Query 005744
Match_columns 679
No_of_seqs 483 out of 4312
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 13:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.6E-60 9.9E-65 525.5 19.4 459 3-491 305-787 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.8E-52 2.1E-56 485.0 37.3 542 3-613 339-911 (1153)
3 PLN00113 leucine-rich repeat r 100.0 9.7E-31 2.1E-35 308.3 22.6 427 209-664 92-564 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.9E-30 4.2E-35 305.8 23.5 186 447-666 404-590 (968)
5 PLN03210 Resistant to P. syrin 99.9 1.1E-25 2.3E-30 265.4 26.0 444 126-609 469-944 (1153)
6 KOG4194 Membrane glycoprotein 99.9 1.7E-27 3.6E-32 238.7 6.9 386 205-671 47-439 (873)
7 KOG4194 Membrane glycoprotein 99.9 7.8E-26 1.7E-30 226.8 6.9 336 208-568 76-426 (873)
8 KOG0444 Cytoskeletal regulator 99.9 3.4E-27 7.3E-32 238.0 -3.2 341 210-612 32-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 1.6E-26 3.5E-31 233.1 -3.5 347 208-616 5-359 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 7.2E-27 1.6E-31 224.3 -6.4 413 212-667 47-546 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 8E-26 1.7E-30 217.2 -5.4 355 207-606 88-539 (565)
12 KOG0618 Serine/threonine phosp 99.9 6.9E-24 1.5E-28 224.2 -1.1 399 212-659 23-487 (1081)
13 PF00931 NB-ARC: NB-ARC domain 99.8 7E-21 1.5E-25 192.2 3.9 133 7-141 149-285 (287)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-21 2.9E-26 207.1 -3.4 342 209-575 44-446 (1081)
15 KOG0617 Ras suppressor protein 99.7 3.1E-19 6.6E-24 152.4 -3.8 167 222-400 23-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.7 1.9E-15 4.2E-20 165.9 17.0 244 200-485 212-456 (788)
17 KOG0617 Ras suppressor protein 99.6 5.3E-18 1.2E-22 144.9 -4.5 153 207-363 30-186 (264)
18 PRK15370 E3 ubiquitin-protein 99.6 5.1E-15 1.1E-19 163.7 13.9 245 211-485 179-426 (754)
19 PRK15387 E3 ubiquitin-protein 99.6 7.8E-15 1.7E-19 161.2 15.0 259 210-548 201-460 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.6 1E-14 2.2E-19 163.9 12.0 279 221-562 512-798 (889)
21 PRK15370 E3 ubiquitin-protein 99.6 7.4E-15 1.6E-19 162.5 10.3 235 199-459 188-427 (754)
22 KOG4237 Extracellular matrix p 99.5 3.2E-16 7E-21 151.4 -1.9 143 195-361 52-199 (498)
23 KOG4237 Extracellular matrix p 99.5 6.8E-16 1.5E-20 149.2 -3.3 258 198-485 76-357 (498)
24 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.9E-18 139.5 -3.0 189 198-400 59-253 (722)
25 cd00116 LRR_RI Leucine-rich re 99.2 5.3E-12 1.1E-16 129.7 2.6 123 211-334 24-174 (319)
26 cd00116 LRR_RI Leucine-rich re 99.2 6.6E-12 1.4E-16 129.0 3.2 158 230-393 21-205 (319)
27 PF14580 LRR_9: Leucine-rich r 99.1 8.8E-11 1.9E-15 106.0 5.4 120 210-332 19-147 (175)
28 KOG0532 Leucine-rich repeat (L 99.1 3.8E-12 8.3E-17 129.1 -3.8 189 213-415 53-246 (722)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3E-15 104.8 5.3 128 255-388 17-147 (175)
30 KOG1259 Nischarin, modulator o 99.0 9.6E-11 2.1E-15 109.8 -0.2 184 207-399 211-417 (490)
31 KOG1259 Nischarin, modulator o 98.9 8.7E-11 1.9E-15 110.1 -1.1 128 231-363 283-412 (490)
32 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.4E-14 115.8 5.7 168 231-410 115-284 (394)
33 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.4E-14 113.9 6.3 170 255-434 114-288 (394)
34 KOG4341 F-box protein containi 98.8 1.6E-10 3.4E-15 113.5 -5.5 83 258-340 139-231 (483)
35 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.2E-14 107.4 1.2 202 207-410 118-333 (505)
36 KOG3207 Beta-tubulin folding c 98.6 5.4E-09 1.2E-13 103.5 0.4 181 207-394 143-339 (505)
37 PLN03150 hypothetical protein; 98.6 8.3E-08 1.8E-12 106.4 9.3 103 258-361 419-526 (623)
38 KOG4341 F-box protein containi 98.6 5.2E-10 1.1E-14 109.9 -9.0 291 280-610 138-441 (483)
39 PF13855 LRR_8: Leucine rich r 98.5 7.3E-08 1.6E-12 71.3 4.0 58 233-291 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.5 1E-07 2.2E-12 70.5 4.2 58 257-314 1-61 (61)
41 PLN03150 hypothetical protein; 98.4 4E-07 8.7E-12 101.1 8.3 104 281-392 419-526 (623)
42 KOG0531 Protein phosphatase 1, 98.4 2.9E-08 6.3E-13 105.2 -1.7 170 212-396 74-247 (414)
43 KOG0531 Protein phosphatase 1, 98.4 4E-08 8.8E-13 104.1 -1.2 128 230-362 70-198 (414)
44 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.7E-13 106.8 -6.1 127 257-393 164-291 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 3.5E-08 7.5E-13 92.9 -4.0 65 471-543 310-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.2 5.4E-08 1.2E-12 102.2 -4.8 124 281-416 165-292 (1096)
47 KOG3665 ZYG-1-like serine/thre 98.2 4.4E-07 9.6E-12 100.3 2.0 126 208-334 120-259 (699)
48 KOG2120 SCF ubiquitin ligase, 98.2 2.6E-08 5.6E-13 93.8 -6.5 175 210-391 185-373 (419)
49 KOG1909 Ran GTPase-activating 98.1 5E-07 1.1E-11 87.4 -0.2 86 230-315 28-133 (382)
50 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6.1E-11 57.4 3.5 37 258-294 2-38 (44)
51 KOG3665 ZYG-1-like serine/thre 98.0 1.4E-06 3.1E-11 96.3 1.5 81 279-360 147-230 (699)
52 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.6E-10 54.3 4.2 32 303-334 2-33 (44)
53 KOG1909 Ran GTPase-activating 97.9 8.7E-07 1.9E-11 85.8 -2.3 183 209-394 91-311 (382)
54 KOG4579 Leucine-rich repeat (L 97.9 1E-06 2.2E-11 73.6 -1.9 108 212-320 29-141 (177)
55 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 8.9E-10 68.7 5.4 62 254-315 61-126 (233)
56 PRK15386 type III secretion pr 97.7 7E-05 1.5E-09 76.4 7.5 149 471-669 49-200 (426)
57 PRK15386 type III secretion pr 97.7 0.00014 3E-09 74.3 9.4 131 209-360 51-187 (426)
58 KOG1644 U2-associated snRNP A' 97.7 5.6E-05 1.2E-09 67.9 5.4 103 209-312 41-150 (233)
59 KOG4579 Leucine-rich repeat (L 97.7 4.5E-06 9.7E-11 69.8 -1.7 111 232-344 27-141 (177)
60 KOG2982 Uncharacterized conser 97.6 1.4E-05 3.1E-10 75.7 -0.1 81 254-334 68-155 (418)
61 KOG2982 Uncharacterized conser 97.5 2.7E-05 5.8E-10 73.9 -0.2 65 473-545 198-262 (418)
62 KOG2123 Uncharacterized conser 97.1 2.4E-05 5.2E-10 73.5 -4.3 82 279-362 18-100 (388)
63 KOG2739 Leucine-rich acidic nu 96.8 0.00056 1.2E-08 64.4 1.8 61 255-315 63-129 (260)
64 KOG1947 Leucine rich repeat pr 96.8 0.00027 5.9E-09 77.1 -0.8 92 471-568 240-331 (482)
65 COG5238 RNA1 Ran GTPase-activa 96.7 0.001 2.2E-08 62.6 2.9 81 254-334 27-129 (388)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00081 1.8E-08 63.3 2.2 59 256-315 42-104 (260)
67 KOG2123 Uncharacterized conser 96.6 0.00013 2.9E-09 68.6 -3.7 96 232-331 19-123 (388)
68 COG5238 RNA1 Ran GTPase-activa 96.3 0.0019 4E-08 61.0 1.8 41 275-315 87-133 (388)
69 KOG3864 Uncharacterized conser 96.3 0.0011 2.4E-08 59.8 0.1 69 498-572 122-190 (221)
70 KOG1947 Leucine rich repeat pr 96.2 0.0015 3.2E-08 71.3 0.8 120 446-573 187-310 (482)
71 PF00560 LRR_1: Leucine Rich R 96.1 0.0022 4.9E-08 35.9 0.9 21 303-323 1-21 (22)
72 PF00560 LRR_1: Leucine Rich R 96.0 0.0028 6.1E-08 35.5 0.9 21 258-278 1-21 (22)
73 PF13306 LRR_5: Leucine rich r 95.4 0.044 9.4E-07 47.4 6.7 101 252-358 7-111 (129)
74 PF13306 LRR_5: Leucine rich r 95.4 0.052 1.1E-06 46.9 7.1 116 230-353 10-129 (129)
75 PF13504 LRR_7: Leucine rich r 95.4 0.0082 1.8E-07 31.1 1.2 17 648-664 1-17 (17)
76 KOG3864 Uncharacterized conser 95.4 0.0025 5.4E-08 57.7 -1.3 71 528-610 121-191 (221)
77 PF13504 LRR_7: Leucine rich r 94.6 0.026 5.6E-07 29.2 1.6 16 303-318 2-17 (17)
78 KOG0473 Leucine-rich repeat pr 92.9 0.0032 7E-08 58.0 -6.1 58 256-313 64-122 (326)
79 smart00370 LRR Leucine-rich re 92.4 0.07 1.5E-06 31.2 1.2 23 647-669 1-23 (26)
80 smart00369 LRR_TYP Leucine-ric 92.4 0.07 1.5E-06 31.2 1.2 23 647-669 1-23 (26)
81 KOG0473 Leucine-rich repeat pr 91.6 0.005 1.1E-07 56.8 -6.5 83 253-335 38-121 (326)
82 smart00370 LRR Leucine-rich re 91.2 0.19 4.2E-06 29.3 2.2 21 301-321 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 91.2 0.19 4.2E-06 29.3 2.2 21 301-321 1-21 (26)
84 PRK04841 transcriptional regul 90.3 0.92 2E-05 53.9 8.8 150 9-187 176-332 (903)
85 PRK00080 ruvB Holliday junctio 83.2 24 0.00052 36.1 13.4 52 8-60 173-224 (328)
86 TIGR00635 ruvB Holliday juncti 82.0 21 0.00046 36.0 12.4 53 7-60 151-203 (305)
87 smart00364 LRR_BAC Leucine-ric 80.1 0.95 2.1E-05 26.3 1.0 18 648-665 2-19 (26)
88 smart00367 LRR_CC Leucine-rich 80.0 1.1 2.3E-05 26.1 1.2 17 594-610 1-17 (26)
89 KOG4308 LRR-containing protein 79.6 0.022 4.7E-07 60.8 -10.7 178 212-394 89-303 (478)
90 TIGR03015 pepcterm_ATPase puta 77.3 9.9 0.00022 37.5 8.1 71 7-77 184-266 (269)
91 smart00365 LRR_SD22 Leucine-ri 70.9 3.5 7.5E-05 24.1 1.7 17 301-317 1-17 (26)
92 PF13516 LRR_6: Leucine Rich r 55.7 8.3 0.00018 21.7 1.4 12 303-314 3-14 (24)
93 smart00368 LRR_RI Leucine rich 50.4 12 0.00027 22.1 1.6 13 258-270 3-15 (28)
94 KOG3763 mRNA export factor TAP 36.0 13 0.00029 39.7 0.3 67 442-509 239-309 (585)
95 PRK06893 DNA replication initi 31.7 1.1E+02 0.0025 29.2 6.0 51 5-56 151-201 (229)
96 KOG3763 mRNA export factor TAP 26.6 32 0.00069 36.9 1.2 62 254-315 215-283 (585)
97 PF07725 LRR_3: Leucine Rich R 21.1 58 0.0013 17.7 1.0 17 650-666 2-18 (20)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-60 Score=525.50 Aligned_cols=459 Identities=26% Similarity=0.348 Sum_probs=345.0
Q ss_pred CCCCCCceeccCCCHHHHHHHHHHHhCCC--CCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCC-ChHHHHHHHHHhhc
Q 005744 3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSN 79 (679)
Q Consensus 3 ~~~~~~~~~~~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~-~~~~W~~~~~~l~~ 79 (679)
+|+++..+++++|+++|||+||+++||.. ..+++++++|+++|++|+|+|||++++|+.|+.| +.++|+++.+.+.+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 48999999999999999999999999954 3445699999999999999999999999999988 88899999999998
Q ss_pred cCCCcccccccc-cceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 005744 80 SNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (679)
Q Consensus 80 ~~~~~~~~~~~~-~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L 158 (679)
....+..++.+. +++|++|||+||.+ +|.||+|||+||+||+|+++++|..|+||||+++.+..+.+++.+++|+.+|
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 866666666655 89999999999966 9999999999999999999999999999999998766678899999999999
Q ss_pred HhccccccCC---CCCceEehhhHHHHHHHHHh-----cccEeEEecccchhhhhh-hhcCCCeEEEccCCCcccCCccc
Q 005744 159 KSASLLFDGD---SEDHAKMHRIIHAIAVSIAA-----EKLLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERL 229 (679)
Q Consensus 159 ~~~~~~~~~~---~~~~~~mhdli~~l~~~~~~-----~e~~~~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~l~~~~ 229 (679)
+++++++..+ +..+|+|||++||+|.++++ +++ ..+..+......|+ ..+..+|++++.++.+..++...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 9999998765 45789999999999999999 666 33343334444555 55678999999999999999999
Q ss_pred CCcceeeeeeccCCc-ccCCCchhhcCCCCccEEEeCCCc-CCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcE
Q 005744 230 GFLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEI 306 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~ 306 (679)
.+++|++|.+.+|.. ...++..+|..++.||+||+++|. +.++|++|+.|.|||||+++++.+.. |.++++|+.|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 999999999999873 457888889999999999999875 78999999999999999999999998 999999999999
Q ss_pred EEecCC-CCCccchhhhcCCCCCEEcccCCc-cccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCc
Q 005744 307 LSLKHS-SIEQLPREIGQLTCLKLLDLSNCS-KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (679)
Q Consensus 307 L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~-~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 384 (679)
|++..+ .+..+|..+..|.+||+|.+.... ..+..-...+.++++|+.+.+..... ..+..+..++.|+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---------~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---------LLLEDLLGMTRLR 693 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---------HhHhhhhhhHHHH
Confidence 999988 445556556669999999887632 11111111133444444444322211 1223333444443
Q ss_pred ----eEEeecCCCccCCccc-cccccceeEEEeCCcccCCC-CCCCcceEEecCCCcceechhHHHHhhccccccccccc
Q 005744 385 ----TLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSD-GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELA 458 (679)
Q Consensus 385 ----~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 458 (679)
.+.+.++........+ .+.+|+.|.+..+...+... ....... ...++++.++.+.+|.
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~---------------~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV---------------LLCFPNLSKVSILNCH 758 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch---------------hhhHHHHHHHHhhccc
Confidence 2222222323333333 66777777776665442111 0000000 0014566666666666
Q ss_pred CcccccccccchhhccccceEeeecCCCeeEEE
Q 005744 459 GFKNVVHELDDEEGFARLRHLHVHNGPEILHIL 491 (679)
Q Consensus 459 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 491 (679)
....+.. . .-.|+|+.|.+..|..++.+.
T Consensus 759 ~~r~l~~-~---~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 759 MLRDLTW-L---LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccch-h---hccCcccEEEEecccccccCC
Confidence 5544332 2 335788888888887666543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.8e-52 Score=485.04 Aligned_cols=542 Identities=20% Similarity=0.280 Sum_probs=344.9
Q ss_pred CCCCCCceeccCCCHHHHHHHHHHHhCCC-CCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccC
Q 005744 3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS-AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSN 81 (679)
Q Consensus 3 ~~~~~~~~~~~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~ 81 (679)
.++++++|+|+.|+++|||+||+++||+. .+++++++++++||++|+|+||||+++|+.|++++..+|+++++++.+..
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 46788999999999999999999999954 45667999999999999999999999999999999999999999987654
Q ss_pred CCcccccccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhc
Q 005744 82 PRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSA 161 (679)
Q Consensus 82 ~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~ 161 (679)
.. ++..+|++||++|+.++.|.||+++|+||.++.+ +.+..|.|.+.+... .-++.|+++
T Consensus 419 ~~------~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~~L~~k 478 (1153)
T PLN03210 419 DG------KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLKNLVDK 478 (1153)
T ss_pred cH------HHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChHHHHhc
Confidence 32 2388999999999874479999999999998654 346778887655321 137789999
Q ss_pred cccccCCCCCceEehhhHHHHHHHHHhccc------EeEEecccchhhhhh--hhcCCCeEEEccCCCcccCC--c-cc-
Q 005744 162 SLLFDGDSEDHAKMHRIIHAIAVSIAAEKL------LFNIQNVADLKEELD--KIDEAPTAISIPFRGIYELP--E-RL- 229 (679)
Q Consensus 162 ~~~~~~~~~~~~~mhdli~~l~~~~~~~e~------~~~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~--~-~~- 229 (679)
++++..+ ..++|||++|+||+++++++. .+.+... .+..... ....+++.+.+....+.++. . .+
T Consensus 479 sLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 479 SLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred CCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 9997643 469999999999999987653 1222221 1222211 23345566665544443221 1 11
Q ss_pred CCcceeeeeeccCC------cccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCC
Q 005744 230 GFLKLKLFLFFTEN------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLK 302 (679)
Q Consensus 230 ~~~~L~~L~l~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~ 302 (679)
++++|+.|.+..+. ....+|.++..-..+||+|++.++.++.+|..+ ...+|+.|++++|.+.. +..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 55666666554332 112234333211233555555555555555444 23445555555544444 44444455
Q ss_pred CCcEEEecCC-CCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCC
Q 005744 303 KLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS 381 (679)
Q Consensus 303 ~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 381 (679)
+|++|+++++ .+..+|. ++.+++|++|++.+|..+..+|.. ++++++|+.|++++|......+ .. .+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-------~~-i~l~ 704 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-------TG-INLK 704 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-------Cc-CCCC
Confidence 5555555443 3344442 444445555555554444444443 4444555555544442211111 00 1334
Q ss_pred CCceEEeecCC-CccCCccccccccceeEEEeCCcccC--CCCCCCcceEEecCCCc-------ceechhHHHHhhcccc
Q 005744 382 RLTTLEVHIPD-AQVMPQDLVFVELERFRICIGDVWSW--SDGYETSKTLKLQLNNS-------TYLGYGMKMLLKRTED 451 (679)
Q Consensus 382 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~L~~~~~-------~~~~~~~~~~l~~L~~ 451 (679)
+|+.|+++++. +..+|.. ..+|+.|++..+.+... ...+++|+.|.+..... ...+......+++|+.
T Consensus 705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 44444444332 1122211 22344444432221110 01123333333332111 1111122223578999
Q ss_pred cccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCcccc
Q 005744 452 LHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSF 531 (679)
Q Consensus 452 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l 531 (679)
|++++|.....+|..+ +++++|+.|++++|..++.++.. ..+++|+.|++++|.++..++. ..
T Consensus 783 L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~L~~~p~----------~~ 845 (1153)
T PLN03210 783 LFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSRLRTFPD----------IS 845 (1153)
T ss_pred eeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCccccccc----------cc
Confidence 9999998888899888 88999999999999988887643 2689999999999999887642 34
Q ss_pred CCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCcccc
Q 005744 532 SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSS 611 (679)
Q Consensus 532 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l 611 (679)
++|+.|++++ +.++.+|. .+..+++|+.|++.+|++++.++. .+..+++|+.+++.+|++|+.+
T Consensus 846 ~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~-------------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 846 TNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL-------------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc-------------ccccccCCCeeecCCCcccccc
Confidence 6899999988 57888753 468899999999999999998875 2447899999999999999876
Q ss_pred cc
Q 005744 612 GF 613 (679)
Q Consensus 612 ~~ 613 (679)
+.
T Consensus 910 ~l 911 (1153)
T PLN03210 910 SW 911 (1153)
T ss_pred cC
Confidence 54
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.7e-31 Score=308.31 Aligned_cols=427 Identities=17% Similarity=0.138 Sum_probs=184.3
Q ss_pred cCCCeEEEccCCCcc-cCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cCCccccCCcCCCE
Q 005744 209 DEAPTAISIPFRGIY-ELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRT 284 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 284 (679)
.++++.|++++|.+. .+|... .+++|++|++++|.+.+.+|. +.+++|++|++++|.+. .+|..++++++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 445555555555542 344332 445555555555554444443 23444555555555443 34444555555555
Q ss_pred EEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744 285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (679)
Q Consensus 285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 361 (679)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence 5555544433 444445555555555554443 34444445555555555443222233333 4444455555544443
Q ss_pred ccceeccCCcCChhhhhcCCCCceEEeecCCCc-cCCccc-cccccceeEEEeCCc----ccCCCCCCCcceEEecCCCc
Q 005744 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNS 435 (679)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~L~~~~~ 435 (679)
+.. ..+..+.++++|+.|++++|.+. .+|..+ .+.+|+.|++..+.. +.++..+++|+.|+++++..
T Consensus 248 l~~-------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 248 LTG-------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ecc-------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 321 11223334444444444444332 222222 333444444432221 11223333444444433322
Q ss_pred ce-echhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeC---------------------
Q 005744 436 TY-LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNS--------------------- 493 (679)
Q Consensus 436 ~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--------------------- 493 (679)
.. .|.++.. +++|+.|++++|.....+|..+ +.+++|+.|++++|.....++..
T Consensus 321 ~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 321 TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CCcCChhHhc-CCCCCEEECcCCCCcCcCChHH---hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 21 1222222 3334444444433333333333 33333344443333211111000
Q ss_pred CCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744 494 DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL 573 (679)
Q Consensus 494 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 573 (679)
......+++|+.|++.+|.--..++ .....+++|+.|+++++ .+....+. ....+++|+.|++++|.-...
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELP-------SEFTKLPLVYFLDISNN-NLQGRINS-RKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECC-------hhHhcCCCCCEEECcCC-cccCccCh-hhccCCCCcEEECcCceeeee
Confidence 0111334455555555432111111 11234455555555543 23332221 123445555555555533222
Q ss_pred hhccccc----------cccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccc
Q 005744 574 IVGKESE----------NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE 643 (679)
Q Consensus 574 l~~~~~~----------~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~ 643 (679)
++..... ..........+..+++|++|++++|.-...+|.. +..+.+++.+....+.-...++..
T Consensus 468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-----LSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-----HcCccCCCEEECCCCcccccCChh
Confidence 2211000 0000000113456778888888776433344433 345566777777776655556555
Q ss_pred cccCCCcceeecccccccc-cc
Q 005744 644 RVVFPSLKKLKLSSINVEK-IW 664 (679)
Q Consensus 644 ~~~~p~L~~L~l~~~~l~~-l~ 664 (679)
...+++|+.|++++|++.. +|
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred HhCcccCCEEECCCCcccccCC
Confidence 6678899999999997764 44
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.9e-30 Score=305.80 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=109.3
Q ss_pred hcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCC
Q 005744 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNE 526 (679)
Q Consensus 447 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~ 526 (679)
++|+.|++.+|.....+|..+ ..+++|+.|++++|.....++ .....+++|+.|++++|.-...++.
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~~~~~~p~------- 470 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEF---TKLPLVYFLDISNNNLQGRIN---SRKWDMPSLQMLSLARNKFFGGLPD------- 470 (968)
T ss_pred CCCCEEECcCCEeeeECChhH---hcCCCCCEEECcCCcccCccC---hhhccCCCCcEEECcCceeeeecCc-------
Confidence 444444444444333333333 344444455544443211111 1113455666666666433222221
Q ss_pred CccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744 527 DDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 527 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp 606 (679)
....++|+.|++++| ++....+ ..+..+++|+.|++++|.-...++. .+..+++|++|+|++|.
T Consensus 471 -~~~~~~L~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-------------~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 471 -SFGSKRLENLDLSRN-QFSGAVP-RKLGSLSELMQLKLSENKLSGEIPD-------------ELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred -ccccccceEEECcCC-ccCCccC-hhhhhhhccCEEECcCCcceeeCCh-------------HHcCccCCCEEECCCCc
Confidence 113467777777775 3443323 2456788888888888744444432 45689999999999976
Q ss_pred CccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccc-cccCC
Q 005744 607 QLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVE-KIWLN 666 (679)
Q Consensus 607 ~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~-~l~~~ 666 (679)
-...++.. +..+++++.+....+.-...+|.....+++|+.|++++|++. .+|..
T Consensus 535 l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 535 LSGQIPAS-----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ccccCChh-----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 44444433 345677888888887776677777778899999999999766 46644
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.1e-25 Score=265.42 Aligned_cols=444 Identities=18% Similarity=0.240 Sum_probs=314.4
Q ss_pred HhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhccccccC---CCCCceEehhhHHHHHHHHHhcccE----eEEecc
Q 005744 126 DDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDG---DSEDHAKMHRIIHAIAVSIAAEKLL----FNIQNV 198 (679)
Q Consensus 126 ~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~mhdli~~l~~~~~~~e~~----~~~~~~ 198 (679)
+..++.+++.++|+.... ...||+++++++..-..++. ++.....-+.-+.+........+.+ +.....
T Consensus 469 ~~~l~~L~~ksLi~~~~~----~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRED----IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred hhChHHHHhcCCEEEcCC----eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence 334777888899875432 24677777776533222221 2222333343344433322222221 111111
Q ss_pred cchhhhhh--hhcCCCeEEEccCCCc-------ccCCccc-CC-cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCC
Q 005744 199 ADLKEELD--KIDEAPTAISIPFRGI-------YELPERL-GF-LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF 267 (679)
Q Consensus 199 ~~~~~~~~--~~~~~l~~l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 267 (679)
..+..-.. ..+.+++.|.+..+.. ..+|..+ .+ ++||.|.+.++.+. .+|..+ ...+|+.|+++++
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s 621 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGS 621 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCc
Confidence 11100011 5578888888866542 2355555 33 56999999988764 788775 5789999999999
Q ss_pred cCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCC-CCCccchhhhcCCCCCEEcccCCccccccCccc
Q 005744 268 RFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV 345 (679)
Q Consensus 268 ~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~ 345 (679)
.+..+|..+..+++|++|+++++.... ++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~- 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG- 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-
Confidence 999999999999999999999886444 667999999999999998 78899999999999999999999999999986
Q ss_pred ccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCC---ccc-----
Q 005744 346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD---VWS----- 417 (679)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~----- 417 (679)
+ ++++|+.|++++|......+ ...++|+.|+++++.+..+|..+.+++|+.|.+.... .+.
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p----------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFP----------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccc----------cccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 3 89999999999985432111 1246789999999999999988888889888875422 111
Q ss_pred ---CCCCCCCcceEEecCCCc-ceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeC
Q 005744 418 ---WSDGYETSKTLKLQLNNS-TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNS 493 (679)
Q Consensus 418 ---~~~~~~~l~~L~L~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 493 (679)
....+++|+.|.|+++.. ..+|.++.. +++|+.|++++|..++.+|... .+++|+.|++++|..+..++.
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~- 843 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD- 843 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc-
Confidence 122356899999998754 446777776 7999999999999888888754 589999999999998776543
Q ss_pred CCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744 494 DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL 573 (679)
Q Consensus 494 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 573 (679)
..++|+.|++.+ +.++.+|.. .+.+++|+.|++.+|++++.++. ....+++|+.+++++|++|+.
T Consensus 844 -----~~~nL~~L~Ls~-n~i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 844 -----ISTNISDLNLSR-TGIEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred -----cccccCEeECCC-CCCccChHH-------HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccc
Confidence 357899999998 678776543 56899999999999999999864 356889999999999999987
Q ss_pred hhccccccccCCCCccccccccccceeeccCCCCcc
Q 005744 574 IVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLT 609 (679)
Q Consensus 574 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~ 609 (679)
+...................+|....+.+.+|.+|.
T Consensus 909 ~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 909 ASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 643211100000000011245566666777777665
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-27 Score=238.70 Aligned_cols=386 Identities=19% Similarity=0.209 Sum_probs=285.4
Q ss_pred hhhhcCCCeEEEccCCCcccCCcc----cCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCc
Q 005744 205 LDKIDEAPTAISIPFRGIYELPER----LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280 (679)
Q Consensus 205 ~~~~~~~l~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~ 280 (679)
|....-..+-++.+++.++.+... +-.+.-++|++++|.+. .+.-.+|.++++|+.+++.+|.++.+|...+...
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 444455677788888877665322 13456678999888877 4555566889999999999999999998777778
Q ss_pred CCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744 281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (679)
Q Consensus 281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 357 (679)
||+.|+|.+|.|.. -+.+..++.|+.|||+.|.|+++|.. +..=.++++|+|++ +.++.+..+.|..+.+|-+|.+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeec
Confidence 89999999998887 57788888999999999988888753 55557888999988 7888888887888888888888
Q ss_pred cCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcce
Q 005744 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY 437 (679)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~ 437 (679)
+.|.++. -....+++|++|+.|++..|.+.... +..+..+++++.++|..|....
T Consensus 205 srNritt-------Lp~r~Fk~L~~L~~LdLnrN~irive------------------~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 205 SRNRITT-------LPQRSFKRLPKLESLDLNRNRIRIVE------------------GLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccCcccc-------cCHHHhhhcchhhhhhccccceeeeh------------------hhhhcCchhhhhhhhhhcCccc
Confidence 8887653 23356777888888888877654321 1234455666667777777777
Q ss_pred echhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccccc
Q 005744 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV 517 (679)
Q Consensus 438 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 517 (679)
+.++++..+.++++|++..|.....--.++ -+++.|+.|+++.|. +..+-. ..+ ...++|+.|+++. ++++++
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~rih~-d~W-sftqkL~~LdLs~-N~i~~l 332 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRIHI-DSW-SFTQKLKELDLSS-NRITRL 332 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchhh-hheeec-chh-hhcccceeEeccc-cccccC
Confidence 777777778888999988877554444556 568889999998885 333211 111 3568999999998 888888
Q ss_pred ccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcccccccccc
Q 005744 518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL 597 (679)
Q Consensus 518 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L 597 (679)
+.+.+. .+..|++|.++. +++..+ ....+..+++|++|+++++ .+.-.... ....+..+|+|
T Consensus 333 ~~~sf~------~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N-~ls~~IED---------aa~~f~gl~~L 394 (873)
T KOG4194|consen 333 DEGSFR------VLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSN-ELSWCIED---------AAVAFNGLPSL 394 (873)
T ss_pred ChhHHH------HHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCC-eEEEEEec---------chhhhccchhh
Confidence 766544 788899999988 788888 5567888999999999876 33322211 11256689999
Q ss_pred ceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCcccc
Q 005744 598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAI 671 (679)
Q Consensus 598 ~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~ 671 (679)
+.|.+.+ ++|++++... ...|++|+.|++.+|.+.+|-+++|..+
T Consensus 395 rkL~l~g-Nqlk~I~krA----------------------------fsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 395 RKLRLTG-NQLKSIPKRA----------------------------FSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred hheeecC-ceeeecchhh----------------------------hccCcccceecCCCCcceeecccccccc
Confidence 9999998 6888877532 2356899999999999999988888643
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=7.8e-26 Score=226.80 Aligned_cols=336 Identities=18% Similarity=0.240 Sum_probs=180.9
Q ss_pred hcCCCeEEEccCCCcccCCcc--cCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCE
Q 005744 208 IDEAPTAISIPFRGIYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRT 284 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~ 284 (679)
.+...+.|++++|++..+... .++++|+.+.+.+|.+. .+|... +...+|+.|+|.+|.|+++ .+++..++.||.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 345566677777766554433 26666666666666654 555522 4445566666666666655 345666666666
Q ss_pred EEcCCcccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744 285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (679)
Q Consensus 285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 361 (679)
|||+.|.+.+ .+++.+-.++++|+|++|.|+.+-. .|..+.+|..|.|+. ++++.+|...|.+|++|+.|++..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence 6666666666 3555555666666666666665543 355666666666666 56666666666666666666666665
Q ss_pred ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCcc----cCCCCCCCcceEEecCCCc
Q 005744 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVW----SWSDGYETSKTLKLQLNNS 435 (679)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~l~~L~L~~~~~ 435 (679)
+... ....+..|.+|+.|.+..|++..+.+.+ .+.++++|++..+.+. .|+-++..|+.|+|+.|..
T Consensus 233 iriv-------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 233 IRIV-------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred eeee-------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 4311 1123445555555566666555555554 5556666665544432 2455555566666655544
Q ss_pred cee--chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccc
Q 005744 436 TYL--GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLIN 513 (679)
Q Consensus 436 ~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 513 (679)
..+ ..|- ..++|+.|++++|....-.+..| ..+..|++|.|+.|. +..+- ...+..+.+|++|++.+ +.
T Consensus 306 ~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf---~~L~~Le~LnLs~Ns-i~~l~--e~af~~lssL~~LdLr~-N~ 376 (873)
T KOG4194|consen 306 QRIHIDSWS--FTQKLKELDLSSNRITRLDEGSF---RVLSQLEELNLSHNS-IDHLA--EGAFVGLSSLHKLDLRS-NE 376 (873)
T ss_pred heeecchhh--hcccceeEeccccccccCChhHH---HHHHHhhhhcccccc-hHHHH--hhHHHHhhhhhhhcCcC-Ce
Confidence 333 2222 23556666665554433333333 445555666665553 22221 12234455566666555 33
Q ss_pred ccccc-cCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccc
Q 005744 514 LEKVC-DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (679)
Q Consensus 514 L~~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (679)
+...- ++..+ ...+++|+.|.+.+ ++++.+ +...+..+++||+|++.++
T Consensus 377 ls~~IEDaa~~----f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 377 LSWCIEDAAVA----FNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred EEEEEecchhh----hccchhhhheeecC-ceeeec-chhhhccCcccceecCCCC
Confidence 33211 11111 22355666666655 456655 2334555666666666554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.4e-27 Score=238.00 Aligned_cols=341 Identities=19% Similarity=0.246 Sum_probs=170.3
Q ss_pred CCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC--cCCccccCCcCCCEEE
Q 005744 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLRTLS 286 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~ 286 (679)
..++.|-+....+..+|+.+ .+.+|++|.+..|++. .+.... +.++.||.+++..|+++ .+|..|..+..|.+||
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 34444444444444444444 4444444444444433 222222 44445555555555443 3455555555555555
Q ss_pred cCCcccCC-cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccc
Q 005744 287 LENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364 (679)
Q Consensus 287 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (679)
|++|++.+ |..+...+++-+|+|++|+|..+|.. +.+|+.|-+|+|++ +.+..+|+. +..|.+|++|.+++|.+..
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 55555544 55555555555555555555555543 23445555555554 445555544 4445555555555543321
Q ss_pred eeccCCcCChhhhhcCCCCceEEeecCCC--ccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhH
Q 005744 365 KVEGQSNASLGELKQLSRLTTLEVHIPDA--QVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGM 442 (679)
Q Consensus 365 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~ 442 (679)
..+..|..++.|+.|.+++++- ..+ +.++..+.+|..++++.+.....|+.+
T Consensus 188 -------fQLrQLPsmtsL~vLhms~TqRTl~N~-------------------Ptsld~l~NL~dvDlS~N~Lp~vPecl 241 (1255)
T KOG0444|consen 188 -------FQLRQLPSMTSLSVLHMSNTQRTLDNI-------------------PTSLDDLHNLRDVDLSENNLPIVPECL 241 (1255)
T ss_pred -------HHHhcCccchhhhhhhcccccchhhcC-------------------CCchhhhhhhhhccccccCCCcchHHH
Confidence 1122333334444444444332 233 334445555666666666666666666
Q ss_pred HHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcc
Q 005744 443 KMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKV 522 (679)
Q Consensus 443 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 522 (679)
.. +++|+.|++++|.. +.+.... +.+.+|+.|+++.|. ++.++. ....+++|+.|.+.+ ++|.- ..+
T Consensus 242 y~-l~~LrrLNLS~N~i-teL~~~~---~~W~~lEtLNlSrNQ-Lt~LP~---avcKL~kL~kLy~n~-NkL~F---eGi 308 (1255)
T KOG0444|consen 242 YK-LRNLRRLNLSGNKI-TELNMTE---GEWENLETLNLSRNQ-LTVLPD---AVCKLTKLTKLYANN-NKLTF---EGI 308 (1255)
T ss_pred hh-hhhhheeccCcCce-eeeeccH---HHHhhhhhhccccch-hccchH---HHhhhHHHHHHHhcc-Ccccc---cCC
Confidence 55 56666666666543 3333222 556666666666664 333322 224566666666655 44432 122
Q ss_pred cCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeec
Q 005744 523 RLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL 602 (679)
Q Consensus 523 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 602 (679)
| +++|.+.+|+.+...+ ++|+-+ |. +++.|+.|+.|.+. |+.|-.+|. +++.+|-|+.|++
T Consensus 309 P--SGIGKL~~Levf~aan-N~LElV-PE-glcRC~kL~kL~L~-~NrLiTLPe-------------aIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 309 P--SGIGKLIQLEVFHAAN-NKLELV-PE-GLCRCVKLQKLKLD-HNRLITLPE-------------AIHLLPDLKVLDL 369 (1255)
T ss_pred c--cchhhhhhhHHHHhhc-cccccC-ch-hhhhhHHHHHhccc-ccceeechh-------------hhhhcCCcceeec
Confidence 2 3456666666666655 455544 32 45666666666665 334555543 4556666666666
Q ss_pred cCCCCccccc
Q 005744 603 QHLPQLTSSG 612 (679)
Q Consensus 603 ~~cp~L~~l~ 612 (679)
++.|+|..-|
T Consensus 370 reNpnLVMPP 379 (1255)
T KOG0444|consen 370 RENPNLVMPP 379 (1255)
T ss_pred cCCcCccCCC
Confidence 6666666433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.6e-26 Score=233.08 Aligned_cols=347 Identities=19% Similarity=0.218 Sum_probs=262.4
Q ss_pred hcCCCeEEEccCCCc--ccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCE
Q 005744 208 IDEAPTAISIPFRGI--YELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT 284 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 284 (679)
.++-+|.+++++|++ ..+|... .++.++.|.+....+. .+|+.. +.+.+|+.|.+++|++.++-..++.|+.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 345678888888888 4577777 7888888888776654 678776 7888888888888888888888888888888
Q ss_pred EEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744 285 LSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (679)
Q Consensus 285 L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 361 (679)
++++.|++.. |..|.+|..|.+|||++|++++.|..+..-+++-.|+|++ +++..+|...+-+|+.|-.|++++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch
Confidence 8888888765 7888888888888888888888888888888888888888 77888888877888888888888886
Q ss_pred ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCC--cceec
Q 005744 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN--STYLG 439 (679)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~--~~~~~ 439 (679)
+. ..+.....+.+|++|.+++|.+..+ +|+ .++.+.+|+.|++++.. ...+|
T Consensus 162 Le--------~LPPQ~RRL~~LqtL~Ls~NPL~hf-------QLr-----------QLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 162 LE--------MLPPQIRRLSMLQTLKLSNNPLNHF-------QLR-----------QLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred hh--------hcCHHHHHHhhhhhhhcCCChhhHH-------HHh-----------cCccchhhhhhhcccccchhhcCC
Confidence 64 4556778888888888887754321 111 12344555556666532 23456
Q ss_pred hhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccccccc
Q 005744 440 YGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCD 519 (679)
Q Consensus 440 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 519 (679)
..+.. +.+|..++++.|. +..+|..+ -.+++|+.|+|++|. ++.+. ...+.-.+|++|+++. +.|+.+|.
T Consensus 216 tsld~-l~NL~dvDlS~N~-Lp~vPecl---y~l~~LrrLNLS~N~-iteL~---~~~~~W~~lEtLNlSr-NQLt~LP~ 285 (1255)
T KOG0444|consen 216 TSLDD-LHNLRDVDLSENN-LPIVPECL---YKLRNLRRLNLSGNK-ITELN---MTEGEWENLETLNLSR-NQLTVLPD 285 (1255)
T ss_pred Cchhh-hhhhhhccccccC-CCcchHHH---hhhhhhheeccCcCc-eeeee---ccHHHHhhhhhhcccc-chhccchH
Confidence 66665 7899999998765 56677777 678999999999985 44432 2335677899999999 88888765
Q ss_pred CcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccce
Q 005744 520 GKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHF 599 (679)
Q Consensus 520 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~ 599 (679)
. ...+++|+.|.+.+ ++|+--...++++.|.+|+++...++ .|+-+|. ++..+++|+.
T Consensus 286 a-------vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE-------------glcRC~kL~k 343 (1255)
T KOG0444|consen 286 A-------VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE-------------GLCRCVKLQK 343 (1255)
T ss_pred H-------HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccccCch-------------hhhhhHHHHH
Confidence 4 56788999999877 56654333357889999999988865 6777764 5668899999
Q ss_pred eeccCCCCccccccCCC
Q 005744 600 LKLQHLPQLTSSGFDLE 616 (679)
Q Consensus 600 L~l~~cp~L~~l~~~~~ 616 (679)
|.+ +|+.|..+|..++
T Consensus 344 L~L-~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 344 LKL-DHNRLITLPEAIH 359 (1255)
T ss_pred hcc-cccceeechhhhh
Confidence 998 4678888887765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=7.2e-27 Score=224.32 Aligned_cols=413 Identities=18% Similarity=0.193 Sum_probs=236.6
Q ss_pred CeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 290 (679)
+..+.+++|.+..+.+.+ .+..+.+|++..|... .+|+++ +.+..+..|++++|.+..+|..++.+..|+.|+.+.|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 445555666665555544 5666666666666655 455554 5566666666666666666666666666666666666
Q ss_pred ccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744 291 LVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (679)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~ 369 (679)
.+.+ +++++.+..|+.|+..+|+++++|.+++.+.+|..|++.+ ++++.+|+..+. ++.|++|+...|...
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~------ 196 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE------ 196 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh------
Confidence 6666 6666666666666666666666666666666666666666 555666655333 666666665555432
Q ss_pred CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc----CCCCCCCcceEEecCCCcceechhHHHH
Q 005744 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS----WSDGYETSKTLKLQLNNSTYLGYGMKML 445 (679)
Q Consensus 370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~L~~~~~~~~~~~~~~~ 445 (679)
..+++++.+.+|..|+++.|++..+|+.-++..|.+|++..+.+.. -...++.+..|+|+.+.....|+.+..
T Consensus 197 --tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl- 273 (565)
T KOG0472|consen 197 --TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL- 273 (565)
T ss_pred --cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-
Confidence 3445556666666666666666666643355555555554443211 233566777788888888888888775
Q ss_pred hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEe---------------------C-------CC--
Q 005744 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILN---------------------S-------DG-- 495 (679)
Q Consensus 446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---------------------~-------~~-- 495 (679)
+.+|++|+++++. +..+|..+ +++ .|+.|.+.||+-- .+.. + ..
T Consensus 274 LrsL~rLDlSNN~-is~Lp~sL---gnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 274 LRSLERLDLSNND-ISSLPYSL---GNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred hhhhhhhcccCCc-cccCCccc---ccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 6889999998875 46677777 777 8888888888721 1000 0 00
Q ss_pred ---c------cccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcc--------------------
Q 005744 496 ---R------VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK-------------------- 546 (679)
Q Consensus 496 ---~------~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-------------------- 546 (679)
. .......+.|.+++ .+++.+|...|. .+.-.-....+++. +++.
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfe----a~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFE----AAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHH----HhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhc
Confidence 0 02233677777777 677777655443 11111122222222 1111
Q ss_pred ---ccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCc----
Q 005744 547 ---HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPT---- 619 (679)
Q Consensus 547 ---~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~---- 619 (679)
++++ ..+..+++|..|+++++ -+.++|.+ +..+-.||.|+|+.. ..+.+|...+.|.
T Consensus 422 n~isfv~-~~l~~l~kLt~L~L~NN-~Ln~LP~e-------------~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 422 NKISFVP-LELSQLQKLTFLDLSNN-LLNDLPEE-------------MGSLVRLQTLNLSFN-RFRMLPECLYELQTLET 485 (565)
T ss_pred Cccccch-HHHHhhhcceeeecccc-hhhhcchh-------------hhhhhhhheeccccc-ccccchHHHhhHHHHHH
Confidence 1212 23455666666666654 45555542 234555666666653 3444443222111
Q ss_pred ---------------ccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCC
Q 005744 620 ---------------NTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNS 667 (679)
Q Consensus 620 ---------------l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~ 667 (679)
+.++..+.++...+ +++.++|+..+...+|+.|+++||.++ .|+.+
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC-CCHHH
Confidence 22333334443332 456677777777888888888888877 66554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=8e-26 Score=217.19 Aligned_cols=355 Identities=23% Similarity=0.274 Sum_probs=191.6
Q ss_pred hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL 285 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 285 (679)
.....+..++.++|++..+|+.+ ...+++.+++++|.+. .+|+++ +.+..|..|+..+|++..+|..++++..|..|
T Consensus 88 g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 88 GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence 44444555555555555555544 4555555555555544 344443 44555555555555555555555555555555
Q ss_pred EcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccc
Q 005744 286 SLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364 (679)
Q Consensus 286 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (679)
++.+|.+.. |+..-+++.|++||...|-++.+|+.++.+.+|..|++.. +++..+|. |+.+..|.+|+++.|++.
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe--f~gcs~L~Elh~g~N~i~- 241 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE--FPGCSLLKELHVGENQIE- 241 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC--CCccHHHHHHHhcccHHH-
Confidence 555555555 4433335555555555555555555555555555555555 45555552 444444444444444332
Q ss_pred eeccCCcCCh-hhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCccc---CCCCCCCcceEEecCCC-----
Q 005744 365 KVEGQSNASL-GELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWS---WSDGYETSKTLKLQLNN----- 434 (679)
Q Consensus 365 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~l~~L~L~~~~----- 434 (679)
... +-++++.+|..|+++.|+++++|+.+ .+.+|+.|+++++++.. .++.+ .|+.|.+.++.
T Consensus 242 -------~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 242 -------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred -------hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence 111 22346667777777777777777766 55566666665554322 22222 23333333322
Q ss_pred ------------------------------------------------------------cceechhHHHH---------
Q 005744 435 ------------------------------------------------------------STYLGYGMKML--------- 445 (679)
Q Consensus 435 ------------------------------------------------------------~~~~~~~~~~~--------- 445 (679)
....|+.++..
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~V 393 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSV 393 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEE
Confidence 22222222110
Q ss_pred ----------------hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecc
Q 005744 446 ----------------LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH 509 (679)
Q Consensus 446 ----------------l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 509 (679)
+..+.+.-+..+..+..+|..+ ..+++|..|++++|. +..++. ..+.+..|+.|+++
T Consensus 394 nfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l---~~l~kLt~L~L~NN~-Ln~LP~---e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 394 NFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL---SQLQKLTFLDLSNNL-LNDLPE---EMGSLVRLQTLNLS 466 (565)
T ss_pred ecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH---Hhhhcceeeecccch-hhhcch---hhhhhhhhheeccc
Confidence 1112111122222333344444 567888888887774 333332 23456668888887
Q ss_pred ccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcc
Q 005744 510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI 589 (679)
Q Consensus 510 ~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~ 589 (679)
. +.++.+|... -....|+.+-.++ +++..+++ +++.++.+|.+|++.++ .+..+|.
T Consensus 467 ~-NrFr~lP~~~-------y~lq~lEtllas~-nqi~~vd~-~~l~nm~nL~tLDL~nN-dlq~IPp------------- 522 (565)
T KOG0472|consen 467 F-NRFRMLPECL-------YELQTLETLLASN-NQIGSVDP-SGLKNMRNLTTLDLQNN-DLQQIPP------------- 522 (565)
T ss_pred c-cccccchHHH-------hhHHHHHHHHhcc-ccccccCh-HHhhhhhhcceeccCCC-chhhCCh-------------
Confidence 7 5665554321 1122344444443 67777744 57889999999999866 7888875
Q ss_pred ccccccccceeeccCCC
Q 005744 590 SGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 590 ~l~~l~~L~~L~l~~cp 606 (679)
.++++.+|++|.|.+.|
T Consensus 523 ~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhccccceeEEEecCCc
Confidence 56799999999999976
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=6.9e-24 Score=224.20 Aligned_cols=399 Identities=21% Similarity=0.261 Sum_probs=234.0
Q ss_pred CeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744 212 PTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~ 289 (679)
+.++++..|.+-..|-.. +.-+|++|+++.|.+. ..|..+ ..+.+|+.|+++.|.+..+|.+++++.+|++|.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 556666666554433211 3444777777776654 566655 667777777777777777777777777777777777
Q ss_pred cccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccc---------------cCCCCCc
Q 005744 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI---------------SNLTRLE 353 (679)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l---------------~~l~~L~ 353 (679)
|.+.. |.++..+++|++||+++|.+..+|.-+..++.+..+..++|..+..++...+ .....++
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT 180 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence 77766 7777777777777777777777777777777777777776433333322110 0011122
Q ss_pred E-EEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCC--------------------ccccccccceeEEEe
Q 005744 354 E-LYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP--------------------QDLVFVELERFRICI 412 (679)
Q Consensus 354 ~-L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------~~~~~~~L~~L~l~~ 412 (679)
+ |++.+|.+. ...+..+.+|+.+....|++..+. ......+|+.+++..
T Consensus 181 ~~ldLr~N~~~----------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 181 HQLDLRYNEME----------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH 250 (1081)
T ss_pred eeeecccchhh----------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch
Confidence 2 333333221 123334444444444333322111 001223344444432
Q ss_pred CC---cccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeE
Q 005744 413 GD---VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH 489 (679)
Q Consensus 413 ~~---~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 489 (679)
+. .++|...+.+++.+....+....+|..+.. ..+|+.|.+..|. ++.+|... ..+.+|++|+|..|. +..
T Consensus 251 n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~-~~~L~~l~~~~ne-l~yip~~l---e~~~sL~tLdL~~N~-L~~ 324 (1081)
T KOG0618|consen 251 NNLSNLPEWIGACANLEALNANHNRLVALPLRISR-ITSLVSLSAAYNE-LEYIPPFL---EGLKSLRTLDLQSNN-LPS 324 (1081)
T ss_pred hhhhcchHHHHhcccceEecccchhHHhhHHHHhh-hhhHHHHHhhhhh-hhhCCCcc---cccceeeeeeehhcc-ccc
Confidence 22 234555555555555555555555555544 3556666655553 34555555 568888888888774 333
Q ss_pred EEeCCC-----------------------ccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcc
Q 005744 490 ILNSDG-----------------------RVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK 546 (679)
Q Consensus 490 ~~~~~~-----------------------~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 546 (679)
+++... ....++.|+.|++.+ +.|++-+... ...|++||.|++++ ++|.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~------l~~~~hLKVLhLsy-NrL~ 396 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPV------LVNFKHLKVLHLSY-NRLN 396 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhh------hccccceeeeeecc-cccc
Confidence 332110 013456677777777 6666543322 45889999999999 7888
Q ss_pred ccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCC
Q 005744 547 HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNP 626 (679)
Q Consensus 547 ~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l 626 (679)
.+ |...+.+++.||+|+++++ +|+.++. .+..++.|++|...+ +.|..+|. +..++.+
T Consensus 397 ~f-pas~~~kle~LeeL~LSGN-kL~~Lp~-------------tva~~~~L~tL~ahs-N~l~~fPe------~~~l~qL 454 (1081)
T KOG0618|consen 397 SF-PASKLRKLEELEELNLSGN-KLTTLPD-------------TVANLGRLHTLRAHS-NQLLSFPE------LAQLPQL 454 (1081)
T ss_pred cC-CHHHHhchHHhHHHhcccc-hhhhhhH-------------HHHhhhhhHHHhhcC-Cceeechh------hhhcCcc
Confidence 88 5567889999999999987 7888874 344777888887765 45666653 2344445
Q ss_pred ccccCCCCCCCccCc-cccccCCCcceeeccccc
Q 005744 627 GIIAEGDPKDFTSLF-NERVVFPSLKKLKLSSIN 659 (679)
Q Consensus 627 ~~~~~~~~~~l~~~~-~~~~~~p~L~~L~l~~~~ 659 (679)
+.+... |++++... +....-|+|+.|+++||.
T Consensus 455 ~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred eEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 555443 34443332 223334799999999983
No 13
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.81 E-value=7e-21 Score=192.24 Aligned_cols=133 Identities=32% Similarity=0.510 Sum_probs=108.6
Q ss_pred CCceeccCCCHHHHHHHHHHHhCCCC--CCCChHHHHHHHHHHhCCcchHHHHHHHHhcCC-ChHHHHHHHHHhhccCCC
Q 005744 7 SEDFLDWLLSNEEASHLFEKIVGHSA--KKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPR 83 (679)
Q Consensus 7 ~~~~~~~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~-~~~~W~~~~~~l~~~~~~ 83 (679)
..+|+|++|+++||++||++.++... .++.+++.+++|+++|+|+||||+++|++|+.+ +..+|+++++++.+....
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999999999998433 456668899999999999999999999999754 889999999998776642
Q ss_pred ccccccc-ccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhccccccc
Q 005744 84 KIQGMDA-DLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNA 141 (679)
Q Consensus 84 ~~~~~~~-~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~ 141 (679)
..+... ...++.+||+.||.+ +|.||+|||+||+++.|+++.++++|+++|||+..
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 222222 388999999999997 99999999999999999999999999999999764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-21 Score=207.08 Aligned_cols=342 Identities=21% Similarity=0.235 Sum_probs=214.7
Q ss_pred cCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
.-+++.|++++|.+...|..+ .+++|+.|.++.|.+. ..|.+. .++++|++|.|.+|.+..+|.++..+.+|++|++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 334999999999999999988 8999999999999876 778665 8999999999999999999999999999999999
Q ss_pred CCcccCC-cccccCCCCCcEEEecCC-CCCccc-------------------hhhhcCCCCCEEcccCCccccccCcccc
Q 005744 288 ENCLVVD-VAIIGDLKKLEILSLKHS-SIEQLP-------------------REIGQLTCLKLLDLSNCSKLKEIRPNVI 346 (679)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~-~l~~lp-------------------~~i~~L~~L~~L~l~~~~~l~~lp~~~l 346 (679)
+.|.+.. |..+..+..+..++.++| ++..++ .++..++. .|+|+++ .+..+. +
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N-~~~~~d---l 195 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN-EMEVLD---L 195 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccc-hhhhhh---h
Confidence 9999998 999999999999999988 433332 22233333 3666663 222211 3
Q ss_pred cCCCCCcEEEccCCccccee-ccCCc----------CChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCC
Q 005744 347 SNLTRLEELYMGNSFTQWKV-EGQSN----------ASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGD 414 (679)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~-~~~~~----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 414 (679)
..+.+|+.+....|.+.... .+... ...-.-..-.+|++++++.+.+..+|+++ .+.+|+.+.+..+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 34444444443333322110 00000 00000011245677777777777777665 66666666553222
Q ss_pred --------------------------cccCCCCCCCcceEEecCCCcceechhHHHHhhc-ccccccccccCcccccccc
Q 005744 415 --------------------------VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR-TEDLHLDELAGFKNVVHEL 467 (679)
Q Consensus 415 --------------------------~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~ 467 (679)
++....+.+.+++|+|..+....+|+.....+.. |..|..+.+.. ...|. .
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~-~ 353 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL-STLPS-Y 353 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc-ccccc-c
Confidence 2234556778889999888888888755543332 55555544332 22221 2
Q ss_pred cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccc
Q 005744 468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH 547 (679)
Q Consensus 468 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 547 (679)
.. ..++.|+.|++.+|..-... .+....++.|+.|+++. +.|.++|...+ ..++.|++|++++ ++|+.
T Consensus 354 ~e-~~~~~Lq~LylanN~Ltd~c---~p~l~~~~hLKVLhLsy-NrL~~fpas~~------~kle~LeeL~LSG-NkL~~ 421 (1081)
T KOG0618|consen 354 EE-NNHAALQELYLANNHLTDSC---FPVLVNFKHLKVLHLSY-NRLNSFPASKL------RKLEELEELNLSG-NKLTT 421 (1081)
T ss_pred cc-hhhHHHHHHHHhcCcccccc---hhhhccccceeeeeecc-cccccCCHHHH------hchHHhHHHhccc-chhhh
Confidence 11 45666777777666533322 22335667777777776 66666665443 3666677777776 56666
Q ss_pred cccHHHHHHhhcCcEEEEcccccchhhh
Q 005744 548 LFPFSLVKNLLQLQKVKVTDCTNLKLIV 575 (679)
Q Consensus 548 l~~~~~~~~l~~L~~L~i~~c~~L~~l~ 575 (679)
+|. .+..++.|++|...++ .|..+|
T Consensus 422 Lp~--tva~~~~L~tL~ahsN-~l~~fP 446 (1081)
T KOG0618|consen 422 LPD--TVANLGRLHTLRAHSN-QLLSFP 446 (1081)
T ss_pred hhH--HHHhhhhhHHHhhcCC-ceeech
Confidence 642 2345555555554433 344444
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-19 Score=152.37 Aligned_cols=167 Identities=24% Similarity=0.381 Sum_probs=143.7
Q ss_pred cccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccC
Q 005744 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGD 300 (679)
Q Consensus 222 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~ 300 (679)
+.+++..+.+++++.|.++.|.++ .+|+.+ ..+++|++|++++|+++++|.+++.++.||.|++.-|.+.. |..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 355666677888888888888876 667776 78999999999999999999999999999999999998888 999999
Q ss_pred CCCCcEEEecCCCCC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhh
Q 005744 301 LKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK 378 (679)
Q Consensus 301 L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 378 (679)
++-|++||+.+|++. .+|..|..++.|+-|++++ +.+.-+|++ ++++++||.|.+..|.+. ..+.+++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHHH
Confidence 999999999999777 7898888899999999998 677888888 899999999999888664 4567888
Q ss_pred cCCCCceEEeecCCCccCCccc
Q 005744 379 QLSRLTTLEVHIPDAQVMPQDL 400 (679)
Q Consensus 379 ~l~~L~~L~l~~~~~~~~~~~~ 400 (679)
.+++|+.|++.+|.+..+|..+
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 8999999999999988888764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.9e-15 Score=165.91 Aligned_cols=244 Identities=18% Similarity=0.095 Sum_probs=156.5
Q ss_pred chhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCC
Q 005744 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (679)
Q Consensus 200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l 279 (679)
.++.+|.....+++.|++.+|.+..+|. ..++|++|++++|.+. .+|. ..++|+.|++++|.++.+|..+
T Consensus 212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 212 GLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCcCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---
Confidence 4555666555677888888888877775 3577888888877766 5553 2457778888888777776533
Q ss_pred cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (679)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (679)
.+|+.|++++|.+.. |.. +++|++|++++|+++.+|... .+|+.|++++ +.++.+|. + ..+|+.|+++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS 350 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT--L--PSGLQELSVS 350 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---cccccccccc-Cccccccc--c--ccccceEecC
Confidence 467777888887776 432 356788888888777776532 3566677776 56666664 1 1467788888
Q ss_pred CCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCccee
Q 005744 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (679)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~ 438 (679)
+|.+.... .+ ..+|+.|+++.|.+..+|.. ..+|+.|++..+.+.......+.++.|+++++....+
T Consensus 351 ~N~Ls~LP---------~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 351 DNQLASLP---------TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL 417 (788)
T ss_pred CCccCCCC---------CC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCC
Confidence 77664211 11 23566677777777766653 2467777776555433223345677777777666655
Q ss_pred chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
|.. +.+|+.|++++|. ++.+|..+ ..+++|+.|+|++|+
T Consensus 418 P~l----~~~L~~L~Ls~Nq-Lt~LP~sl---~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 PML----PSGLLSLSVYRNQ-LTRLPESL---IHLSSETTVNLEGNP 456 (788)
T ss_pred Ccc----hhhhhhhhhccCc-ccccChHH---hhccCCCeEECCCCC
Confidence 532 3456677777655 34566665 567777777777775
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.3e-18 Score=144.85 Aligned_cols=153 Identities=22% Similarity=0.366 Sum_probs=127.0
Q ss_pred hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL 285 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 285 (679)
.....++++.+++|++..+|+.+ .+.+|++|++++|.+. .+|.++ +.++.||.|+++-|++..+|..|+.++.|++|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 34567788888888888888887 8888888888888775 777776 78888888888888888888888888888888
Q ss_pred EcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744 286 SLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 286 ~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
|+..|.+.+ |..|..+..|+.|+++.|.+..+|..++++++||.|.+++ +.+-++|.+ ++.++.|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhccccee
Confidence 888888766 7778888888888888888888888888888888888888 667778877 78888888888888866
Q ss_pred c
Q 005744 363 Q 363 (679)
Q Consensus 363 ~ 363 (679)
.
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 4
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=5.1e-15 Score=163.73 Aligned_cols=245 Identities=16% Similarity=0.208 Sum_probs=131.2
Q ss_pred CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (679)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 290 (679)
+...++++++.+..+|..+ .++++.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 3455555555555555433 234556666555554 4554432 355666666666555555443 35566666666
Q ss_pred ccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744 291 LVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (679)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~ 369 (679)
.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.++.+|.. +. ++|+.|++++|.+....
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP--- 320 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTALP--- 320 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCccccCC---
Confidence 5555 44433 355666666665555555443 3566666655 345555543 21 34555555555443110
Q ss_pred CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCC-CCCCCcceEEecCCCcceechhHHHHhhc
Q 005744 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS-DGYETSKTLKLQLNNSTYLGYGMKMLLKR 448 (679)
Q Consensus 370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~L~~~~~~~~~~~~~~~l~~ 448 (679)
..+ .++|+.|++++|.+..+|..+. ++|+.|++..+.+.... ...+.|+.|+|++|....+|..+. ..
T Consensus 321 -----~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~s 389 (754)
T PRK15370 321 -----ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP---AA 389 (754)
T ss_pred -----ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH---HH
Confidence 001 1345555565555555554432 45555555444322110 112467778888777777776654 46
Q ss_pred ccccccccccCcccccccccc-hhhccccceEeeecCC
Q 005744 449 TEDLHLDELAGFKNVVHELDD-EEGFARLRHLHVHNGP 485 (679)
Q Consensus 449 L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 485 (679)
|+.|++++|.. ..+|..+.. ...++++..|.+.+|+
T Consensus 390 L~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 88888888764 455554421 1335778888888886
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=7.8e-15 Score=161.20 Aligned_cols=259 Identities=20% Similarity=0.162 Sum_probs=181.1
Q ss_pred CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~ 289 (679)
..-..|+++.+.+..+|..+. ++|+.|.+..|++. .+|. ..++|++|++++|.++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 456788999999999998663 48999999998877 5774 368999999999999999864 46889999999
Q ss_pred cccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (679)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (679)
|.+.. |.. ..+|+.|++++|+++.+|.. +++|++|++++ +.++.+|.. . .+|+.|++++|.+...
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l-p---~~L~~L~Ls~N~L~~L--- 337 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL-P---SELCKLWAYNNQLTSL--- 337 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC-c---ccccccccccCccccc---
Confidence 99887 543 35788999999999999863 47899999998 578888752 2 4677888888876421
Q ss_pred CCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhc
Q 005744 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR 448 (679)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~ 448 (679)
..+ ..+|+.|++++|.+..+|.. ..+|+.|++ +.+....+|.. ..+
T Consensus 338 ------P~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~L--------------------s~N~L~~LP~l----~~~ 383 (788)
T PRK15387 338 ------PTL--PSGLQELSVSDNQLASLPTL--PSELYKLWA--------------------YNNRLTSLPAL----PSG 383 (788)
T ss_pred ------ccc--ccccceEecCCCccCCCCCC--Ccccceehh--------------------hccccccCccc----ccc
Confidence 111 14788999999988877653 234444444 33333333321 346
Q ss_pred ccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCc
Q 005744 449 TEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528 (679)
Q Consensus 449 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 528 (679)
|+.|++++|.. ..+|.. .++|+.|++++|. +..++. .+.+|+.|++++ ++++.+|.. .
T Consensus 384 L~~LdLs~N~L-t~LP~l------~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP~s-------l 441 (788)
T PRK15387 384 LKELIVSGNRL-TSLPVL------PSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPES-------L 441 (788)
T ss_pred cceEEecCCcc-cCCCCc------ccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccChH-------H
Confidence 77788877653 344432 3568888888875 433331 234677888887 677766543 4
Q ss_pred cccCCccEEEEecCCCcccc
Q 005744 529 KSFSNLRIIKVEGCHRVKHL 548 (679)
Q Consensus 529 ~~l~~L~~L~l~~c~~L~~l 548 (679)
..+++|+.|+++++ .+...
T Consensus 442 ~~L~~L~~LdLs~N-~Ls~~ 460 (788)
T PRK15387 442 IHLSSETTVNLEGN-PLSER 460 (788)
T ss_pred hhccCCCeEECCCC-CCCch
Confidence 46788888888874 45543
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=1e-14 Score=163.89 Aligned_cols=279 Identities=23% Similarity=0.346 Sum_probs=180.5
Q ss_pred CcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc--CCcCCcc-ccCCcCCCEEEcCCccc-CC-c
Q 005744 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR--FHSLPSS-LGCLINLRTLSLENCLV-VD-V 295 (679)
Q Consensus 221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~lp~~-i~~l~~L~~L~L~~~~~-~~-~ 295 (679)
.....|........|...+.+|.+. .++.. ...+.|++|-+.+|. +..++.. |..+++|++|||++|.- .. |
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred CccccccccchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3344666566778888888887764 34443 345579999999886 6666554 67799999999998754 44 9
Q ss_pred ccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChh
Q 005744 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (679)
Q Consensus 296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (679)
++|++|.+||+|+++++.++.+|.++++|.+|.+|++..+..+..+ ++++..|++|++|.+...... .....+.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~ 662 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS-----NDKLLLK 662 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccc-----cchhhHH
Confidence 9999999999999999999999999999999999999986666666 444666999999988765421 1224455
Q ss_pred hhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccc
Q 005744 376 ELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLD 455 (679)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 455 (679)
++.++.+|+.+.+..... .+...+ ..+.......+.+.+.
T Consensus 663 el~~Le~L~~ls~~~~s~-~~~e~l---------------------------------------~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSV-LLLEDL---------------------------------------LGMTRLRSLLQSLSIE 702 (889)
T ss_pred hhhcccchhhheeecchh-HhHhhh---------------------------------------hhhHHHHHHhHhhhhc
Confidence 666666666655532221 000000 0011112223333333
Q ss_pred cccCcccccccccchhhccccceEeeecCCCeeEEEeCCC--cccc-ccccceeeccccccccccccCcccCCCCccccC
Q 005744 456 ELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDG--RVGT-FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFS 532 (679)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~-~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~ 532 (679)
++. ....+..+ ..+.+|+.|.+.+|...+....... .... ||++..+.+.+|..++......+ .|
T Consensus 703 ~~~-~~~~~~~~---~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f--------~~ 770 (889)
T KOG4658|consen 703 GCS-KRTLISSL---GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF--------AP 770 (889)
T ss_pred ccc-cceeeccc---ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc--------cC
Confidence 322 22233333 6788888888888876543221111 1122 77888888888887777544333 38
Q ss_pred CccEEEEecCCCccccccHHHHHHhhcCcE
Q 005744 533 NLRIIKVEGCHRVKHLFPFSLVKNLLQLQK 562 (679)
Q Consensus 533 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 562 (679)
+|+.|.+..|+.+.++.+. ...+..+++
T Consensus 771 ~L~~l~l~~~~~~e~~i~~--~k~~~~l~~ 798 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPK--LKALLELKE 798 (889)
T ss_pred cccEEEEecccccccCCCH--HHHhhhccc
Confidence 8999999888888876443 344444544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=7.4e-15 Score=162.47 Aligned_cols=235 Identities=18% Similarity=0.211 Sum_probs=180.1
Q ss_pred cchhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccC
Q 005744 199 ADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278 (679)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 278 (679)
..+..+|...++.++.|++++|.+..+|..+. ++|++|++++|.+. .+|..+ ..+|+.|++++|.++.+|..+.
T Consensus 188 ~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~- 261 (754)
T PRK15370 188 LGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRITELPERLP- 261 (754)
T ss_pred CCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccc-cCChhh---hccccEEECcCCccCcCChhHh-
Confidence 34555666567789999999999999987653 68999999999876 678755 3479999999999999998775
Q ss_pred CcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744 279 LINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (679)
Q Consensus 279 l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 357 (679)
.+|++|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.+..+|.. + .++|+.|++
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~L 332 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEA 332 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccc
Confidence 589999999999888 76664 589999999999999987654 4789999998 677788764 3 268999999
Q ss_pred cCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCC-CCCcceEEecCCCcc
Q 005744 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDG-YETSKTLKLQLNNST 436 (679)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~L~~~~~~ 436 (679)
++|.+... +..+ .++|+.|++++|.+..+|..+ .++|+.|++..+........ ...|+.|+++++...
T Consensus 333 s~N~Lt~L--------P~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 333 GENALTSL--------PASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLV 401 (754)
T ss_pred cCCccccC--------Chhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc
Confidence 99876521 1122 258999999999988887765 36899999887764432211 236888889988888
Q ss_pred eechhHHHH---hhcccccccccccC
Q 005744 437 YLGYGMKML---LKRTEDLHLDELAG 459 (679)
Q Consensus 437 ~~~~~~~~~---l~~L~~L~l~~~~~ 459 (679)
.+|..+... ++.+..|.+.+|..
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 888776553 35678888888764
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-16 Score=151.38 Aligned_cols=143 Identities=23% Similarity=0.309 Sum_probs=96.8
Q ss_pred EecccchhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-C
Q 005744 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (679)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p 273 (679)
-+.+..++++|...+.....|.|..|.|+ .+|+..|+.+++||.||||+|.|+.+ |
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~-----------------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p 108 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQIS-----------------------SIPPGAFKTLHRLRRLDLSKNNISFIAP 108 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcc-----------------------cCChhhccchhhhceecccccchhhcCh
Confidence 34455666666666666666666665554 45555667777777777777777766 6
Q ss_pred ccccCCcCCCEEEcCC-cccCC-c-ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCC
Q 005744 274 SSLGCLINLRTLSLEN-CLVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (679)
Q Consensus 274 ~~i~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l 349 (679)
+.|..+..|-.|.+.+ |+|.+ | ..|++|..|+.|.+.-|++..++. .+..|++|..|.+.+ +.+..++.+.+..+
T Consensus 109 ~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l 187 (498)
T KOG4237|consen 109 DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGL 187 (498)
T ss_pred HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccch
Confidence 7777777777666665 66666 3 557777777777777777775544 467777777777777 66677776667777
Q ss_pred CCCcEEEccCCc
Q 005744 350 TRLEELYMGNSF 361 (679)
Q Consensus 350 ~~L~~L~l~~~~ 361 (679)
..++++.+..|.
T Consensus 188 ~~i~tlhlA~np 199 (498)
T KOG4237|consen 188 AAIKTLHLAQNP 199 (498)
T ss_pred hccchHhhhcCc
Confidence 777777766553
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=6.8e-16 Score=149.16 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=162.7
Q ss_pred ccchhhhhh---hhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744 198 VADLKEELD---KIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL 272 (679)
Q Consensus 198 ~~~~~~~~~---~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 272 (679)
.+.++.+|. ...+++|+|+|++|.|+.|.+.. +++.+.+|.+.+++....+|.+.|+++..|+.|.+.-|.+..+
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 345666666 66788999999999998876543 8899988888885545589999999999999999999988866
Q ss_pred -CccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCC---cc----------chhhhcCCCCCEEcccCCc
Q 005744 273 -PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIE---QL----------PREIGQLTCLKLLDLSNCS 336 (679)
Q Consensus 273 -p~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~---~l----------p~~i~~L~~L~~L~l~~~~ 336 (679)
.+.+..+++|+.|.+..|.+.. + ..+..+..++++.+..|.+- .+ |..++.....+-..+.+ .
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~ 234 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-K 234 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-H
Confidence 4668889999999999998877 4 47888888888887776421 11 22223333332223332 3
Q ss_pred cccccCcccccCCCCCcEE---EccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeC
Q 005744 337 KLKEIRPNVISNLTRLEEL---YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIG 413 (679)
Q Consensus 337 ~l~~lp~~~l~~l~~L~~L---~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 413 (679)
++..+++..+. .+++.+ ..+.+.... .....-++.+++|++|++++|.++.+.+.
T Consensus 235 Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~------~cP~~cf~~L~~L~~lnlsnN~i~~i~~~-------------- 292 (498)
T KOG4237|consen 235 RINQEDARKFL--CSLESLPSRLSSEDFPDS------ICPAKCFKKLPNLRKLNLSNNKITRIEDG-------------- 292 (498)
T ss_pred Hhcccchhhhh--hhHHhHHHhhccccCcCC------cChHHHHhhcccceEeccCCCccchhhhh--------------
Confidence 33333332111 112222 111111110 01123467788888888888877665443
Q ss_pred CcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744 414 DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 414 ~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
++.....++.|.|..|....+...++..+..|+.|++.+|......|..| +.+.+|..|.+-.|+
T Consensus 293 ----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF---~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 ----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF---QTLFSLSTLNLLSNP 357 (498)
T ss_pred ----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc---cccceeeeeehccCc
Confidence 33444555555555555555556666666677777777766555555555 556666677666655
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.3e-13 Score=139.52 Aligned_cols=189 Identities=23% Similarity=0.331 Sum_probs=164.8
Q ss_pred ccchhhhhh----hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744 198 VADLKEELD----KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL 272 (679)
Q Consensus 198 ~~~~~~~~~----~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 272 (679)
+.+++++|. .........+++.|++.++|... .+..|..+.++.|.+. .+|..+ .++..|.+||++.|++..+
T Consensus 59 ~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~l 136 (722)
T KOG0532|consen 59 GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHL 136 (722)
T ss_pred cchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcC
Confidence 344445554 23445677899999999999887 7889999999999876 677776 8999999999999999999
Q ss_pred CccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744 273 PSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (679)
Q Consensus 273 p~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~ 351 (679)
|..++.|+ |+.|.+++|++.. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.++. +++..+|++ +..| .
T Consensus 137 p~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-p 212 (722)
T KOG0532|consen 137 PDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-P 212 (722)
T ss_pred ChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-c
Confidence 99998886 9999999999999 9999999999999999999999999999999999999999 788999988 6766 5
Q ss_pred CcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc
Q 005744 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL 400 (679)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 400 (679)
|..|+++.|.+. ..+-.+.+|++|++|.+.+|-+..-|..+
T Consensus 213 Li~lDfScNkis--------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 213 LIRLDFSCNKIS--------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred eeeeecccCcee--------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 999999999875 45568899999999999999999888777
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=5.3e-12 Score=129.75 Aligned_cols=123 Identities=23% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCeEEEccCCCcc-----cCCccc-CCcceeeeeeccCCccc------CCCchhhcCCCCccEEEeCCCcCC-cCCcccc
Q 005744 211 APTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTGFRFH-SLPSSLG 277 (679)
Q Consensus 211 ~l~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~ 277 (679)
.++.++++++.+. .++..+ ..+.++.++++++.+.+ .++ ..+..+++|+.|++++|.+. ..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3555666555541 122222 34445555555544331 011 12344555555555555544 2222333
Q ss_pred CCcC---CCEEEcCCcccCC------cccccCC-CCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccC
Q 005744 278 CLIN---LRTLSLENCLVVD------VAIIGDL-KKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSN 334 (679)
Q Consensus 278 ~l~~---L~~L~L~~~~~~~------~~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~ 334 (679)
.+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 3332 5555555555442 1233344 55555555555544 2233344444555555555
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=6.6e-12 Score=129.01 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCcceeeeeeccCCcccC----CCchhhcCCCCccEEEeCCCcCCc-------CCccccCCcCCCEEEcCCcccCC--cc
Q 005744 230 GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHS-------LPSSLGCLINLRTLSLENCLVVD--VA 296 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~i~~l~~L~~L~L~~~~~~~--~~ 296 (679)
.+++|+.|++.++.+... ++. .+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 445566666666655321 222 22455556666666655442 23344556666666666666543 33
Q ss_pred cccCCCC---CcEEEecCCCCC-----ccchhhhcC-CCCCEEcccCCcccc-----ccCcccccCCCCCcEEEccCCcc
Q 005744 297 IIGDLKK---LEILSLKHSSIE-----QLPREIGQL-TCLKLLDLSNCSKLK-----EIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 297 ~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
.+..+.+ |++|++++|.+. .+...+..+ ++|++|++++|. ++ .++. .+..+++|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAK-ALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHH-HHHhCCCcCEEECcCCCC
Confidence 3333333 666666666554 222334445 566666666643 22 1111 134445566666666544
Q ss_pred cceeccCCcCChhhhhcCCCCceEEeecCCC
Q 005744 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (679)
Q Consensus 363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (679)
... ........+...++|+.|++++|.+
T Consensus 178 ~~~---~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 178 GDA---GIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred chH---HHHHHHHHHHhCCCCCEEeccCCcc
Confidence 320 0001122334445566666655543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=8.8e-11 Score=106.02 Aligned_cols=120 Identities=25% Similarity=0.331 Sum_probs=34.1
Q ss_pred CCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccc-cCCcCCCEEEc
Q 005744 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSL 287 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~L 287 (679)
.+.+.|++++|.+..+.... .+.+|++|++++|.+. .++. +..+++|++|++++|.++.+++.+ ..+++|++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 34566666666665554333 3556666666666554 3332 345566666666666666554433 24556666666
Q ss_pred CCcccCC---cccccCCCCCcEEEecCCCCCccch----hhhcCCCCCEEcc
Q 005744 288 ENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDL 332 (679)
Q Consensus 288 ~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l 332 (679)
++|.+.+ ...+..+++|++|++.+|.++.-+. .+..+++|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6665544 3444555556666666655543322 2444555555543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=3.8e-12 Score=129.14 Aligned_cols=189 Identities=21% Similarity=0.296 Sum_probs=161.2
Q ss_pred eEEEccCCCcccCCccc---CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744 213 TAISIPFRGIYELPERL---GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~ 289 (679)
-++.|++.++..+|..- .+.--...+++.|.+. .+|..+ ..+-.|..+.+..|.+..+|..++++..|.+|+|+.
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 34667777776666432 5666777888998877 788876 778899999999999999999999999999999999
Q ss_pred cccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (679)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (679)
|++.. |..++.|+ |+.|-+++|+++.+|..|+.+..|.+|+.+. +.+..+|+. ++.+.+|+.|++..|.+.
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~----- 202 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLE----- 202 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence 99999 88888875 9999999999999999999999999999998 678889887 899999999999988765
Q ss_pred CCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCc
Q 005744 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDV 415 (679)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 415 (679)
..++++..| .|..|++++|++..+|..+ .+..|+.|.+.++..
T Consensus 203 ---~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 203 ---DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ---hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 556778855 5899999999999999887 788888887766553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.4e-10 Score=104.76 Aligned_cols=128 Identities=27% Similarity=0.362 Sum_probs=38.2
Q ss_pred CCCCccEEEeCCCcCCcCCcccc-CCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhh-cCCCCCEEcc
Q 005744 255 GMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIG-QLTCLKLLDL 332 (679)
Q Consensus 255 ~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~-~L~~L~~L~l 332 (679)
+...+|.|+|++|.|+.+. .++ .+.+|+.|++++|.+...+.+..+++|++|++++|.|++++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445666666666666553 243 456666666666666665566666666666666666666655443 4666777766
Q ss_pred cCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEe
Q 005744 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (679)
Q Consensus 333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (679)
++ +.+.++.. ..++.+++|+.|++.+|.+... ......-+..+++|+.|+-
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETT
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCC
Confidence 66 44444322 2255566677777666655311 1112223445556665554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=9.6e-11 Score=109.78 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=132.1
Q ss_pred hhcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCccc---CCCchh-------------------hcCCCCccEEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSL---QIPDPF-------------------FEGMTELRVLD 263 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~---~~~~~~-------------------~~~l~~L~~L~ 263 (679)
...+++..+-++.+.-+.+.... .-|.|.++.+....+.. -+|... ....+.|..+|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 34556666666666554444332 34556666654433211 011100 13356788999
Q ss_pred eCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCc
Q 005744 264 LTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP 343 (679)
Q Consensus 264 l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 343 (679)
||+|.|+.+.+++.-++.+|.|+++.|.+.....+..|.+|+.||+++|.++++-.+-.+|-|.++|.+.+ +.+.++..
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG 369 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLSG 369 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhhh
Confidence 99999999888888899999999999999887778999999999999998888876667888999999998 67777643
Q ss_pred ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCcc
Q 005744 344 NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD 399 (679)
Q Consensus 344 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 399 (679)
+++|-+|..|++.+|.+..- .....+++++.|+.+.+.+|.+..+++.
T Consensus 370 --L~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 370 --LRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred --hHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCccccchH
Confidence 78888999999998876421 2345677888888888888877655543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=8.7e-11 Score=110.06 Aligned_cols=128 Identities=27% Similarity=0.334 Sum_probs=66.9
Q ss_pred CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEe
Q 005744 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL 309 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 309 (679)
...|+++++++|.+. .+.+++ .-.+.+|+|++|.|++..+-. +..|++|+.|||++|.+.. ...-.+|-|.++|.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 344555555555544 343333 445555555555555554433 5555555555655555555 333344555555555
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCccc
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~ 363 (679)
++|.|..+. ++++|.+|.+||+++ +++..+.. ..||+|+.|+++.+.+|.+.
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 555555542 455555566666555 34433321 12566666666666665543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.1e-09 Score=115.84 Aligned_cols=168 Identities=29% Similarity=0.381 Sum_probs=73.8
Q ss_pred CcceeeeeeccCCcccCCCchhhcCCC-CccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEE
Q 005744 231 FLKLKLFLFFTENLSLQIPDPFFEGMT-ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (679)
.+.++.|.+.++.+. .++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+.+ +...+.+.+|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344444444444443 333322 2232 4555555555555554444555555555555555544 33333445555555
Q ss_pred ecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEe
Q 005744 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (679)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (679)
+++|+++.+|..+..+..|++|.++++. ....+.. +.++.++..+.+.++.+. ..+..++.+++++.|++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNLETLDL 262 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------eccchhccccccceecc
Confidence 5555555555444444445555554421 2222222 344444444444443321 01223344444555555
Q ss_pred ecCCCccCCccccccccceeEE
Q 005744 389 HIPDAQVMPQDLVFVELERFRI 410 (679)
Q Consensus 389 ~~~~~~~~~~~~~~~~L~~L~l 410 (679)
+.|.+..++....+.+++.|++
T Consensus 263 s~n~i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 263 SNNQISSISSLGSLTNLRELDL 284 (394)
T ss_pred ccccccccccccccCccCEEec
Confidence 5554444444224444444444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2e-09 Score=113.91 Aligned_cols=170 Identities=27% Similarity=0.409 Sum_probs=81.6
Q ss_pred CCCCccEEEeCCCcCCcCCccccCCc-CCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcc
Q 005744 255 GMTELRVLDLTGFRFHSLPSSLGCLI-NLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332 (679)
Q Consensus 255 ~l~~L~~L~l~~~~l~~lp~~i~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 332 (679)
.++.+..|++.++.++.+|.....+. +|+.|++++|.+.. +..++.+++|+.|++++|++..+|...+.+++|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 33455555555555555555554443 55555555555555 34555555555555555555555554445555555555
Q ss_pred cCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEE
Q 005744 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC 411 (679)
Q Consensus 333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 411 (679)
++ +.+..+|.. ++.+..|++|.+++|... ..+..+.++.++..+.+..+.+..++..+ .+.+++.|++.
T Consensus 194 s~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 194 SG-NKISDLPPE-IELLSALEELDLSNNSII--------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred cC-CccccCchh-hhhhhhhhhhhhcCCcce--------ecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 55 445555543 233444555555554211 22233444444444444444444433333 33445555544
Q ss_pred eCCccc--CCCCCCCcceEEecCCC
Q 005744 412 IGDVWS--WSDGYETSKTLKLQLNN 434 (679)
Q Consensus 412 ~~~~~~--~~~~~~~l~~L~L~~~~ 434 (679)
.+.+.. .+....+++.+.++++.
T Consensus 264 ~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 264 NNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccccccccCccCEEeccCcc
Confidence 433222 13444455555555443
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=1.6e-10 Score=113.54 Aligned_cols=83 Identities=28% Similarity=0.331 Sum_probs=45.5
Q ss_pred CccEEEeCCCcCC---cCCccccCCcCCCEEEcCCcccCC---c-ccccCCCCCcEEEecCC-CCCcc--chhhhcCCCC
Q 005744 258 ELRVLDLTGFRFH---SLPSSLGCLINLRTLSLENCLVVD---V-AIIGDLKKLEILSLKHS-SIEQL--PREIGQLTCL 327 (679)
Q Consensus 258 ~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~L~~~~~~~---~-~~i~~L~~L~~L~l~~~-~l~~l--p~~i~~L~~L 327 (679)
.|+.|.+.|+.-. .+-..-.++++++.|.+.+|...+ . ..-...++|++|++..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777776522 233334566777777777775333 1 22234566666666665 44421 1123456666
Q ss_pred CEEcccCCccccc
Q 005744 328 KLLDLSNCSKLKE 340 (679)
Q Consensus 328 ~~L~l~~~~~l~~ 340 (679)
.+|+++.|..++.
T Consensus 219 ~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 219 KYLNLSWCPQISG 231 (483)
T ss_pred HHhhhccCchhhc
Confidence 6666666655544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-09 Score=107.40 Aligned_cols=202 Identities=19% Similarity=0.138 Sum_probs=134.1
Q ss_pred hhcCCCeEEEccCCCcccCCc--cc-CCcceeeeeeccCCccc-CCCchhhcCCCCccEEEeCCCcCCcCCcc--ccCCc
Q 005744 207 KIDEAPTAISIPFRGIYELPE--RL-GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLI 280 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--i~~l~ 280 (679)
...++++.+++.++.+...+. .. .++++|.|+|+.|-+.. ..-..+...+++|+.|+++.|.+...-++ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 556789999999988876663 33 79999999998876542 11234457899999999999987643222 23678
Q ss_pred CCCEEEcCCcccCC---cccccCCCCCcEEEecCC-CCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEE
Q 005744 281 NLRTLSLENCLVVD---VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEEL 355 (679)
Q Consensus 281 ~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L 355 (679)
+|+.|.+++|.++. ......+++|+.|++.+| .+..-.....-+..|++|+|+++ .+-+.+. ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhh
Confidence 89999999998875 344556788999999988 33322233455678889999984 4444441 126778888888
Q ss_pred EccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc---cccccceeEE
Q 005744 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL---VFVELERFRI 410 (679)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l 410 (679)
+++.|.+.. +.............+++|++|.+..|.+..+++-- .+++|+.|.+
T Consensus 277 nls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 277 NLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hccccCcch-hcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 888876642 11222223334456678888888888776554331 4445555544
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.4e-09 Score=103.49 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=134.1
Q ss_pred hhcCCCeEEEccCCCcccCCcc---c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC--cCCccccCCc
Q 005744 207 KIDEAPTAISIPFRGIYELPER---L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLI 280 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~ 280 (679)
..+.+++.|+++.|-+...... . .+|+|+.|+++.|.+.-...+..-..+++|+.|.+++|.++ .+-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 5678999999999987544332 2 79999999999998764333333356889999999999987 3444456789
Q ss_pred CCCEEEcCCcc-cCC-cccccCCCCCcEEEecCCCCCccc--hhhhcCCCCCEEcccCCcccccc--Ccc----cccCCC
Q 005744 281 NLRTLSLENCL-VVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEI--RPN----VISNLT 350 (679)
Q Consensus 281 ~L~~L~L~~~~-~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~l--p~~----~l~~l~ 350 (679)
+|..|+|..|. +.. -....-++.|+.|||++|++..++ ..++.++.|+.|+++. +.+.++ |+. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccc
Confidence 99999999995 332 455666889999999999888777 4588999999999988 445443 221 124578
Q ss_pred CCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (679)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (679)
+|++|++..|.+... ..+..+..+.+|+.|.+.++.+.
T Consensus 302 kL~~L~i~~N~I~~w------~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRDW------RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCccccc------cccchhhccchhhhhhccccccc
Confidence 999999999977321 34566777778888887766543
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.63 E-value=8.3e-08 Score=106.44 Aligned_cols=103 Identities=21% Similarity=0.372 Sum_probs=75.2
Q ss_pred CccEEEeCCCcCC-cCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEccc
Q 005744 258 ELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS 333 (679)
Q Consensus 258 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 333 (679)
.++.|+|++|.+. .+|..++++++|++|+|++|.+.. |..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677788887776 567778888888888888887765 667788888888888888777 677778888888888888
Q ss_pred CCccccccCcccccC-CCCCcEEEccCCc
Q 005744 334 NCSKLKEIRPNVISN-LTRLEELYMGNSF 361 (679)
Q Consensus 334 ~~~~l~~lp~~~l~~-l~~L~~L~l~~~~ 361 (679)
+|.....+|.. ++. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 75555566655 444 3456677777664
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=5.2e-10 Score=109.92 Aligned_cols=291 Identities=15% Similarity=0.068 Sum_probs=150.5
Q ss_pred cCCCEEEcCCcccCCc----ccccCCCCCcEEEecCC-CCCc--cchhhhcCCCCCEEcccCCccccccCccc-ccCCCC
Q 005744 280 INLRTLSLENCLVVDV----AIIGDLKKLEILSLKHS-SIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNV-ISNLTR 351 (679)
Q Consensus 280 ~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~-l~~l~~ 351 (679)
..|+.|.++||.-... ..-.+.+++++|++.+| +++. +-.--..+.+|++|++..|..++...-.. ....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578888998875441 33456788899999888 5552 22223468899999999988887764332 234788
Q ss_pred CcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEec
Q 005744 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQ 431 (679)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~ 431 (679)
|++|++++|.-.... ..-.-......++.+...++.-. + +..|.. .-..+..+..+++.
T Consensus 218 L~~lNlSwc~qi~~~-----gv~~~~rG~~~l~~~~~kGC~e~--~----le~l~~----------~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGN-----GVQALQRGCKELEKLSLKGCLEL--E----LEALLK----------AAAYCLEILKLNLQ 276 (483)
T ss_pred HHHhhhccCchhhcC-----cchHHhccchhhhhhhhcccccc--c----HHHHHH----------HhccChHhhccchh
Confidence 999999888532110 00011122333333333322110 0 000000 00112222233333
Q ss_pred CCCcceech--hHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecc
Q 005744 432 LNNSTYLGY--GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH 509 (679)
Q Consensus 432 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 509 (679)
.+..+...+ .+...+..|+.|+.++|....+.+-+-.+ ++.++|+.|.+.+|.......- .....+.+.|+.+++.
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~f-t~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGF-TMLGRNCPHLERLDLE 354 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhh-hhhhcCChhhhhhccc
Confidence 332222111 11223456677777776665544333222 4567777777777765433210 1111356667777776
Q ss_pred ccccccccccCcccCCCCccccCCccEEEEecCCCcccccc---HHHHHHhhcCcEEEEcccccchhhhccccccccCCC
Q 005744 510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP---FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN 586 (679)
Q Consensus 510 ~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~ 586 (679)
+|.....-. + .+-..+.|.|+.|.++.|..+++... .....++..|+.+++.+||.+.+-..+
T Consensus 355 ~~~~~~d~t---L--~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le--------- 420 (483)
T KOG4341|consen 355 ECGLITDGT---L--ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE--------- 420 (483)
T ss_pred ccceehhhh---H--hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH---------
Confidence 665443321 1 11134567777777777665554310 011234556777777777766554332
Q ss_pred CccccccccccceeeccCCCCccc
Q 005744 587 GSISGVYFRKLHFLKLQHLPQLTS 610 (679)
Q Consensus 587 ~~~~l~~l~~L~~L~l~~cp~L~~ 610 (679)
.+...++|+.+++.+|.....
T Consensus 421 ---~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 421 ---HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ---HHhhCcccceeeeechhhhhh
Confidence 344666677777766655544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=7.3e-08 Score=71.33 Aligned_cols=58 Identities=31% Similarity=0.470 Sum_probs=27.7
Q ss_pred ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
+|++|++++|.+. .+|...|.++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444555544443 44444445555555555555555444 2344455555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.52 E-value=1e-07 Score=70.53 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=41.7
Q ss_pred CCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCC
Q 005744 257 TELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSI 314 (679)
Q Consensus 257 ~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l 314 (679)
++|++|++++|.++.+| ..|.++++|++|++++|.+.. +..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46777788877777775 456777777777777777766 45677777777777777653
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=4e-07 Score=101.06 Aligned_cols=104 Identities=25% Similarity=0.297 Sum_probs=80.0
Q ss_pred CCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744 281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (679)
Q Consensus 281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 357 (679)
.++.|+|++|.+.. |..++++++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47888999998876 788999999999999999887 78888999999999999985444466655 889999999999
Q ss_pred cCCcccceeccCCcCChhhhhc-CCCCceEEeecCC
Q 005744 358 GNSFTQWKVEGQSNASLGELKQ-LSRLTTLEVHIPD 392 (679)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 392 (679)
++|.+.+..+ ..+.. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP-------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC-------hHHhhccccCceEEecCCc
Confidence 9887754332 33333 2356677777764
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=2.9e-08 Score=105.21 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=93.3
Q ss_pred CeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 290 (679)
+..+++..|.+..+-..+ .+.+|..|++..|.+.. +... +..+.+|++|++++|.|+.+.. +..+..|+.|++.+|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccccc-hhhccchhhheeccC
Confidence 334445555554422222 56666666666666552 2221 2556677777777777766642 555666777777777
Q ss_pred ccCCcccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744 291 LVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (679)
Q Consensus 291 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~ 369 (679)
.+.....+..+..|+.+++++|.+..+... ...+.+|+.+.+.+ +.+..+.. +..+..+..+++..+.+.
T Consensus 151 ~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~------ 221 (414)
T KOG0531|consen 151 LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKIS------ 221 (414)
T ss_pred cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccce------
Confidence 776666666677777777777766666543 45666666666666 34443322 233334444444444432
Q ss_pred CcCChhhhhcCCC--CceEEeecCCCccC
Q 005744 370 SNASLGELKQLSR--LTTLEVHIPDAQVM 396 (679)
Q Consensus 370 ~~~~~~~l~~l~~--L~~L~l~~~~~~~~ 396 (679)
.+..+..+.. |+.++++.+.+...
T Consensus 222 ---~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 ---KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ---eccCcccchhHHHHHHhcccCccccc
Confidence 1112222222 56666666665544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=4e-08 Score=104.10 Aligned_cols=128 Identities=27% Similarity=0.372 Sum_probs=90.3
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (679)
.+..++.+.+..|.+.. +- +.+..+++|.+|++.+|.++.+...+..+++|++|++++|.|.....+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 45566666666666542 11 11367788888888888888776657778888888888888888777777888888888
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCcc
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~ 362 (679)
.+|.|+.+. ++..+++|+.+++++ +.+..+.. . +..+.+++.+++.+|.+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCch
Confidence 888877765 355677888888877 55666554 2 35667777777777755
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1.3e-08 Score=106.81 Aligned_cols=127 Identities=26% Similarity=0.283 Sum_probs=103.3
Q ss_pred CCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCC
Q 005744 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (679)
Q Consensus 257 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 335 (679)
..|.+.+.++|.+..+-.++.-+++|+.|+|++|++.+...+..+++|++|||++|.++.+|.- ...+. |+.|.+++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn- 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN- 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-
Confidence 4678888999999888888889999999999999999877899999999999999999988862 33344 99999998
Q ss_pred ccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCC
Q 005744 336 SKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (679)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (679)
|.++++-. +.+|.+|+.|++++|.+... ..+..|..|..|+.|.+.+|-+
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCcc
Confidence 77777743 78999999999999876421 3345666777888888888754
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.5e-08 Score=92.94 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=38.9
Q ss_pred hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCC
Q 005744 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH 543 (679)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 543 (679)
..+|+|.+|+|++|..++. +....+..|+.|++|.++.|..+. |...+. ....|+|..|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~----l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDII--PETLLE----LNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCC--hHHeee----eccCcceEEEEecccc
Confidence 4577777777777765543 222333567777777777775542 111222 4566777777777763
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=5.4e-08 Score=102.19 Aligned_cols=124 Identities=21% Similarity=0.189 Sum_probs=98.9
Q ss_pred CCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744 281 NLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (679)
Q Consensus 281 ~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (679)
.|.+-+.+.|.+.. -.++.-++.|+.|+|++|++++.. .+..|++|++|||+. |.++.+|.-..... +|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecc
Confidence 46666777777776 677888999999999999999876 689999999999999 88999987433334 499999999
Q ss_pred CcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc---cccccceeEEEeCCcc
Q 005744 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL---VFVELERFRICIGDVW 416 (679)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~ 416 (679)
|.+ ..+..+.+|.+|+.|++++|-+.....-. .+..|+.|.+..+.++
T Consensus 242 N~l---------~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NAL---------TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHH---------HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 977 35567888999999999999776554433 6677888888766644
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.22 E-value=4.4e-07 Score=100.28 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=93.5
Q ss_pred hcCCCeEEEccCCCc--ccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCC
Q 005744 208 IDEAPTAISIPFRGI--YELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 283 (679)
...++++|++++... ...+..+ .+|.|++|.+.+-.+...--...+.++++|+.||+|+++++.+ .++++|++|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 346789999988554 2333333 6899999999876654333344568899999999999999988 6799999999
Q ss_pred EEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhh-------hcCCCCCEEcccC
Q 005744 284 TLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREI-------GQLTCLKLLDLSN 334 (679)
Q Consensus 284 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i-------~~L~~L~~L~l~~ 334 (679)
.|.+++-.+.. ...+.+|++|++||+|...-..-+..+ ..|++||.||.++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99999887776 567888999999999987544333211 2377777777776
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.6e-08 Score=93.81 Aligned_cols=175 Identities=21% Similarity=0.187 Sum_probs=126.9
Q ss_pred CCCeEEEccCCCcc--cCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCc--CCccccCCcCCC
Q 005744 210 EAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHS--LPSSLGCLINLR 283 (679)
Q Consensus 210 ~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~--lp~~i~~l~~L~ 283 (679)
.+++++++++..++ .+...+ .+.+|+.|.+.++.+...+-..+ .+-.+|+.|+++.++ +++ +.--+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 46889999988773 333333 78899999999988776665554 677899999999876 553 233467899999
Q ss_pred EEEcCCcccCCcc---cccC-CCCCcEEEecCC--CCC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEE
Q 005744 284 TLSLENCLVVDVA---IIGD-LKKLEILSLKHS--SIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (679)
Q Consensus 284 ~L~L~~~~~~~~~---~i~~-L~~L~~L~l~~~--~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 355 (679)
.|++++|....+. .+.+ -.+|..|+++|+ ++. .+..-..++++|.+|||++|..++.-....|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 9999999876621 1111 257888999997 222 3433456899999999999887776333347789999999
Q ss_pred EccCCcccceeccCCcCChhhhhcCCCCceEEeecC
Q 005744 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (679)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 391 (679)
.++.|+.. .+..+-++...+.|.+|++.+.
T Consensus 344 SlsRCY~i------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDI------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCC------ChHHeeeeccCcceEEEEeccc
Confidence 99998642 1234456778888888888765
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=5e-07 Score=87.40 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=48.0
Q ss_pred CCcceeeeeeccCCcccC---CCchhhcCCCCccEEEeCCCcC----CcCCcc-------ccCCcCCCEEEcCCcccCC-
Q 005744 230 GFLKLKLFLFFTENLSLQ---IPDPFFEGMTELRVLDLTGFRF----HSLPSS-------LGCLINLRTLSLENCLVVD- 294 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~l----~~lp~~-------i~~l~~L~~L~L~~~~~~~- 294 (679)
.+..++.+++++|.+... .-...+.+.+.||.-++++-.- .++|+. +-.+++|++|+||.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 566777777777765432 1122345666777777776421 133432 3345567777777766543
Q ss_pred -c----ccccCCCCCcEEEecCCCCC
Q 005744 295 -V----AIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 295 -~----~~i~~L~~L~~L~l~~~~l~ 315 (679)
+ .-+.+...|++|.|.+|.+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC
Confidence 2 22445566666666666555
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2.8e-06 Score=57.41 Aligned_cols=37 Identities=41% Similarity=0.542 Sum_probs=17.6
Q ss_pred CccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC
Q 005744 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294 (679)
Q Consensus 258 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~ 294 (679)
+|++|++++|+++.+|..+++|++|++|++++|.+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555554445555555555555554443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=1.4e-06 Score=96.34 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=35.5
Q ss_pred CcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEE
Q 005744 279 LINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (679)
Q Consensus 279 l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 355 (679)
||.||.|.+++-.+.. -.-..++++|..||+++|+++.+ .++++|++|+.|.+.+-.....-.-..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 4445555554443332 12233445555555555555544 4455555555555444211110101114445555555
Q ss_pred EccCC
Q 005744 356 YMGNS 360 (679)
Q Consensus 356 ~l~~~ 360 (679)
|++..
T Consensus 226 DIS~~ 230 (699)
T KOG3665|consen 226 DISRD 230 (699)
T ss_pred ecccc
Confidence 55543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.2e-05 Score=54.34 Aligned_cols=32 Identities=44% Similarity=0.646 Sum_probs=16.0
Q ss_pred CCcEEEecCCCCCccchhhhcCCCCCEEcccC
Q 005744 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334 (679)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 334 (679)
+|++|++++|+|+.+|..+++|++|++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 45555555555555555455555555555555
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.94 E-value=8.7e-07 Score=85.79 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=119.3
Q ss_pred cCCCeEEEccCCCcc--cCCc---cc-CCcceeeeeeccCCcccCCC------------chhhcCCCCccEEEeCCCcCC
Q 005744 209 DEAPTAISIPFRGIY--ELPE---RL-GFLKLKLFLFFTENLSLQIP------------DPFFEGMTELRVLDLTGFRFH 270 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~--~l~~---~~-~~~~L~~L~l~~~~~~~~~~------------~~~~~~l~~L~~L~l~~~~l~ 270 (679)
.++++.++||+|-+. .++. .+ .+..|+.|.+.+|.+...-- ..-...-+.||++....|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 347888899888772 2332 22 67888888888776531100 011245678899999888876
Q ss_pred cC-----CccccCCcCCCEEEcCCcccCCc------ccccCCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccC
Q 005744 271 SL-----PSSLGCLINLRTLSLENCLVVDV------AIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSN 334 (679)
Q Consensus 271 ~l-----p~~i~~l~~L~~L~L~~~~~~~~------~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~ 334 (679)
.- -..+...+.|+.+.++.|.+... ..+..+++|++||++.|-++ .+...+..+++|++|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 43 33466678888888888877651 45778889999999988666 3444566778889998888
Q ss_pred Cccccc----cCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744 335 CSKLKE----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (679)
Q Consensus 335 ~~~l~~----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (679)
|.--.. +-...-...++|++|.+.+|.+...... .....+...+.|+.|++++|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~---~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL---ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH---HHHHHHhcchhhHHhcCCccccc
Confidence 742211 1111112367889999888876532211 12233445788888888888774
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=1e-06 Score=73.59 Aligned_cols=108 Identities=15% Similarity=0.228 Sum_probs=68.9
Q ss_pred CeEEEccCCCcccCCccc----CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 212 PTAISIPFRGIYELPERL----GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
...++++.+.+..+++.. +..+|...++++|.+. .+|+.+-..++.++.|++++|.+.++|..+..++.||.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344566666665444432 4556666666666654 56666655666677777777777777766777777777777
Q ss_pred CCcccCC-cccccCCCCCcEEEecCCCCCccchh
Q 005744 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE 320 (679)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 320 (679)
+.|++.. |..|..|.+|-+|+..++.+..+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 7776666 66666666666666666666666654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=4.1e-05 Score=68.74 Aligned_cols=62 Identities=29% Similarity=0.371 Sum_probs=26.2
Q ss_pred cCCCCccEEEeCCCcCCcCCcccc-CCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC
Q 005744 254 EGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 254 ~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~ 315 (679)
..++.|..|.+.+|+|+.+-+.+. .+++|..|.+.+|.+.. ...+..++.|++|.+-+|.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 344444444444444444422222 23334444444444433 233334444444444444433
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=7e-05 Score=76.42 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=92.1
Q ss_pred hhccccceEeeecCCCeeEEEeCCCcccccc-ccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccc
Q 005744 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (679)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~ 549 (679)
..++++++|++++| .++.++ .+| +|++|.+.+|.+++.++.. +| ++|+.|++++|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~-LP--------~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGS-IP--------EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCch-hh--------hhhhheEccCcccccccc
Confidence 45788999999998 566654 244 6999999999999877632 23 589999999998887764
Q ss_pred cHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccc
Q 005744 550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGII 629 (679)
Q Consensus 550 ~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~ 629 (679)
++|+.|++.+ .....+.. -.++|++|.+.++............| ++|+.+
T Consensus 112 --------~sLe~L~L~~-n~~~~L~~----------------LPssLk~L~I~~~n~~~~~~lp~~LP-----sSLk~L 161 (426)
T PRK15386 112 --------ESVRSLEIKG-SATDSIKN----------------VPNGLTSLSINSYNPENQARIDNLIS-----PSLKTL 161 (426)
T ss_pred --------cccceEEeCC-CCCccccc----------------CcchHhheeccccccccccccccccC-----CcccEE
Confidence 3688888763 33333321 23468888875432111111111112 456777
Q ss_pred cCCCCCCCccCccccccCCCcceeecccccc--ccccCCCcc
Q 005744 630 AEGDPKDFTSLFNERVVFPSLKKLKLSSINV--EKIWLNSFS 669 (679)
Q Consensus 630 ~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l--~~l~~~~~~ 669 (679)
.+.+|.... +|.. ..++|+.|.++.+.. ..++...+|
T Consensus 162 ~Is~c~~i~-LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP 200 (426)
T PRK15386 162 SLTGCSNII-LPEK--LPESLQSITLHIEQKTTWNISFEGFP 200 (426)
T ss_pred EecCCCccc-Cccc--ccccCcEEEecccccccccCcccccc
Confidence 777777552 2211 125899999987632 234544444
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00014 Score=74.29 Aligned_cols=131 Identities=20% Similarity=0.250 Sum_probs=81.3
Q ss_pred cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCC-cCCcCCccccCCcCCCEEEc
Q 005744 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~L 287 (679)
+..+++|++++|.+..+|. --.+|++|.++++.....+|..+ .++|++|++++| .+..+|.. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEe
Confidence 4678899999998888883 22369999998876655677544 358899999988 67777754 666777
Q ss_pred CCcccCCcccccCC-CCCcEEEecCCC-C--CccchhhhcC-CCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744 288 ENCLVVDVAIIGDL-KKLEILSLKHSS-I--EQLPREIGQL-TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (679)
Q Consensus 288 ~~~~~~~~~~i~~L-~~L~~L~l~~~~-l--~~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (679)
+++.... +..+ .+|+.|.+.+++ . ..+|. .+ .+|++|++.+|..+ .+|.. +. .+|+.|.++.+
T Consensus 120 ~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-cc--ccCcEEEeccc
Confidence 6554322 1222 235566664322 1 11121 12 47888888876643 34433 33 47777777654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=5.6e-05 Score=67.87 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=83.9
Q ss_pred cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC--CccccCCcCCCEEE
Q 005744 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLS 286 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~ 286 (679)
......+++++|++..++....+++|.+|.+..|.++ .+.+.+-..+++|..|.+.+|++.++ -..+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3467789999999988877778999999999999988 55555656788999999999998865 33477899999999
Q ss_pred cCCcccCC-c----ccccCCCCCcEEEecCC
Q 005744 287 LENCLVVD-V----AIIGDLKKLEILSLKHS 312 (679)
Q Consensus 287 L~~~~~~~-~----~~i~~L~~L~~L~l~~~ 312 (679)
+-+|.... . --+.++++|++||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99998876 2 45778888888888764
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=4.5e-06 Score=69.81 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=85.0
Q ss_pred cceeeeeeccCCcccCCCchh--hcCCCCccEEEeCCCcCCcCCccccCC-cCCCEEEcCCcccCC-cccccCCCCCcEE
Q 005744 232 LKLKLFLFFTENLSLQIPDPF--FEGMTELRVLDLTGFRFHSLPSSLGCL-INLRTLSLENCLVVD-VAIIGDLKKLEIL 307 (679)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~l~~lp~~i~~l-~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 307 (679)
..+..++|++|.+. .+++.. +....+|...++++|.++++|+.+... +.+.+|++.+|.+.+ |..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 34555667666543 233322 245678888899999999998877644 488899999999988 8889999999999
Q ss_pred EecCCCCCccchhhhcCCCCCEEcccCCccccccCcc
Q 005744 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPN 344 (679)
Q Consensus 308 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 344 (679)
+++.|.+...|..|..|.+|-.|+..+ +....+|-+
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 999999998898888888888888887 566666654
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=1.4e-05 Score=75.69 Aligned_cols=81 Identities=26% Similarity=0.343 Sum_probs=48.8
Q ss_pred cCCCCccEEEeCCCcCCc---CCccccCCcCCCEEEcCCcccCC-cccc-cCCCCCcEEEecCCCCC--ccchhhhcCCC
Q 005744 254 EGMTELRVLDLTGFRFHS---LPSSLGCLINLRTLSLENCLVVD-VAII-GDLKKLEILSLKHSSIE--QLPREIGQLTC 326 (679)
Q Consensus 254 ~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L~l~~~~l~--~lp~~i~~L~~ 326 (679)
....+++.|||.+|.+.. +-..+.++++|++|+++.|++.. +... ..+.+|++|-|.|+.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566667777766653 33334566777777777776655 4444 35567777777776443 44445556666
Q ss_pred CCEEcccC
Q 005744 327 LKLLDLSN 334 (679)
Q Consensus 327 L~~L~l~~ 334 (679)
+++|+++.
T Consensus 148 vtelHmS~ 155 (418)
T KOG2982|consen 148 VTELHMSD 155 (418)
T ss_pred hhhhhhcc
Confidence 66666665
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=2.7e-05 Score=73.91 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=30.0
Q ss_pred ccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCc
Q 005744 473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545 (679)
Q Consensus 473 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 545 (679)
||++..+.+..|+- +.... ......+|.+-.|.+.. +++.+|... .+...||.|..|.+.+.|-+
T Consensus 198 Fpnv~sv~v~e~Pl-K~~s~-ek~se~~p~~~~LnL~~-~~idswasv-----D~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPL-KTESS-EKGSEPFPSLSCLNLGA-NNIDSWASV-----DALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcc-cchhh-cccCCCCCcchhhhhcc-cccccHHHH-----HHHcCCchhheeeccCCccc
Confidence 45555555555541 11111 11223455555555555 455554321 11345666666666654433
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=2.4e-05 Score=73.54 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=57.1
Q ss_pred CcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEc
Q 005744 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYM 357 (679)
Q Consensus 279 l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l 357 (679)
+.+.+.|++.||.+.++....+++.|++|.|+-|+|+.+.. +..+++|++|+|+. +.+.++.. ..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 45566777777777777777777888888888888777743 67778888888777 45555432 22566777777777
Q ss_pred cCCcc
Q 005744 358 GNSFT 362 (679)
Q Consensus 358 ~~~~~ 362 (679)
..|..
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 76644
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00056 Score=64.39 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCCccEEEeCCC--cCC-cCCccccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC
Q 005744 255 GMTELRVLDLTGF--RFH-SLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 255 ~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~ 315 (679)
.+++|+.|+++.| ++. .++....++++|++|++++|++.. ...+.++.+|..|++..|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4555555555555 222 333334444566666666655543 333444555555555555444
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.76 E-value=0.00027 Score=77.08 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=44.4
Q ss_pred hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccccc
Q 005744 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP 550 (679)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 550 (679)
..+++|+.|+++.|..+....- ......+|+|++|.+.+|..++.-.-..+ ...++.|++|++++|..+++-.-
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt~~gl~~i-----~~~~~~L~~L~l~~c~~~~d~~l 313 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLTDEGLVSI-----AERCPSLRELDLSGCHGLTDSGL 313 (482)
T ss_pred hhcCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccchhHHHHH-----HHhcCcccEEeeecCccchHHHH
Confidence 3456666666666654322110 00012356677776666665433211111 23456677777777766544322
Q ss_pred HHHHHHhhcCcEEEEccc
Q 005744 551 FSLVKNLLQLQKVKVTDC 568 (679)
Q Consensus 551 ~~~~~~l~~L~~L~i~~c 568 (679)
.....++++|+.|.+.++
T Consensus 314 ~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 314 EALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHHhCcchhhhhhhhc
Confidence 222444565555544443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.73 E-value=0.001 Score=62.62 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=48.2
Q ss_pred cCCCCccEEEeCCCcCC-----cCCccccCCcCCCEEEcCCcccCC-----c-------ccccCCCCCcEEEecCCCCC-
Q 005744 254 EGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD-----V-------AIIGDLKKLEILSLKHSSIE- 315 (679)
Q Consensus 254 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~-------~~i~~L~~L~~L~l~~~~l~- 315 (679)
..+..+..++||||.|. .+...|.+-.+|+..+++.-.... + +.+-++++|+..+|+.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34778888888888875 355566667777777776543211 1 23445666666666666444
Q ss_pred ccch----hhhcCCCCCEEcccC
Q 005744 316 QLPR----EIGQLTCLKLLDLSN 334 (679)
Q Consensus 316 ~lp~----~i~~L~~L~~L~l~~ 334 (679)
..|. -|.+-+.|.||.+++
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeec
Confidence 3332 244555566666655
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00081 Score=63.34 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc--ccCC--cccccCCCCCcEEEecCCCCC
Q 005744 256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC--LVVD--VAIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 256 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~--~~~~--~~~i~~L~~L~~L~l~~~~l~ 315 (679)
+..|..|++.+..++.+- .+-.|++|++|.++.| .+.. +....++++|++|++++|+++
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444433221 1223445555555555 2222 222333355555555555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00013 Score=68.64 Aligned_cols=96 Identities=25% Similarity=0.266 Sum_probs=61.9
Q ss_pred cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC---cccccCCCCCcEEE
Q 005744 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILS 308 (679)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~ 308 (679)
.+.+.|++.++.+. .+ ++..+|+.|++|.||-|.|+.+- .+..|++|+.|+|+.|.|.+ ...+.++++|++|.
T Consensus 19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34444555554443 11 24577888888888888888774 36778888888888888776 45667777778877
Q ss_pred ecCCCCC-ccch-----hhhcCCCCCEEc
Q 005744 309 LKHSSIE-QLPR-----EIGQLTCLKLLD 331 (679)
Q Consensus 309 l~~~~l~-~lp~-----~i~~L~~L~~L~ 331 (679)
|..|.-. .-+. .+.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776222 2111 245666777664
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.31 E-value=0.0019 Score=60.96 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=24.9
Q ss_pred cccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCC
Q 005744 275 SLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 275 ~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~ 315 (679)
.+-+|++|+..+|+.|.+.. | +.|.+-+.|.+|.+++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34566666666666665543 2 33556666777777776555
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.0011 Score=59.84 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=52.3
Q ss_pred ccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccch
Q 005744 498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLK 572 (679)
Q Consensus 498 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~ 572 (679)
..+++++.|.+.+|..+.+|+-+.+. +-.|+|+.|+|++|+++++- ....+..+++|+.|.+.+.+...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 46777888888888888888755444 36788999999999888876 45567778888888888766443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.22 E-value=0.0015 Score=71.27 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=83.6
Q ss_pred hhcccccccccccCcccc--cccccchhhccccceEeeecC-CCeeEEEeC-CCccccccccceeeccccccccccccCc
Q 005744 446 LKRTEDLHLDELAGFKNV--VHELDDEEGFARLRHLHVHNG-PEILHILNS-DGRVGTFPLLESLFLHNLINLEKVCDGK 521 (679)
Q Consensus 446 l~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~-~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 521 (679)
.+.|+.|.+.+|..+... .... ..+++|+.|++++| ......... ......+++|+.|++..|..+++..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 578899999988777652 2333 67899999999884 222211100 1122466899999999988766543222
Q ss_pred ccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL 573 (679)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 573 (679)
+. ..+++|+.|.+.+|..+++..-......+++|++|++++|..+.+
T Consensus 264 l~-----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 264 LA-----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred HH-----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 21 237899999999999877765455677899999999999988743
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.14 E-value=0.0022 Score=35.87 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=13.8
Q ss_pred CCcEEEecCCCCCccchhhhc
Q 005744 303 KLEILSLKHSSIEQLPREIGQ 323 (679)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~ 323 (679)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777766544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0028 Score=35.47 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=14.5
Q ss_pred CccEEEeCCCcCCcCCccccC
Q 005744 258 ELRVLDLTGFRFHSLPSSLGC 278 (679)
Q Consensus 258 ~L~~L~l~~~~l~~lp~~i~~ 278 (679)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.45 E-value=0.044 Score=47.36 Aligned_cols=101 Identities=17% Similarity=0.331 Sum_probs=35.8
Q ss_pred hhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCC
Q 005744 252 FFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCL 327 (679)
Q Consensus 252 ~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L 327 (679)
.|.++++|+.+.+.. .++.++ ..+.++.+|+.+.+.++ +.. ...+.++.+|+.+.+.. .+..++.. +..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444455555443 233332 23444444555555443 322 23344444455555543 33333322 3335555
Q ss_pred CEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744 328 KLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (679)
Q Consensus 328 ~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (679)
+.+.+.. .+..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 5555543 2344444444444 55555543
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.45 E-value=0.052 Score=46.90 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=64.0
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (679)
++++|+.+.+.. .+ ..++...|..++.|+.+.+.++ +..++ ..+.++..|+.+.+.+ .+.. ...+....+|+.
T Consensus 10 ~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 667888888874 33 3677777889989999999885 77664 4577787899999976 3333 566778899999
Q ss_pred EEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCc
Q 005744 307 LSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (679)
Q Consensus 307 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~ 353 (679)
+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 999765 6666554 5565 888887764 55666666666666553
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.42 E-value=0.0082 Score=31.09 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=12.0
Q ss_pred CCcceeecccccccccc
Q 005744 648 PSLKKLKLSSINVEKIW 664 (679)
Q Consensus 648 p~L~~L~l~~~~l~~l~ 664 (679)
|+|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 68999999999999887
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0025 Score=57.67 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=54.7
Q ss_pred ccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCC
Q 005744 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (679)
Q Consensus 528 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~ 607 (679)
...++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+.+++-.-. .+..|++|+.|.|.+.|.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~------------~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA------------CLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH------------HHHHhhhhHHHHhcCchh
Confidence 34678889999999998887632222234689999999999999876433 567899999999999876
Q ss_pred ccc
Q 005744 608 LTS 610 (679)
Q Consensus 608 L~~ 610 (679)
...
T Consensus 189 v~~ 191 (221)
T KOG3864|consen 189 VAN 191 (221)
T ss_pred hhc
Confidence 554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.59 E-value=0.026 Score=29.21 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=7.7
Q ss_pred CCcEEEecCCCCCccc
Q 005744 303 KLEILSLKHSSIEQLP 318 (679)
Q Consensus 303 ~L~~L~l~~~~l~~lp 318 (679)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.90 E-value=0.0032 Score=58.01 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=27.6
Q ss_pred CCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCC
Q 005744 256 MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSS 313 (679)
Q Consensus 256 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~ 313 (679)
++.|..||++.|.+..+|..++.+..++.+++..|..+. |.+++++++++++++.+|.
T Consensus 64 ~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 344444445444444444444444444444444444444 4444444444444444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.41 E-value=0.07 Score=31.16 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.8
Q ss_pred CCCcceeeccccccccccCCCcc
Q 005744 647 FPSLKKLKLSSINVEKIWLNSFS 669 (679)
Q Consensus 647 ~p~L~~L~l~~~~l~~l~~~~~~ 669 (679)
+++|+.|++++|.++.||.+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 47899999999999999998875
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.41 E-value=0.07 Score=31.16 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.8
Q ss_pred CCCcceeeccccccccccCCCcc
Q 005744 647 FPSLKKLKLSSINVEKIWLNSFS 669 (679)
Q Consensus 647 ~p~L~~L~l~~~~l~~l~~~~~~ 669 (679)
+++|+.|++++|.++.||.+.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 47899999999999999998875
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.63 E-value=0.005 Score=56.81 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=71.6
Q ss_pred hcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEc
Q 005744 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (679)
Q Consensus 253 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 331 (679)
+..++..++||++.|++..+-..++.+..|..|+++.+.+.. |..++.+..++.+++..|+.+..|.++++++.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 366788889999998888887788888888899999888888 8889989899999998888899999999999999988
Q ss_pred ccCC
Q 005744 332 LSNC 335 (679)
Q Consensus 332 l~~~ 335 (679)
+.++
T Consensus 118 ~k~~ 121 (326)
T KOG0473|consen 118 QKKT 121 (326)
T ss_pred hccC
Confidence 8774
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.23 E-value=0.19 Score=29.27 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=14.2
Q ss_pred CCCCcEEEecCCCCCccchhh
Q 005744 301 LKKLEILSLKHSSIEQLPREI 321 (679)
Q Consensus 301 L~~L~~L~l~~~~l~~lp~~i 321 (679)
|++|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.23 E-value=0.19 Score=29.27 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=14.2
Q ss_pred CCCCcEEEecCCCCCccchhh
Q 005744 301 LKKLEILSLKHSSIEQLPREI 321 (679)
Q Consensus 301 L~~L~~L~l~~~~l~~lp~~i 321 (679)
|++|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.28 E-value=0.92 Score=53.91 Aligned_cols=150 Identities=13% Similarity=0.219 Sum_probs=91.5
Q ss_pred ceecc----CCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCc
Q 005744 9 DFLDW----LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (679)
Q Consensus 9 ~~~~~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~ 84 (679)
..+++ +++.+|+.++|....+..- -.+...++.+.|+|.|+++..++..++..... -......+.......
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 250 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASH 250 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchh
Confidence 44555 9999999999988765322 14457789999999999999888777643210 011111111000000
Q ss_pred cccccccccee-eeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhccc
Q 005744 85 IQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASL 163 (679)
Q Consensus 85 ~~~~~~~~~~l-~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~~~ 163 (679)
+ ...+ .--++.||.+ .+..+...|+++ .++.+ +.... .... -..+.+++|.+.++
T Consensus 251 ~------~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l-----~~~~--------~~~~~L~~l~~~~l 306 (903)
T PRK04841 251 L------SDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRV-----TGEE--------NGQMRLEELERQGL 306 (903)
T ss_pred H------HHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHH-----cCCC--------cHHHHHHHHHHCCC
Confidence 1 1111 1236789998 899999999986 34433 22211 1111 11356778888888
Q ss_pred ccc-CC-CCCceEehhhHHHHHHHHH
Q 005744 164 LFD-GD-SEDHAKMHRIIHAIAVSIA 187 (679)
Q Consensus 164 ~~~-~~-~~~~~~mhdli~~l~~~~~ 187 (679)
+.. .+ +...|+.|++++++.....
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHH
Confidence 653 22 3457899999999998764
No 85
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.25 E-value=24 Score=36.06 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=38.9
Q ss_pred CceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 005744 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIAN 60 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~ 60 (679)
.++++++++.++..+++.+.+......-+ .+....|++.|+|.|-.+..+..
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHH
Confidence 46899999999999999998863322222 46788999999999955544443
No 86
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.97 E-value=21 Score=35.97 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 005744 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIAN 60 (679)
Q Consensus 7 ~~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~ 60 (679)
..++++++++.+|..+++.+.+......-+ .+....|++.|+|.|-.+..++.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHH
Confidence 356899999999999999998863222212 46778899999999966654444
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.10 E-value=0.95 Score=26.27 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.6
Q ss_pred CCcceeeccccccccccC
Q 005744 648 PSLKKLKLSSINVEKIWL 665 (679)
Q Consensus 648 p~L~~L~l~~~~l~~l~~ 665 (679)
++|+.|.+++|+|+++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 689999999999999986
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.01 E-value=1.1 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=12.8
Q ss_pred ccccceeeccCCCCccc
Q 005744 594 FRKLHFLKLQHLPQLTS 610 (679)
Q Consensus 594 l~~L~~L~l~~cp~L~~ 610 (679)
+|+|++|+|++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36788888888887765
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.64 E-value=0.022 Score=60.83 Aligned_cols=178 Identities=19% Similarity=0.169 Sum_probs=102.5
Q ss_pred CeEEEccCCCcccC-----Cccc-CCcceeeeeeccCCcccCCCchh---hcCC-CCccEEEeCCCcCC-----cCCccc
Q 005744 212 PTAISIPFRGIYEL-----PERL-GFLKLKLFLFFTENLSLQIPDPF---FEGM-TELRVLDLTGFRFH-----SLPSSL 276 (679)
Q Consensus 212 l~~l~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~~~~~~~---~~~l-~~L~~L~l~~~~l~-----~lp~~i 276 (679)
+.++++.+|.+..- .... ..+.|..|++++|++...--..+ +... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777776332 2222 57778888888887652211111 1121 45677777777765 245566
Q ss_pred cCCcCCCEEEcCCcccCC------cccc----cCCCCCcEEEecCCCCCc-----cchhhhcCCC-CCEEcccCCccccc
Q 005744 277 GCLINLRTLSLENCLVVD------VAII----GDLKKLEILSLKHSSIEQ-----LPREIGQLTC-LKLLDLSNCSKLKE 340 (679)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~------~~~i----~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~-L~~L~l~~~~~l~~ 340 (679)
....+++.++++.|.+.. +..+ ....++++|.+++|.++. +-..+...+. +..|++.. +.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcch
Confidence 667788888888887643 2223 346778888888887662 1122444555 66677766 34433
Q ss_pred c-----CcccccCC-CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744 341 I-----RPNVISNL-TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (679)
Q Consensus 341 l-----p~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (679)
. .+. +..+ ..++++++..|.+..... ......+....+++.+.++.|.+.
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~---~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV---RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccccch---HHHHHHHhhhHHHHHhhcccCccc
Confidence 2 122 4444 567788887776643211 122344455567777777766554
No 90
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=77.34 E-value=9.9 Score=37.50 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=52.4
Q ss_pred CCceeccCCCHHHHHHHHHHHhC--CCCCCC-ChHHHHHHHHHHhCCcchHHHHHHHHhc------CC---ChHHHHHHH
Q 005744 7 SEDFLDWLLSNEEASHLFEKIVG--HSAKKS-DFETIGVEIVAKCGGLPIAIKTIANALK------NK---SPRIWKDAV 74 (679)
Q Consensus 7 ~~~~~~~~L~~~~~~~Lf~~~~~--~~~~~~-~~~~~~~~i~~~c~GlPLai~~ig~~L~------~~---~~~~W~~~~ 74 (679)
...+++++++.+|..+++...+. +..... --.+..+.|++.++|.|..|..++..+. ++ +.+.++.++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVI 263 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 34678999999999999988774 211111 2257899999999999999998888771 12 667777776
Q ss_pred HHh
Q 005744 75 NQL 77 (679)
Q Consensus 75 ~~l 77 (679)
..+
T Consensus 264 ~~~ 266 (269)
T TIGR03015 264 AEI 266 (269)
T ss_pred HHh
Confidence 654
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.87 E-value=3.5 Score=24.07 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=10.7
Q ss_pred CCCCcEEEecCCCCCcc
Q 005744 301 LKKLEILSLKHSSIEQL 317 (679)
Q Consensus 301 L~~L~~L~l~~~~l~~l 317 (679)
+.+|+.|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35667777777766543
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.66 E-value=8.3 Score=21.68 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=4.4
Q ss_pred CCcEEEecCCCC
Q 005744 303 KLEILSLKHSSI 314 (679)
Q Consensus 303 ~L~~L~l~~~~l 314 (679)
+|++|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.37 E-value=12 Score=22.08 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=7.0
Q ss_pred CccEEEeCCCcCC
Q 005744 258 ELRVLDLTGFRFH 270 (679)
Q Consensus 258 ~L~~L~l~~~~l~ 270 (679)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.03 E-value=13 Score=39.66 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=35.8
Q ss_pred HHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCcc----ccccccceeecc
Q 005744 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRV----GTFPLLESLFLH 509 (679)
Q Consensus 442 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~L~~L~l~ 509 (679)
+....|+|..|+|++|........++.. -+..-|++|-+.||+-.+......... ..||+|..|+=.
T Consensus 239 lsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 239 LSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCc
Confidence 3334577777777776333222333322 234557777788877555432211111 367777776643
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=31.66 E-value=1.1e+02 Score=29.18 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=38.7
Q ss_pred CCCCceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHH
Q 005744 5 EYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIK 56 (679)
Q Consensus 5 ~~~~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 56 (679)
+...+++++++++++.+++++++++.....-+ +++.+-|++.+.|-.=++.
T Consensus 151 ~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~-~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 151 TWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS-DEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred hcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhccCCHHHHH
Confidence 44578999999999999999999974332222 5678889999987665554
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.59 E-value=32 Score=36.90 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=31.4
Q ss_pred cCCCCccEEEeCCCcCCcC---CccccCCcCCCEEEcCCc--ccCCcccccCC--CCCcEEEecCCCCC
Q 005744 254 EGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENC--LVVDVAIIGDL--KKLEILSLKHSSIE 315 (679)
Q Consensus 254 ~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~L~~~--~~~~~~~i~~L--~~L~~L~l~~~~l~ 315 (679)
.+.+.+..++|++|++..+ ..--...++|..|+|++| .+..-..+.++ ..|+.|-+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3455555666666665432 222234456666666666 33332233322 23566666666554
No 97
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=21.13 E-value=58 Score=17.71 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=13.6
Q ss_pred cceeeccccccccccCC
Q 005744 650 LKKLKLSSINVEKIWLN 666 (679)
Q Consensus 650 L~~L~l~~~~l~~l~~~ 666 (679)
|-.|++.+.+++.+|.+
T Consensus 2 LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWEG 18 (20)
T ss_pred cEEEECCCCChHHhcCc
Confidence 56788888889988876
Done!