~sTSF 398 (738)
T PHA03368 367 ---DAVQTIMGFLNQ----------TNCKIIFVSSTNTGKASTSF 398 (738)
T ss_pred ---HHHHHHHHHHhc----------cCccEEEEecCCCCccchHH
Confidence 233333222111 17889999988665443333
No 394
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.44 E-value=1.6 Score=45.49 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH---cCCCEEEEeecCCcchhhh
Q 005742 176 NFQKEALSAWL---AHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 176 ~~Q~~ai~~~l---~g~d~iv~a~TGsGKTl~~ 205 (679)
++-..+|..+. +|+.+++.+|.|+|||...
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl 150 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL 150 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH
Confidence 44455666655 6889999999999999643
No 395
>PRK08840 replicative DNA helicase; Provisional
Probab=90.43 E-value=4.1 Score=44.44 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred CCCEEEEeecCCcchhhhhhh----hhccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHHH------
Q 005742 188 HHDCLVLAATGSGKSLCFQIP----ALLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQK------ 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp----~l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~------ 255 (679)
|.=+++.|.+|.|||..++-. +...+..++|.+.--+ ..|+..++-.. ++....+..+.-....+..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMG 295 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 445677889999999754322 2234677888765322 45555554332 3322222223222222211
Q ss_pred HHcCCccEEEE-ChH-HHHHHHHHHHHHHhh-cCceEEEeeccccccc
Q 005742 256 ALRGMYSIIYV-CPE-TVIRLIKPLQRLAES-RGIALFAIDEVHCVSK 300 (679)
Q Consensus 256 ~~~~~~~Ili~-Tp~-~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~ 300 (679)
.+.....+.|- +|. .+..+....+..... ..+++||||=.|.+..
T Consensus 296 ~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 296 ILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence 12122334443 222 122222222222222 3589999999998853
No 396
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.38 E-value=0.71 Score=45.75 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHcCCCEEEEeecCCcchhhh
Q 005742 185 WLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 185 ~l~g~d~iv~a~TGsGKTl~~ 205 (679)
+-+|+.+++.+|.|+|||...
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346889999999999999643
No 397
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.37 E-value=0.6 Score=48.10 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.3
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
.++++.+|.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999644
No 398
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.35 E-value=1.2 Score=45.84 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=53.3
Q ss_pred CCCEEEEeecCCcchhhhh-hhh--hc------cCCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQ-IPA--LL------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~--l~------~~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+.+.+|.|+|||...+ +.+ .. .+++++||.---.+ ..+..+...++++.. . ..+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~---------~----~~l 162 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDP---------D----AVL 162 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCCh---------H----Hhc
Confidence 5668899999999995433 222 11 25688888755433 333333344443221 0 011
Q ss_pred cCCccEEE---EChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 258 RGMYSIIY---VCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 258 ~~~~~Ili---~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
. +|.+ -+.+.+..++..+...+.-.++++||||=+-.+
T Consensus 163 ~---~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 163 D---NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred C---cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 1 2333 245555555554444444568999999987755
No 399
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.32 E-value=2.7 Score=46.32 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.1
Q ss_pred EEEEeecCCcchhhhhh
Q 005742 191 CLVLAATGSGKSLCFQI 207 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~l 207 (679)
.++.+|.|+|||.++..
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 49999999999976543
No 400
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.26 E-value=6.9 Score=38.09 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCCEEEEeecCCcchhhh-hhh--hhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCF-QIP--ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~-~lp--~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|.-+++.+++|+|||... .+. .+..+..++++.-.. -..+..+.+..++.... ........++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~~~~-------------~~~~~~l~~~ 81 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGWDLE-------------DYIDKSLYIV 81 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCCChH-------------HHHhCCeEEE
Confidence 456889999999998543 332 245677888887654 46777777777764310 1111112233
Q ss_pred EEChHHHH----HHHHHHHHHHhhcCceEEEeeccccc
Q 005742 265 YVCPETVI----RLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 265 i~Tp~~l~----~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
-..+..+. .+...+.........+++|||=...+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l 119 (224)
T TIGR03880 82 RLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLL 119 (224)
T ss_pred ecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHH
Confidence 23443332 22222233334456889999966654
No 401
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=3.3 Score=42.49 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
-+.+|+.+|+|+|||+.+=.
T Consensus 185 PKGVLLYGPPGTGKTLLAkA 204 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKA 204 (406)
T ss_pred CCceEeeCCCCCcHHHHHHH
Confidence 46899999999999987633
No 402
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.20 E-value=4.2 Score=39.77 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCCEEEEeecCCcchhhhh---hhhhccCCeEEEEcCchHHHHHHHHHHHhcC
Q 005742 188 HHDCLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHG 237 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~---lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~ 237 (679)
|..+++.+++|+|||..++ ...+.++..++++.-- +...+..+....++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e-~~~~~i~~~~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE-ESRESIIRQAAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHHHHhC
Confidence 5678999999999996443 2234567778777742 33455555555544
No 403
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.20 E-value=2.6 Score=48.79 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHh
Q 005742 4 SGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (679)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (679)
+-+...|+...|++.+ .+.+.++.+|-..+++.+.+.
T Consensus 23 ~~~~~~h~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 59 (758)
T PRK11034 23 EFMTVEHLLLALLSNP----SAREALEACSVDLVALRQELE 59 (758)
T ss_pred CcchHHHHHHHHHcCh----hHHHHHHHcCCCHHHHHHHHH
Confidence 3467788888887542 377888889988666644443
No 404
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.15 Score=50.97 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=16.0
Q ss_pred CCCEEEEeecCCcchhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~ 206 (679)
.-|+++++|||||||+.++
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3589999999999998554
No 405
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.12 E-value=5.3 Score=42.82 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=15.2
Q ss_pred CEEEEeecCCcchhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp 208 (679)
..|+.+|.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3789999999999766543
No 406
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.11 E-value=2.9 Score=43.20 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHcCCC------EEEEeecCCcchhhhhhhhhccCCeEEEEcCc-----hHHHHHHHHHHHhcCCceE
Q 005742 173 SLKNFQKEALSAWLAHHD------CLVLAATGSGKSLCFQIPALLTGKVVVVISPL-----ISLMHDQCSKLSKHGVTAC 241 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~g~d------~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt-----~~L~~q~~~~l~~~~~~~~ 241 (679)
..+..|...+..++-.++ +++.+.+|+|||.+-.-..-......+++.+. +.|.++......
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~------- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ------- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc-------
Confidence 467899999998885554 38899999999964322111223344554442 233333333332
Q ss_pred EEcCCCCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhh---cCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAES---RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~---~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
..+.. ..-+=++.+.+.+++..+...... ..--++|+|-|+.+.+++...-+.+-++ .+.
T Consensus 82 --~~d~d------------g~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L---~el 144 (438)
T KOG2543|consen 82 --LADKD------------GDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRL---YEL 144 (438)
T ss_pred --cCCCc------------hhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHH---HHH
Confidence 00111 111112234444444433332222 2356899999999998774444444444 222
Q ss_pred hccccccccCCCCCEEEEEccCChh
Q 005742 319 FGANNLKSLKFDIPLMALTATATIQ 343 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~~ 343 (679)
.. .+.=.+.+++++...
T Consensus 145 ~~--------~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 145 LN--------EPTIVIILSAPSCEK 161 (438)
T ss_pred hC--------CCceEEEEeccccHH
Confidence 21 133367888887654
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.09 E-value=0.76 Score=43.88 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.6
Q ss_pred CCEEEEeecCCcchhhhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp 208 (679)
-++++.+|+|+|||.+.+..
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 38999999999999876543
No 408
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.09 E-value=0.96 Score=54.86 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=63.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-ccccCcccccccEEEE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-AFGMGIDKLNVRRIIH 586 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-~~~~GiDip~v~~VI~ 586 (679)
+.+++|.+||+..+..+++.+.+. ++.+..++|..+.+++..+++.+++|..+|+|+|. .+...+.+.++.+||.
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 568999999999999999888753 46788899999999999999999999999999995 4555677778888773
No 409
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.08 E-value=2.8 Score=43.66 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEeecCCcchhhhh
Q 005742 174 LKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 174 ~~~~Q~~ai~~~l----~g~---d~iv~a~TGsGKTl~~~ 206 (679)
++|+|..++..+. .|+ -.++.+|.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5677777777654 333 46799999999996543
No 410
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.08 E-value=0.71 Score=50.19 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCEEEEeecCCcchhhhh--hhhh-------ccCCeEEEEcCchHHHHHHHHHHHhcCCce
Q 005742 188 HHDCLVLAATGSGKSLCFQ--IPAL-------LTGKVVVVISPLISLMHDQCSKLSKHGVTA 240 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~--lp~l-------~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~ 240 (679)
++-++|++..|||||.+++ ++.+ +.++.+||+.|.+-++.-+.+.|-.+|...
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~~ 287 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEEG 287 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccCc
Confidence 4568999999999998776 2222 135669999999999888888887776543
No 411
>PHA00350 putative assembly protein
Probab=90.00 E-value=1.3 Score=46.69 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=16.9
Q ss_pred EEEEeecCCcchhhhh----hhhhccCC
Q 005742 191 CLVLAATGSGKSLCFQ----IPALLTGK 214 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~----lp~l~~~~ 214 (679)
.++.+..|||||+-++ +|++..|.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999997554 34444554
No 412
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.89 E-value=0.5 Score=46.66 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=14.9
Q ss_pred CEEEEeecCCcchhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
++++.+|.|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 689999999999975433
No 413
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.81 E-value=0.46 Score=53.89 Aligned_cols=56 Identities=23% Similarity=0.179 Sum_probs=43.9
Q ss_pred CCEEEEeecCCcchhhhhhhhhc-cCCeEEEEcCchHHHHHHHHHHHh-cCCceEEEc
Q 005742 189 HDCLVLAATGSGKSLCFQIPALL-TGKVVVVISPLISLMHDQCSKLSK-HGVTACFLG 244 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~-~~~~vLvl~Pt~~L~~q~~~~l~~-~~~~~~~~~ 244 (679)
.+++++||||||||..+++|.+. .+..+||+=|--++..-.....++ .|..+..+.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 58999999999999999999976 477899999999997666555544 355555443
No 414
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=89.80 E-value=0.5 Score=54.57 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHcCCCEEEEeecCCcchhhhhhhh--hc-----cCCeEEEEcCchHHHHHHHHHHHhc
Q 005742 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA--LL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~--l~-----~~~~vLvl~Pt~~L~~q~~~~l~~~ 236 (679)
|++-|++++... ..+++|.|..|||||.+-+--+ +. ....+|+|+.|+..+.++.+++.+.
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 789999988652 5689999999999996543222 11 3468999999999999999888763
No 415
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.78 E-value=13 Score=38.03 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=73.0
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEc-Cc-hHHHHHHHHHHHh-cCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVIS-PL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~-Pt-~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
+++++-.|+|||.+..-.+. ..+.++++.+ .| |+=+.+|.+.|.+ .|+.++....|..... |+
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa-----------Va 210 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA-----------VA 210 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH-----------HH
Confidence 67899999999986553332 3566666554 33 6666666666655 5766555332222211 11
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCChhh
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQV 344 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~ 344 (679)
.+-++ ....+++++|++|=|-|+-... ++-..+.+|.++...... -.|..-++.+=||..++.
T Consensus 211 -------fDAi~----~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~-----~ap~e~llvlDAttGqna 273 (340)
T COG0552 211 -------FDAIQ----AAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDP-----DAPHEILLVLDATTGQNA 273 (340)
T ss_pred -------HHHHH----HHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccC-----CCCceEEEEEEcccChhH
Confidence 11112 2345689999999999996521 155566666555443211 011222556689998875
Q ss_pred HHH
Q 005742 345 RED 347 (679)
Q Consensus 345 ~~~ 347 (679)
...
T Consensus 274 l~Q 276 (340)
T COG0552 274 LSQ 276 (340)
T ss_pred HHH
Confidence 543
No 416
>PRK05748 replicative DNA helicase; Provisional
Probab=89.78 E-value=4.3 Score=44.27 Aligned_cols=110 Identities=22% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCEEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHH-hc-CCceEEEcCCCCcHHHHH------H
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLS-KH-GVTACFLGSGQPDNKVEQ------K 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~-~~-~~~~~~~~~~~~~~~~~~------~ 255 (679)
|.-++|.|+||.|||...+-.+ ...+..++|++.- .-..|+..++- .. ++....+..+.-....+. .
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 281 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMG 281 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 3457889999999996444222 1246677777543 22455555553 22 222221222222222111 1
Q ss_pred HHcCCccEEEE-ChH-HHHHHHHHHHHHHhhc-CceEEEeecccccc
Q 005742 256 ALRGMYSIIYV-CPE-TVIRLIKPLQRLAESR-GIALFAIDEVHCVS 299 (679)
Q Consensus 256 ~~~~~~~Ili~-Tp~-~l~~ll~~~~~~~~~~-~~~lvViDEaH~l~ 299 (679)
.+.. ..+.|. +|. .+..+........... ++++||||=.|.+.
T Consensus 282 ~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 282 SLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1222 234443 332 1222222222332233 69999999999885
No 417
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.70 E-value=2.6 Score=43.28 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.6
Q ss_pred CCCEEEEeecCCcchhh
Q 005742 188 HHDCLVLAATGSGKSLC 204 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~ 204 (679)
++.+++.+++|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999954
No 418
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.61 E-value=2.4 Score=46.97 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=24.7
Q ss_pred CccEEEEChHHHHHHHHHHHHHHhh-cCceEEEeeccccccc
Q 005742 260 MYSIIYVCPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSK 300 (679)
Q Consensus 260 ~~~Ili~Tp~~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~ 300 (679)
.+++|+--++.|+.--. ++.+.+ -.=..|||||||.+.+
T Consensus 323 ~aqlV~LPYQ~LL~~st--R~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 323 QAQLVTLPYQLLLHEST--RKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred cccEEeccHHHHHhHHH--HHhcCccccccEEEEechhHHHH
Confidence 47899998987764222 222211 1235799999998854
No 419
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=89.58 E-value=0.53 Score=53.38 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=44.5
Q ss_pred CCEEEEeecCCcchhhhhhhhhcc-CCeEEEEcCchHHHHHHHHHHHhcCCceEEE
Q 005742 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l~~-~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~ 243 (679)
.+++++||||||||..+++|.++. ...+||+=|--++........+++| .+..+
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~F 199 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLF 199 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEE
Confidence 689999999999999999999864 6788999999999887777766666 44434
No 420
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.55 E-value=2.2 Score=48.52 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCHHHHH---HHHHHHcCC--CEEEEeecCCcchhhhhhhhh---cc--CCeEEEEcCchHHHHHHHHHH----HhcCCc
Q 005742 174 LKNFQKE---ALSAWLAHH--DCLVLAATGSGKSLCFQIPAL---LT--GKVVVVISPLISLMHDQCSKL----SKHGVT 239 (679)
Q Consensus 174 ~~~~Q~~---ai~~~l~g~--d~iv~a~TGsGKTl~~~lp~l---~~--~~~vLvl~Pt~~L~~q~~~~l----~~~~~~ 239 (679)
.+.-|.+ .+..++..+ -+++.|.-|=|||.+.-+.+. .. ..+++|.+|+.+=++..++.+ ..+|.+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~ 291 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYK 291 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCc
Confidence 4455555 455555543 578899999999976654332 23 359999999988766665544 334544
Q ss_pred eEEEcCC-CCcHHHHHHHHcCCccEEEEChHHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHh
Q 005742 240 ACFLGSG-QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (679)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~Ili~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~ 318 (679)
..+.... +.... .......|=+.+|.... ..-+++|||||=.+. -+.+.++. .
T Consensus 292 ~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIp------lplL~~l~---~- 345 (758)
T COG1444 292 RKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIP------LPLLHKLL---R- 345 (758)
T ss_pred cccccccccceee----ecCCceeEEeeCcchhc------------ccCCEEEEehhhcCC------hHHHHHHH---h-
Confidence 3222211 11110 11123457778886332 116899999998773 44444442 1
Q ss_pred hccccccccCCCCCEEEEEccCCh
Q 005742 319 FGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 319 ~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
..+.++||.|...
T Consensus 346 -----------~~~rv~~sTTIhG 358 (758)
T COG1444 346 -----------RFPRVLFSTTIHG 358 (758)
T ss_pred -----------hcCceEEEeeecc
Confidence 3478999999844
No 421
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.54 E-value=0.45 Score=55.87 Aligned_cols=111 Identities=9% Similarity=-0.049 Sum_probs=85.1
Q ss_pred HHHhhhccCCCCCCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecccccCcccc
Q 005742 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL 579 (679)
Q Consensus 500 ~~ll~~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~~~~GiDip 579 (679)
..++.+++-.....++|||+.-....+.++..+...++.....-+ .++-...+..|++ --.+|+-+...+-|+|+-
T Consensus 1209 ~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~ 1284 (1394)
T KOG0298|consen 1209 VIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLI 1284 (1394)
T ss_pred HHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHH
Confidence 344555555555679999999998888888888776665444332 2334455666666 334678889999999999
Q ss_pred cccEEEEeCCCCCHHHHHHHhhccccCCCCceEEE
Q 005742 580 NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614 (679)
Q Consensus 580 ~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~g~~~~ 614 (679)
+..+|+..++-.++.+-.|.+||.+|.||.-...+
T Consensus 1285 eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1285 EATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred hhhhhheeccccCchHHHhhhhhhhhcccccchhh
Confidence 99999999999999999999999999999865544
No 422
>PRK05636 replicative DNA helicase; Provisional
Probab=89.50 E-value=3.4 Score=45.56 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=51.4
Q ss_pred EEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHHH------HHc
Q 005742 191 CLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQK------ALR 258 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~------~~~ 258 (679)
+++.|.||.|||..++-.+ ...+..++|.+.- .-..|...++-.. ++....+..+......+.+ .+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE-Ms~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~ 346 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE-MSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIA 346 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 5778899999996444222 2346677777432 1133443333221 2222122233322222211 122
Q ss_pred CCccEEEE-ChH-HHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 259 GMYSIIYV-CPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 259 ~~~~Ili~-Tp~-~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
. ..+.|- +|. .+..+....+.......+++||||=.|.+.
T Consensus 347 ~-~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 347 Q-APIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMS 388 (505)
T ss_pred c-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 2 344443 332 122332322333334579999999999885
No 423
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.43 E-value=2.3 Score=47.60 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.0
Q ss_pred CEEEEeecCCcchhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp 208 (679)
-.|+++|.|+|||.++-+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999766443
No 424
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.38 E-value=0.55 Score=47.41 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=28.8
Q ss_pred HHHHHHHH-HcCCCEEEEeecCCcchhhh--hhhhhccC-CeEEEEcCchHH
Q 005742 178 QKEALSAW-LAHHDCLVLAATGSGKSLCF--QIPALLTG-KVVVVISPLISL 225 (679)
Q Consensus 178 Q~~ai~~~-l~g~d~iv~a~TGsGKTl~~--~lp~l~~~-~~vLvl~Pt~~L 225 (679)
..+.+... ..+.+++++++||||||... ++-.+-.. .+++++-.+.++
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 33344433 34679999999999999643 22222234 677777766554
No 425
>PRK08506 replicative DNA helicase; Provisional
Probab=89.38 E-value=3.6 Score=45.10 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHh--cCCceEEEcCCCCcHHHHH------HH
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQ------KA 256 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~--~~~~~~~~~~~~~~~~~~~------~~ 256 (679)
|.=+++.|.||.|||..++-.+ ...+..++|++.- .=..|...++-. .++....+..+.-....+. ..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 270 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDE 270 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3456788899999997544322 2356677777543 225566655533 2332222222222222111 11
Q ss_pred HcCCccEEEE-ChH-HHHHHHHHHHHHHh-hcCceEEEeeccccccc
Q 005742 257 LRGMYSIIYV-CPE-TVIRLIKPLQRLAE-SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 257 ~~~~~~Ili~-Tp~-~l~~ll~~~~~~~~-~~~~~lvViDEaH~l~~ 300 (679)
+... .+.|- ++. .+..+....+.... ...+++||||=.+.+..
T Consensus 271 l~~~-~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 271 LSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHcC-CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 2222 34442 222 22222222222222 23689999999998853
No 426
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.32 E-value=1.3 Score=48.70 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=61.7
Q ss_pred HHHHHHHc-----CCCEEEEeecCCcchhhhhh---hhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHH
Q 005742 180 EALSAWLA-----HHDCLVLAATGSGKSLCFQI---PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK 251 (679)
Q Consensus 180 ~ai~~~l~-----g~d~iv~a~TGsGKTl~~~l---p~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 251 (679)
..+..++. |.-+++.+|+|+|||...+- -.+.++.++++++ .-+-..|..+.+..+|+..
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~----------- 317 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDF----------- 317 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCCh-----------
Confidence 34555553 45689999999999964432 2234677888887 4456788888888876531
Q ss_pred HHHHHHcCCccEEEEChHH--HHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 252 VEQKALRGMYSIIYVCPET--VIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 252 ~~~~~~~~~~~Ili~Tp~~--l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
......+...++-.-|.. +..++..+...+...+.+.||||=..-+.
T Consensus 318 -~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 318 -EEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred -HHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 000111212232222211 11233333444455678999999887653
No 427
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.22 E-value=1.1 Score=49.74 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.1
Q ss_pred EEEEeecCCcchhhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~ 209 (679)
.|+.+|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999997665433
No 428
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.22 E-value=5.8 Score=41.13 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHc--CC---CEEEEeecCCcchhhhh
Q 005742 175 KNFQKEALSAWLA--HH---DCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 175 ~~~Q~~ai~~~l~--g~---d~iv~a~TGsGKTl~~~ 206 (679)
+|+|..++..+.. ++ -.++.+|.|.|||..+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 5777777777663 32 47899999999996543
No 429
>PRK05595 replicative DNA helicase; Provisional
Probab=89.19 E-value=2.7 Score=45.81 Aligned_cols=110 Identities=24% Similarity=0.212 Sum_probs=54.4
Q ss_pred CCEEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHHH------H
Q 005742 189 HDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQK------A 256 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~------~ 256 (679)
.=+++.|.||.|||..++-.+ ...+.+|+|++.-- =..|...++-.. ++....+..+.-....+.. .
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm-s~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~ 280 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM-SKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGP 280 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345778899999997544222 23577888886532 244555553332 3332222222222211111 1
Q ss_pred HcCCccEEEE-ChHH-HHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 257 LRGMYSIIYV-CPET-VIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 257 ~~~~~~Ili~-Tp~~-l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
+.. ..+.|- +++. +..+....+......++++||||=.|.+..
T Consensus 281 l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 281 LAA-AKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSG 325 (444)
T ss_pred Hhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccC
Confidence 111 233332 2221 222322223333335799999999998863
No 430
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.07 E-value=0.61 Score=48.59 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCEEEEeecCCcchhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
..+++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 478999999999997553
No 431
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.02 E-value=0.38 Score=49.90 Aligned_cols=41 Identities=7% Similarity=0.232 Sum_probs=28.4
Q ss_pred HcCCCEEEEeecCCcchhh--hhhhhhccCCeEEEEcCchHHH
Q 005742 186 LAHHDCLVLAATGSGKSLC--FQIPALLTGKVVVVISPLISLM 226 (679)
Q Consensus 186 l~g~d~iv~a~TGsGKTl~--~~lp~l~~~~~vLvl~Pt~~L~ 226 (679)
..+++++++++||||||.. +++..+-...+++.+=-+.+|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccc
Confidence 3567999999999999953 2333333466777776666653
No 432
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.02 E-value=3.2 Score=45.11 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHH------H
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQ------K 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~------~ 255 (679)
|.=++|.|++|+|||...+-.+. ..+..+++++.-- =..|..+++... ++....+..+......+. .
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm-~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM-SAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC-CHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHH
Confidence 34568899999999964442221 2466787776432 244554444432 332222222222221111 1
Q ss_pred HHcCCccEEE-EChH-HHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 256 ALRGMYSIIY-VCPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 256 ~~~~~~~Ili-~Tp~-~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
.+... .+.| .+|. .+..+...........++++||||=.+.+.
T Consensus 274 ~l~~~-~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 274 KLSEA-PLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHhcC-CEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 22222 3443 2332 222333332333334569999999988875
No 433
>PTZ00293 thymidine kinase; Provisional
Probab=88.83 E-value=2.3 Score=40.69 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=25.0
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCch
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~ 223 (679)
|+=-++.+|+++|||.-.+-.+. ..+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 44468899999999963333222 3577888888864
No 434
>PRK08006 replicative DNA helicase; Provisional
Probab=88.80 E-value=7.6 Score=42.49 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCCEEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHHH------
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQK------ 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~------ 255 (679)
|.=+++.|.+|.|||.-++-.+ ...+..|+|.+.--. ..|+..++-.. ++....+..+.-....+.+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~-~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP-GEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC-HHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 3446778899999997544222 234677887764322 44555444332 2322222223222222221
Q ss_pred HHcCCccEEEE-----ChHHHHHHHHHHHHHHhh-cCceEEEeecccccccCCC--CchHHHHHHHHHHHhhcccccccc
Q 005742 256 ALRGMYSIIYV-----CPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGH--DFRPDYRRLSVLRENFGANNLKSL 327 (679)
Q Consensus 256 ~~~~~~~Ili~-----Tp~~l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~~g~--~f~~~~~~l~~~~~~~~~~~~~~~ 327 (679)
.+.....+.|- |+..+..... ..... ..+++||||=.|.+...+. .-...+..+.+-++.+..+
T Consensus 303 ~~~~~~~l~I~d~~~~t~~~i~~~~r---~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke----- 374 (471)
T PRK08006 303 ILLEKRNMYIDDSSGLTPTEVRSRAR---RIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE----- 374 (471)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHH---HHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH-----
Confidence 11122344443 3333333222 22222 3699999999998853221 1112233333322222211
Q ss_pred CCCCCEEEEEc
Q 005742 328 KFDIPLMALTA 338 (679)
Q Consensus 328 ~~~~~~l~lSA 338 (679)
.++++++||-
T Consensus 375 -l~ipVi~LsQ 384 (471)
T PRK08006 375 -LQVPVVALSQ 384 (471)
T ss_pred -hCCeEEEEEe
Confidence 1678888883
No 435
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=1.9 Score=46.42 Aligned_cols=39 Identities=23% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCcc
Q 005742 10 EVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (679)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (679)
..|..+.+.||....=.+.+...+++-.+.+...+.-+.
T Consensus 161 ~~~q~~~~~g~~~~~~~~~~~~~~~~~a~~l~~~l~~~~ 199 (752)
T KOG0734|consen 161 FYIQALQRRGFKTLKSREGVGRRTRSTAERLNESLANSP 199 (752)
T ss_pred HHHHHHHhcccchhhhhhhhcccccccHHHHhHHHhcCc
Confidence 456677778999988888888889888888877766443
No 436
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.76 E-value=2.9 Score=40.84 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.9
Q ss_pred CCCEEEEeecCCcchhhh
Q 005742 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
-+|++..+|+|+|||+.+
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 379999999999999754
No 437
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.75 E-value=5.6 Score=44.95 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=15.7
Q ss_pred CEEEEeecCCcchhhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIPA 209 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~ 209 (679)
..|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999997665433
No 438
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=88.74 E-value=4.8 Score=37.27 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=48.0
Q ss_pred EEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchH-HHHHHHHHHHhcCC-ceEEEcCCCCcHHHHHHHHcCCccEEE
Q 005742 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLIS-LMHDQCSKLSKHGV-TACFLGSGQPDNKVEQKALRGMYSIIY 265 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~-L~~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ili 265 (679)
+.|.--.|=|||.+++=-++ -.+.+|+|+-=.+. --.--...+.+++. .......+-........ .+
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~-----~~--- 77 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEE-----ED--- 77 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGGHH-----HH---
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH-----HH---
Confidence 34455567788887763333 47889999987766 33333444555542 22111111111000000 01
Q ss_pred EChHHHHHHHHHHHHHHhhcCceEEEeecccccccCC
Q 005742 266 VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (679)
Q Consensus 266 ~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g 302 (679)
.......++.....+....+++||+||+=...+.|
T Consensus 78 --~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~g 112 (172)
T PF02572_consen 78 --RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYG 112 (172)
T ss_dssp --HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCC
Confidence 22233344444555556789999999999988877
No 439
>PRK10263 DNA translocase FtsK; Provisional
Probab=88.74 E-value=2.3 Score=50.98 Aligned_cols=17 Identities=47% Similarity=0.556 Sum_probs=14.5
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
-++||.+.||||||.+.
T Consensus 1011 PHLLIAGaTGSGKSv~L 1027 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGV 1027 (1355)
T ss_pred CcEEEecCCCCCHHHHH
Confidence 37899999999999753
No 440
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.72 E-value=2.9 Score=46.27 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=15.1
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.+++.+|+|+|||+.+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999765
No 441
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=2.3 Score=46.51 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhh
Q 005742 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
.+..|..|+.-.+. --+.+|+.+|.|+|||..+
T Consensus 208 ~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 208 HIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred HhcCchhHhhcCCC---CCCceeeeCCCCccHHHHH
Confidence 35677777765432 2478999999999999754
No 442
>PRK10867 signal recognition particle protein; Provisional
Probab=88.64 E-value=12 Score=40.44 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=30.2
Q ss_pred CEEEEeecCCcchhhhhhhhh---cc-CCeEEEEc--CchHHHH-HHHHHHHhcCCceEE
Q 005742 190 DCLVLAATGSGKSLCFQIPAL---LT-GKVVVVIS--PLISLMH-DQCSKLSKHGVTACF 242 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l---~~-~~~vLvl~--Pt~~L~~-q~~~~l~~~~~~~~~ 242 (679)
-+++++++|+|||.+..-.+. .. +.+++++. +.|+-+. |+.......++.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP 161 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe
Confidence 367899999999976553332 23 55555543 3455444 443444445655443
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.63 E-value=0.65 Score=43.92 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEeecCCcchhhh
Q 005742 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~ 205 (679)
.+.+.|.+.+...++ +..+++++|||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 578888888887664 678999999999999643
No 444
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.58 E-value=2.2 Score=44.25 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCCEEEEeecCCcchhhhh-hhhh--c------cCCeEEEEcCchHH-HHHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQ-IPAL--L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~-lp~l--~------~~~~vLvl~Pt~~L-~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+.+++|+|+|||...+ +.+- . .+..+++|.---.+ ..+..+.+..++... ...+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~-------------~~~l 168 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDP-------------DEVL 168 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCCh-------------Hhhh
Confidence 5678899999999995433 3221 1 13478887743322 233333333333210 0111
Q ss_pred cCCccEEEEC---hHHHHHHHHHHHHHHhh-cCceEEEeeccccc
Q 005742 258 RGMYSIIYVC---PETVIRLIKPLQRLAES-RGIALFAIDEVHCV 298 (679)
Q Consensus 258 ~~~~~Ili~T---p~~l~~ll~~~~~~~~~-~~~~lvViDEaH~l 298 (679)
. +|.+.. .+....++..+...+.. ..+++||||=.-.+
T Consensus 169 ~---~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~ 210 (317)
T PRK04301 169 D---NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAH 210 (317)
T ss_pred c---cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHH
Confidence 1 233322 22223334433444433 57999999976655
No 445
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.48 E-value=5.1 Score=45.32 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.7
Q ss_pred EEEEeecCCcchhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp 208 (679)
.|+.+|.|+|||.++.+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 41 YLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999766443
No 446
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.45 E-value=2 Score=45.84 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=15.5
Q ss_pred CCEEEEeecCCcchhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|+|+|||+.+-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 579999999999997653
No 447
>PTZ00035 Rad51 protein; Provisional
Probab=88.43 E-value=2.1 Score=44.58 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCCEEEEeecCCcchhhhhhhhh--c-------cCCeEEEEcCchHHH-HHHHHHHHhcCCceEEEcCCCCcHHHHHHHH
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL--L-------TGKVVVVISPLISLM-HDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l--~-------~~~~vLvl~Pt~~L~-~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
|.-+.+.++.|+|||......+. + .++.+++|.---.+- .+..+...++++.. . ..+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~---------~----~~l 184 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDP---------E----DVL 184 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCCh---------H----hHh
Confidence 34578999999999954432221 1 356777776332211 11222222333210 0 111
Q ss_pred cCCccEEEE---ChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 258 RGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 258 ~~~~~Ili~---Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
. +|.+. +++.+..++..+...+....+++||||=+-.+
T Consensus 185 ~---nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital 225 (337)
T PTZ00035 185 D---NIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATAL 225 (337)
T ss_pred h---ceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence 1 23333 34444444443344444568999999987665
No 448
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=1.9 Score=44.66 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.5
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+|++..+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 79999999999999864
No 449
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.12 E-value=5 Score=42.21 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=13.6
Q ss_pred CEEEEeecCCcchhhh
Q 005742 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
..++.+|.|+|||..+
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999755
No 450
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.98 E-value=0.61 Score=46.80 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCEEEEeecCCcchhhhhhhhhccCCeEEEE
Q 005742 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (679)
Q Consensus 180 ~ai~~~l~g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl 219 (679)
.++..+..++++++.+|+|+|||.++...+...+..++.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3444556689999999999999976654443334444444
No 451
>PRK14701 reverse gyrase; Provisional
Probab=87.88 E-value=1.3 Score=55.62 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHh------CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCG------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~ 571 (679)
+.++||.+||+.-+..+++.|.. .++.+..+||+++.+++..+++.+++|..+|||+|.-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 45899999999999999998887 3567889999999999999999999999999999964
No 452
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.87 E-value=4.7 Score=41.65 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.1
Q ss_pred CEEEEeecCCcchhhh
Q 005742 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
++++.+|+|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999755
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.87 E-value=2.5 Score=49.41 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=15.7
Q ss_pred CCCEEEEeecCCcchhhh
Q 005742 188 HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~ 205 (679)
++.+++.+|+|+|||..+
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 578999999999999754
No 454
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.81 E-value=3.4 Score=48.86 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHc---CCCEEEEeecCCcchhhh
Q 005742 175 KNFQKEALSAWLA---HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 175 ~~~Q~~ai~~~l~---g~d~iv~a~TGsGKTl~~ 205 (679)
+.-+.+-+-.++. ..+.++++|+|.|||.++
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIA 217 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHH
Confidence 3334444444443 358999999999999765
No 455
>PRK06321 replicative DNA helicase; Provisional
Probab=87.65 E-value=4.5 Score=44.24 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=71.6
Q ss_pred HHHHHHcC----CCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHh--cCCceEEEcCCCCcH
Q 005742 181 ALSAWLAH----HDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDN 250 (679)
Q Consensus 181 ai~~~l~g----~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~--~~~~~~~~~~~~~~~ 250 (679)
.+..+..| .=++|.|.+|.|||.-++-.+. ..+..++|.+.-- =..|...++-. .++....+..+....
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM-s~~ql~~Rlla~~s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM-TVDQLIHRIICSRSEVESKKISVGDLSG 293 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC-CHHHHHHHHHHhhcCCCHHHhhcCCCCH
Confidence 44555543 3357788999999964442222 2466777775321 14455555433 133322222232222
Q ss_pred HHHH------HHHcCCccEEEE-ChH-HHHHHHHHHHHHHhhcCceEEEeecccccccCCC-----CchHHHHHHHHHHH
Q 005742 251 KVEQ------KALRGMYSIIYV-CPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH-----DFRPDYRRLSVLRE 317 (679)
Q Consensus 251 ~~~~------~~~~~~~~Ili~-Tp~-~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~-----~f~~~~~~l~~~~~ 317 (679)
..+. ..+.. ..+.|- +|. .+..+....+......++++||||=.+.+...+. .-...+..+.+-++
T Consensus 294 ~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK 372 (472)
T PRK06321 294 RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLK 372 (472)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHH
Confidence 2222 12222 345553 222 1222222223333345799999999998853221 11123333333333
Q ss_pred hhccccccccCCCCCEEEEEccC
Q 005742 318 NFGANNLKSLKFDIPLMALTATA 340 (679)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~lSAT~ 340 (679)
.+..+ .+++++++|--.
T Consensus 373 ~lAke------l~vpVi~lsQLn 389 (472)
T PRK06321 373 NLARE------LNIPILCLSQLS 389 (472)
T ss_pred HHHHH------hCCcEEEEeecC
Confidence 22211 167888888653
No 456
>PRK07004 replicative DNA helicase; Provisional
Probab=87.64 E-value=5.2 Score=43.68 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=67.1
Q ss_pred CCCEEEEeecCCcchhhhhhhh----hccCCeEEEEcCchHHHHHHHHHHHh-c-CCceEEEcCCCCcHHHHH------H
Q 005742 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSK-H-GVTACFLGSGQPDNKVEQ------K 255 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~----l~~~~~vLvl~Pt~~L~~q~~~~l~~-~-~~~~~~~~~~~~~~~~~~------~ 255 (679)
|.=+++.|.+|.|||..++-.+ +..+..++|++.- .=..|...++-. . ++....+..|......+. .
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4457888999999997544222 2346777777532 124455444422 1 222222222332222221 1
Q ss_pred HHcCCccEEEE-----ChHHHHHHHHHHHHHHh-hcCceEEEeecccccccCCC--CchHHHHHHHHHHHhhcccccccc
Q 005742 256 ALRGMYSIIYV-----CPETVIRLIKPLQRLAE-SRGIALFAIDEVHCVSKWGH--DFRPDYRRLSVLRENFGANNLKSL 327 (679)
Q Consensus 256 ~~~~~~~Ili~-----Tp~~l~~ll~~~~~~~~-~~~~~lvViDEaH~l~~~g~--~f~~~~~~l~~~~~~~~~~~~~~~ 327 (679)
.+.. ..+.|. |+..+..... .... ...+++||||=.+.+...+. .-...+..|.+-++.+..+
T Consensus 292 ~l~~-~~l~I~d~~~~~~~~i~~~~r---~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke----- 362 (460)
T PRK07004 292 KMSE-AQLFIDETGGLNPMELRSRAR---RLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE----- 362 (460)
T ss_pred HHhc-CCEEEECCCCCCHHHHHHHHH---HHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH-----
Confidence 2222 345553 3333332222 2222 23589999999998863221 1122333333333322211
Q ss_pred CCCCCEEEEEc
Q 005742 328 KFDIPLMALTA 338 (679)
Q Consensus 328 ~~~~~~l~lSA 338 (679)
.+++++++|-
T Consensus 363 -l~ipVi~lsQ 372 (460)
T PRK07004 363 -LDVPVIALSQ 372 (460)
T ss_pred -hCCeEEEEec
Confidence 1678888874
No 457
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.61 E-value=2.8 Score=37.75 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=22.9
Q ss_pred EEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHH
Q 005742 191 CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q 228 (679)
.|+.+|.|+|||..|......-.+ .++++.+-+++.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 478899999999877654433223 4444554455443
No 458
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.57 E-value=0.52 Score=50.51 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHcCCC--EEEEeecCCcchhh
Q 005742 174 LKNFQKEALSAWLAHHD--CLVLAATGSGKSLC 204 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~g~d--~iv~a~TGsGKTl~ 204 (679)
+.+.|.+.+..+++... ++|.+|||||||.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 47899999988886544 57889999999964
No 459
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.37 E-value=4.8 Score=41.70 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.9
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.++..+|.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 57999999999999744
No 460
>PRK09165 replicative DNA helicase; Provisional
Probab=87.32 E-value=5.9 Score=43.76 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=55.2
Q ss_pred CCEEEEeecCCcchhhhhhhhh----c--------------cCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCC
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL----L--------------TGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQP 248 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l----~--------------~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~ 248 (679)
.=+++.|.||.|||..++-.+. . .+..++|++.- .=..|...++... ++....+..+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3468889999999965432221 1 25677777543 2256666665432 333222333332
Q ss_pred cHHHHHHHHc-----CCccEEEE-----ChHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 249 DNKVEQKALR-----GMYSIIYV-----CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 249 ~~~~~~~~~~-----~~~~Ili~-----Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
....+.+... ....+.|- |++.+...+. .......+++||||=.|.+..
T Consensus 297 ~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir---~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 297 SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARAR---RLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHH---HHHHhcCCCEEEEcchHhccC
Confidence 2222211111 12234443 3333333232 233345699999999998853
No 461
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.19 E-value=3.6 Score=48.56 Aligned_cols=28 Identities=11% Similarity=0.358 Sum_probs=20.2
Q ss_pred HHHHHHHHH----c--CCCEEEEeecCCcchhhh
Q 005742 178 QKEALSAWL----A--HHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 178 Q~~ai~~~l----~--g~d~iv~a~TGsGKTl~~ 205 (679)
|..-+..++ + ..+.++++|.|+|||.+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555544 2 248999999999999654
No 462
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.12 E-value=3.1 Score=49.38 Aligned_cols=37 Identities=5% Similarity=0.069 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhhHHH
Q 005742 4 SGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEY 42 (679)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (679)
..+...|+..-|++.+= ..+.+++..+|.+.+.+.+-
T Consensus 22 ~~V~~EHLLlaLl~~~~--g~a~~iL~~~Gvd~~~l~~~ 58 (852)
T TIGR03346 22 QQIEPEHLLKALLDQEG--GLARRLLQKAGVNVGALRQA 58 (852)
T ss_pred CcccHHHHHHHHHhCCc--cHHHHHHHHcCCCHHHHHHH
Confidence 45677888888877532 35667788888876554333
No 463
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.04 E-value=1.2 Score=47.81 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=56.8
Q ss_pred cEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccccCc----cccc
Q 005742 514 LTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMGI----DKLN 580 (679)
Q Consensus 514 ~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~Gi----Dip~ 580 (679)
-.|||++||+-+..+.+.|.. .++.+..+.|||....++++++. ...|+|||. ++.++= ++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 389999999999999998875 58999999999999999999976 668999996 333332 3556
Q ss_pred ccEEEEeCC
Q 005742 581 VRRIIHYGW 589 (679)
Q Consensus 581 v~~VI~~d~ 589 (679)
+.+.|.-..
T Consensus 341 vkcLVlDEa 349 (731)
T KOG0347|consen 341 VKCLVLDEA 349 (731)
T ss_pred ceEEEEccH
Confidence 777664443
No 464
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.98 E-value=1.6 Score=45.24 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=16.3
Q ss_pred CCC-EEEEeecCCcchhhhhhh
Q 005742 188 HHD-CLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 188 g~d-~iv~a~TGsGKTl~~~lp 208 (679)
..+ .++.+|.|+|||.++...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~l 44 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALAL 44 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHH
Confidence 345 899999999999765443
No 465
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.97 E-value=4.6 Score=45.51 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.6
Q ss_pred EEEEeecCCcchhhhhhh
Q 005742 191 CLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 191 ~iv~a~TGsGKTl~~~lp 208 (679)
.|+.+|.|+|||.++.+.
T Consensus 41 yLf~Gp~G~GKtt~A~~l 58 (576)
T PRK14965 41 FLFTGARGVGKTSTARIL 58 (576)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999766443
No 466
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.94 E-value=2.6 Score=47.57 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.8
Q ss_pred CEEEEeecCCcchhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~l 207 (679)
-+++.+|+|+|||.++-+
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 388999999999986543
No 467
>PRK08760 replicative DNA helicase; Provisional
Probab=86.93 E-value=4.1 Score=44.64 Aligned_cols=106 Identities=22% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCEEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHhc--CCceEEEcCCCCcHHHHH------HH
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQ------KA 256 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~------~~ 256 (679)
.=++|.|.+|.|||...+-.+. ..+..|+|.+.-- =..|+..++... ++....+..+......+. ..
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~ 308 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM-SASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKM 308 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC-CHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4467888999999975543222 2466777776532 245666665443 222222222322222111 11
Q ss_pred HcCCccEEEE-----ChHHHHHHHHHHHHHHhhcCceEEEeecccccc
Q 005742 257 LRGMYSIIYV-----CPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (679)
Q Consensus 257 ~~~~~~Ili~-----Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~ 299 (679)
+.. ..+.|- |++.+...+ +......++++||||=.+.+.
T Consensus 309 l~~-~~l~I~d~~~~t~~~I~~~~---r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 309 LKE-TKIFIDDTPGVSPEVLRSKC---RRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred Hhc-CCEEEeCCCCCCHHHHHHHH---HHHHHhcCCCEEEEecHHhcC
Confidence 222 344443 334343322 233334579999999999885
No 468
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=86.91 E-value=1.9 Score=46.20 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=67.0
Q ss_pred CEEEEeecCCcchhhhhhhhh----c--cCCeEEEEcCchH-HHH----HHHHHHHhcCCceEEEcCCCCcHHHHHHHHc
Q 005742 190 DCLVLAATGSGKSLCFQIPAL----L--TGKVVVVISPLIS-LMH----DQCSKLSKHGVTACFLGSGQPDNKVEQKALR 258 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp~l----~--~~~~vLvl~Pt~~-L~~----q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (679)
-.++.+..|||||.+..+-++ . ++.+++++.|+.. |.. +....+..+++....-....+.. .....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~---i~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME---IKILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE---EEecC
Confidence 357889999999976554333 3 6789999999976 433 33334444555422221111100 00011
Q ss_pred CCccEEEECh-HHHHHHHHHHHHHHhhcCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEE
Q 005742 259 GMYSIIYVCP-ETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337 (679)
Q Consensus 259 ~~~~Ili~Tp-~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lS 337 (679)
.+..|++..- +.. .+......++++.+|||..+.. ..+..+...++. +...+.+.+|
T Consensus 80 ~g~~i~f~g~~d~~-------~~ik~~~~~~~~~idEa~~~~~------~~~~~l~~rlr~---------~~~~~~i~~t 137 (396)
T TIGR01547 80 TGKKFIFKGLNDKP-------NKLKSGAGIAIIWFEEASQLTF------EDIKELIPRLRE---------TGGKKFIIFS 137 (396)
T ss_pred CCeEEEeecccCCh-------hHhhCcceeeeehhhhhhhcCH------HHHHHHHHHhhc---------cCCccEEEEE
Confidence 1334555433 211 2222334479999999998853 233333211111 0122358999
Q ss_pred ccCCh
Q 005742 338 ATATI 342 (679)
Q Consensus 338 AT~~~ 342 (679)
.+|..
T Consensus 138 ~NP~~ 142 (396)
T TIGR01547 138 SNPES 142 (396)
T ss_pred cCcCC
Confidence 99965
No 469
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.72 E-value=1.3 Score=45.97 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhCCChhhhHHHHhcCccc
Q 005742 10 EVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (679)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (679)
.-+++|+-|||+--++..|+++.|-+.+.|.+++...-.+
T Consensus 431 ~~la~Lv~mGF~e~~A~~ALe~~gnn~~~a~~~L~~s~~n 470 (568)
T KOG2561|consen 431 ISLAELVSMGFEEGKARSALEAGGNNEDTAQRLLSASVAN 470 (568)
T ss_pred hhHHHHHHhccccchHHHHHHhcCCcHHHHHHHHHHhCCC
Confidence 3589999999999999999999999999999999775433
No 470
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.67 E-value=0.77 Score=51.20 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHc--------C-CC-EEEEeecCCcchhhhhhhhh----ccCCeEEEEcCchHHHHHHHHHHHhc-
Q 005742 172 SSLKNFQKEALSAWLA--------H-HD-CLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKH- 236 (679)
Q Consensus 172 ~~~~~~Q~~ai~~~l~--------g-~d-~iv~a~TGsGKTl~~~lp~l----~~~~~vLvl~Pt~~L~~q~~~~l~~~- 236 (679)
..+...|.+|+--+-+ | +- .++-...|-||-.+..-.|+ .-.+++|+++-+..|-.+..+.|+..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~Dig 342 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIG 342 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcC
Confidence 3577889998865432 2 22 34444556666533222222 34689999999999977777777765
Q ss_pred --CCceEEEcCCCCc--HHHHHHHHcCCccEEEEChHHHHHHHH--------HHHH---HHhhcCceEEEeecccccccC
Q 005742 237 --GVTACFLGSGQPD--NKVEQKALRGMYSIIYVCPETVIRLIK--------PLQR---LAESRGIALFAIDEVHCVSKW 301 (679)
Q Consensus 237 --~~~~~~~~~~~~~--~~~~~~~~~~~~~Ili~Tp~~l~~ll~--------~~~~---~~~~~~~~lvViDEaH~l~~~ 301 (679)
+|.+..++--... ...+.. .-.-.|+++|+-.|+.-.. .++. ++--.-=.+||+||||+..+.
T Consensus 343 A~~I~V~alnK~KYakIss~en~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL 420 (1300)
T KOG1513|consen 343 ATGIAVHALNKFKYAKISSKENT--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNL 420 (1300)
T ss_pred CCCccceehhhcccccccccccC--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhccc
Confidence 3444333211000 000000 1123699999987763111 1111 111122368999999998541
Q ss_pred ----CCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 302 ----GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 302 ----g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
+..--..-+.+..+.+.+ |+.+++.-|||-..
T Consensus 421 ~p~~~~k~TKtG~tVLdLQk~L---------P~ARVVYASATGAs 456 (1300)
T KOG1513|consen 421 VPTAGAKSTKTGKTVLDLQKKL---------PNARVVYASATGAS 456 (1300)
T ss_pred ccccCCCcCcccHhHHHHHHhC---------CCceEEEeeccCCC
Confidence 100112223333444443 37889999999543
No 471
>CHL00176 ftsH cell division protein; Validated
Probab=86.53 E-value=1.4 Score=49.87 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=15.0
Q ss_pred CCEEEEeecCCcchhhh
Q 005742 189 HDCLVLAATGSGKSLCF 205 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~ 205 (679)
+.+++.+|+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999765
No 472
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=2.9 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.6
Q ss_pred CCEEEEeecCCcchhhhhhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQIPAL 210 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~l 210 (679)
+-+|+.+|.|+|||+.+-..+.
T Consensus 277 ~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHh
Confidence 4689999999999987755544
No 473
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=86.31 E-value=3.8 Score=42.09 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCEEEEeecCCcchhhhhhhhh---ccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEE
Q 005742 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l---~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 264 (679)
|+-+-+.+|.|+|||..++-.+. ..+..+++|-|-..|-..+.+.+ |+. .-+++
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l---Gvd--------------------l~rll 109 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL---GVD--------------------LDRLL 109 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT---T----------------------GGGEE
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc---Ccc--------------------ccceE
Confidence 45567899999999976543322 25677777777666644433332 322 12567
Q ss_pred EEChHHHHHHHHHHHHHHhhcCceEEEeeccccc
Q 005742 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (679)
Q Consensus 265 i~Tp~~l~~ll~~~~~~~~~~~~~lvViDEaH~l 298 (679)
|+.|+.-...+......+....+++||+|=+-.+
T Consensus 110 v~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 110 VVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred EecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 7767655444444445555667899999987766
No 474
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=1.4 Score=43.64 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeecCCcchhhh
Q 005742 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (679)
Q Consensus 170 g~~~~~~~Q~~ai~~~l~g~d~iv~a~TGsGKTl~~ 205 (679)
..++|--|+...|. .-+.+|+.++.|+|||+.+
T Consensus 204 PLthPE~YeemGik---pPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 204 PLTHPEYYEEMGIK---PPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred CCCCHHHHHHcCCC---CCCeeEEeCCCCCchhHHH
Confidence 44555566655442 2478999999999999865
No 475
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=86.31 E-value=2.1 Score=48.80 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=56.8
Q ss_pred hccCCCCCCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc
Q 005742 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM 574 (679)
Q Consensus 505 ~l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~ 574 (679)
.+.......++||.|||+.-+..+++.+... ++.+..+||+.+.+.+...+ .....|+|+|. .+.+
T Consensus 67 ~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r 142 (629)
T PRK11634 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKR 142 (629)
T ss_pred HhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHc
Confidence 3333333458999999999999998877652 78889999998776554443 24578999994 3333
Q ss_pred -CcccccccEEEEeC
Q 005742 575 -GIDKLNVRRIIHYG 588 (679)
Q Consensus 575 -GiDip~v~~VI~~d 588 (679)
.+++.++.+||.=.
T Consensus 143 ~~l~l~~l~~lVlDE 157 (629)
T PRK11634 143 GTLDLSKLSGLVLDE 157 (629)
T ss_pred CCcchhhceEEEecc
Confidence 37888888888433
No 476
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=86.28 E-value=3.6 Score=41.29 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCEEEEeecCCcchhhhhhhh---hccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEE
Q 005742 189 HDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIY 265 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~lp~---l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 265 (679)
+-+=+.+|-|||||..++-.+ ...+++++||---.+|=.+-...+.... .-.+++
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~----------------------~d~l~v 118 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL----------------------LDNLLV 118 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh----------------------hcceeE
Confidence 345589999999996544322 2345555555444333221111111100 246788
Q ss_pred EChHHHHHHHHHHHHHHhhcC--ceEEEeeccccc
Q 005742 266 VCPETVIRLIKPLQRLAESRG--IALFAIDEVHCV 298 (679)
Q Consensus 266 ~Tp~~l~~ll~~~~~~~~~~~--~~lvViDEaH~l 298 (679)
..|.....-+........... +++||||=+=.+
T Consensus 119 ~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 119 SQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred ecCCCHHHHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 888777655554455555555 999999966544
No 477
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.12 E-value=0.25 Score=48.54 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=12.5
Q ss_pred cCceEEEeecccccc
Q 005742 285 RGIALFAIDEVHCVS 299 (679)
Q Consensus 285 ~~~~lvViDEaH~l~ 299 (679)
...+++||||+..+.
T Consensus 61 ~~~~~liiDE~~~~~ 75 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLP 75 (234)
T ss_pred CcCCEEEEeccccCC
Confidence 358999999999874
No 478
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=86.09 E-value=1.7 Score=47.20 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHc------C----CCEEEEeecCCcchhhhh-hhh------hccCCeEEEEcCchHHHHHHHHHHHh
Q 005742 173 SLKNFQKEALSAWLA------H----HDCLVLAATGSGKSLCFQ-IPA------LLTGKVVVVISPLISLMHDQCSKLSK 235 (679)
Q Consensus 173 ~~~~~Q~~ai~~~l~------g----~d~iv~a~TGsGKTl~~~-lp~------l~~~~~vLvl~Pt~~L~~q~~~~l~~ 235 (679)
.+-|||.-++-.++- + +..++..|-+-|||..+. +.. -..+..+.|++|+.+-+.+.+...+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 578999999988871 1 357899999999995332 211 13678999999998888887776665
No 479
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.04 E-value=3.2 Score=40.35 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.2
Q ss_pred CCCEEEEeecCCcchhh
Q 005742 188 HHDCLVLAATGSGKSLC 204 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~ 204 (679)
+..++|.+|.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 35788999999999963
No 480
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.97 E-value=3.4 Score=39.40 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----cccc-Cccccc
Q 005742 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GIDKLN 580 (679)
Q Consensus 511 ~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~~-GiDip~ 580 (679)
...++||.++++..+...++.+... ++.+..++|+.+..+...... +...|+|+|. .+.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3568999999999988887776553 678889999988765543332 6778999994 2222 256778
Q ss_pred ccEEEEeCC
Q 005742 581 VRRIIHYGW 589 (679)
Q Consensus 581 v~~VI~~d~ 589 (679)
++++|.=+.
T Consensus 144 l~~lIvDE~ 152 (203)
T cd00268 144 VKYLVLDEA 152 (203)
T ss_pred CCEEEEeCh
Confidence 888875443
No 481
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.84 E-value=4.5 Score=46.25 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=33.1
Q ss_pred cCceEEEeecccccccCCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCCh
Q 005742 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 342 (679)
.+--++|+|.-|++.+-- ....++.+ +++.|++...++.|-+-++
T Consensus 128 ~~pl~LVlDDyHli~~~~--l~~~l~fL-----------l~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPA--LHEALRFL-----------LKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCccc--HHHHHHHH-----------HHhCCCCeEEEEEeccCCC
Confidence 345699999999997532 45555665 6777778888888877655
No 482
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.78 E-value=3.3 Score=44.21 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=16.7
Q ss_pred CCCEEEEeecCCcchhhhhh
Q 005742 188 HHDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~l 207 (679)
.+.+++.+|+|+|||+.+-.
T Consensus 179 pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986533
No 483
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.77 E-value=2.1 Score=46.91 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=56.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEec-----ccc-cCccccc
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFG-MGIDKLN 580 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~-----~~~-~GiDip~ 580 (679)
..++||.++|++-+..+++.++.. ++.+..++|+.+...+...++ +..+|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347999999999999999877753 678889999998876654443 5678999993 333 3578889
Q ss_pred ccEEEEeCC
Q 005742 581 VRRIIHYGW 589 (679)
Q Consensus 581 v~~VI~~d~ 589 (679)
+++||.-+.
T Consensus 148 l~~lViDEa 156 (460)
T PRK11776 148 LNTLVLDEA 156 (460)
T ss_pred CCEEEEECH
Confidence 999885443
No 484
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=85.50 E-value=2.5 Score=47.25 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=51.3
Q ss_pred CCCEEEEeecCCcchhhhhhhhhccCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHHHHHHcCCccEEEEC
Q 005742 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267 (679)
Q Consensus 188 g~d~iv~a~TGsGKTl~~~lp~l~~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 267 (679)
|--+++++|+|.||| +|+.-+++.+.+.-++ +..||..+... +++.-+-.|+.
T Consensus 350 GpILcLVGPPGVGKT---------------------SLgkSIA~al~RkfvR--~sLGGvrDEAE----IRGHRRTYIGa 402 (782)
T COG0466 350 GPILCLVGPPGVGKT---------------------SLGKSIAKALGRKFVR--ISLGGVRDEAE----IRGHRRTYIGA 402 (782)
T ss_pred CcEEEEECCCCCCch---------------------hHHHHHHHHhCCCEEE--EecCccccHHH----hcccccccccc
Confidence 445788999999999 6778888888774333 33345544332 33333444444
Q ss_pred -hHHHHHHHHHHHHHHhhcCceEEEeeccccccc
Q 005742 268 -PETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (679)
Q Consensus 268 -p~~l~~ll~~~~~~~~~~~~~lvViDEaH~l~~ 300 (679)
|+++..-+... -..--++++||.|.|..
T Consensus 403 mPGrIiQ~mkka-----~~~NPv~LLDEIDKm~s 431 (782)
T COG0466 403 MPGKIIQGMKKA-----GVKNPVFLLDEIDKMGS 431 (782)
T ss_pred CChHHHHHHHHh-----CCcCCeEEeechhhccC
Confidence 89887644421 11235899999999954
No 485
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.44 E-value=5.8 Score=41.26 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=14.2
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
....+++||||+|++..
T Consensus 108 ~~~~kvviI~~a~~~~~ 124 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA 124 (329)
T ss_pred ccCceEEEeehHhhhCH
Confidence 45689999999999963
No 486
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.35 E-value=6.6 Score=46.56 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHcCCCchHHHHHHHHhCCChhhh
Q 005742 4 SGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDA 39 (679)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (679)
.-+...|+...|++.+- ..+.+.++.+|-+.+.+
T Consensus 27 ~~~~~~hll~~l~~~~~--~~~~~~l~~~~~~~~~l 60 (857)
T PRK10865 27 QFIEPLHLMSALLNQEG--GSVRPLLTSAGINAGQL 60 (857)
T ss_pred CcccHHHHHHHHHhCCc--cHHHHHHHHcCCCHHHH
Confidence 34677888888877532 35667778888775444
No 487
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.34 E-value=7.5 Score=43.55 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.3
Q ss_pred CEEEEeecCCcchhhhhhh
Q 005742 190 DCLVLAATGSGKSLCFQIP 208 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~~lp 208 (679)
-.|+.+|.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999876543
No 488
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.22 E-value=0.5 Score=51.45 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.6
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
..+.+..||||+|.++.
T Consensus 117 ~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK 133 (515)
T ss_pred cccceEEEEecHHhhhH
Confidence 46789999999999974
No 489
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.16 E-value=1.3 Score=46.12 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHc-CCCEEEEeecCCcchhhh--hhhhhccCCeEEEEcCchHH
Q 005742 174 LKNFQKEALSAWLA-HHDCLVLAATGSGKSLCF--QIPALLTGKVVVVISPLISL 225 (679)
Q Consensus 174 ~~~~Q~~ai~~~l~-g~d~iv~a~TGsGKTl~~--~lp~l~~~~~vLvl~Pt~~L 225 (679)
+.+.+.+.+..+.+ +.+++++++||+|||... ++-.+....+++++-.+.+|
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 66788888777665 569999999999999633 22223355677777777776
No 490
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.13 E-value=5.1 Score=44.30 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=14.2
Q ss_pred hcCceEEEeeccccccc
Q 005742 284 SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 284 ~~~~~lvViDEaH~l~~ 300 (679)
..+.+++||||||++..
T Consensus 115 ~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK 131 (535)
T ss_pred cCCeEEEEEECcccCCH
Confidence 35789999999999963
No 491
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.06 E-value=8.6 Score=40.72 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=13.8
Q ss_pred CEEEEeecCCcchhhh
Q 005742 190 DCLVLAATGSGKSLCF 205 (679)
Q Consensus 190 d~iv~a~TGsGKTl~~ 205 (679)
..++++|.|+|||..+
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 492
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.92 E-value=3.2 Score=48.40 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.6
Q ss_pred CCEEEEeecCCcchhhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQI 207 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~l 207 (679)
+.+++.+|+|+|||+.+-.
T Consensus 488 ~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999986533
No 493
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.83 E-value=2.8 Score=45.53 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=68.2
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEe-----cccccC-cccccc
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT-----IAFGMG-IDKLNV 581 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT-----~~~~~G-iDip~v 581 (679)
..++||-++||+-+..+.+.+.+. +++..+++|+.+...+..-+ + ..+.|+||| +.+++| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l---~-~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL---E-RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH---h-cCCcEEEeCChHHHHHHHcCCccccce
Confidence 346999999999999999888763 45688999999877665554 2 347899999 466666 788889
Q ss_pred cEEEE--------eCCCCCHHHHHHHhhcccc
Q 005742 582 RRIIH--------YGWPQSLEAYYQEAGRAGR 605 (679)
Q Consensus 582 ~~VI~--------~d~p~s~~~y~Qr~GRagR 605 (679)
.++|. .++-..+...++.++|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 98884 3344456778888888877
No 494
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.75 E-value=5.9 Score=37.39 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=46.1
Q ss_pred cCCCEEEEeecCCcchhhhh-hhh-h-c----------cCCeEEEEcCchHHHHHHHHHHHhcCCceEEEcCCCCcHHHH
Q 005742 187 AHHDCLVLAATGSGKSLCFQ-IPA-L-L----------TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE 253 (679)
Q Consensus 187 ~g~d~iv~a~TGsGKTl~~~-lp~-l-~----------~~~~vLvl~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (679)
+|.-+++.+|+|+|||...+ +.+ + . .+.+||++..--. ..++.+++....... .. ...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~-~~~ 101 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DD-DAN 101 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------H-HHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CC-ccc
Confidence 35568999999999996433 211 1 1 3568888876544 556666666532111 11 111
Q ss_pred HHHHc--CCccEEEEChHH----HHHHHHHHHHHHhh-cCceEEEeecccccccC
Q 005742 254 QKALR--GMYSIIYVCPET----VIRLIKPLQRLAES-RGIALFAIDEVHCVSKW 301 (679)
Q Consensus 254 ~~~~~--~~~~Ili~Tp~~----l~~ll~~~~~~~~~-~~~~lvViDEaH~l~~~ 301 (679)
...+. ..-.+-+.++.. +...++.+...+.. .++++||||=...+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 102 LFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 11111 001222222111 11122223333333 56999999999988654
No 495
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.64 E-value=10 Score=37.08 Aligned_cols=18 Identities=33% Similarity=0.768 Sum_probs=16.0
Q ss_pred CCEEEEeecCCcchhhhh
Q 005742 189 HDCLVLAATGSGKSLCFQ 206 (679)
Q Consensus 189 ~d~iv~a~TGsGKTl~~~ 206 (679)
+.+++.+|.|+|||+++-
T Consensus 212 kgvllygppgtgktl~ar 229 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCAR 229 (435)
T ss_pred CceEEeCCCCCchhHHHH
Confidence 679999999999999863
No 496
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.61 E-value=3.1 Score=44.36 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=61.5
Q ss_pred CCCCcEEEEeCchhHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-------cccCccc
Q 005742 510 LEDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-------FGMGIDK 578 (679)
Q Consensus 510 ~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-------~~~GiDi 578 (679)
.+..|+||.||||+-+-.+....++ ..+.++..-||++-+.++.++. ...+|+|||.- -+.++|+
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~l 325 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNL 325 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCccc
Confidence 3456999999999987777765554 3688999999999999988884 45689999962 3567778
Q ss_pred ccccEEEEeCCCCCHHH
Q 005742 579 LNVRRIIHYGWPQSLEA 595 (679)
Q Consensus 579 p~v~~VI~~d~p~s~~~ 595 (679)
.++.+.|.-....-+++
T Consensus 326 dsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 326 DSIEVLVLDEADRMLEE 342 (691)
T ss_pred cceeEEEechHHHHHHH
Confidence 88888776555444433
No 497
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.59 E-value=4.1 Score=36.87 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.2
Q ss_pred cCceEEEeecccccccCCCCchHHHHHH
Q 005742 285 RGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~~g~~f~~~~~~l 312 (679)
..-+++||||.--|--....|...+..+
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~v 126 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEV 126 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHH
Confidence 3469999999998843333366666665
No 498
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.58 E-value=2.8 Score=46.14 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=63.5
Q ss_pred CCcEEEEeCchhHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHhCCCeeEEEEecc-cccC------c-ccccccE
Q 005742 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMG------I-DKLNVRR 583 (679)
Q Consensus 512 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~~~hg~~~~~~R~~v~~~F~~g~~~vLVaT~~-~~~G------i-Dip~v~~ 583 (679)
.+.+||.+|++.-+....+.|...|+.+..++++.+..++..++.....|+.+|+++|.- +... + ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 568999999999999999999999999999999999999999999999999999999963 2222 2 3456677
Q ss_pred EEEeC
Q 005742 584 IIHYG 588 (679)
Q Consensus 584 VI~~d 588 (679)
||.-.
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 76433
No 499
>PHA00012 I assembly protein
Probab=84.47 E-value=5.8 Score=40.41 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=27.1
Q ss_pred cCceEEEeeccccccc---CCCCchHHHHHHHHHHHhhccccccccCCCCCEEEEEccCC
Q 005742 285 RGIALFAIDEVHCVSK---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (679)
Q Consensus 285 ~~~~lvViDEaH~l~~---~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 341 (679)
..-.++|+||||.... |+..-...+.......+.. ..-++++|-.+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~----------G~DvilITQ~ps 129 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKL----------GWDIIFIIQDIS 129 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccC----------CceEEEEcCCHH
Confidence 4678999999999964 4533333333322222211 455777776664
No 500
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=84.39 E-value=1 Score=42.11 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=26.7
Q ss_pred cCCccEEEEChHHHHHHHHHHHHHHh--hcCceEEEeeccccccc
Q 005742 258 RGMYSIIYVCPETVIRLIKPLQRLAE--SRGIALFAIDEVHCVSK 300 (679)
Q Consensus 258 ~~~~~Ili~Tp~~l~~ll~~~~~~~~--~~~~~lvViDEaH~l~~ 300 (679)
...++|||+++.-+.+-.. ..... ..+-.+|||||||.+.+
T Consensus 117 ~~~adivi~~y~yl~~~~~--~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSI--RKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHH--HHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHH--HhhhccccccCcEEEEecccchHH
Confidence 3457999999998775322 22221 23457999999999865
Done!