Query 005743
Match_columns 679
No_of_seqs 217 out of 219
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 13:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 99.2 1.3E-11 2.9E-16 140.0 7.8 38 275-315 347-384 (1102)
2 KOG1924 RhoA GTPase effector D 98.3 8.9E-07 1.9E-11 101.8 5.9 33 643-676 905-937 (1102)
3 PF09726 Macoilin: Transmembra 97.5 0.005 1.1E-07 72.2 19.1 127 122-248 422-579 (697)
4 PRK11637 AmiB activator; Provi 97.2 0.036 7.8E-07 61.0 20.9 73 122-194 44-121 (428)
5 PF14662 CCDC155: Coiled-coil 97.2 0.014 3E-07 59.0 15.7 122 123-247 65-191 (193)
6 PHA02562 46 endonuclease subun 96.9 0.11 2.4E-06 58.0 21.3 48 265-314 348-397 (562)
7 PF04849 HAP1_N: HAP1 N-termin 96.8 0.059 1.3E-06 57.9 17.1 143 120-277 155-306 (306)
8 KOG1925 Rac1 GTPase effector F 96.7 0.00089 1.9E-08 75.1 2.4 28 470-500 228-255 (817)
9 TIGR02168 SMC_prok_B chromosom 96.6 0.26 5.6E-06 58.8 22.6 26 123-148 710-735 (1179)
10 TIGR02168 SMC_prok_B chromosom 96.6 0.33 7.2E-06 57.9 23.3 27 122-148 688-714 (1179)
11 PF00038 Filament: Intermediat 96.6 0.44 9.5E-06 49.8 21.6 41 262-302 263-304 (312)
12 COG1196 Smc Chromosome segrega 96.6 0.24 5.3E-06 61.2 22.5 88 213-300 375-464 (1163)
13 PF09726 Macoilin: Transmembra 96.6 0.11 2.3E-06 61.4 18.6 163 129-299 457-649 (697)
14 KOG4643 Uncharacterized coiled 96.6 0.065 1.4E-06 64.6 16.7 151 129-287 174-327 (1195)
15 PHA02562 46 endonuclease subun 96.6 0.2 4.4E-06 56.0 20.0 21 122-142 178-198 (562)
16 TIGR02169 SMC_prok_A chromosom 96.6 0.32 7E-06 58.4 22.7 27 124-150 250-276 (1164)
17 TIGR02169 SMC_prok_A chromosom 96.5 0.41 8.9E-06 57.5 23.5 30 121-150 254-283 (1164)
18 PF07888 CALCOCO1: Calcium bin 96.5 0.27 5.8E-06 56.7 20.3 41 275-315 304-344 (546)
19 KOG1923 Rac1 GTPase effector F 96.5 0.0026 5.5E-08 74.3 4.3 37 614-653 503-542 (830)
20 PF11365 DUF3166: Protein of u 96.3 0.014 2.9E-07 53.4 7.2 82 157-238 3-93 (96)
21 PF13851 GAS: Growth-arrest sp 96.1 0.79 1.7E-05 46.5 19.5 111 122-248 24-134 (201)
22 PF05557 MAD: Mitotic checkpoi 96.1 0.0085 1.8E-07 70.1 6.4 169 123-291 362-589 (722)
23 KOG2675 Adenylate cyclase-asso 96.1 0.0074 1.6E-07 67.0 5.0 15 525-539 262-276 (480)
24 PRK02224 chromosome segregatio 96.0 0.67 1.4E-05 55.1 21.4 80 214-293 599-678 (880)
25 PRK02224 chromosome segregatio 96.0 0.52 1.1E-05 56.0 20.2 7 658-664 816-822 (880)
26 COG1579 Zn-ribbon protein, pos 95.9 1.3 2.7E-05 46.6 20.2 130 162-299 45-180 (239)
27 COG4942 Membrane-bound metallo 95.9 1.1 2.5E-05 50.2 21.0 158 123-299 43-230 (420)
28 PRK03918 chromosome segregatio 95.9 0.66 1.4E-05 54.9 20.2 79 122-200 159-238 (880)
29 KOG0161 Myosin class II heavy 95.8 1.1 2.3E-05 58.4 22.5 30 122-151 905-934 (1930)
30 KOG0980 Actin-binding protein 95.8 1.2 2.7E-05 53.6 21.5 99 211-314 463-561 (980)
31 PF07888 CALCOCO1: Calcium bin 95.8 0.69 1.5E-05 53.4 19.1 33 157-189 173-205 (546)
32 KOG0612 Rho-associated, coiled 95.7 0.6 1.3E-05 57.7 19.4 85 214-298 574-660 (1317)
33 TIGR01843 type_I_hlyD type I s 95.6 1.5 3.2E-05 46.9 20.1 28 122-149 78-105 (423)
34 KOG0977 Nuclear envelope prote 95.6 0.49 1.1E-05 54.5 17.3 72 122-193 89-179 (546)
35 TIGR00606 rad50 rad50. This fa 95.6 0.58 1.3E-05 58.6 19.3 99 157-255 824-929 (1311)
36 PRK11637 AmiB activator; Provi 95.5 2.9 6.2E-05 46.3 22.3 79 121-199 50-133 (428)
37 COG1196 Smc Chromosome segrega 95.5 1.6 3.5E-05 54.2 22.3 37 264-300 873-909 (1163)
38 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 0.98 2.1E-05 42.6 16.0 115 123-246 8-130 (132)
39 PRK03918 chromosome segregatio 95.4 1.2 2.5E-05 52.9 20.2 71 129-199 159-230 (880)
40 TIGR00606 rad50 rad50. This fa 95.4 1.4 2.9E-05 55.5 21.7 36 216-251 972-1007(1311)
41 KOG0161 Myosin class II heavy 95.4 1.3 2.9E-05 57.5 21.7 38 214-251 1083-1120(1930)
42 PLN03188 kinesin-12 family pro 95.4 0.71 1.5E-05 57.4 18.5 79 220-300 1172-1250(1320)
43 PF01213 CAP_N: Adenylate cycl 95.4 0.0044 9.4E-08 66.5 0.2 15 524-538 259-273 (312)
44 PRK15319 AIDA autotransporter- 95.3 0.013 2.8E-07 73.9 3.9 11 530-540 1745-1755(2039)
45 KOG0977 Nuclear envelope prote 95.3 1.3 2.7E-05 51.4 19.1 124 124-247 41-195 (546)
46 PHA01732 proline-rich protein 95.3 0.039 8.6E-07 49.7 5.8 13 523-535 43-55 (94)
47 PF12718 Tropomyosin_1: Tropom 95.3 1 2.2E-05 43.5 15.9 96 157-252 23-118 (143)
48 PF09789 DUF2353: Uncharacteri 95.2 1 2.2E-05 49.0 17.2 76 123-198 21-115 (319)
49 KOG1923 Rac1 GTPase effector F 95.2 0.025 5.4E-07 66.4 5.2 45 79-123 26-80 (830)
50 PF04849 HAP1_N: HAP1 N-termin 95.1 2.3 4.9E-05 46.2 19.4 115 170-289 161-283 (306)
51 COG1579 Zn-ribbon protein, pos 95.0 2.2 4.8E-05 44.8 18.5 25 170-194 90-114 (239)
52 PF09755 DUF2046: Uncharacteri 95.0 1.3 2.8E-05 48.1 17.0 143 128-301 23-182 (310)
53 PF05308 Mito_fiss_reg: Mitoch 94.7 0.1 2.2E-06 54.8 7.9 25 381-405 56-80 (253)
54 KOG0250 DNA repair protein RAD 94.6 1.8 3.9E-05 53.3 18.6 156 141-301 280-448 (1074)
55 KOG0982 Centrosomal protein Nu 94.5 3 6.4E-05 47.2 18.7 110 169-289 297-431 (502)
56 KOG0250 DNA repair protein RAD 94.3 3.4 7.4E-05 51.0 20.1 100 157-256 276-386 (1074)
57 KOG3671 Actin regulatory prote 94.3 0.062 1.3E-06 60.8 5.4 33 354-386 218-250 (569)
58 KOG4673 Transcription factor T 94.2 1.9 4.2E-05 51.0 17.1 61 214-289 580-651 (961)
59 PF08614 ATG16: Autophagy prot 94.2 0.46 1E-05 47.4 10.8 33 216-248 132-164 (194)
60 KOG3671 Actin regulatory prote 94.2 0.072 1.6E-06 60.3 5.6 11 556-566 493-503 (569)
61 KOG0971 Microtubule-associated 94.1 5.2 0.00011 48.8 20.5 72 214-287 396-467 (1243)
62 PF15070 GOLGA2L5: Putative go 94.1 1.7 3.6E-05 51.1 16.6 79 122-200 84-167 (617)
63 PF10186 Atg14: UV radiation r 94.0 3.2 7E-05 42.4 16.8 83 121-203 16-104 (302)
64 PF12718 Tropomyosin_1: Tropom 93.9 3.5 7.5E-05 39.9 15.8 42 212-253 99-140 (143)
65 KOG0996 Structural maintenance 93.9 3.9 8.5E-05 50.9 19.4 80 214-299 942-1021(1293)
66 PF05667 DUF812: Protein of un 93.9 9.9 0.00022 44.7 22.2 37 265-301 502-541 (594)
67 PRK09039 hypothetical protein; 93.9 1.8 3.8E-05 47.2 15.3 22 157-178 83-104 (343)
68 KOG0971 Microtubule-associated 93.8 3.3 7.1E-05 50.5 18.2 35 207-241 455-492 (1243)
69 KOG4360 Uncharacterized coiled 93.5 2.4 5.3E-05 48.7 15.8 71 124-194 158-237 (596)
70 PF14662 CCDC155: Coiled-coil 93.4 3.8 8.2E-05 42.0 15.6 25 169-193 22-46 (193)
71 PRK09039 hypothetical protein; 93.3 9.4 0.0002 41.7 19.7 82 169-253 81-162 (343)
72 PF05700 BCAS2: Breast carcino 93.3 2.5 5.5E-05 43.2 14.6 111 124-235 103-217 (221)
73 PF00261 Tropomyosin: Tropomyo 93.2 7.8 0.00017 39.9 18.0 12 304-315 219-230 (237)
74 KOG4674 Uncharacterized conser 92.9 6.1 0.00013 51.4 19.8 77 124-200 79-160 (1822)
75 PF06818 Fez1: Fez1; InterPro 92.9 3.1 6.8E-05 42.8 14.3 146 158-303 20-181 (202)
76 PRK04863 mukB cell division pr 92.9 4.6 0.0001 51.9 18.7 42 212-253 440-481 (1486)
77 PF09728 Taxilin: Myosin-like 92.8 9.8 0.00021 41.2 18.8 145 128-288 142-299 (309)
78 KOG4593 Mitotic checkpoint pro 92.8 10 0.00022 45.1 19.9 64 214-293 258-324 (716)
79 KOG0963 Transcription factor/C 92.6 12 0.00026 44.1 20.0 71 159-230 186-265 (629)
80 PF15070 GOLGA2L5: Putative go 92.6 7.3 0.00016 45.9 18.7 60 235-299 195-257 (617)
81 KOG4673 Transcription factor T 92.5 10 0.00022 45.3 19.3 50 157-206 476-525 (961)
82 PF00261 Tropomyosin: Tropomyo 92.4 15 0.00032 37.9 19.9 71 216-298 157-227 (237)
83 PF12128 DUF3584: Protein of u 92.3 20 0.00044 45.1 23.1 34 159-192 356-389 (1201)
84 PF10211 Ax_dynein_light: Axon 92.1 5.6 0.00012 40.1 14.8 170 104-286 8-188 (189)
85 PF00038 Filament: Intermediat 91.9 5.6 0.00012 41.7 15.3 80 163-251 5-84 (312)
86 PF06818 Fez1: Fez1; InterPro 91.8 3.4 7.3E-05 42.6 13.0 72 124-195 30-106 (202)
87 KOG0996 Structural maintenance 91.7 16 0.00034 45.9 20.5 19 352-370 599-617 (1293)
88 KOG4674 Uncharacterized conser 91.7 25 0.00053 46.2 22.8 102 214-315 965-1079(1822)
89 KOG1029 Endocytic adaptor prot 91.6 16 0.00035 44.3 19.6 14 125-138 393-406 (1118)
90 PF12128 DUF3584: Protein of u 91.5 15 0.00033 46.2 20.7 77 116-194 598-674 (1201)
91 KOG0933 Structural maintenance 91.5 31 0.00068 43.0 22.2 125 106-230 651-803 (1174)
92 KOG0243 Kinesin-like protein [ 91.5 10 0.00022 47.1 18.5 36 214-249 525-560 (1041)
93 KOG1853 LIS1-interacting prote 91.4 11 0.00024 40.4 16.5 111 135-250 23-141 (333)
94 PRK04778 septation ring format 91.3 10 0.00022 44.0 17.7 9 324-332 548-556 (569)
95 PF04111 APG6: Autophagy prote 91.3 2.7 5.9E-05 45.3 12.4 31 221-251 92-122 (314)
96 PF06548 Kinesin-related: Kine 91.2 29 0.00063 39.9 20.4 79 219-299 401-479 (488)
97 PF05622 HOOK: HOOK protein; 91.1 0.064 1.4E-06 62.8 0.0 43 123-165 237-284 (713)
98 KOG1029 Endocytic adaptor prot 90.9 16 0.00035 44.3 18.8 35 215-249 487-521 (1118)
99 PF08614 ATG16: Autophagy prot 90.9 1.5 3.3E-05 43.7 9.5 81 157-247 104-184 (194)
100 PF08317 Spc7: Spc7 kinetochor 90.9 5.9 0.00013 42.7 14.5 142 123-275 140-290 (325)
101 PF10174 Cast: RIM-binding pro 90.7 11 0.00025 45.5 17.8 134 122-255 319-506 (775)
102 KOG0933 Structural maintenance 90.6 20 0.00044 44.5 19.7 15 279-293 910-924 (1174)
103 PF09325 Vps5: Vps5 C terminal 90.6 20 0.00043 35.8 18.3 193 103-309 19-221 (236)
104 PF08317 Spc7: Spc7 kinetochor 90.6 22 0.00047 38.4 18.4 80 170-252 171-254 (325)
105 KOG0976 Rho/Rac1-interacting s 90.4 31 0.00067 42.2 20.5 45 157-201 94-138 (1265)
106 TIGR01843 type_I_hlyD type I s 90.4 18 0.00039 38.7 17.6 38 214-251 196-233 (423)
107 PF10473 CENP-F_leu_zip: Leuci 90.3 12 0.00025 36.7 14.4 28 168-195 51-78 (140)
108 KOG1830 Wiskott Aldrich syndro 90.3 0.28 6.1E-06 54.9 4.0 30 168-197 56-85 (518)
109 PF05622 HOOK: HOOK protein; 90.2 0.085 1.8E-06 61.9 0.0 38 268-305 384-421 (713)
110 PF07111 HCR: Alpha helical co 90.2 13 0.00028 44.5 17.3 87 212-303 174-272 (739)
111 KOG1785 Tyrosine kinase negati 90.2 0.41 9E-06 53.3 5.2 7 472-478 485-491 (563)
112 PRK04863 mukB cell division pr 90.2 13 0.00027 48.1 18.6 13 618-630 961-973 (1486)
113 PF10186 Atg14: UV radiation r 90.1 9.8 0.00021 39.0 14.8 80 171-251 22-107 (302)
114 PF09789 DUF2353: Uncharacteri 90.0 16 0.00034 40.2 16.7 65 235-299 126-195 (319)
115 KOG1937 Uncharacterized conser 90.0 17 0.00036 41.7 17.2 65 214-285 455-519 (521)
116 KOG0612 Rho-associated, coiled 89.9 12 0.00026 47.1 17.3 63 169-233 623-693 (1317)
117 KOG4643 Uncharacterized coiled 89.8 35 0.00075 42.6 20.6 71 125-195 257-341 (1195)
118 PRK04778 septation ring format 89.8 26 0.00056 40.7 19.3 46 270-315 378-423 (569)
119 PF10174 Cast: RIM-binding pro 89.7 9.4 0.0002 46.2 16.1 134 157-290 240-400 (775)
120 PF09755 DUF2046: Uncharacteri 89.6 33 0.00071 37.7 18.6 35 214-248 142-176 (310)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.6 11 0.00025 35.6 13.6 71 214-285 59-129 (132)
122 PF15619 Lebercilin: Ciliary p 89.5 12 0.00027 38.0 14.6 74 123-196 66-145 (194)
123 KOG0978 E3 ubiquitin ligase in 89.4 14 0.0003 44.3 16.9 36 213-248 586-621 (698)
124 PF05483 SCP-1: Synaptonemal c 89.4 41 0.00088 40.5 20.2 113 158-275 516-650 (786)
125 PRK01156 chromosome segregatio 89.3 34 0.00074 41.3 20.6 33 116-148 474-506 (895)
126 PF13851 GAS: Growth-arrest sp 89.3 22 0.00049 36.2 16.3 77 116-192 46-130 (201)
127 PF14915 CCDC144C: CCDC144C pr 89.3 37 0.00081 37.1 19.0 139 115-253 60-246 (305)
128 TIGR03007 pepcterm_ChnLen poly 89.2 29 0.00063 38.9 18.7 27 125-151 161-187 (498)
129 TIGR01000 bacteriocin_acc bact 89.0 24 0.00052 39.5 17.8 32 119-150 91-122 (457)
130 KOG0979 Structural maintenance 88.9 19 0.0004 44.7 17.7 24 122-145 206-229 (1072)
131 KOG0995 Centromere-associated 88.8 16 0.00035 42.8 16.4 38 157-194 215-253 (581)
132 PF07106 TBPIP: Tat binding pr 88.7 3.5 7.5E-05 40.2 9.8 85 214-308 72-162 (169)
133 PF05483 SCP-1: Synaptonemal c 88.7 46 0.00099 40.1 20.0 74 215-289 399-478 (786)
134 smart00787 Spc7 Spc7 kinetocho 88.6 15 0.00033 39.9 15.4 93 157-252 153-249 (312)
135 PF10473 CENP-F_leu_zip: Leuci 88.4 19 0.00041 35.2 14.4 69 157-242 54-122 (140)
136 KOG0980 Actin-binding protein 88.3 46 0.001 41.0 20.1 20 186-205 389-408 (980)
137 KOG2391 Vacuolar sorting prote 88.1 5.5 0.00012 44.0 11.6 10 664-673 331-340 (365)
138 PF09730 BicD: Microtubule-ass 88.1 3.6 7.7E-05 49.2 11.1 76 122-200 73-152 (717)
139 PF10226 DUF2216: Uncharacteri 88.0 7.4 0.00016 39.9 11.8 106 128-233 12-134 (195)
140 PF15254 CCDC14: Coiled-coil d 87.7 29 0.00064 42.1 17.9 26 175-200 426-451 (861)
141 PF15195 TMEM210: TMEM210 fami 87.5 0.34 7.3E-06 44.7 1.9 7 470-476 83-89 (116)
142 PRK01156 chromosome segregatio 87.4 68 0.0015 38.9 21.4 6 374-379 830-835 (895)
143 PF13863 DUF4200: Domain of un 87.3 8.3 0.00018 35.4 10.9 73 126-198 26-110 (126)
144 PF04012 PspA_IM30: PspA/IM30 87.0 19 0.0004 36.3 14.1 119 131-249 11-147 (221)
145 PF04156 IncA: IncA protein; 86.9 21 0.00047 34.9 14.1 31 215-245 152-182 (191)
146 PF01486 K-box: K-box region; 86.8 5.2 0.00011 36.0 9.0 71 121-194 15-100 (100)
147 COG5185 HEC1 Protein involved 86.7 70 0.0015 37.2 20.9 73 219-299 485-560 (622)
148 KOG0018 Structural maintenance 86.7 82 0.0018 39.7 21.2 98 217-315 803-905 (1141)
149 KOG0963 Transcription factor/C 86.6 52 0.0011 39.1 18.8 103 213-315 195-315 (629)
150 PRK10884 SH3 domain-containing 86.6 3.8 8.2E-05 42.0 9.0 40 212-251 123-162 (206)
151 PHA03211 serine/threonine kina 86.6 0.68 1.5E-05 51.7 4.0 13 634-646 342-354 (461)
152 PF09738 DUF2051: Double stran 86.5 43 0.00094 36.5 17.3 79 123-201 75-172 (302)
153 PF12325 TMF_TATA_bd: TATA ele 86.5 24 0.00052 33.6 13.6 29 123-151 14-42 (120)
154 PF05911 DUF869: Plant protein 86.3 31 0.00067 41.9 17.5 35 214-248 680-714 (769)
155 PF01576 Myosin_tail_1: Myosin 86.1 0.23 4.9E-06 59.9 0.0 148 116-263 129-313 (859)
156 KOG0999 Microtubule-associated 86.1 48 0.001 39.2 17.9 22 269-290 195-216 (772)
157 PF05667 DUF812: Protein of un 86.0 57 0.0012 38.6 19.1 39 211-249 495-533 (594)
158 COG1340 Uncharacterized archae 85.8 59 0.0013 35.5 22.0 70 125-194 13-87 (294)
159 TIGR03185 DNA_S_dndD DNA sulfu 85.6 74 0.0016 37.5 19.9 78 119-196 203-289 (650)
160 COG5178 PRP8 U5 snRNP spliceos 85.6 0.56 1.2E-05 57.8 2.8 6 643-648 176-181 (2365)
161 PF15397 DUF4618: Domain of un 85.5 30 0.00066 37.0 15.2 26 214-239 200-225 (258)
162 PF00769 ERM: Ezrin/radixin/mo 85.3 16 0.00035 38.2 13.0 35 157-191 35-69 (246)
163 PHA03247 large tegument protei 85.2 1.6 3.4E-05 57.8 6.5 17 134-150 504-520 (3151)
164 PF07106 TBPIP: Tat binding pr 85.2 7.8 0.00017 37.7 10.0 63 121-183 75-137 (169)
165 PF01576 Myosin_tail_1: Myosin 85.1 0.27 5.9E-06 59.3 0.0 95 214-320 525-626 (859)
166 PRK10929 putative mechanosensi 85.0 14 0.0003 46.5 14.2 50 234-288 264-313 (1109)
167 KOG4001 Axonemal dynein light 84.8 2.2 4.8E-05 44.2 6.3 67 217-288 188-255 (259)
168 PF04156 IncA: IncA protein; 84.7 26 0.00057 34.3 13.6 39 157-195 83-121 (191)
169 TIGR02680 conserved hypothetic 84.6 91 0.002 40.2 21.4 29 123-151 747-775 (1353)
170 PF15619 Lebercilin: Ciliary p 84.6 50 0.0011 33.7 19.6 27 259-285 162-188 (194)
171 PF12325 TMF_TATA_bd: TATA ele 84.3 33 0.00071 32.7 13.4 44 157-200 18-61 (120)
172 TIGR03017 EpsF chain length de 84.1 39 0.00085 37.2 16.0 28 126-153 172-199 (444)
173 TIGR01005 eps_transp_fam exopo 84.0 98 0.0021 36.9 20.2 26 127-152 196-221 (754)
174 COG0419 SbcC ATPase involved i 84.0 77 0.0017 38.8 19.7 32 169-200 274-305 (908)
175 KOG0995 Centromere-associated 83.8 27 0.00058 41.1 14.8 31 170-200 295-325 (581)
176 PF09787 Golgin_A5: Golgin sub 83.7 90 0.002 35.9 21.5 19 178-196 189-207 (511)
177 KOG0962 DNA repair protein RAD 83.6 1.1E+02 0.0025 39.3 21.0 61 124-184 853-914 (1294)
178 PF05701 WEMBL: Weak chloropla 83.5 93 0.002 36.0 22.5 17 121-137 175-191 (522)
179 KOG1922 Rho GTPase effector BN 83.4 1 2.3E-05 53.7 3.9 15 523-537 392-406 (833)
180 PF04111 APG6: Autophagy prote 83.2 5.7 0.00012 42.9 8.9 43 212-254 48-90 (314)
181 KOG0249 LAR-interacting protei 82.9 23 0.0005 42.7 14.0 73 125-197 49-133 (916)
182 TIGR02977 phageshock_pspA phag 82.8 35 0.00077 34.8 14.0 99 152-250 34-149 (219)
183 smart00787 Spc7 Spc7 kinetocho 82.8 33 0.00072 37.3 14.5 141 124-275 136-285 (312)
184 PF09730 BicD: Microtubule-ass 82.8 36 0.00079 41.1 15.9 106 121-242 256-387 (717)
185 PF15066 CAGE1: Cancer-associa 82.7 38 0.00083 39.1 15.2 68 159-229 401-468 (527)
186 PRK10698 phage shock protein P 82.6 37 0.00081 35.1 14.2 99 152-250 34-149 (222)
187 PRK09343 prefoldin subunit bet 82.5 19 0.00042 33.8 11.1 42 159-200 4-45 (121)
188 PF09304 Cortex-I_coil: Cortex 82.2 27 0.0006 32.9 11.7 86 157-252 11-96 (107)
189 KOG3091 Nuclear pore complex, 82.2 16 0.00034 42.2 12.1 120 157-284 336-455 (508)
190 PF06160 EzrA: Septation ring 82.1 72 0.0016 37.2 17.7 73 215-287 445-522 (560)
191 PRK10884 SH3 domain-containing 82.0 11 0.00023 38.8 9.9 18 82-99 36-53 (206)
192 COG1842 PspA Phage shock prote 81.9 43 0.00092 35.0 14.3 43 152-194 34-77 (225)
193 PF06008 Laminin_I: Laminin Do 81.9 50 0.0011 34.4 14.9 38 213-252 126-163 (264)
194 COG4942 Membrane-bound metallo 81.8 96 0.0021 35.5 17.9 39 214-252 210-248 (420)
195 KOG0976 Rho/Rac1-interacting s 81.5 1.1E+02 0.0024 37.9 18.8 44 210-253 312-355 (1265)
196 KOG1899 LAR transmembrane tyro 81.5 1.3E+02 0.0028 36.2 19.2 56 179-238 170-232 (861)
197 KOG2391 Vacuolar sorting prote 81.4 29 0.00062 38.6 13.3 6 323-328 33-38 (365)
198 PF05911 DUF869: Plant protein 81.4 42 0.00091 40.9 15.9 79 169-247 24-118 (769)
199 KOG0979 Structural maintenance 81.0 95 0.002 39.0 18.5 36 212-247 274-309 (1072)
200 KOG1853 LIS1-interacting prote 80.7 33 0.00071 37.0 13.0 56 214-285 133-188 (333)
201 KOG1003 Actin filament-coating 80.3 78 0.0017 33.0 19.4 130 124-253 3-148 (205)
202 TIGR03185 DNA_S_dndD DNA sulfu 80.0 49 0.0011 38.9 15.7 64 134-197 393-463 (650)
203 KOG0982 Centrosomal protein Nu 80.0 69 0.0015 36.8 15.8 34 214-247 403-436 (502)
204 PF07058 Myosin_HC-like: Myosi 79.8 22 0.00047 39.1 11.6 71 220-302 58-128 (351)
205 PF07462 MSP1_C: Merozoite sur 79.8 6.9 0.00015 45.5 8.4 47 558-606 362-408 (574)
206 KOG1830 Wiskott Aldrich syndro 79.3 2.4 5.3E-05 47.8 4.6 15 519-533 365-379 (518)
207 KOG0249 LAR-interacting protei 79.2 21 0.00045 43.1 12.0 27 124-150 104-130 (916)
208 PF05701 WEMBL: Weak chloropla 78.9 1E+02 0.0022 35.7 17.4 128 124-251 248-409 (522)
209 KOG0162 Myosin class I heavy c 78.7 1.7 3.6E-05 51.9 3.2 12 353-364 850-861 (1106)
210 PLN02939 transferase, transfer 78.5 72 0.0016 39.9 16.8 86 123-208 224-332 (977)
211 COG2433 Uncharacterized conser 78.3 17 0.00036 43.0 10.9 38 114-151 411-448 (652)
212 TIGR00634 recN DNA repair prot 78.1 1.4E+02 0.0031 34.6 18.7 85 214-300 301-385 (563)
213 PF06005 DUF904: Protein of un 78.1 27 0.00059 30.5 9.7 32 158-189 7-38 (72)
214 KOG3397 Acetyltransferases [Ge 77.4 3.7 8E-05 41.9 4.8 16 408-423 86-101 (225)
215 PHA03247 large tegument protei 77.4 4 8.6E-05 54.4 6.2 15 216-230 1706-1720(3151)
216 PF14257 DUF4349: Domain of un 77.3 12 0.00025 38.9 8.6 69 115-183 122-190 (262)
217 PF14992 TMCO5: TMCO5 family 77.0 28 0.00061 37.6 11.5 87 159-245 8-94 (280)
218 PF00769 ERM: Ezrin/radixin/mo 77.0 37 0.0008 35.6 12.2 42 213-254 53-94 (246)
219 PF03276 Gag_spuma: Spumavirus 76.7 20 0.00043 41.9 10.8 67 553-628 301-367 (582)
220 KOG0018 Structural maintenance 76.3 45 0.00098 41.8 14.1 165 126-299 815-999 (1141)
221 COG2433 Uncharacterized conser 76.2 10 0.00022 44.8 8.4 59 124-182 435-508 (652)
222 PF11932 DUF3450: Protein of u 75.7 99 0.0021 32.1 14.8 75 126-200 22-101 (251)
223 COG5293 Predicted ATPase [Gene 75.5 1.7E+02 0.0037 34.2 19.5 161 124-289 192-407 (591)
224 KOG0559 Dihydrolipoamide succi 75.5 6.4 0.00014 43.9 6.4 34 555-588 256-289 (457)
225 PF04859 DUF641: Plant protein 75.5 3.6 7.7E-05 39.8 4.0 40 152-191 90-130 (131)
226 PF11365 DUF3166: Protein of u 75.4 12 0.00027 34.5 7.2 64 124-187 14-94 (96)
227 PF14915 CCDC144C: CCDC144C pr 75.3 1.4E+02 0.0029 33.0 20.8 182 123-315 4-240 (305)
228 PRK15313 autotransport protein 75.2 3 6.5E-05 51.0 4.2 9 532-540 655-663 (955)
229 PRK11281 hypothetical protein; 75.2 1.6E+02 0.0034 37.6 18.7 164 122-290 125-335 (1113)
230 PF09744 Jnk-SapK_ap_N: JNK_SA 75.1 60 0.0013 32.3 12.4 38 217-254 85-122 (158)
231 PF15066 CAGE1: Cancer-associa 74.9 1E+02 0.0022 35.9 15.5 38 279-323 446-484 (527)
232 KOG4572 Predicted DNA-binding 74.8 1.8E+02 0.0038 36.3 17.9 92 157-248 931-1029(1424)
233 KOG2236 Uncharacterized conser 74.3 3.3 7.1E-05 47.1 3.9 17 349-365 320-336 (483)
234 KOG0978 E3 ubiquitin ligase in 74.1 2.2E+02 0.0047 34.8 19.4 26 170-195 490-515 (698)
235 KOG0999 Microtubule-associated 74.1 2E+02 0.0043 34.4 20.2 68 120-187 10-82 (772)
236 PF01698 FLO_LFY: Floricaula / 74.1 1 2.2E-05 50.0 0.0 9 526-534 50-58 (386)
237 PF10168 Nup88: Nuclear pore c 74.0 2.2E+02 0.0047 34.7 19.3 92 157-251 567-669 (717)
238 PF01920 Prefoldin_2: Prefoldi 74.0 18 0.0004 31.8 7.9 38 214-251 62-99 (106)
239 TIGR03007 pepcterm_ChnLen poly 73.8 1E+02 0.0022 34.6 15.5 29 123-151 202-230 (498)
240 KOG4807 F-actin binding protei 73.7 1.7E+02 0.0038 33.5 19.9 48 265-315 478-538 (593)
241 KOG2991 Splicing regulator [RN 73.6 48 0.001 35.9 11.9 25 214-238 264-288 (330)
242 PF05518 Totivirus_coat: Totiv 73.0 5.5 0.00012 47.8 5.5 15 124-138 208-222 (759)
243 PF03962 Mnd1: Mnd1 family; I 72.7 30 0.00065 35.0 9.9 79 214-298 62-140 (188)
244 KOG0239 Kinesin (KAR3 subfamil 72.2 1.1E+02 0.0024 36.8 15.8 90 157-246 184-273 (670)
245 PF05557 MAD: Mitotic checkpoi 71.6 1.3 2.8E-05 52.3 0.0 72 124-195 60-133 (722)
246 PF14197 Cep57_CLD_2: Centroso 71.3 30 0.00065 30.0 8.2 64 123-189 3-67 (69)
247 PF08172 CASP_C: CASP C termin 71.2 20 0.00044 37.8 8.6 103 212-315 4-132 (248)
248 TIGR01010 BexC_CtrB_KpsE polys 70.5 86 0.0019 33.9 13.5 23 173-195 211-233 (362)
249 KOG1922 Rho GTPase effector BN 70.4 6.2 0.00013 47.3 5.3 6 467-472 313-318 (833)
250 KOG4809 Rab6 GTPase-interactin 70.0 2E+02 0.0042 34.3 16.4 80 157-236 347-443 (654)
251 KOG4590 Signal transduction pr 69.5 6.4 0.00014 44.4 4.8 16 557-572 258-273 (409)
252 PF05010 TACC: Transforming ac 69.4 1.5E+02 0.0032 30.9 16.2 33 213-245 153-185 (207)
253 PRK11519 tyrosine kinase; Prov 69.1 66 0.0014 38.4 13.3 38 124-161 266-303 (719)
254 PRK14849 putative lipoprotein/ 69.0 2.8 6.2E-05 54.2 2.2 8 532-539 1501-1508(1806)
255 PF14988 DUF4515: Domain of un 68.8 1.5E+02 0.0032 30.6 17.7 53 124-181 17-73 (206)
256 KOG0804 Cytoplasmic Zn-finger 68.7 1E+02 0.0022 35.7 13.7 62 213-289 388-449 (493)
257 PF07304 SRA1: Steroid recepto 68.6 24 0.00052 34.7 8.0 14 524-537 41-54 (157)
258 PF08580 KAR9: Yeast cortical 68.6 2.8E+02 0.006 33.7 19.9 23 120-142 132-154 (683)
259 TIGR02680 conserved hypothetic 68.0 2.7E+02 0.006 36.1 19.0 19 556-574 738-756 (1353)
260 PRK15422 septal ring assembly 67.4 75 0.0016 28.7 9.9 43 157-199 6-48 (79)
261 PF10168 Nup88: Nuclear pore c 67.3 1.5E+02 0.0032 36.0 15.6 44 157-200 581-624 (717)
262 COG1382 GimC Prefoldin, chaper 67.0 58 0.0013 31.3 9.9 87 162-248 6-111 (119)
263 PF13863 DUF4200: Domain of un 66.7 1.1E+02 0.0023 28.2 12.7 78 179-256 35-116 (126)
264 PRK14950 DNA polymerase III su 66.6 31 0.00067 40.2 9.7 31 559-592 461-491 (585)
265 KOG0964 Structural maintenance 66.4 2.5E+02 0.0053 35.7 17.0 40 213-252 784-823 (1200)
266 PF15397 DUF4618: Domain of un 66.4 1.9E+02 0.0042 31.1 17.1 31 269-300 201-231 (258)
267 PF10498 IFT57: Intra-flagella 66.2 1.3E+02 0.0028 33.6 13.9 67 216-288 289-355 (359)
268 KOG0946 ER-Golgi vesicle-tethe 66.0 78 0.0017 39.0 12.7 39 214-252 848-886 (970)
269 PF10211 Ax_dynein_light: Axon 65.9 1.6E+02 0.0034 29.9 13.9 63 171-236 122-185 (189)
270 PF11559 ADIP: Afadin- and alp 65.6 1.3E+02 0.0028 28.8 16.5 96 102-201 15-112 (151)
271 PF13514 AAA_27: AAA domain 65.4 3.6E+02 0.0079 34.0 19.0 34 562-595 742-775 (1111)
272 cd00632 Prefoldin_beta Prefold 65.2 71 0.0015 29.0 9.8 31 170-200 7-37 (105)
273 PF09304 Cortex-I_coil: Cortex 64.9 45 0.00098 31.6 8.6 45 212-256 14-58 (107)
274 KOG1850 Myosin-like coiled-coi 64.6 2.4E+02 0.0053 31.6 20.5 68 221-306 208-276 (391)
275 KOG3895 Synaptic vesicle prote 64.5 11 0.00025 42.0 5.4 18 463-480 386-403 (488)
276 TIGR02338 gimC_beta prefoldin, 64.4 85 0.0018 28.8 10.3 83 169-251 10-104 (110)
277 KOG0804 Cytoplasmic Zn-finger 64.3 41 0.0009 38.7 9.7 56 135-190 347-410 (493)
278 PF10226 DUF2216: Uncharacteri 64.1 1.9E+02 0.004 30.1 14.1 43 213-255 47-92 (195)
279 COG3074 Uncharacterized protei 63.9 90 0.0019 27.8 9.6 39 159-197 8-46 (79)
280 PRK14948 DNA polymerase III su 63.9 9.3 0.0002 45.0 4.9 8 381-388 440-447 (620)
281 COG1340 Uncharacterized archae 63.8 2.3E+02 0.005 31.1 20.0 75 214-300 158-232 (294)
282 PF11559 ADIP: Afadin- and alp 63.7 1E+02 0.0022 29.5 11.1 30 268-297 115-144 (151)
283 KOG4672 Uncharacterized conser 63.6 14 0.00031 41.8 5.9 11 666-676 476-486 (487)
284 PRK09841 cryptic autophosphory 63.6 84 0.0018 37.6 12.7 29 126-154 268-296 (726)
285 TIGR03017 EpsF chain length de 63.3 2.1E+02 0.0046 31.6 14.9 24 124-147 214-237 (444)
286 PF13514 AAA_27: AAA domain 63.3 3.3E+02 0.0073 34.3 18.2 34 214-247 242-275 (1111)
287 PF11802 CENP-K: Centromere-as 62.9 91 0.002 33.7 11.5 34 259-292 152-185 (268)
288 PF06705 SF-assemblin: SF-asse 62.9 1.9E+02 0.0042 29.9 21.0 80 213-299 98-181 (247)
289 PF05103 DivIVA: DivIVA protei 62.8 6.8 0.00015 35.9 2.9 41 213-253 24-64 (131)
290 COG3883 Uncharacterized protei 61.7 2.4E+02 0.0052 30.6 18.0 27 124-150 37-63 (265)
291 KOG0243 Kinesin-like protein [ 61.5 3.8E+02 0.0082 34.2 17.6 107 121-234 407-514 (1041)
292 TIGR01005 eps_transp_fam exopo 61.1 1.7E+02 0.0036 35.0 14.5 29 120-148 239-267 (754)
293 KOG0288 WD40 repeat protein Ti 60.9 2.2E+02 0.0048 32.8 14.4 64 130-196 4-68 (459)
294 COG1382 GimC Prefoldin, chaper 60.6 71 0.0015 30.7 9.2 69 121-196 9-104 (119)
295 KOG0162 Myosin class I heavy c 60.0 10 0.00023 45.6 4.3 29 74-102 511-540 (1106)
296 KOG1925 Rac1 GTPase effector F 59.9 22 0.00047 41.5 6.7 15 407-421 140-154 (817)
297 PF12329 TMF_DNA_bd: TATA elem 59.9 1.2E+02 0.0025 26.6 9.7 24 225-248 37-60 (74)
298 PF07544 Med9: RNA polymerase 59.7 18 0.00039 32.0 4.8 61 116-178 19-82 (83)
299 PF09787 Golgin_A5: Golgin sub 59.6 3.3E+02 0.0071 31.5 17.5 112 169-290 214-335 (511)
300 PF05266 DUF724: Protein of un 59.6 1.8E+02 0.0038 29.8 12.5 69 157-239 88-156 (190)
301 PF14197 Cep57_CLD_2: Centroso 59.4 39 0.00085 29.3 6.7 63 218-287 2-66 (69)
302 COG5185 HEC1 Protein involved 59.0 1.8E+02 0.0039 34.1 13.4 44 157-200 251-295 (622)
303 PF08172 CASP_C: CASP C termin 58.8 66 0.0014 34.1 9.6 49 225-292 90-138 (248)
304 PF04012 PspA_IM30: PspA/IM30 58.7 2.1E+02 0.0045 28.9 17.7 13 279-291 193-205 (221)
305 KOG2129 Uncharacterized conser 58.7 87 0.0019 36.0 10.9 25 224-248 132-156 (552)
306 cd00632 Prefoldin_beta Prefold 58.3 1.2E+02 0.0027 27.4 10.1 29 123-151 4-32 (105)
307 PF07111 HCR: Alpha helical co 58.3 4.3E+02 0.0093 32.4 19.4 39 216-254 237-275 (739)
308 PF11180 DUF2968: Protein of u 58.2 59 0.0013 33.6 8.8 44 124-167 111-155 (192)
309 PRK11281 hypothetical protein; 58.2 3.3E+02 0.0072 34.9 16.8 22 174-195 126-147 (1113)
310 KOG4196 bZIP transcription fac 58.1 84 0.0018 30.9 9.3 84 157-251 34-118 (135)
311 PF13870 DUF4201: Domain of un 57.6 2E+02 0.0043 28.3 19.4 32 120-151 1-32 (177)
312 KOG0946 ER-Golgi vesicle-tethe 57.5 2.9E+02 0.0063 34.4 15.3 26 124-149 663-688 (970)
313 PF14077 WD40_alt: Alternative 57.4 9.8 0.00021 31.1 2.5 22 213-234 17-38 (48)
314 COG4026 Uncharacterized protei 57.2 34 0.00074 36.3 7.0 30 222-251 136-165 (290)
315 PF15290 Syntaphilin: Golgi-lo 57.0 80 0.0017 34.5 9.9 28 124-151 67-94 (305)
316 KOG2546 Abl interactor ABI-1, 56.9 11 0.00025 42.7 3.8 29 243-273 84-114 (483)
317 cd07666 BAR_SNX7 The Bin/Amphi 56.8 2.7E+02 0.0059 29.6 16.4 24 277-300 197-220 (243)
318 PF05266 DUF724: Protein of un 56.7 95 0.002 31.7 10.0 40 157-196 112-151 (190)
319 PF05529 Bap31: B-cell recepto 56.7 52 0.0011 32.7 8.1 28 157-184 163-190 (192)
320 PF06003 SMN: Survival motor n 56.5 3.6 7.9E-05 43.4 0.0 8 361-368 65-72 (264)
321 KOG0239 Kinesin (KAR3 subfamil 56.4 2E+02 0.0044 34.7 14.1 38 214-251 255-292 (670)
322 TIGR02338 gimC_beta prefoldin, 56.4 1.4E+02 0.003 27.5 10.2 28 124-151 9-36 (110)
323 TIGR03752 conj_TIGR03752 integ 56.3 40 0.00088 38.9 8.0 40 214-253 66-105 (472)
324 KOG4302 Microtubule-associated 56.2 1.7E+02 0.0038 35.3 13.4 123 167-300 59-185 (660)
325 PF14282 FlxA: FlxA-like prote 55.8 73 0.0016 29.4 8.3 25 122-146 16-40 (106)
326 PF10146 zf-C4H2: Zinc finger- 55.6 2.2E+02 0.0048 30.0 12.7 15 214-228 60-74 (230)
327 PF15294 Leu_zip: Leucine zipp 55.5 3.1E+02 0.0067 29.9 14.9 23 171-193 127-149 (278)
328 PF06785 UPF0242: Uncharacteri 55.5 1.9E+02 0.0041 32.6 12.5 30 170-199 128-157 (401)
329 PF12238 MSA-2c: Merozoite sur 55.5 23 0.00051 36.7 5.5 9 464-472 135-143 (205)
330 COG3206 GumC Uncharacterized p 54.7 2.8E+02 0.006 31.2 14.2 100 157-256 287-394 (458)
331 KOG0559 Dihydrolipoamide succi 54.5 24 0.00052 39.7 5.7 14 595-608 256-269 (457)
332 PRK09343 prefoldin subunit bet 54.2 1.6E+02 0.0035 27.7 10.5 27 125-151 14-40 (121)
333 PF10152 DUF2360: Predicted co 53.0 55 0.0012 31.9 7.4 18 518-535 107-124 (148)
334 PF13870 DUF4201: Domain of un 52.9 2.4E+02 0.0051 27.8 12.6 26 169-194 6-31 (177)
335 PF15254 CCDC14: Coiled-coil d 52.8 2.5E+02 0.0053 34.8 13.8 37 157-193 436-479 (861)
336 KOG0964 Structural maintenance 52.8 6.1E+02 0.013 32.5 20.5 38 159-196 332-369 (1200)
337 PRK11519 tyrosine kinase; Prov 52.3 2.8E+02 0.006 33.3 14.4 27 169-195 267-293 (719)
338 PF09006 Surfac_D-trimer: Lung 52.2 30 0.00064 28.3 4.5 29 171-199 1-29 (46)
339 KOG4360 Uncharacterized coiled 52.1 3.3E+02 0.0072 32.3 14.2 25 122-146 170-194 (596)
340 PRK03947 prefoldin subunit alp 52.0 2.1E+02 0.0046 27.0 11.2 39 214-252 94-132 (140)
341 PRK11020 hypothetical protein; 51.8 46 0.001 31.9 6.3 52 236-294 6-57 (118)
342 PF06248 Zw10: Centromere/kine 51.7 4.2E+02 0.009 31.0 15.4 25 127-151 9-33 (593)
343 cd07665 BAR_SNX1 The Bin/Amphi 51.4 3.2E+02 0.0069 28.9 16.8 28 279-307 188-215 (234)
344 PF02994 Transposase_22: L1 tr 51.4 25 0.00053 39.0 5.3 45 207-251 144-188 (370)
345 PF09766 FimP: Fms-interacting 51.2 1.1E+02 0.0023 34.0 10.0 99 157-256 14-143 (355)
346 KOG1937 Uncharacterized conser 51.2 4.7E+02 0.01 30.7 20.3 97 214-312 396-518 (521)
347 KOG4590 Signal transduction pr 51.1 21 0.00047 40.3 4.8 6 385-390 9-14 (409)
348 PF13874 Nup54: Nucleoporin co 51.0 57 0.0012 31.3 7.1 91 158-251 33-123 (141)
349 KOG4849 mRNA cleavage factor I 51.0 17 0.00037 40.5 4.0 7 562-568 362-368 (498)
350 TIGR01000 bacteriocin_acc bact 50.9 2.7E+02 0.0058 31.4 13.3 16 216-231 245-260 (457)
351 KOG4593 Mitotic checkpoint pro 50.6 5.6E+02 0.012 31.4 19.6 35 603-637 626-663 (716)
352 PF11932 DUF3450: Protein of u 50.2 1.5E+02 0.0033 30.7 10.5 38 157-194 44-81 (251)
353 TIGR02231 conserved hypothetic 50.0 1.2E+02 0.0026 34.7 10.6 33 219-251 136-168 (525)
354 PF09744 Jnk-SapK_ap_N: JNK_SA 49.7 1.7E+02 0.0037 29.2 10.2 26 170-195 90-115 (158)
355 KOG0132 RNA polymerase II C-te 49.6 24 0.00053 42.8 5.1 11 403-413 455-465 (894)
356 PF12004 DUF3498: Domain of un 49.6 5.5 0.00012 45.9 0.0 15 122-136 373-387 (495)
357 PF03962 Mnd1: Mnd1 family; I 49.2 2.5E+02 0.0054 28.5 11.6 13 259-271 133-145 (188)
358 PF07321 YscO: Type III secret 48.9 1.6E+02 0.0035 29.2 10.0 67 123-189 65-136 (152)
359 PF11544 Spc42p: Spindle pole 48.7 1.1E+02 0.0024 27.4 7.9 29 157-185 7-35 (76)
360 PF01486 K-box: K-box region; 48.5 1.8E+02 0.004 26.1 9.5 32 214-245 68-99 (100)
361 PF13166 AAA_13: AAA domain 48.5 5.2E+02 0.011 30.4 18.2 6 358-363 514-519 (712)
362 PRK10929 putative mechanosensi 48.4 7.1E+02 0.015 32.1 17.5 33 164-196 203-235 (1109)
363 PF06156 DUF972: Protein of un 48.3 24 0.00052 33.0 4.0 25 265-289 33-57 (107)
364 PF03961 DUF342: Protein of un 48.3 99 0.0022 34.8 9.5 75 121-195 330-408 (451)
365 PRK14141 heat shock protein Gr 48.2 2.4E+02 0.0053 29.4 11.5 94 104-201 21-126 (209)
366 KOG0566 Inositol-1,4,5-triphos 48.0 24 0.00052 43.7 4.8 13 353-365 839-851 (1080)
367 KOG4001 Axonemal dynein light 47.6 88 0.0019 32.9 8.1 60 124-183 184-249 (259)
368 COG4717 Uncharacterized conser 47.6 6.9E+02 0.015 31.6 16.5 59 121-179 181-243 (984)
369 PF05700 BCAS2: Breast carcino 47.2 1.4E+02 0.0031 30.6 9.7 36 170-205 137-172 (221)
370 cd07627 BAR_Vps5p The Bin/Amph 47.0 3.3E+02 0.0072 27.7 18.2 85 214-307 115-199 (216)
371 COG4372 Uncharacterized protei 46.9 5.1E+02 0.011 29.9 21.0 16 284-299 264-279 (499)
372 PRK09841 cryptic autophosphory 46.9 3.6E+02 0.0079 32.4 14.3 28 169-196 267-294 (726)
373 PF03904 DUF334: Domain of unk 46.9 2.7E+02 0.0059 29.7 11.6 37 261-297 113-149 (230)
374 KOG3564 GTPase-activating prot 46.7 1.1E+02 0.0024 35.8 9.4 70 123-192 26-100 (604)
375 KOG0962 DNA repair protein RAD 46.5 8.2E+02 0.018 32.2 19.5 24 12-37 45-68 (1294)
376 cd07664 BAR_SNX2 The Bin/Amphi 46.5 3.7E+02 0.0081 28.2 15.6 28 279-307 188-215 (234)
377 PF10267 Tmemb_cc2: Predicted 46.5 4.5E+02 0.0097 30.0 14.1 35 120-154 207-241 (395)
378 KOG4672 Uncharacterized conser 46.2 33 0.00071 39.1 5.2 9 435-443 268-276 (487)
379 PRK12704 phosphodiesterase; Pr 46.1 5.5E+02 0.012 30.1 19.0 52 210-261 103-154 (520)
380 KOG1962 B-cell receptor-associ 45.6 1.3E+02 0.0029 31.6 9.1 63 219-286 149-211 (216)
381 KOG3895 Synaptic vesicle prote 44.9 30 0.00066 38.9 4.7 10 129-138 173-182 (488)
382 PF10212 TTKRSYEDQ: Predicted 44.8 3.1E+02 0.0067 32.4 12.7 38 214-251 420-457 (518)
383 KOG1899 LAR transmembrane tyro 44.5 3.1E+02 0.0068 33.3 12.7 44 213-256 173-216 (861)
384 PF06005 DUF904: Protein of un 44.2 1E+02 0.0022 27.0 6.9 27 214-240 18-44 (72)
385 PF06156 DUF972: Protein of un 44.1 88 0.0019 29.3 6.9 45 157-201 10-54 (107)
386 PRK10361 DNA recombination pro 44.1 5.9E+02 0.013 29.8 20.4 51 262-319 141-195 (475)
387 COG1730 GIM5 Predicted prefold 44.0 2.6E+02 0.0056 27.7 10.4 41 213-253 93-133 (145)
388 KOG0709 CREB/ATF family transc 43.8 51 0.0011 38.0 6.3 50 152-201 269-318 (472)
389 PF07989 Microtub_assoc: Micro 43.7 2.2E+02 0.0047 25.1 8.9 34 216-249 38-71 (75)
390 COG4026 Uncharacterized protei 43.3 2E+02 0.0042 30.9 9.9 33 212-244 154-186 (290)
391 PF02403 Seryl_tRNA_N: Seryl-t 42.9 2E+02 0.0044 25.9 8.9 64 125-195 36-100 (108)
392 TIGR02231 conserved hypothetic 42.8 1.7E+02 0.0038 33.4 10.5 26 123-148 69-94 (525)
393 PF09728 Taxilin: Myosin-like 42.8 4.8E+02 0.011 28.5 19.7 30 122-151 19-48 (309)
394 PF01920 Prefoldin_2: Prefoldi 42.3 2.4E+02 0.0051 24.7 10.1 88 159-246 2-101 (106)
395 PF10458 Val_tRNA-synt_C: Valy 41.7 1.1E+02 0.0024 25.8 6.6 65 218-287 1-65 (66)
396 KOG2991 Splicing regulator [RN 41.5 5.2E+02 0.011 28.4 14.9 67 227-300 216-282 (330)
397 PRK10361 DNA recombination pro 41.5 6.4E+02 0.014 29.5 19.9 41 265-305 169-215 (475)
398 TIGR02449 conserved hypothetic 41.0 1.2E+02 0.0025 26.5 6.6 37 215-251 15-51 (65)
399 PRK03947 prefoldin subunit alp 41.0 3.2E+02 0.0068 25.8 10.4 34 218-251 91-124 (140)
400 PLN03132 NADH dehydrogenase (u 40.9 16 0.00034 42.0 1.8 11 664-674 202-212 (461)
401 KOG4715 SWI/SNF-related matrix 40.7 1.1E+02 0.0024 34.0 8.0 28 124-151 220-247 (410)
402 KOG4302 Microtubule-associated 40.3 7.7E+02 0.017 30.1 16.6 84 214-305 233-320 (660)
403 KOG2264 Exostosin EXT1L [Signa 40.3 1.2E+02 0.0025 36.4 8.4 45 135-182 96-141 (907)
404 PRK00888 ftsB cell division pr 40.1 65 0.0014 29.8 5.4 34 215-248 28-61 (105)
405 PRK01203 prefoldin subunit alp 39.9 1.9E+02 0.0042 28.2 8.7 34 158-191 3-36 (130)
406 PRK13169 DNA replication intia 39.6 38 0.00083 32.0 3.9 51 237-287 3-55 (110)
407 PRK14151 heat shock protein Gr 39.6 2.7E+02 0.006 28.1 10.1 84 118-201 20-110 (176)
408 PHA03346 US22 family homolog; 39.1 17 0.00037 42.2 1.8 6 492-497 409-414 (520)
409 PRK14954 DNA polymerase III su 39.0 45 0.00098 39.6 5.2 8 406-413 361-368 (620)
410 PF06428 Sec2p: GDP/GTP exchan 39.0 40 0.00087 31.3 3.9 55 223-289 10-65 (100)
411 PF08006 DUF1700: Protein of u 38.9 45 0.00097 32.8 4.4 59 581-639 2-61 (181)
412 KOG0247 Kinesin-like protein [ 38.9 4.2E+02 0.009 32.8 12.8 31 171-201 522-552 (809)
413 PF04625 DEC-1_N: DEC-1 protei 38.6 39 0.00085 37.4 4.3 14 524-537 175-188 (407)
414 KOG4425 Uncharacterized conser 38.6 79 0.0017 37.0 6.7 7 562-568 163-169 (900)
415 PF06810 Phage_GP20: Phage min 38.5 95 0.0021 30.6 6.6 14 279-292 120-133 (155)
416 PF07462 MSP1_C: Merozoite sur 38.5 48 0.001 38.9 5.1 62 287-362 132-197 (574)
417 KOG0992 Uncharacterized conser 38.4 4.8E+02 0.01 31.0 12.8 77 157-233 324-422 (613)
418 TIGR03794 NHPM_micro_HlyD NHPM 38.3 5.9E+02 0.013 28.2 16.0 26 121-146 92-117 (421)
419 PRK14154 heat shock protein Gr 38.1 3.8E+02 0.0082 28.1 11.0 89 116-204 50-145 (208)
420 PRK13729 conjugal transfer pil 38.0 88 0.0019 36.3 7.1 32 161-192 89-120 (475)
421 PF14817 HAUS5: HAUS augmin-li 37.9 8.1E+02 0.018 29.7 17.5 77 170-246 352-428 (632)
422 PF14932 HAUS-augmin3: HAUS au 37.7 2E+02 0.0043 30.3 9.2 79 213-292 67-145 (256)
423 KOG3397 Acetyltransferases [Ge 37.6 44 0.00094 34.5 4.2 21 380-404 30-50 (225)
424 PF06632 XRCC4: DNA double-str 37.6 2.1E+02 0.0046 31.9 9.7 72 128-199 133-207 (342)
425 PF10224 DUF2205: Predicted co 37.5 1.2E+02 0.0025 27.4 6.4 42 157-198 25-66 (80)
426 PF00170 bZIP_1: bZIP transcri 37.4 1E+02 0.0022 25.6 5.7 23 170-192 27-49 (64)
427 TIGR03319 YmdA_YtgF conserved 37.3 7.4E+02 0.016 29.0 18.8 50 212-261 99-148 (514)
428 PF03915 AIP3: Actin interacti 37.0 1.2E+02 0.0025 34.8 7.8 44 584-628 246-297 (424)
429 PF10224 DUF2205: Predicted co 36.5 1.4E+02 0.0031 26.8 6.7 46 223-287 18-63 (80)
430 PF15294 Leu_zip: Leucine zipp 36.3 5.2E+02 0.011 28.3 12.1 64 121-184 128-205 (278)
431 PF07200 Mod_r: Modifier of ru 36.1 3E+02 0.0064 26.2 9.4 19 285-305 117-135 (150)
432 smart00338 BRLZ basic region l 36.1 98 0.0021 25.7 5.4 36 157-192 28-63 (65)
433 TIGR00293 prefoldin, archaeal 36.1 2.6E+02 0.0057 25.8 8.8 34 214-247 86-119 (126)
434 KOG3859 Septins (P-loop GTPase 35.9 2.8E+02 0.0061 31.0 10.0 62 131-192 329-393 (406)
435 PRK14143 heat shock protein Gr 35.9 3.3E+02 0.0071 29.0 10.4 81 121-201 70-157 (238)
436 PF15456 Uds1: Up-regulated Du 35.8 3.3E+02 0.0072 26.2 9.5 27 157-184 24-50 (124)
437 PRK00106 hypothetical protein; 35.7 8.2E+02 0.018 29.1 20.8 53 209-261 117-169 (535)
438 KOG2893 Zn finger protein [Gen 35.7 54 0.0012 35.2 4.6 11 505-515 197-207 (341)
439 PF05791 Bacillus_HBL: Bacillu 35.5 1.2E+02 0.0026 30.4 6.9 68 119-186 104-180 (184)
440 PF06810 Phage_GP20: Phage min 35.4 2.6E+02 0.0055 27.7 9.0 74 226-308 18-91 (155)
441 PRK12704 phosphodiesterase; Pr 35.4 5.5E+02 0.012 30.1 13.0 8 641-648 484-491 (520)
442 PF04899 MbeD_MobD: MbeD/MobD 35.4 1.5E+02 0.0033 26.0 6.6 44 152-195 24-68 (70)
443 KOG0288 WD40 repeat protein Ti 35.3 7.7E+02 0.017 28.7 14.1 73 214-305 48-120 (459)
444 cd00890 Prefoldin Prefoldin is 35.2 3.5E+02 0.0075 24.6 10.7 32 169-200 6-37 (129)
445 PF06637 PV-1: PV-1 protein (P 35.1 7.6E+02 0.016 28.5 17.8 100 216-320 287-387 (442)
446 KOG2129 Uncharacterized conser 35.1 7.9E+02 0.017 28.7 18.8 68 223-298 248-315 (552)
447 smart00338 BRLZ basic region l 35.1 88 0.0019 26.0 5.0 29 213-241 32-60 (65)
448 KOG1003 Actin filament-coating 35.0 5.6E+02 0.012 27.0 16.9 53 214-271 123-175 (205)
449 PF10267 Tmemb_cc2: Predicted 34.9 4.8E+02 0.01 29.8 12.1 67 118-184 212-291 (395)
450 PRK13169 DNA replication intia 34.5 1.5E+02 0.0033 28.0 7.0 44 157-200 10-53 (110)
451 PF14988 DUF4515: Domain of un 34.4 5.4E+02 0.012 26.6 18.9 44 157-200 20-64 (206)
452 KOG4572 Predicted DNA-binding 34.3 1.1E+03 0.023 30.0 17.2 75 213-298 956-1032(1424)
453 PRK10698 phage shock protein P 34.1 5.5E+02 0.012 26.6 18.6 12 278-289 191-202 (222)
454 COG1729 Uncharacterized protei 34.0 51 0.0011 35.4 4.2 43 211-254 60-102 (262)
455 KOG0579 Ste20-like serine/thre 34.0 1E+03 0.022 29.7 20.4 85 214-301 1002-1113(1187)
456 PF06008 Laminin_I: Laminin Do 33.9 5.7E+02 0.012 26.7 15.4 25 225-249 175-199 (264)
457 PRK06568 F0F1 ATP synthase sub 33.9 4.9E+02 0.011 25.9 11.7 37 133-169 29-70 (154)
458 PF05082 Rop-like: Rop-like; 33.8 3.3E+02 0.0071 23.9 8.6 59 125-183 2-65 (66)
459 PF12777 MT: Microtubule-bindi 33.8 4.4E+02 0.0096 28.8 11.4 10 356-365 153-162 (344)
460 PF09738 DUF2051: Double stran 33.4 6.4E+02 0.014 27.8 12.4 121 169-301 112-238 (302)
461 PRK14127 cell division protein 33.2 1.1E+02 0.0024 29.0 5.8 60 164-223 32-101 (109)
462 PF14782 BBS2_C: Ciliary BBSom 33.2 4.1E+02 0.009 30.5 11.3 32 169-200 307-338 (431)
463 PF03999 MAP65_ASE1: Microtubu 33.1 31 0.00068 40.5 2.7 27 294-323 344-371 (619)
464 TIGR03752 conj_TIGR03752 integ 33.0 3.2E+02 0.0069 31.9 10.4 6 300-305 172-177 (472)
465 PF03112 DUF244: Uncharacteriz 32.9 2.9E+02 0.0064 27.8 8.8 73 127-199 23-107 (158)
466 KOG2236 Uncharacterized conser 32.9 39 0.00085 38.9 3.3 10 291-300 265-274 (483)
467 COG0497 RecN ATPase involved i 32.5 9.4E+02 0.02 28.8 17.8 51 265-315 329-387 (557)
468 PLN02939 transferase, transfer 32.3 1.2E+03 0.026 29.9 19.3 37 45-81 39-79 (977)
469 KOG4005 Transcription factor X 32.3 6.1E+02 0.013 27.6 11.5 139 157-308 72-229 (292)
470 KOG0992 Uncharacterized conser 32.2 9.5E+02 0.021 28.7 16.8 66 219-299 344-409 (613)
471 PF00170 bZIP_1: bZIP transcri 32.1 1.1E+02 0.0024 25.3 5.2 32 214-245 26-57 (64)
472 KOG2891 Surface glycoprotein [ 32.1 7.5E+02 0.016 27.5 13.2 15 221-235 387-401 (445)
473 PF02583 Trns_repr_metal: Meta 32.1 81 0.0018 28.0 4.5 65 234-312 1-65 (85)
474 PF12312 NeA_P2: Nepovirus sub 31.9 26 0.00055 36.6 1.5 14 497-510 196-209 (258)
475 PF14916 CCDC92: Coiled-coil d 31.8 55 0.0012 28.1 3.2 25 213-237 20-44 (60)
476 TIGR02894 DNA_bind_RsfA transc 31.8 86 0.0019 31.6 5.1 38 217-254 107-144 (161)
477 PTZ00446 vacuolar sorting prot 31.7 6E+02 0.013 26.3 14.8 109 127-235 29-151 (191)
478 COG5509 Uncharacterized small 31.7 60 0.0013 28.1 3.4 23 171-193 27-49 (65)
479 PHA03282 envelope glycoprotein 31.5 59 0.0013 37.8 4.4 40 475-514 161-205 (540)
480 KOG4438 Centromere-associated 31.4 8.9E+02 0.019 28.2 13.9 139 134-285 175-323 (446)
481 smart00340 HALZ homeobox assoc 31.2 85 0.0019 25.5 4.0 31 169-199 5-35 (44)
482 PF06367 Drf_FH3: Diaphanous F 31.0 91 0.002 30.6 5.2 47 266-315 73-120 (197)
483 TIGR00293 prefoldin, archaeal 31.0 4.3E+02 0.0092 24.4 9.4 82 120-201 1-125 (126)
484 PRK14950 DNA polymerase III su 30.9 1.1E+02 0.0024 35.7 6.7 70 468-537 402-477 (585)
485 KOG0994 Extracellular matrix g 30.9 1.4E+03 0.03 30.3 18.3 148 127-286 1593-1749(1758)
486 PF15188 CCDC-167: Coiled-coil 30.7 2.6E+02 0.0056 25.6 7.5 65 123-187 3-68 (85)
487 PF11180 DUF2968: Protein of u 30.7 6E+02 0.013 26.5 10.9 85 162-246 91-186 (192)
488 KOG4603 TBP-1 interacting prot 30.6 2.8E+02 0.0062 28.6 8.5 65 123-190 77-144 (201)
489 PF07174 FAP: Fibronectin-atta 30.6 1.2E+02 0.0027 33.0 6.3 58 468-525 39-104 (297)
490 PRK14954 DNA polymerase III su 30.5 55 0.0012 38.9 4.1 39 467-505 406-444 (620)
491 PRK10869 recombination and rep 30.5 9.5E+02 0.021 28.2 18.4 182 122-305 168-387 (553)
492 PF04834 Adeno_E3_14_5: Early 30.3 49 0.0011 30.9 2.9 26 483-509 60-85 (97)
493 PF14362 DUF4407: Domain of un 30.1 6.9E+02 0.015 26.5 15.7 140 146-289 98-253 (301)
494 COG1730 GIM5 Predicted prefold 30.1 5.6E+02 0.012 25.4 11.8 95 161-255 5-135 (145)
495 PF09006 Surfac_D-trimer: Lung 30.0 93 0.002 25.6 4.1 26 127-152 1-26 (46)
496 KOG0570 Transcriptional coacti 30.0 31 0.00068 35.9 1.8 19 491-509 5-37 (223)
497 TIGR00634 recN DNA repair prot 29.9 9.5E+02 0.021 28.0 16.0 139 127-277 250-395 (563)
498 KOG4797 Transcriptional regula 29.8 88 0.0019 29.9 4.5 45 120-164 62-109 (123)
499 PRK14011 prefoldin subunit alp 29.5 5.6E+02 0.012 25.2 10.7 90 162-251 3-136 (144)
500 PF05278 PEARLI-4: Arabidopsis 29.5 7.8E+02 0.017 26.9 12.9 107 128-251 149-258 (269)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=1.3e-11 Score=139.98 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=36.2
Q ss_pred hcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 275 HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 275 ~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
..|+.|..|+++|.+|+++|++||++ |+.| +|.|++++
T Consensus 347 i~n~~ldvqlkvfdE~~e~Dl~el~~-rled--ir~emDd~ 384 (1102)
T KOG1924|consen 347 INNDILDVQLKVFDEHKEDDLEELSG-RLED--IRAEMDDA 384 (1102)
T ss_pred hccHHHHHHHHHHhhhhhhhHHHHHh-HHHh--hhhhhccH
Confidence 48999999999999999999999999 9999 88999988
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=8.9e-07 Score=101.81 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=17.6
Q ss_pred hhhhhhhhhHhhhccCcCCCCCcHHHHHHHHHhh
Q 005743 643 FGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSL 676 (679)
Q Consensus 643 ~lY~~L~~l~~e~s~f~d~p~~pc~~aL~km~sl 676 (679)
.+-..++.|+..+.+|+..+ .--+...-||-++
T Consensus 905 ~m~~~ik~Le~dlk~~~~~~-~e~dkF~ekM~~F 937 (1102)
T KOG1924|consen 905 QMENQIKKLERDLKNFKIAG-NEHDKFVEKMTSF 937 (1102)
T ss_pred HHHHHHHHHHHHHHhcCCCC-cchhhHHHHhhHH
Confidence 34455666777777776542 2234445555444
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.50 E-value=0.005 Score=72.20 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLE 182 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------------KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLE 182 (679)
-++.||.+||.-++.....|..|..++.-+ +|.|. +.+|.+..+.....+-.|.+++...+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998888888888775544 22222 45555555566667888899999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhh---------h--c-cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 183 DEKTSLSEQLAALSVILERKNDNKNAI---------N--M-GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 183 aE~~rLq~qv~e~~~~~~Q~ee~~k~d---------~--e-~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.....|+.|+.+-.+.+.++++...+- + | ..++.++||.|+..||+..+..+++++.|...+....
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888776654442 1 1 1378899999999999999999999999888775443
No 4
>PRK11637 AmiB activator; Provisional
Probab=97.24 E-value=0.036 Score=60.95 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+...+|+.++..+..++.+-..++.++.+. ...+. |..++.+|.....+|..++.+|..|+.+...+++++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555555544444 11112 44444444444445555555555555554444444443
No 5
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.21 E-value=0.014 Score=58.96 Aligned_cols=122 Identities=25% Similarity=0.337 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
+..|++.|+..+.+|++.-.+|..+.... +||-. |..||.+...-.++.+.|+.++..|..++..|+-||-++-.
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47899999999999999999999888888 77766 77888888888889999999999999999999999987777
Q ss_pred HHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 198 ILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 198 ~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
+.-|....+- +....+.+|..=|+|.|.++-+|-.+++.|-..|..+
T Consensus 145 l~~~~da~l~---e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 145 LICQRDAILS---ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7665432211 1247788999999999999999999999998888554
No 6
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.92 E-value=0.11 Score=58.01 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHH--HHHHHHHHHhhhh
Q 005743 265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL--RWVNSCLRDELQN 314 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvyl--RwiNacLR~EL~d 314 (679)
..+..+..+......|..+++.|+..-....++|-.+ +|.+ ++.+..+
T Consensus 348 ~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~--~~~~~~~ 397 (562)
T PHA02562 348 TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK--IVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH--HHHHHHH
Confidence 3445555556666677777777766655555555533 6665 4444433
No 7
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.82 E-value=0.059 Score=57.94 Aligned_cols=143 Identities=16% Similarity=0.254 Sum_probs=102.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-------KEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
......-++.|+..++.|++.-..|..|...+ .|+|. |.+-=+||...+.+|..|...|+.-..++.+.|+
T Consensus 155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33445678999999999999999998877666 44444 7788888888888999999988888888888888
Q ss_pred HHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHH
Q 005743 191 QLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEA 270 (679)
Q Consensus 191 qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~ 270 (679)
+|..+..-.- +.+.+++.+-.|-+||+.....-..--+.|+..|...+.+++.+. .|...+++|+
T Consensus 235 EIt~Llsqiv----------dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~-----~mL~EaQEEl 299 (306)
T PF04849_consen 235 EITSLLSQIV----------DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM-----AMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHH----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 8877653221 235666777777777776665555555555555555555554332 2556778999
Q ss_pred HHhhhcC
Q 005743 271 LVLRHTN 277 (679)
Q Consensus 271 ~~LR~~N 277 (679)
..||..|
T Consensus 300 k~lR~~~ 306 (306)
T PF04849_consen 300 KTLRKRT 306 (306)
T ss_pred HHhhCCC
Confidence 9888764
No 8
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=96.67 E-value=0.00089 Score=75.13 Aligned_cols=28 Identities=29% Similarity=0.473 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 005743 470 RVPNPPPRPSCGISGGTKEERQAQIPQPPPL 500 (679)
Q Consensus 470 rvp~PPP~ps~~~~~~~~~~~~~gvpPppP~ 500 (679)
.+|.|||.|+..+ .++.-.+|||||||-
T Consensus 228 ~~P~~P~~P~~~P---~~~~L~~GvPPPPP~ 255 (817)
T KOG1925|consen 228 KEPLIPASPKELP---TRDFLLSGVPPPPPK 255 (817)
T ss_pred CCCCCCCChhccC---CchhhhcCCCCCCCC
Confidence 4566666555532 335667888887665
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.64 E-value=0.26 Score=58.82 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAEL 148 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~EL 148 (679)
+..++..++..+..++.+-..++.++
T Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1179)
T TIGR02168 710 LEEELEQLRKELEELSRQISALRKDL 735 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444444444443333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.62 E-value=0.33 Score=57.94 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAEL 148 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~EL 148 (679)
.+..++..++..+..++..-..++.++
T Consensus 688 ~l~~~l~~~~~~~~~~~~~l~~l~~~~ 714 (1179)
T TIGR02168 688 ELEEKIAELEKALAELRKELEELEEEL 714 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555544444443
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.62 E-value=0.44 Score=49.82 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-HHH
Q 005743 262 IISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YLR 302 (679)
Q Consensus 262 ~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-ylR 302 (679)
.|..++.+...||........+++.|...+-.-=-|+. |++
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34456666666666666666666666666655555555 543
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.59 E-value=0.24 Score=61.19 Aligned_cols=88 Identities=23% Similarity=0.237 Sum_probs=43.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH--HHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~--~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
+.....+..++.++.....+++.+...|...++..+..+..+....+.- .+..+.++...++..-+++..+|..+...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (1163)
T COG1196 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666655554443321110 11233334443444444555555555555
Q ss_pred hhchHHHHHH
Q 005743 291 RLNEVEELAY 300 (679)
Q Consensus 291 Re~dvEELvy 300 (679)
...-...+..
T Consensus 455 ~~~~~~~~~~ 464 (1163)
T COG1196 455 LEELRDRLKE 464 (1163)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.58 E-value=0.11 Score=61.39 Aligned_cols=163 Identities=24% Similarity=0.313 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhchh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH-----------
Q 005743 129 SLRSLLQESKEREFKLQAELSEW---KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL----------- 192 (679)
Q Consensus 129 ~Lr~~V~eLqERE~kLE~ELlEy---KEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv----------- 192 (679)
.|+.-|..|+.+-.-||..+.++ ++++. +..||++|..+...--.|..++...+...+.-++..
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 34555667777777777777777 66666 999999999888766666666655544433333222
Q ss_pred ---HHHHHHHHH--Hhhhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhcc--chhHH
Q 005743 193 ---AALSVILER--KNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA--SESDI 262 (679)
Q Consensus 193 ---~e~~~~~~Q--~ee~~k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~--~Es~~ 262 (679)
.+.++.+.+ +.|..+...|+ +..+..||.|+.+||..+++=+.+-..|.-=|.++|.+..-|-+. -|.
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt-- 614 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET-- 614 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 222222222 22222222333 578899999999999887666666667777777777655444221 122
Q ss_pred HHHHHHH-HHHhhhcChHHHHHHHHHhhh---hhchHHHHH
Q 005743 263 ISKIKAE-ALVLRHTNEDLSKQVEGLQMS---RLNEVEELA 299 (679)
Q Consensus 263 Va~~~eE-~~~LR~~Ne~L~~QlE~l~~~---Re~dvEELv 299 (679)
+|+-| ..+| .+-..|||+++.. |+.+|.||=
T Consensus 615 --riKldLfsaL----g~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 615 --RIKLDLFSAL----GDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred --HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 2333 2556777776655 555555554
No 14
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.58 E-value=0.065 Score=64.60 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 005743 129 SLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA 208 (679)
Q Consensus 129 ~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~ 208 (679)
+|.-++..|+.+-++|+.||.|-=| -+.+|++.|....+|++.|.+.+.-+..+..+...-..+...+++|.+-..
T Consensus 174 hL~velAdle~kir~LrqElEEK~e--nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d-- 249 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFE--NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD-- 249 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC--
Confidence 3444444444555555555544321 177888888888899999999999998888888888888887777533221
Q ss_pred hhccchhhhhH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743 209 INMGSSSSQNL---EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (679)
Q Consensus 209 d~e~e~~l~~L---E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE 285 (679)
.--..++.++ -..|+||++-|..|+.+|-=|...|+-.+++-.-+. -|++|+ +.++..+-||..+.-...|++
T Consensus 250 -~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t--leseii-qlkqkl~dm~~erdtdr~kte 325 (1195)
T KOG4643|consen 250 -TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT--LESEII-QLKQKLDDMRSERDTDRHKTE 325 (1195)
T ss_pred -CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC--hHHHHH-HHHHHHHHHHHhhhhHHHHHH
Confidence 0011333333 467888888888888888888888888776642211 255555 455555555544444444444
Q ss_pred HH
Q 005743 286 GL 287 (679)
Q Consensus 286 ~l 287 (679)
.|
T Consensus 326 eL 327 (1195)
T KOG4643|consen 326 EL 327 (1195)
T ss_pred HH
Confidence 33
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.57 E-value=0.2 Score=55.99 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREF 142 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~ 142 (679)
....+|..|+..+..++.+-.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.55 E-value=0.32 Score=58.39 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSE 150 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlE 150 (679)
..++..+...+..+++.-..++.++.+
T Consensus 250 ~~~~~~l~~~l~~~~~~~~~~~~~~~~ 276 (1164)
T TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEE 276 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444444444444443333
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.54 E-value=0.41 Score=57.49 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSE 150 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlE 150 (679)
..+..++..++..+..+++....++.++.+
T Consensus 254 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777666666666666665555
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.48 E-value=0.27 Score=56.66 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=27.0
Q ss_pred hcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 275 HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 275 ~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
+..+-|.+++-.+-.-|+--+.||...|+-++.|+.=|.+.
T Consensus 304 q~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~ 344 (546)
T PF07888_consen 304 QEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA 344 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33445556666666777778888887788777776545444
No 19
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.45 E-value=0.0026 Score=74.27 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHhhc---CCCccchhHHHHHHhhhhhhhhhHh
Q 005743 614 ELGFLVDERAVLKHF---DWPEKKADTLREAAFGYRDLKKLES 653 (679)
Q Consensus 614 eLs~LsDEraVLk~F---~wPEkK~dalReAA~lY~~L~~l~~ 653 (679)
.++.|++|+.++..| +..+.|+..| .++|.-++++.-
T Consensus 503 pme~Ls~edkFml~lskIErle~klatM---~~m~nF~dsv~l 542 (830)
T KOG1923|consen 503 PMENLSEEDKFMLSLSKIERLEEKLATM---EFMGNFPDSVQL 542 (830)
T ss_pred chhhcccchhhhhhhhhhhhhHHHHHHH---HHHHhchhhhhh
Confidence 467788888887777 5666676665 455655555543
No 20
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=96.30 E-value=0.014 Score=53.35 Aligned_cols=82 Identities=24% Similarity=0.227 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhh---------hhhhccchhhhhHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNK---------NAINMGSSSSQNLEMEVVELR 227 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~---------k~d~e~e~~l~~LE~EV~ELR 227 (679)
..||++||+....|...|.++|+-|+.+|+.|..++..|..--....... -+...++..++-.+.++.+|.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998876433211011 111234577899999999999
Q ss_pred HHHHHHHHHHH
Q 005743 228 RLNKELQMEKR 238 (679)
Q Consensus 228 R~NkeLQ~EKr 238 (679)
+...+||.|||
T Consensus 83 ~kv~eLq~ENR 93 (96)
T PF11365_consen 83 GKVMELQYENR 93 (96)
T ss_pred hHHHHHhhccc
Confidence 99999999998
No 21
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.14 E-value=0.79 Score=46.48 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
++=.-|..|+.-|.+++.++...+..+.+. ..|..-|..-+..++.+...|+.++..|.+-+..
T Consensus 24 ~NL~lIksLKeei~emkk~e~~~~k~m~ei----------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~ 87 (201)
T PF13851_consen 24 NNLELIKSLKEEIAEMKKKEERNEKLMAEI----------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888777766665 3344556666666677777777777766655443
Q ss_pred HhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 202 KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 202 ~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
-..+..+-...++.+++|+.|-.-|......|+.|+.+|..|+..+=
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445788889999999999999999999999999988773
No 22
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.13 E-value=0.0085 Score=70.05 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH------
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ------ 191 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q------ 191 (679)
...++..|+..+..|+.....|..++.++ +.+.. +..||+|+.+...|++.|+..+.++..+.......
T Consensus 362 ~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~ 441 (722)
T PF05557_consen 362 LQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence 46777778888888888878888888888 33444 88999999999999999999999988877665432
Q ss_pred ---HHHHHHHHHH------------Hhhh-------hhhhhcc-----------------chhhhhHHHHHHHHHHHHHH
Q 005743 192 ---LAALSVILER------------KNDN-------KNAINMG-----------------SSSSQNLEMEVVELRRLNKE 232 (679)
Q Consensus 192 ---v~e~~~~~~Q------------~ee~-------~k~d~e~-----------------e~~l~~LE~EV~ELRR~Nke 232 (679)
+.++.....+ +++. .....++ ...+..|..++.+|++.+..
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~ 521 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENER 521 (722)
T ss_dssp ----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000 0000 0000000 13455566677777777777
Q ss_pred HHHHHHhhhhhhhh---------hHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 005743 233 LQMEKRNLACKFSS---------MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (679)
Q Consensus 233 LQ~EKreL~~KL~s---------Ae~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~R 291 (679)
|+.++..|..+|.. ...+|=.+..-+.++.....+..+..||.+|++|..+|..+....
T Consensus 522 L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~ 589 (722)
T PF05557_consen 522 LRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGN 589 (722)
T ss_dssp HHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 77777777766664 111222222224444444457999999999999999997776443
No 23
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=96.05 E-value=0.0074 Score=67.04 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=11.5
Q ss_pred hhHHHHHHHhhcccc
Q 005743 525 PQVVEFYHSLMKRDS 539 (679)
Q Consensus 525 P~vvefY~SL~~re~ 539 (679)
..+..+|..|..-||
T Consensus 262 ~~~~AlFaqlNqGe~ 276 (480)
T KOG2675|consen 262 GGRGALFAQLNQGEG 276 (480)
T ss_pred ccHHHHHHHHhccch
Confidence 567789999887654
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=96.04 E-value=0.67 Score=55.10 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
..+.+++.++.+|+....+|+..+.++..+|.....++..+...-..+....+.+++..++..=+.+...++.+...+..
T Consensus 599 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 678 (880)
T PRK02224 599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666554322223334455666665555555555555555544444
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=95.99 E-value=0.52 Score=55.97 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=3.0
Q ss_pred CcCCCCC
Q 005743 658 YKDDPRV 664 (679)
Q Consensus 658 f~d~p~~ 664 (679)
+-|+|..
T Consensus 816 ilDEp~~ 822 (880)
T PRK02224 816 ILDEPTV 822 (880)
T ss_pred EecCCcc
Confidence 3444443
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.92 E-value=1.3 Score=46.61 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=85.8
Q ss_pred HHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH----H-Hhhhhhhhhcc-chhhhhHHHHHHHHHHHHHHHHH
Q 005743 162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE----R-KNDNKNAINMG-SSSSQNLEMEVVELRRLNKELQM 235 (679)
Q Consensus 162 rqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~----Q-~ee~~k~d~e~-e~~l~~LE~EV~ELRR~NkeLQ~ 235 (679)
+.+.....+++.|+.+|..++.+.+.+.+++........ + +-.++..+..+ ..+...||.|+.+|......|+.
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456666666666666666666665554332222 1 23344444444 48899999999999999999999
Q ss_pred HHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (679)
Q Consensus 236 EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv 299 (679)
+.-+|..++...+..++.... .+.+++..+|.....+..|.+.|-..=..++-.+.
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~~--------~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~y 180 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAEA--------RLEEEVAEIREEGQELSSKREELKEKLDPELLSEY 180 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999988765443 44556666666666777777777666555554444
No 27
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.91 E-value=1.1 Score=50.25 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH-------HH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL-------AA 194 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv-------~e 194 (679)
...||..+...|..-+.+..+|+.+|.+ +|. |..+..+|..-.+.+..+.+.|+-++...+.|+.|- ++
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~---~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~ 119 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKS---LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999888865 445 566666666666666666666666665555555544 22
Q ss_pred HHHHHHH------------Hhhhhhhh----------hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 195 LSVILER------------KNDNKNAI----------NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 195 ~~~~~~Q------------~ee~~k~d----------~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
+..+.-+ .+++...+ .++.+.+..|.....+|...-..+.-|+.+|...+..--.+
T Consensus 120 ~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q-- 197 (420)
T COG4942 120 QLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ-- 197 (420)
T ss_pred HHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2222221 12221111 12235566666666666666666666666655443322111
Q ss_pred hhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743 253 SLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (679)
Q Consensus 253 ~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv 299 (679)
++....++.+...+..+++.-...+..-.+||-
T Consensus 198 --------------~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~ 230 (420)
T COG4942 198 --------------QAKLAQLLEERKKTLAQLNSELSADQKKLEELR 230 (420)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444455555666666666655555555554
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=95.86 E-value=0.66 Score=54.92 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.+..-.+.++..++.++.+-..|+..+..+.+.+. +.+++.++.....++..+..++..|+.+...++.++..+....+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~ 238 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777777776666644444 66666666666666666666666666666666655554444443
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.77 E-value=1.1 Score=58.41 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
.++.++..+...+...+++...|+.+..+.
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~ 934 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKRKL 934 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777666666655544
No 30
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.76 E-value=1.2 Score=53.60 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=68.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
+++....+|..-++++.|.-.++.---++....|++.+..+..+.- -++.++.....+++..-..+.|++.+...
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~-----e~~~lq~~~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLI-----ELEELQRTLSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 3456666777777777777777666666777777777765544322 24456677777777777889999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhh
Q 005743 291 RLNEVEELAYLRWVNSCLRDELQN 314 (679)
Q Consensus 291 Re~dvEELvylRwiNacLR~EL~d 314 (679)
|+..+.+++..+-.-+-+|.|+.+
T Consensus 538 KD~~~~~~~~~~~e~~~~~~e~e~ 561 (980)
T KOG0980|consen 538 KDRLAAELVAREEEREALRLEAER 561 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999754212226666644
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.76 E-value=0.69 Score=53.40 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq 189 (679)
|.+|+.+|.....+...|..+...+....+.|.
T Consensus 173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~ 205 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQLKQQQKELTESSEELK 205 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544444443
No 32
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.75 E-value=0.6 Score=57.72 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=52.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhh--ccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA--KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~--~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~R 291 (679)
..++.++-++.+|...+..||..+..|......-++-+.... ...-+++++.+++++..|-..++.+..++..++..|
T Consensus 574 ~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~ 653 (1317)
T KOG0612|consen 574 KQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELK 653 (1317)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445555557777888888888777666554333322221111 112355788899999999888888887777666655
Q ss_pred hchHHHH
Q 005743 292 LNEVEEL 298 (679)
Q Consensus 292 e~dvEEL 298 (679)
....+.+
T Consensus 654 r~~~e~~ 660 (1317)
T KOG0612|consen 654 RENQERI 660 (1317)
T ss_pred HHHHHHH
Confidence 4444433
No 33
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.63 E-value=1.5 Score=46.94 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELS 149 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELl 149 (679)
++..++..|+..+..|+.+...|+.++.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777766666665544
No 34
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.63 E-value=0.49 Score=54.55 Aligned_cols=72 Identities=28% Similarity=0.329 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh------hhchh------HHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743 122 DLFLELDSLRSLLQES-------KEREFKLQAELSEW------KRNPK------VLELERELEAKKIENDEIVRRVGMLE 182 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eL-------qERE~kLE~ELlEy------KEQE~------I~ELqrqL~~k~~Ei~~Lk~kI~sLE 182 (679)
-++.||..++..|.+- +..-.+|+.|+.+| ++++. +.+....|....+++..++..|..|+
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 3466666666666544 33444555566666 21122 45555666666677777777777777
Q ss_pred HHhhhHHHHHH
Q 005743 183 DEKTSLSEQLA 193 (679)
Q Consensus 183 aE~~rLq~qv~ 193 (679)
.+..+|..+..
T Consensus 169 ~e~~~Lk~en~ 179 (546)
T KOG0977|consen 169 DELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHhh
Confidence 77776665553
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.61 E-value=0.58 Score=58.64 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHhhhhhhhhccchhhhhHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-------RKNDNKNAINMGSSSSQNLEMEVVELRRL 229 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~-------Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~ 229 (679)
+.+|+.++.....+++.|...+..++.+...++.++.++-.-.. +-.+.......++..+.+|..++.+++..
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888999988888888888888887777621111 11112222334456666666666666666
Q ss_pred HHHHHHHHHhhhhhhhhhHHHhhhhh
Q 005743 230 NKELQMEKRNLACKFSSMENQLTSLA 255 (679)
Q Consensus 230 NkeLQ~EKreL~~KL~sAe~~~~~~~ 255 (679)
.+++..+-..|..+++.++.....+.
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 66666666666666666666554443
No 36
>PRK11637 AmiB activator; Provisional
Probab=95.51 E-value=2.9 Score=46.33 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=66.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K---RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-K---EQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
..+..+|..+...+..++.+...++.++..+ + ..+. |.+++.+|.....+|..+..+|..++.+...+++.+...
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999888 3 3333 999999999999999999999999999999988888765
Q ss_pred HHHH
Q 005743 196 SVIL 199 (679)
Q Consensus 196 ~~~~ 199 (679)
....
T Consensus 130 lra~ 133 (428)
T PRK11637 130 LDAA 133 (428)
T ss_pred HHHH
Confidence 5433
No 37
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.47 E-value=1.6 Score=54.21 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743 264 SKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 264 a~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
..+..++..++..=++|..++..+.......-.+...
T Consensus 873 ~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666677776666665555554443
No 38
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.46 E-value=0.98 Score=42.63 Aligned_cols=115 Identities=21% Similarity=0.257 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhH-------hHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKK-------IENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~-------~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+..||..|+..+..+..+...+..++... -. ..+.|...+.+. .+|..|+..+..++.+...|+..+..
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q---~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQ---AKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433332 22 334433333222 24445555555555555555444433
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743 195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 195 ~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s 246 (679)
......+.+.. .+..-..|+.|+.++.+...+|..||.=|--+|++
T Consensus 85 a~~~l~~~e~s------w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 85 AKAELEESEAS------WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333222211 23445778999999999999999999988887765
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=95.44 E-value=1.2 Score=52.89 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743 129 SLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (679)
Q Consensus 129 ~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~ 199 (679)
.+......+.+....++.++..+..+-. +.+++.+|.....++..+...+..++.+...+++++.......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l 230 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555533323 5555555555555566666666666666666666665554433
No 40
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.44 E-value=1.4 Score=55.50 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
+.+++.++.++.....+|+.+...+..++...+..+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 41
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.42 E-value=1.3 Score=57.52 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.++.++..++..|.+..++||-++.+|...|+.-....
T Consensus 1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666665554433
No 42
>PLN03188 kinesin-12 family protein; Provisional
Probab=95.42 E-value=0.71 Score=57.45 Aligned_cols=79 Identities=27% Similarity=0.276 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (679)
Q Consensus 220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv 299 (679)
|-|..=||..|+.||.|.|+-+.-..+|=..+-.|-...|..-|| ++-+...-++|+.+-+||+.|...++.++.-|=
T Consensus 1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a--~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~ 1249 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA--QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLN 1249 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666699999999864433333333333332222333333 666677778888999999999999988877665
Q ss_pred H
Q 005743 300 Y 300 (679)
Q Consensus 300 y 300 (679)
+
T Consensus 1250 q 1250 (1320)
T PLN03188 1250 Q 1250 (1320)
T ss_pred H
Confidence 4
No 43
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=95.42 E-value=0.0044 Score=66.50 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhccc
Q 005743 524 APQVVEFYHSLMKRD 538 (679)
Q Consensus 524 aP~vvefY~SL~~re 538 (679)
++.+..+|--|.+-+
T Consensus 259 ~~~~~AlFaeLN~G~ 273 (312)
T PF01213_consen 259 SGGMSALFAELNQGE 273 (312)
T ss_dssp ---------------
T ss_pred cccHHHHHHHHhccC
Confidence 678889999987653
No 44
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=95.34 E-value=0.013 Score=73.87 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=6.6
Q ss_pred HHHHhhccccC
Q 005743 530 FYHSLMKRDSR 540 (679)
Q Consensus 530 fY~SL~~re~~ 540 (679)
|.++|..|.|.
T Consensus 1745 fl~TLHDR~Ge 1755 (2039)
T PRK15319 1745 QMQTLYDREGS 1755 (2039)
T ss_pred hcccHHHcCCc
Confidence 55666667554
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.32 E-value=1.3 Score=51.38 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=61.4
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHhh-----hhchhHHH-HHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 124 FLELDSLRSL-------LQESKEREFKLQAELSEW-----KRNPKVLE-LERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 124 ~~EI~~Lr~~-------V~eLqERE~kLE~ELlEy-----KEQE~I~E-LqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
..||..|... |+.|+.+-.+|+.++-.+ ++-..|.. .+..|.....-|+.-....+.++-+..+|++
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567666654 577777777887777666 33222221 1122222223334444444445555555555
Q ss_pred HHHHHHHHHHHHhh-h------------h--hhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 191 QLAALSVILERKND-N------------K--NAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 191 qv~e~~~~~~Q~ee-~------------~--k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
++.++..-....+. + . ..+.++ ..+++.||.|+..|++.|.+|..+...+...|++.
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55554433332111 0 0 111122 25566666666666666666666666655555544
No 46
>PHA01732 proline-rich protein
Probab=95.32 E-value=0.039 Score=49.67 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=6.6
Q ss_pred cchhHHHHHHHhh
Q 005743 523 RAPQVVEFYHSLM 535 (679)
Q Consensus 523 RaP~vvefY~SL~ 535 (679)
-+|.|.+---.+.
T Consensus 43 ~apki~~~~skrg 55 (94)
T PHA01732 43 EAPKIREAQSKRG 55 (94)
T ss_pred chhHHHHHHHHHH
Confidence 4566665444333
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.32 E-value=1 Score=43.50 Aligned_cols=96 Identities=28% Similarity=0.265 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
+++|+.++...-.+|.-|..++..|+.+-..+++++.+.-...+........-..+..+++-||.++.+.....++....
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555567777777777788777777777777665555322111111123466666676666666666666666
Q ss_pred HHhhhhhhhhhHHHhh
Q 005743 237 KRNLACKFSSMENQLT 252 (679)
Q Consensus 237 KreL~~KL~sAe~~~~ 252 (679)
.++.-++.+..+-++.
T Consensus 103 l~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 103 LREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 6665555555554443
No 48
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.22 E-value=1 Score=49.00 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------------KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
...|-+.++.|++.|++|-..|.....++ +++.. +.+...+...-..|++.|.+++.-++-
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999988888755444 13333 556666666666799999999999999
Q ss_pred HhhhHHHHHHHHHHH
Q 005743 184 EKTSLSEQLAALSVI 198 (679)
Q Consensus 184 E~~rLq~qv~e~~~~ 198 (679)
+++-|.++++.....
T Consensus 101 D~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 101 DIKLLREKLARQRVG 115 (319)
T ss_pred hHHHHHHHHHhhhhh
Confidence 999999888876443
No 49
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.17 E-value=0.025 Score=66.44 Aligned_cols=45 Identities=29% Similarity=0.226 Sum_probs=28.2
Q ss_pred ccccccccccccchhccccc-----CCCC-----CCCCCCccccccccCCCCcch
Q 005743 79 NSIVASHSRVKRSLIGDLAC-----SMNP-----AQVHPNSYQTHRRQSSGSRDL 123 (679)
Q Consensus 79 n~~~~~~~r~~~~l~~dl~~-----~~~~-----~~~~~~~~~~~r~~~~~~~~~ 123 (679)
|++...+.|.+-++.|.|.+ |+.+ +|+-.+.++..|||.+.|.-+
T Consensus 26 ~S~~~~n~rtktsvl~~lasic~v~gg~E~~~~a~~~f~~v~qe~~rf~~lm~~~ 80 (830)
T KOG1923|consen 26 NSSKHTNLRTKTSVLGSLASICYVIGGSEQSWPAAPVFSKVNQEPRRFNTLMYVH 80 (830)
T ss_pred HhhccCCcchHHHHHHHHHHHHHHhcCceeecccCcchhhhhcCccccccccccc
Confidence 77778888888888777765 2211 333344455777777766544
No 50
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.14 E-value=2.3 Score=46.19 Aligned_cols=115 Identities=16% Similarity=0.225 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhh--hc---cchhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAI--NM---GSSSSQNLEMEVVELRRLNKELQMEKRNLA 241 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q---~ee~~k~d--~e---~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~ 241 (679)
.++.|..++..||.||..|..++..+..-..+ ++..+-.| .+ ....+..|..|++.-..-+.+.|.|...|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999888744442 22222222 22 236677777777777777777777777777
Q ss_pred hhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 242 CKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 242 ~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
-++-..|.++-.+. .|++.. ..-...-+.....|..++..|++
T Consensus 241 sqivdlQ~r~k~~~--~EnEeL---~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 241 SQIVDLQQRCKQLA--AENEEL---QQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHHHHHHHHHHh--hhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766554432 243322 22222333444455555555543
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.04 E-value=2.2 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
|...|...+..++.+...|..++++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333333333
No 52
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.98 E-value=1.3 Score=48.07 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhh-
Q 005743 128 DSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNK- 206 (679)
Q Consensus 128 ~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~- 206 (679)
+.|+..|.+|+..-..| ..+++.++.+...|+.+++.|.+..+.+....+|++|..
T Consensus 23 ~~l~~~~~sL~qen~~L-----------------------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is 79 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVL-----------------------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS 79 (310)
T ss_pred HHHHHHHHHHHHHhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777654444 456777888888999999999988888888888877742
Q ss_pred ----hhhhcc--------chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhccc---hhHHHHHHHHHH
Q 005743 207 ----NAINMG--------SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ-LTSLAKAS---ESDIISKIKAEA 270 (679)
Q Consensus 207 ----k~d~e~--------e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~-~~~~~~~~---Es~~Va~~~eE~ 270 (679)
|+-..+ ..-.++=|.-...|-|...+|+.||-+|...|..=+.. +..|..-. +.+.+ ....+.
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~-~~q~~l 158 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS-AKQEEL 158 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHH
Confidence 221111 13334445667788999999999999999999885522 22222110 11221 233445
Q ss_pred HHhhhcChHHHHHHHHHhhhhhchHHHHHHH
Q 005743 271 LVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301 (679)
Q Consensus 271 ~~LR~~Ne~L~~QlE~l~~~Re~dvEELvyl 301 (679)
..||.+--+|-..||+ +.|-||..
T Consensus 159 e~Lr~EKVdlEn~LE~-------EQE~lvN~ 182 (310)
T PF09755_consen 159 ERLRREKVDLENTLEQ-------EQEALVNR 182 (310)
T ss_pred HHHHHHHHhHHHHHHH-------HHHHHHHH
Confidence 5666655555555554 44556654
No 53
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=94.74 E-value=0.1 Score=54.80 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=16.8
Q ss_pred ccchhhhhhccCCCCCccccCCCCC
Q 005743 381 VLDKTWVQLEEGRSPRRRHSISGSN 405 (679)
Q Consensus 381 ~~~~~~~~~~~~~sp~r~~~~~~~~ 405 (679)
|-|=.||-..++.+-.|..+.-.++
T Consensus 56 lADv~wva~de~~~~~r~R~~~~~~ 80 (253)
T PF05308_consen 56 LADVLWVANDEEESYARFRSEVRPN 80 (253)
T ss_pred hhhhcceecccccccceeecccccc
Confidence 6678888888888777665443333
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.59 E-value=1.8 Score=53.30 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=106.0
Q ss_pred HHHHHHHHHhh-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH----HHHHHH----HHhhhhhhh--
Q 005743 141 EFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA----LSVILE----RKNDNKNAI-- 209 (679)
Q Consensus 141 E~kLE~ELlEy-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e----~~~~~~----Q~ee~~k~d-- 209 (679)
+..|.....+. +-||.+.+|+..++.+-..+..+.+++...|++...+.+.+-. +..+++ ...++..-+
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 5566677888888888888888888888888887777655532 222222 011111112
Q ss_pred -hccchhhhhHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 210 -NMGSSSSQNLEMEVVELRRLNKELQMEK-RNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 210 -~e~e~~l~~LE~EV~ELRR~NkeLQ~EK-reL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
.+++..++++-.++..|++....++.+- .++..+++..|..+..|.. -|+++++..+.||.+-.++...+..-
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~-----evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK-----EVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2335778888888888999888888887 8888888888888877655 25577888888888777888777777
Q ss_pred hhhhhchHHHHHHH
Q 005743 288 QMSRLNEVEELAYL 301 (679)
Q Consensus 288 ~~~Re~dvEELvyl 301 (679)
++.++.--.++..+
T Consensus 435 ~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 435 EEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666654
No 55
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.53 E-value=3 Score=47.18 Aligned_cols=110 Identities=24% Similarity=0.223 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh---------hhhh---------hccchhh-------hhHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN---------KNAI---------NMGSSSS-------QNLEMEV 223 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~---------~k~d---------~e~e~~l-------~~LE~EV 223 (679)
-++..|..+|-.|+.++.+|...++.+-....+..+. ..++ ..+.++| ..-+-=+
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi 376 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4889999999999999999999988877666531110 0000 0011111 1222235
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 224 VELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 224 ~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
+|||+....||+.|-+++.--- ..++.-+..+..|...||+.|-.|..|=+.++.
T Consensus 377 eelrkelehlr~~kl~~a~p~r-----------grsSaRe~eleqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVLANPVR-----------GRSSAREIELEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcccc-----------CchhHHHHHHHHHHHHhccccchhhhhhhhhhh
Confidence 6777777777776666541100 122333345667777787777777777665554
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.32 E-value=3.4 Score=51.01 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH----HHHHHH----hhhhhhhhccc---hhhhhHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS----VILERK----NDNKNAINMGS---SSSQNLEMEVVE 225 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~----~~~~Q~----ee~~k~d~e~e---~~l~~LE~EV~E 225 (679)
|-+-++||.....+|.....++..|+.+.+..+..+.++. .+.+|. .+.-.+|.|++ +.+.++--|+.+
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666666666555555443 111111 11122233332 555555555555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhc
Q 005743 226 LRRLNKELQMEKRNLACKFSSMENQLTSLAK 256 (679)
Q Consensus 226 LRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~ 256 (679)
+.-.-.+-+-.-+.+...++..+.+|+-+.+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~ 386 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEK 386 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566666666555554433
No 57
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.27 E-value=0.062 Score=60.82 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=19.0
Q ss_pred cchhHHHHhhcCCCccccccccccchhccchhh
Q 005743 354 RRLSFIKKFKKWPIASEEMSNLECQDNVLDKTW 386 (679)
Q Consensus 354 Kk~~li~KLKkW~~~ked~~~~~~~~~~~~~~~ 386 (679)
.+.+...++||=-.++.|.++-..+-.+-.-.|
T Consensus 218 d~~~~~~~~kksk~tk~disaPtnf~h~~hVgw 250 (569)
T KOG3671|consen 218 DENKSGVYDKKSKITKADISAPTNFPHIPHVGW 250 (569)
T ss_pred hhhcccccccccccccccCCCCCCCccccccCC
Confidence 334444477777788888776554432333344
No 58
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.24 E-value=1.9 Score=50.98 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=38.8
Q ss_pred hhhhhHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHH
Q 005743 214 SSSQNLEMEVVELRRLN-----------KELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSK 282 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~N-----------keLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~ 282 (679)
.+-..|-..|.+||.+. ..+-+|+++|-+||++||-+.. +-+..+-.+-.-|+.
T Consensus 580 ~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e---------------el~q~v~~TTrPLlR 644 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE---------------ELIQQVPETTRPLLR 644 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhccccccHHHH
Confidence 33445555566666443 4566788899999999885542 333344455567888
Q ss_pred HHHHHhh
Q 005743 283 QVEGLQM 289 (679)
Q Consensus 283 QlE~l~~ 289 (679)
|||-|+.
T Consensus 645 QIE~lQ~ 651 (961)
T KOG4673|consen 645 QIEALQE 651 (961)
T ss_pred HHHHHHH
Confidence 8887764
No 59
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.19 E-value=0.46 Score=47.35 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
+.+|+.++.|+.+.+..|+.|.--|-..+..+|
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e 164 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLE 164 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444444
No 60
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.18 E-value=0.072 Score=60.33 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=5.2
Q ss_pred hhhhhhHHhhh
Q 005743 556 NVRSSMIGEIE 566 (679)
Q Consensus 556 ~~r~~migEi~ 566 (679)
++|.++++-|-
T Consensus 493 dgR~~LmaqIR 503 (569)
T KOG3671|consen 493 DGRDALMAQIR 503 (569)
T ss_pred ccHHHHHHHHH
Confidence 34545544443
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.12 E-value=5.2 Score=48.85 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
+..+.+-.|++-++-.+.+|.-.+..|..+++.||+.|.-+..-.+..+.| ++=.+.|-..|=.|.+.|+.|
T Consensus 396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA--E~MV~qLtdknlnlEekVklL 467 (1243)
T KOG0971|consen 396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA--EEMVEQLTDKNLNLEEKVKLL 467 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHhhccCHHHHHHHH
Confidence 444555555555666666677777778888888888777665444433333 333344444444444444433
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.11 E-value=1.7 Score=51.09 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQ---AELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE---~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
.+..|+..|+.-+..|.++=...- ..|... .+++. +.||++.|+....+......-++.|++++....-.|++..
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 355677777777766665433221 233333 67777 8888888877665554455555566655544444444433
Q ss_pred HHHH
Q 005743 197 VILE 200 (679)
Q Consensus 197 ~~~~ 200 (679)
.++.
T Consensus 164 eLK~ 167 (617)
T PF15070_consen 164 ELKE 167 (617)
T ss_pred HHHH
Confidence 3333
No 63
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.97 E-value=3.2 Score=42.44 Aligned_cols=83 Identities=25% Similarity=0.292 Sum_probs=63.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----hchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K-----RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-K-----EQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
.|....|..++..+..+++....|+.++.+. . ....+.+++.++.....++..|+..|..+..+.+..++.+.+
T Consensus 16 ~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 16 NCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556679999999999999999999988887 3 333377888888888888888888888888888777777777
Q ss_pred HHHHHHHHh
Q 005743 195 LSVILERKN 203 (679)
Q Consensus 195 ~~~~~~Q~e 203 (679)
......+..
T Consensus 96 ~~~~l~~~~ 104 (302)
T PF10186_consen 96 LRESLEQRR 104 (302)
T ss_pred HHHHHHHHH
Confidence 665555433
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.90 E-value=3.5 Score=39.92 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=35.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
...++++.++.+.++-|..+.|+.+...+-.|++..+.++..
T Consensus 99 ~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 99 TTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 347788888999999999999999999999999888877654
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.87 E-value=3.9 Score=50.90 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=45.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
..+.+||-++..++...+.|-.+-..+..+..--+..+.. +++.+. .+++++..++..=+++.+++..|..+|-+
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e----~~~~~~-E~k~~~~~~k~~~e~i~k~~~~lk~~rId 1016 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKE----AEESLK-EIKKELRDLKSELENIKKSENELKAERID 1016 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555544444444444444444433333322 233333 67888888888888888888888887766
Q ss_pred hHHHHH
Q 005743 294 EVEELA 299 (679)
Q Consensus 294 dvEELv 299 (679)
++-.+
T Consensus 1017 -~~~K~ 1021 (1293)
T KOG0996|consen 1017 -IENKL 1021 (1293)
T ss_pred -HHHHH
Confidence 44333
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.87 E-value=9.9 Score=44.69 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHh---hhhhchHHHHHHH
Q 005743 265 KIKAEALVLRHTNEDLSKQVEGLQ---MSRLNEVEELAYL 301 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE~l~---~~Re~dvEELvyl 301 (679)
|=++|+++.-.....|.++++.+. ..=|+-++|+||.
T Consensus 502 KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifr 541 (594)
T PF05667_consen 502 KQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFR 541 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445677766666668888887765 4557888999985
No 67
>PRK09039 hypothetical protein; Validated
Probab=93.85 E-value=1.8 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRV 178 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI 178 (679)
|.+|+.++.....+-..|....
T Consensus 83 l~~l~~~l~~a~~~r~~Le~~~ 104 (343)
T PRK09039 83 VANLRASLSAAEAERSRLQALL 104 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444333343333
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.84 E-value=3.3 Score=50.46 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=23.4
Q ss_pred hhhhccchhhhhHHHHHHHH---HHHHHHHHHHHHhhh
Q 005743 207 NAINMGSSSSQNLEMEVVEL---RRLNKELQMEKRNLA 241 (679)
Q Consensus 207 k~d~e~e~~l~~LE~EV~EL---RR~NkeLQ~EKreL~ 241 (679)
.+..++|.+++.||.+|.+| +..|.+|++-+++|.
T Consensus 455 dknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele 492 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE 492 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466788999999887654 555666666665543
No 69
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.50 E-value=2.4 Score=48.72 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW---------KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
..-.++|+..+..++++-..|..+...| +||-.+-.+.++|.--++++..+...|.++-.++.+++++...
T Consensus 158 ~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk 237 (596)
T KOG4360|consen 158 RELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK 237 (596)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999988888877777 4444455666666665555555555555544444444444433
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.42 E-value=3.8 Score=41.96 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
.|...|++.|..++..+.+|.+.+.
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~ 46 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEIT 46 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 71
>PRK09039 hypothetical protein; Validated
Probab=93.31 E-value=9.4 Score=41.74 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.+|..|..++..++++..+|+.+.+....... ++..+-...+..+..+..+..|.++....|+.|...|..+|.+.|
T Consensus 81 ~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~---~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 81 DSVANLRASLSAAEAERSRLQALLAELAGAGA---AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777777777776653221100 000111112355555566666666666666666666666666666
Q ss_pred HHhhh
Q 005743 249 NQLTS 253 (679)
Q Consensus 249 ~~~~~ 253 (679)
+.|..
T Consensus 158 ~~L~~ 162 (343)
T PRK09039 158 AALDA 162 (343)
T ss_pred HHHHH
Confidence 55544
No 72
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.31 E-value=2.5 Score=43.20 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEWKRN-PK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ-E~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
..=|+.....+.-+.-|..+|+. |..|... =. ...|+..+..-..++..++.+|..+..+.+..|.++..-....+
T Consensus 103 ~~al~na~a~lehq~~R~~NLeL-l~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le 181 (221)
T PF05700_consen 103 KEALDNAYAQLEHQRLRLENLEL-LSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLE 181 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45577777777888888888865 4455332 22 66777777777778888888888888888888888776555444
Q ss_pred H-HhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 005743 201 R-KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235 (679)
Q Consensus 201 Q-~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~ 235 (679)
+ =.+...+-.+++..+..||.||.+||+.-.+++.
T Consensus 182 ~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 182 QRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 3555555566778888888888888877666654
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.25 E-value=7.8 Score=39.90 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhh
Q 005743 304 VNSCLRDELQNS 315 (679)
Q Consensus 304 iNacLR~EL~d~ 315 (679)
-..|++.||+..
T Consensus 219 ~~~~~~~eld~~ 230 (237)
T PF00261_consen 219 KYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334566666554
No 74
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.95 E-value=6.1 Score=51.36 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHH----HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVL----ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI 198 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~----ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~ 198 (679)
..|+..|+..+..+.....+|..++... .+++.++ |++.|=......+.-++.+|+.|+.++..|.++++.....
T Consensus 79 ~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~ 158 (1822)
T KOG4674|consen 79 RNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKT 158 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666 4555433 3333333333455666667888888888888888765544
Q ss_pred HH
Q 005743 199 LE 200 (679)
Q Consensus 199 ~~ 200 (679)
..
T Consensus 159 ~~ 160 (1822)
T KOG4674|consen 159 LS 160 (1822)
T ss_pred HH
Confidence 33
No 75
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.90 E-value=3.1 Score=42.78 Aligned_cols=146 Identities=21% Similarity=0.160 Sum_probs=84.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-H-------Hhhhhhhhhcc---chhhhhHHHHHHHH
Q 005743 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-R-------KNDNKNAINMG---SSSSQNLEMEVVEL 226 (679)
Q Consensus 158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~-Q-------~ee~~k~d~e~---e~~l~~LE~EV~EL 226 (679)
+|.|..+..+..||--|+-.+..+.++.+....++.++..... + +.+.-....++ ...+..||.|+.+|
T Consensus 20 ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~L 99 (202)
T PF06818_consen 20 KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAEL 99 (202)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHH
Confidence 3444444455555555665555555555555555554433222 1 11111122222 37899999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhhh----ccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-HH
Q 005743 227 RRLNKELQMEKRNLACKFSSMENQLTSLA----KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YL 301 (679)
Q Consensus 227 RR~NkeLQ~EKreL~~KL~sAe~~~~~~~----~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-yl 301 (679)
|.....+...+.+...-..+-++.+.... -.+--..|..+++|...+|..+++-...|+.-+--|..+=+-.+ |.
T Consensus 100 r~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQ 179 (202)
T PF06818_consen 100 REELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQ 179 (202)
T ss_pred HHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988874333333322222222111110 00112246688899999999999988888888888888888887 65
Q ss_pred HH
Q 005743 302 RW 303 (679)
Q Consensus 302 Rw 303 (679)
+=
T Consensus 180 kQ 181 (202)
T PF06818_consen 180 KQ 181 (202)
T ss_pred HH
Confidence 43
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.87 E-value=4.6 Score=51.89 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=24.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
++..+.+++..+.+++....+|+.+...+...++..+...+.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666655555555544443
No 77
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.85 E-value=9.8 Score=41.15 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchh------HHHHHHHHHHhHhHHHHHHH-------HHhhhHHHhhhHHHHHHH
Q 005743 128 DSLRSLLQESKEREFKLQAELSEWKRNPK------VLELERELEAKKIENDEIVR-------RVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 128 ~~Lr~~V~eLqERE~kLE~ELlEyKEQE~------I~ELqrqL~~k~~Ei~~Lk~-------kI~sLEaE~~rLq~qv~e 194 (679)
+.|+..+.-.+.||..++..+-. +++|. +......+.........++. +|..|......|+.|+.-
T Consensus 142 eKlK~l~eQye~rE~~~~~~~k~-keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~ 220 (309)
T PF09728_consen 142 EKLKSLIEQYELREEHFEKLLKQ-KELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNL 220 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667776666554322 33333 33334444445556666666 899999999999999998
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhh
Q 005743 195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR 274 (679)
Q Consensus 195 ~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR 274 (679)
|..=-.+-+.++..- ...-..+-.|+..|...++.|+.|+..+..|-+.+...+.. +-+|...+.
T Consensus 221 Y~~Kf~efq~tL~kS---Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~------------m~eer~~~~ 285 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKS---NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIE------------MAEERQKLE 285 (309)
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHH
Confidence 876555444443222 24455677889999999999999999999999988654422 224444444
Q ss_pred hcChHHHHHHHHHh
Q 005743 275 HTNEDLSKQVEGLQ 288 (679)
Q Consensus 275 ~~Ne~L~~QlE~l~ 288 (679)
..-+.+..|++.|+
T Consensus 286 ~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 286 KELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555543
No 78
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.77 E-value=10 Score=45.14 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=40.7
Q ss_pred hhhhhHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743 214 SSSQNLEMEVV---ELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 214 ~~l~~LE~EV~---ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
..+..+-.|+. +.++++.-||.|+..|-.+|..++ +++..+-.|--.|++|+..+..+...
T Consensus 258 ~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~----------------~l~~~~~~LELeN~~l~tkL~rwE~~ 321 (716)
T KOG4593|consen 258 RALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE----------------KLQSTLLGLELENEDLLTKLQRWERA 321 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------------HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444445555 666777778888877777777665 33455555666677777777766655
Q ss_pred hhc
Q 005743 291 RLN 293 (679)
Q Consensus 291 Re~ 293 (679)
+..
T Consensus 322 ~~~ 324 (716)
T KOG4593|consen 322 DQE 324 (716)
T ss_pred hhh
Confidence 444
No 79
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.64 E-value=12 Score=44.10 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh--------hc-cchhhhhHHHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI--------NM-GSSSSQNLEMEVVELRRL 229 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d--------~e-~e~~l~~LE~EV~ELRR~ 229 (679)
.|+.+...-+.++..+..+|.+|+.-...-+.++-+...-.. ++-+.+.+ .+ .++++..||-|+..||-.
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d-ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD-EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444456666777777776666665555544333211 11122222 11 148899999999998864
Q ss_pred H
Q 005743 230 N 230 (679)
Q Consensus 230 N 230 (679)
.
T Consensus 265 l 265 (629)
T KOG0963|consen 265 L 265 (629)
T ss_pred H
Confidence 3
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.62 E-value=7.3 Score=45.93 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh---hhhchHHHHH
Q 005743 235 MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM---SRLNEVEELA 299 (679)
Q Consensus 235 ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~---~Re~dvEELv 299 (679)
+-+++|..||...+..+..+. +-|+--.+|+..|...++.++.++-+... .-..+-++|.
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~-----e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~ 257 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLK-----EKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELH 257 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554443322 12322346899999988888888877653 2345666666
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.53 E-value=10 Score=45.28 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhh
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNK 206 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~ 206 (679)
|+.|..+.+....=+..+..+|..|++|.++|..-+.....+.++.+|+.
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55554444433333667777888888888888877776666666655554
No 82
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.42 E-value=15 Score=37.91 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchH
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dv 295 (679)
++.||+-....=.....++...+.|..+|..|+.++. .+...+..|-...++|...|......+..--
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae------------~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE------------FAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444555555555554432 3345556566666677777776666555544
Q ss_pred HHH
Q 005743 296 EEL 298 (679)
Q Consensus 296 EEL 298 (679)
.||
T Consensus 225 ~el 227 (237)
T PF00261_consen 225 EEL 227 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 83
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.34 E-value=20 Score=45.10 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
+++.++.....+++.|.-++..++++-..+...+
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555444444443
No 84
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=92.09 E-value=5.6 Score=40.09 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=96.2
Q ss_pred CCCCCccc----cccccCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHH
Q 005743 104 QVHPNSYQ----THRRQSSGSRDLFLELDSLRSLL-QESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDE 173 (679)
Q Consensus 104 ~~~~~~~~----~~r~~~~~~~~~~~EI~~Lr~~V-~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~ 173 (679)
=+||-.|. .-..+.+....-..++..|...+ ..|+.+..+- .-+ | -.++- ..||=||+.+.=.|=-.
T Consensus 8 i~ppr~~~~~~~~~~q~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~-~gI--cpvr~~ly~~~F~ELIRQVTi~C~ERGl 84 (189)
T PF10211_consen 8 ILPPREWEEDGQLWIQFVSSAPATRQDVIQLQEWLDKMLQQRQARE-TGI--CPVREELYSQCFDELIRQVTIDCPERGL 84 (189)
T ss_pred hCCchhhhcCCeeeEeeeCCCCCCHHHHHHHHHHHHHHHHHhcCCc-ccc--cHHHHHHHHHHHHHHHHHHHhCcHHHhH
Confidence 35666663 11224444455677888887777 3344332211 111 2 11122 55777777766655444
Q ss_pred HHHHHhhhHHHhhhHHHHHHHHHHHHHHH-hhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 174 IVRRVGMLEDEKTSLSEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 174 Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~-ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
|=.+|- .+++.-++.|..+.+.. .-+.+.--+.++...+|+.++.+|...+.+|+.+..+|..+++.++....
T Consensus 85 LL~rvr------de~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 85 LLLRVR------DEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444431 11222222222222211 00111111123445788889999999999999999999999999987765
Q ss_pred hhhccchhHHHHHHHHHHHHhhhcChHHHHHHHH
Q 005743 253 SLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (679)
Q Consensus 253 ~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~ 286 (679)
.... .+ ..+..+|+..|+..|..|..|++.
T Consensus 159 e~~~-~~---~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 159 ELRQ-EE---EKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHH-HH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333 12 235579999999999999998875
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.93 E-value=5.6 Score=41.70 Aligned_cols=80 Identities=25% Similarity=0.303 Sum_probs=44.1
Q ss_pred HHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 163 ELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (679)
Q Consensus 163 qL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~ 242 (679)
+|+.-+..+--+--+|-.||.+|..|+.++..+...... .+...-..++.|+.+||+....+..++..|..
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~---------~~~~~~~~ye~el~~lr~~id~~~~eka~l~~ 75 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGE---------EVSRIKEMYEEELRELRRQIDDLSKEKARLEL 75 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---------cCcccccchhhHHHHhHHhhhhHHHHhhHHhh
Confidence 344445566666678889999999999888776554321 11122234555555566665555555555555
Q ss_pred hhhhhHHHh
Q 005743 243 KFSSMENQL 251 (679)
Q Consensus 243 KL~sAe~~~ 251 (679)
.++.+...+
T Consensus 76 e~~~l~~e~ 84 (312)
T PF00038_consen 76 EIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHH
T ss_pred hhhhHHHHH
Confidence 555554443
No 86
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.79 E-value=3.4 Score=42.58 Aligned_cols=72 Identities=29% Similarity=0.336 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
..||-.||..++++...-...+.++... ..... +...+++|+....++..|..+|..|+.+...|.+.++..
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 4688889998888888888888877777 22222 666778888899999999999999999999999999886
No 87
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.75 E-value=16 Score=45.94 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=12.0
Q ss_pred CCcchhHHHHhhcCCCccc
Q 005743 352 GGRRLSFIKKFKKWPIASE 370 (679)
Q Consensus 352 ~sKk~~li~KLKkW~~~ke 370 (679)
.+|=...|.+||.=|+-+.
T Consensus 599 ~~kVl~al~r~kesG~i~G 617 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPG 617 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCc
Confidence 3566677777777665433
No 88
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.70 E-value=25 Score=46.24 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=48.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH----hhhhhhhhhHHHhhhhhccchhH--HHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKR----NLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKr----eL~~KL~sAe~~~~~~~~~~Es~--~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
..+-.||.++.+|+..+-+|..+.. ....++..+-.+++++.+.-++- +...+..-++.+|....-..+++...
T Consensus 965 ~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a 1044 (1822)
T KOG4674|consen 965 KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKA 1044 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544443332 12233444555666655522221 22334444445555555554444444
Q ss_pred hhhh-------hchHHHHHHHHHHHHHHHHhhhhh
Q 005743 288 QMSR-------LNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 288 ~~~R-------e~dvEELvylRwiNacLR~EL~d~ 315 (679)
+... .++..+|..+||..+-+..++-.+
T Consensus 1045 ~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~L 1079 (1822)
T KOG4674|consen 1045 QSKYESELVQHADLTQKLIKLREEFAKCNDELLKL 1079 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 445566666676665545555443
No 89
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=16 Score=44.25 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 005743 125 LELDSLRSLLQESK 138 (679)
Q Consensus 125 ~EI~~Lr~~V~eLq 138 (679)
.||+.....-++|+
T Consensus 393 keie~rEaar~ElE 406 (1118)
T KOG1029|consen 393 KEIERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 55655555555553
No 90
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.50 E-value=15 Score=46.24 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=45.7
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
|..+...+..+|..+...+..++++...+|.+|..+ +..|.+++.++.....++.-....+..|+.+...++.++.+
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 674 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI--NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE 674 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444445677888888888888888888888777665 11144444444444444444455555555555555544443
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.48 E-value=31 Score=42.98 Aligned_cols=125 Identities=20% Similarity=0.248 Sum_probs=74.8
Q ss_pred CCCccccc----cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhchh-HHHHHHHHHHhHhHHHHHHHH
Q 005743 106 HPNSYQTH----RRQSSGSRDLFLELDSLRSLLQESKEREFKLQA---ELSEWKRNPK-VLELERELEAKKIENDEIVRR 177 (679)
Q Consensus 106 ~~~~~~~~----r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~---ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~k 177 (679)
.+|.|+.+ ..+.+..++.-.+|..|.....+|+.....|+. +|...+-+-. ...|+.||..+.-++.++...
T Consensus 651 ~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r 730 (1174)
T KOG0933|consen 651 EGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKR 730 (1174)
T ss_pred cCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677622 234455567778888888887777776666553 4444333333 889999999999888877766
Q ss_pred Hh------------hhHHHhhhHHHHHHHHHHHHHHHhhh-hhhhh-------ccchhhhhHHHHHHHHHHHH
Q 005743 178 VG------------MLEDEKTSLSEQLAALSVILERKNDN-KNAIN-------MGSSSSQNLEMEVVELRRLN 230 (679)
Q Consensus 178 I~------------sLEaE~~rLq~qv~e~~~~~~Q~ee~-~k~d~-------e~e~~l~~LE~EV~ELRR~N 230 (679)
+. .+..+-+.++.++.+...+.++.++. ..++. +-+.++++|+.|+..+.+.+
T Consensus 731 ~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 731 LEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred HhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 53 34444445555555555555543332 22222 22467777777666555443
No 92
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.47 E-value=10 Score=47.06 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
+....+..-..+||+.+..-|.....|..||+....
T Consensus 525 ~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 525 KSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 444455555889999999999999999999988763
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.38 E-value=11 Score=40.39 Aligned_cols=111 Identities=22% Similarity=0.274 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHhhhhh
Q 005743 135 QESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-------RKNDNKN 207 (679)
Q Consensus 135 ~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~-------Q~ee~~k 207 (679)
-.++.+-..+..||-|++|= -+|++.+|. .|++-|+.+..-|++++++|.-++...---.+ |.+.++.
T Consensus 23 ~~ykq~f~~~reEl~EFQeg--SrE~Eaele---sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNEFQEG--SREIEAELE---SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788877322 233333332 34555666666677777777644432111000 1222222
Q ss_pred hhhc-cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 208 AINM-GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 208 ~d~e-~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
.|.- .-.....|-.-|.||-.+|..|+--||.-..-|+.-+++
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr 141 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR 141 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence 2210 012233445566777777777777777544444444433
No 94
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.27 E-value=10 Score=43.95 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=4.9
Q ss_pred cCCcccccc
Q 005743 324 ASSPNTIEE 332 (679)
Q Consensus 324 ~lSpkS~ek 332 (679)
...|.+.++
T Consensus 548 ~vePG~~~r 556 (569)
T PRK04778 548 KVEPGVTKR 556 (569)
T ss_pred hhCCcHHHH
Confidence 355666544
No 95
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.26 E-value=2.7 Score=45.33 Aligned_cols=31 Identities=32% Similarity=0.262 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 221 MEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 221 ~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.+-.+.-+....++.+..++...+++.+.++
T Consensus 92 ~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 92 EEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555444
No 96
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=91.24 E-value=29 Score=39.86 Aligned_cols=79 Identities=27% Similarity=0.289 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHH
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL 298 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEEL 298 (679)
-|-|..=||..|+.||.|.|+-+.-..+|=-.+-.|-...|...|| ++-+....++|+.+-+||+.|...+..++.-|
T Consensus 401 rEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a--~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~ 478 (488)
T PF06548_consen 401 REKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVA--QERAMDAEQENEKAKKQIEKLKRKHKMEISTM 478 (488)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667999999998864444444433333333323443343 67777778888899999999999988877665
Q ss_pred H
Q 005743 299 A 299 (679)
Q Consensus 299 v 299 (679)
-
T Consensus 479 k 479 (488)
T PF06548_consen 479 K 479 (488)
T ss_pred H
Confidence 5
No 97
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.06 E-value=0.064 Score=62.85 Aligned_cols=43 Identities=30% Similarity=0.368 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELE 165 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~ 165 (679)
...++..|+..++.|+++-.+++..+.+| .+++. |.+|+.+..
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~ 284 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENE 284 (713)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777666677666666 33444 555554443
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=16 Score=44.31 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
.+..|-.++.|+...+-.|--|+.+|--+|...++
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 34556666677777777777788888888877664
No 99
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.93 E-value=1.5 Score=43.71 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
+.+|+..+.....+|..|...+..|+.+...|.+.+.+..+.... +..-+-.|-.+..-|...+..|+.|
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----------l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----------LQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555444431 1233455556777778888899999
Q ss_pred HHhhhhhhhhh
Q 005743 237 KRNLACKFSSM 247 (679)
Q Consensus 237 KreL~~KL~sA 247 (679)
|++|..|+=.-
T Consensus 174 n~~Lv~Rwm~~ 184 (194)
T PF08614_consen 174 NRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.89 E-value=5.9 Score=42.67 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHH----HHHHHHHhHhHHHHHHHHHhhhH----HHhhhHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLE----LERELEAKKIENDEIVRRVGMLE----DEKTSLSEQLA 193 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~E----LqrqL~~k~~Ei~~Lk~kI~sLE----aE~~rLq~qv~ 193 (679)
|+=-...|..+...|++.-..|+.+...+.+... +.+ |......-..++..|+..+..++ .+-+.|+++++
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~ 219 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence 4445666777777777777777766666522222 222 22222222223333333332222 22222333332
Q ss_pred HHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHh
Q 005743 194 ALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVL 273 (679)
Q Consensus 194 e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~L 273 (679)
+.....+ .....+.+|+.++.+++....++..++.++...+..++.........|..++. .+++++..|
T Consensus 220 ~~~~~i~----------~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~-~Lk~~~~~L 288 (325)
T PF08317_consen 220 EQKEEIE----------AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK-RLKAKVDAL 288 (325)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHH
Confidence 2221111 01223344444444444444444444444444444555444444455565544 788887776
Q ss_pred hh
Q 005743 274 RH 275 (679)
Q Consensus 274 R~ 275 (679)
-.
T Consensus 289 e~ 290 (325)
T PF08317_consen 289 EK 290 (325)
T ss_pred HH
Confidence 54
No 101
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.66 E-value=11 Score=45.52 Aligned_cols=134 Identities=18% Similarity=0.233 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhchhHHHHHHHHHHhHh-------HHHHHHHHHhhhH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW------------KRNPKVLELERELEAKKI-------ENDEIVRRVGMLE 182 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy------------KEQE~I~ELqrqL~~k~~-------Ei~~Lk~kI~sLE 182 (679)
|+..=|+.|+..+...+.+...|+.++..+ |-+..|..++..+..-.. .++.-..+|+-|+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999877555 222224445544443333 3344445556666
Q ss_pred HHhhhHHHHHHHHHHHHHH--------------------Hhhhh-hhh------------h--ccchhhhhHHHHHHHHH
Q 005743 183 DEKTSLSEQLAALSVILER--------------------KNDNK-NAI------------N--MGSSSSQNLEMEVVELR 227 (679)
Q Consensus 183 aE~~rLq~qv~e~~~~~~Q--------------------~ee~~-k~d------------~--e~e~~l~~LE~EV~ELR 227 (679)
.....|++++.+-..-... -+++. ..+ . +-...+..+..|+.+|+
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655566555443221110 01110 000 0 11144566667777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhhhhh
Q 005743 228 RLNKELQMEKRNLACKFSSMENQLTSLA 255 (679)
Q Consensus 228 R~NkeLQ~EKreL~~KL~sAe~~~~~~~ 255 (679)
..+..||-+..+....|..+...++.+.
T Consensus 479 ~~~~~LQ~eLsEk~~~l~~~kee~s~l~ 506 (775)
T PF10174_consen 479 AKLESLQKELSEKELQLEDAKEEASKLA 506 (775)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence 7777777777777777777766555543
No 102
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.62 E-value=20 Score=44.47 Aligned_cols=15 Identities=27% Similarity=0.424 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhhhc
Q 005743 279 DLSKQVEGLQMSRLN 293 (679)
Q Consensus 279 ~L~~QlE~l~~~Re~ 293 (679)
.|..++..+..+..+
T Consensus 910 kle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 910 KLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHhHHHHhhhhHHH
Confidence 333444444444433
No 103
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=90.59 E-value=20 Score=35.82 Aligned_cols=193 Identities=17% Similarity=0.213 Sum_probs=90.2
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchh-HHHHHHHHHHhHhHHH
Q 005743 103 AQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW---------KRNPK-VLELERELEAKKIEND 172 (679)
Q Consensus 103 ~~~~~~~~~~~r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------KEQE~-I~ELqrqL~~k~~Ei~ 172 (679)
+.-+++.|...+.|. ..++..|..|...+..+-.+...|-..+.+| -|.+. +..+=.++..-...+.
T Consensus 19 ~~e~D~~F~~~~~~~---~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~ 95 (236)
T PF09325_consen 19 MKEPDEWFEEIKDYV---DKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKIS 95 (236)
T ss_pred CCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHH
Confidence 333344555433343 3456667777777777777777777777776 12221 2222222221111111
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 173 ~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
.+-. ..-..+...|.+-+.+|.....--+++..+-..+...+..++.++.--|.....|......=..|++.++..+.
T Consensus 96 ~~~~--~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~ 173 (236)
T PF09325_consen 96 ELLE--EQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIE 173 (236)
T ss_pred HHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 1111 11233344455666666655543222221111111112222222222222222222221111344555554443
Q ss_pred hhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 005743 253 SLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLR 309 (679)
Q Consensus 253 ~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR 309 (679)
.+.. -+..++.++. ..++.+..+++.|+..|..||-..+. .|++..+.
T Consensus 174 ~~~~-----~~~~~~~~~~---~is~~~k~E~~rf~~~k~~d~k~~l~-~~~~~~i~ 221 (236)
T PF09325_consen 174 EAER-----RVEQAKDEFE---EISENIKKELERFEKEKVKDFKSMLE-EYAESQIE 221 (236)
T ss_pred HHHH-----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3221 2334455555 33567889999999999999999886 66665443
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.57 E-value=22 Score=38.41 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-hcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI-NMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d-~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
.+..+..-+..|.+....|..++..+..+.. +...+| .++ ...+.++..++.++|+...+|+.+...+..+++
T Consensus 171 ~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~---e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 171 QLEQLDELLPKLRERKAELEEELENLKQLVE---EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333322 122233 122 378888899999999999999999888888877
Q ss_pred hhHHHhh
Q 005743 246 SMENQLT 252 (679)
Q Consensus 246 sAe~~~~ 252 (679)
....+..
T Consensus 248 ~~~~~k~ 254 (325)
T PF08317_consen 248 ELEEQKQ 254 (325)
T ss_pred HHHHHHH
Confidence 7765543
No 105
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.44 E-value=31 Score=42.22 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
+.+|+-+|.....||..|..+...||.|.+.||+-++.+..-.+|
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke 138 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKE 138 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777778888888888888888888888888776655543
No 106
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.35 E-value=18 Score=38.73 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
..+...+.++.++++...+++.+...+...++.++.++
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555554443
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.28 E-value=12 Score=36.69 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 168 KIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.++|..|+.+|+.|-.+.++|..++..+
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444433
No 108
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=90.27 E-value=0.28 Score=54.87 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
..++..+.-++++||+..-||.-.|-++..
T Consensus 56 f~da~~f~~R~NSLQ~RIDRL~vkVtqLDs 85 (518)
T KOG1830|consen 56 FNDANNFNHRANSLQERIDRLAVKVTQLDS 85 (518)
T ss_pred HHHhhhhhhhhhHHHHHHHHHhhhhhccCC
Confidence 456677777777777777777666555443
No 109
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.23 E-value=0.085 Score=61.88 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 005743 268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN 305 (679)
Q Consensus 268 eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiN 305 (679)
.++..|...+..|...++.+...++..+.|.-.|++.+
T Consensus 384 ~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 384 RRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666555544
No 110
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.23 E-value=13 Score=44.49 Aligned_cols=87 Identities=21% Similarity=0.146 Sum_probs=48.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhh----------hcChHHH
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR----------HTNEDLS 281 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR----------~~Ne~L~ 281 (679)
+++.|+.||......-......|-|...|...|..++..+.+ ....|..++.-+-.+= .+-+.|.
T Consensus 174 Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~-----q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~ 248 (739)
T PF07111_consen 174 LEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA-----QVTLVEQLRKYVGEQVPPEVHSQAWEPEREELL 248 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhhhCCcccccHHHHHHHHHHH
Confidence 356666666666666666666666777777777766655533 1122333333321111 2235788
Q ss_pred HHHHHHhhhhhchH--HHHHHHHH
Q 005743 282 KQVEGLQMSRLNEV--EELAYLRW 303 (679)
Q Consensus 282 ~QlE~l~~~Re~dv--EELvylRw 303 (679)
+-|+.|+++|++-- -||.+-|.
T Consensus 249 ~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 249 ETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887532 35554343
No 111
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.23 E-value=0.41 Score=53.32 Aligned_cols=7 Identities=57% Similarity=1.046 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 005743 472 PNPPPRP 478 (679)
Q Consensus 472 p~PPP~p 478 (679)
|+=||++
T Consensus 485 PPlPPr~ 491 (563)
T KOG1785|consen 485 PPLPPRL 491 (563)
T ss_pred CCCCCCc
Confidence 4444554
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.22 E-value=13 Score=48.12 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=7.9
Q ss_pred hhhHHHHHhhcCC
Q 005743 618 LVDERAVLKHFDW 630 (679)
Q Consensus 618 LsDEraVLk~F~w 630 (679)
|++-.++-.||+|
T Consensus 961 l~~~~~~~~~~~y 973 (1486)
T PRK04863 961 LTEVVQRRAHFSY 973 (1486)
T ss_pred HHHHHHHHHhccH
Confidence 5555666666655
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.15 E-value=9.8 Score=38.98 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHH-----HHHHHhhhhhhh-hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSV-----ILERKNDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~-----~~~Q~ee~~k~d-~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL 244 (679)
+-.+...|..+.+++..|+.++.+... ......+ .+.+ .+.+.++..|..++..+++.+.+++....++...|
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQ-LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777777776666554 1111010 1111 12235555666666666666666666555555555
Q ss_pred hhhHHHh
Q 005743 245 SSMENQL 251 (679)
Q Consensus 245 ~sAe~~~ 251 (679)
+.....+
T Consensus 101 ~~~~~~l 107 (302)
T PF10186_consen 101 EQRRSRL 107 (302)
T ss_pred HHHHHHH
Confidence 5555444
No 114
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.01 E-value=16 Score=40.18 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHhhhhhhhhhHHHhhhhhcc--chhHHHHHHHHHHHHhhhcChHHHHHHHHHhh---hhhchHHHHH
Q 005743 235 MEKRNLACKFSSMENQLTSLAKA--SESDIISKIKAEALVLRHTNEDLSKQVEGLQM---SRLNEVEELA 299 (679)
Q Consensus 235 ~EKreL~~KL~sAe~~~~~~~~~--~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~---~Re~dvEELv 299 (679)
+|+.+|...|+.+..++..+.-. +=-|.-..+..|-+..|..-..|..++..+.. .|-.||+.|+
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi 195 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI 195 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence 45555555555555554443211 00011123446667777777788888877754 4666788888
No 115
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=17 Score=41.72 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE 285 (679)
.++..-=.|+.|+=+.+-.+-.|-++|-.++..-+.+..- .+ ..++.++|..+|..|+.|..+|.
T Consensus 455 t~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l-~s------lEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 455 TRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL-KS------LEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH-hh------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777899999999999999999999999886644321 11 34889999999999999999874
No 116
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.89 E-value=12 Score=47.08 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------HhhhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--------~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeL 233 (679)
.++..++..|.+|++.++.+..++....-.++. ++++.+. ..+..++-++.+...++..++++
T Consensus 623 e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~--~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEI--KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778888888777776655443333331 1112222 23455555555555555555555
No 117
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.81 E-value=35 Score=42.61 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHhhhh------chh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 125 LELDSLRSLLQESKER-------EFKLQAELSEWKR------NPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqER-------E~kLE~ELlEyKE------QE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
.+++.++..|.+|++- ..=|+.||..|+- .|+ |..|+.+|.--..+.++..-+++-|..||..|+-
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4455566666665554 4456677777722 334 7778888777777888888888888888888876
Q ss_pred HHHHH
Q 005743 191 QLAAL 195 (679)
Q Consensus 191 qv~e~ 195 (679)
+-+.+
T Consensus 337 q~eqL 341 (1195)
T KOG4643|consen 337 QKEQL 341 (1195)
T ss_pred HHHHh
Confidence 65543
No 118
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.79 E-value=26 Score=40.67 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 270 ALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 270 ~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
++.+...-+++..+++.+...+..-.+.+..+|=...-.|..+..+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555558888888888887777776666655554344445444
No 119
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.69 E-value=9.4 Score=46.20 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------Hhhhhhhhhcc---chhhhh-------
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNKNAINMG---SSSSQN------- 218 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--------~ee~~k~d~e~---e~~l~~------- 218 (679)
|..|+++|..--.||.+|+..+....++..++..++-.+-..... ..+...++.|+ ..++..
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d 319 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSD 319 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 666666666666677777666666666666665555443322221 12222333232 133343
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchh--HHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 219 -------LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASES--DIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 219 -------LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es--~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
|-..+......+.-||-+.-.|..+|+.+..++..-....+. +..+...-|++.||..++.....|.+|+.
T Consensus 320 ~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ 399 (775)
T PF10174_consen 320 MRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQK 399 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445556777777888888887766553322111 11223344455566666555556655554
Q ss_pred h
Q 005743 290 S 290 (679)
Q Consensus 290 ~ 290 (679)
.
T Consensus 400 k 400 (775)
T PF10174_consen 400 K 400 (775)
T ss_pred H
Confidence 4
No 120
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.59 E-value=33 Score=37.67 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
..|..|+.+...++....+|..||=+|---|+.-|
T Consensus 142 k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ 176 (310)
T PF09755_consen 142 KKIERLEKEKSAKQEELERLRREKVDLENTLEQEQ 176 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555666555555566666666666555555443
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.57 E-value=11 Score=35.55 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE 285 (679)
+.|..|..++.+++.....|+.+.......|+..+.....--..-+.+ +..++.-+.-|...|-=|..||+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e-~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKE-LSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667777777777777777766666666666665433211111111 22334444444444444444444
No 122
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.47 E-value=12 Score=38.03 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhH-hHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKK-IENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~-~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
+..||..|+..++.+++++..++..+.+. .+... +.-|+.-...+. .+.+.|..+++.++.+-..-...+..+.
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888777777665 22222 333333322222 3666666666666665554444444433
No 123
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=14 Score=44.29 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=24.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
+..+.+++.|+.-++..+++||.|...|.+||....
T Consensus 586 ~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 586 QEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666667777777777777777777777766654
No 124
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.36 E-value=41 Score=40.51 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH------------Hhhhhhhhhcc---chhhhhHHHH
Q 005743 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER------------KNDNKNAINMG---SSSSQNLEME 222 (679)
Q Consensus 158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q------------~ee~~k~d~e~---e~~l~~LE~E 222 (679)
..+|-.+.....+...+..+|..|+..+..|.+++.....-.++ ++.+...+.++ ++.++-||..
T Consensus 516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk 595 (786)
T PF05483_consen 516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENK 595 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444566666778888888888887776533322222 11111122222 2444444444
Q ss_pred HHHHH-------HHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhh
Q 005743 223 VVELR-------RLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRH 275 (679)
Q Consensus 223 V~ELR-------R~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~ 275 (679)
+-.|| ....+||.+|.-|..+..+--.+++.+ | --|.+++.|+..+..
T Consensus 596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~----e-ikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 596 CNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY----E-IKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHh
Confidence 44444 466778888888877664433343322 1 124455555554433
No 125
>PRK01156 chromosome segregation protein; Provisional
Probab=89.32 E-value=34 Score=41.30 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=19.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAEL 148 (679)
Q Consensus 116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~EL 148 (679)
|......+..+|..|+..++.+..+-.+++..+
T Consensus 474 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 506 (895)
T PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK 506 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566777777777766666555554333
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.31 E-value=22 Score=36.17 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=52.5
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-------HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhh
Q 005743 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (679)
Q Consensus 116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-------I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~r 187 (679)
....+.+...|...|..-+..+++.-..|+.+|..| ++..+ +..++.+|..-.-+-..|.+++..|+.|...
T Consensus 46 ~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 46 NEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999999999 55544 4444444444444555555555555555555
Q ss_pred HHHHH
Q 005743 188 LSEQL 192 (679)
Q Consensus 188 Lq~qv 192 (679)
|....
T Consensus 126 L~~kf 130 (201)
T PF13851_consen 126 LYRKF 130 (201)
T ss_pred HHHHH
Confidence 55443
No 127
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.31 E-value=37 Score=37.11 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=83.0
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhchh----HHHHHHHHHHhHh-------------
Q 005743 115 RQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW--------KRNPK----VLELERELEAKKI------------- 169 (679)
Q Consensus 115 ~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy--------KEQE~----I~ELqrqL~~k~~------------- 169 (679)
.|......++.|-.+|.+.+..=++-..+||.++.-| .+-+. -++|+.-++....
T Consensus 60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~ 139 (305)
T PF14915_consen 60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDV 139 (305)
T ss_pred HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchH
Confidence 3666677788999999999988888888899998888 11111 2333332222111
Q ss_pred -----HHHHHHHHHhhhHHHhhhHHHHHHHHH-------HHHH--H------Hhhhhhhhhcc---chhhhhHHHHHHHH
Q 005743 170 -----ENDEIVRRVGMLEDEKTSLSEQLAALS-------VILE--R------KNDNKNAINMG---SSSSQNLEMEVVEL 226 (679)
Q Consensus 170 -----Ei~~Lk~kI~sLEaE~~rLq~qv~e~~-------~~~~--Q------~ee~~k~d~e~---e~~l~~LE~EV~EL 226 (679)
...+|.++++.-|+.-+.|+.++-... .+.+ | +......+.+. +..+..--+.-.-|
T Consensus 140 S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~ 219 (305)
T PF14915_consen 140 SNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESL 219 (305)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 235666666666666666665554332 2222 1 01111111111 24455555555667
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 227 RRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 227 RR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
.-...+||-||.=|-..|+.|..++..
T Consensus 220 eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999877654
No 128
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.23 E-value=29 Score=38.87 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
.=++-|...+..++.+=...|.+|..|
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777
No 129
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.99 E-value=24 Score=39.50 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=26.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSE 150 (679)
Q Consensus 119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlE 150 (679)
+...+..++..|+..+..|+.+..+|+.++..
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999887753
No 130
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.92 E-value=19 Score=44.72 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQ 145 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE 145 (679)
++.++|+.|+-.|+.+.+|+..+.
T Consensus 206 ~L~~~~~~l~kdVE~~rer~~~~~ 229 (1072)
T KOG0979|consen 206 RLEDEIDKLEKDVERVRERERKKS 229 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888888877777765
No 131
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.76 E-value=16 Score=42.80 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHh-HHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 157 VLELERELEAKKI-ENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 157 I~ELqrqL~~k~~-Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
.-++..+|+..-. ...-+.-+|+.|++.+.+|.+++.+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e 253 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINE 253 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443332 2223445556666666666666653
No 132
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.69 E-value=3.5 Score=40.16 Aligned_cols=85 Identities=25% Similarity=0.406 Sum_probs=53.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh-
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL- 292 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re- 292 (679)
..+.+|..++.+|+..+.+|+.+...|...|....+.. |.. .+...+..|+.+++.|...|+.|+....
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------t~~----el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------TNE----ELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44666666666666666666666666655555543322 222 3457777788888899999999887543
Q ss_pred ---chHHHHH--HHHHHHHHH
Q 005743 293 ---NEVEELA--YLRWVNSCL 308 (679)
Q Consensus 293 ---~dvEELv--ylRwiNacL 308 (679)
.+++.+. |.+|...|.
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWK 162 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 4666666 446666663
No 133
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.66 E-value=46 Score=40.11 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHHHHHHH------HHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743 215 SSQNLEMEVVELRRLNKELQ------MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ------~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
.-++-|+++.||+....+=| .+---.+-.|..++..+.-+....|.+ |-.++...+..-..+-.-++||+.+.
T Consensus 399 ~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~eke-v~dLe~~l~~~~~~eq~yskQVeeLK 477 (786)
T PF05483_consen 399 QKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKE-VHDLEIQLTTIKESEQHYSKQVEELK 477 (786)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33455666888888776655 222334556777777777776666665 44778888888888888899999887
Q ss_pred h
Q 005743 289 M 289 (679)
Q Consensus 289 ~ 289 (679)
.
T Consensus 478 t 478 (786)
T PF05483_consen 478 T 478 (786)
T ss_pred H
Confidence 6
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.56 E-value=15 Score=39.86 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhc----cchhhhhHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINM----GSSSSQNLEMEVVELRRLNKE 232 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e----~e~~l~~LE~EV~ELRR~Nke 232 (679)
+..|+.....-...+..++.-+-.|......|+.++..+..+.. +...+|.+ +...+.++..+++.++....+
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~---e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED---ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444455555555556666666666666655444333 22333422 137788888888888888888
Q ss_pred HHHHHHhhhhhhhhhHHHhh
Q 005743 233 LQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 233 LQ~EKreL~~KL~sAe~~~~ 252 (679)
+|.|..+|..+++....+..
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 230 LEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887765553
No 135
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.45 E-value=19 Score=35.22 Aligned_cols=69 Identities=28% Similarity=0.288 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
|..|+.+|..-+.++..|...+.+|..++..|-.++-. ...++.+||.-...+++....++.+
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~-----------------~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQK-----------------KQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55566666666666666777776666666555433211 2345666666666666666666666
Q ss_pred HHhhhh
Q 005743 237 KRNLAC 242 (679)
Q Consensus 237 KreL~~ 242 (679)
+..+..
T Consensus 117 k~q~~e 122 (140)
T PF10473_consen 117 KVQLKE 122 (140)
T ss_pred HHHHHH
Confidence 544333
No 136
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.33 E-value=46 Score=41.02 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 005743 186 TSLSEQLAALSVILERKNDN 205 (679)
Q Consensus 186 ~rLq~qv~e~~~~~~Q~ee~ 205 (679)
++|+++.++..+.+.|-+.+
T Consensus 389 eqLr~elaql~a~r~q~eka 408 (980)
T KOG0980|consen 389 EQLRNELAQLLASRTQLEKA 408 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666654443
No 137
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.13 E-value=5.5 Score=43.97 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.6
Q ss_pred CcHHHHHHHH
Q 005743 664 VPCDLALKKM 673 (679)
Q Consensus 664 ~pc~~aL~km 673 (679)
++.+.-|+-+
T Consensus 331 i~l~~yLr~V 340 (365)
T KOG2391|consen 331 IDLDQYLRHV 340 (365)
T ss_pred eeHHHHHHHH
Confidence 4444444443
No 138
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.06 E-value=3.6 Score=49.23 Aligned_cols=76 Identities=28% Similarity=0.396 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHH---hHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEA---KKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~---k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
+++.|...||.-|++++.||.+| |.+|-|.|. .--||+|+.. ..+|.+-|+-.|..|++|..-|..|+.+..+
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rl---l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARL---LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655 334445555 5567787764 3367788999999999999999999999888
Q ss_pred HHH
Q 005743 198 ILE 200 (679)
Q Consensus 198 ~~~ 200 (679)
+++
T Consensus 150 Lk~ 152 (717)
T PF09730_consen 150 LKE 152 (717)
T ss_pred HHH
Confidence 877
No 139
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=88.05 E-value=7.4 Score=39.90 Aligned_cols=106 Identities=20% Similarity=0.105 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH--HHH---
Q 005743 128 DSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV--ILE--- 200 (679)
Q Consensus 128 ~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~--~~~--- 200 (679)
+.|+--..+|-.|-.+.|.+-+-. -++-. ++|.-++|+.--.||..|+.--.-|+.+|++|.+.+--+.- .+.
T Consensus 12 ell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkl 91 (195)
T PF10226_consen 12 ELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKL 91 (195)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHH
Confidence 344555566667777777776666 66666 88999999999999999999999999999998876633221 111
Q ss_pred --HHhh-------hhhhhhcc-chhhhhHHHHHHHHHHHHHHH
Q 005743 201 --RKND-------NKNAINMG-SSSSQNLEMEVVELRRLNKEL 233 (679)
Q Consensus 201 --Q~ee-------~~k~d~e~-e~~l~~LE~EV~ELRR~NkeL 233 (679)
+-|. ++..+... +++|++||....+|-|.|.+|
T Consensus 92 arEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 92 AREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLEL 134 (195)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0010 11222112 488888888888888777665
No 140
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.70 E-value=29 Score=42.10 Aligned_cols=26 Identities=23% Similarity=0.040 Sum_probs=12.5
Q ss_pred HHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 175 VRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 175 k~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
+.+|.+||+-|.-||.|+.|..+..+
T Consensus 426 n~El~sLqSlN~~Lq~ql~es~k~~e 451 (861)
T PF15254_consen 426 NLELFSLQSLNMSLQNQLQESLKSQE 451 (861)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444555555555555554444333
No 141
>PF15195 TMEM210: TMEM210 family
Probab=87.47 E-value=0.34 Score=44.73 Aligned_cols=7 Identities=43% Similarity=0.705 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 005743 470 RVPNPPP 476 (679)
Q Consensus 470 rvp~PPP 476 (679)
.|+-=||
T Consensus 83 eVsmm~~ 89 (116)
T PF15195_consen 83 EVSMMPP 89 (116)
T ss_pred cccccCc
Confidence 3443333
No 142
>PRK01156 chromosome segregation protein; Provisional
Probab=87.40 E-value=68 Score=38.85 Aligned_cols=6 Identities=0% Similarity=-0.025 Sum_probs=2.3
Q ss_pred ccccch
Q 005743 374 NLECQD 379 (679)
Q Consensus 374 ~~~~~~ 379 (679)
.++-|+
T Consensus 830 ilDEpt 835 (895)
T PRK01156 830 IMDEPT 835 (895)
T ss_pred EEeCCC
Confidence 333343
No 143
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.29 E-value=8.3 Score=35.35 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh--HHHH------HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEW----KRNPK--VLEL------ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~--I~EL------qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
.-..+...+..|..++..|+..+..| ++.+. ++-+ .+.......+|..|..+|+.|+++..++++.|.
T Consensus 26 ~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 26 REEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666788999999999887777 66665 2222 222334457999999999999999999999998
Q ss_pred HHHHH
Q 005743 194 ALSVI 198 (679)
Q Consensus 194 e~~~~ 198 (679)
.|..-
T Consensus 106 ~~~~Y 110 (126)
T PF13863_consen 106 EYKKY 110 (126)
T ss_pred HHHHH
Confidence 87643
No 144
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.00 E-value=19 Score=36.29 Aligned_cols=119 Identities=11% Similarity=0.134 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--Hhhhh
Q 005743 131 RSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--KNDNK 206 (679)
Q Consensus 131 r~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--~ee~~ 206 (679)
+..|..+-++-..=+.-|..| ++.+. +.+++..+..-.+.-..|.+++..++.+...++.++......-.. -.+++
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al 90 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL 90 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333444444433333334444 66666 788888888888888888888888888888888777543211110 01111
Q ss_pred hhh-----------h---ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 207 NAI-----------N---MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 207 k~d-----------~---e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
.+. . .....+..|...+.+|+....+++.++..|.-+...|++
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a 147 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKA 147 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 112445555555555555555555555555555555554
No 145
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.88 E-value=21 Score=34.92 Aligned_cols=31 Identities=32% Similarity=0.271 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
.++++..++.+++....+++.....|..++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 152 ELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555444433
No 146
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.78 E-value=5.2 Score=35.97 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchhHHHHHHHHHH------------hHhHHHHHHHHHhhhHHHh
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW---KRNPKVLELERELEA------------KKIENDEIVRRVGMLEDEK 185 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---KEQE~I~ELqrqL~~------------k~~Ei~~Lk~kI~sLEaE~ 185 (679)
.....||..|+..+..|+..-..|.++=++. +| +..|+.+|.. -..+|..|+.++..|+.+|
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e---L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en 91 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE---LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN 91 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777778777777776666666532222 22 3334444432 1248999999999999999
Q ss_pred hhHHHHHHH
Q 005743 186 TSLSEQLAA 194 (679)
Q Consensus 186 ~rLq~qv~e 194 (679)
..|+.+++|
T Consensus 92 ~~L~~~~~e 100 (100)
T PF01486_consen 92 NQLRQKIEE 100 (100)
T ss_pred HHHHHHhcC
Confidence 999988764
No 147
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.70 E-value=70 Score=37.25 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh---hhhhchH
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ---MSRLNEV 295 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~---~~Re~dv 295 (679)
||.-+-++.-...+|+.+.+-+..+|..|-+.....-... .+|..+.|.+-|.|.++|.++. ...--+.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~--------e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~ 556 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEEN--------ERELVAQRIEIEKLEKELNDLNLLSKTSILDA 556 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHhhhhccchHhhH
Confidence 5555566666666777777777777776655443322222 3444445555556655555543 3444566
Q ss_pred HHHH
Q 005743 296 EELA 299 (679)
Q Consensus 296 EELv 299 (679)
|++|
T Consensus 557 eq~v 560 (622)
T COG5185 557 EQLV 560 (622)
T ss_pred HHHH
Confidence 6666
No 148
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.65 E-value=82 Score=39.71 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccc--hhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh--
Q 005743 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKAS--ESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL-- 292 (679)
Q Consensus 217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~--Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re-- 292 (679)
++.-..|+-+++....+|.+-..|..+-++++..+.+...+- +..-+.+++.|++.-+..-.+|.+++..|..+.-
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~ 882 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI 882 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666667777777777777777777777777776665543221 1223456777888777777888888888887654
Q ss_pred -chHHHHHHHHHHHHHHHHhhhhh
Q 005743 293 -NEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 293 -~dvEELvylRwiNacLR~EL~d~ 315 (679)
+++|-+.+ -|.|+-..+.|.+.
T Consensus 883 es~ie~~~~-er~~lL~~ckl~~I 905 (1141)
T KOG0018|consen 883 ESKIERKES-ERHNLLSKCKLEDI 905 (1141)
T ss_pred hhHHHHHHH-HHHHHHHHhhhccc
Confidence 44555555 66665444466555
No 149
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.61 E-value=52 Score=39.15 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=56.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh----hHHHhhhhhc--cchhHHHHHHHHHHHHhhhc----------
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS----MENQLTSLAK--ASESDIISKIKAEALVLRHT---------- 276 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s----Ae~~~~~~~~--~~Es~~Va~~~eE~~~LR~~---------- 276 (679)
...++.+|.-|-.|.+.++.-|-+..++..+++. -.+.++.+-. ..-...|..++.|+..||+.
T Consensus 195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~ 274 (629)
T KOG0963|consen 195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL 274 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4566677777777777777666666666555211 0111111100 01122333556666666653
Q ss_pred -ChHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHHHhhhhh
Q 005743 277 -NEDLSKQVEGLQMSRLNEVEELA-YLRWVNSCLRDELQNS 315 (679)
Q Consensus 277 -Ne~L~~QlE~l~~~Re~dvEELv-ylRwiNacLR~EL~d~ 315 (679)
+-+...++......++..+..|+ -..-+.+.+++|+-.+
T Consensus 275 ~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~ 315 (629)
T KOG0963|consen 275 AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH 315 (629)
T ss_pred ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22444555556666777777777 3356667777777776
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.58 E-value=3.8 Score=42.04 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=24.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
+++++...+..+.+|+..|.+|+.|...+..+++.++++.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777777666666555555555443
No 151
>PHA03211 serine/threonine kinase US3; Provisional
Probab=86.57 E-value=0.68 Score=51.74 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=6.4
Q ss_pred chhHHHHHHhhhh
Q 005743 634 KADTLREAAFGYR 646 (679)
Q Consensus 634 K~dalReAA~lY~ 646 (679)
+.|.+--...+|.
T Consensus 342 ~sDvwSlGviL~E 354 (461)
T PHA03211 342 SVDIWSAGLVIFE 354 (461)
T ss_pred hHHHHHHHHHHHH
Confidence 4455554444444
No 152
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.50 E-value=43 Score=36.48 Aligned_cols=79 Identities=27% Similarity=0.278 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHH------Hhh---------hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQ---AEL------SEW---------KRNPK-VLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE---~EL------lEy---------KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
-..-+..|+..+.+++++=++-= +|| +-| -|+|. +.+|++.+..+.-++..++..+..|+.
T Consensus 75 se~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 75 SEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE 154 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888887755421 111 222 44445 889999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 005743 184 EKTSLSEQLAALSVILER 201 (679)
Q Consensus 184 E~~rLq~qv~e~~~~~~Q 201 (679)
+...|+++|.+...+.++
T Consensus 155 e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 155 ELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999887766663
No 153
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.45 E-value=24 Score=33.64 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
..+.|++|.+.|+-++-.-..|+.++...
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666665555555555554444
No 154
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.32 E-value=31 Score=41.95 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.++..||.|+..=|....++.-.-++|-.+|+...
T Consensus 680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 680 SKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 55666666666666666666666666666666554
No 155
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.08 E-value=0.23 Score=59.89 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=0.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----------KRNPK-VLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----------KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
+......+..+|+.|+..-..|+--...|+.++.+. -+.|. ++.|+.+|..-...++.....++-|..
T Consensus 129 h~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~ 208 (859)
T PF01576_consen 129 HQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTE 208 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677777666666666666666666655 11111 444445555444455555555555555
Q ss_pred HhhhHHHHHHHHHHHHHH------------------Hhh-------hhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743 184 EKTSLSEQLAALSVILER------------------KND-------NKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR 238 (679)
Q Consensus 184 E~~rLq~qv~e~~~~~~Q------------------~ee-------~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKr 238 (679)
.+.+|+.++.++..-.+. -++ ..+....+...++.++.++..||-...+-+..+.
T Consensus 209 ~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~ 288 (859)
T PF01576_consen 209 QKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS 288 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 555555555554433331 000 0111112347788888888888888888888888
Q ss_pred hhhhhhhhhHHHhhhhhccchhHHH
Q 005743 239 NLACKFSSMENQLTSLAKASESDII 263 (679)
Q Consensus 239 eL~~KL~sAe~~~~~~~~~~Es~~V 263 (679)
+|-..|..+...+..+-.-.+.+.+
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~ 313 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAE 313 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888888887776655444444433
No 156
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=48 Score=39.19 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=15.1
Q ss_pred HHHHhhhcChHHHHHHHHHhhh
Q 005743 269 EALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 269 E~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
|+..|||.+-.|.+.++.|+..
T Consensus 195 EyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766654
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.02 E-value=57 Score=38.62 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=30.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
||-.-+++=..||.-.-.-.+.||.|...|.-||+-+-+
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~ 533 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFT 533 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344666777778888888889999999999999988754
No 158
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.83 E-value=59 Score=35.54 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW--K--RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy--K--EQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
..+..|+..+..+.++...|..++..| + +.-. ++||-.+.+.-..+-+.++.+|..|.++...+-+.+.+
T Consensus 13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889999999999999999 2 2222 88888888888888899999998888887665544444
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.60 E-value=74 Score=37.48 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhH----hHHHHHHHHHhhhHHHhhhHH
Q 005743 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKK----IENDEIVRRVGMLEDEKTSLS 189 (679)
Q Consensus 119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~----~Ei~~Lk~kI~sLEaE~~rLq 189 (679)
.......+++.|...+..++.+-..++.++..+ .+.+. +.+|+..+.... .+.+.|..++..++++..+.+
T Consensus 203 ~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~ 282 (650)
T TIGR03185 203 LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANR 282 (650)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666655555 22222 444444444322 244466666666666666666
Q ss_pred HHHHHHH
Q 005743 190 EQLAALS 196 (679)
Q Consensus 190 ~qv~e~~ 196 (679)
.++.++.
T Consensus 283 ~~l~~l~ 289 (650)
T TIGR03185 283 AQLRELA 289 (650)
T ss_pred HHHHHHh
Confidence 5555433
No 160
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.55 E-value=0.56 Score=57.75 Aligned_cols=6 Identities=33% Similarity=0.063 Sum_probs=2.3
Q ss_pred hhhhhh
Q 005743 643 FGYRDL 648 (679)
Q Consensus 643 ~lY~~L 648 (679)
++-+|.
T Consensus 176 rekRdR 181 (2365)
T COG5178 176 REKRDR 181 (2365)
T ss_pred HHhhhh
Confidence 333433
No 161
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.49 E-value=30 Score=36.99 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRN 239 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKre 239 (679)
+-+.+|+.+|-.||+...+|+.+-.+
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788888888888888888876653
No 162
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.27 E-value=16 Score=38.23 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q 191 (679)
+.+|.-+++..-.+...|..+..-++.++++|+.+
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~ 69 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEE 69 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544445555555555555555555443
No 163
>PHA03247 large tegument protein UL36; Provisional
Probab=85.19 E-value=1.6 Score=57.84 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005743 134 LQESKEREFKLQAELSE 150 (679)
Q Consensus 134 V~eLqERE~kLE~ELlE 150 (679)
|..|.++...|..+..+
T Consensus 504 ~~~l~~~~~~i~~~v~~ 520 (3151)
T PHA03247 504 VVRLAAREAAIAREVAE 520 (3151)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 164
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.17 E-value=7.8 Score=37.75 Aligned_cols=63 Identities=30% Similarity=0.365 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
..+..||..|+..+.+|+.....|+.+|..+.-..+..||..++..-..++..|..++..|+.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888888888888888888855555666666665555566666666666655
No 165
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.10 E-value=0.27 Score=59.26 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHH
Q 005743 214 SSSQNLEMEVVE-------LRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (679)
Q Consensus 214 ~~l~~LE~EV~E-------LRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~ 286 (679)
..|..|+.++.+ +.|..+.|+.+..+|-++|+.+-.... .+...+..+...--+|..+++.
T Consensus 525 r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~------------e~~k~~kk~q~qlkdlq~~lee 592 (859)
T PF01576_consen 525 RQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANE------------EAQKQLKKLQAQLKDLQRELEE 592 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH------------HHHHHHHHHHHHHHHHhhhhHH
Confidence 455665555543 567778888888888888887742211 1122233233333366666666
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHhhhhhccccc
Q 005743 287 LQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTN 320 (679)
Q Consensus 287 l~~~Re~dvEELvylRwiNacLR~EL~d~~sa~D 320 (679)
....++.-.+.+.-..+-..-|..|+..+..+++
T Consensus 593 ~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~ 626 (859)
T PF01576_consen 593 AQRAREELREQLAVSERRLRALQAELEELREALE 626 (859)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555332222236677776654444
No 166
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.04 E-value=14 Score=46.54 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 234 Q~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
...|++|+.+|...-.+++.+.. +.. .++..+..++++-..+.+|++.+.
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~~--~~~---~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIAS--QQR---QAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666666655555555432 221 345666666666666777776665
No 167
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=84.80 E-value=2.2 Score=44.18 Aligned_cols=67 Identities=28% Similarity=0.311 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHH-HHHHHHHHhhhcChHHHHHHHHHh
Q 005743 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIIS-KIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va-~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
..++.++.+|.-.+++|+....++..|+++++.+-+..- +++. ++++|+..|..+|..|..||+...
T Consensus 188 ~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r-----~ieEkk~~eei~fLk~tN~qLKaQLegI~ 255 (259)
T KOG4001|consen 188 TRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEER-----EIEEKKMKEEIEFLKETNRQLKAQLEGIL 255 (259)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456677888888899999999999999999997654322 2332 789999999999999999998753
No 168
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.69 E-value=26 Score=34.29 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
+.+++.+|..-..|++.+...+..++.+...+++.....
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555555555555544444444433
No 169
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.63 E-value=91 Score=40.21 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
++.+|..|...|..+.++-..|+..+...
T Consensus 747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 747 LDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666555555555554444
No 170
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.56 E-value=50 Score=33.70 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743 259 ESDIISKIKAEALVLRHTNEDLSKQVE 285 (679)
Q Consensus 259 Es~~Va~~~eE~~~LR~~Ne~L~~QlE 285 (679)
|..-+..+..++..|..+...|...|+
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556666655555555555544
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.35 E-value=33 Score=32.73 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
|..|+.+|...-.|+..|+.+++.|+.+...+.++++.+..-.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888877655443
No 172
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.14 E-value=39 Score=37.15 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEWKR 153 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEyKE 153 (679)
-++-|...+..++.+=...|.+|..|++
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666633
No 173
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.04 E-value=98 Score=36.85 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEWK 152 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEyK 152 (679)
++.|...+..++.+-...|.+|..||
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666663
No 174
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.96 E-value=77 Score=38.80 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
..+..+...+..++...++|++...+......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~ 305 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEE 305 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655555544444
No 175
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.79 E-value=27 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.+.+|+-.|.--++|.+.|+.+..++-...+
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666655554444
No 176
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.74 E-value=90 Score=35.95 Aligned_cols=19 Identities=32% Similarity=0.198 Sum_probs=10.2
Q ss_pred HhhhHHHhhhHHHHHHHHH
Q 005743 178 VGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 178 I~sLEaE~~rLq~qv~e~~ 196 (679)
+..++.+.+.|.+......
T Consensus 189 tl~~e~~~~~L~~~~~A~~ 207 (511)
T PF09787_consen 189 TLKKEIERQELEERPKALR 207 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666666665555333
No 177
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.62 E-value=1.1e+02 Score=39.30 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDE 184 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE 184 (679)
..+|..|++++.++...-.+++..|....-.|. +.+|+..+......+..+.-.+..|..+
T Consensus 853 ~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~ 914 (1294)
T KOG0962|consen 853 EREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVE 914 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhh
Confidence 345555555555555555555555544433333 5555555555444444444444444333
No 178
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.55 E-value=93 Score=35.99 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQES 137 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eL 137 (679)
.++..||..|+..+...
T Consensus 175 e~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 175 EELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577888888777665
No 179
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=83.41 E-value=1 Score=53.69 Aligned_cols=15 Identities=0% Similarity=-0.055 Sum_probs=10.9
Q ss_pred cchhHHHHHHHhhcc
Q 005743 523 RAPQVVEFYHSLMKR 537 (679)
Q Consensus 523 RaP~vvefY~SL~~r 537 (679)
..+.|.-|||...+-
T Consensus 392 p~~~lk~l~wdk~~~ 406 (833)
T KOG1922|consen 392 PKNKLKPLHWDKTRG 406 (833)
T ss_pred CCCCCCCccccccCC
Confidence 357788888887654
No 180
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.21 E-value=5.7 Score=42.92 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=34.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
++..++.|+.|..+|.....+|+.|..+|...+...+..+..+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888999999999999988888888887665544
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.94 E-value=23 Score=42.70 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 125 LELDSLRSLLQESKERE-------FKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE-------~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
.++..|+.-+.+...+. ..++..|+-. .|--. .-+|+++|..+.+.+-.+.-++.+|+..-.-++.++
T Consensus 49 e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 49 EMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL 128 (916)
T ss_pred HHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence 44455555555444333 3344444444 44433 668888888888888888888888888777777777
Q ss_pred HHHHH
Q 005743 193 AALSV 197 (679)
Q Consensus 193 ~e~~~ 197 (679)
....+
T Consensus 129 ~qs~r 133 (916)
T KOG0249|consen 129 QQSLR 133 (916)
T ss_pred HhHHh
Confidence 66555
No 182
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.84 E-value=35 Score=34.82 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=53.3
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH-----------HHHHH--Hhhhhhhhh---ccch
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS-----------VILER--KNDNKNAIN---MGSS 214 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~-----------~~~~Q--~ee~~k~d~---e~e~ 214 (679)
+|.+. |.+.+..|..-.+.-..|.+++..++.....++.++.... ...++ ++.+..-+. ....
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5555555555556666666777666666666665543221 11111 111111111 1135
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
.+..|+..+.+|++...++.-.+..|.-|...|+++
T Consensus 114 ~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 114 TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666677777777777764
No 183
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.82 E-value=33 Score=37.33 Aligned_cols=141 Identities=20% Similarity=0.162 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhH----HHhhhHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLE----DEKTSLSEQLAA 194 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLE----aE~~rLq~qv~e 194 (679)
+=-...|.++...|.+.-..|+.+...+ +..+. +-+|......-..++..|.+-..-++ ++-.++++.+++
T Consensus 136 eWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~ 215 (312)
T smart00787 136 EWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKK 215 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHH
Confidence 3344556666666666665665554444 22222 22333222222333333433333332 244444444333
Q ss_pred HHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhh
Q 005743 195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR 274 (679)
Q Consensus 195 ~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR 274 (679)
...-.. .+ ...+.+++.++.+++....+...++.++...+..||.....-...+-.+ |..+++.+..|-
T Consensus 216 ~~~ei~-----~~-----~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le 284 (312)
T smart00787 216 LLQEIM-----IK-----VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHH
Confidence 221111 00 1334555555555555555566666666666666666554444444444 447777777664
Q ss_pred h
Q 005743 275 H 275 (679)
Q Consensus 275 ~ 275 (679)
+
T Consensus 285 ~ 285 (312)
T smart00787 285 S 285 (312)
T ss_pred H
Confidence 4
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.79 E-value=36 Score=41.09 Aligned_cols=106 Identities=23% Similarity=0.235 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.|++.||.-= .-+||+-||+.. +|... ++|+|.+|.....++--..-+|..|-+ +|..+
T Consensus 256 ~DLfSEl~~~---------EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e-------~l~aL 319 (717)
T PF09730_consen 256 SDLFSELNLS---------EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTE-------QLDAL 319 (717)
T ss_pred chhhhhcchH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 4777776531 124666667666 33333 677777777665555444444444433 33333
Q ss_pred HHHHH---H----Hhhh---h-------hhh---hcc-chhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 196 SVILE---R----KNDN---K-------NAI---NMG-SSSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (679)
Q Consensus 196 ~~~~~---Q----~ee~---~-------k~d---~e~-e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~ 242 (679)
..+.. + ..+. . ..| .++ +.+.+....||..|+...+.|..+...+..
T Consensus 320 ~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 320 RKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred hhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 0 0000 0 001 121 466777777777777777777554444433
No 185
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.68 E-value=38 Score=39.09 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRL 229 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~ 229 (679)
..|++|+....+-..|..++..+.+.--.||+.- .....|+....-.=.|+...|..-|.||.-|.+.
T Consensus 401 ~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry---~~eiQqKnksvsqclEmdk~LskKeeeverLQ~l 468 (527)
T PF15066_consen 401 NTQKHLQESRNEKETLQLELKKIKANYVHLQERY---MTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQL 468 (527)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH---HHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444555555555555555555555544444431 1112222222112234556666667776544443
No 186
>PRK10698 phage shock protein PspA; Provisional
Probab=82.64 E-value=37 Score=35.05 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=60.0
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH-----------HHHHHH--Hhhhhhhhhcc---ch
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL-----------SVILER--KNDNKNAINMG---SS 214 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~-----------~~~~~Q--~ee~~k~d~e~---e~ 214 (679)
+|.+. +.+++..+..-.++-..+.+++..++.....++.+..-. +...++ .+.+...+.++ ..
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~ 113 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDE 113 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 555555555555666667777777777666666544221 111111 11111111222 36
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
.+..|...+..|+....++...+..|.-|..+|+++
T Consensus 114 ~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 114 TLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888888864
No 187
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.50 E-value=19 Score=33.84 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=30.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.|+.+++...+++..+.+++..+-.....|+.++.+...+.+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~ 45 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALE 45 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777777777777777777777777776666
No 188
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.25 E-value=27 Score=32.95 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
-.+|+++|..-...+.-++-.+.-|-.++..|.+.+..+..-.. ...+++.+|+.+|.|+++-...=-..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~----------s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA----------SRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666665555544322111 12477888888888888877776666
Q ss_pred HHhhhhhhhhhHHHhh
Q 005743 237 KRNLACKFSSMENQLT 252 (679)
Q Consensus 237 KreL~~KL~sAe~~~~ 252 (679)
|.+|-.+|.-+|...+
T Consensus 81 k~~l~~r~~k~~~dka 96 (107)
T PF09304_consen 81 KLELESRLLKAQKDKA 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 6688888887776544
No 189
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.17 E-value=16 Score=42.21 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
-.+|+.+|+...-++......|..+.++..+|+ .+.+....+-+++..|..++..|+=.|-..++=||+.=-.|+-+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~ 412 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPD 412 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Confidence 469999999999999999999999999999998 33333333333444444556666666667777777777777777
Q ss_pred HHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHH
Q 005743 237 KRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQV 284 (679)
Q Consensus 237 KreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~Ql 284 (679)
-.+|..||++..++++. + +++-+++.+-+..+|..|..|.-+.
T Consensus 413 EE~Lr~Kldtll~~ln~----P-nq~k~Rl~~L~e~~r~q~~~~~~~~ 455 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNA----P-NQLKARLDELYEILRMQNSQLKLQE 455 (508)
T ss_pred HHHHHHHHHHHHHHhcC----h-HHHHHHHHHHHHHHHhhcchhcccc
Confidence 77788888887766643 2 5566666677777777654444333
No 190
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.10 E-value=72 Score=37.18 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH-----HHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD-----IISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~-----~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
.+.....++..|.....+....-..+...|+.|+..+..|...|++- ++..+-.=+|+.|+.|+++...+...
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~A 522 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEA 522 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 33444444444444444444444555566666666555554443322 33345555677777777777766654
No 191
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.96 E-value=11 Score=38.83 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=8.9
Q ss_pred cccccccccchhcccccC
Q 005743 82 VASHSRVKRSLIGDLACS 99 (679)
Q Consensus 82 ~~~~~r~~~~l~~dl~~~ 99 (679)
|.++-...-.+++.|.+|
T Consensus 36 lRsGPg~~y~Iv~~l~~G 53 (206)
T PRK10884 36 VRSGPGDQYRIVGTLNAG 53 (206)
T ss_pred EEcCCCCCCceEEEEcCC
Confidence 333334444556665554
No 192
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.89 E-value=43 Score=35.02 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=30.5
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
++.+. +.++...+..-.+.-..|..++..++.+..+++.++..
T Consensus 34 rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~ 77 (225)
T COG1842 34 RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL 77 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555 66666666666677777788888888888887776543
No 193
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.85 E-value=50 Score=34.43 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=23.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
...+++-+.=+.|||..+ +..++..-.+-|..|+..+.
T Consensus 126 ~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~ 163 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLS 163 (264)
T ss_pred HHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHH
Confidence 355666666666777664 66666666666666665443
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.80 E-value=96 Score=35.50 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
+.+..|+.+..+.+...++|......|...+.+++.+++
T Consensus 210 k~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666665544
No 195
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.53 E-value=1.1e+02 Score=37.86 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=29.8
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 210 NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 210 ~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
-.+++..+-|+.|+++|.|...+||-..-|-..|++.--.+.+.
T Consensus 312 gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~e 355 (1265)
T KOG0976|consen 312 GDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNE 355 (1265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 34568888899999999888888877665555554444433333
No 196
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.47 E-value=1.3e+02 Score=36.25 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=28.9
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-hccchhhhhHHHHHHHHHHH------HHHHHHHHH
Q 005743 179 GMLEDEKTSLSEQLAALSVILERKNDNKNAI-NMGSSSSQNLEMEVVELRRL------NKELQMEKR 238 (679)
Q Consensus 179 ~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d-~e~e~~l~~LE~EV~ELRR~------NkeLQ~EKr 238 (679)
.+||.++-.|=++|.++-.-.. ++.++ .|.|++++.-|.++-|+++. +.+||+|+.
T Consensus 170 tsLETqKlDLmaevSeLKLklt----alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~k 232 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLT----ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETK 232 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHH----HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777666666665421100 11111 23345555566666666644 456666653
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=29 Score=38.64 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.3
Q ss_pred ccCCcc
Q 005743 323 KASSPN 328 (679)
Q Consensus 323 k~lSpk 328 (679)
++|+|+
T Consensus 33 ~sL~P~ 38 (365)
T KOG2391|consen 33 KSLRPK 38 (365)
T ss_pred cccCcc
Confidence 334443
No 198
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.37 E-value=42 Score=40.90 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----------Hhhhhhhh------hccchhhhhHHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER----------KNDNKNAI------NMGSSSSQNLEMEVVELRRLNKE 232 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q----------~ee~~k~d------~e~e~~l~~LE~EV~ELRR~Nke 232 (679)
+|+..|++++...--++-.+++.|+++..+.+. ++|-...| .+.++.-.+||..+.|+......
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~ 103 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAE 103 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777666666666666666666555552 11111111 12223333677777776666666
Q ss_pred HHHHHHhhhhhhhhh
Q 005743 233 LQMEKRNLACKFSSM 247 (679)
Q Consensus 233 LQ~EKreL~~KL~sA 247 (679)
+--|+..|..-|..-
T Consensus 104 ~~~e~~~l~~~l~~~ 118 (769)
T PF05911_consen 104 SAAENSALSKALQEK 118 (769)
T ss_pred HHhhhHHHHHHHHHH
Confidence 666666655555443
No 199
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.01 E-value=95 Score=39.00 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=24.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
++....+||.++.|++...+..+.+-++-..|+..-
T Consensus 274 i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~ 309 (1072)
T KOG0979|consen 274 IEDKKEELESEKKETRSKISQKQRELNEALAKVQEK 309 (1072)
T ss_pred hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777777777766655444433
No 200
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.73 E-value=33 Score=37.00 Aligned_cols=56 Identities=23% Similarity=0.183 Sum_probs=28.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE 285 (679)
..+.++|.....--..|.=|+-|..|--.=|+ -|-.+++|+.-||++=---.+|-|
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~lle----------------svqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLE----------------SVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556665544444455555544443222222 244778888888885433333333
No 201
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.33 E-value=78 Score=32.95 Aligned_cols=130 Identities=19% Similarity=0.184 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhh----------H
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTS----------L 188 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~r----------L 188 (679)
+.+|..|+..|..|++.--+-|..+... +|.+- .-|-.+.++.-.+..+.+.-++..++++.+. =
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778777777776666666555555 22222 4444444444344444444444444333222 2
Q ss_pred HHHHHHHHHHHHHH-hhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 189 SEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 189 q~qv~e~~~~~~Q~-ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
.+.|+....+++.. +.+..+-.-++..+..|+-+..=|...++-|.--.-.+..+++..+.+|..
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ 148 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKE 148 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23333333333321 222222222246666666666666666666665555555555555554443
No 202
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.02 E-value=49 Score=38.90 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhh-h------hchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 134 LQESKEREFKLQAELSEW-K------RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 134 V~eLqERE~kLE~ELlEy-K------EQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
+..|..+-.+++.+|.+. + ..|.+.+|+..+..-..++..++..+..++.+.+.+..++..+..
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444 1 112266666666666666666666666666666666655555443
No 203
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.96 E-value=69 Score=36.80 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=27.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
-++-+||.||.+||.-|--|..|+.+|--..-+-
T Consensus 403 aRe~eleqevkrLrq~nr~l~eqneelngtilTl 436 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNRILSEQNEELNGTILTL 436 (502)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhH
Confidence 5678899999999999999999999975544433
No 204
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.84 E-value=22 Score=39.09 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (679)
Q Consensus 220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv 299 (679)
..-|..-+|...+|++|++-|-+-|.-|.-.++.+.. +|| +.-...|+.+. =|+++.+.|---..|+.
T Consensus 58 aNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~-----vvA------NEWKD~nDkvM-PVKqWLEERR~lQgEmQ 125 (351)
T PF07058_consen 58 ANAVRDYQRQVQELNEEKRTLERELARAKVSANRVAT-----VVA------NEWKDENDKVM-PVKQWLEERRFLQGEMQ 125 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----hhc------ccccccCCccc-cHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999888766665544 232 44556665554 67788877777777777
Q ss_pred HHH
Q 005743 300 YLR 302 (679)
Q Consensus 300 ylR 302 (679)
.||
T Consensus 126 ~Lr 128 (351)
T PF07058_consen 126 QLR 128 (351)
T ss_pred HHH
Confidence 653
No 205
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=79.81 E-value=6.9 Score=45.46 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=29.6
Q ss_pred hhhhHHhhhccchhHHHHHHHHHhhHHHHHHHHHHhhhhhcccHHHHHH
Q 005743 558 RSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVA 606 (679)
Q Consensus 558 r~~migEi~nRSs~l~aIk~Dvet~~~~I~~L~~eV~~~~~~dmedv~~ 606 (679)
--+||-++.|-.-|+= |+-=.-.|..+--.|...|..| ..+|.|+..
T Consensus 362 ~e~Iv~~~~nEyevvY-iKpLAg~YktiKKqlenhv~af-ntNitdmLd 408 (574)
T PF07462_consen 362 PENIVPEGINEYEVVY-IKPLAGMYKTIKKQLENHVNAF-NTNITDMLD 408 (574)
T ss_pred hhhhhcCcCCccceEE-ecchHHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 3477888888776653 5555556665655666666666 556666554
No 206
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=79.34 E-value=2.4 Score=47.79 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=9.6
Q ss_pred CccccchhHHHHHHH
Q 005743 519 GVVQRAPQVVEFYHS 533 (679)
Q Consensus 519 ~kv~RaP~vvefY~S 533 (679)
....-.++++++|.+
T Consensus 365 a~pp~~~pl~~~~p~ 379 (518)
T KOG1830|consen 365 APPPTNPPLCNPFPS 379 (518)
T ss_pred CCCCCCCCCCCCCcc
Confidence 333445788888884
No 207
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.16 E-value=21 Score=43.06 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSE 150 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlE 150 (679)
.+++..+++.+..|++|-.-+|.+|-.
T Consensus 104 da~lrq~eekn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 104 DADLRQNEEKNRSLQERLELAEPKLQQ 130 (916)
T ss_pred chhhchhHHhhhhhhHHHHHhhHhhHh
Confidence 456666666777776664444444433
No 208
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.86 E-value=1e+02 Score=35.73 Aligned_cols=128 Identities=23% Similarity=0.220 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQA-------ELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~-------ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
..+|..|+.-+....+.+..-+. .+... .-... +.+.+..|...+.++..|...+.+|+.+..+....+..
T Consensus 248 ~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 248 SAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655554443311 11111 22222 55556667777777777777777777776666555544
Q ss_pred HHHHHH-----------H------Hhhh-----hhhh---hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 195 LSVILE-----------R------KNDN-----KNAI---NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 195 ~~~~~~-----------Q------~ee~-----~k~d---~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
...-.. + +=++ .+.+ .++...|+.|-.|+.+.|+.....+.|.+.+..-++.+.+
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321111 0 0000 0011 1223566666666666666666666666655555555544
Q ss_pred Hh
Q 005743 250 QL 251 (679)
Q Consensus 250 ~~ 251 (679)
.+
T Consensus 408 ~i 409 (522)
T PF05701_consen 408 AI 409 (522)
T ss_pred HH
Confidence 43
No 209
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=78.72 E-value=1.7 Score=51.88 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=8.7
Q ss_pred CcchhHHHHhhc
Q 005743 353 GRRLSFIKKFKK 364 (679)
Q Consensus 353 sKk~~li~KLKk 364 (679)
.=|+-||..|||
T Consensus 850 ~FKTEf~t~L~k 861 (1106)
T KOG0162|consen 850 PFKTEFITLLKK 861 (1106)
T ss_pred hhHHHHHHHHHH
Confidence 557777777777
No 210
>PLN02939 transferase, transferring glycosyl groups
Probab=78.49 E-value=72 Score=39.94 Aligned_cols=86 Identities=24% Similarity=0.236 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---------------HHHHHHHHHHhHh--------HHHHHHHHHh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK---------------VLELERELEAKKI--------ENDEIVRRVG 179 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~---------------I~ELqrqL~~k~~--------Ei~~Lk~kI~ 179 (679)
+..|++.||..=..|++.-.-|..+|.+.+|-+. ++||+..+-.... +.+.+=.+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 5778888887777777777777777776622222 6677766654332 5566777777
Q ss_pred hhHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 005743 180 MLEDEKTSLSEQLAALSVILERKNDNKNA 208 (679)
Q Consensus 180 sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~ 208 (679)
.||.=-.+.-.|+.....+..|.++..++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (977)
T PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDK 332 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88777777777777777776665544333
No 211
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.35 E-value=17 Score=43.04 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=27.9
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 114 r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
+++..+-..+..+|..|..+|+.|+++-..|+.++.++
T Consensus 411 ~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~ 448 (652)
T COG2433 411 EEERREITVYEKRIKKLEETVERLEEENSELKRELEEL 448 (652)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677888888888888888888888777777
No 212
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.12 E-value=1.4e+02 Score=34.62 Aligned_cols=85 Identities=8% Similarity=0.162 Sum_probs=49.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
.++.+++..+..+++.....-....++...++.++.++..+.+. +. .+..++++...++..=..+..++-..+..-..
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~-~~-~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS-DE-SLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444445556777777777777666553 22 34566777776666666666666666555555
Q ss_pred hHHHHHH
Q 005743 294 EVEELAY 300 (679)
Q Consensus 294 dvEELvy 300 (679)
.+++-|.
T Consensus 379 ~l~~~v~ 385 (563)
T TIGR00634 379 RLAKRVE 385 (563)
T ss_pred HHHHHHH
Confidence 5555543
No 213
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.07 E-value=27 Score=30.53 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHH
Q 005743 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (679)
Q Consensus 158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq 189 (679)
.+|+..++..-..|..|+++|.-|+.++..|.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555555566666666666666555444
No 214
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=77.41 E-value=3.7 Score=41.94 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=9.0
Q ss_pred hhhcccccccCCCccc
Q 005743 408 AEELMPNKRRQSDGFM 423 (679)
Q Consensus 408 ~e~~~~~~r~~~d~~~ 423 (679)
.|+++..||-.|-||+
T Consensus 86 VEsVVV~k~~RG~GFG 101 (225)
T KOG3397|consen 86 VESVVVKKDQRGLGFG 101 (225)
T ss_pred EEEEEEehhhccccHH
Confidence 4666655555555554
No 215
>PHA03247 large tegument protein UL36; Provisional
Probab=77.40 E-value=4 Score=54.40 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHHHH
Q 005743 216 SQNLEMEVVELRRLN 230 (679)
Q Consensus 216 l~~LE~EV~ELRR~N 230 (679)
|.+|..++.+|||..
T Consensus 1706 L~~lR~~ld~Lrr~l 1720 (3151)
T PHA03247 1706 LGETRRRTEALRRSL 1720 (3151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 216
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=77.28 E-value=12 Score=38.85 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=50.7
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 115 RQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 115 ~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
.+.....|.+.+.-.+...++.|++.+.+|..-|..-+.-+.+.++|++|..-..||+.+..++..|..
T Consensus 122 ~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 122 SRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred eeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778999999999999999999999998876654443333777888777666666666655555443
No 217
>PF14992 TMCO5: TMCO5 family
Probab=77.02 E-value=28 Score=37.64 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=52.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR 238 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKr 238 (679)
.|++.++.-+....-|=++|.--|...++|..+++....+....++.-..-.+-+..+++||.|-.-|-+.|.-|-+--.
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~ 87 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQ 87 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhh
Confidence 44455554444444566777778888888888888777665543221111122356678888888778777777744444
Q ss_pred hhhhhhh
Q 005743 239 NLACKFS 245 (679)
Q Consensus 239 eL~~KL~ 245 (679)
||-.+.+
T Consensus 88 elq~k~~ 94 (280)
T PF14992_consen 88 ELQRKQD 94 (280)
T ss_pred hhhhhhc
Confidence 4444433
No 218
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.98 E-value=37 Score=35.61 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=22.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
+....+++.+...|+......+.++..|..++..++..+..+
T Consensus 53 e~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l 94 (246)
T PF00769_consen 53 EQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARL 94 (246)
T ss_dssp HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577888888888888888888888888888887666543
No 219
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=76.73 E-value=20 Score=41.94 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=41.3
Q ss_pred CchhhhhhhHHhhhccchhHHHHHHHHHhhHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhhhhhHHHHHhhc
Q 005743 553 NVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHF 628 (679)
Q Consensus 553 ~~a~~r~~migEi~nRSs~l~aIk~Dvet~~~~I~~L~~eV~~~~~~dmedv~~Fv~wlD~eLs~LsDEraVLk~F 628 (679)
..++.|-.+|-=|.-+..=|-.=-.++-+....|..|-.++++.. . + ..|-..|..+++...|+..|
T Consensus 301 ~tpd~RcRvvNALl~g~~GL~L~p~ec~sW~~avaaL~~RthG~~-p----l----H~L~~vL~~ia~~EGv~~A~ 367 (582)
T PF03276_consen 301 TTPDLRCRVVNALLGGHLGLALTPNECGSWASAVAALYQRTHGSY-P----L----HQLADVLRGIANQEGVATAY 367 (582)
T ss_pred CCccHHHHHHHHHhcCCCccccCccccccHHHHHHHHHHHhcccc-h----H----HHHHHHHHHHhhhhhHHHHH
Confidence 445667677766666665555555666677777777777777652 1 1 13345566677777776666
No 220
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.26 E-value=45 Score=41.84 Aligned_cols=165 Identities=14% Similarity=0.104 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh-------HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEW-----KRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEy-----KEQE~-------I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
.|..+..-+..|+.++..++..+.+. |++.. +.|....+.-.+.++..|.+.|.++++..++++.+..
T Consensus 815 ~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~ 894 (1141)
T KOG0018|consen 815 SVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERH 894 (1141)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34444444455556666666555444 22222 4444555555566888888999999999888888877
Q ss_pred HHHHHHHHHhhh------hhhhhc--cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHH
Q 005743 194 ALSVILERKNDN------KNAINM--GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISK 265 (679)
Q Consensus 194 e~~~~~~Q~ee~------~k~d~e--~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~ 265 (679)
.+....+=++-. ..-|.. ++-.-.+|..+.. |++...+.|.....++=-|- ++....+-. ++.
T Consensus 895 ~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~~Pn~k-------A~~~~d~v~-~~~ 965 (1141)
T KOG0018|consen 895 NLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLNRIAPNLK-------ALERLDEVR-FQE 965 (1141)
T ss_pred HHHHHhhhccccccccCCCccccceecccccccccHHHH-HHHHHHHHHHHHHHhCcchH-------HHhhhhhHH-HHH
Confidence 776655522211 111111 1212223333332 33333333333332221111 111211222 456
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743 266 IKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (679)
Q Consensus 266 ~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv 299 (679)
+.+|..+.|..--....+++.....|..-|.+.-
T Consensus 966 ~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F 999 (1141)
T KOG0018|consen 966 INEEFEAARKEAKKAKNAFNKVKKKRYERFMACF 999 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777888888888888877666554
No 221
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=10 Score=44.76 Aligned_cols=59 Identities=32% Similarity=0.384 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW-----------KRNPK----VLELERELEAKKIENDEIVRRVGMLE 182 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----------KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLE 182 (679)
+.|+..|+..|.+|+..-.+|+.+|.++ +|-+. |..|++.|..+..++++|+.+++.|+
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554 11111 45555555555555666655555544
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.70 E-value=99 Score=32.07 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.++.+...++....-+...+.+..++ .++.. ++.|++++..-...+..|...|.+++.+..+|+.++.+......
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655555 22222 55666666666666666666666666666666666655554444
No 223
>COG5293 Predicted ATPase [General function prediction only]
Probab=75.54 E-value=1.7e+02 Score=34.22 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhchh--HHHHH--HHHHHhHhHHHHHH---HHHhhhHHHhhhHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW------KRNPK--VLELE--RELEAKKIENDEIV---RRVGMLEDEKTSLSE 190 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy------KEQE~--I~ELq--rqL~~k~~Ei~~Lk---~kI~sLEaE~~rLq~ 190 (679)
..+|.-++..|+.|.... || .++++. +-.|. +.|+| .++..+++.+..+. +.-+-++++-+.+++
T Consensus 192 ~~~~~~~~dKi~~l~s~k-Kl-~e~~~~~~ig~L~slee~e~~e~~~~~~v~~k~~tln~f~~~a~~y~e~ee~vn~v~~ 269 (591)
T COG5293 192 GKCAAEYYDKIQELESKK-KL-AELLRKTWIGSLDSLEEIETTELRKQDEVNKKQATLNTFDFHAQDYAETEELVNTVDE 269 (591)
T ss_pred chHHHHHHHHHHHHHHHH-HH-HHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 356777788887776543 33 334442 22222 44444 55555666555555 566777788888888
Q ss_pred HHHHH--HHHHHH----------Hhhh---------------------hhhhh---------ccchhhhhHHHHHHHHHH
Q 005743 191 QLAAL--SVILER----------KNDN---------------------KNAIN---------MGSSSSQNLEMEVVELRR 228 (679)
Q Consensus 191 qv~e~--~~~~~Q----------~ee~---------------------~k~d~---------e~e~~l~~LE~EV~ELRR 228 (679)
++++. ..+..| +.+. .+++. .++.+=.=|-.|++++++
T Consensus 270 ~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~ 349 (591)
T COG5293 270 RIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEG 349 (591)
T ss_pred HHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88772 222222 1111 12221 124555567789999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 229 LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 229 ~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
..+++..++++|..++...=+-+.. .+.-| ....+.+|+-.+|.+=-.|-.+++.++.
T Consensus 350 dLk~~n~~~~~l~~~rae~l~~Lk~-~g~~e--~y~~l~ee~~~~~~elae~~~rie~l~k 407 (591)
T COG5293 350 DLKEVNAELDDLGKRRAEGLAFLKN-RGVFE--KYQTLCEEIIALRGELAELEYRIEPLRK 407 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcHH--HHHHHHHHHHHHhhhHHHHHHhhhHHHH
Confidence 9999999999999988654322211 11112 1223456666666555555555555543
No 224
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=75.52 E-value=6.4 Score=43.93 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=19.3
Q ss_pred hhhhhhhHHhhhccchhHHHHHHHHHhhHHHHHH
Q 005743 555 ANVRSSMIGEIENRSSHLLAIKADVATQGEFVNS 588 (679)
Q Consensus 555 a~~r~~migEi~nRSs~l~aIk~Dvet~~~~I~~ 588 (679)
++.-=+|-.=|+=|+.|..++-..--.+..|...
T Consensus 256 TFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~ 289 (457)
T KOG0559|consen 256 TFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSG 289 (457)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhH
Confidence 3444467666777888887764443333344333
No 225
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=75.47 E-value=3.6 Score=39.77 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=35.4
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q 191 (679)
+..|+ +.+||.++..+..||+.|+.++..+...|.+|+..
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566 88999999999999999999999999999999764
No 226
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=75.37 E-value=12 Score=34.54 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-------------HHHHHHHHHHhHhHHHHHHHHHhhhHHHhh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-------------VLELERELEAKKIENDEIVRRVGMLEDEKT 186 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-------------I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~ 186 (679)
+.|-+-||..|.+|++....|..||..| .+.+. -..||-.|+....||..|..+|--||-||.
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYENR 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 6889999999999999999999999999 33331 257888898888899999999999999986
Q ss_pred h
Q 005743 187 S 187 (679)
Q Consensus 187 r 187 (679)
-
T Consensus 94 v 94 (96)
T PF11365_consen 94 V 94 (96)
T ss_pred c
Confidence 3
No 227
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=75.30 E-value=1.4e+02 Score=32.99 Aligned_cols=182 Identities=19% Similarity=0.216 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh----HHHHHHHHHH------------------hHhHHHHHHHHHhh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK----VLELERELEA------------------KKIENDEIVRRVGM 180 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~----I~ELqrqL~~------------------k~~Ei~~Lk~kI~s 180 (679)
+..||.+||--|--++-.-+.-|-... ++-+. ..+||+-|++ -++|-.+|+-++..
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~--ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYL--EDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 456788888777555433222222222 33333 3345555554 33344444444433
Q ss_pred hHHHhhhHHHHHHHHHH----HHHH--Hhhhhhhhhccc-hh--------hhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 181 LEDEKTSLSEQLAALSV----ILER--KNDNKNAINMGS-SS--------SQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 181 LEaE~~rLq~qv~e~~~----~~~Q--~ee~~k~d~e~e-~~--------l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
=..-.+||+.+|.-|.. +... +-.++++|.+.. ++ -..|-.+|-.||..|. =|..+|+
T Consensus 82 EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne-------~LsQqLs 154 (305)
T PF14915_consen 82 EKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNE-------ILSQQLS 154 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhH-------HHHHHHH
Confidence 33334455555544421 1111 234566665542 11 2234555555554444 4566677
Q ss_pred hhHHHhhhhhccchhHHH-HHHHHHHHHhhhcChHHH-----------------HHHHHHhhhhhchHHHHHHHHHHHHH
Q 005743 246 SMENQLTSLAKASESDII-SKIKAEALVLRHTNEDLS-----------------KQVEGLQMSRLNEVEELAYLRWVNSC 307 (679)
Q Consensus 246 sAe~~~~~~~~~~Es~~V-a~~~eE~~~LR~~Ne~L~-----------------~QlE~l~~~Re~dvEELvylRwiNac 307 (679)
-||+++++|-+ |-.-+ ..+++-.-.|-+.-.||. .+|..+-.-.+.--|-|.++...|.+
T Consensus 155 kaesK~nsLe~--elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~L 232 (305)
T PF14915_consen 155 KAESKFNSLEI--ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENML 232 (305)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766543 11101 122232223333333332 22222333333334445577778889
Q ss_pred HHHhhhhh
Q 005743 308 LRDELQNS 315 (679)
Q Consensus 308 LR~EL~d~ 315 (679)
||.-|+|.
T Consensus 233 LrQQLddA 240 (305)
T PF14915_consen 233 LRQQLDDA 240 (305)
T ss_pred HHHHHHHH
Confidence 99988887
No 228
>PRK15313 autotransport protein MisL; Provisional
Probab=75.23 E-value=3 Score=50.99 Aligned_cols=9 Identities=22% Similarity=0.157 Sum_probs=5.2
Q ss_pred HHhhccccC
Q 005743 532 HSLMKRDSR 540 (679)
Q Consensus 532 ~SL~~re~~ 540 (679)
.+|..|.|.
T Consensus 655 ~tLhDR~GE 663 (955)
T PRK15313 655 TRLHDRLGE 663 (955)
T ss_pred ccHHHhCCC
Confidence 566666543
No 229
>PRK11281 hypothetical protein; Provisional
Probab=75.17 E-value=1.6e+02 Score=37.65 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh-------HHHHHHHHHHhH--------hHHHHHHHHHhhh
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK-------VLELERELEAKK--------IENDEIVRRVGML 181 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----KEQE~-------I~ELqrqL~~k~--------~Ei~~Lk~kI~sL 181 (679)
.+++.+..+...++..|+.-..+..+|... +-|.. +.|++++|..-. ++...|..+...|
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l 204 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL 204 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 356666666666666666666666666655 11211 445555554311 3455566666666
Q ss_pred HHHhhhHHHHHHHHHHHHH----HHhhh----hhhh-------hcc-chhhhhHHHHHHHHHHH-----------HHHHH
Q 005743 182 EDEKTSLSEQLAALSVILE----RKNDN----KNAI-------NMG-SSSSQNLEMEVVELRRL-----------NKELQ 234 (679)
Q Consensus 182 EaE~~rLq~qv~e~~~~~~----Q~ee~----~k~d-------~e~-e~~l~~LE~EV~ELRR~-----------NkeLQ 234 (679)
++++.-++-++........ |.+.. ...+ ..+ ++++++-|.-+.|.++. ..++.
T Consensus 205 ~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~ 284 (1113)
T PRK11281 205 NAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQEL 284 (1113)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHH
Confidence 6665555444432222111 11000 0001 111 25555555555554331 23344
Q ss_pred HHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743 235 MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 235 ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
..|++|...|...-.+++.+.. +. ..++..+..+++.-..+.+|++.+..+
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~--~~---~~~~~~l~~~~q~~~~i~eqi~~l~~s 335 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQ--QN---LRVKNWLDRLTQSERNIKEQISVLKGS 335 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5688888888888777777644 22 356788888888888888888877654
No 230
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.14 E-value=60 Score=32.34 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
..++.|..+|+.....||.+++.|..++...-.+++.+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rl 122 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRL 122 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 56777788888888888888888888887765555444
No 231
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=74.88 E-value=1e+02 Score=35.86 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh-cccccccc
Q 005743 279 DLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS-CSTTNSEK 323 (679)
Q Consensus 279 ~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~-~sa~Dl~k 323 (679)
....+++.-...++.+|+-|.. ||-|+.+. .||+||-|
T Consensus 446 sqclEmdk~LskKeeeverLQ~-------lkgelEkat~SALdlLk 484 (527)
T PF15066_consen 446 SQCLEMDKTLSKKEEEVERLQQ-------LKGELEKATTSALDLLK 484 (527)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4556666666667766666665 55666666 47777655
No 232
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=74.75 E-value=1.8e+02 Score=36.27 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH-HHHHHHH----Hhhhhhhhhc-c-chhhhhHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA-LSVILER----KNDNKNAINM-G-SSSSQNLEMEVVELRRL 229 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e-~~~~~~Q----~ee~~k~d~e-~-e~~l~~LE~EV~ELRR~ 229 (679)
|.||++-|...+-++..+++-=..-++..+.|-.++.+ +....+| ++.++++..+ . ..-.+++|.|+..+|-.
T Consensus 931 i~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrse 1010 (1424)
T KOG4572|consen 931 IEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSE 1010 (1424)
T ss_pred HHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhh
Confidence 66777777766666776666655555555555555432 2222222 2334444322 2 24566677766666666
Q ss_pred HHHHHHHHHhhhhhhhhhH
Q 005743 230 NKELQMEKRNLACKFSSME 248 (679)
Q Consensus 230 NkeLQ~EKreL~~KL~sAe 248 (679)
|.++-.++.......+..+
T Consensus 1011 lEe~kKe~eaiineiee~e 1029 (1424)
T KOG4572|consen 1011 LEEKKKELEAIINEIEELE 1029 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444333
No 233
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.27 E-value=3.3 Score=47.10 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=9.4
Q ss_pred cccCCcchhHHHHhhcC
Q 005743 349 EYSGGRRLSFIKKFKKW 365 (679)
Q Consensus 349 ~~s~sKk~~li~KLKkW 365 (679)
+||---|-...+++||=
T Consensus 320 dfSDDEkEaeak~~kKQ 336 (483)
T KOG2236|consen 320 DFSDDEKEAEAKQMKKQ 336 (483)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 44445555666666553
No 234
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=2.2e+02 Score=34.76 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
+-+..++++..|..+...|.+++..+
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l 515 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTL 515 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 235
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.11 E-value=2e+02 Score=34.38 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=36.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH-HH--HHHHhhhhchh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhh
Q 005743 120 SRDLFLELDSLRSLLQESKEREFK-LQ--AELSEWKRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~k-LE--~ELlEyKEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~r 187 (679)
..++.+||++|-.-+..-.+.... -+ ..|++-|++-. +.||+-.+.....|++.++..+...++..++
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk 82 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK 82 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888877665433222211 11 23333333333 6667766666666777666666555554443
No 236
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=74.09 E-value=1 Score=49.98 Aligned_cols=9 Identities=0% Similarity=0.383 Sum_probs=0.0
Q ss_pred hHHHHHHHh
Q 005743 526 QVVEFYHSL 534 (679)
Q Consensus 526 ~vvefY~SL 534 (679)
.+-+||+--
T Consensus 50 ~LEdLF~~Y 58 (386)
T PF01698_consen 50 GLEDLFQGY 58 (386)
T ss_dssp ---------
T ss_pred hHHHHHhhc
Confidence 555666543
No 237
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.99 E-value=2.2e+02 Score=34.70 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-----------hccchhhhhHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI-----------NMGSSSSQNLEMEVVE 225 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d-----------~e~e~~l~~LE~EV~E 225 (679)
+.-|+.+.+..-.++..+..++..|++.-++|.+.+.+.....+ ...+|- ..+-..-+++-.|+..
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe---~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~ 643 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQE---KLMKRVDRVLQLLNSQLPVLSEAEREFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 44444444444456666777777777666666665444332222 111111 1121333445555555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 226 LRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 226 LRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
|+.....|+.--.++..|++.-+.++
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444433
No 238
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=73.95 E-value=18 Score=31.75 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
..+..|+..+..+....+.|..+...+..+|...+..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444
No 239
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.79 E-value=1e+02 Score=34.60 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
+..+|..|...+..++.+...++..+..+
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666666655444
No 240
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=73.67 E-value=1.7e+02 Score=33.50 Aligned_cols=48 Identities=31% Similarity=0.380 Sum_probs=34.3
Q ss_pred HHHHHHHHhhh-------------cChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 265 KIKAEALVLRH-------------TNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 265 ~~~eE~~~LR~-------------~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
.+-+|++.||- +|+.=.=++|+|..-+++ |+.||+-.=.|||.||.-+
T Consensus 478 RLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEs---EiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 478 RLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKES---EIQYLKQEISSLKDELQTA 538 (593)
T ss_pred HHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 34466666662 455556678899888876 5678888888999999644
No 241
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=73.62 E-value=48 Score=35.90 Aligned_cols=25 Identities=16% Similarity=0.132 Sum_probs=12.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKR 238 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKr 238 (679)
.-+.+|..+|+-|.-+..-||.+..
T Consensus 264 dfm~eLdedVEgmqsTiliLQq~Lk 288 (330)
T KOG2991|consen 264 DFMEELDEDVEGMQSTILILQQKLK 288 (330)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444555555555555555554433
No 242
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=72.95 E-value=5.5 Score=47.77 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESK 138 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLq 138 (679)
..=++.||.+...+.
T Consensus 208 ~A~v~aLrilganM~ 222 (759)
T PF05518_consen 208 TACVEALRILGANME 222 (759)
T ss_pred hHHHHHHHHHHhhhh
Confidence 345667777766554
No 243
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.66 E-value=30 Score=34.99 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=48.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
+....+...+.+|.+.+.+++.+..+|..+|+.+... ..+++--..+.++...|+.....|..+++.+...--.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~------r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG------REESEEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4455666666666666666666666666666666422 1233333456788888888888888888866554333
Q ss_pred hHHHH
Q 005743 294 EVEEL 298 (679)
Q Consensus 294 dvEEL 298 (679)
-++++
T Consensus 136 ~i~~~ 140 (188)
T PF03962_consen 136 KIEKL 140 (188)
T ss_pred HHHHH
Confidence 33333
No 244
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=72.21 E-value=1.1e+02 Score=36.83 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
+..+..+|....+.+..+...+.+++.++..|++.+..+.....+-+.......-+.+.+..|..++.+|++....|-.+
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666677777777777663222222100000000001123455555555555555555555
Q ss_pred HHhhhhhhhh
Q 005743 237 KRNLACKFSS 246 (679)
Q Consensus 237 KreL~~KL~s 246 (679)
..++...++.
T Consensus 264 ~~~~~~~~~~ 273 (670)
T KOG0239|consen 264 VSLLTREVQE 273 (670)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 245
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.55 E-value=1.3 Score=52.33 Aligned_cols=72 Identities=28% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
..|+..|+..|..|+.+-..++.+.... -+.|. +.++++++.....++..|...+..|..+...+++.+.+.
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~ 133 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEA 133 (722)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887766655555544433 34444 777777777777777777777777777766666655543
No 246
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.33 E-value=30 Score=30.02 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq 189 (679)
++.+|..|++.+..+..+-...+.++..+ +|.+. .-++|..+-.++..|+.++..|+.|...+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~---~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDS---AERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777766666666666555 55554 123555566677777777777777655443
No 247
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.18 E-value=20 Score=37.84 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=77.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH------H-------h---------hhhh----ccchhHHHHH
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN------Q-------L---------TSLA----KASESDIISK 265 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~------~-------~---------~~~~----~~~Es~~Va~ 265 (679)
+++.+..++.++.+.+..|..|+.+...+-.-.+.... - + +.-+ ....+.|+.-
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpI 83 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPI 83 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHH
Confidence 35677888889999999999998877665532111110 0 0 0000 1246678888
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 266 IKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 266 ~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
|-..-+++|..|.+|..++..+......--.|+--|+=+|.-| ||--.|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL-YEKiRy 132 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL-YEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999998888888888889999887 777776
No 248
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.55 E-value=86 Score=33.93 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=12.8
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHH
Q 005743 173 EIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 173 ~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.+...|..|+++...++.++++.
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555543
No 249
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=70.43 E-value=6.2 Score=47.34 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=2.2
Q ss_pred ccCCCC
Q 005743 467 RVLRVP 472 (679)
Q Consensus 467 r~~rvp 472 (679)
+....+
T Consensus 313 ~~~~~~ 318 (833)
T KOG1922|consen 313 RESPPP 318 (833)
T ss_pred cccCCC
Confidence 333333
No 250
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.95 E-value=2e+02 Score=34.32 Aligned_cols=80 Identities=23% Similarity=0.193 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhh-h----------hhhh------hccchhhhhH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKND-N----------KNAI------NMGSSSSQNL 219 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee-~----------~k~d------~e~e~~l~~L 219 (679)
|--||+.|..+...+..|+-+.++|-+--.+++..+.....+.+|++| - -++. .+....++.|
T Consensus 347 v~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~l 426 (654)
T KOG4809|consen 347 VNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQL 426 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHH
Confidence 666667666666777777777777777777777777776666665332 1 1111 1223666777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005743 220 EMEVVELRRLNKELQME 236 (679)
Q Consensus 220 E~EV~ELRR~NkeLQ~E 236 (679)
|.|+-+-|...+-.|-+
T Consensus 427 e~e~~~y~de~~kaqae 443 (654)
T KOG4809|consen 427 EKEASYYRDECGKAQAE 443 (654)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76666666555444443
No 251
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=69.55 E-value=6.4 Score=44.39 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=9.0
Q ss_pred hhhhhHHhhhccchhH
Q 005743 557 VRSSMIGEIENRSSHL 572 (679)
Q Consensus 557 ~r~~migEi~nRSs~l 572 (679)
+..+|-+|+..|-.|.
T Consensus 258 ~~~~l~a~~~~~~~~~ 273 (409)
T KOG4590|consen 258 GMASLMAEMAKRLARR 273 (409)
T ss_pred hhhhhhhhhhhcccee
Confidence 3445567766665543
No 252
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.45 E-value=1.5e+02 Score=30.89 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=15.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
.+.....+.|+.-|+..++..|+...-|...|+
T Consensus 153 ~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 153 AQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444444444433
No 253
>PRK11519 tyrosine kinase; Provisional
Probab=69.12 E-value=66 Score=38.41 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELE 161 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELq 161 (679)
..-++-|...+..++.+=...|..|.+||.+.-+.++.
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~ 303 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLP 303 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 34566777777777777777777777885554433333
No 254
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=69.04 E-value=2.8 Score=54.15 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=4.6
Q ss_pred HHhhcccc
Q 005743 532 HSLMKRDS 539 (679)
Q Consensus 532 ~SL~~re~ 539 (679)
.+|..|.|
T Consensus 1501 ~tLhdR~G 1508 (1806)
T PRK14849 1501 HRLHDRLG 1508 (1806)
T ss_pred hhHHHhcC
Confidence 46666644
No 255
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=68.82 E-value=1.5e+02 Score=30.64 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=23.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhh
Q 005743 124 FLELDSLRSLL----QESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGML 181 (679)
Q Consensus 124 ~~EI~~Lr~~V----~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sL 181 (679)
..+|+.|+... ...+.+..+|....... +.+|+.+|.....++..|+.++..|
T Consensus 17 ~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q-----~~~Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 17 EKKIEKLWKQYIQQLEEIQRERQELVSRYAKQ-----TSELQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666665543 33344444444332211 3444444444444444444444333
No 256
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.74 E-value=1e+02 Score=35.70 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
+.+++++..|..++|..|+-|....--...+|.-.+.+ +.+.+-...+.++ ||.+||..+..
T Consensus 388 q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~--------~~~~~~s~d~~I~-------dLqEQlrDlmf 449 (493)
T KOG0804|consen 388 QTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER--------EKEALGSKDEKIT-------DLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-------HHHHHHHhHhe
Confidence 34556666666666666666655544444444443322 2222223345555 66666665544
No 257
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=68.59 E-value=24 Score=34.75 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=7.4
Q ss_pred chhHHHHHHHhhcc
Q 005743 524 APQVVEFYHSLMKR 537 (679)
Q Consensus 524 aP~vvefY~SL~~r 537 (679)
.+.+..+|..|.+-
T Consensus 41 ~~~i~~~~~~L~~v 54 (157)
T PF07304_consen 41 EQPIEEVLRELQRV 54 (157)
T ss_dssp ---HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 45566777777653
No 258
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=68.55 E-value=2.8e+02 Score=33.69 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=15.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 005743 120 SRDLFLELDSLRSLLQESKEREF 142 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~ 142 (679)
+.++..||+.+=.+|-+|||++.
T Consensus 132 lg~l~~EIe~~~~~vfemeE~R~ 154 (683)
T PF08580_consen 132 LGDLDNEIEECIRLVFEMEEKRH 154 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456777777777777777654
No 259
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=68.00 E-value=2.7e+02 Score=36.09 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.3
Q ss_pred hhhhhhHHhhhccchhHHH
Q 005743 556 NVRSSMIGEIENRSSHLLA 574 (679)
Q Consensus 556 ~~r~~migEi~nRSs~l~a 574 (679)
-+|...|.||+.|-+-+.+
T Consensus 738 ~~R~~ri~el~~~IaeL~~ 756 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDD 756 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566779999988655544
No 260
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.36 E-value=75 Score=28.71 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~ 199 (679)
+-.|+..++..-..|.+|.+.|.-|.++|..|..++.....-+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r 48 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3446666666667899999999999999988887766544433
No 261
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.29 E-value=1.5e+02 Score=36.01 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
+.+|+.+++.-......|..+++.....-+.|...+........
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555554555666667888888877777777776655554
No 262
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.04 E-value=58 Score=31.31 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=54.0
Q ss_pred HHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh-------------------hhhhhccchhhhhHHHH
Q 005743 162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN-------------------KNAINMGSSSSQNLEME 222 (679)
Q Consensus 162 rqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~-------------------~k~d~e~e~~l~~LE~E 222 (679)
.+++...++..-|..++..+-.+...++.++.+.-.+.+.-+.. .+...++++++..||..
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r 85 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777777778888888888877776642110 01113345666677777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 223 VVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 223 V~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
|.-|++.-+.|+.+-.+|..+|..+-
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666666666666666555553
No 263
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.67 E-value=1.1e+02 Score=28.17 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=44.9
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHHH----hhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 179 GMLEDEKTSLSEQLAALSVILERK----NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 179 ~sLEaE~~rLq~qv~e~~~~~~Q~----ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
..|+.....|++.+..+....+.. ..|.++-.+-.......+.|+..|+.....|+.++..+..+|......-..|
T Consensus 35 ~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL 114 (126)
T PF13863_consen 35 EELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFL 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444421 1122221111255567777888888888888888888777777776554444
Q ss_pred hc
Q 005743 255 AK 256 (679)
Q Consensus 255 ~~ 256 (679)
.+
T Consensus 115 ~~ 116 (126)
T PF13863_consen 115 EK 116 (126)
T ss_pred HH
Confidence 43
No 264
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.61 E-value=31 Score=40.18 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=22.4
Q ss_pred hhhHHhhhccchhHHHHHHHHHhhHHHHHHHHHH
Q 005743 559 SSMIGEIENRSSHLLAIKADVATQGEFVNSLIRE 592 (679)
Q Consensus 559 ~~migEi~nRSs~l~aIk~Dvet~~~~I~~L~~e 592 (679)
..++.+|+ ....+|..+|..+..-+..|...
T Consensus 461 ~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~ 491 (585)
T PRK14950 461 GDVLEQLE---AIWKQILRDVPPRSPAVQALLSS 491 (585)
T ss_pred chhHHHHH---HHHHHHHHHHhhcCHHHHHHHhC
Confidence 46677777 33667888888888777777765
No 265
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.44 E-value=2.5e+02 Score=35.67 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=26.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
.+++..|-.||.+|...+..|+.+.-++..+-.+-++.++
T Consensus 784 ~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~ 823 (1200)
T KOG0964|consen 784 LERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN 823 (1200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777776665555555554443
No 266
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.41 E-value=1.9e+02 Score=31.12 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=13.7
Q ss_pred HHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743 269 EALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 269 E~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
+++.|...-..|..+|++|..++. |+-|.|+
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~~~~-~~Re~iF 231 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQAQAQ-DPREVIF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-chHHHhh
Confidence 333333333344444555554444 4444443
No 267
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.25 E-value=1.3e+02 Score=33.61 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
.+..-.-|.++.+...++.++........+.- -+.+|+..-|.+|++-++.||.+.-.+..+|=+++
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emeer------g~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEER------GSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 33444444444444444444444333333322 23457777777999999988888777776665543
No 268
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.98 E-value=78 Score=38.97 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
......|.+..+|....+.+--.-.+|+.++.+.++++.
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qad 886 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQAD 886 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhc
Confidence 556666777777777666666677777777777776653
No 269
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.89 E-value=1.6e+02 Score=29.89 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhc-cchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINM-GSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e-~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
...|..+|..|+.+...|+.++.++..-.++- .++..+ .+...+....||.-|++.|..|-.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~---ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL---EKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888877665443321 111111 1344567788888899998888655
No 270
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.57 E-value=1.3e+02 Score=28.78 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=57.7
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHh
Q 005743 102 PAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVG 179 (679)
Q Consensus 102 ~~~~~~~~~~~~r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~ 179 (679)
+|+-.+..|+.. .....+...=|..+..+|..- +|.......|..- +..++ +.-|++.+..-..++..+.+++.
T Consensus 15 G~~~~~~~~~~~---~~~~~~~~~vin~i~~Ll~~~-~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 15 GYPSDGLLFDSA---EESEDNDVRVINCIYDLLQQR-DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred CCCCCCccCccc---ccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332 233455677788888887433 3444444444444 55555 66666666666677777777777
Q ss_pred hhHHHhhhHHHHHHHHHHHHHH
Q 005743 180 MLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 180 sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
+++++...|+.++.......+.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665555553
No 271
>PF13514 AAA_27: AAA domain
Probab=65.37 E-value=3.6e+02 Score=34.02 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=21.8
Q ss_pred HHhhhccchhHHHHHHHHHhhHHHHHHHHHHhhh
Q 005743 562 IGEIENRSSHLLAIKADVATQGEFVNSLIREVNN 595 (679)
Q Consensus 562 igEi~nRSs~l~aIk~Dvet~~~~I~~L~~eV~~ 595 (679)
+.++..-..-+.+|+.++..+..-+..|+..+..
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3444444445666777777777777777777655
No 272
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=65.16 E-value=71 Score=28.97 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
++..|..++..|..+...|..+..++..+.+
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555544444
No 273
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.93 E-value=45 Score=31.56 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=24.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhc
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAK 256 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~ 256 (679)
++.++..|+.+++-.+-...+|..|+.+|.-.+.+-+++..++.+
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~q 58 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQ 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555544433
No 274
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=64.61 E-value=2.4e+02 Score=31.61 Aligned_cols=68 Identities=22% Similarity=0.484 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743 221 MEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 221 ~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
.-+.+|++.-..|+.|+..-.-|++.-+.-+ ++. +++..+.+.|+. .+.+.+..+.. |-|+|
T Consensus 208 ~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl---~KS--NE~F~~fK~E~e-------kmtKk~kklEK------E~l~w 269 (391)
T KOG1850|consen 208 IMLEEMKQVEGQLKEQLALYMAKYEEFQTTL---AKS--NELFTKFKQEME-------KMTKKIKKLEK------ETLIW 269 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh--HHHHHHHHHHHH-------HHHHHHHHHHH------HHHHH
Confidence 4567888888888888888888888776443 342 234445566665 77888888764 56777
Q ss_pred H-HHHHH
Q 005743 301 L-RWVNS 306 (679)
Q Consensus 301 l-RwiNa 306 (679)
+ +|.|+
T Consensus 270 r~K~e~a 276 (391)
T KOG1850|consen 270 RTKWENA 276 (391)
T ss_pred HHHHhhh
Confidence 7 99875
No 275
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.48 E-value=11 Score=42.04 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=9.1
Q ss_pred hhhhccCCCCCCCCCCCC
Q 005743 463 EVEKRVLRVPNPPPRPSC 480 (679)
Q Consensus 463 ~iekr~~rvp~PPP~ps~ 480 (679)
-|.|-++++++|-+.+|+
T Consensus 386 vvskmaq~l~~~~~a~sP 403 (488)
T KOG3895|consen 386 VVSKMAQLLTRPIAAESP 403 (488)
T ss_pred HHHHhhhccCCCCCCCCC
Confidence 344555666555444444
No 276
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.40 E-value=85 Score=28.82 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh------------hhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN------------KNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~------------~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
.+...+.+++..+..+...|+.+..++..+.+.-+.. .......+..+.+|+..+..|....+.|+.+
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~ 89 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQ 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555521100 0000111244455555555555555555555
Q ss_pred HHhhhhhhhhhHHHh
Q 005743 237 KRNLACKFSSMENQL 251 (679)
Q Consensus 237 KreL~~KL~sAe~~~ 251 (679)
...|..++...|..+
T Consensus 90 ~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 90 EERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 277
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.29 E-value=41 Score=38.66 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhh--chh-H-----HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 135 QESKEREFKLQAELSEWKR--NPK-V-----LELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 135 ~eLqERE~kLE~ELlEyKE--QE~-I-----~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
..|+-.+..++.-+.+.++ ++. + .-+++.|..-.+.++.+..+...++++++.|.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555666665655522 222 2 223333444444555666666666666666653
No 278
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=64.09 E-value=1.9e+02 Score=30.12 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=32.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHhhhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRN---LACKFSSMENQLTSLA 255 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKre---L~~KL~sAe~~~~~~~ 255 (679)
..+++..=.||..||..|..||.+|.| |-|=|+....+.-.|+
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkla 92 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLA 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHh
Confidence 456677778899999999999988765 5678888776654443
No 279
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.87 E-value=90 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
.|+.-++..-..|.+|.+.|.-|.++|+.|+.++.+...
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 344444444557888888888888888888777654443
No 280
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.85 E-value=9.3 Score=44.96 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=4.0
Q ss_pred ccchhhhh
Q 005743 381 VLDKTWVQ 388 (679)
Q Consensus 381 ~~~~~~~~ 388 (679)
-|+.-|-+
T Consensus 440 ~l~~~w~~ 447 (620)
T PRK14948 440 NLEELWQQ 447 (620)
T ss_pred CHHHHHHH
Confidence 45555643
No 281
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.78 E-value=2.3e+02 Score=31.12 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=40.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
..+.+|=.|+.+||..-.++..+--+|+...+..- ..|. ++-++++.+|..-+.+-.++..+......
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~h-----------e~m~-k~~~~~De~Rkeade~he~~ve~~~~~~e 225 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYH-----------EEMI-KLFEEADELRKEADELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444445555555555555555555444433222 2233 45566666666666777777777666555
Q ss_pred hHHHHHH
Q 005743 294 EVEELAY 300 (679)
Q Consensus 294 dvEELvy 300 (679)
-=+||..
T Consensus 226 ~~ee~~~ 232 (294)
T COG1340 226 LHEEFRN 232 (294)
T ss_pred HHHHHHH
Confidence 5555543
No 282
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.70 E-value=1e+02 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=11.6
Q ss_pred HHHHHhhhcChHHHHHHHHHhhhhhchHHH
Q 005743 268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297 (679)
Q Consensus 268 eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEE 297 (679)
+|+..|+..-.....|.+.-..-|+-+++.
T Consensus 115 ee~~klk~~~~~~~tq~~~e~rkke~E~~k 144 (151)
T PF11559_consen 115 EELQKLKNQLQQRKTQYEHELRKKEREIEK 144 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444333334433333
No 283
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=63.64 E-value=14 Score=41.83 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=5.6
Q ss_pred HHHHHHHHHhh
Q 005743 666 CDLALKKMVSL 676 (679)
Q Consensus 666 c~~aL~km~sl 676 (679)
..+.++.|+.|
T Consensus 476 Y~~FMkEM~gL 486 (487)
T KOG4672|consen 476 YNAFMKEMDGL 486 (487)
T ss_pred HHHHHHHHhcc
Confidence 34555555554
No 284
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.59 E-value=84 Score=37.61 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEWKRN 154 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ 154 (679)
-++-|...+..++.+=...|.+|..||.+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666677777777443
No 285
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=63.28 E-value=2.1e+02 Score=31.57 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAE 147 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~E 147 (679)
..++..|...+...+.+...++..
T Consensus 214 ~~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776666665555544
No 286
>PF13514 AAA_27: AAA domain
Probab=63.28 E-value=3.3e+02 Score=34.32 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
.++..++.+...++.....++.+...|..+++..
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666666666666555555555443
No 287
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=62.92 E-value=91 Score=33.72 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh
Q 005743 259 ESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (679)
Q Consensus 259 Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re 292 (679)
|+.++..++..+..++..-+.|...|-.|.+..|
T Consensus 152 e~rv~~el~~K~~~~k~~~e~Ll~~LgeFLeeHf 185 (268)
T PF11802_consen 152 ESRVFQELKTKIEKIKEYKEKLLSFLGEFLEEHF 185 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444455555555555555555555555554444
No 288
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=62.90 E-value=1.9e+02 Score=29.92 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=34.7
Q ss_pred chhhhhHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHhhhhhc---cchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743 213 SSSSQNLEMEVVELRRLNK-ELQMEKRNLACKFSSMENQLTSLAK---ASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~Nk-eLQ~EKreL~~KL~sAe~~~~~~~~---~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
..+|..|+..|.+.+..-. .+++....|...|......+..=-+ .-|..++.++.++.. .|...|+.-.
T Consensus 98 ~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~-------~l~~~i~~Ek 170 (247)
T PF06705_consen 98 NDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEEN-------RLQEKIEKEK 170 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3455555555544443322 2444444555555444432211000 024445555555555 3344444444
Q ss_pred hhhhchHHHHH
Q 005743 289 MSRLNEVEELA 299 (679)
Q Consensus 289 ~~Re~dvEELv 299 (679)
..|+..+.+|.
T Consensus 171 ~~Re~~~~~l~ 181 (247)
T PF06705_consen 171 NTRESKLSELR 181 (247)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 289
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=62.76 E-value=6.8 Score=35.93 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=24.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
..-|..|..++..|.+.|.+|+.+..+|..+|..++.....
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~ 64 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEES 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 35577788888888888888888888888888777654433
No 290
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.72 E-value=2.4e+02 Score=30.58 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSE 150 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlE 150 (679)
+.+|..|..-+..+|..-..|..++.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~ 63 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEE 63 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 291
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.47 E-value=3.8e+02 Score=34.20 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=60.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
-||..||++|++-|....++.=.. --+|...+.+.+.+..+.+|..|+.+|..++.+-+.|++.......+..
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvy-------isee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~ 479 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVY-------ISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKE 479 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceE-------echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 467899999998888766554322 2222233344445555667777777777777777777776654444433
Q ss_pred H-HhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 005743 201 R-KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (679)
Q Consensus 201 Q-~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ 234 (679)
. .++..+.+..++....+|+..-.|++.++..|-
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 122223333345555555555555555555543
No 292
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.11 E-value=1.7e+02 Score=35.02 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=16.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAEL 148 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~EL 148 (679)
..++..++...+......+.+-..|+..+
T Consensus 239 L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 239 LAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666555555555544
No 293
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.90 E-value=2.2e+02 Score=32.82 Aligned_cols=64 Identities=27% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 130 LRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 130 Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
|-++-.++.+|-..|+.+|..+ |.++. +-.|+-+.-++.+.++.++.-.|.+.++||++..++.
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~---~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSR---LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777776 55543 4456677778888889999999999999988776654
No 294
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=60.61 E-value=71 Score=30.71 Aligned_cols=69 Identities=29% Similarity=0.373 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-----------------------HHHHHHHHHHhHhHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-----------------------VLELERELEAKKIENDE 173 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-----------------------I~ELqrqL~~k~~Ei~~ 173 (679)
...-.+...|+..+..+-.+..+++.+|.|. .|.|. +.+|+ ..++.
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~-------er~E~ 81 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELE-------ERKET 81 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHH-------HHHHH
Confidence 3455677888889999999999999998887 33332 11222 24566
Q ss_pred HHHHHhhhHHHhhhHHHHHHHHH
Q 005743 174 IVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 174 Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
|..+|..|+...+++++++.++-
T Consensus 82 Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 82 LELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665543
No 295
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=59.98 E-value=10 Score=45.62 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=13.5
Q ss_pred ccccccccccccccc-ccchhcccccCCCC
Q 005743 74 VTNQKNSIVASHSRV-KRSLIGDLACSMNP 102 (679)
Q Consensus 74 ~vk~~n~~~~~~~r~-~~~l~~dl~~~~~~ 102 (679)
++=.|+++|.++.++ --|||+=.-++++.
T Consensus 511 VtYdi~G~~drNrD~L~~DlieLm~ts~~~ 540 (1106)
T KOG0162|consen 511 VTYDIDGFCDRNRDVLFKDLIELMQTSENP 540 (1106)
T ss_pred eeeecccccccchhHHHHHHHHHHhccchH
Confidence 344566666655433 22334433445444
No 296
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=59.92 E-value=22 Score=41.45 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=8.6
Q ss_pred chhhcccccccCCCc
Q 005743 407 RAEELMPNKRRQSDG 421 (679)
Q Consensus 407 ~~e~~~~~~r~~~d~ 421 (679)
+--+.|+++|.++..
T Consensus 140 ~t~s~~~~~~~s~~~ 154 (817)
T KOG1925|consen 140 PTISVAPSADTSSER 154 (817)
T ss_pred chhhhhcccchhhhh
Confidence 334457777766543
No 297
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.91 E-value=1.2e+02 Score=26.61 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 225 ELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 225 ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.||..+++++.+..+|..+++.++
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 298
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.73 E-value=18 Score=32.04 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=48.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhchh-HHHHHHHHHHhHhHHHHHHHHH
Q 005743 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW--KRNPK-VLELERELEAKKIENDEIVRRV 178 (679)
Q Consensus 116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy--KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI 178 (679)
-..++.|+..++..||..++..+.-=..|.+ +++ .||+. |.+|+.++..+..-+..|+.+|
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg--i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPG--IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677888999999888887777666666 444 88988 9999999999988888877654
No 299
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=59.63 E-value=3.3e+02 Score=31.50 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHH-HHHH--HHhhh----hhhh--hc-cchhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALS-VILE--RKNDN----KNAI--NM-GSSSSQNLEMEVVELRRLNKELQMEKR 238 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~-~~~~--Q~ee~----~k~d--~e-~e~~l~~LE~EV~ELRR~NkeLQ~EKr 238 (679)
.++..+...|..+....+..+.++.+|- ++.. |.+|. +|.. .+ ....... +|..+|+.-..-++.|..
T Consensus 214 ~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~--~el~~l~~E~~~~~ee~~ 291 (511)
T PF09787_consen 214 RESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS--IELEELKQERDHLQEEIQ 291 (511)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch--hcchhhHHHHHHHHHHHH
Confidence 4777778888888888888888888887 2222 21111 2221 11 1111111 566677777777777777
Q ss_pred hhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743 239 NLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 239 eL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
.|-.+++...+.+. ++...+..+...+|.....+..++.-....
T Consensus 292 ~l~~Qi~~l~~e~~--------d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 292 LLERQIEQLRAELQ--------DLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 77777766654442 223344556666666666666666555554
No 300
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.62 E-value=1.8e+02 Score=29.78 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
|.-|+.+|.. +..++..-..+..+.++++.++.+... . ..+.+..+.+||..+.+|++....+-.+
T Consensus 88 V~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~~~--------~--~~~~e~~i~~Le~ki~el~~~~~~~~~~ 153 (190)
T PF05266_consen 88 VKFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEKEA--------E--LKELESEIKELEMKILELQRQAAKLKEK 153 (190)
T ss_pred cHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH--------h--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666654 444444445555555555555554410 0 0123455666666666666665555444
Q ss_pred HHh
Q 005743 237 KRN 239 (679)
Q Consensus 237 Kre 239 (679)
|.+
T Consensus 154 ke~ 156 (190)
T PF05266_consen 154 KEA 156 (190)
T ss_pred HHH
Confidence 444
No 301
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.43 E-value=39 Score=29.30 Aligned_cols=63 Identities=30% Similarity=0.315 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHH--HHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDI--ISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 218 ~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~--Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
.||.++..||..+ .-++.|++..++-...|...-+..+ +..+-++...|+.+++.|.++++..
T Consensus 2 ~Lea~~~~Lr~rL-------d~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRL-------DSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555554444 4455556666655555544222211 1234566676777777776665543
No 302
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=59.03 E-value=1.8e+02 Score=34.10 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHh-HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKI-ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 157 I~ELqrqL~~k~~-Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
-.+++.+|+.-.. .+-.+...|..|++++.+|.+++.+...+-.
T Consensus 251 ~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~ 295 (622)
T COG5185 251 YEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQ 295 (622)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555443 5667888999999999999999988776665
No 303
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.83 E-value=66 Score=34.11 Aligned_cols=49 Identities=31% Similarity=0.317 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh
Q 005743 225 ELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (679)
Q Consensus 225 ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re 292 (679)
-+|..|.+|+.|.+.+... +..++.|+..||..|-.|-+.+.=++....
T Consensus 90 RFR~Rn~ELE~elr~~~~~-------------------~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQT-------------------ISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 3566666666666653222 223456666666666666666666665543
No 304
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.73 E-value=2.1e+02 Score=28.89 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhhh
Q 005743 279 DLSKQVEGLQMSR 291 (679)
Q Consensus 279 ~L~~QlE~l~~~R 291 (679)
++..+|+.+....
T Consensus 193 ~~e~~l~~~~~~~ 205 (221)
T PF04012_consen 193 DLEAELEELERDS 205 (221)
T ss_pred cHHHHHHHhcCCC
Confidence 4666666665443
No 305
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.69 E-value=87 Score=35.98 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 224 VELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 224 ~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.+|-|..++|++||-.|-.-|+.-+
T Consensus 132 n~Lsrkl~qLr~ek~~lEq~leqeq 156 (552)
T KOG2129|consen 132 NPLSRKLKQLRHEKLPLEQLLEQEQ 156 (552)
T ss_pred CchhHHHHHHHhhhccHHHHHHHHH
Confidence 4688999999999988877776655
No 306
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=58.34 E-value=1.2e+02 Score=27.44 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
...++..|+..++.|......|+.++.|.
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888777
No 307
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=58.29 E-value=4.3e+02 Score=32.41 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
...-+.|=.+|..+...|+.++..|-.-++.-+-++.+|
T Consensus 237 ~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 237 SQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778999999999999988766666665555553
No 308
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=58.20 E-value=59 Score=33.56 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAK 167 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k 167 (679)
+.+...+..+|..-++|...|+.+|.--+.|+. |..-|.+...+
T Consensus 111 eAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~e 155 (192)
T PF11180_consen 111 EAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQE 155 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667888899999999999998888877776 66666555443
No 309
>PRK11281 hypothetical protein; Provisional
Probab=58.17 E-value=3.3e+02 Score=34.89 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=11.0
Q ss_pred HHHHHhhhHHHhhhHHHHHHHH
Q 005743 174 IVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 174 Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
|.+.+..++.+-+..|++++++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 310
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=58.15 E-value=84 Score=30.85 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=53.3
Q ss_pred HHHHHHHHHH-hHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEA-KKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235 (679)
Q Consensus 157 I~ELqrqL~~-k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~ 235 (679)
|+||-++|.= ...||.-|||+--+|... =-|..++++. .-...++|..-..|..+|.-|+..|.+++.
T Consensus 34 VReLNr~LrG~~reEVvrlKQrRRTLKNR------GYA~sCR~KR-----v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 34 VRELNRHLRGLSREEVVRLKQRRRTLKNR------GYAQSCRVKR-----VQQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhh------hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776663 446888888888777543 1122223332 001123444446677888888888888888
Q ss_pred HHHhhhhhhhhhHHHh
Q 005743 236 EKRNLACKFSSMENQL 251 (679)
Q Consensus 236 EKreL~~KL~sAe~~~ 251 (679)
|...+..|++++..-+
T Consensus 103 E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 103 ELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888888888876543
No 311
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.59 E-value=2e+02 Score=28.30 Aligned_cols=32 Identities=25% Similarity=0.137 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
|..-..+|+.+|-....|+..-.+++.+|...
T Consensus 1 m~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~k 32 (177)
T PF13870_consen 1 MRQKRNEISKLRLKNITLKHQLAKLEEQLRQK 32 (177)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999988888888776
No 312
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.47 E-value=2.9e+02 Score=34.42 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELS 149 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELl 149 (679)
..+|..|--.+.+|++.+..|+.|-.
T Consensus 663 K~lI~~lD~~~e~lkQ~~~~l~~e~e 688 (970)
T KOG0946|consen 663 KGLIRELDYQIENLKQMEKELQVENE 688 (970)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444455555444444333
No 313
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=57.36 E-value=9.8 Score=31.10 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHH
Q 005743 213 SSSSQNLEMEVVELRRLNKELQ 234 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ 234 (679)
.-++-+||.||.-||+.|++|=
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHH
Confidence 3678999999999999999984
No 314
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.23 E-value=34 Score=36.30 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 222 EVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 222 EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
--.|+|-...++|.||-+|...|.--|+.+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554433
No 315
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.04 E-value=80 Score=34.49 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
++-|.+||..+++.+.|-..=+.|+.++
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eL 94 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDEL 94 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6778888777666554433333333333
No 316
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=56.88 E-value=11 Score=42.69 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=12.9
Q ss_pred hhhhhHHHhhhhhcc--chhHHHHHHHHHHHHh
Q 005743 243 KFSSMENQLTSLAKA--SESDIISKIKAEALVL 273 (679)
Q Consensus 243 KL~sAe~~~~~~~~~--~Es~~Va~~~eE~~~L 273 (679)
+|-..|.+++-++.. ...++|| +.|+..|
T Consensus 84 ~L~~mEs~vn~isq~V~ihkekvA--rreIg~l 114 (483)
T KOG2546|consen 84 QLRYMESQVNHISQTVDIHKEKVA--RREIGNL 114 (483)
T ss_pred HHHHHHhhhhhhhhhheecchhhh--hhhccce
Confidence 344445555544432 2223443 5555544
No 317
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=56.76 E-value=2.7e+02 Score=29.62 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHhhhhhchHHHHHH
Q 005743 277 NEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 277 Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
|.++...++.|+.+|..|+-..+.
T Consensus 197 ~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 197 NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998873
No 318
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.75 E-value=95 Score=31.71 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
.+.++.++..+.++...+..+|..|+.....|+.+.+...
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666654443
No 319
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.66 E-value=52 Score=32.67 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE 184 (679)
|.+|+.+|..+..+++.|+.+++.|+.|
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555555543
No 320
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=56.54 E-value=3.6 Score=43.44 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=3.1
Q ss_pred HhhcCCCc
Q 005743 361 KFKKWPIA 368 (679)
Q Consensus 361 KLKkW~~~ 368 (679)
..++|-.|
T Consensus 65 ~~~~WkvG 72 (264)
T PF06003_consen 65 PNKKWKVG 72 (264)
T ss_dssp TTT---TT
T ss_pred cccCCCCC
Confidence 35789777
No 321
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=56.42 E-value=2e+02 Score=34.67 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
..+..|...+.++.+.+.+.....+.+...|..++..+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 255 AELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666655555555555555555443
No 322
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.39 E-value=1.4e+02 Score=27.46 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
-.++..|+..++.+......|+.++.|.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777776666
No 323
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.35 E-value=40 Score=38.87 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
-.+++|+.++.+|.+.|+.|..||..|..|.++...+|..
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5577788888888888888888888888777777766643
No 324
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.24 E-value=1.7e+02 Score=35.27 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=60.9
Q ss_pred hHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhh-hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 167 KKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (679)
Q Consensus 167 k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q---~ee~~k~d-~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~ 242 (679)
.+..-..|.+.|+..|+|-..|...+-+......+ .+-.++.. .-+...+..|-..-.|=++.-+++++|-..|..
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677777777766666665544433331 00000000 001233334444444444445555555555555
Q ss_pred hhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743 243 KFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 243 KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
.|.-- ...+...+..++++- .++.+ .|..+|..|++.+..-++++..
T Consensus 139 ~l~g~-~~~~~~~~~D~~dls---l~kLe-------elr~~L~~L~~ek~~Rlekv~~ 185 (660)
T KOG4302|consen 139 ELGGP-EDLPSFLIADESDLS---LEKLE-------ELREHLNELQKEKSDRLEKVLE 185 (660)
T ss_pred HhcCC-ccCCcccccCccccc---HHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 111222233444433 24555 6677888888888888777763
No 325
>PF14282 FlxA: FlxA-like protein
Probab=55.79 E-value=73 Score=29.40 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQA 146 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ 146 (679)
+....|..|+..|..|++.-..|..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3477777777777777666555543
No 326
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=55.57 E-value=2.2e+02 Score=29.98 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRR 228 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR 228 (679)
+.+..||..+..++.
T Consensus 60 ~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 60 QDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 327
>PF15294 Leu_zip: Leucine zipper
Probab=55.55 E-value=3.1e+02 Score=29.94 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
+..|+..|.-|++||++|++.+.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~ 149 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLK 149 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666665554
No 328
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=55.53 E-value=1.9e+02 Score=32.56 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~ 199 (679)
+..-|.--|.-+.+||++||-++.++....
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555555556666666666665555444
No 329
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=55.50 E-value=23 Score=36.70 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=3.3
Q ss_pred hhhccCCCC
Q 005743 464 VEKRVLRVP 472 (679)
Q Consensus 464 iekr~~rvp 472 (679)
|.+-+...+
T Consensus 135 Vkk~p~~~s 143 (205)
T PF12238_consen 135 VKKKPAQPS 143 (205)
T ss_pred hhhcccCCC
Confidence 333333333
No 330
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=54.67 E-value=2.8e+02 Score=31.22 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHH-h---hhhhhhhcc-chhhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK-N---DNKNAINMG-SSSSQNLEMEVVELRRLNK 231 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~-e---e~~k~d~e~-e~~l~~LE~EV~ELRR~Nk 231 (679)
|..|..+......++..+......-..+-..++.++.+......++ . .....+..+ ++..+.|+.++..|+....
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667666666656666666666666666666666666555444421 1 111222222 4666777777777766554
Q ss_pred ---HHHHHHHhhhhhhhhhHHHhhhhhc
Q 005743 232 ---ELQMEKRNLACKFSSMENQLTSLAK 256 (679)
Q Consensus 232 ---eLQ~EKreL~~KL~sAe~~~~~~~~ 256 (679)
.+|-+-++|.+.+++++.-+..+..
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~lL~ 394 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETLLQ 394 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888776655444
No 331
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=54.47 E-value=24 Score=39.69 Aligned_cols=14 Identities=0% Similarity=0.048 Sum_probs=6.9
Q ss_pred hhhcccHHHHHHHH
Q 005743 595 NAVYQNIEDVVAFV 608 (679)
Q Consensus 595 ~~~~~dmedv~~Fv 608 (679)
.|--.||..+.+|.
T Consensus 256 TFNEvDMS~lm~mR 269 (457)
T KOG0559|consen 256 TFNEVDMSNLMEMR 269 (457)
T ss_pred hhhhhhHHHHHHHH
Confidence 33344555555553
No 332
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.16 E-value=1.6e+02 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
.++..|+..++.+......|+.++.|+
T Consensus 14 ~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 14 AQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677777777777665
No 333
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=52.96 E-value=55 Score=31.90 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=13.8
Q ss_pred CCccccchhHHHHHHHhh
Q 005743 518 TGVVQRAPQVVEFYHSLM 535 (679)
Q Consensus 518 ~~kv~RaP~vvefY~SL~ 535 (679)
.-.+..-|....||.-|+
T Consensus 107 ~~~~~~dP~y~kYfKMl~ 124 (148)
T PF10152_consen 107 GVTVKDDPRYAKYFKMLK 124 (148)
T ss_pred cccccCCccHHHHHHHHH
Confidence 355667799999998887
No 334
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.92 E-value=2.4e+02 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
++|..+..+..+|+....+++.++..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ 31 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQ 31 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555443
No 335
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.81 E-value=2.5e+02 Score=34.76 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHhHHHHHH-------HHHhhhHHHhhhHHHHHH
Q 005743 157 VLELERELEAKKIENDEIV-------RRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk-------~kI~sLEaE~~rLq~qv~ 193 (679)
-+-||+||+.-...++.|. +.|+++..||++|...+.
T Consensus 436 N~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 436 NMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776665555544 344555555555554443
No 336
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.75 E-value=6.1e+02 Score=32.49 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=21.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
++...+..+..|+....-+-++|..+..++..+++.+.
T Consensus 332 ~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~ 369 (1200)
T KOG0964|consen 332 KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE 369 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 33444444445666666666666666666666665543
No 337
>PRK11519 tyrosine kinase; Provisional
Probab=52.32 E-value=2.8e+02 Score=33.33 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
..+++|+.++..++.+-+..+..+.++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555555555555444
No 338
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=52.25 E-value=30 Score=28.32 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~ 199 (679)
|..|+++|+.||.+-+.||.-+..|-++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999887664
No 339
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=52.13 E-value=3.3e+02 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQA 146 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ 146 (679)
+...|+..||..+--|+-....-+.
T Consensus 170 ~~~een~~lr~k~~llk~Et~~~~~ 194 (596)
T KOG4360|consen 170 PLEEENTQLRSKAMLLKTETLTYEE 194 (596)
T ss_pred ChHHHHHHHHHHHHHHHhhhcchhH
Confidence 4466667776666655555444443
No 340
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=52.03 E-value=2.1e+02 Score=26.97 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
.++..|+..+..|....+.|+.+-..+..+++..+..+.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666665554443
No 341
>PRK11020 hypothetical protein; Provisional
Probab=51.76 E-value=46 Score=31.90 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhch
Q 005743 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNE 294 (679)
Q Consensus 236 EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~d 294 (679)
|...|.-|||.-..++++.....+.++|++...|.+ .|.++|..+..-+..+
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~-------~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKA-------TLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334445555555555555556678899999999998 7788888877665443
No 342
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=51.65 E-value=4.2e+02 Score=31.00 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
.+.|+..|..|..+-.+++.++..+
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~ 33 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSM 33 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666665
No 343
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=51.43 E-value=3.2e+02 Score=28.87 Aligned_cols=28 Identities=7% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 005743 279 DLSKQVEGLQMSRLNEVEELAYLRWVNSC 307 (679)
Q Consensus 279 ~L~~QlE~l~~~Re~dvEELvylRwiNac 307 (679)
-...+|..|+..|..||.--+. .|+...
T Consensus 188 ~ik~El~rFe~er~~Dfk~~v~-~fles~ 215 (234)
T cd07665 188 TVRKEVIRFEKEKSKDFKNHII-KYLETL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4566778889999999888775 555543
No 344
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.43 E-value=25 Score=38.97 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=34.5
Q ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 207 NAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 207 k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.+-.+++.++.+||..+.++......++.+...|..+|+..|..+
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334566788888888888888888888888888877777776544
No 345
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=51.21 E-value=1.1e+02 Score=33.95 Aligned_cols=99 Identities=22% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------Hhhhh----------------------
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNK---------------------- 206 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--------~ee~~---------------------- 206 (679)
+...+.+......++|.+..++..|.=|..-|+.++..|..-... .+|..
T Consensus 14 ~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml 93 (355)
T PF09766_consen 14 IKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLML 93 (355)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHH
Confidence 444555566667789999999999999999999888866533331 11111
Q ss_pred -hhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhc
Q 005743 207 -NAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAK 256 (679)
Q Consensus 207 -k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~ 256 (679)
.-+.|+++ =+.|+.+..||....+.|+.++.....+|++...++..+..
T Consensus 94 ~RL~~EL~~-Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 94 ARLEFELEQ-RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00112222 24566666667777777777777777777766666655433
No 346
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.20 E-value=4.7e+02 Score=30.69 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=51.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH---------------------hhhhhccchhHHHHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ---------------------LTSLAKASESDIISKIKAEALV 272 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~---------------------~~~~~~~~Es~~Va~~~eE~~~ 272 (679)
.-+++.+.++.-+---.++||.|+.-+.-+|+-.=+- ++++-. .=++++. .-.+...
T Consensus 396 gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~-nc~ei~E-~i~~tg~ 473 (521)
T KOG1937|consen 396 GNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHL-NCMEILE-MIRETGA 473 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHH-HHHHcch
Confidence 4455666666666666666776666665555432211 111100 1223443 2345555
Q ss_pred hhhcChHHHHHHHH-HhhhhhchHHHHH--HH--HHHHHHHHHhh
Q 005743 273 LRHTNEDLSKQVEG-LQMSRLNEVEELA--YL--RWVNSCLRDEL 312 (679)
Q Consensus 273 LR~~Ne~L~~QlE~-l~~~Re~dvEELv--yl--RwiNacLR~EL 312 (679)
++.+-.+|..||.+ ..+.+..-+|.|. |. |=.|+.|..++
T Consensus 474 ~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 474 LKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666788888776 4556666666665 32 44555554444
No 347
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=51.11 E-value=21 Score=40.34 Aligned_cols=6 Identities=17% Similarity=0.706 Sum_probs=2.5
Q ss_pred hhhhhc
Q 005743 385 TWVQLE 390 (679)
Q Consensus 385 ~~~~~~ 390 (679)
.||..-
T Consensus 9 ~W~p~g 14 (409)
T KOG4590|consen 9 GWLPAG 14 (409)
T ss_pred cccccc
Confidence 344433
No 348
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.98 E-value=57 Score=31.32 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHH
Q 005743 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEK 237 (679)
Q Consensus 158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EK 237 (679)
.+|.++++....++..+...+..+..+...|+..-.+ ...+-+++..+-.++..++=.|-.-+.-||....-|+-+-
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~---~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eE 109 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLE---TSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEE 109 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3566666666666666666666666665555332111 1111122222223333444444444445555555555555
Q ss_pred HhhhhhhhhhHHHh
Q 005743 238 RNLACKFSSMENQL 251 (679)
Q Consensus 238 reL~~KL~sAe~~~ 251 (679)
.+|..+|+..+.++
T Consensus 110 e~L~~~le~l~~~l 123 (141)
T PF13874_consen 110 EELRKRLEALEAQL 123 (141)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666555544
No 349
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=50.97 E-value=17 Score=40.52 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.8
Q ss_pred HHhhhcc
Q 005743 562 IGEIENR 568 (679)
Q Consensus 562 igEi~nR 568 (679)
..+|-+|
T Consensus 362 FEdiM~R 368 (498)
T KOG4849|consen 362 FEDIMTR 368 (498)
T ss_pred HHHHHhh
Confidence 3444333
No 350
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.85 E-value=2.7e+02 Score=31.39 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 005743 216 SQNLEMEVVELRRLNK 231 (679)
Q Consensus 216 l~~LE~EV~ELRR~Nk 231 (679)
+..++.++.+++....
T Consensus 245 i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 245 IDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333334433333333
No 351
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.61 E-value=5.6e+02 Score=31.43 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhhhhhHH--HHHhhc-CCCccchhH
Q 005743 603 DVVAFVKWLDDELGFLVDER--AVLKHF-DWPEKKADT 637 (679)
Q Consensus 603 dv~~Fv~wlD~eLs~LsDEr--aVLk~F-~wPEkK~da 637 (679)
.+..|.+.|-.-|++.+|=. ...+.+ +|-+++-+.
T Consensus 626 ki~eFr~ac~sL~Gykid~~~~s~~ritS~ya~~~~~~ 663 (716)
T KOG4593|consen 626 KIQEFRDACYSLLGYKIDFTLESRYRLTSGYAEEPDDC 663 (716)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeeeeccCCCchh
Confidence 56678888888888877621 222222 565555444
No 352
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.21 E-value=1.5e+02 Score=30.72 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+.++.-+-..-..++..|+.++..|+..++.|+.++..
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~ 81 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVAS 81 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555555555555555555555543
No 353
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.99 E-value=1.2e+02 Score=34.74 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
+..+..+|+....+|..+.++|..+|+.++.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 354
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=49.74 E-value=1.7e+02 Score=29.24 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
+...|..+|..|+++++.|+..+..+
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45567777888888888877655443
No 355
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=49.64 E-value=24 Score=42.75 Aligned_cols=11 Identities=18% Similarity=-0.266 Sum_probs=5.0
Q ss_pred CCCcchhhccc
Q 005743 403 GSNCRAEELMP 413 (679)
Q Consensus 403 ~~~~~~e~~~~ 413 (679)
.+++|.-=.|.
T Consensus 455 ~~R~cAfI~M~ 465 (894)
T KOG0132|consen 455 PPRGCAFIKMV 465 (894)
T ss_pred cCCceeEEEEe
Confidence 34455443444
No 356
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=49.59 E-value=5.5 Score=45.86 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQE 136 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~e 136 (679)
.|++||..|+..+..
T Consensus 373 ~YEqEI~~LkErL~~ 387 (495)
T PF12004_consen 373 KYEQEIQSLKERLRM 387 (495)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHHHHHH
Confidence 378888888866644
No 357
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.16 E-value=2.5e+02 Score=28.52 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHH
Q 005743 259 ESDIISKIKAEAL 271 (679)
Q Consensus 259 Es~~Va~~~eE~~ 271 (679)
..+.+.+++++..
T Consensus 133 Dp~~i~~~~~~~~ 145 (188)
T PF03962_consen 133 DPEKIEKLKEEIK 145 (188)
T ss_pred CHHHHHHHHHHHH
Confidence 3344555555555
No 358
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=48.93 E-value=1.6e+02 Score=29.16 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---hh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRN---PK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ---E~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq 189 (679)
...+|+.++..|..|.+++..|+.++.+.+++ +. +.+.+.++...--+.+.|..-....+++...+.
T Consensus 65 ~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~~e~~~~~ 136 (152)
T PF07321_consen 65 SLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQAEARQQR 136 (152)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998888222 22 666666666655566666555555555444433
No 359
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=48.66 E-value=1.1e+02 Score=27.43 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHh
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEK 185 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~ 185 (679)
.++|.+.|..+..||+.|+.-|++|+.+-
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998888763
No 360
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.52 E-value=1.8e+02 Score=26.09 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=24.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
.+.+-|..++..|++....|+.+|..|..+++
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567778888888888888888888877664
No 361
>PF13166 AAA_13: AAA domain
Probab=48.51 E-value=5.2e+02 Score=30.44 Aligned_cols=6 Identities=33% Similarity=0.877 Sum_probs=2.9
Q ss_pred HHHHhh
Q 005743 358 FIKKFK 363 (679)
Q Consensus 358 li~KLK 363 (679)
||..|+
T Consensus 514 Fla~l~ 519 (712)
T PF13166_consen 514 FLAELK 519 (712)
T ss_pred HHHHHh
Confidence 444554
No 362
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.43 E-value=7.1e+02 Score=32.13 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 164 LEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 164 L~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
..+-..+.+.++.++..+|.+-+.||+.+.+..
T Consensus 203 ~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 203 QELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777777777777766544
No 363
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.28 E-value=24 Score=32.96 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 265 KIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
.+-+|-..||.+|+.|-..|..+..
T Consensus 33 ~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 33 ELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666666666555555543
No 364
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.26 E-value=99 Score=34.82 Aligned_cols=75 Identities=28% Similarity=0.314 Sum_probs=54.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---chh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKR---NPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKE---QE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
..+..++..|+..++.++++-.+|+..|..++. +.. -.+...+++.-......|..++..|+++...|++++...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667889999999999999999899888777722 112 344455555555666777777888888877777777665
No 365
>PRK14141 heat shock protein GrpE; Provisional
Probab=48.18 E-value=2.4e+02 Score=29.40 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhH-----hHHHHHHH
Q 005743 104 QVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKK-----IENDEIVR 176 (679)
Q Consensus 104 ~~~~~~~~~~r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~-----~Ei~~Lk~ 176 (679)
|++-+.+ .+...+..+..+|+.|+..+.+|+++-.++.+++.-| |.-+. +.++...-..+. -=+|-|.+
T Consensus 21 ~~~~~~~----~~~~~~~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLer 96 (209)
T PRK14141 21 PVDREAK----PYEMEDDPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRR 96 (209)
T ss_pred ccccccc----cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 4444444 3444557789999999999999999999999999999 22222 222222111111 24556666
Q ss_pred HHhhhHHH-----hhhHHHHHHHHHHHHHH
Q 005743 177 RVGMLEDE-----KTSLSEQLAALSVILER 201 (679)
Q Consensus 177 kI~sLEaE-----~~rLq~qv~e~~~~~~Q 201 (679)
=+...... ...+...+.....+..|
T Consensus 97 Al~~~~~~~~~~~~~~~~~l~eGv~mi~k~ 126 (209)
T PRK14141 97 ALDAIPAEARAAADAGLKALIEGVEMTERA 126 (209)
T ss_pred HHhccccccccccchhHHHHHHHHHHHHHH
Confidence 55544322 23355555555555554
No 366
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.98 E-value=24 Score=43.67 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=7.5
Q ss_pred CcchhHHHHhhcC
Q 005743 353 GRRLSFIKKFKKW 365 (679)
Q Consensus 353 sKk~~li~KLKkW 365 (679)
-||..|++.++.=
T Consensus 839 ~kk~~l~eev~~~ 851 (1080)
T KOG0566|consen 839 QKKLRLFEEVKER 851 (1080)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 367
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=47.58 E-value=88 Score=32.94 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh--HH-HHHHHHHHhHh--HHHHHHHHHhhhHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPK--VL-ELERELEAKKI--ENDEIVRRVGMLED 183 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~--I~-ELqrqL~~k~~--Ei~~Lk~kI~sLEa 183 (679)
+.|-.+++..|..|+.....|+.++.+. +.+|+ ++ +=.+++..+.. +|.+|+..-..|.+
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKa 249 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKA 249 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888 66666 43 33444444442 66666554444433
No 368
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=47.57 E-value=6.9e+02 Score=31.61 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhchh--HHHHHHHHHHhHhHHHHHHHHHh
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQA--ELSEWKRNPK--VLELERELEAKKIENDEIVRRVG 179 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~--ELlEyKEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~ 179 (679)
+-..++|..|+....++++-+.+... .|++-++.+. ..+|+..|......++++.--|.
T Consensus 181 P~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~ 243 (984)
T COG4717 181 PQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAVE 243 (984)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888888777777777666653 3444433333 77888888887777777766554
No 369
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=47.21 E-value=1.4e+02 Score=30.65 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN 205 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~ 205 (679)
-...|...+..|+.+...+..++-+....++..|..
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~ 172 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE 172 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888888888887777765544
No 370
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.96 E-value=3.3e+02 Score=27.73 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
.....++.++.-+|.....|....+-...|+..++..+..+ |. -+..++.++. .-.+...++|..|+..|-.
T Consensus 115 ~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~----e~-~~~~a~~~~e---~is~~~k~El~rF~~~r~~ 186 (216)
T cd07627 115 QYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEA----ER-RASELKKEFE---EVSELIKSELERFERERVE 186 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH----HH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444322111123444444443321 11 1223344444 2244667788888888888
Q ss_pred hHHHHHHHHHHHHH
Q 005743 294 EVEELAYLRWVNSC 307 (679)
Q Consensus 294 dvEELvylRwiNac 307 (679)
||-..+. .|++..
T Consensus 187 dfk~~l~-~~~e~~ 199 (216)
T cd07627 187 DFRNSVE-IYLESA 199 (216)
T ss_pred HHHHHHH-HHHHHH
Confidence 8877775 555533
No 371
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.92 E-value=5.1e+02 Score=29.93 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=11.5
Q ss_pred HHHHhhhhhchHHHHH
Q 005743 284 VEGLQMSRLNEVEELA 299 (679)
Q Consensus 284 lE~l~~~Re~dvEELv 299 (679)
+|.-+..-+-++++|-
T Consensus 264 lEt~q~~leqeva~le 279 (499)
T COG4372 264 LETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777777777776
No 372
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.88 E-value=3.6e+02 Score=32.43 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
.-+.+|..++..|+.+-...+.++.++.
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665555544
No 373
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.86 E-value=2.7e+02 Score=29.67 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHH
Q 005743 261 DIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297 (679)
Q Consensus 261 ~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEE 297 (679)
++-.++..|+..+|..|+..+.++++..++-..-+-.
T Consensus 113 e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~ 149 (230)
T PF03904_consen 113 ELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKS 149 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788899999999999999988876665544433
No 374
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=46.72 E-value=1.1e+02 Score=35.78 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
++.|+.+|+.+++..+|+-.++..|+-+|++.-. ...|.--|+-...+|+++-+.-..+|++-+.|+.++
T Consensus 26 ~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i 100 (604)
T KOG3564|consen 26 NEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQI 100 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4899999999999999999999999999954422 223333333333455554444444444444444443
No 375
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=46.54 E-value=8.2e+02 Score=32.16 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=14.2
Q ss_pred hhhcccccCCCCCccccCCCCCCCCC
Q 005743 12 KTLKFADQNQPPKSQNTKTNSSINPS 37 (679)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (679)
-.+|||-+.+-|. |+++++-+-.+
T Consensus 45 EcLKyatTG~lPp--nsk~~~FiHdp 68 (1294)
T KOG0962|consen 45 ECLKYATTGELPP--NSKGGSFIHDP 68 (1294)
T ss_pred HHHHHHhcCcCCC--CCcCCCCCCCc
Confidence 4578888777665 45554444433
No 376
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=46.51 E-value=3.7e+02 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 005743 279 DLSKQVEGLQMSRLNEVEELAYLRWVNSC 307 (679)
Q Consensus 279 ~L~~QlE~l~~~Re~dvEELvylRwiNac 307 (679)
...++|+.|+..|-.||-..+. .|+...
T Consensus 188 ~~k~El~rFe~er~~dfk~~l~-~fles~ 215 (234)
T cd07664 188 TIRKEVGRFEKERVKDFKTVII-KYLESL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4556777788888888877775 555543
No 377
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.45 E-value=4.5e+02 Score=30.02 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRN 154 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ 154 (679)
.......+..+...|.++++.-..|+..+..+|++
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888898888888888877766554
No 378
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=46.16 E-value=33 Score=39.09 Aligned_cols=9 Identities=11% Similarity=-0.278 Sum_probs=4.2
Q ss_pred hhcccCCCC
Q 005743 435 LSSQKYDFD 443 (679)
Q Consensus 435 ~~~~ky~~~ 443 (679)
..++++++-
T Consensus 268 ~~v~~~~~~ 276 (487)
T KOG4672|consen 268 TSVPLLPPP 276 (487)
T ss_pred ccccccCCC
Confidence 344555543
No 379
>PRK12704 phosphodiesterase; Provisional
Probab=46.14 E-value=5.5e+02 Score=30.08 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=31.2
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH
Q 005743 210 NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD 261 (679)
Q Consensus 210 ~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~ 261 (679)
..++++-++|+..-.+|.+..++|+..+.++..........+..++.+|..+
T Consensus 103 e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~e 154 (520)
T PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE 154 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3344555555555555666666666666666666666666666666766554
No 380
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.61 E-value=1.3e+02 Score=31.61 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHH
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~ 286 (679)
||.|...+..-..-|+.|-+....+|+.|+.+...+-+-.| .+..||++|-..|..|.+|++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e-----~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE-----GLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHHHhc
Confidence 55555555555666666666666666666655555444222 3456677666666677777763
No 381
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.92 E-value=30 Score=38.86 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 005743 129 SLRSLLQESK 138 (679)
Q Consensus 129 ~Lr~~V~eLq 138 (679)
.+|.+|..||
T Consensus 173 d~rslvig~q 182 (488)
T KOG3895|consen 173 DYRSLVIGLQ 182 (488)
T ss_pred chHHHHHHHH
Confidence 4455554443
No 382
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.78 E-value=3.1e+02 Score=32.37 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
+++.+|=.+.....-.+..+..|-+.|..||+.+|..-
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek 457 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEK 457 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777888888888888887544
No 383
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=44.53 E-value=3.1e+02 Score=33.30 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=34.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhc
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAK 256 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~ 256 (679)
|..-=+|-.||-||+-..-.|+.|++|--.||-.+|..+-.+..
T Consensus 173 ETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~ 216 (861)
T KOG1899|consen 173 ETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQ 216 (861)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 33334688899999999999999999988998888877766543
No 384
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.17 E-value=1e+02 Score=27.02 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNL 240 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL 240 (679)
..+.-|..|+.+|+..|..|..++..|
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345556666666666655555444443
No 385
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.11 E-value=88 Score=29.31 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
|.+|+.+|..-..++..|+..|..|-+||.+|+-+...+.....+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888899999999999999998888777766655554
No 386
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.08 E-value=5.9e+02 Score=29.83 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH----HHHHHHHHHHHhhhhhcccc
Q 005743 262 IISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA----YLRWVNSCLRDELQNSCSTT 319 (679)
Q Consensus 262 ~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv----ylRwiNacLR~EL~d~~sa~ 319 (679)
++.=+++.+. +..++|+.....+..+...|. .|.=.|..+..|-.+.+.|+
T Consensus 141 ll~Pl~e~l~-------~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 141 LLSPLREQLD-------GFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555565 566677766655544444443 44446666666766665554
No 387
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=44.01 E-value=2.6e+02 Score=27.70 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=32.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
+..+.-|...+.+|-+....|+....+|+.+...-+..+..
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888888888888888888877765543
No 388
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=43.80 E-value=51 Score=38.01 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=43.6
Q ss_pred hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 152 KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 152 KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
|.+|.|.-|+.++.+=++|-..|.++|..|+.+|..|.+|+..+..++.|
T Consensus 269 kKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 269 KKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred hHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 66777888999999999999999999999999999999999888777663
No 389
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.67 E-value=2.2e+02 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
.+++..+-+||+-.+..|+.|..++...|..|+.
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555543
No 390
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.28 E-value=2e+02 Score=30.90 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=21.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL 244 (679)
+-+.+.+||.|+.|++...++|.-||.-|-.++
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777777777777777777766544433
No 391
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.86 E-value=2e+02 Score=25.86 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEWKRN-PKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ-E~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.+-..|...+..|+.+...+..++...+.+ +.+.+| ..++..++.+|..|+++...+++++.+.
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l-------~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEEL-------KAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666666666666222 123333 2355566666666666666666666544
No 392
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.81 E-value=1.7e+02 Score=33.43 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAEL 148 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~EL 148 (679)
...+|..|+..|+.|+.+-..++.++
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~ 94 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRG 94 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666555555544443
No 393
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.79 E-value=4.8e+02 Score=28.47 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
+-+.-|+.|.....+|...-.+++.++..+
T Consensus 19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~ 48 (309)
T PF09728_consen 19 SPEEKLEALCKKYAELLEEMKRLQKQLKKL 48 (309)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666666665555
No 394
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.27 E-value=2.4e+02 Score=24.74 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=46.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH------------HhhhhhhhhccchhhhhHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER------------KNDNKNAINMGSSSSQNLEMEVVEL 226 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q------------~ee~~k~d~e~e~~l~~LE~EV~EL 226 (679)
++++++..-..++..+..+|..|+.+.++++.-+.++..+-.. +........+++..+..++.++..|
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555444444443333221 0000111133457777777777777
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 005743 227 RRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 227 RR~NkeLQ~EKreL~~KL~s 246 (679)
+...+.|+.+-.++...|..
T Consensus 82 ~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666643
No 395
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=41.69 E-value=1.1e+02 Score=25.78 Aligned_cols=65 Identities=26% Similarity=0.329 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 218 ~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
+++.|+.-|.+....|+.+..-+..||+.-. .+.+.++. +|.+-++....+...-+.|..+|+.|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~----F~~kAP~e-Vve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNEN----FVEKAPEE-VVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT----HHHHS-CC-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----ccccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888888777777642 34454443 66666666664444444444444443
No 396
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=41.50 E-value=5.2e+02 Score=28.41 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743 227 RRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 227 RR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
=....-||.||.||...+. +.+|+.|. +|-.|- +.-...||+.-+.|.+.++.|.++=+...+-++.
T Consensus 216 MAKCR~L~qENeElG~q~s--~Gria~Le--~eLAmQ---Ks~seElkssq~eL~dfm~eLdedVEgmqsTili 282 (330)
T KOG2991|consen 216 MAKCRTLQQENEELGHQAS--EGRIAELE--IELAMQ---KSQSEELKSSQEELYDFMEELDEDVEGMQSTILI 282 (330)
T ss_pred HHHHHHHHHHHHHHHhhhh--cccHHHHH--HHHHHH---HhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHH
Confidence 3456667888888877654 34444431 122121 3334456777777777777777666655555443
No 397
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.49 E-value=6.4e+02 Score=29.53 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhcChHHHHHHH----HHhhh--hhchHHHHHHHHHHH
Q 005743 265 KIKAEALVLRHTNEDLSKQVE----GLQMS--RLNEVEELAYLRWVN 305 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE----~l~~~--Re~dvEELvylRwiN 305 (679)
.+.+++..|...|..+..+-. .|..+ --....|++-.|-+.
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE 215 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLE 215 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHH
Confidence 344555555555544444322 22222 135566666434443
No 398
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.04 E-value=1.2e+02 Score=26.47 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.+..|..|=.-||.....++.|.+.|..|.+.|..++
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555444
No 399
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.02 E-value=3.2e+02 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 218 ~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.++.-+..|.+..+.|......|...|...+.++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555444443
No 400
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=40.86 E-value=16 Score=41.98 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.4
Q ss_pred CcHHHHHHHHH
Q 005743 664 VPCDLALKKMV 674 (679)
Q Consensus 664 ~pc~~aL~km~ 674 (679)
-||+..--=|+
T Consensus 202 Y~~GeEtaLi~ 212 (461)
T PLN03132 202 YICGEETALLE 212 (461)
T ss_pred CcCCHHHHHHH
Confidence 34444433333
No 401
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=40.74 E-value=1.1e+02 Score=34.03 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
+.-+..|+..|.+|-..-.|||+||+..
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q~ 247 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQI 247 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999876
No 402
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.27 E-value=7.7e+02 Score=30.10 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=54.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChH----HHHHHHHHhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNED----LSKQVEGLQM 289 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~----L~~QlE~l~~ 289 (679)
..++.|..+..+.......|..+-.+|=-+|+...-....+-.+||+++.. -+.-+-+ +..+|..|+.
T Consensus 233 ~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~--------~~~ls~d~I~~ve~Ev~Rl~q 304 (660)
T KOG4302|consen 233 KMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATE--------PNSLSLDIIEQVEKEVDRLEQ 304 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhc--------cccccHHHHHHHHHHHHHHHH
Confidence 567777777777777778888888888888887776666665555544332 1111222 2345555666
Q ss_pred hhhchHHHHHHHHHHH
Q 005743 290 SRLNEVEELAYLRWVN 305 (679)
Q Consensus 290 ~Re~dvEELvylRwiN 305 (679)
-|..-+-|||.-+|..
T Consensus 305 lK~s~mKeli~k~r~E 320 (660)
T KOG4302|consen 305 LKASNMKELIEKKRSE 320 (660)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 6666788999766654
No 403
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.25 E-value=1.2e+02 Score=36.37 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743 135 QESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLE 182 (679)
Q Consensus 135 ~eLqERE~kLE~ELlEy-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLE 182 (679)
.+|+.++++|+.++.+| .. |.||++.|..+.-|+..|+-.|+.-|
T Consensus 96 ~ele~krqel~seI~~~n~k---iEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTK---IEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 45666666666666665 21 44555555555555555555554433
No 404
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.15 E-value=65 Score=29.82 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
...++..++.+++..|.+|+.++..|..+++.-+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777777777766665543
No 405
>PRK01203 prefoldin subunit alpha; Provisional
Probab=39.94 E-value=1.9e+02 Score=28.18 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH
Q 005743 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (679)
Q Consensus 158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q 191 (679)
+++..||+.-..|++.|.+++..|+.-..++.+-
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ 36 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQT 36 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777788888888888888888888663
No 406
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.58 E-value=38 Score=31.96 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=24.1
Q ss_pred HHhhhhhhhhhHHHhhhhhccch--hHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 237 KRNLACKFSSMENQLTSLAKASE--SDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 237 KreL~~KL~sAe~~~~~~~~~~E--s~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
|++|..++...|.++..+....+ -..|..+-+|-..||.+|+.|-..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555444433222100 0123344566666666666666666554
No 407
>PRK14151 heat shock protein GrpE; Provisional
Probab=39.57 E-value=2.7e+02 Score=28.14 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=51.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhH-----hHHHHHHHHHhhhHHHhhhHHH
Q 005743 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKK-----IENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 118 ~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~-----~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
....++..+|+.|+..+.+|+++-.++..++.-| |.-+. +.++...-..+. -=+|-|.+-+.....+...+..
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~ 99 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKP 99 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHH
Confidence 3445678899999999999999999999999999 22222 222222211111 2456666666554444444555
Q ss_pred HHHHHHHHHHH
Q 005743 191 QLAALSVILER 201 (679)
Q Consensus 191 qv~e~~~~~~Q 201 (679)
.+..+..+.++
T Consensus 100 ~~~Gv~mi~k~ 110 (176)
T PRK14151 100 MREGVELTLKM 110 (176)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 408
>PHA03346 US22 family homolog; Provisional
Probab=39.07 E-value=17 Score=42.25 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=2.4
Q ss_pred CCCCCC
Q 005743 492 AQIPQP 497 (679)
Q Consensus 492 ~gvpPp 497 (679)
+|-+||
T Consensus 409 ~~~~~~ 414 (520)
T PHA03346 409 GGLAPP 414 (520)
T ss_pred cCcCCC
Confidence 333443
No 409
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.02 E-value=45 Score=39.56 Aligned_cols=8 Identities=25% Similarity=0.073 Sum_probs=3.7
Q ss_pred cchhhccc
Q 005743 406 CRAEELMP 413 (679)
Q Consensus 406 ~~~e~~~~ 413 (679)
-.+|-+++
T Consensus 361 l~lEllLl 368 (620)
T PRK14954 361 FRFELALL 368 (620)
T ss_pred HHHHHHHH
Confidence 34554444
No 410
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=38.97 E-value=40 Score=31.26 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-hhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 223 VVELRRLNKELQMEKRNLACKF-SSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 223 V~ELRR~NkeLQ~EKreL~~KL-~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
..++-.....++.|..+|+..| +.| +.||+.++.+-..+...|..|.+|+.....
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEA------------N~MVa~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEA------------NKMVADARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777766 444 468998888888777777776666655443
No 411
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=38.94 E-value=45 Score=32.78 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhhhhhcccHHHHHHH-HHHHHhhhhhhhhHHHHHhhcCCCccchhHHH
Q 005743 581 TQGEFVNSLIREVNNAVYQNIEDVVAF-VKWLDDELGFLVDERAVLKHFDWPEKKADTLR 639 (679)
Q Consensus 581 t~~~~I~~L~~eV~~~~~~dmedv~~F-v~wlD~eLs~LsDEraVLk~F~wPEkK~dalR 639 (679)
|+.+|++.|...++.....+.+|...| ..+.|+....=-.|.++.+.+|-|+.-+..+.
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 456889999999998878888888886 44667666555567889999999986555544
No 412
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=38.94 E-value=4.2e+02 Score=32.77 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
-++..+++..++-+...|.++++.+-...+|
T Consensus 522 ~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q 552 (809)
T KOG0247|consen 522 EKECRQKLMNAQLESQMLSSQLNDKKEQIEQ 552 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555555555667777777777666665
No 413
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=38.57 E-value=39 Score=37.42 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=8.6
Q ss_pred chhHHHHHHHhhcc
Q 005743 524 APQVVEFYHSLMKR 537 (679)
Q Consensus 524 aP~vvefY~SL~~r 537 (679)
+|.-..||--|.+.
T Consensus 175 ap~~~df~a~~~rQ 188 (407)
T PF04625_consen 175 APPNPDFFAQLQRQ 188 (407)
T ss_pred CCCCHHHHHHHHHH
Confidence 45566777666544
No 414
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.56 E-value=79 Score=36.97 Aligned_cols=7 Identities=57% Similarity=0.819 Sum_probs=3.7
Q ss_pred HHhhhcc
Q 005743 562 IGEIENR 568 (679)
Q Consensus 562 igEi~nR 568 (679)
-.|.+||
T Consensus 163 aeevenr 169 (900)
T KOG4425|consen 163 AEEVENR 169 (900)
T ss_pred hhhhhcc
Confidence 4555555
No 415
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.48 E-value=95 Score=30.61 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhh
Q 005743 279 DLSKQVEGLQMSRL 292 (679)
Q Consensus 279 ~L~~QlE~l~~~Re 292 (679)
+|..||+.|++++.
T Consensus 120 Gldeqi~~lkes~~ 133 (155)
T PF06810_consen 120 GLDEQIKALKESDP 133 (155)
T ss_pred cHHHHHHHHHhcCc
Confidence 45566666665543
No 416
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=38.46 E-value=48 Score=38.93 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=29.4
Q ss_pred HhhhhhchHHHHHH-HHHHHHHHHHhhhh---hcccccccccCCcccccccccccCCCCCCCCccccccCCcchhHHHHh
Q 005743 287 LQMSRLNEVEELAY-LRWVNSCLRDELQN---SCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKF 362 (679)
Q Consensus 287 l~~~Re~dvEELvy-lRwiNacLR~EL~d---~~sa~Dl~k~lSpkS~ek~~es~sS~~ss~~d~~~~s~sKk~~li~KL 362 (679)
|.+-|+++-.|.-. |+=-.+.|+|=--. |++--=--|+||-.|..+.. .|-+=.|++.+.||
T Consensus 132 FnKkrEaek~eveNtlkNt~iLlkyYKa~~Kyy~gE~~PLKTlSe~SlqkEd--------------NylnlEkFrvlSrl 197 (574)
T PF07462_consen 132 FNKKREAEKKEVENTLKNTEILLKYYKARAKYYIGEPFPLKTLSEESLQKED--------------NYLNLEKFRVLSRL 197 (574)
T ss_pred HhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcccccccHHHHhhhh--------------hhhhHHHHHHHHHH
Confidence 56667777666653 24344444332211 12222223455554433321 24456677777766
No 417
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.41 E-value=4.8e+02 Score=31.01 Aligned_cols=77 Identities=23% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhH----------hHHHHHHHHHhhhHHHhhhHHHHHHHHH-------HHHHHHhhhhhhhhcc-----ch
Q 005743 157 VLELERELEAKK----------IENDEIVRRVGMLEDEKTSLSEQLAALS-------VILERKNDNKNAINMG-----SS 214 (679)
Q Consensus 157 I~ELqrqL~~k~----------~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~-------~~~~Q~ee~~k~d~e~-----e~ 214 (679)
|.+||..|-..- .++.++..+....+.+.+.++..++... ...+|.=+-.+-++.. ..
T Consensus 324 ie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~teqkleelk~~f~a~q~K~a~ 403 (613)
T KOG0992|consen 324 IEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTEQKLEELKVQFTAKQEKHAE 403 (613)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776433 2556666666666666665555554322 1111211112222222 25
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 005743 215 SSQNLEMEVVELRRLNKEL 233 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeL 233 (679)
.+++|+.|..+-||.+.+-
T Consensus 404 tikeL~~El~~yrr~i~~~ 422 (613)
T KOG0992|consen 404 TIKELEIELEEYRRAILRN 422 (613)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 6777777777777766443
No 418
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=38.32 E-value=5.9e+02 Score=28.21 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQA 146 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ 146 (679)
.++...+..++..+..++.+...|+.
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666664
No 419
>PRK14154 heat shock protein GrpE; Provisional
Probab=38.08 E-value=3.8e+02 Score=28.07 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=52.9
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhH-----hHHHHHHHHHhhhHHHhhhH
Q 005743 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKK-----IENDEIVRRVGMLEDEKTSL 188 (679)
Q Consensus 116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~-----~Ei~~Lk~kI~sLEaE~~rL 188 (679)
..+....+..+|+.|+..+.+|+++-.++.+++.-| |.-+. +.++...-..+. -=+|-|.+-+.....+...+
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~ 129 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQV 129 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhH
Confidence 335556788999999999999999999999999999 22222 333222222222 14555555555433333344
Q ss_pred HHHHHHHHHHHHHHhh
Q 005743 189 SEQLAALSVILERKND 204 (679)
Q Consensus 189 q~qv~e~~~~~~Q~ee 204 (679)
...+.....+.+|-..
T Consensus 130 ~~l~eGvemi~k~l~~ 145 (208)
T PRK14154 130 KSMRDGMSLTLDLLHN 145 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444445454333
No 420
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.04 E-value=88 Score=36.30 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=18.5
Q ss_pred HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 161 qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
+.++++-..+...+..+|+.|++|++.|++|+
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555666667777777777666
No 421
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=37.94 E-value=8.1e+02 Score=29.69 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s 246 (679)
.+.++...+..|.+..+-|.+++..+..+.++.+++..-=..-.++|.++...|.|......-|--.|..++.+|..
T Consensus 352 ~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q 428 (632)
T PF14817_consen 352 EALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQ 428 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 55577777777777777777777777777776554431110112444444444444444444444444444444443
No 422
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=37.68 E-value=2e+02 Score=30.30 Aligned_cols=79 Identities=23% Similarity=0.154 Sum_probs=33.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re 292 (679)
+..+.+||.|+..| ...++++...++....++..-.+.......-+.+....++.....|...+-.+..+++.+...=.
T Consensus 67 e~~le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~ 145 (256)
T PF14932_consen 67 EEDLEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVS 145 (256)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777 33334444333333333333222211111111222223334444444444445555555544333
No 423
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=37.59 E-value=44 Score=34.50 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=11.7
Q ss_pred hccchhhhhhccCCCCCccccCCCC
Q 005743 380 NVLDKTWVQLEEGRSPRRRHSISGS 404 (679)
Q Consensus 380 ~~~~~~~~~~~~~~sp~r~~~~~~~ 404 (679)
.||...|-+|.+. |.|+...|
T Consensus 30 ~LIN~eWPRS~Ts----R~hSL~~S 50 (225)
T KOG3397|consen 30 TLINSEWPRSDTS----REHSLKKS 50 (225)
T ss_pred HHHhccCCccchh----hhhhhhcc
Confidence 3677777666543 44554433
No 424
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=37.55 E-value=2.1e+02 Score=31.87 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhH-hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743 128 DSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKK-IENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (679)
Q Consensus 128 ~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~-~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~ 199 (679)
+.+=..+..|+++...|+.+...+ .+... +.+|++-+..+. .|.+++..=|..|.+.+.++.++-..+..+.
T Consensus 133 d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 133 DWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 355566677777777777766666 22222 556666666655 3888888888888877777766654444443
No 425
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.46 E-value=1.2e+02 Score=27.37 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI 198 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~ 198 (679)
|.+||..|..-..+|+..+.....|+.||+-||.-|..++..
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999988777654
No 426
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.45 E-value=1e+02 Score=25.62 Aligned_cols=23 Identities=30% Similarity=0.422 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
.+..|..+|..|+.++..|..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 427
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.32 E-value=7.4e+02 Score=29.02 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=23.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD 261 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~ 261 (679)
++++-+.|+..-.+|....++|+....++..........+..++.+|..+
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~e 148 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEE 148 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 33444444444444444444444444444444444444555555665543
No 428
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.03 E-value=1.2e+02 Score=34.82 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHH--------HHHhhhhhhhhHHHHHhhc
Q 005743 584 EFVNSLIREVNNAVYQNIEDVVAFVK--------WLDDELGFLVDERAVLKHF 628 (679)
Q Consensus 584 ~~I~~L~~eV~~~~~~dmedv~~Fv~--------wlD~eLs~LsDEraVLk~F 628 (679)
..+..+..+|..+ .+++.++..|+. .-+.||...++|.++|.+=
T Consensus 246 ~qle~v~kdi~~a-~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q 297 (424)
T PF03915_consen 246 KQLETVAKDISRA-SKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ 297 (424)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555 666777777765 3378899999998887765
No 429
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.50 E-value=1.4e+02 Score=26.84 Aligned_cols=46 Identities=28% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 223 VVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 223 V~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
-.+|.+..++||....+|.-|.+ .+++|...|+.+|+-|..-|.-|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve-------------------~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVE-------------------EVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777666655543 34688888888888877766655
No 430
>PF15294 Leu_zip: Leucine zipper
Probab=36.27 E-value=5.2e+02 Score=28.31 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh---chh-HHHHHHHHH---------HhHhHHHHHHHHHhhhHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-KR---NPK-VLELERELE---------AKKIENDEIVRRVGMLEDE 184 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KE---QE~-I~ELqrqL~---------~k~~Ei~~Lk~kI~sLEaE 184 (679)
+-+..||++|+.--..|++|-..+|.+-..+ +| .+. +.+|+.-.. .+..++.-|..+++.|..+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 3378999999999999999999999887777 33 333 777776211 2223555555555555444
No 431
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.13 E-value=3e+02 Score=26.19 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=10.5
Q ss_pred HHHhhhhhchHHHHHHHHHHH
Q 005743 285 EGLQMSRLNEVEELAYLRWVN 305 (679)
Q Consensus 285 E~l~~~Re~dvEELvylRwiN 305 (679)
+.|.. -..|+++|+. .|..
T Consensus 117 e~fl~-g~~d~~~Fl~-~f~~ 135 (150)
T PF07200_consen 117 EEFLD-GEIDVDDFLK-QFKE 135 (150)
T ss_dssp -S-SS-SHHHHHHHHH-HHHH
T ss_pred HHHhC-CCCCHHHHHH-HHHH
Confidence 44543 4678899984 3444
No 432
>smart00338 BRLZ basic region leucin zipper.
Probab=36.13 E-value=98 Score=25.69 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
+.+|+.++..-..+...|..+|..|+.++..|.+++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555556666666655555555443
No 433
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.11 E-value=2.6e+02 Score=25.77 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
++++-|+..+..|.+..+.|+....++...+...
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554444443
No 434
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.94 E-value=2.8e+02 Score=30.96 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHH-hhhHHHhhhHHHHH
Q 005743 131 RSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRV-GMLEDEKTSLSEQL 192 (679)
Q Consensus 131 r~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI-~sLEaE~~rLq~qv 192 (679)
++...+||.+|..|...|..- ||.|+ ++|-++.|..+..++..+.+.- ..|+.+.+.|++++
T Consensus 329 ~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~ 393 (406)
T KOG3859|consen 329 NEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEV 393 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888777776 88888 8888888888776665554322 33444444444433
No 435
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.85 E-value=3.3e+02 Score=28.98 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhH-----hHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKK-----IENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~-----~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
..+..+|+.|+..+.+|+.+-.++.+++.-| |..+. +.++......+. -=+|-|.+-+..+..+.........
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~ 149 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHR 149 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHH
Confidence 3466778888888888888888888888888 22222 333332222222 2456666666555443333333344
Q ss_pred HHHHHHHH
Q 005743 194 ALSVILER 201 (679)
Q Consensus 194 e~~~~~~Q 201 (679)
.+..+.+|
T Consensus 150 Gve~i~k~ 157 (238)
T PRK14143 150 SYQGLYKQ 157 (238)
T ss_pred HHHHHHHH
Confidence 44444444
No 436
>PF15456 Uds1: Up-regulated During Septation
Probab=35.78 E-value=3.3e+02 Score=26.20 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE 184 (679)
|.+|.+++..-...++-+..++. |+..
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k 50 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESK 50 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 55555555555555555555555 4443
No 437
>PRK00106 hypothetical protein; Provisional
Probab=35.70 E-value=8.2e+02 Score=29.05 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=31.7
Q ss_pred hhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH
Q 005743 209 INMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD 261 (679)
Q Consensus 209 d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~ 261 (679)
...++++-++|+..-.+|....++|+..+.++....+.....+..++.+|..+
T Consensus 117 ee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e 169 (535)
T PRK00106 117 DENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 33444555555555556666666666666666666666666666666666654
No 438
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=35.66 E-value=54 Score=35.19 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=4.7
Q ss_pred CCCCCCCCCCC
Q 005743 505 PPPPAPKFSGK 515 (679)
Q Consensus 505 PPPPPP~~l~R 515 (679)
++||-|+...|
T Consensus 197 ~~~p~pg~p~~ 207 (341)
T KOG2893|consen 197 GGPPMPGPPQR 207 (341)
T ss_pred CCCCCCCCCcc
Confidence 33343444444
No 439
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.53 E-value=1.2e+02 Score=30.41 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=50.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhh
Q 005743 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKT 186 (679)
Q Consensus 119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~ 186 (679)
+.++...-|..|+..|..-+++-..+-.+|..| ++.-. +.+++.-|.-....|..|+.+|..++++.+
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 335567889999999999999999999999888 22222 667778888888888888888888777643
No 440
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.42 E-value=2.6e+02 Score=27.66 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 005743 226 LRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN 305 (679)
Q Consensus 226 LRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiN 305 (679)
.+.....+..+...|...|..+..+|..|.. ....+..++.++. +|....+......+.++.++.+-.+++
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~--~~~d~eeLk~~i~-------~lq~~~~~~~~~~e~~l~~~~~~~ai~ 88 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKK--SAKDNEELKKQIE-------ELQAKNKTAKEEYEAKLAQMKKDSAIK 88 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566777777777777777766654 1223334555555 445555555556666666666655555
Q ss_pred HHH
Q 005743 306 SCL 308 (679)
Q Consensus 306 acL 308 (679)
..|
T Consensus 89 ~al 91 (155)
T PF06810_consen 89 SAL 91 (155)
T ss_pred HHH
Confidence 443
No 441
>PRK12704 phosphodiesterase; Provisional
Probab=35.41 E-value=5.5e+02 Score=30.12 Aligned_cols=8 Identities=38% Similarity=0.206 Sum_probs=3.2
Q ss_pred HHhhhhhh
Q 005743 641 AAFGYRDL 648 (679)
Q Consensus 641 AA~lY~~L 648 (679)
|..+.+++
T Consensus 484 ~~~la~~i 491 (520)
T PRK12704 484 AVRLARDI 491 (520)
T ss_pred HHHHHHHH
Confidence 33444443
No 442
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=35.40 E-value=1.5e+02 Score=26.03 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=33.7
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
++.+. ..+|+.++..-..+-..|..+|..|.-.-.+|.+++..+
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445 889999999888877788888888887777777776543
No 443
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=35.31 E-value=7.7e+02 Score=28.67 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
..+++.|.|+.+|+..|.+|-++. +++.+++... |+. ...+|.... .++.++..+++.+.+
T Consensus 48 a~~~~~E~~l~~Lq~e~~~l~e~~----v~~~a~~~~~------t~~----~~~~en~~~-----r~~~eir~~~~q~~e 108 (459)
T KOG0288|consen 48 AKLQEKELELNRLQEENTQLNEER----VREEATEKTL------TVD----VLIAENLRI-----RSLNEIRELREQKAE 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH------HHH----HHHHHHHHH-----HHHHHHHHHHHhhhh
Confidence 456777777766655555544332 2233332221 222 223444444 345556666666665
Q ss_pred hHHHHHHHHHHH
Q 005743 294 EVEELAYLRWVN 305 (679)
Q Consensus 294 dvEELvylRwiN 305 (679)
-..-.+-|+|--
T Consensus 109 ~~n~~~~l~~~~ 120 (459)
T KOG0288|consen 109 FENAELALREMR 120 (459)
T ss_pred hccchhhHHHHH
Confidence 555555555543
No 444
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.16 E-value=3.5e+02 Score=24.58 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.++..|..+|..|+.....|+.++.++..+..
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~ 37 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQKLEAQLTEYEKAKE 37 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777776666
No 445
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.13 E-value=7.6e+02 Score=28.50 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH-HHHHHHHHHHHhhhcChHHHHHHHHHhhhhhch
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD-IISKIKAEALVLRHTNEDLSKQVEGLQMSRLNE 294 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~-~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~d 294 (679)
.+.|-+-|.+.-|.|.+||-+|-++..-|.+.+..-..+.+ |.. ..+++ .+.+.|+..-.|.++ -.|++.|++-
T Consensus 287 ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~K--EAqareakl--qaec~rQ~qlaLEEK-aaLrkerd~L 361 (442)
T PF06637_consen 287 ARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGK--EAQAREAKL--QAECARQTQLALEEK-AALRKERDSL 361 (442)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34445556666788999999999988888777643333322 211 11122 233445555444444 5666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccc
Q 005743 295 VEELAYLRWVNSCLRDELQNSCSTTN 320 (679)
Q Consensus 295 vEELvylRwiNacLR~EL~d~~sa~D 320 (679)
..||-..+.--+.++..+.--++|+|
T Consensus 362 ~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 362 AKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 66666544444444444433334433
No 446
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.11 E-value=7.9e+02 Score=28.73 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHH
Q 005743 223 VVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL 298 (679)
Q Consensus 223 V~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEEL 298 (679)
+.-+.+-..-||-|---|...|..||.++. | -.+...+|---.|.+|+.|...|..-.+.|++-.--|
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~------e--k~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQ------E--KLMQYRAEEVDHREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444445555555555555554432 1 1234455555577777787777777777775544333
No 447
>smart00338 BRLZ basic region leucin zipper.
Probab=35.07 E-value=88 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=13.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLA 241 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~ 241 (679)
+..+..|+.+..+|+..+..|+.|+..|.
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 448
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=35.01 E-value=5.6e+02 Score=26.96 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=29.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEAL 271 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~ 271 (679)
+-++.|++-...+=........+.+.|+.||--|+..+.... .-|+++..+.+
T Consensus 123 ~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE-----RsVakLeke~D 175 (205)
T KOG1003|consen 123 SNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE-----RRVAKLEKERD 175 (205)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH-----HHHHHHcccHH
Confidence 344455555555555555566666777777777776654321 23444444444
No 449
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.88 E-value=4.8e+02 Score=29.78 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=40.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-----hhchh---HHHHHHHHHHhH----hHHHHHHHHHhhhHHH
Q 005743 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELS-EW-----KRNPK---VLELERELEAKK----IENDEIVRRVGMLEDE 184 (679)
Q Consensus 118 ~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELl-Ey-----KEQE~---I~ELqrqL~~k~----~Ei~~Lk~kI~sLEaE 184 (679)
........|+..++.....|++.=.+|..++. +| .-||. +.-|+.||..-+ +||--|++.++++|+.
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33344567777888888888887777777554 33 22222 445555555333 4666677666666654
No 450
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.51 E-value=1.5e+02 Score=28.03 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
+..|+.+|..-..++..|+..|..|-+||..|+-+...+.....
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788888888888888888777766555444433
No 451
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=34.39 E-value=5.4e+02 Score=26.60 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHh-hhHHHhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVG-MLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~-sLEaE~~rLq~qv~e~~~~~~ 200 (679)
|..|..++...-.+|..=..++. ........|++++.+......
T Consensus 20 i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~ 64 (206)
T PF14988_consen 20 IEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQA 64 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665555544444332 233334555555555444433
No 452
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=34.27 E-value=1.1e+03 Score=30.03 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=44.3
Q ss_pred chhhhhHHHHHH-HHHHHHHHHH-HHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743 213 SSSSQNLEMEVV-ELRRLNKELQ-MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290 (679)
Q Consensus 213 e~~l~~LE~EV~-ELRR~NkeLQ-~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~ 290 (679)
+.-.+.|-+|+. ||...-++|+ .+-..|.++-+.|.++-. ...+-++.-+|.++|.+.+++++....
T Consensus 956 ~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~-----------kefE~~mrdhrselEe~kKe~eaiine 1024 (1424)
T KOG4572|consen 956 EEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHE-----------KEFEIEMRDHRSELEEKKKELEAIINE 1024 (1424)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 455566655553 3444444443 345566666666664421 134567788899999999888887655
Q ss_pred hhchHHHH
Q 005743 291 RLNEVEEL 298 (679)
Q Consensus 291 Re~dvEEL 298 (679)
.+.--.|+
T Consensus 1025 iee~eaeI 1032 (1424)
T KOG4572|consen 1025 IEELEAEI 1032 (1424)
T ss_pred HHHHHHHH
Confidence 44333333
No 453
>PRK10698 phage shock protein PspA; Provisional
Probab=34.13 E-value=5.5e+02 Score=26.64 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=7.0
Q ss_pred hHHHHHHHHHhh
Q 005743 278 EDLSKQVEGLQM 289 (679)
Q Consensus 278 e~L~~QlE~l~~ 289 (679)
.+|..++..|..
T Consensus 191 ~~l~~e~~~le~ 202 (222)
T PRK10698 191 KSLDQQFAELKA 202 (222)
T ss_pred CCHHHHHHHhhc
Confidence 346666666643
No 454
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.99 E-value=51 Score=35.40 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=34.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
++++.|+.|+.+|++|+- +.+||+++......|+..+.++..+
T Consensus 60 ~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~ 102 (262)
T COG1729 60 QLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSL 102 (262)
T ss_pred HHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456889999999999999 8899999888777777776665444
No 455
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.98 E-value=1e+03 Score=29.71 Aligned_cols=85 Identities=22% Similarity=0.240 Sum_probs=52.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh-------------------hccchhHHHHHHHH--HHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL-------------------AKASESDIISKIKA--EALV 272 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~-------------------~~~~Es~~Va~~~e--E~~~ 272 (679)
+-|..-|.|++.|.|.|-++.+ +|.+++..-.+++..+ ++++-.++-.+|+. +-..
T Consensus 1002 qlL~rHekE~eQmqrynQr~ie---~Lk~rqtqerarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEe 1078 (1187)
T KOG0579|consen 1002 QLLARHEKEMEQMQRYNQREIE---DLKRRQTQERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEE 1078 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHH
Confidence 5577788999999999977654 4555555444433322 14455555555543 3344
Q ss_pred hhhcChHHH------HHHHHHhhhhhchHHHHHHH
Q 005743 273 LRHTNEDLS------KQVEGLQMSRLNEVEELAYL 301 (679)
Q Consensus 273 LR~~Ne~L~------~QlE~l~~~Re~dvEELvyl 301 (679)
+|..++.+. +|+..|+..-+..+-||-.|
T Consensus 1079 kRqk~er~~q~qKhenqmrdl~~qce~ni~EL~ql 1113 (1187)
T KOG0579|consen 1079 KRQKAEREDQDQKHENQMRDLKEQCEENIIELDQL 1113 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665543 46667777777777777754
No 456
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.92 E-value=5.7e+02 Score=26.71 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 225 ELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 225 ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
+.+.....+.....+...||..++.
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 457
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=33.91 E-value=4.9e+02 Score=25.92 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHh
Q 005743 133 LLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKI 169 (679)
Q Consensus 133 ~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~ 169 (679)
....|++|+...+.+|.+- +..+. ..+-+.+|.....
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~ 70 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLET 70 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999999999888 22211 4455555544433
No 458
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=33.85 E-value=3.3e+02 Score=23.93 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
.+|+.|+..|+-|+.+-..+-++|..+ .++.. |.++=...-..-.+++.++.++..+++
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e~ 65 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAEA 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 589999999999999999999999999 77776 777766666666788888887776653
No 459
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.78 E-value=4.4e+02 Score=28.80 Aligned_cols=10 Identities=20% Similarity=0.683 Sum_probs=5.5
Q ss_pred hhHHHHhhcC
Q 005743 356 LSFIKKFKKW 365 (679)
Q Consensus 356 ~~li~KLKkW 365 (679)
.+|+++|..+
T Consensus 153 ~~Fl~~L~~f 162 (344)
T PF12777_consen 153 DNFLQRLKNF 162 (344)
T ss_dssp TTHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 3456666555
No 460
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.37 E-value=6.4e+02 Score=27.76 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH--HHHHhhhhhhhh
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ--MEKRNLACKFSS 246 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ--~EKreL~~KL~s 246 (679)
=||+.|+-+|..||+..-.|+.++.+..+..++.+ ..+..|-.|+.+||...++.. .++.-|++=-+.
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K----------~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~ 181 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQK----------RAHDSLREELDELREQLKQRDELIEKHGLVLVPDA 181 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence 38888888888887776666655543332222111 223344455555555544332 233333333321
Q ss_pred hHHHhhh-hhc--cchhHHHHHHHHHHHHhhhc-ChHHHHHHHHHhhhhhchHHHHHHH
Q 005743 247 MENQLTS-LAK--ASESDIISKIKAEALVLRHT-NEDLSKQVEGLQMSRLNEVEELAYL 301 (679)
Q Consensus 247 Ae~~~~~-~~~--~~Es~~Va~~~eE~~~LR~~-Ne~L~~QlE~l~~~Re~dvEELvyl 301 (679)
.-...+. +.+ .+-...|+ .+.++.|-.+ +.-|...|+.|-..|..-++++-.|
T Consensus 182 ~ngd~~~~~~~~~~~~~~~vs--~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~kl 238 (302)
T PF09738_consen 182 TNGDTSDEPNNVGHPKRALVS--QEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKL 238 (302)
T ss_pred CCCccccCccccCCCcccccc--hhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 000 01222333 7888889888 5667789999988887777776653
No 461
>PRK14127 cell division protein GpsB; Provisional
Probab=33.25 E-value=1.1e+02 Score=28.99 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh----------hhhhhccchhhhhHHHHH
Q 005743 164 LEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN----------KNAINMGSSSSQNLEMEV 223 (679)
Q Consensus 164 L~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~----------~k~d~e~e~~l~~LE~EV 223 (679)
|..=+.+...|..++..|+.++.+|++++.++..-...-+.. ..-..+|-++|..||.+|
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
No 462
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=33.16 E-value=4.1e+02 Score=30.53 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.|+..+-.+|.-+.+=.++|.+++|+.....+
T Consensus 307 ~el~~~l~~V~~~~~vr~~ltaemAd~~~~ik 338 (431)
T PF14782_consen 307 EELREILEKVDELNEVRQRLTAEMADHSNLIK 338 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777888888888888888776655
No 463
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=33.12 E-value=31 Score=40.46 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh-cccccccc
Q 005743 294 EVEELAYLRWVNSCLRDELQNS-CSTTNSEK 323 (679)
Q Consensus 294 dvEELvylRwiNacLR~EL~d~-~sa~Dl~k 323 (679)
++-++|. +|...| .|+..+ ..+.|-+.
T Consensus 344 ~Il~~v~-k~~~l~--~~~~~Le~~~~D~~R 371 (619)
T PF03999_consen 344 PILELVE-KWESLW--EEMEELEESSKDPSR 371 (619)
T ss_dssp HHHHHHH-HHHHHH--HHHHHHHHHHH-CCG
T ss_pred HHHHHHH-HHHHHH--HHHHHHHHHhcChhh
Confidence 4566777 999977 566555 45566444
No 464
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.96 E-value=3.2e+02 Score=31.93 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=4.3
Q ss_pred HHHHHH
Q 005743 300 YLRWVN 305 (679)
Q Consensus 300 ylRwiN 305 (679)
.++|++
T Consensus 172 ~~~Wv~ 177 (472)
T TIGR03752 172 GVVWVE 177 (472)
T ss_pred ceEeec
Confidence 468887
No 465
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=32.90 E-value=2.9e+02 Score=27.81 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHhh---hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 127 LDSLRSLLQESKERE--------FKLQAELSEW---KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 127 I~~Lr~~V~eLqERE--------~kLE~ELlEy---KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
++.|-.+|+.|-++. ..--.|+.|| =++|. -.+....|+..-.||+.|+..++..|.|+.+.+..+.+
T Consensus 23 ~d~~~~lVe~lve~SdfY~~gvEfdw~~eFveyV~cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 23 NDTFIKLVEELVERSDFYSSGVEFDWKDEFVEYVDCVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 456666777766653 3334678888 55555 45555667777789999999999999998888777776
Q ss_pred HHHHH
Q 005743 195 LSVIL 199 (679)
Q Consensus 195 ~~~~~ 199 (679)
..+.+
T Consensus 103 ~LK~k 107 (158)
T PF03112_consen 103 LLKIK 107 (158)
T ss_pred HHHHH
Confidence 66544
No 466
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.87 E-value=39 Score=38.87 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=4.6
Q ss_pred hhchHHHHHH
Q 005743 291 RLNEVEELAY 300 (679)
Q Consensus 291 Re~dvEELvy 300 (679)
||+.-+|...
T Consensus 265 RFnS~~e~~~ 274 (483)
T KOG2236|consen 265 RFNSEEEISF 274 (483)
T ss_pred ecCchhhhhh
Confidence 4444444443
No 467
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.49 E-value=9.4e+02 Score=28.81 Aligned_cols=51 Identities=31% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhcCh---HHHHHHHHHhhhhhchHHHHHHHHH-----HHHHHHHhhhhh
Q 005743 265 KIKAEALVLRHTNE---DLSKQVEGLQMSRLNEVEELAYLRW-----VNSCLRDELQNS 315 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne---~L~~QlE~l~~~Re~dvEELvylRw-----iNacLR~EL~d~ 315 (679)
++++|+..|....+ .|..+++.+...-..-.+.|...|- +..||-.||+..
T Consensus 329 ~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 329 KIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666654443 4555666666665556666664332 335666777665
No 468
>PLN02939 transferase, transferring glycosyl groups
Probab=32.33 E-value=1.2e+03 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=20.3
Q ss_pred cccccccccccchhhhhcCCCCc----ccCccccccccccc
Q 005743 45 LKGFTVDKKTKSQTTATSKKLPL----TTNSSDVTNQKNSI 81 (679)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~vk~~n~~ 81 (679)
-.||++-+|.|.....+.+..|. -.|+.|+...=|..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (977)
T PLN02939 39 RRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTS 79 (977)
T ss_pred CCCchhhhhhhhccCCCCcccccccccccCccccccccccc
Confidence 46788888776665554444432 23445554444433
No 469
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.29 E-value=6.1e+02 Score=27.57 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhH------hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHH
Q 005743 157 VLELERELEAKK------IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLN 230 (679)
Q Consensus 157 I~ELqrqL~~k~------~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~N 230 (679)
-+.|+++....+ +....+...|.-|.+|+++|+.+.--+....+ -.+. .-.+|..++++||...
T Consensus 72 RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~---~L~~-------~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 72 RRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE---SLLA-------KNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh-------hhHHHHHHHHHHHHHH
Confidence 667888877655 57888899999999999999876543332221 1111 1234444444444444
Q ss_pred HHH----HHHHHhhhhhhhhhHHHhhhhhccch--hH------HHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHH
Q 005743 231 KEL----QMEKRNLACKFSSMENQLTSLAKASE--SD------IISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL 298 (679)
Q Consensus 231 keL----Q~EKreL~~KL~sAe~~~~~~~~~~E--s~------~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEEL 298 (679)
.+| ||+.+=. -+.+.+.-+.+--++- .. +-+-.+.|-..+=..+--+-.++..|--+...+|.=+
T Consensus 142 ~~~~~~~~~~~~v~---eee~~~~gaev~~v~G~~~a~saaa~~~ap~Qqeqa~~~~~~n~~p~~l~~l~~~~~~~Is~~ 218 (292)
T KOG4005|consen 142 AELKQQQQHNTRVI---EEENASAGAEVWYVTGGHTAVSAAAGGAAPEQQEQALTLESCNPLPTLLDMLGVDEEFDISRL 218 (292)
T ss_pred HhhHHHHHHhhHHH---hhhhhccCCceEEecCCchhHhHhhcccChhhHhhhhcccccCCcHHHHHHHccchhhhHHHH
Confidence 433 3332211 1111111111000000 00 0001122222222334467888889999999999888
Q ss_pred HHH-HHHHHHH
Q 005743 299 AYL-RWVNSCL 308 (679)
Q Consensus 299 vyl-RwiNacL 308 (679)
.|+ -|.-+|.
T Consensus 219 ~~lt~~~~~c~ 229 (292)
T KOG4005|consen 219 EELTESLLACI 229 (292)
T ss_pred HHHHHHHHHHh
Confidence 888 7888884
No 470
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.18 E-value=9.5e+02 Score=28.74 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHH
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL 298 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEEL 298 (679)
.+-+|.-+|+....+.-++.++...|.++-...+..+..+| +-+. +|..||..++.-.+.-+.||
T Consensus 344 ~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~te--------qkle-------elk~~f~a~q~K~a~tikeL 408 (613)
T KOG0992|consen 344 IETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTE--------QKLE-------ELKVQFTAKQEKHAETIKEL 408 (613)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666555444433322222 2222 66677777777777777776
Q ss_pred H
Q 005743 299 A 299 (679)
Q Consensus 299 v 299 (679)
-
T Consensus 409 ~ 409 (613)
T KOG0992|consen 409 E 409 (613)
T ss_pred H
Confidence 5
No 471
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.13 E-value=1.1e+02 Score=25.29 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
..+..||.+|.+|...|..|..+...|...+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444443
No 472
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.07 E-value=7.5e+02 Score=27.52 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 005743 221 MEVVELRRLNKELQM 235 (679)
Q Consensus 221 ~EV~ELRR~NkeLQ~ 235 (679)
.|..|+||.-++++.
T Consensus 387 ieareerrkqkeeek 401 (445)
T KOG2891|consen 387 IEAREERRKQKEEEK 401 (445)
T ss_pred HHHHHHHHhhhHHHH
Confidence 356777777666553
No 473
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=32.06 E-value=81 Score=28.00 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=44.0
Q ss_pred HHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhh
Q 005743 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDEL 312 (679)
Q Consensus 234 Q~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL 312 (679)
+.++.++..||..++.|+..+.++.|.+ ..+++++.|+...+..=..=...++. ..++.|+...+
T Consensus 1 h~~k~~ll~RL~rIeGQv~gI~~Miee~-------------~~C~dIl~Qi~Av~~Al~~~~~~vl~-~hl~~c~~~~~ 65 (85)
T PF02583_consen 1 HEDKKDLLNRLKRIEGQVRGIERMIEED-------------RDCEDILQQIAAVRSALDKVGKLVLE-DHLEHCLVEAI 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------E-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHh
Confidence 5688999999999999999887765543 22348888888777654443334443 56777765433
No 474
>PF12312 NeA_P2: Nepovirus subgroup A polyprotein ; InterPro: IPR021081 Proteins in this entry are typically between 259 and 1110 amino acids in length. They are found in association with PF03688 from PFAM, PF03689 from PFAM and PF03391 from PFAM. This entry includes RNA2 polyprotein (Protein 2A) which is implicated in RNA2 replication.
Probab=31.93 E-value=26 Score=36.61 Aligned_cols=14 Identities=57% Similarity=1.196 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 005743 497 PPPLPRPPPPPPAP 510 (679)
Q Consensus 497 ppP~PppPPPPPPP 510 (679)
|..|.-||||||||
T Consensus 196 pGgp~lpppPPpP~ 209 (258)
T PF12312_consen 196 PGGPCLPPPPPPPP 209 (258)
T ss_pred CCCCcccCCCCCCc
No 475
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=31.78 E-value=55 Score=28.08 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=20.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHH
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEK 237 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EK 237 (679)
...|..|=.||.-|++.|++|+++.
T Consensus 20 ~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 20 AQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHhccccceee
Confidence 3668889999999999999888753
No 476
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.78 E-value=86 Score=31.62 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
+.|+.|+.+|+..|+.|+.|+..|..++...+..+..|
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=31.72 E-value=6e+02 Score=26.28 Aligned_cols=109 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hhchh---HHHHHHHHHHhHh---HHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEW----KRNPK---VLELERELEAKKI---ENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~---I~ELqrqL~~k~~---Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
|..||..+..|+.|+..|+.++.+. |+.-. ..-.-.=|+.+.. +++.+..++..|+.....++..-....
T Consensus 29 Il~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~e 108 (191)
T PTZ00446 29 ILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKI 108 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH--HHhhhhhhhhccc--hhhhhHHHHHHHHHHHHHHHHH
Q 005743 197 VILE--RKNDNKNAINMGS--SSSQNLEMEVVELRRLNKELQM 235 (679)
Q Consensus 197 ~~~~--Q~ee~~k~d~e~e--~~l~~LE~EV~ELRR~NkeLQ~ 235 (679)
.+.. +--.+++.-...- ..+.+|-.++.|......+++.
T Consensus 109 v~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIse 151 (191)
T PTZ00446 109 AVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQ 151 (191)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
No 478
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=31.70 E-value=60 Score=28.09 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
+..|...|..||+|..||+++++
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 479
>PHA03282 envelope glycoprotein E; Provisional
Probab=31.52 E-value=59 Score=37.76 Aligned_cols=40 Identities=38% Similarity=0.643 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCcc-----cccCCCCCCCCCCCCCCCCCCCCCCC
Q 005743 475 PPRPSCGISGGTKE-----ERQAQIPQPPPLPRPPPPPPAPKFSG 514 (679)
Q Consensus 475 PP~ps~~~~~~~~~-----~~~~gvpPppP~PppPPPPPPP~~l~ 514 (679)
+|++-.+.++++++ .-..|.|+|+|||-+|||-|++.+.+
T Consensus 161 ~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~p~~~~~~ 205 (540)
T PHA03282 161 GPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205 (540)
T ss_pred cCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcCcCc
No 480
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.45 E-value=8.9e+02 Score=28.21 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHh----HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhh
Q 005743 134 LQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKI----ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKN 207 (679)
Q Consensus 134 V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~----Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k 207 (679)
++.|+++-..|+-.|++. +-|.. ..+-.++=..+.. -+..|+..|.+|++..+.|+.+++...
T Consensus 175 ~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sP----------- 243 (446)
T KOG4438|consen 175 VKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSP----------- 243 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-----------
Q ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH---HHhhhhhccchhHHHH-HHHHHHHHhhhcChHHHHH
Q 005743 208 AINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME---NQLTSLAKASESDIIS-KIKAEALVLRHTNEDLSKQ 283 (679)
Q Consensus 208 ~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe---~~~~~~~~~~Es~~Va-~~~eE~~~LR~~Ne~L~~Q 283 (679)
+.+...+.++-.-+...+.+-.+|+..-.-|..++..++ .....+.....++.|+ ...+-....+.+|-.|..|
T Consensus 244 --eKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q 321 (446)
T KOG4438|consen 244 --EKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQ 321 (446)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 005743 284 VE 285 (679)
Q Consensus 284 lE 285 (679)
++
T Consensus 322 ~e 323 (446)
T KOG4438|consen 322 IE 323 (446)
T ss_pred HH
No 481
>smart00340 HALZ homeobox associated leucin zipper.
Probab=31.19 E-value=85 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVIL 199 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~ 199 (679)
+.-+.|++=-++|-.||.||+-+|+++.+++
T Consensus 5 vdCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 5 VDCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 482
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.03 E-value=91 Score=30.58 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHhhhc-ChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 266 IKAEALVLRHT-NEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 266 ~~eE~~~LR~~-Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
+..=...||.. +++|..|+++|...+++|++||+. ++.+ ...++.+.
T Consensus 73 L~~il~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~~-~~~~--~~~~~~~~ 120 (197)
T PF06367_consen 73 LLDILEKLRNLEDDDLQEQIDIFEENEEEDEEELLE-RFDS--KTVDLSDP 120 (197)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHSSSH
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHH-hhcc--cccccccH
No 483
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.02 E-value=4.3e+02 Score=24.37 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhchh-H----------------------------
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW-------------KRNPK-V---------------------------- 157 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-------------KEQE~-I---------------------------- 157 (679)
...+...+..|+..+..|+..-..|...+.+| ...+. |
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~v 80 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYV 80 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEE
Q ss_pred -HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 158 -LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 158 -~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
+.++.-++.-...++.|...+..|+..-..+++++........|
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 484
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.94 E-value=1.1e+02 Score=35.71 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccCCCCCCC------CCCCCCCCCCCCCCCCCCCCCccccchhHHHHHHHhhcc
Q 005743 468 VLRVPNPPPRPSCGISGGTKEERQAQIPQPP------PLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKR 537 (679)
Q Consensus 468 ~~rvp~PPP~ps~~~~~~~~~~~~~gvpPpp------P~PppPPPPPPP~~l~Rs~~~kv~RaP~vvefY~SL~~r 537 (679)
+.+...+||.|.+.....|.+.++..++|.| |.+++.++|+|++........+..--.++.+.+..+...
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 477 (585)
T PRK14950 402 PVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAIWKQILRD 477 (585)
T ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCcCCCCCCCCCCcccccCCCCcchhHHHHHHHHHHHHHH
No 485
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.88 E-value=1.4e+03 Score=30.28 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
|..-+.+|...+++-..-|.-+--. .|++. +.+|+.+..-...+.......+.+-..+-.+-+..+..+...-+.
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhhhhccc----hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcC
Q 005743 202 KNDNKNAINMGS----SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTN 277 (679)
Q Consensus 202 ~ee~~k~d~e~e----~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~N 277 (679)
-.+.+.+..+.. .+.+.|-.|+.+|=-.-.+--....+|...++..+.++....- +++.++.+++
T Consensus 1673 ~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~a-----eL~~Le~r~~------ 1741 (1758)
T KOG0994|consen 1673 VDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAA-----ELAGLEKRVE------ 1741 (1758)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----HhhhHHHHHH------
Q ss_pred hHHHHHHHH
Q 005743 278 EDLSKQVEG 286 (679)
Q Consensus 278 e~L~~QlE~ 286 (679)
.+++.|..
T Consensus 1742 -~vl~~I~~ 1749 (1758)
T KOG0994|consen 1742 -SVLDHINE 1749 (1758)
T ss_pred -HHHHHHhh
No 486
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.72 E-value=2.6e+02 Score=25.56 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhh
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTS 187 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~r 187 (679)
...||+.|...+.....+=..++..|... ---|.-..|++++..-+..+.-...++..|.-||.+
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
No 487
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=30.67 E-value=6e+02 Score=26.53 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH-----------HHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHH
Q 005743 162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQL-----------AALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLN 230 (679)
Q Consensus 162 rqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv-----------~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~N 230 (679)
+.+...++++--....-.-|++++.-++-.+ +++.....|+.++..+.....+....|+.|-.+.+..+
T Consensus 91 ~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL 170 (192)
T PF11180_consen 91 RDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQL 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhh
Q 005743 231 KELQMEKRNLACKFSS 246 (679)
Q Consensus 231 keLQ~EKreL~~KL~s 246 (679)
..||.+.+.|-...+.
T Consensus 171 ~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 171 RQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHhcC
No 488
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.61 E-value=2.8e+02 Score=28.63 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHh--HHHHHHHHHhhhHHHhhhHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKI--ENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~--Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
...|+..|..-|..|+++-+.|+....-. |+ |++|+..|-+..+ +|-.|+..+...+.....+.+
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~v---eaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYV---EAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=30.60 E-value=1.2e+02 Score=33.02 Aligned_cols=58 Identities=24% Similarity=0.514 Sum_probs=0.0
Q ss_pred cCCCCCC-CCCCCCCCCCCCcccccCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCccccch
Q 005743 468 VLRVPNP-PPRPSCGISGGTKEERQAQIPQPPPLPR-------PPPPPPAPKFSGKSTTGVVQRAP 525 (679)
Q Consensus 468 ~~rvp~P-PP~ps~~~~~~~~~~~~~gvpPppP~Pp-------pPPPPPPP~~l~Rs~~~kv~RaP 525 (679)
+-..|.| .|..+.+.++.++.+...+.|.+||.+. +||+|.+|...+-.-..+.-+.|
T Consensus 39 AdPaPtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P 104 (297)
T PF07174_consen 39 ADPAPTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPP 104 (297)
T ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 490
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.55 E-value=55 Score=38.86 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 005743 467 RVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPP 505 (679)
Q Consensus 467 r~~rvp~PPP~ps~~~~~~~~~~~~~gvpPppP~PppPP 505 (679)
.++..|+-|..++...|...+++.+.++|||++++|+||
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (620)
T PRK14954 406 PGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPP 444 (620)
T ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 491
>PRK10869 recombination and repair protein; Provisional
Probab=30.53 E-value=9.5e+02 Score=28.23 Aligned_cols=182 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHH-HhhhHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPKVLELERELEAKKIENDEIVRRVGMLED-EKTSLSEQLA 193 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-------KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEa-E~~rLq~qv~ 193 (679)
....+++.|+..-++.+++.--|+-|+.|. .|-|.+.+-.+.|.-...=...+..-+..|.. +....-+.+.
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~ 247 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLY 247 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Q ss_pred HHHHHHHH-------------------------Hhhhhhhhhccc---hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 194 ALSVILER-------------------------KNDNKNAINMGS---SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 194 e~~~~~~Q-------------------------~ee~~k~d~e~e---~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
.......+ ..+...--..++ .++.++|..+..|++.-+.-=-.-.++...++
T Consensus 248 ~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~ 327 (553)
T PRK10869 248 SAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQ 327 (553)
T ss_pred HHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q ss_pred hhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH--HHHHHH
Q 005743 246 SMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA--YLRWVN 305 (679)
Q Consensus 246 sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv--ylRwiN 305 (679)
.++..+..+.+ -.+.+..++++...++..=..+..+|-..+..-+..+++-| +|+-++
T Consensus 328 ~l~~eL~~L~~--~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 328 QLLEEQQQLDD--QEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 492
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=30.26 E-value=49 Score=30.87 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCC
Q 005743 483 SGGTKEERQAQIPQPPPLPRPPPPPPA 509 (679)
Q Consensus 483 ~~~~~~~~~~gvpPppP~PppPPPPPP 509 (679)
|.-|. ...-..+||+|+|-|||++|+
T Consensus 60 P~~P~-~~~~p~~~~~p~P~pppr~PS 85 (97)
T PF04834_consen 60 PVYPS-PASIPLQPPIPQPEPPPRPPS 85 (97)
T ss_pred CCCCC-cccCCCCCCCCCCCCCCCCCC
No 493
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=30.13 E-value=6.9e+02 Score=26.49 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHhh----hhchh--HHHHHHHHHHhHhHHHH-HHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccc-----
Q 005743 146 AELSEW----KRNPK--VLELERELEAKKIENDE-IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGS----- 213 (679)
Q Consensus 146 ~ELlEy----KEQE~--I~ELqrqL~~k~~Ei~~-Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e----- 213 (679)
.+.++. +|-+. ...-+.+......++.. +..++..+..+...|+.++.+...-..+......++..+.
T Consensus 98 s~pl~l~iF~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~ 177 (301)
T PF14362_consen 98 SEPLELKIFEKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGV 177 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 214 ----SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 214 ----~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
...+.....+...++....++.++......|+++.+ -..........+...+...-...+.+++..++.|..
T Consensus 178 ~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~----~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 178 PGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIA----ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
No 494
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.07 E-value=5.6e+02 Score=25.43 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-------------------------------
Q 005743 161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI------------------------------- 209 (679)
Q Consensus 161 qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d------------------------------- 209 (679)
+..|+...+++..|...|++|+++...|..-+.++..+.+=-+.....+
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred -----hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhh
Q 005743 210 -----NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA 255 (679)
Q Consensus 210 -----~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~ 255 (679)
...+..+.-|...+.+|-+....|+....+|+.+...-+..+..+.
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.98 E-value=93 Score=25.58 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEWK 152 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEyK 152 (679)
|+.||..|..|+.+-+.||.-|..||
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=29.95 E-value=31 Score=35.86 Aligned_cols=19 Identities=42% Similarity=1.016 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCC--------------CCCCCCC
Q 005743 491 QAQIPQPPPLPR--------------PPPPPPA 509 (679)
Q Consensus 491 ~~gvpPppP~Pp--------------pPPPPPP 509 (679)
+..+.+=||||| .||||||
T Consensus 5 ~q~~S~~PpPPpY~k~yt~~ni~~~sAP~pP~p 37 (223)
T KOG0570|consen 5 PQTVSAYPPPPPYYKLYTDENINKGSAPPPPPP 37 (223)
T ss_pred cccccCCCcCChHHHHhhhccccCCCCCcccCC
No 497
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.91 E-value=9.5e+02 Score=28.03 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----H
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER----K 202 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q----~ 202 (679)
++.|...++.|+.= +-..+.++.++ +.+...+|+.-..++..+...+..=..+-..+++.+..+..+.++ -
T Consensus 250 ~~~l~~~~~~l~~~---~d~~~~~~~~~--l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 250 LEGLGEAQLALASV---IDGSLRELAEQ--VGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHh---hhHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCH
Q ss_pred hhhhhhhhccc---hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcC
Q 005743 203 NDNKNAINMGS---SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTN 277 (679)
Q Consensus 203 ee~~k~d~e~e---~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~N 277 (679)
++....-.+++ ..+...+.++.+|......++.+-.+++.+|.....++ -......+.++...|.-.+
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~-------a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA-------AERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCC
No 498
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=29.78 E-value=88 Score=29.94 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---HHHHHHHH
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK---VLELEREL 164 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~---I~ELqrqL 164 (679)
|.....|++.||..|++|.+|-..||.|=.-+|..-. +..|+.+|
T Consensus 62 mfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 62 MFAVREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhc
No 499
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.52 E-value=5.6e+02 Score=25.25 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----------------------------------------
Q 005743 162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER---------------------------------------- 201 (679)
Q Consensus 162 rqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q---------------------------------------- 201 (679)
.+|+...+++..|.++|..|+.....|.....++....+-
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Q ss_pred HhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhHHHh
Q 005743 202 KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLA----CKFSSMENQL 251 (679)
Q Consensus 202 ~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~----~KL~sAe~~~ 251 (679)
++.......-.+.+++.|+.-...|-....++..+-.+|. .|+..++.++
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~ 136 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQ 136 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.48 E-value=7.8e+02 Score=26.91 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhhchh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhh
Q 005743 128 DSLRSLLQESKERE-FKLQAELSEWKRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKND 204 (679)
Q Consensus 128 ~~Lr~~V~eLqERE-~kLE~ELlEyKEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee 204 (679)
..|+.++.-|..=+ .++...-|+-+=-|. .++.-.+-+...++......+|...+.|.+.+++.+++
T Consensus 149 ~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~---------- 218 (269)
T PF05278_consen 149 SDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQ---------- 218 (269)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 205 NKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 205 ~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.++.++++-..|.|+|....+|+++--.|...+..+.++.
T Consensus 219 -------~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 219 -------KEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!