Query 005743
Match_columns 679
No_of_seqs 217 out of 219
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 97.0 0.033 1.1E-06 54.9 17.2 164 121-288 6-181 (189)
2 2dfs_A Myosin-5A; myosin-V, in 96.6 0.011 3.6E-07 70.8 12.9 65 213-285 983-1047(1080)
3 1c1g_A Tropomyosin; contractIl 96.5 0.59 2E-05 43.7 23.2 28 124-151 12-39 (284)
4 1i84_S Smooth muscle myosin he 96.3 0.0086 2.9E-07 71.7 9.5 75 122-196 854-933 (1184)
5 3na7_A HP0958; flagellar bioge 96.2 0.46 1.6E-05 47.7 20.2 38 214-251 104-141 (256)
6 3na7_A HP0958; flagellar bioge 95.9 0.37 1.3E-05 48.4 17.6 39 214-252 90-128 (256)
7 1i84_S Smooth muscle myosin he 95.4 0.034 1.2E-06 66.7 9.4 33 119-151 858-890 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 95.2 0.11 3.7E-06 62.3 12.7 72 217-296 980-1051(1080)
9 3o0z_A RHO-associated protein 95.0 0.37 1.3E-05 46.7 13.5 95 159-253 38-136 (168)
10 3vkg_A Dynein heavy chain, cyt 94.9 1 3.4E-05 59.7 20.9 51 265-315 2074-2131(3245)
11 2v8f_C MDIA1, profilin IIA; al 94.5 0.019 6.5E-07 39.7 2.3 9 504-512 14-22 (26)
12 3iot_A Maltose-binding protein 93.8 0.011 3.9E-07 61.8 0.0 20 351-370 268-288 (449)
13 3oja_B Anopheles plasmodium-re 93.3 0.59 2E-05 50.8 12.5 39 213-251 543-581 (597)
14 2v71_A Nuclear distribution pr 93.2 3.1 0.00011 41.0 16.0 74 170-249 50-123 (189)
15 3vkg_A Dynein heavy chain, cyt 93.1 3.7 0.00013 54.5 21.1 52 114-168 1888-1947(3245)
16 3oja_B Anopheles plasmodium-re 92.3 1.5 5E-05 47.7 13.8 27 170-196 457-483 (597)
17 2fxo_A Myosin heavy chain, car 91.2 6.5 0.00022 35.9 14.8 84 157-240 22-109 (129)
18 2fxo_A Myosin heavy chain, car 91.2 3.8 0.00013 37.4 13.2 75 157-248 50-124 (129)
19 2z73_A Rhodopsin; visual pigme 90.4 0.051 1.7E-06 55.8 0.0 6 93-98 78-83 (448)
20 3oja_A Leucine-rich immune mol 88.8 3.3 0.00011 44.2 12.3 30 220-249 441-470 (487)
21 2ocy_A RAB guanine nucleotide 88.5 13 0.00045 35.6 14.9 31 170-200 45-75 (154)
22 3swk_A Vimentin; cytoskeleton, 87.1 3 0.0001 36.1 8.8 75 170-248 1-76 (86)
23 3swk_A Vimentin; cytoskeleton, 86.0 2.1 7.3E-05 37.0 7.3 81 222-302 1-83 (86)
24 3o0z_A RHO-associated protein 85.9 27 0.00091 33.9 17.5 129 123-251 11-152 (168)
25 2eqb_B RAB guanine nucleotide 85.0 7.3 0.00025 34.8 10.3 84 169-287 12-95 (97)
26 3s9g_A Protein hexim1; cyclin 84.0 3.2 0.00011 37.3 7.6 52 170-238 38-89 (104)
27 3qh9_A Liprin-beta-2; coiled-c 83.8 4 0.00014 35.4 7.9 56 121-178 22-77 (81)
28 2v66_B Nuclear distribution pr 83.7 2.9 0.0001 38.1 7.4 61 220-288 2-62 (111)
29 2zqm_A Prefoldin beta subunit 83.7 4.4 0.00015 35.3 8.4 41 161-201 5-45 (117)
30 3s4r_A Vimentin; alpha-helix, 83.6 10 0.00035 33.1 10.6 67 170-249 17-84 (93)
31 3ol1_A Vimentin; structural ge 83.2 17 0.00057 32.9 12.2 32 217-248 65-96 (119)
32 3u1c_A Tropomyosin alpha-1 cha 83.1 12 0.00041 33.0 11.0 72 171-252 4-75 (101)
33 3u59_A Tropomyosin beta chain; 82.4 13 0.00046 32.5 11.0 71 171-251 4-74 (101)
34 3i00_A HIP-I, huntingtin-inter 81.9 7.1 0.00024 35.9 9.3 60 168-240 14-80 (120)
35 2efr_A General control protein 81.1 39 0.0013 32.2 15.2 38 214-251 84-121 (155)
36 1go4_E MAD1 (mitotic arrest de 80.8 2.2 7.6E-05 38.3 5.4 33 169-201 12-44 (100)
37 3ol1_A Vimentin; structural ge 80.3 8.8 0.0003 34.7 9.3 86 219-304 18-105 (119)
38 2no2_A HIP-I, huntingtin-inter 79.9 18 0.00062 32.4 11.1 74 123-196 13-95 (107)
39 3q8t_A Beclin-1; autophagy, AT 79.8 31 0.0011 30.3 12.9 26 126-151 5-30 (96)
40 3hnw_A Uncharacterized protein 79.7 12 0.0004 35.0 10.1 19 170-188 111-129 (138)
41 3u1c_A Tropomyosin alpha-1 cha 78.7 29 0.001 30.5 11.9 68 157-234 32-99 (101)
42 3hnw_A Uncharacterized protein 78.4 10 0.00035 35.4 9.3 30 215-244 104-133 (138)
43 3tnu_A Keratin, type I cytoske 76.9 14 0.00047 33.7 9.6 83 214-304 45-128 (131)
44 1ic2_A Tropomyosin alpha chain 76.8 13 0.00045 31.3 8.8 70 173-252 3-72 (81)
45 3ghg_A Fibrinogen alpha chain; 76.8 30 0.001 38.9 13.8 25 121-145 60-84 (562)
46 1fxk_A Prefoldin; archaeal pro 75.9 15 0.00052 31.4 9.2 35 166-200 5-39 (107)
47 3s4r_A Vimentin; alpha-helix, 75.6 13 0.00044 32.5 8.6 36 119-154 10-45 (93)
48 3tnu_B Keratin, type II cytosk 74.6 15 0.0005 33.4 9.1 81 214-302 43-124 (129)
49 3i00_A HIP-I, huntingtin-inter 73.4 12 0.0004 34.4 8.1 68 120-194 10-79 (120)
50 1nxk_A MAP kinase-activated pr 72.9 0.81 2.8E-05 47.4 0.4 13 634-646 243-255 (400)
51 3a7p_A Autophagy protein 16; c 72.0 29 0.001 33.2 10.7 70 173-245 65-134 (152)
52 1go4_E MAD1 (mitotic arrest de 71.9 3.6 0.00012 36.9 4.2 74 216-289 14-96 (100)
53 2e7s_A RAB guanine nucleotide 70.8 4.3 0.00015 38.2 4.7 25 122-146 5-29 (135)
54 2jee_A YIIU; FTSZ, septum, coi 70.7 39 0.0013 29.3 10.2 36 159-194 10-45 (81)
55 2e7s_A RAB guanine nucleotide 70.2 6.7 0.00023 36.9 5.8 28 260-287 88-115 (135)
56 3a7p_A Autophagy protein 16; c 68.3 21 0.00071 34.2 8.8 60 124-192 67-126 (152)
57 3tnu_B Keratin, type II cytosk 68.2 31 0.001 31.3 9.7 66 168-233 35-101 (129)
58 2v66_B Nuclear distribution pr 67.6 73 0.0025 29.0 12.2 30 223-252 58-87 (111)
59 2ocy_A RAB guanine nucleotide 67.4 89 0.003 29.9 14.5 35 213-247 114-148 (154)
60 1l8d_A DNA double-strand break 67.0 37 0.0013 29.4 9.7 37 157-193 66-102 (112)
61 1gd2_E Transcription factor PA 66.8 7.8 0.00027 32.6 5.0 36 213-248 28-63 (70)
62 1deq_A Fibrinogen (alpha chain 65.6 22 0.00076 38.4 9.3 18 121-138 63-80 (390)
63 4i8n_A Tyrosine-protein phosph 64.6 1.5 5.2E-05 45.9 0.4 8 436-443 288-295 (354)
64 3mq9_A Bone marrow stromal ant 63.6 70 0.0024 33.8 12.9 24 214-237 443-466 (471)
65 3mq7_A Bone marrow stromal ant 62.3 86 0.003 29.0 11.3 24 213-236 84-107 (121)
66 3bas_A Myosin heavy chain, str 61.9 27 0.00091 30.1 7.6 35 157-191 23-57 (89)
67 2bnx_A Diaphanous protein homo 61.8 8 0.00027 41.0 5.2 42 271-315 209-251 (386)
68 3u59_A Tropomyosin beta chain; 61.2 83 0.0028 27.4 12.3 67 157-233 32-98 (101)
69 2v4h_A NF-kappa-B essential mo 59.7 75 0.0026 29.0 10.3 15 125-139 24-38 (110)
70 3eg5_B Protein diaphanous homo 59.6 9.3 0.00032 40.5 5.2 42 271-315 271-313 (383)
71 2i1j_A Moesin; FERM, coiled-co 59.5 19 0.00066 40.3 8.0 85 171-255 337-425 (575)
72 2v4h_A NF-kappa-B essential mo 58.9 85 0.0029 28.6 10.5 75 157-239 33-108 (110)
73 1f5n_A Interferon-induced guan 58.7 45 0.0015 37.7 10.7 15 181-195 517-531 (592)
74 2efr_A General control protein 58.6 1.3E+02 0.0044 28.7 18.7 39 157-195 44-82 (155)
75 2yy0_A C-MYC-binding protein; 57.5 11 0.00039 29.9 4.1 33 214-246 19-51 (53)
76 4h22_A Leucine-rich repeat fli 56.3 23 0.0008 31.9 6.4 43 152-194 40-83 (103)
77 4gkw_A Spindle assembly abnorm 56.2 1.4E+02 0.0047 28.3 18.7 70 126-195 12-86 (167)
78 1x79_B RAB GTPase binding effe 56.0 76 0.0026 29.0 9.8 13 231-243 94-106 (112)
79 3tnu_A Keratin, type I cytoske 55.9 87 0.003 28.4 10.4 64 124-193 37-101 (131)
80 1gk4_A Vimentin; intermediate 55.4 75 0.0026 26.9 9.2 76 222-305 2-78 (84)
81 2zqm_A Prefoldin beta subunit 54.2 1.1E+02 0.0036 26.4 10.5 38 157-194 72-109 (117)
82 3ghg_A Fibrinogen alpha chain; 54.1 42 0.0014 37.8 9.3 96 212-308 62-158 (562)
83 3a7o_A Autophagy protein 16; c 54.1 43 0.0015 28.5 7.2 38 157-194 34-71 (75)
84 2f31_A Diaphanous protein homo 54.0 8.1 0.00028 37.9 3.4 28 271-298 205-233 (233)
85 1m1j_B Fibrinogen beta chain; 53.8 1.4E+02 0.0046 33.1 13.2 26 214-239 168-193 (464)
86 1l8d_A DNA double-strand break 53.4 89 0.003 27.0 9.7 73 215-287 4-90 (112)
87 2pbd_V VAsp, vasodilator-stimu 53.4 5.1 0.00017 31.1 1.4 6 519-524 31-36 (43)
88 3nmd_A CGMP dependent protein 52.8 24 0.00081 30.0 5.5 31 150-180 34-65 (72)
89 3mq9_A Bone marrow stromal ant 52.4 1.8E+02 0.0062 30.6 13.7 15 214-228 457-471 (471)
90 2i1j_A Moesin; FERM, coiled-co 52.1 20 0.00067 40.2 6.5 19 124-142 299-317 (575)
91 1ic2_A Tropomyosin alpha chain 51.7 1.1E+02 0.0036 25.7 9.9 44 157-200 29-72 (81)
92 2ke4_A CDC42-interacting prote 51.7 50 0.0017 29.2 7.7 28 169-196 62-89 (98)
93 3ajm_A Programmed cell death p 51.5 19 0.00065 36.1 5.5 52 560-611 109-164 (213)
94 1gd2_E Transcription factor PA 51.3 11 0.00037 31.7 3.2 37 152-188 32-69 (70)
95 1x8y_A Lamin A/C; structural p 51.1 61 0.0021 27.7 8.0 17 125-141 3-19 (86)
96 3nmd_A CGMP dependent protein 50.9 38 0.0013 28.8 6.5 28 157-184 21-48 (72)
97 1gk4_A Vimentin; intermediate 50.1 1.2E+02 0.004 25.7 10.7 19 126-144 2-20 (84)
98 2q6q_A Spindle POLE BODY compo 50.0 84 0.0029 26.7 8.3 29 157-185 5-33 (74)
99 1deq_A Fibrinogen (alpha chain 49.8 70 0.0024 34.7 9.9 44 210-253 63-106 (390)
100 1kd8_A GABH AIV, GCN4 acid bas 47.9 24 0.00082 26.4 4.2 33 214-246 1-33 (36)
101 3oja_A Leucine-rich immune mol 47.7 2.3E+02 0.008 29.9 13.7 31 170-200 354-384 (487)
102 1ci6_A Transcription factor AT 46.6 44 0.0015 27.1 6.1 37 157-193 25-61 (63)
103 2lf0_A Uncharacterized protein 46.3 28 0.00095 32.2 5.3 49 237-292 12-60 (123)
104 3bas_A Myosin heavy chain, str 46.0 70 0.0024 27.4 7.6 38 214-251 28-65 (89)
105 2lw1_A ABC transporter ATP-bin 45.1 1E+02 0.0034 26.2 8.4 60 123-182 20-83 (89)
106 1m1j_C Fibrinogen gamma chain; 44.5 56 0.0019 35.5 8.3 25 170-194 92-116 (409)
107 2oqq_A Transcription factor HY 44.3 55 0.0019 25.3 5.8 33 158-190 6-38 (42)
108 3mq7_A Bone marrow stromal ant 44.1 1.3E+02 0.0043 27.9 9.3 18 230-247 73-90 (121)
109 1x8y_A Lamin A/C; structural p 43.6 54 0.0018 28.0 6.5 76 222-305 4-80 (86)
110 1kd8_B GABH BLL, GCN4 acid bas 43.4 33 0.0011 25.7 4.3 32 214-245 1-32 (36)
111 1fxk_A Prefoldin; archaeal pro 42.7 1.5E+02 0.0053 25.0 9.8 36 157-192 67-102 (107)
112 2h8h_A Proto-oncogene tyrosine 42.2 5.6 0.00019 43.0 0.2 12 598-609 222-233 (535)
113 1x79_B RAB GTPase binding effe 42.1 1.9E+02 0.0064 26.4 10.0 36 212-247 50-85 (112)
114 1dh3_A Transcription factor CR 41.7 26 0.00089 27.9 3.9 31 214-244 22-52 (55)
115 4gkw_A Spindle assembly abnorm 41.4 2.4E+02 0.0081 26.7 11.6 61 124-184 59-127 (167)
116 3icg_A Endoglucanase D; cellul 40.5 6.6 0.00022 42.7 0.4 17 124-140 82-98 (515)
117 1wt6_A Myotonin-protein kinase 40.2 1.5E+02 0.005 25.8 8.6 6 159-164 14-19 (81)
118 1p9i_A Cortexillin I/GCN4 hybr 39.9 30 0.001 24.6 3.5 27 172-198 2-28 (31)
119 1gmj_A ATPase inhibitor; coile 39.5 1.3E+02 0.0043 26.3 8.1 57 136-195 21-77 (84)
120 2akf_A Coronin-1A; coiled coil 39.1 39 0.0013 24.4 4.0 26 123-148 4-29 (32)
121 1jnm_A Proto-oncogene C-JUN; B 38.6 27 0.00093 28.0 3.7 35 157-191 24-58 (62)
122 1lwu_C Fibrinogen gamma chain; 38.5 39 0.0013 35.6 5.8 25 157-181 28-52 (323)
123 2eqb_B RAB guanine nucleotide 38.1 2.2E+02 0.0075 25.4 10.0 14 127-140 7-20 (97)
124 3q8t_A Beclin-1; autophagy, AT 37.6 1.4E+02 0.0049 26.0 8.4 38 214-251 11-48 (96)
125 3mov_A Lamin-B1; LMNB1, B-type 37.6 48 0.0016 29.1 5.3 75 222-304 13-88 (95)
126 1t2k_D Cyclic-AMP-dependent tr 37.5 63 0.0021 25.7 5.6 34 157-190 24-57 (61)
127 3m9b_A Proteasome-associated A 37.2 43 0.0015 34.4 5.7 68 119-194 18-93 (251)
128 3m91_A Proteasome-associated A 37.0 89 0.003 24.8 6.3 33 220-252 8-40 (51)
129 4evy_A Aminoglycoside N(6')-ac 37.0 8 0.00027 33.5 0.3 12 523-534 31-42 (166)
130 2js5_A Uncharacterized protein 36.5 1.4E+02 0.0047 25.3 7.7 59 125-183 3-66 (71)
131 2wt7_A Proto-oncogene protein 35.7 62 0.0021 26.1 5.4 24 170-193 24-47 (63)
132 2dgc_A Protein (GCN4); basic d 35.5 37 0.0013 27.7 4.0 31 214-244 30-60 (63)
133 2yy0_A C-MYC-binding protein; 34.5 50 0.0017 26.2 4.5 31 221-251 19-49 (53)
134 3m48_A General control protein 34.3 44 0.0015 24.6 3.7 27 216-242 2-28 (33)
135 1jnm_A Proto-oncogene C-JUN; B 32.9 48 0.0017 26.5 4.3 26 215-240 23-48 (62)
136 1dh3_A Transcription factor CR 32.8 54 0.0018 26.0 4.5 28 169-196 22-49 (55)
137 1m1j_A Fibrinogen alpha subuni 32.4 1.8E+02 0.0062 32.3 9.8 67 129-195 90-158 (491)
138 2h57_A ADP-ribosylation factor 32.2 10 0.00034 34.1 0.1 9 530-538 37-45 (190)
139 2oxj_A Hybrid alpha/beta pepti 31.6 66 0.0023 23.8 4.3 29 215-243 2-30 (34)
140 4emc_A Monopolin complex subun 31.2 1.4E+02 0.0047 29.6 7.9 37 157-193 22-58 (190)
141 2p22_C Protein SRN2; endosome, 30.4 2.6E+02 0.0089 27.3 9.8 13 292-305 157-169 (192)
142 2jee_A YIIU; FTSZ, septum, coi 29.7 2.7E+02 0.0094 24.0 10.4 28 127-154 8-35 (81)
143 1t2k_D Cyclic-AMP-dependent tr 29.6 84 0.0029 25.0 5.2 29 213-241 28-56 (61)
144 1zxa_A CGMP-dependent protein 29.4 39 0.0013 28.3 3.2 28 152-179 21-49 (67)
145 3cl3_D NF-kappa-B essential mo 29.3 70 0.0024 29.9 5.2 58 129-186 3-72 (130)
146 1m1j_B Fibrinogen beta chain; 29.0 2.1E+02 0.0073 31.6 9.8 17 212-228 180-196 (464)
147 2hy6_A General control protein 28.9 72 0.0025 23.6 4.1 29 214-242 1-29 (34)
148 3ehr_A Osteoclast-stimulating 28.8 12 0.00041 34.4 0.0 10 582-591 85-94 (222)
149 1uii_A Geminin; human, DNA rep 28.6 1.4E+02 0.0046 26.1 6.5 23 170-192 54-76 (83)
150 3efg_A Protein SLYX homolog; x 28.4 1.3E+02 0.0043 25.6 6.3 36 157-192 16-51 (78)
151 3u06_A Protein claret segregat 28.0 1.2E+02 0.0041 32.7 7.6 26 169-194 31-56 (412)
152 3jsv_C NF-kappa-B essential mo 27.3 2.7E+02 0.0093 24.7 8.3 19 165-183 19-37 (94)
153 1deb_A APC protein, adenomatou 27.2 2.4E+02 0.0083 22.6 7.4 47 171-234 5-51 (54)
154 2zdi_C Prefoldin subunit alpha 27.0 1.2E+02 0.004 27.9 6.4 41 160-200 7-50 (151)
155 3okq_A BUD site selection prot 27.0 1.6E+02 0.0054 27.9 7.2 75 574-649 39-127 (141)
156 3qh9_A Liprin-beta-2; coiled-c 26.7 3.2E+02 0.011 23.8 8.8 57 128-193 22-78 (81)
157 2dgc_A Protein (GCN4); basic d 26.5 70 0.0024 26.0 4.2 29 169-197 30-58 (63)
158 2wt7_A Proto-oncogene protein 26.5 1.1E+02 0.0037 24.6 5.3 26 214-239 23-48 (63)
159 2pmy_A RAS and EF-hand domain- 26.0 14 0.00048 29.9 -0.0 11 525-535 27-37 (91)
160 3cvf_A Homer-3, homer protein 25.7 1.6E+02 0.0053 25.4 6.4 66 218-302 3-68 (79)
161 1s1c_X RHO-associated, coiled- 25.5 1.7E+02 0.0059 24.7 6.5 29 225-253 3-31 (71)
162 4abm_A Charged multivesicular 25.5 2.3E+02 0.0077 24.0 7.3 27 125-151 6-32 (79)
163 1uii_A Geminin; human, DNA rep 25.3 1.5E+02 0.0053 25.8 6.3 31 170-200 47-77 (83)
164 1m1j_C Fibrinogen gamma chain; 25.1 3.1E+02 0.011 29.7 10.1 19 175-193 83-101 (409)
165 3jsv_C NF-kappa-B essential mo 24.3 3.8E+02 0.013 23.8 8.7 16 233-248 66-81 (94)
166 4etp_A Kinesin-like protein KA 24.1 1.2E+02 0.0042 32.3 6.8 14 172-185 6-19 (403)
167 1hjb_A Ccaat/enhancer binding 23.9 1.1E+02 0.0037 26.7 5.1 34 211-244 40-73 (87)
168 1fxk_C Protein (prefoldin); ar 23.6 3.8E+02 0.013 23.7 9.9 37 214-250 88-124 (133)
169 2j76_E EIF-4B, EIF4B, eukaryot 23.6 18 0.00061 30.1 0.2 9 525-533 34-42 (100)
170 2zuo_A MVP, major vault protei 23.3 1E+03 0.034 28.4 16.1 62 125-189 649-717 (861)
171 4f61_I Stathmin-like domain R4 23.2 6.1E+02 0.021 25.9 19.6 155 127-300 44-220 (240)
172 2h57_A ADP-ribosylation factor 23.2 18 0.00062 32.4 0.2 7 667-673 175-181 (190)
173 4dk0_A Putative MACA; alpha-ha 23.1 2.5E+02 0.0085 28.3 8.5 33 118-150 63-95 (369)
174 1a93_B MAX protein, coiled coi 22.9 87 0.003 23.2 3.6 25 216-240 9-33 (34)
175 2wt7_B Transcription factor MA 22.8 3.9E+02 0.013 23.4 8.7 32 214-245 55-86 (90)
176 1eq1_A Apolp-III, apolipophori 22.7 64 0.0022 30.7 3.7 83 210-299 74-156 (166)
177 1uix_A RHO-associated kinase; 22.7 3.5E+02 0.012 22.9 8.0 40 161-200 3-42 (71)
178 3csx_A Putative uncharacterize 22.6 2.2E+02 0.0074 24.7 6.6 59 125-183 15-78 (81)
179 2no2_A HIP-I, huntingtin-inter 22.5 4.1E+02 0.014 23.6 12.5 30 221-250 68-97 (107)
180 2la6_A RNA-binding protein FUS 22.1 40 0.0014 27.6 2.0 9 525-533 28-36 (99)
181 3m9b_A Proteasome-associated A 22.1 57 0.0019 33.5 3.5 24 265-288 58-81 (251)
182 1ci6_A Transcription factor AT 22.0 1.4E+02 0.005 24.0 5.3 28 213-240 29-56 (63)
183 2wt7_B Transcription factor MA 21.8 1.3E+02 0.0046 26.3 5.3 39 216-254 50-88 (90)
184 2iwi_A Serine/threonine-protei 21.5 20 0.00067 34.7 0.0 13 634-646 219-231 (312)
185 1ik9_A DNA repair protein XRCC 21.5 4.5E+02 0.015 26.0 9.7 24 169-192 172-195 (213)
186 2zxx_A Geminin; coiled-coil, c 21.2 2.3E+02 0.0077 24.5 6.5 25 170-194 42-66 (79)
187 2qup_A BH1478 protein; structu 21.0 5E+02 0.017 24.0 11.2 87 569-655 25-119 (145)
188 3llu_A RAS-related GTP-binding 20.6 21 0.00072 32.4 0.0 6 607-612 116-121 (196)
189 1nkp_B MAX protein, MYC proto- 20.5 1E+02 0.0035 25.7 4.2 11 221-231 61-71 (83)
190 2xdj_A Uncharacterized protein 20.5 3.8E+02 0.013 23.0 7.8 40 211-250 24-63 (83)
191 2wq1_A General control protein 20.3 1.5E+02 0.005 21.9 4.3 27 215-241 1-27 (33)
192 1hjb_A Ccaat/enhancer binding 20.3 1.9E+02 0.0066 25.1 6.0 40 214-253 36-75 (87)
193 3c3f_A Alpha/beta peptide with 20.3 1.4E+02 0.0049 22.0 4.3 27 215-241 2-28 (34)
194 2r2v_A GCN4 leucine zipper; co 20.2 1.4E+02 0.0049 22.1 4.3 28 215-242 2-29 (34)
195 3viq_B Mating-type switching p 20.0 1.6E+02 0.0054 25.7 5.3 77 221-297 1-77 (85)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.97 E-value=0.033 Score=54.88 Aligned_cols=164 Identities=20% Similarity=0.167 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
.....||...+.....++.+-.-|+.+|.+| +|.|+ ||+.+|......+..|..++..|..|...+.+.+....
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~--ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEA--ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999 44443 44455544444444555555555444444433322111
Q ss_pred HHHHHHhhhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhcc---chhH--HHHHHHH
Q 005743 197 VILERKNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA---SESD--IISKIKA 268 (679)
Q Consensus 197 ~~~~Q~ee~~k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~---~Es~--~Va~~~e 268 (679)
.-.. .....-+.++ ......|-..+.+|-..|.+|+-..|....-|+..+++++..-.. =|++ .-..+++
T Consensus 84 ~e~~--~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~ 161 (189)
T 2v71_A 84 AQSY--KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLV 161 (189)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000001111 234455555566666667777777777666666666655432110 0111 1112334
Q ss_pred HHHHhhhcChHHHHHHHHHh
Q 005743 269 EALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 269 E~~~LR~~Ne~L~~QlE~l~ 288 (679)
++.+||.+-.||...+.+++
T Consensus 162 ~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 162 SVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp CC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555544
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.62 E-value=0.011 Score=70.76 Aligned_cols=65 Identities=18% Similarity=0.371 Sum_probs=43.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE 285 (679)
+..+..|+.|+.+|+.....+..|+.+|..+++..+..+. +.|+.+++|...||..-++|..++.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~--------~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE--------QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999888777766653221 3455555565555555555553333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.46 E-value=0.59 Score=43.71 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
..+|+.+...+..|+.+-..|+.++..+
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444444444444333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.29 E-value=0.0086 Score=71.74 Aligned_cols=75 Identities=27% Similarity=0.190 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
....||..|+..+..|+++-..++.++.++ ...+. +.+++.+|.....++..+...+..|+.+...|++++.++.
T Consensus 854 ~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933 (1184)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555555444 11112 4444444444444444445555555555555555554443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.22 E-value=0.46 Score=47.68 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.++..||.++.|+-.....++.+..++..+++..+..+
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444444444444444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.86 E-value=0.37 Score=48.37 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
+.+..|..|+.-+.+....|+.+..++..+++..+..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777777766665543
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.38 E-value=0.034 Score=66.66 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=18.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
+...+..+|..|+..+..++.....|+.++..+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555544555444444
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.20 E-value=0.11 Score=62.28 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHH
Q 005743 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVE 296 (679)
Q Consensus 217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvE 296 (679)
..++.+|.+|...+.+|..+...+...++..|..+..+ -..+++.++.|+.+|..|..|++.+.......-+
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~--------~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY--------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433222 1256677888888888888888887744444333
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.00 E-value=0.37 Score=46.72 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=68.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhh----hhccchhhhhHHHHHHHHHHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA----INMGSSSSQNLEMEVVELRRLNKELQ 234 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~----d~e~e~~l~~LE~EV~ELRR~NkeLQ 234 (679)
|+...+.....-+..|.-++..|+.....|+.+++.+-....|+...... -.+++.++..|..|+..+|-....++
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334555666677777777777777777777777765543322 24557899999999999999999999
Q ss_pred HHHHhhhhhhhhhHHHhhh
Q 005743 235 MEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 235 ~EKreL~~KL~sAe~~~~~ 253 (679)
.+++.|..|+..-|...++
T Consensus 118 ~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999888855443
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.86 E-value=1 Score=59.66 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhhchHHH-------HHHHHHHHHHHHHhhhhh
Q 005743 265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE-------LAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEE-------LvylRwiNacLR~EL~d~ 315 (679)
.+..-++.|-.+++.=..+++.|......-+.. +.|+.-.+.-.|.++.+.
T Consensus 2074 rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~ 2131 (3245)
T 3vkg_A 2074 RSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRK 2131 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344555566666666666666666665555444 226544454556665443
No 11
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=94.53 E-value=0.019 Score=39.71 Aligned_cols=9 Identities=67% Similarity=1.612 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 005743 504 PPPPPAPKF 512 (679)
Q Consensus 504 PPPPPPP~~ 512 (679)
|||||+|+.
T Consensus 14 PpPpplPg~ 22 (26)
T 2v8f_C 14 PPPPPLPGX 22 (26)
T ss_pred CCCCCCCCc
Confidence 334444443
No 12
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=93.75 E-value=0.011 Score=61.76 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=12.9
Q ss_pred cCCcchhHHHHhhc-CCCccc
Q 005743 351 SGGRRLSFIKKFKK-WPIASE 370 (679)
Q Consensus 351 s~sKk~~li~KLKk-W~~~ke 370 (679)
+.||.+....++=+ |.-+.+
T Consensus 268 ~~s~~~e~A~~fl~~~l~s~e 288 (449)
T 3iot_A 268 AASPNKELAKEFLENYLLTDE 288 (449)
T ss_dssp TTCSCHHHHHHHHHHTTSSHH
T ss_pred CCCCCHHHHHHHHHHHhcCHH
Confidence 34677777777765 765544
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.34 E-value=0.59 Score=50.77 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=25.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
++.+.+||....+.++...+|+.|+..+..++...+..+
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666677777777777777777666666665544
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.17 E-value=3.1 Score=41.02 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
+|.-+..++.-|+..+.+|..++-.+-.=..+ ...+....+..|+.|+..||..+..|+...|+|-+.-|..|.
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~------~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEH------QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45555555555555555555444333211110 001223456777777777777777777777777777776664
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.11 E-value=3.7 Score=54.50 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=23.5
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh---HHHHHHHHHHhH
Q 005743 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK---VLELERELEAKK 168 (679)
Q Consensus 114 r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----KEQE~---I~ELqrqL~~k~ 168 (679)
|++...+..+-.=|...+.+ |.++...++.+..+| |=.|+ |.+||.+|..+.
T Consensus 1888 R~~yvTP~syLeli~~y~~l---l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1888 RQNYVTPRHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444333 344444444444444 22232 666655555443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.30 E-value=1.5 Score=47.70 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
++..+...|..|+++....+..+....
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~ 483 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLH 483 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444333
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.21 E-value=6.5 Score=35.86 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----HhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER----KNDNKNAINMGSSSSQNLEMEVVELRRLNKE 232 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q----~ee~~k~d~e~e~~l~~LE~EV~ELRR~Nke 232 (679)
+..|+..|.........|..+...|..+.+.|+.++..-...... .....++..+++..+++|+..+.+....|..
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~ 101 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666777777777777776543333221 1222333444556666666666666666666
Q ss_pred HHHHHHhh
Q 005743 233 LQMEKRNL 240 (679)
Q Consensus 233 LQ~EKreL 240 (679)
|+.+|+.|
T Consensus 102 L~~~kkkl 109 (129)
T 2fxo_A 102 LTAKKRKL 109 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.16 E-value=3.8 Score=37.44 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
...|+.+|+.....+....-....|.+....|+..+.+. +.++.+.|....+|-..-+.|+.+
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-----------------~~rleeeee~~~~L~~~kkkle~e 112 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-----------------NKRLEDEEEMNAELTAKKRKLEDE 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444444444444444433 333444444444444444444444
Q ss_pred HHhhhhhhhhhH
Q 005743 237 KRNLACKFSSME 248 (679)
Q Consensus 237 KreL~~KL~sAe 248 (679)
..+|...|+..+
T Consensus 113 ~~~Lk~~led~e 124 (129)
T 2fxo_A 113 CSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 19
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=90.41 E-value=0.051 Score=55.81 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.6
Q ss_pred hccccc
Q 005743 93 IGDLAC 98 (679)
Q Consensus 93 ~~dl~~ 98 (679)
+.||+.
T Consensus 78 iaDll~ 83 (448)
T 2z73_A 78 FSDFTF 83 (448)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.77 E-value=3.3 Score=44.21 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743 220 EMEVVELRRLNKELQMEKRNLACKFSSMEN 249 (679)
Q Consensus 220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~ 249 (679)
-.++..|++.|.+|+.+.+++-.+++.|.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 334445555555555555555555555543
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.53 E-value=13 Score=35.56 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
++..|...+.....+.++|.+.+.+-...+.
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~ 75 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRT 75 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666555554444433
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.13 E-value=3 Score=36.06 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccc-hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGS-SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e-~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
||.-|..+|..+..++.+|.-++-........ .+.+.|-| ..-..+|.+++-||+-..++-+-+-+|-.|+++..
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~ed----fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMR----LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777666655444432 01111111 23368999999999999999999999888777664
No 23
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.97 E-value=2.1 Score=36.96 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHH--HHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDII--SKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA 299 (679)
Q Consensus 222 EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~V--a~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv 299 (679)
|+.+||+....+..+|.-|...++.++..+.-+-.--|+++. ..++.+...||..=+++.-.--.|+..=++-.+||.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999888888888766655444455433 356667777776665555444455555555566777
Q ss_pred HHH
Q 005743 300 YLR 302 (679)
Q Consensus 300 ylR 302 (679)
|||
T Consensus 81 fLk 83 (86)
T 3swk_A 81 FLK 83 (86)
T ss_dssp HHT
T ss_pred HHh
Confidence 754
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.87 E-value=27 Score=33.93 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
++..|+-+...++.--+-..+|--...|+ .-+|. ++||+-.+..-...-+.|.+.+..||+....=........-
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555555555444455 55566 78888777766666666666666666553322221111111
Q ss_pred HHHH-Hhhhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhHHHh
Q 005743 198 ILER-KNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLA----CKFSSMENQL 251 (679)
Q Consensus 198 ~~~Q-~ee~~k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~----~KL~sAe~~~ 251 (679)
.... +....--..|+ ..++..++.+...|--....|+.++..+- .+|.+++..+
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~ 152 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1110 00000011122 26667777777777777777777777776 6677777655
No 25
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.00 E-value=7.3 Score=34.82 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.++.-|..++...+.+..+|++.+.+-...+. .++.....++.|+++|-.+.
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~----------~aE~~~~~ie~ElEeLTasL------------------ 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRT----------KAEEEADKLNKEVEDLTASL------------------ 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH------------------
Confidence 34444445555555555555554443322222 23455566666766654332
Q ss_pred HHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 249 NQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 249 ~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
+. --+.||+.++.+...+-..|+.|..||..-
T Consensus 64 -----Fe--EAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 64 -----FD--EANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 135699999999998999999999888653
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.03 E-value=3.2 Score=37.30 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR 238 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKr 238 (679)
+-..|...++.|+.|+++|+.+-... -.++++|+.||..||+.|..|-.|+.
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~-----------------~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRL-----------------DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888899999999998764332 35678999999999999999988764
No 27
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=83.83 E-value=4 Score=35.40 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRV 178 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI 178 (679)
.++-+||..||..|.+|+....--|-.|.--| +.|..||.+|..+.++|..|.-++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK--~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATK--AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 36788999999888887765544433333323 115566666666666655555443
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.72 E-value=2.9 Score=38.09 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
|.-..+|+..|..|.+|..++..||..+....++ .+..++.|++.||..|+.|...|..|.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--------~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK--------QVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999998765543 244788999999999999988776664
No 29
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=83.68 E-value=4.4 Score=35.34 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 161 qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
+.+++...++.-.|.+++..|..+...|+.++.++..+.+.
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~e 45 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDE 45 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777777777777777777777777766663
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.56 E-value=10 Score=33.10 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQN-LEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~-LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
.+--+=-+|-.||.+|..|+.++..+.. + .. ..+.. .|.++.+||+....+..+|..|...++..+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~---~--~~--------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG---Q--GK--------SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---c--cC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888888888887755431 1 11 12223 588999999999999999998887777654
Q ss_pred H
Q 005743 249 N 249 (679)
Q Consensus 249 ~ 249 (679)
.
T Consensus 84 ~ 84 (93)
T 3s4r_A 84 E 84 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.15 E-value=17 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 217 QNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
..+|.+++-||+-..+.-.-+-+|-.++++..
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 34567777777777666666666555555443
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.10 E-value=12 Score=33.00 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
.+.++.++..|+.+.....+.+.++-.-.++ .+.+...+|.||..|.+.+..|+.+...+..+|..|..+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~----------~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKA----------AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877777666554433321 235566788888888888888888888877788777665
Q ss_pred hh
Q 005743 251 LT 252 (679)
Q Consensus 251 ~~ 252 (679)
+.
T Consensus 74 Le 75 (101)
T 3u1c_A 74 LL 75 (101)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.37 E-value=13 Score=32.48 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
.+..+.++..|+.+.....+.+.++-.-.++ .+.+...+|.||..|.+.+..|+.+......+|..+...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~----------~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQ----------AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888777776666554433332 234556677888888888888888888777777777655
Q ss_pred h
Q 005743 251 L 251 (679)
Q Consensus 251 ~ 251 (679)
+
T Consensus 74 L 74 (101)
T 3u59_A 74 L 74 (101)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.88 E-value=7.1 Score=35.86 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHH-------HHHHHHHHHhh
Q 005743 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRL-------NKELQMEKRNL 240 (679)
Q Consensus 168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~-------NkeLQ~EKreL 240 (679)
...|+.|++.|..|..+.+++..+.. .++. .+..++..||.|..+=|.. |..|.+|..+|
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q---~~v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQ---RVVL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888777776643322 2221 2345667777777776655 44455555544
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.06 E-value=39 Score=32.24 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.++++.|..+..--|....||.+..+|-.+|..+...+
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555555555444443
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.76 E-value=2.2 Score=38.25 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
.++..|..+|.+|+.|+.+|..++..+-.-.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999988777765
No 37
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.34 E-value=8.8 Score=34.74 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHH--HHHHHHHHHhhhcChHHHHHHHHHhhhhhchHH
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDII--SKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVE 296 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~V--a~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvE 296 (679)
.|.++.+||+....+..+|..|...++.++..+.-+-.--|.++- ..++.+...||..=++..-.--.|+..-++-.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888888877655544433333322 233444444443322222222222233333345
Q ss_pred HHHHHHHH
Q 005743 297 ELAYLRWV 304 (679)
Q Consensus 297 ELvylRwi 304 (679)
||.++|-+
T Consensus 98 El~FLKk~ 105 (119)
T 3ol1_A 98 EIAFLKKL 105 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 38
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=79.94 E-value=18 Score=32.44 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSEW--------KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy--------KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
..-.+...+..-.++......|+.++.+. ++|-. |..|+++|..+..+|..|+..+..++.++..+...+.
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~ 92 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666664 44444 8999999999999999999999999999888887775
Q ss_pred HHH
Q 005743 194 ALS 196 (679)
Q Consensus 194 e~~ 196 (679)
+..
T Consensus 93 ~l~ 95 (107)
T 2no2_A 93 ELE 95 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 39
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.81 E-value=31 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
+++.|..-++.|+..|..|-.+|.+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~l 30 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDV 30 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777776666666655
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.69 E-value=12 Score=34.97 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhHHHhhhH
Q 005743 170 ENDEIVRRVGMLEDEKTSL 188 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rL 188 (679)
++..|+.++..|+.+..+|
T Consensus 111 e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.68 E-value=29 Score=30.50 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ 234 (679)
+++++......-.+|.-|..+|..|+.+-.++++++.+.....+ +.++...+-|.+|.-|-|.+--|+
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe----------e~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL----------FAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555567888888888888888887777765543322 123455666777777766665554
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.37 E-value=10 Score=35.35 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL 244 (679)
.+.+++.++.+|++.+.+||.++..|-..|
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777776664433
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.93 E-value=14 Score=33.72 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
..++.|+.|+.-|+..+..|+....++-.+++.+-..+.. .+..++++...+|..-...+.+...|..-+-.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~--------~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQE--------MIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777666666554433322 23345555555555555666666666666655
Q ss_pred hHHHHH-HHHHH
Q 005743 294 EVEELA-YLRWV 304 (679)
Q Consensus 294 dvEELv-ylRwi 304 (679)
---|+. |++.+
T Consensus 117 Ld~EIatYRkLL 128 (131)
T 3tnu_A 117 LEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhH
Confidence 444554 65543
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.83 E-value=13 Score=31.32 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=50.4
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 173 ~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
.++.++..|+.+.....+.+.++..-.++ .+++...+|.||..|.+.+..|+.+....-.+|..|+.++.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~----------~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKA----------AEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777776666666554433321 23566778889999999999999998888888888876653
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.79 E-value=30 Score=38.92 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESKEREFKLQ 145 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLqERE~kLE 145 (679)
.|+..-|+.||+.|..++.-...-+
T Consensus 60 rDltkrINELKnqLEdlsKnsKdse 84 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHH
Confidence 3456778888888888755444444
No 46
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=75.92 E-value=15 Score=31.43 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=20.4
Q ss_pred HhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 166 AKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 166 ~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
...++.-.|.+++..+..+.+.|+.++.++..+..
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666655555
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.59 E-value=13 Score=32.51 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005743 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRN 154 (679)
Q Consensus 119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ 154 (679)
.|.++..-+...=..|+.|++.-..|+.++..++.+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555666667888998888898888777443
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.63 E-value=15 Score=33.40 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=40.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~ 293 (679)
..++.|+.|+..|+..+..|+....++-.+++.+-..+.. .+..++++...+|..-...+.+...|..-+-.
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~--------~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARN--------KLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665555555554443322211 23344445554444444555555555555544
Q ss_pred hHHHHH-HHH
Q 005743 294 EVEELA-YLR 302 (679)
Q Consensus 294 dvEELv-ylR 302 (679)
---|+. |++
T Consensus 115 Ld~EIatYRk 124 (129)
T 3tnu_B 115 LDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 334443 544
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.36 E-value=12 Score=34.40 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=37.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+++-+..|++|+.-|..|+..-.+|-.|-..| -.... |.+|+.+|.... ..+--...+++.|..++..
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r-------~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ-------HLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34556789999999988887766665544444 22222 555554444433 3333333444444444443
No 50
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=72.89 E-value=0.81 Score=47.38 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=6.6
Q ss_pred chhHHHHHHhhhh
Q 005743 634 KADTLREAAFGYR 646 (679)
Q Consensus 634 K~dalReAA~lY~ 646 (679)
+.|.+--...+|.
T Consensus 243 ~~DiwslG~il~e 255 (400)
T 1nxk_A 243 SCDMWSLGVIMYI 255 (400)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 4555555555553
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.04 E-value=29 Score=33.19 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 173 ~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
++.+.|..|+.+...|+..+.++....+.+.... ..+...+..|-.++..|...+..||.|+.+|..|+=
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~---e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNT---ERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666665555554443332222110000 011233445555556666666666666666666653
No 52
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.94 E-value=3.6 Score=36.92 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh---------hHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHH
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSS---------MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG 286 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s---------Ae~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~ 286 (679)
+..|--+|.+|++.|.+|-.++..|-.+|.. .-.++--+.+.+-+......++++..|+.+++.|...|..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544 1112222233334443346788888888888888877766
Q ss_pred Hhh
Q 005743 287 LQM 289 (679)
Q Consensus 287 l~~ 289 (679)
++.
T Consensus 94 lEe 96 (100)
T 1go4_E 94 MER 96 (100)
T ss_dssp CC-
T ss_pred Hhc
Confidence 554
No 53
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.79 E-value=4.3 Score=38.17 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQA 146 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ 146 (679)
+++.+|..+|..+...+.+...|+.
T Consensus 5 ~LEd~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 5 SLEEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777666666665554
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.72 E-value=39 Score=29.30 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
.|+..++..-..|..|...|.-|..+|..|..++.+
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444456666777777777666666655543
No 55
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.24 E-value=6.7 Score=36.89 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743 260 SDIISKIKAEALVLRHTNEDLSKQVEGL 287 (679)
Q Consensus 260 s~~Va~~~eE~~~LR~~Ne~L~~QlE~l 287 (679)
+.||+.++.+...+...|+.|..|+..-
T Consensus 88 N~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 88 NNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777776666666666665443
No 56
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.27 E-value=21 Score=34.22 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
...|..|+..+..|+.+-..|+.+|.+ -.+-++.-..|+..|+.+.+.++.+..+|+++-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~e---------K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIAL---------KNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444332 222233333455555555555555555555443
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.16 E-value=31 Score=31.30 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHh-hhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 005743 168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKN-DNKNAINMGSSSSQNLEMEVVELRRLNKEL 233 (679)
Q Consensus 168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~e-e~~k~d~e~e~~l~~LE~EV~ELRR~NkeL 233 (679)
..||..|+..|.+|+.|...|..+.+.+-.....-+ .....-......+..||.++..+|......
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 346666666666666666666555544433322111 000000123466777787777766654443
No 58
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.65 E-value=73 Score=28.98 Aligned_cols=30 Identities=30% Similarity=0.456 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 223 VVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 223 V~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
+.+|-..|.+|+-..|.-+.=|...|++++
T Consensus 58 iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 58 VRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 333444566666666665555555555543
No 59
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.39 E-value=89 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=21.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
+.+...|+....|-+.....||.|..+|..-+..+
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666555444
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.97 E-value=37 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
+.+.+.++..-..++..|..++..|+.+...|+.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666667777777777777777777776665
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.84 E-value=7.8 Score=32.59 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=29.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe 248 (679)
+..+++||..|.+|...+..|+.|+..|...+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999988888877776666554
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.56 E-value=22 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHHHHHH
Q 005743 121 RDLFLELDSLRSLLQESK 138 (679)
Q Consensus 121 ~~~~~EI~~Lr~~V~eLq 138 (679)
.++...|++|+..|..++
T Consensus 63 r~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQ 80 (390)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344556666666665554
No 63
>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}
Probab=64.60 E-value=1.5 Score=45.92 Aligned_cols=8 Identities=0% Similarity=-0.076 Sum_probs=3.4
Q ss_pred hcccCCCC
Q 005743 436 SSQKYDFD 443 (679)
Q Consensus 436 ~~~ky~~~ 443 (679)
..+++...
T Consensus 288 R~qR~~mV 295 (354)
T 4i8n_A 288 RKFRMGLI 295 (354)
T ss_dssp HTTSTTCS
T ss_pred HHhCcccc
Confidence 34444444
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.65 E-value=70 Score=33.81 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEK 237 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EK 237 (679)
+++++||.||.+|-...+++..|-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666554444444333
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.33 E-value=86 Score=28.96 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=19.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHH
Q 005743 213 SSSSQNLEMEVVELRRLNKELQME 236 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~E 236 (679)
.+.|++.+.||++||+.|..|+--
T Consensus 84 nq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 84 NHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhhhhH
Confidence 478999999999999988776643
No 66
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.90 E-value=27 Score=30.10 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q 191 (679)
+..|+..|.........|..+...|..+.+.|+.|
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555566666666666666
No 67
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=61.83 E-value=8 Score=41.02 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHhhh-cChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 271 LVLRH-TNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 271 ~~LR~-~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
..||. .+++|..|+++|.++++.|.+||.. |+.+ ++.|+.+.
T Consensus 209 ~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~-r~~~--i~~d~~d~ 251 (386)
T 2bnx_A 209 QELREIENEDMKVQLCVFDEQGDEDFFDLKG-RLDD--IRMEMDDF 251 (386)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHCCCH
T ss_pred HHHhccCChhHHHHHHHHHHHHHHHHHHHHh-hhhc--CCCCCCCH
Confidence 44555 8999999999999999999999998 7877 55666554
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.21 E-value=83 Score=27.39 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeL 233 (679)
+++++......-.+|.-|+.+|..|+.+-...++.+.....-.+. .++...+-|.+|.-|-|.+--|
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~----------~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ----------AEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444577777777777777777777766654432221 1244455666666666555443
No 69
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.73 E-value=75 Score=28.98 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 005743 125 LELDSLRSLLQESKE 139 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqE 139 (679)
.||+.|...+...++
T Consensus 24 ~ei~~L~~~L~~AEe 38 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEE 38 (110)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 377777776665544
No 70
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=59.57 E-value=9.3 Score=40.54 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHhhh-cChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 271 LVLRH-TNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 271 ~~LR~-~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
..||. .+++|.+|++.|.+++++|.+||.. |+.+ ++-|+.++
T Consensus 271 ~~lr~~~~~~L~~Qi~~fe~~~~eD~~el~~-r~~~--~~~d~~d~ 313 (383)
T 3eg5_B 271 QELREIENEDMKVQLCVFDEQGDEDFFDLKG-RLDD--IRMEMDDF 313 (383)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHCCSH
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHhHHHHHh-hccc--cCcCcCCH
Confidence 34554 5999999999999999999999998 8877 45566554
No 71
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.45 E-value=19 Score=40.26 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH-Hhhhhhhh---hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER-KNDNKNAI---NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q-~ee~~k~d---~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s 246 (679)
...|..++..+|++..+.++.+.+....... ++++...+ ..+++.-.++|.+...|+.....-..|+..|..++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455566666777777666666544332221 11111111 2235777888888888888888888888899999888
Q ss_pred hHHHhhhhh
Q 005743 247 MENQLTSLA 255 (679)
Q Consensus 247 Ae~~~~~~~ 255 (679)
++..+..+.
T Consensus 417 ~~~~~~~~~ 425 (575)
T 2i1j_A 417 KQEEVSRIQ 425 (575)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 887766543
No 72
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.87 E-value=85 Score=28.62 Aligned_cols=75 Identities=17% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccc-hhhhhHHHHHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGS-SSSQNLEMEVVELRRLNKELQM 235 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e-~~l~~LE~EV~ELRR~NkeLQ~ 235 (679)
+...+..|..+..+++.|+.+|..+++..++ ..+.+++-+.=+.||+.| ..=..+-.|..+|...+..||.
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~--------I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKIVMET--------VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 3344555556666777777777766553322 112222222233444444 2222344445555555555555
Q ss_pred HHHh
Q 005743 236 EKRN 239 (679)
Q Consensus 236 EKre 239 (679)
++..
T Consensus 105 q~~~ 108 (110)
T 2v4h_A 105 EFNK 108 (110)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5443
No 73
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=58.69 E-value=45 Score=37.66 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=6.5
Q ss_pred hHHHhhhHHHHHHHH
Q 005743 181 LEDEKTSLSEQLAAL 195 (679)
Q Consensus 181 LEaE~~rLq~qv~e~ 195 (679)
|+++.+.+++.+.++
T Consensus 517 ~~~~~~~~~e~~~ql 531 (592)
T 1f5n_A 517 MEQKERSYQEHLKQL 531 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 74
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.63 E-value=1.3e+02 Score=28.73 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
|.+|+.+|..-...+..|...-..-......+++++..+
T Consensus 44 ~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L 82 (155)
T 2efr_A 44 SAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 566666665555444444433333333334444444433
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.52 E-value=11 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s 246 (679)
..+..|-.|..|||..+.+|+.+..+|..||..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777777777777777777777754
No 76
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.25 E-value=23 Score=31.92 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=34.8
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
.|+|. +.++++++..+..++..++..+..|+.+...|++++.+
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 77888888888889999999999999888888887754
No 77
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.25 E-value=1.4e+02 Score=28.32 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 126 ELDSLRSLLQESKEREFKLQAELSEW-----KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kLE~ELlEy-----KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.|..|..-+.+|+..--.-+.+|.=. .||+.|-.||++-.+-..||-.|....+++|-.-++-+.+++..
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 45555555555554433333333322 56666878887777777777777776666666555555544433
No 78
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.03 E-value=76 Score=28.96 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhh
Q 005743 231 KELQMEKRNLACK 243 (679)
Q Consensus 231 keLQ~EKreL~~K 243 (679)
.+||.+|..|.-|
T Consensus 94 ~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 94 VRLQKDNDSLQGK 106 (112)
T ss_dssp -------------
T ss_pred HHHHhhccchhhh
Confidence 3444444444433
No 79
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.85 E-value=87 Score=28.41 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
..||..||.+|+.|+-+-..|..+- .-+|. |.|++.+. ..++..+..+|..|+++...+..+++
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~---~sLE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMK---ASLENSLEETKGRY---CMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444322222111 11222 44444433 23555666677777777666665544
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.37 E-value=75 Score=26.93 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-H
Q 005743 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-Y 300 (679)
Q Consensus 222 EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-y 300 (679)
|+..|+..|..|+...+++-.+++..-..+.. .+..++++...+|..-+....+...|..-+-.-=-|+. |
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~--------~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQD--------TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56678888888888888877777665444432 34455666666666655777777777777665444554 7
Q ss_pred HHHHH
Q 005743 301 LRWVN 305 (679)
Q Consensus 301 lRwiN 305 (679)
++++.
T Consensus 74 RkLLE 78 (84)
T 1gk4_A 74 RKLLE 78 (84)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66654
No 81
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.19 E-value=1.1e+02 Score=26.43 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+..|+.++..-..+|..|..++..++.+-..|+..+.+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555443
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.09 E-value=42 Score=37.79 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=57.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~R 291 (679)
+.++|++|-.++.+|.+.+++...--+.+...|...+.+..-..| +=+++-..++.-+.+|+..=...+.+|.+|+..=
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN-tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN-TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH-HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777777777666666666666555554443222 1222222556666666665555567777777776
Q ss_pred hchHHHHHHHHH-HHHHH
Q 005743 292 LNEVEELAYLRW-VNSCL 308 (679)
Q Consensus 292 e~dvEELvylRw-iNacL 308 (679)
++-+.++..|.- |.+.+
T Consensus 141 edq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 141 RAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666532 44443
No 83
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=54.08 E-value=43 Score=28.54 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
|+.|+-.+.++..-...|+-.|-+|--|++-|++.+..
T Consensus 34 I~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 34 IRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 78888899999999999999999999999998887654
No 84
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=54.04 E-value=8.1 Score=37.88 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHhhh-cChHHHHHHHHHhhhhhchHHHH
Q 005743 271 LVLRH-TNEDLSKQVEGLQMSRLNEVEEL 298 (679)
Q Consensus 271 ~~LR~-~Ne~L~~QlE~l~~~Re~dvEEL 298 (679)
..||. .+++|..|+++|.+++++|.+||
T Consensus 205 ~~l~~~~~~~L~~Qi~~fe~~~~eD~~el 233 (233)
T 2f31_A 205 QELREIENEDMKVQLCVFDEQGDEDFFDL 233 (233)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCHhhC
Confidence 34454 89999999999999999999996
No 85
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.81 E-value=1.4e+02 Score=33.12 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=13.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRN 239 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKre 239 (679)
..++.|+..+.+|+.....|+.....
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444443
No 86
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.44 E-value=89 Score=26.99 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhcc-----------ch---hHHHHHHHHHHHHhhhcChHH
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA-----------SE---SDIISKIKAEALVLRHTNEDL 280 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~-----------~E---s~~Va~~~eE~~~LR~~Ne~L 280 (679)
.+.+++.+..+++.....|+.+..++..++...+..+..+... ++ .+++..+..+...|+..=.+|
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666665555544331 11 245566666666554444444
Q ss_pred HHHHHHH
Q 005743 281 SKQVEGL 287 (679)
Q Consensus 281 ~~QlE~l 287 (679)
..+++.+
T Consensus 84 ~~~i~~l 90 (112)
T 1l8d_A 84 IDRKSEL 90 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 87
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=53.41 E-value=5.1 Score=31.07 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=2.6
Q ss_pred Cccccc
Q 005743 519 GVVQRA 524 (679)
Q Consensus 519 ~kv~Ra 524 (679)
.|++|+
T Consensus 31 AKLRkV 36 (43)
T 2pbd_V 31 AKLRKV 36 (43)
T ss_dssp CCCBCC
T ss_pred hhhccc
Confidence 444443
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.79 E-value=24 Score=30.03 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=18.0
Q ss_pred hhhhchh-HHHHHHHHHHhHhHHHHHHHHHhh
Q 005743 150 EWKRNPK-VLELERELEAKKIENDEIVRRVGM 180 (679)
Q Consensus 150 EyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~s 180 (679)
+.+.++. |.+|+.+|..+..+|..|..++--
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 666666666666666666555433
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.44 E-value=1.8e+02 Score=30.59 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHHH
Q 005743 214 SSSQNLEMEVVELRR 228 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR 228 (679)
..|++++.||.+|||
T Consensus 457 ~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 457 HKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 555666666666653
No 90
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.07 E-value=20 Score=40.22 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKEREF 142 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~ 142 (679)
..||.+++..-++-+.|..
T Consensus 299 ~~e~qqm~~~a~e~~~~~~ 317 (575)
T 2i1j_A 299 TIDVQQMKAQAREEKLAKQ 317 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 7789999887766555443
No 91
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.73 E-value=1.1e+02 Score=25.72 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
+.+.+.+....-.+|..|+.+|..|+.+-.+.++.+.....-.+
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555578889999999999999888888877655444
No 92
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.66 E-value=50 Score=29.21 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
.++.....+|..|+++..+++..+++..
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4888899999999999999999988874
No 93
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=51.47 E-value=19 Score=36.13 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=31.0
Q ss_pred hhHHhhhccchhHHHHHHHHHhhHHH---HHHHHHHhhhhhcccHHHHHH-HHHHH
Q 005743 560 SMIGEIENRSSHLLAIKADVATQGEF---VNSLIREVNNAVYQNIEDVVA-FVKWL 611 (679)
Q Consensus 560 ~migEi~nRSs~l~aIk~Dvet~~~~---I~~L~~eV~~~~~~dmedv~~-Fv~wl 611 (679)
.+=+||.+|++||..||.....-.++ +|....-+......-.++..+ ||+.+
T Consensus 109 rIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~KreFVkyS 164 (213)
T 3ajm_A 109 KIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYS 164 (213)
T ss_dssp THHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred hCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 55789999999999999887655544 333333333322222344333 66654
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.29 E-value=11 Score=31.70 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=21.9
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhH
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSL 188 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rL 188 (679)
+++|. |.+|+.....-.+|...|...|..|+.|++.|
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555 55555555544566666666666666665543
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=51.08 E-value=61 Score=27.71 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005743 125 LELDSLRSLLQESKERE 141 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE 141 (679)
.||+.|+++..+|+..-
T Consensus 3 ~eie~L~~q~~~Le~~l 19 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKL 19 (86)
T ss_dssp ---------CTTHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 46777777766554433
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.92 E-value=38 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDE 184 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE 184 (679)
|.+||..|+.+..||......|..|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~ 48 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELE 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555555444444444444
No 97
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=50.15 E-value=1.2e+02 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005743 126 ELDSLRSLLQESKEREFKL 144 (679)
Q Consensus 126 EI~~Lr~~V~eLqERE~kL 144 (679)
||+.|+++..+|+..-..+
T Consensus 2 el~~l~~~~~sLE~~l~e~ 20 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREM 20 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6677777666655443333
No 98
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=50.03 E-value=84 Score=26.66 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHh
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEK 185 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~ 185 (679)
-+||..+|..+..||+.|+.-|++|.+.-
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998873
No 99
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.84 E-value=70 Score=34.66 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=34.1
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 210 NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 210 ~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
..+..+|.+|-.++.+|.+.+++...--+.+...|...+.++.-
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~d 106 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANN 106 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567888888888888888888888888888888777777643
No 100
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.88 E-value=24 Score=26.40 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s 246 (679)
++.+.||.+|+||-..|.+|+.|-.-|..-|-.
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 356789999999999888888887766554433
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.74 E-value=2.3e+02 Score=29.90 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
++..+......|+.+..+|+..+........
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~ 384 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444666666677666665554444
No 102
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.57 E-value=44 Score=27.10 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
+.+|+.+++.-..+...|..+|+.|+.|..-|...+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444445555555555555555555554443
No 103
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=46.30 E-value=28 Score=32.23 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh
Q 005743 237 KRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292 (679)
Q Consensus 237 KreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re 292 (679)
...|.-|||....+++++....+.+++++...|.. .|.++|+.+..-+.
T Consensus 12 iq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~-------~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 12 IKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKA-------TLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33444555555555555556678889999999988 77888887776554
No 104
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.01 E-value=70 Score=27.44 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
..+...+....||...+..|..++.+|..+|..||-..
T Consensus 28 e~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~ 65 (89)
T 3bas_A 28 EDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKV 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55666677777888888888888888887755555433
No 105
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.11 E-value=1e+02 Score=26.24 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAELSE---W-KRNPKVLELERELEAKKIENDEIVRRVGMLE 182 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlE---y-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLE 182 (679)
...|++.|-..|..|+.+-..|+.+|.. | ...+.+.+|..+|.....+++.+-.+=.-|+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999986 3 3444477777777666666665555544443
No 106
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.46 E-value=56 Score=35.49 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
++..|...|..-+++.+.|+.++..
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4555555555555555666655543
No 107
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.31 E-value=55 Score=25.27 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
.+|+.+.+........|..+|+.|+.||+-|..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444443344455677788888888776654
No 108
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.11 E-value=1.3e+02 Score=27.88 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 005743 230 NKELQMEKRNLACKFSSM 247 (679)
Q Consensus 230 NkeLQ~EKreL~~KL~sA 247 (679)
.++||.|.-.|..+|..|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444445555555555
No 109
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.61 E-value=54 Score=28.04 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-H
Q 005743 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-Y 300 (679)
Q Consensus 222 EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-y 300 (679)
|+..|+..+..|+...+++-.++...-.++. ..+..++++...+|..-+....+...|..-+-.-=-|+. |
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q--------~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSR--------RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444555555555444444444433322221 123344555555555555666777777776655444554 7
Q ss_pred HHHHH
Q 005743 301 LRWVN 305 (679)
Q Consensus 301 lRwiN 305 (679)
++++.
T Consensus 76 RkLLE 80 (86)
T 1x8y_A 76 RKLLE 80 (86)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77665
No 110
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.37 E-value=33 Score=25.72 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
++.+.||..|+||-..|.+|+.|-.-|...|-
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 36788999999999999999988777766553
No 111
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.74 E-value=1.5e+02 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
+..|+.++..-..+|..|..++..++.+-..|+..+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444555555555555555555555444
No 112
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=42.21 E-value=5.6 Score=42.95 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=7.3
Q ss_pred cccHHHHHHHHH
Q 005743 598 YQNIEDVVAFVK 609 (679)
Q Consensus 598 ~~dmedv~~Fv~ 609 (679)
|.++.+++.++.
T Consensus 222 F~SL~eLv~~y~ 233 (535)
T 2h8h_A 222 FNSLQQLVAYYS 233 (535)
T ss_dssp ESSHHHHHHHHH
T ss_pred ccChHHhheeec
Confidence 556666666654
No 113
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.05 E-value=1.9e+02 Score=26.41 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=23.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
+...++.=|....+||.+-.+++.+-++=..+|..-
T Consensus 50 L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 50 LVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777777776666644444433
No 114
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=41.69 E-value=26 Score=27.85 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL 244 (679)
.-+.+||.+|..|...|..|..+...|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4478888888888888888888777766544
No 115
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.37 E-value=2.4e+02 Score=26.74 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchh-----HHHHHHHHHHhHhHHHHHHHHHhhhHHH
Q 005743 124 FLELDSLRSLLQESKEREFKLQAELSEW---KRNPK-----VLELERELEAKKIENDEIVRRVGMLEDE 184 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy---KEQE~-----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE 184 (679)
..||..||.-...+|..=.+-+..|..- .-|.+ ++||+..|+.+..=++-|..+|..|..|
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKE 127 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKE 127 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444444 22222 5566666666666666666666666544
No 116
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=40.51 E-value=6.6 Score=42.67 Aligned_cols=17 Identities=0% Similarity=-0.042 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005743 124 FLELDSLRSLLQESKER 140 (679)
Q Consensus 124 ~~EI~~Lr~~V~eLqER 140 (679)
..-++.|...|..+.++
T Consensus 82 ~~~l~~~d~vv~~a~~~ 98 (515)
T 3icg_A 82 QTWMKRVEEIANYAFDN 98 (515)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 33466666666655443
No 117
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.18 E-value=1.5e+02 Score=25.80 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=2.4
Q ss_pred HHHHHH
Q 005743 159 ELEREL 164 (679)
Q Consensus 159 ELqrqL 164 (679)
+||.-|
T Consensus 14 eLQSAL 19 (81)
T 1wt6_A 14 ELQEAL 19 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 118
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=39.89 E-value=30 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=21.7
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 005743 172 DEIVRRVGMLEDEKTSLSEQLAALSVI 198 (679)
Q Consensus 172 ~~Lk~kI~sLEaE~~rLq~qv~e~~~~ 198 (679)
+.|+.-+.+|++|++.|.+.|.++..-
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778899999999999999887643
No 119
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.54 E-value=1.3e+02 Score=26.33 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 136 ESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 136 eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.+-.||...|.+...-++.|.+..|...| -.||+.-..+|.-||.+.++++..+.++
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777776654445555576666655 3456666666666666666665555443
No 120
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.07 E-value=39 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743 123 LFLELDSLRSLLQESKEREFKLQAEL 148 (679)
Q Consensus 123 ~~~EI~~Lr~~V~eLqERE~kLE~EL 148 (679)
++.|+..|...|++||+|--+||.-.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999988643
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.58 E-value=27 Score=28.00 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ 191 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q 191 (679)
+.+|+.....-..+...|..+|..|+.+...|..+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 122
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.55 E-value=39 Score=35.59 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhh
Q 005743 157 VLELERELEAKKIENDEIVRRVGML 181 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sL 181 (679)
|..|+.+|......|..|+++|..|
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444433
No 123
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.07 E-value=2.2e+02 Score=25.41 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 005743 127 LDSLRSLLQESKER 140 (679)
Q Consensus 127 I~~Lr~~V~eLqER 140 (679)
++.||..+..|+.+
T Consensus 7 ~e~lre~l~~le~~ 20 (97)
T 2eqb_B 7 YNQLKEDYNTLKRE 20 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 124
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.62 E-value=1.4e+02 Score=26.01 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
..+++|+.|=.+|.....+|+.++..|..-|...+...
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554433
No 125
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.61 E-value=48 Score=29.11 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-H
Q 005743 222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-Y 300 (679)
Q Consensus 222 EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-y 300 (679)
.+..|+..|..|+-..+++-.+++..-.++.. +++.++++...+|..-+..+.+...|..-+..---|+. |
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~--------~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRR--------MLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444554445544444443322221 23334444444444444555555555555544444444 6
Q ss_pred HHHH
Q 005743 301 LRWV 304 (679)
Q Consensus 301 lRwi 304 (679)
++++
T Consensus 85 rkLL 88 (95)
T 3mov_A 85 RKLL 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 126
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.53 E-value=63 Score=25.72 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
+.+|+.+...-..+...|..+|..|+.|...|..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333334444444444444444444443
No 127
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.25 E-value=43 Score=34.37 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743 119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE 190 (679)
Q Consensus 119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-------KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~ 190 (679)
.+.+...+|..|+..+.. |..+|.+. +. +. +++|++++.....+...|...+..++.|..+|++
T Consensus 18 ~~~~~~~~~~~~~~e~~~-------l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 18 LSSGDAAELEQLRREAAV-------LREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp -----------------------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHH-------HHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778777654442 22233111 22 33 6677777766666666666666666666666655
Q ss_pred HHHH
Q 005743 191 QLAA 194 (679)
Q Consensus 191 qv~e 194 (679)
++..
T Consensus 90 Eler 93 (251)
T 3m9b_A 90 EVDR 93 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 128
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.99 E-value=89 Score=24.82 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743 220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLT 252 (679)
Q Consensus 220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~ 252 (679)
|....+|++.+..|-..|..|+.-|..|..+|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999999999999986663
No 129
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=36.97 E-value=8 Score=33.46 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=7.1
Q ss_pred cchhHHHHHHHh
Q 005743 523 RAPQVVEFYHSL 534 (679)
Q Consensus 523 RaP~vvefY~SL 534 (679)
-.+.+.++|..+
T Consensus 31 D~~~~~~l~~~~ 42 (166)
T 4evy_A 31 SLKDWLELRNKL 42 (166)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356677766543
No 130
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=36.54 E-value=1.4e+02 Score=25.34 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
.+|+.|+..|+-|+.+-..+-++|..+ .++.. |.++=.+.-..-.+++.++.++..|+-
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~~ 66 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLEH 66 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378889999999999999999999888 66766 777777777777899999999888863
No 131
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.73 E-value=62 Score=26.06 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
.+..|..++..|+.+|..|+.++.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 132
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.51 E-value=37 Score=27.68 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL 244 (679)
..+.+||.+|.+|...|..|..+...|...|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999998888888777765544
No 133
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.47 E-value=50 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743 221 MEVVELRRLNKELQMEKRNLACKFSSMENQL 251 (679)
Q Consensus 221 ~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~ 251 (679)
.+|..||+.|.+|+.+..+|..+++...+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888888777777776554
No 134
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.30 E-value=44 Score=24.64 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLAC 242 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~ 242 (679)
...||..|+||...|.+|+.|-.-|..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457999999999999999988766543
No 135
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.86 E-value=48 Score=26.53 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNL 240 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL 240 (679)
.+.+||.+|.+|...|.+|..+...|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444443
No 136
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.78 E-value=54 Score=26.01 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALS 196 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~ 196 (679)
..++.|..+|..|+.+|..|..++..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888889999988888887653
No 137
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=32.39 E-value=1.8e+02 Score=32.34 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 129 SLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 129 ~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.+.++|+.=+......+.-+-+| .++|. |.-|++.+...-..|..|..-|..+..+.+||+..|.--
T Consensus 90 ~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555666666 67777 777777777766777788877888888877777766543
No 138
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=32.16 E-value=10 Score=34.12 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.7
Q ss_pred HHHHhhccc
Q 005743 530 FYHSLMKRD 538 (679)
Q Consensus 530 fY~SL~~re 538 (679)
|.+.|.+..
T Consensus 37 li~~l~~~~ 45 (190)
T 2h57_A 37 IINKLKPSN 45 (190)
T ss_dssp HHHHTSCGG
T ss_pred HHHHHhcCC
Confidence 555555543
No 139
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.55 E-value=66 Score=23.82 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLACK 243 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~K 243 (679)
+...||..|+||=..|.+|+.|..-|.--
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56789999999999999999988766543
No 140
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.17 E-value=1.4e+02 Score=29.61 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
|..|+.++..-+.+++....+|..|+.+...|++++.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6666665444444444444444444444444444443
No 141
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.37 E-value=2.6e+02 Score=27.29 Aligned_cols=13 Identities=0% Similarity=0.447 Sum_probs=9.9
Q ss_pred hchHHHHHHHHHHH
Q 005743 292 LNEVEELAYLRWVN 305 (679)
Q Consensus 292 e~dvEELvylRwiN 305 (679)
+.|+++||. +|..
T Consensus 157 e~dv~~Fl~-~y~~ 169 (192)
T 2p22_C 157 ADDLDQFIK-NYLD 169 (192)
T ss_dssp HHHHHHHHH-HHHH
T ss_pred cchHHHHHH-HHHH
Confidence 789999995 5555
No 142
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.72 E-value=2.7e+02 Score=24.04 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEWKRN 154 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEyKEQ 154 (679)
+++|...|+.+=+.-.-|+.++.++|++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655443
No 143
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.64 E-value=84 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=14.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNLA 241 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~ 241 (679)
+..+..|+.+-.+|+.....|+.|...|.
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544443
No 144
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.37 E-value=39 Score=28.34 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=17.9
Q ss_pred hhchh-HHHHHHHHHHhHhHHHHHHHHHh
Q 005743 152 KRNPK-VLELERELEAKKIENDEIVRRVG 179 (679)
Q Consensus 152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~ 179 (679)
+..+. |.|||..|..+..+|..|..++-
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455 77777777777777666665543
No 145
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=29.28 E-value=70 Score=29.92 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhchh-HHHHHHHHHH----hHhHHHHHHHHHhhhHHHhh
Q 005743 129 SLRSLLQESKEREFKLQAELSEW-------KRNPK-VLELERELEA----KKIENDEIVRRVGMLEDEKT 186 (679)
Q Consensus 129 ~Lr~~V~eLqERE~kLE~ELlEy-------KEQE~-I~ELqrqL~~----k~~Ei~~Lk~kI~sLEaE~~ 186 (679)
+.-+++.+|+|...+|+.=..+- +..+. +..++.++.. -.+++|.|.+++.+|++..+
T Consensus 3 ~vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 3 MASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp ------------------------------------------------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887544443 22222 4445555544 23689999999999998754
No 146
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.98 E-value=2.1e+02 Score=31.59 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=10.8
Q ss_pred cchhhhhHHHHHHHHHH
Q 005743 212 GSSSSQNLEMEVVELRR 228 (679)
Q Consensus 212 ~e~~l~~LE~EV~ELRR 228 (679)
+..+|..||..+..+..
T Consensus 180 l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 180 LHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667777777766543
No 147
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.87 E-value=72 Score=23.62 Aligned_cols=29 Identities=28% Similarity=0.155 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLAC 242 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~ 242 (679)
++.+.||..|+||=..|.+|+.|-.-|..
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35678999999999999999888765543
No 148
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=28.79 E-value=12 Score=34.41 Aligned_cols=10 Identities=0% Similarity=0.115 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 005743 582 QGEFVNSLIR 591 (679)
Q Consensus 582 ~~~~I~~L~~ 591 (679)
+.+.+..|+.
T Consensus 85 ~~~~v~~Ll~ 94 (222)
T 3ehr_A 85 NLSWLRECLD 94 (222)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 3444555554
No 149
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.58 E-value=1.4e+02 Score=26.11 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
+|+.|+-.|++|+.+++.|++-+
T Consensus 54 ~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665443
No 150
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.43 E-value=1.3e+02 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
|.+||-+|.-....|+.|+..|...+.+..+|+.++
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 151
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.01 E-value=1.2e+02 Score=32.65 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=11.2
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+++..++.++-..+.+.++|-+++.+
T Consensus 31 ~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 31 AELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 152
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.28 E-value=2.7e+02 Score=24.72 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=10.8
Q ss_pred HHhHhHHHHHHHHHhhhHH
Q 005743 165 EAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 165 ~~k~~Ei~~Lk~kI~sLEa 183 (679)
..+..+|+.|+..|..+++
T Consensus 19 ~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 19 VAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3344466666666666553
No 153
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.23 E-value=2.4e+02 Score=22.62 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQ 234 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ 234 (679)
-+-|-++|+.|..||.-|.-++.... .-+..||.|.-.|+...+.||
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS-----------------~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNS-----------------NHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhH-----------------HHHHHHHhhhhhHHHHHHHHc
Confidence 46677888888888877776654433 345678888888888888776
No 154
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.03 E-value=1.2e+02 Score=27.92 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=26.6
Q ss_pred HHHHHHHhHhHHHHHHHHHhhhHHHhhhH---HHHHHHHHHHHH
Q 005743 160 LERELEAKKIENDEIVRRVGMLEDEKTSL---SEQLAALSVILE 200 (679)
Q Consensus 160 LqrqL~~k~~Ei~~Lk~kI~sLEaE~~rL---q~qv~e~~~~~~ 200 (679)
++.+|+.-...+..|+..+..|......| +.++.++..+.+
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~ 50 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLE 50 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666667777777777777 777777776666
No 155
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.98 E-value=1.6e+02 Score=27.91 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=45.6
Q ss_pred HHHHHHHhhH-----HHHHHHHHHhhhhhcccHHHHHHHHH-----HH---HhhhhhhhhHHHHHhhc-CCCccchhHHH
Q 005743 574 AIKADVATQG-----EFVNSLIREVNNAVYQNIEDVVAFVK-----WL---DDELGFLVDERAVLKHF-DWPEKKADTLR 639 (679)
Q Consensus 574 aIk~Dvet~~-----~~I~~L~~eV~~~~~~dmedv~~Fv~-----wl---D~eLs~LsDEraVLk~F-~wPEkK~dalR 639 (679)
+++.||-..+ ..+..+.++|..+ .+++..|..|+. |- +.||...++|+++|.+= +.-.-=-+.+.
T Consensus 39 ~LRkDV~~RgvrP~~~ql~~v~kdi~~a-~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ 117 (141)
T 3okq_A 39 IMRKDVAERRSQPAKKKLETVSKDLENA-QADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLG 117 (141)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554 5566666666665 666777777765 32 77999999999998776 22221223344
Q ss_pred HHHhhhhhhh
Q 005743 640 EAAFGYRDLK 649 (679)
Q Consensus 640 eAA~lY~~L~ 649 (679)
.|+..|.-+.
T Consensus 118 ka~etf~lVe 127 (141)
T 3okq_A 118 KALETFDLIK 127 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 156
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.68 E-value=3.2e+02 Score=23.75 Aligned_cols=57 Identities=26% Similarity=0.337 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743 128 DSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 128 ~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~ 193 (679)
+.|---|+.|.-|=-.|+.|=+.| ++.|+.-.+||-.|.++++.=+++.++|++++.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQy---------EkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQY---------EWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 345555556666666666666666 234555568999999999999999999999875
No 157
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.54 E-value=70 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAALSV 197 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~ 197 (679)
..+..|..+|..|+.+|..|..++..+..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777665543
No 158
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.50 E-value=1.1e+02 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRN 239 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKre 239 (679)
..+.+|+.+|..|...|..|+.+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555443
No 159
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.01 E-value=14 Score=29.93 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=6.5
Q ss_pred hhHHHHHHHhh
Q 005743 525 PQVVEFYHSLM 535 (679)
Q Consensus 525 P~vvefY~SL~ 535 (679)
-.+..+|..+-
T Consensus 27 ~~l~~~F~~~D 37 (91)
T 2pmy_A 27 ARLRSVFAACD 37 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 44666666664
No 160
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.72 E-value=1.6e+02 Score=25.41 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHH
Q 005743 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297 (679)
Q Consensus 218 ~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEE 297 (679)
.|+.+..++-....+++..|.+|-.++..+|.++ ...+.+-+ .+..+|+.|...=+.-+.|
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~L------------e~s~~~q~-------~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSL------------EEARAERE-------RARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------HHHHHHHH-------HHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHH
Q 005743 298 LAYLR 302 (679)
Q Consensus 298 LvylR 302 (679)
|..+|
T Consensus 64 L~elR 68 (79)
T 3cvf_A 64 LSELR 68 (79)
T ss_dssp HHHHH
T ss_pred HHHHH
No 161
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=25.54 E-value=1.7e+02 Score=24.74 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 225 ELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 225 ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
+|.+....|..|+.||..+|..++..+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888888888888888766554
No 162
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=25.50 E-value=2.3e+02 Score=24.05 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
.=|..|+.++..|+.++..|+.++.+-
T Consensus 6 ~AI~~Lr~~~d~L~kkq~~L~~~i~~e 32 (79)
T 4abm_A 6 EAIQRLRDTEEMLSKKQEFLEKKIEQE 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999877654
No 163
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.33 E-value=1.5e+02 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
|.+.|...|..|+.|+..|+.+..++..+.+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777766666555544
No 164
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.11 E-value=3.1e+02 Score=29.74 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHhhhHHHhhhHHHHHH
Q 005743 175 VRRVGMLEDEKTSLSEQLA 193 (679)
Q Consensus 175 k~kI~sLEaE~~rLq~qv~ 193 (679)
.+++..|..+..+|+..+.
T Consensus 83 tq~skkml~~~~~~e~~~~ 101 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTIL 101 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455556666666655443
No 165
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=24.32 E-value=3.8e+02 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=6.1
Q ss_pred HHHHHHhhhhhhhhhH
Q 005743 233 LQMEKRNLACKFSSME 248 (679)
Q Consensus 233 LQ~EKreL~~KL~sAe 248 (679)
++.+|.+|...|...+
T Consensus 66 l~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333333333333333
No 166
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.05 E-value=1.2e+02 Score=32.35 Aligned_cols=14 Identities=7% Similarity=0.330 Sum_probs=5.4
Q ss_pred HHHHHHHhhhHHHh
Q 005743 172 DEIVRRVGMLEDEK 185 (679)
Q Consensus 172 ~~Lk~kI~sLEaE~ 185 (679)
..|+.+|..|+.+.
T Consensus 6 ~~~~~~~~~l~~~~ 19 (403)
T 4etp_A 6 AALKEKIAALKEKI 19 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333343333333
No 167
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.94 E-value=1.1e+02 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=16.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF 244 (679)
Q Consensus 211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL 244 (679)
+++.++..||.|=..||.....|+.|...|..-|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544444444333
No 168
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.63 E-value=3.8e+02 Score=23.66 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
+.+.-|+..+..|....+.|+.+...+..++...+..
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555444433
No 169
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=23.59 E-value=18 Score=30.10 Aligned_cols=9 Identities=22% Similarity=0.659 Sum_probs=5.2
Q ss_pred hhHHHHHHH
Q 005743 525 PQVVEFYHS 533 (679)
Q Consensus 525 P~vvefY~S 533 (679)
-.|.++|..
T Consensus 34 ~~l~~~F~~ 42 (100)
T 2j76_E 34 ESIKEFFRG 42 (100)
T ss_dssp SHHHHHSCS
T ss_pred HHHHHHHHh
Confidence 456666654
No 170
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=23.30 E-value=1e+03 Score=28.43 Aligned_cols=62 Identities=21% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHH
Q 005743 125 LELDSLRSLLQ-------ESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189 (679)
Q Consensus 125 ~EI~~Lr~~V~-------eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq 189 (679)
.--+.|...|+ ..||.+.+.+++. .|||+-.+|++|-=...++....+..+--||+++...+
T Consensus 649 rtrd~LqkSVqlAiEItT~sqEa~Ar~~A~~---~eQea~g~Lerqki~d~a~aE~~r~~Llel~a~s~ave 717 (861)
T 2zuo_A 649 RTRDALQRSVQLAIEITTNSQEAAAKHEAQR---LEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE 717 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 34456666665 2333333333322 67888555555544444444455555555555554433
No 171
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=23.22 E-value=6.1e+02 Score=25.86 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHH-hhhHHHhhhHHHHHHHHHHHHH
Q 005743 127 LDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRV-GMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 127 I~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI-~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
++.+...+..-++|+..++.+++.- +|.+. | ||+-+...++-+.+-..++ ..|+.-.+.-++.++.
T Consensus 44 leEIqkKLeAAEERRks~Ea~~lk~laekrEhe~ev--lqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laa------ 115 (240)
T 4f61_I 44 LEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREV--IQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAA------ 115 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------
Confidence 3445567777799999999988876 22222 2 3333333333333333222 1122221111222211
Q ss_pred HHhhhhhhhhccchhhhhHHHHHHHHHHH-----HHHHHHHHHhhhhhhhhhHHHhhh----hhcc------chhHHHHH
Q 005743 201 RKNDNKNAINMGSSSSQNLEMEVVELRRL-----NKELQMEKRNLACKFSSMENQLTS----LAKA------SESDIISK 265 (679)
Q Consensus 201 Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~-----NkeLQ~EKreL~~KL~sAe~~~~~----~~~~------~Es~~Va~ 265 (679)
+..+|++-+--|++.|+. +.-.+.=..++-.||++|+.+--+ +.+. -|.+++-+
T Consensus 116 -----------l~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqk 184 (240)
T 4f61_I 116 -----------MLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQR 184 (240)
T ss_dssp -----------HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124555555555666553 222333345566677776643211 1000 01112122
Q ss_pred HHH-HHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743 266 IKA-EALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300 (679)
Q Consensus 266 ~~e-E~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy 300 (679)
+.+ ..+.-+..-+.|...++.-..+|...+..+..
T Consensus 185 a~e~n~~f~k~~eekl~~KmE~~kEnRea~~~a~~E 220 (240)
T 4f61_I 185 AIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLE 220 (240)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 222 22333445567778888888888888887774
No 172
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=23.19 E-value=18 Score=32.37 Aligned_cols=7 Identities=0% Similarity=0.012 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005743 667 DLALKKM 673 (679)
Q Consensus 667 ~~aL~km 673 (679)
+..+..|
T Consensus 175 ~~l~~~l 181 (190)
T 2h57_A 175 QEGVDWL 181 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 173
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.07 E-value=2.5e+02 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=19.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSE 150 (679)
Q Consensus 118 ~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlE 150 (679)
-+..++..++..++..+..++.+-...+.++..
T Consensus 63 ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 63 IDSTTQINTLNTRKAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777666655544444433
No 174
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.89 E-value=87 Score=23.24 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNL 240 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL 240 (679)
....-.+|.+|+|.|.-|++|-|-|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 4455567778888888887776654
No 175
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.84 E-value=3.9e+02 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~ 245 (679)
.....|-.++..|++.|.++..|...+..|++
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 176
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=22.74 E-value=64 Score=30.67 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=61.7
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743 210 NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM 289 (679)
Q Consensus 210 ~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~ 289 (679)
.-+++.-.+||.-++|||+.--+.+.+-..|..||.+|=.-. +-|+.-++ ++=+..+-.+|+.|.-+|+..-+
T Consensus 74 eALEq~R~nlektAeeLRkaHPdVE~qA~~lrdkLqaAVQ~t-----~qesqkLa--KeVasn~eetN~KLaPkiK~Ay~ 146 (166)
T 1eq1_A 74 EALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTT-----VQESQKLA--KEVASNMEETNKKLAPKIKQAYD 146 (166)
T ss_dssp HHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHH-----HHHHHHHH--HHHHSCCCSSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhh-----HHHHHHHH--HHHHhhHHHHHHHhhhHHHHHHH
Confidence 334688899999999999999999999999999999884321 23444444 67778888889988888877655
Q ss_pred hhhchHHHHH
Q 005743 290 SRLNEVEELA 299 (679)
Q Consensus 290 ~Re~dvEELv 299 (679)
+-....+|+.
T Consensus 147 dF~K~aeevq 156 (166)
T 1eq1_A 147 DFVKHAEEVQ 156 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 177
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.67 E-value=3.5e+02 Score=22.88 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 161 qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
.+.+.....|.+.|..++..++.+..++.++-.+...+..
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~ 42 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKA 42 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666665544444333333
No 178
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=22.58 E-value=2.2e+02 Score=24.73 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLED 183 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEa 183 (679)
.+|+.|+..|+-|+.+-..+-++|..+ .++.. |.++=.+.-..-.+++.++.++..++.
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999988 66766 777777777777888888888877764
No 179
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.46 E-value=4.1e+02 Score=23.61 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 221 MEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 221 ~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
.||..|+.+...++.++..|..+++..++-
T Consensus 68 ~el~~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 68 RELQVLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777778888888877777665543
No 180
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=22.13 E-value=40 Score=27.64 Aligned_cols=9 Identities=11% Similarity=0.626 Sum_probs=5.2
Q ss_pred hhHHHHHHH
Q 005743 525 PQVVEFYHS 533 (679)
Q Consensus 525 P~vvefY~S 533 (679)
-.|.++|..
T Consensus 28 ~~l~~~F~~ 36 (99)
T 2la6_A 28 ESVADYFKQ 36 (99)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 456666643
No 181
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.08 E-value=57 Score=33.48 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHh
Q 005743 265 KIKAEALVLRHTNEDLSKQVEGLQ 288 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE~l~ 288 (679)
.++.+...|-..|+.|...++.++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar 81 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEAR 81 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555544
No 182
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.04 E-value=1.4e+02 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=13.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 005743 213 SSSSQNLEMEVVELRRLNKELQMEKRNL 240 (679)
Q Consensus 213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL 240 (679)
+..+++|+.+-.+|+.....|+.|+.-|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 183
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.79 E-value=1.3e+02 Score=26.34 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743 216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL 254 (679)
Q Consensus 216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~ 254 (679)
..+||.++..|.+....|..|+..+..-++....++..|
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999998888777777666544
No 184
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=21.51 E-value=20 Score=34.67 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=6.6
Q ss_pred chhHHHHHHhhhh
Q 005743 634 KADTLREAAFGYR 646 (679)
Q Consensus 634 K~dalReAA~lY~ 646 (679)
+.|.+--...+|.
T Consensus 219 ~~Di~slG~il~~ 231 (312)
T 2iwi_A 219 PATVWSLGILLYD 231 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 4555554555544
No 185
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.45 E-value=4.5e+02 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQL 192 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv 192 (679)
.|.++|..=|.-|.+.+.+++++-
T Consensus 172 ~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 172 LETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 367777777777776666666554
No 186
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.18 E-value=2.3e+02 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743 170 ENDEIVRRVGMLEDEKTSLSEQLAA 194 (679)
Q Consensus 170 Ei~~Lk~kI~sLEaE~~rLq~qv~e 194 (679)
+|..++-.|..|+.+|..|.+-+.+
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666554443
No 187
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=20.97 E-value=5e+02 Score=24.03 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHhhH-HHHHHHHHHhhhhh-----cccHHHHHHHHHHHHhhhhhhhhHHHHHhhc-CCCc-cchhHHHH
Q 005743 569 SSHLLAIKADVATQG-EFVNSLIREVNNAV-----YQNIEDVVAFVKWLDDELGFLVDERAVLKHF-DWPE-KKADTLRE 640 (679)
Q Consensus 569 Ss~l~aIk~Dvet~~-~~I~~L~~eV~~~~-----~~dmedv~~Fv~wlD~eLs~LsDEraVLk~F-~wPE-kK~dalRe 640 (679)
++|.......-+.+. +-++.|..+|...- ..+++++..|-+.+.+-|...++.---|+.- +|+- +......-
T Consensus 25 ~~F~~~l~~~~~~~~~e~L~~ll~~I~~~G~rL~~~~t~~~l~~YK~lVk~Fl~~~v~~~~~l~~~~~~~r~gr~r~y~i 104 (145)
T 2qup_A 25 VSFSEVMGKQRDEKAYERLQALMSKIDDQGKLLSETRTIEELRKYKELVKEFVGDAVELGLRLEERRGFNRRGRTKIYKI 104 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHheehhhcccCCCCCeeEEee
Confidence 344444433333333 55666666666653 7889999999998888888887765555444 6643 33444444
Q ss_pred HHhhhhhhhhhHhhh
Q 005743 641 AAFGYRDLKKLESEV 655 (679)
Q Consensus 641 AA~lY~~L~~l~~e~ 655 (679)
.-..-.+|+.|..++
T Consensus 105 V~~ID~kL~eLt~~l 119 (145)
T 2qup_A 105 VKEVDRKLLDLTDAV 119 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHH
Confidence 555566777777665
No 188
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=20.61 E-value=21 Score=32.40 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.4
Q ss_pred HHHHHH
Q 005743 607 FVKWLD 612 (679)
Q Consensus 607 Fv~wlD 612 (679)
+..|+.
T Consensus 116 ~~~~l~ 121 (196)
T 3llu_A 116 LHITVS 121 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 189
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.53 E-value=1e+02 Score=25.69 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 005743 221 MEVVELRRLNK 231 (679)
Q Consensus 221 ~EV~ELRR~Nk 231 (679)
.|+.+|++.|.
T Consensus 61 ~e~~~L~~~~~ 71 (83)
T 1nkp_B 61 QDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 190
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.47 E-value=3.8e+02 Score=22.96 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=30.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743 211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ 250 (679)
Q Consensus 211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~ 250 (679)
++...+..|..||.+||=.+.+++++...+..+....-..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888888888877766555433
No 191
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.33 E-value=1.5e+02 Score=21.92 Aligned_cols=27 Identities=15% Similarity=-0.061 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLA 241 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~ 241 (679)
+.+.||..|+||=..|.+|+.|-.-|.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356789999999888888888766554
No 192
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.30 E-value=1.9e+02 Score=25.06 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743 214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS 253 (679)
Q Consensus 214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~ 253 (679)
.+..+++.+|.+|.+.|..|..+...|...++.....+..
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888889999999999988888888877777655443
No 193
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.28 E-value=1.4e+02 Score=22.04 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLA 241 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~ 241 (679)
+...||..|+||=..|.+|+.|-.-|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567788899998888888888766554
No 194
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.20 E-value=1.4e+02 Score=22.07 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743 215 SSQNLEMEVVELRRLNKELQMEKRNLAC 242 (679)
Q Consensus 215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~ 242 (679)
+++.||..|+||=..+..|+.|-.-|..
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5778899999998888888887766544
No 195
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.01 E-value=1.6e+02 Score=25.72 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHH
Q 005743 221 MEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297 (679)
Q Consensus 221 ~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEE 297 (679)
+|...|+...+.|+.+...|...+..++++++...-..+..---+.--+||-+|...-.|.-.|-..+.-+-.++-+
T Consensus 1 ~~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~~~v~~ 77 (85)
T 3viq_B 1 MEKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFD 77 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHH
Done!