Query 005743
Match_columns 679
No_of_seqs 217 out of 219
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 06:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005743.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005743hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 73.5 10 0.00074 31.8 9.9 37 164-200 3-39 (133)
2 d2ap3a1 a.24.27.1 (A:12-196) H 70.2 24 0.0017 28.1 14.7 20 125-144 5-24 (185)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 64.7 21 0.0015 29.1 9.8 37 165-201 4-40 (107)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 49.3 51 0.0037 26.6 9.6 27 125-151 8-34 (107)
5 d2bnxa1 a.118.1.23 (A:133-475) 42.3 8.1 0.00059 37.8 3.9 37 276-315 213-249 (343)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 38.4 40 0.0029 25.2 6.6 62 218-284 1-62 (66)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 31.3 1.3E+02 0.0093 24.5 10.9 40 122-161 5-45 (133)
8 d1gqea_ e.38.1.1 (A:) Polypept 30.2 1.3E+02 0.0097 29.4 10.8 55 129-184 3-63 (362)
9 d1seta1 a.2.7.1 (A:1-110) Sery 27.6 87 0.0064 25.1 7.5 28 219-246 69-96 (110)
10 d1i4da_ a.238.1.2 (A:) Arfapti 27.1 1.6E+02 0.012 24.3 19.8 42 265-310 149-190 (200)
11 d1f5na1 a.114.1.1 (A:284-583) 26.7 1.2E+02 0.0091 26.8 9.2 8 37-44 27-34 (300)
12 d1seta1 a.2.7.1 (A:1-110) Sery 26.0 1.5E+02 0.011 23.6 8.8 27 169-195 71-97 (110)
13 d1qvra2 c.37.1.20 (A:149-535) 25.4 2.5E+02 0.018 27.3 11.9 130 171-303 234-385 (387)
14 d1ivsa1 a.2.7.3 (A:797-862) Va 23.8 1.3E+02 0.0096 22.1 8.2 59 122-180 1-64 (66)
15 d2oa5a1 d.362.1.1 (A:7-102) Un 20.1 31 0.0022 28.8 3.0 25 223-247 4-28 (96)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=73.46 E-value=10 Score=31.78 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743 164 LEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE 200 (679)
Q Consensus 164 L~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~ 200 (679)
|+.-..++..|+..|..|+++...|+..+.++..+..
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~ 39 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777777776655
No 2
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=70.16 E-value=24 Score=28.10 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005743 125 LELDSLRSLLQESKEREFKL 144 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kL 144 (679)
.+|..+...+..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (185)
T d2ap3a1 5 KEIKAYLKQVDKIKDDEEPI 24 (185)
T ss_dssp HHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=64.66 E-value=21 Score=29.12 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=24.1
Q ss_pred HHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743 165 EAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER 201 (679)
Q Consensus 165 ~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q 201 (679)
+...+++-.|..++..+.+....|+.++.++..+.+.
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666667777777777777777766663
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.27 E-value=51 Score=26.64 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743 125 LELDSLRSLLQESKEREFKLQAELSEW 151 (679)
Q Consensus 125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy 151 (679)
.++..|+..+..+......|+.++.|.
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~ 34 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666655
No 5
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.29 E-value=8.1 Score=37.75 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.6
Q ss_pred cChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743 276 TNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315 (679)
Q Consensus 276 ~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~ 315 (679)
.+++|..|+++|.+.+++|++||.. |+.+ ...|+.++
T Consensus 213 ~~~~L~~Qi~~f~~~~~~D~~el~~-~~~~--~~~d~~~~ 249 (343)
T d2bnxa1 213 ENEDMKVQLCVFDEQGDEDFFDLKG-RLDD--IRMEMDDF 249 (343)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHCCCH
T ss_pred CChHHHHHHHHHHHHHHhHHHHHHh-cccc--cccccCCH
Confidence 5899999999999999999999998 6666 33455554
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.41 E-value=40 Score=25.21 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHH
Q 005743 218 NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQV 284 (679)
Q Consensus 218 ~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~Ql 284 (679)
+++.|+.-|.+....|+-+..-+..||+.-. .+.+.++. +|.+.++....+...-+.|..+|
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~----F~~kAP~~-Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKLASPG----FREKAPKE-VVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----HHHHSCTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCChH----HHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888887652 34555554 56556666663333333333333
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=31.32 E-value=1.3e+02 Score=24.51 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHH
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVLELE 161 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~ELq 161 (679)
.+..+++.|+..+..|+.+-..|+..+.+| .-.+++..|.
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888888888888888888888887 2222244444
No 8
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=30.24 E-value=1.3e+02 Score=29.36 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHhH-----hHHHHHHHHHhhhHHH
Q 005743 129 SLRSLLQESKEREFKLQAELSEW-KRNPKVLELERELEAKK-----IENDEIVRRVGMLEDE 184 (679)
Q Consensus 129 ~Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~ELqrqL~~k~-----~Ei~~Lk~kI~sLEaE 184 (679)
.|+..|.+|++|=..|..-| .+ .-++.+.||+.+|..-. .....|.++++.|+..
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~f-Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~i 63 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYL-DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAV 63 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHH
Confidence 35566666666655555332 33 22222666776666422 2444444444444443
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=27.63 E-value=87 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743 219 LEMEVVELRRLNKELQMEKRNLACKFSS 246 (679)
Q Consensus 219 LE~EV~ELRR~NkeLQ~EKreL~~KL~s 246 (679)
|-.++.+|+...++|+.+-.++..+|..
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 10
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.15 E-value=1.6e+02 Score=24.31 Aligned_cols=42 Identities=7% Similarity=0.064 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 005743 265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRD 310 (679)
Q Consensus 265 ~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~ 310 (679)
.+++++. ..|.+|..+|+.|..+|..++..-+. .++++++.|
T Consensus 149 ~a~~~fe---~~~~~~~~~l~~l~~~r~~~~~~~l~-~~~~~~~~f 190 (200)
T d1i4da_ 149 AHRDKYE---KLRGDVAIKLKFLEENKIKVMHKQLL-LFHNAVSAY 190 (200)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3455555 45679999999999999988876554 567776543
No 11
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.69 E-value=1.2e+02 Score=26.77 Aligned_cols=8 Identities=0% Similarity=-0.388 Sum_probs=4.3
Q ss_pred CCCCCCcc
Q 005743 37 SKPRSSWG 44 (679)
Q Consensus 37 ~~~~~~~~ 44 (679)
+.+.++|.
T Consensus 27 P~i~~~~~ 34 (300)
T d1f5na1 27 PCMENAVL 34 (300)
T ss_dssp CBHHHHHH
T ss_pred CChhHHHH
Confidence 34445676
No 12
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=25.99 E-value=1.5e+02 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743 169 IENDEIVRRVGMLEDEKTSLSEQLAAL 195 (679)
Q Consensus 169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~ 195 (679)
.++..|+.+|..|+++...+++++-++
T Consensus 71 ~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 71 ARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655443
No 13
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=25.39 E-value=2.5e+02 Score=27.32 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhhhccc--hhhhhHHHHHHHHHHHHHHHH----------H
Q 005743 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAINMGS--SSSQNLEMEVVELRRLNKELQ----------M 235 (679)
Q Consensus 171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q---~ee~~k~d~e~e--~~l~~LE~EV~ELRR~NkeLQ----------~ 235 (679)
|++|..-.+...-+....-+++.....-..| +.++++++.... .++.+++.+..+|+.....|+ .
T Consensus 234 idlld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~ 313 (387)
T d1qvra2 234 IDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 313 (387)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh-------chHHHHHHHHH
Q 005743 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL-------NEVEELAYLRW 303 (679)
Q Consensus 236 EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re-------~dvEELvylRw 303 (679)
+-++|..+|+.+...+......-.-+..+ +-.+..+..--..+....+.+..... .++.+.|- +|
T Consensus 314 ~i~~Lk~~Le~lr~~le~A~r~gd~e~Aa--eL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVS-rW 385 (387)
T d1qvra2 314 KLREAQHRLDEVRREIELAERQYDLNRAA--ELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVS-RW 385 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHH--HHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHH--HHhhchHHHHHHHHHHHHHHhcCCCCCcCccCHHHHHHHHH-hh
No 14
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.78 E-value=1.3e+02 Score=22.13 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-hhchh--HHHHHHHHHHhHhHHHHHHHHHhh
Q 005743 122 DLFLELDSLRSLLQESKEREFKLQAELSE--W-KRNPK--VLELERELEAKKIENDEIVRRVGM 180 (679)
Q Consensus 122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlE--y-KEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~s 180 (679)
|.+.|+.+|...+..++..-.+++..|.- | .--.. |.+-+..|..-..++..|...|..
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999998888888888873 3 22222 444444444444555555555543
No 15
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=20.06 E-value=31 Score=28.76 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743 223 VVELRRLNKELQMEKRNLACKFSSM 247 (679)
Q Consensus 223 V~ELRR~NkeLQ~EKreL~~KL~sA 247 (679)
|+||-....+||+||+.|..+|-..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~ 28 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSS 28 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778888899999999999999873
Done!