Query 005744
Match_columns 679
No_of_seqs 483 out of 4312
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 5.1E-33 1.7E-37 310.9 30.5 357 196-568 19-435 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-33 3E-37 308.9 27.8 434 196-666 18-539 (606)
3 2z63_A TOLL-like receptor 4, v 100.0 6.9E-32 2.4E-36 299.5 25.8 427 196-662 14-532 (570)
4 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-31 2.2E-35 293.8 28.6 415 212-671 13-520 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-31 2.5E-35 303.3 29.9 361 195-568 10-436 (844)
6 3rgz_A Protein brassinosteroid 100.0 3E-31 1E-35 303.3 26.4 429 210-670 178-702 (768)
7 3rgz_A Protein brassinosteroid 100.0 1.8E-31 6.2E-36 305.2 24.5 421 208-669 98-560 (768)
8 3t6q_A CD180 antigen; protein- 100.0 9.7E-31 3.3E-35 292.4 29.8 436 212-672 14-524 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-30 3.9E-35 295.8 30.8 452 197-673 12-561 (680)
10 4ecn_A Leucine-rich repeat pro 100.0 1E-31 3.6E-36 304.8 20.9 390 210-668 323-847 (876)
11 4eco_A Uncharacterized protein 100.0 1.3E-31 4.6E-36 299.2 19.8 353 248-668 198-607 (636)
12 2z81_A CD282 antigen, TOLL-lik 100.0 4.2E-31 1.4E-35 291.7 21.1 415 198-660 14-509 (549)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-29 4.3E-34 287.2 32.5 434 207-668 46-604 (680)
14 2z63_A TOLL-like receptor 4, v 100.0 1.2E-29 4E-34 281.6 23.1 421 212-672 9-518 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-29 7.8E-34 275.7 23.1 142 213-362 3-150 (520)
16 4eco_A Uncharacterized protein 100.0 1.3E-29 4.6E-34 283.0 20.3 343 224-608 197-600 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 3E-29 1E-33 284.7 21.5 342 225-607 440-839 (876)
18 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-28 8.3E-33 282.2 29.0 423 213-669 7-525 (844)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-29 1.3E-33 273.9 18.7 417 199-661 10-481 (520)
20 1o6v_A Internalin A; bacterial 100.0 3E-28 1E-32 262.5 24.9 349 207-614 43-393 (466)
21 4g8a_A TOLL-like receptor 4; l 100.0 9.5E-28 3.3E-32 269.9 30.0 440 196-670 38-564 (635)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1E-28 3.6E-33 272.5 20.8 156 207-364 47-210 (549)
23 3v47_A TOLL-like receptor 5B a 100.0 3.1E-28 1.1E-32 262.1 19.4 372 196-606 17-406 (455)
24 1o6v_A Internalin A; bacterial 100.0 2.4E-27 8.2E-32 255.5 26.2 348 230-666 44-393 (466)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 4.2E-32 264.2 21.7 402 213-661 34-510 (562)
26 4fmz_A Internalin; leucine ric 100.0 1.1E-26 3.7E-31 240.6 26.2 303 208-606 42-344 (347)
27 3v47_A TOLL-like receptor 5B a 99.9 3.9E-26 1.3E-30 245.7 27.5 375 212-663 12-410 (455)
28 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-26 9.5E-31 245.1 25.6 264 207-518 39-303 (457)
29 3o6n_A APL1; leucine-rich repe 99.9 3.6E-26 1.2E-30 240.6 25.9 306 228-606 41-350 (390)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-26 3.9E-31 256.5 20.4 135 197-336 39-180 (562)
31 1jl5_A Outer protein YOPM; leu 99.9 1.5E-26 5.1E-31 247.0 19.7 224 209-458 10-248 (454)
32 4fmz_A Internalin; leucine ric 99.9 1.4E-25 4.9E-30 232.1 24.9 287 201-569 56-344 (347)
33 3oja_B Anopheles plasmodium-re 99.9 1.4E-25 4.9E-30 249.0 25.9 305 229-606 48-356 (597)
34 2id5_A Lingo-1, leucine rich r 99.9 5.2E-25 1.8E-29 238.3 26.4 259 213-484 14-282 (477)
35 3o6n_A APL1; leucine-rich repe 99.9 1.3E-25 4.4E-30 236.3 20.9 302 208-569 43-350 (390)
36 4g8a_A TOLL-like receptor 4; l 99.9 8.4E-25 2.9E-29 245.9 27.5 424 214-674 35-544 (635)
37 3bz5_A Internalin-J, INLJ; leu 99.9 7.1E-25 2.4E-29 234.2 23.9 353 230-667 40-394 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 9.4E-25 3.2E-29 236.3 23.4 314 235-606 14-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 7E-25 2.4E-29 243.5 20.8 302 208-569 49-356 (597)
40 2a5y_B CED-4; apoptosis; HET: 99.9 4.1E-26 1.4E-30 249.4 8.0 174 6-191 284-472 (549)
41 1jl5_A Outer protein YOPM; leu 99.9 3.3E-23 1.1E-27 221.1 26.5 300 210-573 71-371 (454)
42 2ft3_A Biglycan; proteoglycan, 99.9 9.2E-24 3.2E-28 216.9 19.3 154 233-399 34-190 (332)
43 1xku_A Decorin; proteoglycan, 99.9 5.4E-23 1.9E-27 211.0 22.5 154 233-398 32-188 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 2E-22 6.9E-27 206.9 20.0 292 211-569 34-331 (332)
45 1xku_A Decorin; proteoglycan, 99.9 7.1E-22 2.4E-26 202.7 23.3 237 211-484 32-273 (330)
46 1ogq_A PGIP-2, polygalacturona 99.9 9.3E-23 3.2E-27 207.1 16.0 245 210-515 50-305 (313)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-22 6.4E-27 204.9 15.1 248 232-548 50-307 (313)
48 4fcg_A Uncharacterized protein 99.9 5.1E-22 1.8E-26 202.9 17.2 220 231-510 80-310 (328)
49 2z80_A TOLL-like receptor 2, v 99.9 5.2E-22 1.8E-26 205.7 16.7 194 213-415 34-234 (353)
50 3zyj_A Leucine-rich repeat-con 99.9 2.7E-21 9.4E-26 206.5 20.2 242 212-485 45-290 (440)
51 3zyi_A Leucine-rich repeat-con 99.9 3.2E-21 1.1E-25 206.7 20.0 243 211-485 55-301 (452)
52 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-21 1.1E-25 193.3 18.8 193 197-398 19-218 (285)
53 2z66_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 195.7 16.8 242 214-485 11-259 (306)
54 4fcg_A Uncharacterized protein 99.9 2.2E-21 7.6E-26 198.2 15.7 218 208-456 79-310 (328)
55 3ogk_B Coronatine-insensitive 99.9 1E-22 3.5E-27 226.7 5.8 351 230-606 110-499 (592)
56 2z80_A TOLL-like receptor 2, v 99.9 9.9E-21 3.4E-25 196.0 20.3 226 230-484 29-259 (353)
57 1z7x_W Ribonuclease inhibitor; 99.8 4.6E-23 1.6E-27 222.1 -3.3 356 210-605 3-408 (461)
58 1ozn_A Reticulon 4 receptor; N 99.8 6.4E-20 2.2E-24 183.9 19.4 175 212-396 13-192 (285)
59 2z66_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 187.0 17.9 261 197-467 15-294 (306)
60 2p1m_B Transport inhibitor res 99.8 1.7E-21 5.8E-26 217.0 6.9 130 230-360 103-245 (594)
61 3zyj_A Leucine-rich repeat-con 99.8 6.8E-20 2.3E-24 195.7 19.0 208 195-413 49-265 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 7.9E-24 197.2 23.1 260 209-548 39-299 (622)
63 3zyi_A Leucine-rich repeat-con 99.8 8.5E-20 2.9E-24 195.6 18.8 209 195-414 60-277 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.8 2E-21 6.8E-26 197.9 4.8 286 212-547 12-301 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-19 1.2E-23 195.9 22.5 246 198-485 49-295 (622)
66 1z7x_W Ribonuclease inhibitor; 99.8 7.3E-22 2.5E-26 212.7 1.1 368 207-607 25-439 (461)
67 3ogk_B Coronatine-insensitive 99.8 1.7E-21 5.9E-26 216.8 3.4 373 208-610 110-527 (592)
68 3o53_A Protein LRIM1, AGAP0063 99.8 7.9E-20 2.7E-24 186.0 10.7 236 207-485 31-273 (317)
69 1p9a_G Platelet glycoprotein I 99.8 1.5E-18 5.2E-23 173.7 17.8 193 208-411 8-203 (290)
70 2o6q_A Variable lymphocyte rec 99.8 2.9E-18 1E-22 170.1 19.8 191 210-410 16-212 (270)
71 2z62_A TOLL-like receptor 4, v 99.8 7E-19 2.4E-23 175.4 14.5 203 198-410 16-231 (276)
72 2o6q_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 170.4 18.6 189 197-394 24-218 (270)
73 2p1m_B Transport inhibitor res 99.8 1.2E-20 4E-25 210.2 1.5 370 207-607 102-518 (594)
74 1wwl_A Monocyte differentiatio 99.8 2.9E-20 1E-24 188.7 3.9 180 210-395 43-242 (312)
75 1h6u_A Internalin H; cell adhe 99.8 4E-18 1.4E-22 172.4 19.4 192 207-415 38-229 (308)
76 3oja_A Leucine-rich immune mol 99.8 2.6E-19 8.9E-24 192.9 10.0 237 231-511 33-272 (487)
77 2z62_A TOLL-like receptor 4, v 99.8 5.5E-18 1.9E-22 168.9 18.3 176 214-397 11-193 (276)
78 3rfs_A Internalin B, repeat mo 99.8 1.4E-18 4.8E-23 172.6 12.3 175 207-392 38-216 (272)
79 3oja_A Leucine-rich immune mol 99.8 1E-18 3.5E-23 188.2 11.7 187 208-413 32-224 (487)
80 1wwl_A Monocyte differentiatio 99.8 2.6E-19 8.9E-24 181.7 6.6 219 211-459 64-308 (312)
81 1h6u_A Internalin H; cell adhe 99.8 2.1E-18 7.1E-23 174.5 12.2 204 217-459 26-229 (308)
82 2xwt_C Thyrotropin receptor; s 99.8 4E-18 1.4E-22 165.9 12.8 199 201-410 23-233 (239)
83 1p9a_G Platelet glycoprotein I 99.8 1.1E-17 3.8E-22 167.4 16.1 186 197-394 18-208 (290)
84 3sfz_A APAF-1, apoptotic pepti 99.7 3.3E-18 1.1E-22 207.3 13.7 171 4-190 274-452 (1249)
85 3m19_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 160.6 18.0 176 210-395 14-193 (251)
86 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.7E-22 162.8 12.5 165 221-397 22-196 (239)
87 3rfs_A Internalin B, repeat mo 99.7 1.1E-16 3.6E-21 159.0 19.1 188 215-414 24-216 (272)
88 1h6t_A Internalin B; cell adhe 99.7 5.8E-17 2E-21 162.4 16.1 173 208-397 44-216 (291)
89 3m19_A Variable lymphocyte rec 99.7 8.9E-17 3E-21 157.5 16.2 165 197-363 22-192 (251)
90 1vt4_I APAF-1 related killer D 99.7 8.9E-18 3E-22 186.3 9.6 144 8-184 285-437 (1221)
91 1h6t_A Internalin B; cell adhe 99.7 5.9E-17 2E-21 162.3 12.0 184 215-415 29-212 (291)
92 4ay9_X Follicle-stimulating ho 99.7 1.3E-16 4.4E-21 164.6 13.9 146 215-362 14-166 (350)
93 4glp_A Monocyte differentiatio 99.7 4.5E-17 1.5E-21 165.1 9.4 151 210-362 91-263 (310)
94 2ast_B S-phase kinase-associat 99.7 3E-17 1E-21 168.6 8.2 126 232-360 70-205 (336)
95 2ast_B S-phase kinase-associat 99.7 2.5E-17 8.4E-22 169.3 6.2 132 253-391 64-205 (336)
96 3e6j_A Variable lymphocyte rec 99.7 1.1E-15 3.7E-20 147.3 16.1 149 212-363 21-172 (229)
97 4ay9_X Follicle-stimulating ho 99.7 5.4E-16 1.9E-20 159.9 14.8 117 236-357 13-135 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.7 6.3E-16 2.1E-20 147.9 14.1 149 213-363 14-166 (220)
99 1m9s_A Internalin B; cell inva 99.7 5E-16 1.7E-20 170.6 15.2 175 207-398 40-214 (605)
100 2o6s_A Variable lymphocyte rec 99.7 7.5E-16 2.6E-20 146.3 13.7 169 213-398 10-183 (208)
101 4glp_A Monocyte differentiatio 99.7 5.7E-16 1.9E-20 157.0 13.3 220 210-435 64-306 (310)
102 4ezg_A Putative uncharacterize 99.6 8.7E-16 3E-20 144.3 13.2 148 208-362 42-193 (197)
103 2v9t_B SLIT homolog 2 protein 99.6 1.3E-15 4.6E-20 145.6 14.4 148 213-363 14-165 (220)
104 2ca6_A RAN GTPase-activating p 99.6 5.4E-17 1.8E-21 170.1 4.8 184 207-394 29-257 (386)
105 4ezg_A Putative uncharacterize 99.6 1.2E-15 4E-20 143.5 13.3 151 230-395 42-195 (197)
106 1xeu_A Internalin C; cellular 99.6 2.7E-16 9.2E-21 154.9 9.2 172 208-397 17-188 (263)
107 1m9s_A Internalin B; cell inva 99.6 3.6E-16 1.2E-20 171.7 10.3 187 211-414 22-208 (605)
108 3cvr_A Invasion plasmid antige 99.6 9.1E-15 3.1E-19 158.7 17.9 178 209-411 58-238 (571)
109 2xot_A Amphoterin-induced prot 99.6 2E-15 6.8E-20 156.3 11.2 172 213-394 21-202 (361)
110 1z6t_A APAF-1, apoptotic prote 99.6 2.2E-15 7.4E-20 167.1 11.5 164 8-187 276-449 (591)
111 2o6s_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 141.7 11.3 160 198-366 16-181 (208)
112 2xot_A Amphoterin-induced prot 99.6 7.2E-15 2.5E-19 152.1 14.2 163 198-362 27-201 (361)
113 2ca6_A RAN GTPase-activating p 99.6 2.8E-16 9.7E-21 164.6 3.4 86 230-315 30-135 (386)
114 1xeu_A Internalin C; cellular 99.6 9.3E-15 3.2E-19 143.8 14.1 148 207-363 38-185 (263)
115 3goz_A Leucine-rich repeat-con 99.6 3.7E-16 1.3E-20 162.0 4.1 175 215-394 3-209 (362)
116 3goz_A Leucine-rich repeat-con 99.6 1.9E-15 6.4E-20 156.7 8.5 202 207-413 19-263 (362)
117 2v9t_B SLIT homolog 2 protein 99.6 1.5E-14 5.1E-19 138.3 14.1 148 235-394 14-165 (220)
118 3cvr_A Invasion plasmid antige 99.6 2.5E-14 8.4E-19 155.3 16.2 167 200-395 70-244 (571)
119 2v70_A SLIT-2, SLIT homolog 2 99.6 3E-14 1E-18 136.2 14.2 148 235-394 14-166 (220)
120 3e6j_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 136.8 13.1 139 197-336 27-170 (229)
121 2ell_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 129.0 13.0 138 256-398 23-164 (168)
122 1dce_A Protein (RAB geranylger 99.5 1.1E-16 3.9E-21 174.6 -5.9 191 209-409 348-566 (567)
123 2ell_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 130.0 11.0 133 207-343 21-164 (168)
124 2je0_A Acidic leucine-rich nuc 99.5 2.7E-14 9.2E-19 127.5 8.6 12 211-222 18-29 (149)
125 2je0_A Acidic leucine-rich nuc 99.5 7.5E-14 2.6E-18 124.6 9.3 126 230-358 15-148 (149)
126 2wfh_A SLIT homolog 2 protein 99.5 3E-13 1E-17 126.2 12.9 123 236-363 14-139 (193)
127 1w8a_A SLIT protein; signaling 99.4 3.6E-13 1.2E-17 125.7 11.8 104 258-362 30-138 (192)
128 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.8E-18 154.4 11.4 152 209-364 172-330 (727)
129 1a9n_A U2A', U2A'; complex (nu 99.4 9.3E-14 3.2E-18 127.8 7.4 127 230-360 17-150 (176)
130 1w8a_A SLIT protein; signaling 99.4 4.3E-13 1.5E-17 125.2 11.8 123 213-336 11-137 (192)
131 1a9n_A U2A', U2A'; complex (nu 99.4 3.1E-13 1.1E-17 124.3 9.2 126 208-336 17-151 (176)
132 2wfh_A SLIT homolog 2 protein 99.4 1.9E-12 6.6E-17 120.6 13.0 121 213-336 13-137 (193)
133 4b8c_D Glucose-repressible alc 99.4 9.2E-14 3.2E-18 156.6 3.7 130 230-362 222-353 (727)
134 1ds9_A Outer arm dynein; leuci 99.4 8.8E-15 3E-19 137.5 -5.3 132 253-387 44-180 (198)
135 2o6r_A Variable lymphocyte rec 99.4 4.7E-12 1.6E-16 116.5 12.9 106 257-363 28-137 (177)
136 2o6r_A Variable lymphocyte rec 99.4 6.3E-12 2.2E-16 115.6 13.3 122 212-335 9-134 (177)
137 1dce_A Protein (RAB geranylger 99.3 5.5E-12 1.9E-16 137.6 13.0 182 199-388 359-567 (567)
138 1ds9_A Outer arm dynein; leuci 99.3 1.1E-13 3.8E-18 129.9 -4.2 142 211-356 24-180 (198)
139 2r9u_A Variable lymphocyte rec 99.2 3.2E-11 1.1E-15 110.2 11.5 101 260-363 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 109.7 11.6 102 259-363 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 108.4 11.1 103 213-317 15-120 (174)
142 3sb4_A Hypothetical leucine ri 99.2 8.5E-11 2.9E-15 119.8 10.8 79 209-289 48-157 (329)
143 3sb4_A Hypothetical leucine ri 99.2 7.4E-11 2.5E-15 120.2 10.0 122 231-357 24-155 (329)
144 3g39_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 105.4 11.0 101 213-315 12-115 (170)
145 4fdw_A Leucine rich hypothetic 98.9 5.1E-08 1.7E-12 101.4 21.1 122 231-360 112-236 (401)
146 2ifg_A High affinity nerve gro 98.9 4.6E-09 1.6E-13 107.8 10.5 99 262-363 13-116 (347)
147 4fdw_A Leucine rich hypothetic 98.9 4.7E-08 1.6E-12 101.7 17.0 256 210-510 113-379 (401)
148 3un9_A NLR family member X1; l 98.8 3.8E-10 1.3E-14 116.4 0.6 156 207-363 69-252 (372)
149 3un9_A NLR family member X1; l 98.8 3.9E-10 1.3E-14 116.3 -0.1 161 231-395 71-253 (372)
150 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.9E-13 104.1 9.7 86 247-334 23-112 (347)
151 4fs7_A Uncharacterized protein 98.7 9E-07 3.1E-11 92.3 19.4 299 230-566 69-374 (394)
152 4fs7_A Uncharacterized protein 98.6 7.9E-07 2.7E-11 92.7 16.2 298 207-541 68-375 (394)
153 3e4g_A ATP synthase subunit S, 98.5 1.3E-07 4.4E-12 84.6 6.6 90 502-611 62-155 (176)
154 2ra8_A Uncharacterized protein 98.3 3.3E-07 1.1E-11 93.5 4.8 159 230-393 137-319 (362)
155 3e4g_A ATP synthase subunit S, 98.2 9.4E-07 3.2E-11 79.0 3.8 84 257-340 61-154 (176)
156 4gt6_A Cell surface protein; l 98.2 0.00012 4.1E-09 76.0 20.6 120 233-359 65-191 (394)
157 1io0_A Tropomodulin; LRR prote 98.1 1.5E-06 5E-11 79.9 3.2 80 253-332 32-128 (185)
158 2ra8_A Uncharacterized protein 98.0 2.6E-06 8.9E-11 86.9 4.8 149 209-363 138-320 (362)
159 1io0_A Tropomodulin; LRR prote 98.0 4.3E-06 1.5E-10 76.7 4.2 106 230-335 34-161 (185)
160 3rw6_A Nuclear RNA export fact 97.9 1.2E-05 4.2E-10 77.6 6.4 78 254-331 167-257 (267)
161 3rw6_A Nuclear RNA export fact 97.8 2E-06 6.8E-11 83.1 -1.2 79 277-356 167-257 (267)
162 4gt6_A Cell surface protein; l 97.8 0.0005 1.7E-08 71.3 16.4 110 247-360 53-170 (394)
163 4h09_A Hypothetical leucine ri 97.3 0.0068 2.3E-07 62.2 17.9 104 471-602 237-340 (379)
164 4h09_A Hypothetical leucine ri 97.3 0.0077 2.6E-07 61.9 17.2 289 230-566 44-341 (379)
165 3rfe_A Platelet glycoprotein I 95.5 0.022 7.4E-07 48.2 6.2 51 261-313 12-66 (130)
166 3rfe_A Platelet glycoprotein I 95.3 0.022 7.6E-07 48.1 5.5 54 306-362 12-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.7 0.018 6.3E-07 52.2 3.6 80 255-334 39-135 (197)
168 1pgv_A TMD-1, tropomodulin TMD 94.3 0.038 1.3E-06 50.1 4.5 115 276-392 37-168 (197)
169 1w5s_A Origin recognition comp 92.1 0.94 3.2E-05 46.5 11.8 149 10-179 210-387 (412)
170 2qen_A Walker-type ATPase; unk 91.9 0.72 2.5E-05 46.1 10.4 150 8-183 196-348 (350)
171 2fna_A Conserved hypothetical 90.2 0.85 2.9E-05 45.7 9.1 147 8-182 202-355 (357)
172 1hqc_A RUVB; extended AAA-ATPa 70.2 7.8 0.00027 37.9 7.0 55 7-62 160-214 (324)
173 1njg_A DNA polymerase III subu 69.9 6 0.00021 36.5 5.8 54 8-62 178-231 (250)
174 2qby_B CDC6 homolog 3, cell di 46.9 1.1E+02 0.0038 30.2 11.0 135 8-166 190-338 (384)
175 2v1u_A Cell division control p 41.3 1E+02 0.0036 30.3 9.7 136 8-166 194-350 (387)
176 1fnn_A CDC6P, cell division co 29.9 2.4E+02 0.0081 27.7 10.2 139 8-166 186-350 (389)
177 2chg_A Replication factor C sm 27.9 63 0.0022 28.7 5.0 52 9-61 155-206 (226)
178 2vda_B Maltoporin; sugar trans 21.1 44 0.0015 18.1 1.3 19 47-65 7-25 (28)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-33 Score=310.86 Aligned_cols=357 Identities=16% Similarity=0.134 Sum_probs=230.8
Q ss_pred ecccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-
Q 005744 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL- 272 (679)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l- 272 (679)
..+..+..+|...+..+++|++++|.+..+++ .+ .+++|++|++++|.+.+..|.. |.++++|++|++++|.++.+
T Consensus 19 c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 19 CENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp CTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEEC
T ss_pred CCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccC
Confidence 34556677777778899999999999988754 44 8999999999999987554554 58999999999999999876
Q ss_pred CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccccCcccccCC
Q 005744 273 PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (679)
Q Consensus 273 p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l 349 (679)
|..++++++|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhh
Confidence 7789999999999999999988 688999999999999999999763 3355599999999999 67778877768899
Q ss_pred CCCc--EEEccCCcccceeccCCcC---------------------------------------------ChhhhhcCCC
Q 005744 350 TRLE--ELYMGNSFTQWKVEGQSNA---------------------------------------------SLGELKQLSR 382 (679)
Q Consensus 350 ~~L~--~L~l~~~~~~~~~~~~~~~---------------------------------------------~~~~l~~l~~ 382 (679)
++|+ .|++++|.+....++.... .+..+..+ +
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~ 255 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-E
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-c
Confidence 9999 8899888765433221000 00011111 4
Q ss_pred CceEEeecCCCccCCccc--cccccceeEEEeCC---cccCCCCCCCcceEEecCCCcceech-hHHHHhhccccccccc
Q 005744 383 LTTLEVHIPDAQVMPQDL--VFVELERFRICIGD---VWSWSDGYETSKTLKLQLNNSTYLGY-GMKMLLKRTEDLHLDE 456 (679)
Q Consensus 383 L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~l~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~ 456 (679)
|+.|++++|.+..++... .+++|+.|++..+. .+..+..+++|+.|+++++.....+. .+.. +++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCC
Confidence 556666666665555542 55666666665443 22344555666666666665554432 2332 56666666666
Q ss_pred ccCccccccc-ccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCcc
Q 005744 457 LAGFKNVVHE-LDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR 535 (679)
Q Consensus 457 ~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~ 535 (679)
|.....++.. + ..+++|++|++++|.. ..+.........+++|++|++++ +.+..+.... ...+++|+
T Consensus 335 n~~~~~~~~~~~---~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~------~~~l~~L~ 403 (606)
T 3t6q_A 335 NTKRLELGTGCL---ENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEA------FKECPQLE 403 (606)
T ss_dssp CSSCCBCCSSTT---TTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCS-CSCEEECTTT------TTTCTTCS
T ss_pred CCcccccchhhh---hccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCC-CcCCcCCHHH------hcCCccCC
Confidence 6544344332 3 5566666666666642 22221122334566666666665 3333332222 22445555
Q ss_pred EEEEecCCCccccccHHHHHHhhcCcEEEEccc
Q 005744 536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (679)
Q Consensus 536 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (679)
.|++++| +++...+...+..+++|++|++++|
T Consensus 404 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 404 LLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp EEECTTC-CEECCTTCCTTTTCTTCCEEECTTC
T ss_pred eEECCCC-cCCCcccchhhhCcccCCEEECCCC
Confidence 5555553 3333322222344555555555554
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.7e-33 Score=308.95 Aligned_cols=434 Identities=18% Similarity=0.138 Sum_probs=281.7
Q ss_pred ecccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-
Q 005744 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL- 272 (679)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l- 272 (679)
..+..++.+|...+.++++|++++|.+..++. .+ ++++|++|++++|.+.+ +++..|.++++|++|++++|.++.+
T Consensus 18 c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 18 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp CTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred ccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccC
Confidence 44566777787778999999999999988776 34 89999999999999874 4444569999999999999999987
Q ss_pred CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCC--ccchhhhcCCCCCEEcccCCccccccCcccccC
Q 005744 273 PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (679)
Q Consensus 273 p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 348 (679)
|..|+++++|++|++++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++ +.++.+++..++.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQF 175 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhh
Confidence 8889999999999999999988 478999999999999999988 5799999999999999999 5667666555655
Q ss_pred CCCCc----EEEccCCcccceeccCC------------------------------------------------------
Q 005744 349 LTRLE----ELYMGNSFTQWKVEGQS------------------------------------------------------ 370 (679)
Q Consensus 349 l~~L~----~L~l~~~~~~~~~~~~~------------------------------------------------------ 370 (679)
+++|+ +|++++|.+.....+..
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 55444 56666665442211000
Q ss_pred -------------------cCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEE
Q 005744 371 -------------------NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLK 429 (679)
Q Consensus 371 -------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~ 429 (679)
...+..+..+++|+.|+++++.+..++....+++|+.|++..+.... .+ .+++|+.|+
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~ 334 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLT 334 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEE
T ss_pred hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceee
Confidence 00011133344555555555555555421244555555555444211 11 445555555
Q ss_pred ecCCCcceechhHHHHhhcccccccccccCccc--ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceee
Q 005744 430 LQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN--VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLF 507 (679)
Q Consensus 430 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 507 (679)
++++...... .+. .+++|+.|++++|..... .+..+ ..+++|++|++++|. +..++ .....+++|++|+
T Consensus 335 l~~n~~~~~~-~~~-~l~~L~~L~ls~n~l~~~~~~~~~~---~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 335 LTMNKGSISF-KKV-ALPSLSYLDLSRNALSFSGCCSYSD---LGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLD 405 (606)
T ss_dssp EESCSSCEEC-CCC-CCTTCCEEECCSSCEEEEEECCHHH---HCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEE
T ss_pred ccCCcCccch-hhc-cCCCCCEEECcCCccCCCcchhhhh---ccCCcccEeECCCCc-cccch---hhccCCCCCCeeE
Confidence 5554322211 111 245566666665543221 13333 456666666666664 33332 2334566777777
Q ss_pred ccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCC
Q 005744 508 LHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNG 587 (679)
Q Consensus 508 l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~ 587 (679)
++++ .+...... .....+++|+.|++++|. ++...+ ..+..+++|++|++++|.--..++.
T Consensus 406 l~~n-~l~~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------- 466 (606)
T 3vq2_A 406 FQHS-TLKRVTEF-----SAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLS----------- 466 (606)
T ss_dssp CTTS-EEESTTTT-----TTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC-----------
T ss_pred CCCC-ccCCccCh-----hhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCcCCCcchH-----------
Confidence 7663 34333210 113466777777777753 444323 2346677777777777732221111
Q ss_pred ccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCC
Q 005744 588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN 666 (679)
Q Consensus 588 ~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~ 666 (679)
..+..+++|++|++++| +++.++.. .+..++.++.+....+.-....+.....+++|+.|++++|+++.+|..
T Consensus 467 -~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 467 -NVFANTTNLTFLDLSKC-QLEQISWG----VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp -SCCTTCTTCCEEECTTS-CCCEECTT----TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred -HhhccCCCCCEEECCCC-cCCccChh----hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 14568899999999987 45554332 134567788888877754443355556789999999999999999987
No 3
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-32 Score=299.53 Aligned_cols=427 Identities=18% Similarity=0.171 Sum_probs=273.4
Q ss_pred ecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC
Q 005744 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP 273 (679)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 273 (679)
+.+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+|
T Consensus 14 c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred eCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccC
Confidence 344566777776778999999999999887653 3 8999999999999877 455556799999999999999999875
Q ss_pred -ccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccC
Q 005744 274 -SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (679)
Q Consensus 274 -~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 348 (679)
..++++++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++ +.++.+++..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccc
Confidence 789999999999999999988 4 369999999999999999885 789999999999999999 5677777666777
Q ss_pred CCCC----cEEEccCCcccceeccCC------------------------------------------------------
Q 005744 349 LTRL----EELYMGNSFTQWKVEGQS------------------------------------------------------ 370 (679)
Q Consensus 349 l~~L----~~L~l~~~~~~~~~~~~~------------------------------------------------------ 370 (679)
+++| +.|++++|.+....++..
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 7777 788888876543221100
Q ss_pred --------------------cCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCccc-CCCCCCCcceE
Q 005744 371 --------------------NASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWS-WSDGYETSKTL 428 (679)
Q Consensus 371 --------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~l~~L 428 (679)
......+..+++|+.|+++++.+..+|..+ .+ +|+.|++..+.... ....+++++.+
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L 330 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRL 330 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEE
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEE
Confidence 001122334455566666655555555554 33 66666665444321 11234556666
Q ss_pred EecCCCcceechhHHHHhhcccccccccccCcccc--cccccchhhccccceEeeecCCCeeEEEeCCCcccccccccee
Q 005744 429 KLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNV--VHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESL 506 (679)
Q Consensus 429 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 506 (679)
.+.++........ ..+++|+.|++++|...... +..+ ..+++|++|++++|. +..++.. ...+++|++|
T Consensus 331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~---~~~l~~L~~L 401 (570)
T 2z63_A 331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD---FGTTSLKYLDLSFNG-VITMSSN---FLGLEQLEHL 401 (570)
T ss_dssp EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH---HTCSCCCEEECCSCS-EEEEEEE---EETCTTCCEE
T ss_pred eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc---cccCccCEEECCCCc-ccccccc---ccccCCCCEE
Confidence 6665443322211 12566666666666533221 2333 556777777777664 3333221 3466777777
Q ss_pred eccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccch-hhhccccccccCC
Q 005744 507 FLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLK-LIVGKESENSAHK 585 (679)
Q Consensus 507 ~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~-~l~~~~~~~~~~~ 585 (679)
++.+ +.+...... .....+++|+.|++++| .+...++ ..+..+++|++|++++|.-.. .++.
T Consensus 402 ~l~~-n~l~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~--------- 464 (570)
T 2z63_A 402 DFQH-SNLKQMSEF-----SVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD--------- 464 (570)
T ss_dssp ECTT-SEEESCTTS-----CTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS---------
T ss_pred EccC-Cccccccch-----hhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCcCccccchh---------
Confidence 7776 334333210 11346677777777775 3444322 234567777777777774221 2221
Q ss_pred CCccccccccccceeeccCCCCcccc-ccCCCCCcccCCCCCccccCCCCCCCccCccc-cccCCCcceeecccccccc
Q 005744 586 NGSISGVYFRKLHFLKLQHLPQLTSS-GFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVEK 662 (679)
Q Consensus 586 ~~~~~l~~l~~L~~L~l~~cp~L~~l-~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~~ 662 (679)
.+..+++|++|++++| +++.+ +.. +..+++++.+...++. +..++.. ...+++|+.|++++|.++.
T Consensus 465 ----~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 465 ----IFTELRNLTFLDLSQC-QLEQLSPTA-----FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ----CCTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----hhhcccCCCEEECCCC-ccccCChhh-----hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccC
Confidence 3556777777877776 34443 222 2344556666665543 3333332 3456777777777775543
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=6.5e-31 Score=293.79 Aligned_cols=415 Identities=14% Similarity=0.075 Sum_probs=261.6
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~ 290 (679)
-++++.+++.+..+|..+. +++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4578999999999998664 899999999999874 5554569999999999999999987 678999999999999999
Q ss_pred ccCC--cccccCCCCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744 291 LVVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
.+.. |..|+++++|++|++++|.++.+| ..++++++|++|++++| .+.. +|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence 9988 788999999999999999999887 67999999999999994 5554 5665 99999999999999987643
Q ss_pred eccCCcCChhhhhcCCC-CceEEeecCCCccCCccc-cccccceeEEEeCCcc---------------------------
Q 005744 366 VEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVW--------------------------- 416 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--------------------------- 416 (679)
.. ..+..+.+++. +..|++++|.+..++... ...+|+.|++..+...
T Consensus 169 ~~----~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 169 TV----NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CT----TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred Ch----hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 32 34455555544 456666666665555443 2234555555433210
Q ss_pred --------------------------------------------------------cCCCCCCCcceEEecCCCcceech
Q 005744 417 --------------------------------------------------------SWSDGYETSKTLKLQLNNSTYLGY 440 (679)
Q Consensus 417 --------------------------------------------------------~~~~~~~~l~~L~L~~~~~~~~~~ 440 (679)
..+..+++++.|+++++....+|.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~ 324 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT 324 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc
Confidence 012223334444444433333332
Q ss_pred hHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccC
Q 005744 441 GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDG 520 (679)
Q Consensus 441 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 520 (679)
. .+++|+.|++++|...... .+ ..+++|++|++++|. +..+.........+++|++|+++++ .+..++.
T Consensus 325 ~---~l~~L~~L~l~~n~~~~~~--~~---~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~- 393 (606)
T 3vq2_A 325 L---DLPFLKSLTLTMNKGSISF--KK---VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSA- 393 (606)
T ss_dssp C---CCSSCCEEEEESCSSCEEC--CC---CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECC-
T ss_pred C---CCCccceeeccCCcCccch--hh---ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchh-
Confidence 2 1344444444444322222 11 344555555555442 2222111122234555555555552 3443331
Q ss_pred cccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcccccccccccee
Q 005744 521 KVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600 (679)
Q Consensus 521 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L 600 (679)
....+++|+.|++++| ++...++...+..+++|++|++++|.-....+. .+..+++|++|
T Consensus 394 ------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L 453 (606)
T 3vq2_A 394 ------NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-------------IFLGLTSLNTL 453 (606)
T ss_dssp ------CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-------------TTTTCTTCCEE
T ss_pred ------hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchh-------------hhcCCCCCCEE
Confidence 1335566666666664 344443323345566666666666642222211 34567788888
Q ss_pred eccCCCCccc--cccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCcccc
Q 005744 601 KLQHLPQLTS--SGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAI 671 (679)
Q Consensus 601 ~l~~cp~L~~--l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~ 671 (679)
++++|. +.. ++.. +..++.++.+...++.-....+.....+++|+.|++++|+++.+.+..+...
T Consensus 454 ~l~~n~-l~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 454 KMAGNS-FKDNTLSNV-----FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp ECTTCE-EGGGEECSC-----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred ECCCCc-CCCcchHHh-----hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 887763 332 2222 2455667777777765443333445567889999999998888866665543
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=7.2e-31 Score=303.32 Aligned_cols=361 Identities=18% Similarity=0.196 Sum_probs=221.3
Q ss_pred EecccchhhhhhhhcCCCeEEEccCCCcccCC-ccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL 272 (679)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 272 (679)
-+....++.+|. .+.++++|++++|.+..++ ..+ .+++|++|++++|...+.+++..|.++++|++|++++|.++.+
T Consensus 10 dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 10 FYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp EESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred EccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 345566777787 7899999999999997764 444 8999999999999877788666679999999999999999976
Q ss_pred -CccccCCcCCCEEEcCCcccCC--ccc--ccCCCCCcEEEecCCCCCccc--hhhhcCCCCCEEcccCCccccccCccc
Q 005744 273 -PSSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNV 345 (679)
Q Consensus 273 -p~~i~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~ 345 (679)
|..++++++|++|++++|.+.. +.. ++++++|++|++++|.++.++ ..++++++|++|++++ +.++.+.+..
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~ 167 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHE 167 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHH
Confidence 8899999999999999999986 544 999999999999999998663 5799999999999999 5566555444
Q ss_pred ccCC--CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc-CCccc----------------------
Q 005744 346 ISNL--TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQDL---------------------- 400 (679)
Q Consensus 346 l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~---------------------- 400 (679)
++.+ ++|+.|++++|.+....+.........+.+. .|+.|++++|.+.. .+..+
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccC-ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 6666 6777777777765432211000000011111 35555555543211 00000
Q ss_pred -----------------cccccceeEEEeCCc----ccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccC
Q 005744 401 -----------------VFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459 (679)
Q Consensus 401 -----------------~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 459 (679)
..++|+.|++..+.. ...+..+++|+.|+|+++.....+......+++|+.|++++|..
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 113455555543332 12344555666666666555544332222355666666666554
Q ss_pred cccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCccc-----------CCCCc
Q 005744 460 FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR-----------LNEDD 528 (679)
Q Consensus 460 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-----------~~~~~ 528 (679)
....+..+ ..+++|++|++++|. +..++. ..+..+++|++|++++ +.++.++. ++ ...-.
T Consensus 327 ~~~~~~~~---~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~Ls~-N~l~~i~~--~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 327 GELYSSNF---YGLPKVAYIDLQKNH-IAIIQD--QTFKFLEKLQTLDLRD-NALTTIHF--IPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp SCCCSCSC---SSCTTCCEEECCSCC-CCCCCS--SCSCSCCCCCEEEEET-CCSCCCSS--CCSCSEEEEESCCCCCCC
T ss_pred CccCHHHh---cCCCCCCEEECCCCC-CCccCh--hhhcCCCCCCEEECCC-CCCCcccC--CCCcchhccCCCCccccc
Confidence 33334444 456666666666553 222211 1223455566666655 33332210 00 00000
Q ss_pred cccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccc
Q 005744 529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (679)
Q Consensus 529 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (679)
....+++.|++++ ++++.++....+..+++|++|++++|
T Consensus 398 ~~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 398 KINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp CCCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred ccccccceeeccc-CccccCchhhhhhcCCccceeeCCCC
Confidence 1123344444444 24444433334456777777777776
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=3e-31 Score=303.33 Aligned_cols=429 Identities=17% Similarity=0.121 Sum_probs=209.4
Q ss_pred CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cCCccccCCcCCCEEEcC
Q 005744 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSLE 288 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~ 288 (679)
+++++|++++|.+........+++|++|++++|.+.+.+|. ++++++|++|++++|.++ .+|..++++++|++|+++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 34444444444443322223444555555555554443433 344555555555555544 234445555555555555
Q ss_pred CcccCC-cccccCCCCCcEEEecCCCCC-ccchhhhcC-CCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744 289 NCLVVD-VAIIGDLKKLEILSLKHSSIE-QLPREIGQL-TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
+|.+.. .+.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+.+.
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc
Confidence 554443 1111 4444444444444444 444444433 45555555542222222222 44555555555555443211
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCc-cCCccc-c---------------------------ccccceeEEEeCC--
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-V---------------------------FVELERFRICIGD-- 414 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~---------------------------~~~L~~L~l~~~~-- 414 (679)
.+ ...+.++++|+.|++++|.+. .+|..+ . +++|+.|++..+.
T Consensus 334 ip------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 334 LP------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp CC------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CC------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 11 112444455555555544443 333333 2 3444444443332
Q ss_pred --cccCCCCCCCcceEEecCCCcc-eechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEE
Q 005744 415 --VWSWSDGYETSKTLKLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHIL 491 (679)
Q Consensus 415 --~~~~~~~~~~l~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 491 (679)
.+..+..+++|+.|+++++... ..|..+.. +++|+.|++++|.....+|..+ ..+++|++|++++|.....++
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQEL---MYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCCSCCC
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHH---cCCCCceEEEecCCcccCcCC
Confidence 1223344555555555554433 23333333 4555555555555444455544 455666666666654222211
Q ss_pred eCCCccccccccceeecccccccc-ccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccccc
Q 005744 492 NSDGRVGTFPLLESLFLHNLINLE-KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (679)
Q Consensus 492 ~~~~~~~~~~~L~~L~l~~c~~L~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (679)
.....+++|++|+++++ .+. .++. ..+.+++|+.|++++|. +....|. .+..+++|+.|++++|+-
T Consensus 484 ---~~l~~l~~L~~L~L~~N-~l~~~~p~-------~~~~l~~L~~L~L~~N~-l~~~~p~-~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 484 ---SGLSNCTNLNWISLSNN-RLTGEIPK-------WIGRLENLAILKLSNNS-FSGNIPA-ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ---GGGGGCTTCCEEECCSS-CCCSCCCG-------GGGGCTTCCEEECCSSC-CEEECCG-GGGGCTTCCEEECCSSEE
T ss_pred ---HHHhcCCCCCEEEccCC-ccCCcCCh-------HHhcCCCCCEEECCCCc-ccCcCCH-HHcCCCCCCEEECCCCcc
Confidence 22345666666666663 333 2221 14466777777777753 4322232 356677777777777754
Q ss_pred chhhhcccccccc---------------------------------------------------------CCCCcccccc
Q 005744 571 LKLIVGKESENSA---------------------------------------------------------HKNGSISGVY 593 (679)
Q Consensus 571 L~~l~~~~~~~~~---------------------------------------------------------~~~~~~~l~~ 593 (679)
...+|..-..... .......+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 4344432110000 0000112345
Q ss_pred ccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCccc
Q 005744 594 FRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSA 670 (679)
Q Consensus 594 l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~ 670 (679)
+++|+.|+++++.--..+|.. +..+..++.+....+.-...+|.....+++|+.|++++|+++...+..+..
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~-----l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKE-----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGG-----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cccccEEECcCCcccccCCHH-----HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 677778888775322234433 345666777777766655567777778888999999999888555554443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1.8e-31 Score=305.19 Aligned_cols=421 Identities=17% Similarity=0.066 Sum_probs=220.3
Q ss_pred hcCCCeEEEccCCCcc-cCCc--cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-Ccc---ccCC
Q 005744 208 IDEAPTAISIPFRGIY-ELPE--RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSS---LGCL 279 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~---i~~l 279 (679)
...++++|++++|.+. .+|. .+ .+++|++|++++|.+.+.+|..++.++++|++|++++|.++.. |.. +.++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 3456666666666663 3444 33 5666666666666666555555445666666666666666543 222 4556
Q ss_pred cCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (679)
Q Consensus 280 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (679)
++|++|++++|.+.....++.+++|++|++++|.++..++.++++++|++|++++| .+....+..++++++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCC
Confidence 66666666666555533335566666666666655543333566666666666653 23322222255666666666666
Q ss_pred CcccceeccCCcCChhhhhcCCCCceEEeecCCCc-cCCccc-c-ccccceeEEEeCC----cccCCC------------
Q 005744 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-V-FVELERFRICIGD----VWSWSD------------ 420 (679)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~L~l~~~~----~~~~~~------------ 420 (679)
|.+....+ .. .+++|++|++++|.+. .+|..+ . +++|+.|++..+. .+..+.
T Consensus 257 n~l~~~~~--------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 257 NQFVGPIP--------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEESCC--------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CcccCccC--------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 54432111 00 3444445555444443 333333 1 2444444443332 122233
Q ss_pred -------------CCCCcceEEecCCCcc-eechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCC
Q 005744 421 -------------GYETSKTLKLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPE 486 (679)
Q Consensus 421 -------------~~~~l~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 486 (679)
.+++|+.|+++.+... ..|.++....++|+.|++++|.....+|..+.. ..+++|++|++++|..
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGF 406 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCcc
Confidence 3444444444444333 334444332124555555544443333333311 1144555555555532
Q ss_pred eeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEc
Q 005744 487 ILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT 566 (679)
Q Consensus 487 l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~ 566 (679)
...+ ......+++|++|+++++ .+..... ...+.+++|+.|++++|. +....+. .+..+++|++|+++
T Consensus 407 ~~~~---p~~l~~l~~L~~L~Ls~N-~l~~~~p------~~l~~l~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 407 TGKI---PPTLSNCSELVSLHLSFN-YLSGTIP------SSLGSLSKLRDLKLWLNM-LEGEIPQ-ELMYVKTLETLILD 474 (768)
T ss_dssp EEEC---CGGGGGCTTCCEEECCSS-EEESCCC------GGGGGCTTCCEEECCSSC-CCSCCCG-GGGGCTTCCEEECC
T ss_pred cccc---CHHHhcCCCCCEEECcCC-cccCccc------HHHhcCCCCCEEECCCCc-ccCcCCH-HHcCCCCceEEEec
Confidence 2111 122345556666666653 3332111 113456666666666643 3322222 24556666666666
Q ss_pred ccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCcccccc
Q 005744 567 DCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVV 646 (679)
Q Consensus 567 ~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~ 646 (679)
+|.-...++. .+..+++|++|++++|.-...+|.. +..++.++.+....+.-...+|.....
T Consensus 475 ~N~l~~~~p~-------------~l~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 475 FNDLTGEIPS-------------GLSNCTNLNWISLSNNRLTGEIPKW-----IGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp SSCCCSCCCG-------------GGGGCTTCCEEECCSSCCCSCCCGG-----GGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred CCcccCcCCH-------------HHhcCCCCCEEEccCCccCCcCChH-----HhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 6632222221 4567888888888887533344443 345667788888777666667777778
Q ss_pred CCCcceeeccccccc-cccCCCcc
Q 005744 647 FPSLKKLKLSSINVE-KIWLNSFS 669 (679)
Q Consensus 647 ~p~L~~L~l~~~~l~-~l~~~~~~ 669 (679)
+++|+.|++++|++. .+|...+.
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCCCCEEECCCCccCCcCChHHhc
Confidence 899999999999776 67765543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=9.7e-31 Score=292.38 Aligned_cols=436 Identities=15% Similarity=0.084 Sum_probs=297.3
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~ 290 (679)
-++++.++..+..+|..+ .+++++|++++|.+.+..|. .|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 457888888888898766 34799999999999854444 469999999999999999876 788999999999999999
Q ss_pred ccCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 291 LVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
.+.. |..++++++|++|++++|.++.+ |..++++++|++|++++ +.+..++...+..+++|++|++++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 168 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYL-- 168 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEE--
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCccccc--
Confidence 9987 78899999999999999999987 56799999999999999 567776433356699999999999987532
Q ss_pred cCCcCChhhhhcCCCCc--eEEeecCCCccCCccc-ccc-----------------------------------------
Q 005744 368 GQSNASLGELKQLSRLT--TLEVHIPDAQVMPQDL-VFV----------------------------------------- 403 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~-~~~----------------------------------------- 403 (679)
....+..+++|+ .|++++|.+..++... ...
T Consensus 169 -----~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 169 -----SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp -----CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred -----ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 235677888888 7888888776655432 222
Q ss_pred -----------ccceeEEEeCCcc----cCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccccccc
Q 005744 404 -----------ELERFRICIGDVW----SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD 468 (679)
Q Consensus 404 -----------~L~~L~l~~~~~~----~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (679)
+|+.+++..+... ..+..+++|+.|+++++....+|.++.. +++|++|++++|......+..+
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~- 321 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISA- 321 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS-CTTCCEEECTTCCCSBGGGGCG-
T ss_pred ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc-cccCCEEECccCCcCcCchhhh-
Confidence 3344444333221 2356678888888888887777777665 6888889988887655556566
Q ss_pred chhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccc
Q 005744 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHL 548 (679)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 548 (679)
..+++|++|++++|.....++. .....+++|++|++++ +.+..+.... .....+++|++|++++| ++..+
T Consensus 322 --~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~-n~l~~~~~~~----~~~~~l~~L~~L~l~~n-~l~~~ 391 (606)
T 3t6q_A 322 --SNFPSLTHLSIKGNTKRLELGT--GCLENLENLRELDLSH-DDIETSDCCN----LQLRNLSHLQSLNLSYN-EPLSL 391 (606)
T ss_dssp --GGCTTCSEEECCSCSSCCBCCS--STTTTCTTCCEEECCS-SCCCEEEEST----TTTTTCTTCCEEECCSC-SCEEE
T ss_pred --hccCcCCEEECCCCCcccccch--hhhhccCcCCEEECCC-CccccccCcc----hhcccCCCCCEEECCCC-cCCcC
Confidence 7788999999988864333321 2246788999999988 4555543111 12567899999999985 56666
Q ss_pred ccHHHHHHhhcCcEEEEcccccchhhhccccc------------cccCCCCccccccccccceeeccCCCCccccccCCC
Q 005744 549 FPFSLVKNLLQLQKVKVTDCTNLKLIVGKESE------------NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLE 616 (679)
Q Consensus 549 ~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~------------~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~ 616 (679)
++ ..+..+++|++|++++|.--...+...-. ..........+..+++|++|++++|+ +...... .
T Consensus 392 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~ 468 (606)
T 3t6q_A 392 KT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQ-K 468 (606)
T ss_dssp CT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEEC-S
T ss_pred CH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccc-c
Confidence 44 34677899999999988432222211000 00000001123445555555555542 2210000 0
Q ss_pred CCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCccccc
Q 005744 617 TPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (679)
Q Consensus 617 ~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~~ 672 (679)
...+..+++++.+....|.-....+.....+++|+.|++++|+++.++++.+....
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 01134455566666666543332233445677788888888877777766665443
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=1.2e-30 Score=295.78 Aligned_cols=452 Identities=15% Similarity=0.118 Sum_probs=261.4
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 274 (679)
.+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+.+..| ..|+++++|++|++++|.++.+|.
T Consensus 12 s~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 12 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccCh
Confidence 34556667766678899999999999888764 3 88999999999998875444 445889999999999999998876
Q ss_pred -cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCccccc--C
Q 005744 275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS--N 348 (679)
Q Consensus 275 -~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~--~ 348 (679)
.|+++++|++|++++|.+.. +..++++++|++|++++|.++.. |..++++++|++|++++ +.++.+++..++ .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccc
Confidence 58999999999999999887 46799999999999999988865 45578899999999998 566777665443 4
Q ss_pred CCCCcEEEccCCcccceeccCCcCChhhhh------------------------cCCCCceEEeecCCCccCCcc-c-cc
Q 005744 349 LTRLEELYMGNSFTQWKVEGQSNASLGELK------------------------QLSRLTTLEVHIPDAQVMPQD-L-VF 402 (679)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~-~-~~ 402 (679)
+++|++|++++|.+....++ .+..+. ..++|+.|++++|.+...+.. + .+
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp TCEESEEECTTCCCCCBCTT----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred cccccEEECCCCcccccChh----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 57889999988866533221 111111 124555666665555443322 2 22
Q ss_pred --cccceeEEEeCCc----ccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccc---------------------
Q 005744 403 --VELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLD--------------------- 455 (679)
Q Consensus 403 --~~L~~L~l~~~~~----~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~--------------------- 455 (679)
++|+.|++..+.. ...+..+++|+.|+++++.....+......+++|+.|++.
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 2366666644432 1234455566666666554444322211124455555554
Q ss_pred ------------cccCcccccccccchhhccccceEeeecCCC-eeEEEeCCCccccccccceeeccccccccccccCcc
Q 005744 456 ------------ELAGFKNVVHELDDEEGFARLRHLHVHNGPE-ILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKV 522 (679)
Q Consensus 456 ------------~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 522 (679)
+|......+..+ ..+++|++|++++|.. ...+..........++|+.|++++ +++..+...
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~-n~l~~~~~~-- 399 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMF---TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIESD-- 399 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTT---TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT-SCCCEECTT--
T ss_pred ccCCCCCEEECCCCccCCCChhHh---ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC-CCCCeEChh--
Confidence 433322222223 3444444444444321 111111000000113444444444 233333221
Q ss_pred cCCCCccccCCccEEEEecCCCcc-ccccHHHHHHhhcCcEEEEcccccchhhhccc--------------cccccCCCC
Q 005744 523 RLNEDDKSFSNLRIIKVEGCHRVK-HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKE--------------SENSAHKNG 587 (679)
Q Consensus 523 ~~~~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~--------------~~~~~~~~~ 587 (679)
....+++|+.|+++++ .+. .++ ...+..+++|++|++++|. +..+.... .........
T Consensus 400 ----~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 400 ----AFSWLGHLEVLDLGLN-EIGQELT-GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp ----TTTTCTTCCEEECCSS-CCEEECC-SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred ----hhhCCCCCCEEeCCCC-cCccccC-cccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccC
Confidence 1345677777777764 333 232 2334566777777777663 22221110 000000011
Q ss_pred ccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCcc---------ccccCCCcceeecccc
Q 005744 588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFN---------ERVVFPSLKKLKLSSI 658 (679)
Q Consensus 588 ~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~---------~~~~~p~L~~L~l~~~ 658 (679)
...+..+++|+.|+++++ +++.++... +..+..++.+....+. +..++. ....+++|+.|++++|
T Consensus 473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNN-NIANINDDM----LEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp SCTTTTCTTCCEEECCSS-CCCCCCTTT----TTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred CcccccCCCCCEEECCCC-CCCcCChhh----hccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 123556677777777764 455544331 2344555555555432 222211 1345688899999988
Q ss_pred ccccccCCCcccccc
Q 005744 659 NVEKIWLNSFSAIES 673 (679)
Q Consensus 659 ~l~~l~~~~~~~~~~ 673 (679)
+++.||.+.|....+
T Consensus 547 ~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCCCCCTTTTTTCTT
T ss_pred CCCCCCHHHcccccC
Confidence 888888877765444
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1e-31 Score=304.82 Aligned_cols=390 Identities=16% Similarity=0.157 Sum_probs=271.9
Q ss_pred CCCeEEEccCCCc-ccCCccc-CCcceeeeee-ccCCcccC---------------------------------------
Q 005744 210 EAPTAISIPFRGI-YELPERL-GFLKLKLFLF-FTENLSLQ--------------------------------------- 247 (679)
Q Consensus 210 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~~~~--------------------------------------- 247 (679)
.++..|+|+++.+ ..+|+.+ .+++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 5788999999988 4677777 8999999999 55533222
Q ss_pred -------------------------------------CCchhhcCCCCccEEEeCCCcCCc------------------C
Q 005744 248 -------------------------------------IPDPFFEGMTELRVLDLTGFRFHS------------------L 272 (679)
Q Consensus 248 -------------------------------------~~~~~~~~l~~L~~L~l~~~~l~~------------------l 272 (679)
+|.. ++++++|++|++++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 6665 4889999999999999988 9
Q ss_pred Ccccc--CCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCC-CCc--cchhhhcCC-------CCCEEcccCCccc
Q 005744 273 PSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS-IEQ--LPREIGQLT-------CLKLLDLSNCSKL 338 (679)
Q Consensus 273 p~~i~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l 338 (679)
|..++ ++++|++|++++|.+.. |..++++++|++|++++|+ ++. +|..+++++ +|++|++++ +.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcC
Confidence 99988 99999999999998766 8889999999999999997 884 898888776 999999999 567
Q ss_pred cccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccc-cceeEEEeCCc
Q 005744 339 KEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDV 415 (679)
Q Consensus 339 ~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~ 415 (679)
..+|. ..++++++|++|++++|.+. . . ..+..+++|+.|++++|.+..+|..+ .+++ |+.|++..+..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~-------l-p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-H-------L-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-B-------C-CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-c-------c-hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 78887 23899999999999999774 1 1 26778899999999999988888777 6777 88888876653
Q ss_pred c---cCCCCCC--CcceEEecCCCcceech----hHHH-HhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744 416 W---SWSDGYE--TSKTLKLQLNNSTYLGY----GMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 416 ~---~~~~~~~--~l~~L~L~~~~~~~~~~----~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
. ..+.... +|+.|+++++.....++ .+.. .+++|+.|++++|... .+|..+. ..+++|++|++++|.
T Consensus 632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~--~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELF--ATGSPISTIILSNNL 708 (876)
T ss_dssp CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHH--HTTCCCSEEECCSCC
T ss_pred CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHH--ccCCCCCEEECCCCc
Confidence 3 2333332 37777777765533211 1111 1236777888777644 4554431 356778888887774
Q ss_pred CeeEEEeCCCc-----cccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcC
Q 005744 486 EILHILNSDGR-----VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQL 560 (679)
Q Consensus 486 ~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 560 (679)
+..++..... ...+++|+.|++++ ++++.++.... ...+++|+.|++++| +++.+|. .+..+++|
T Consensus 709 -L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp~~l~-----~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L 778 (876)
T 4ecn_A 709 -MTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDDFR-----ATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQL 778 (876)
T ss_dssp -CSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCCGGGS-----TTTCTTCCEEECCSS-CCSSCCC--GGGGCTTC
T ss_pred -CCccChHHhccccccccccCCccEEECCC-CCCccchHHhh-----hccCCCcCEEEeCCC-CCCccch--hhhcCCCC
Confidence 3333321111 11234778888877 46665543211 126777888888774 5666643 24577788
Q ss_pred cEEEEccccc------chhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCC
Q 005744 561 QKVKVTDCTN------LKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDP 634 (679)
Q Consensus 561 ~~L~i~~c~~------L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~ 634 (679)
+.|++++|+. ...++ ..+..+++|+.|+|++|+ +..+|..+
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip-------------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l------------------- 825 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWP-------------TGITTCPSLIQLQIGSND-IRKVDEKL------------------- 825 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCC-------------TTGGGCSSCCEEECCSSC-CCBCCSCC-------------------
T ss_pred CEEECCCCCCcccccccccCh-------------HHHhcCCCCCEEECCCCC-CCccCHhh-------------------
Confidence 8888876441 11221 145577778888887763 45544421
Q ss_pred CCCccCccccccCCCcceeeccccccccccCCCc
Q 005744 635 KDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSF 668 (679)
Q Consensus 635 ~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~ 668 (679)
+++|+.|+|++|++..+....+
T Consensus 826 ------------~~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 826 ------------TPQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp ------------CSSSCEEECCSCTTCEEECGGG
T ss_pred ------------cCCCCEEECCCCCCCccChHHc
Confidence 2688888888888888776655
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.3e-31 Score=299.21 Aligned_cols=353 Identities=14% Similarity=0.135 Sum_probs=236.7
Q ss_pred CCchhhcCCCCccEEEeCCCcCCc------------------CCcccc--CCcCCCEEEcCCcccCC--cccccCCCCCc
Q 005744 248 IPDPFFEGMTELRVLDLTGFRFHS------------------LPSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (679)
Q Consensus 248 ~~~~~~~~l~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (679)
+|.. ++++++|++|++++|.++. +|..++ ++++|++|++++|.+.. |..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 6665 4889999999999999988 999999 99999999999998776 88999999999
Q ss_pred EEEecCCC-CC--ccchhhhcC------CCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChh
Q 005744 306 ILSLKHSS-IE--QLPREIGQL------TCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (679)
Q Consensus 306 ~L~l~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (679)
+|++++|+ ++ .+|..++++ ++|++|++++ +.++.+|. +.++++++|++|++++|.+.+.. .
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-------p- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-------P- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-------C-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccch-------h-
Confidence 99999997 88 489988887 9999999999 56678887 23899999999999999775322 1
Q ss_pred hhhcCCCCceEEeecCCCccCCccc-cccc-cceeEEEeCCcc---cCCCCC--CCcceEEecCCCcce-echhHHH---
Q 005744 376 ELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDVW---SWSDGY--ETSKTLKLQLNNSTY-LGYGMKM--- 444 (679)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~---~~~~~~--~~l~~L~L~~~~~~~-~~~~~~~--- 444 (679)
.+..+++|+.|++++|.+..+|..+ .+++ |+.|++..+... ..+... ++|+.|+++++.... .|.++..
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 5677889999999999888888777 6777 888888665532 222222 267777777655433 2222220
Q ss_pred ---HhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCc-----cccccccceeeccccccccc
Q 005744 445 ---LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR-----VGTFPLLESLFLHNLINLEK 516 (679)
Q Consensus 445 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~L~~ 516 (679)
.+++|+.|++++|... .+|..+. ..+++|++|++++|.. ..++..... ...+++|++|++++ ++++.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQIS-KFPKELF--STGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRF-NKLTK 502 (636)
T ss_dssp SCCCCCCEEEEECCSSCCC-SCCTHHH--HTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCS-SCCCB
T ss_pred ccccCCCCCEEECcCCccC-cCCHHHH--ccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcC-CcCCc
Confidence 1346777777776543 4444321 3467777777777642 233221110 01123777777777 45555
Q ss_pred cccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEccccc------chhhhccccccccCCCCccc
Q 005744 517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN------LKLIVGKESENSAHKNGSIS 590 (679)
Q Consensus 517 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~------L~~l~~~~~~~~~~~~~~~~ 590 (679)
++.... ...+++|+.|+++++ +++.+|. .+..+++|++|++++|.. ...++. .
T Consensus 503 lp~~~~-----~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-------------~ 561 (636)
T 4eco_A 503 LSDDFR-----ATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPE-------------G 561 (636)
T ss_dssp CCGGGS-----TTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCT-------------T
T ss_pred cChhhh-----hccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccChH-------------H
Confidence 543211 125677777777774 5555533 234677777777755431 122221 3
Q ss_pred cccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCc
Q 005744 591 GVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSF 668 (679)
Q Consensus 591 l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~ 668 (679)
+..+++|++|+|++|. +..+|.. .+++|+.|++++|.+..+....+
T Consensus 562 l~~l~~L~~L~Ls~N~-l~~ip~~-------------------------------~~~~L~~L~Ls~N~l~~~~~~~~ 607 (636)
T 4eco_A 562 ITLCPSLTQLQIGSND-IRKVNEK-------------------------------ITPNISVLDIKDNPNISIDLSYV 607 (636)
T ss_dssp GGGCSSCCEEECCSSC-CCBCCSC-------------------------------CCTTCCEEECCSCTTCEEECTTT
T ss_pred HhcCCCCCEEECCCCc-CCccCHh-------------------------------HhCcCCEEECcCCCCccccHHhc
Confidence 4567777777777653 3444432 12788888888888887776554
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.2e-31 Score=291.71 Aligned_cols=415 Identities=15% Similarity=0.161 Sum_probs=252.7
Q ss_pred ccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc
Q 005744 198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275 (679)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 275 (679)
+..++.+|....+++++|++++|.+..++. .+ .+++|++|++++|.+.+ ++...|.++++|++|++++|.++.+|..
T Consensus 14 ~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 14 SRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHH
Confidence 345667777666899999999999977753 44 89999999999999875 4444458999999999999999988765
Q ss_pred -ccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCC-CCccc-hhhhcCCCCCEEcccCCccccccCcccccCC
Q 005744 276 -LGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSS-IEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (679)
Q Consensus 276 -i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l 349 (679)
++++++|++|++++|.+.. +..++++++|++|++++|. +..+| ..++++++|++|++++| .++...+..++++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhcc
Confidence 9999999999999999874 5789999999999999997 77777 47899999999999984 5555444458999
Q ss_pred CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCC---ccc--cccccceeEEEe------------
Q 005744 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP---QDL--VFVELERFRICI------------ 412 (679)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~------------ 412 (679)
++|++|+++++...... ...+..+++|+.|++++|.+...+ ..+ ..++|+.|++..
T Consensus 172 ~~L~~L~l~~n~~~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLL-------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp SEEEEEEEECSBSTTHH-------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred ccCceEecccCcccccc-------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 99999999888653111 112356889999999998877642 111 234444444432
Q ss_pred ----------------CCccc----------CCCCCC-----------------------------CcceEEecCCCcce
Q 005744 413 ----------------GDVWS----------WSDGYE-----------------------------TSKTLKLQLNNSTY 437 (679)
Q Consensus 413 ----------------~~~~~----------~~~~~~-----------------------------~l~~L~L~~~~~~~ 437 (679)
+.... .+.... .++.+.++++....
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 324 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc
Confidence 21100 112223 34444444444444
Q ss_pred echhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccccc
Q 005744 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV 517 (679)
Q Consensus 438 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 517 (679)
+|.++...+++|+.|++++|......|......+.+++|++|++++|. ++.++........+++|++|++++ ++++.+
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l 402 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISR-NTFHPM 402 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTT-CCCCCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCC-CCCccC
Confidence 454443334555555555555433332111001445555555555553 111110001123455555555555 244443
Q ss_pred ccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcccccccccc
Q 005744 518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL 597 (679)
Q Consensus 518 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L 597 (679)
+.. ...+++|+.|++++| +++.++.. ..++|++|++++| .++.++ ..+++|
T Consensus 403 p~~-------~~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N-~l~~~~----------------~~l~~L 453 (549)
T 2z81_A 403 PDS-------CQWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNN-NLDSFS----------------LFLPRL 453 (549)
T ss_dssp CSC-------CCCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSS-CCSCCC----------------CCCTTC
T ss_pred Chh-------hcccccccEEECCCC-Ccccccch----hcCCceEEECCCC-Chhhhc----------------ccCChh
Confidence 321 234455555555553 34444221 1245555655555 333321 256777
Q ss_pred ceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccc-cccCCCcceeecccccc
Q 005744 598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINV 660 (679)
Q Consensus 598 ~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l 660 (679)
++|+++++ +++.+|.. ..++.++.+....+ .+..++.. ...+++|+.|++++|.+
T Consensus 454 ~~L~Ls~N-~l~~ip~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 454 QELYISRN-KLKTLPDA------SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CEEECCSS-CCSSCCCG------GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cEEECCCC-ccCcCCCc------ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 77777765 45555432 23344555555543 23333332 34567777777776654
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.3e-29 Score=287.25 Aligned_cols=434 Identities=17% Similarity=0.121 Sum_probs=232.8
Q ss_pred hhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCC
Q 005744 207 KIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLR 283 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~ 283 (679)
...+++++|++++|.+..++.. + .+++|++|++++|.+. .+|...|+++++|++|++++|.++.+| ..++++++|+
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4467788888888887666443 3 7788888888888766 566655678888888888888887775 5678888888
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-h--hcCCCCCEEcccCCccccccCcccccCCC--------
Q 005744 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-I--GQLTCLKLLDLSNCSKLKEIRPNVISNLT-------- 350 (679)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~l~~lp~~~l~~l~-------- 350 (679)
+|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++| .++.+++..++.+.
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhcc
Confidence 88888887776 56677888888888888877766543 2 24567777777773 45554443333322
Q ss_pred -------------------C--------------------------CcEEEccCCcccceeccCCcCChhhhhcCCCCce
Q 005744 351 -------------------R--------------------------LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTT 385 (679)
Q Consensus 351 -------------------~--------------------------L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 385 (679)
+ |++|++++|.+... ....+..+++|+.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV-------GNDSFAWLPQLEY 276 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-------CTTTTTTCTTCCE
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc-------CcccccCcccccE
Confidence 2 44444443333211 1234555666777
Q ss_pred EEeecCCCccCCcc-c-cccccceeEEEeCC---------ccc----CCCCCCCcceEEecCCCcceechhHHHHhhccc
Q 005744 386 LEVHIPDAQVMPQD-L-VFVELERFRICIGD---------VWS----WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTE 450 (679)
Q Consensus 386 L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~---------~~~----~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~ 450 (679)
|++++|.+...+.. + .+++|+.|++..+. .+. .+..+++|+.|+++++.....+......+++|+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356 (680)
T ss_dssp EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCc
Confidence 77766665544322 2 44555555543210 000 233445555555555444333322222234444
Q ss_pred ccccc----------------------------cccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccc
Q 005744 451 DLHLD----------------------------ELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPL 502 (679)
Q Consensus 451 ~L~l~----------------------------~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 502 (679)
.|+++ +|......+..+ ..+++|++|++++|.....++. .....+++
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~ 431 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF---SWLGHLEVLDLGLNEIGQELTG--QEWRGLEN 431 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCEEECCS--GGGTTCTT
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh---hCCCCCCEEeCCCCcCccccCc--ccccCccc
Confidence 44444 443333333344 5667777777777653332221 22345666
Q ss_pred cceeeccccccccccccCccc--------------------CCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcE
Q 005744 503 LESLFLHNLINLEKVCDGKVR--------------------LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQK 562 (679)
Q Consensus 503 L~~L~l~~c~~L~~~~~~~~~--------------------~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 562 (679)
|++|+++++ ++..+....+. .+.....+++|+.|++++| +++.+++ ..+..+++|++
T Consensus 432 L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~ 508 (680)
T 1ziw_A 432 IFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEI 508 (680)
T ss_dssp CCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred ccEEecCCC-CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCE
Confidence 666666663 33333222111 0111334455555555552 4444432 22345555555
Q ss_pred EEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCcc
Q 005744 563 VKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFN 642 (679)
Q Consensus 563 L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~ 642 (679)
|++++| .+..++.... .......+..+++|++|+++++ +++.++... +..++.++.+.... ..+..++.
T Consensus 509 L~Ls~N-~l~~~~~~~~----~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~----~~~l~~L~~L~Ls~-N~l~~l~~ 577 (680)
T 1ziw_A 509 LDLQHN-NLARLWKHAN----PGGPIYFLKGLSHLHILNLESN-GFDEIPVEV----FKDLFELKIIDLGL-NNLNTLPA 577 (680)
T ss_dssp EECCSS-CCGGGGSTTS----TTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT----TTTCTTCCEEECCS-SCCCCCCT
T ss_pred EeCCCC-Cccccchhhc----cCCcchhhcCCCCCCEEECCCC-CCCCCCHHH----cccccCcceeECCC-CCCCcCCH
Confidence 555554 3333321100 0000012445666666666664 455544321 23344455555433 23444444
Q ss_pred cc-ccCCCcceeeccccccccccCCCc
Q 005744 643 ER-VVFPSLKKLKLSSINVEKIWLNSF 668 (679)
Q Consensus 643 ~~-~~~p~L~~L~l~~~~l~~l~~~~~ 668 (679)
.. ..+++|+.|++++|+++.++...+
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHh
Confidence 32 345777777777777777666543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=281.57 Aligned_cols=421 Identities=16% Similarity=0.101 Sum_probs=259.6
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~ 290 (679)
.+.++-++..+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 455777777788888754 3679999999999874 4444569999999999999999987 467999999999999999
Q ss_pred ccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744 291 LVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
.+.. +..|+++++|++|++++|.++.+|. .++++++|++|++++ +.+.. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9988 5789999999999999999998886 599999999999999 55665 5655 89999999999999987543
Q ss_pred eccCCcCChhhhhcCCCC-ceEEeecCCCccCCccc-cccccceeEEEeC------------------------------
Q 005744 366 VEGQSNASLGELKQLSRL-TTLEVHIPDAQVMPQDL-VFVELERFRICIG------------------------------ 413 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~------------------------------ 413 (679)
.. ..+..+.+++.+ +.++++.|.+..++... ...+|+.|++..+
T Consensus 165 ~~----~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 165 YC----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CG----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred cH----HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 22 222333333221 56666666655444332 2223444433221
Q ss_pred --------------------------------CcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcc
Q 005744 414 --------------------------------DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK 461 (679)
Q Consensus 414 --------------------------------~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 461 (679)
..+..+..+++++.++++++....+|.++.. + +|++|++.+|...
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-F-GWQHLELVNCKFG- 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC-C-CCSEEEEESCBCS-
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc-C-CccEEeeccCccc-
Confidence 0112233345555555555544444444433 2 4555555544332
Q ss_pred cccccc------------------cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCccc
Q 005744 462 NVVHEL------------------DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR 523 (679)
Q Consensus 462 ~~~~~~------------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~ 523 (679)
.+|... .. ..+++|++|++++|. +..+.........+++|++|++++ +.+..++..
T Consensus 318 ~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~--- 391 (570)
T 2z63_A 318 QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSN--- 391 (570)
T ss_dssp SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCS-CSEEEEEEE---
T ss_pred ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCC-Ccccccccc---
Confidence 222210 00 234444444444443 111110011123445555555555 233333221
Q ss_pred CCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeecc
Q 005744 524 LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQ 603 (679)
Q Consensus 524 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 603 (679)
...+++|+.|++++| .+...++...+..+++|++|++++|.-....+ ..+..+++|++|++.
T Consensus 392 ----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 392 ----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------------GIFNGLSSLEVLKMA 453 (570)
T ss_dssp ----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCT-------------TTTTTCTTCCEEECT
T ss_pred ----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccch-------------hhhhcCCcCcEEECc
Confidence 234566666666653 34443332234556666666666663222111 135577888888888
Q ss_pred CCCCc-cccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccccCCCccccc
Q 005744 604 HLPQL-TSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (679)
Q Consensus 604 ~cp~L-~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~~ 672 (679)
+|.-. ..++.. +..++.++.+....|.--...+.....+++|+.|++++|+++.++.+.+...+
T Consensus 454 ~n~l~~~~~p~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 454 GNSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp TCEEGGGEECSC-----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCcCccccchhh-----hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 87422 134432 34566777777777654433344556789999999999999999887765433
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=275.75 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=92.7
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
+++++++|.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 466777777776766554 67777777777665 34433446777777777777777665 5667777777777777777
Q ss_pred cCC-cccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccCCCCC--cEEEccCCcc
Q 005744 292 VVD-VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT 362 (679)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~~ 362 (679)
+.. |.. .+++|++|++++|.++. +|..++++++|++|++++ +.++. ..++.+++| ++|++++|.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecccc
Confidence 666 444 67777777777777664 456677777777777776 33433 225556666 7777766655
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.3e-29 Score=283.04 Aligned_cols=343 Identities=11% Similarity=0.133 Sum_probs=274.7
Q ss_pred cCCccc-CCcceeeeeeccCCcccC-----------------CCchhhc--CCCCccEEEeCCCcCC-cCCccccCCcCC
Q 005744 224 ELPERL-GFLKLKLFLFFTENLSLQ-----------------IPDPFFE--GMTELRVLDLTGFRFH-SLPSSLGCLINL 282 (679)
Q Consensus 224 ~l~~~~-~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~-~lp~~i~~l~~L 282 (679)
.+|..+ .+++|++|++++|.+.+. +|..+ + ++++|++|++++|.+. .+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 366666 899999999999999875 88876 6 8999999999999966 689999999999
Q ss_pred CEEEcCCcc-cC--C-cccccCC------CCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCcccc-ccCcccccCC
Q 005744 283 RTLSLENCL-VV--D-VAIIGDL------KKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLK-EIRPNVISNL 349 (679)
Q Consensus 283 ~~L~L~~~~-~~--~-~~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~l 349 (679)
++|++++|. +. . |..++++ ++|++|++++|.++.+|. .++++++|++|++++| .+. .+| . ++.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hCCC
Confidence 999999998 76 3 7778776 999999999999999999 8999999999999994 555 888 4 8999
Q ss_pred CCCcEEEccCCcccceeccCCcCChhhhhcCCC-CceEEeecCCCccCCccc---cccccceeEEEeCCccc----CCC-
Q 005744 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL---VFVELERFRICIGDVWS----WSD- 420 (679)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~----~~~- 420 (679)
++|++|++++|.+. ..+..+..+++ |+.|++++|.+..+|..+ .+++|+.|++..+.... .+.
T Consensus 353 ~~L~~L~L~~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 353 IKLASLNLAYNQIT--------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp EEESEEECCSSEEE--------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCCCEEECCCCccc--------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 99999999999775 23345788888 999999999999998876 34489999998776432 344
Q ss_pred ------CCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccc-----hhhccccceEeeecCCCeeE
Q 005744 421 ------GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD-----EEGFARLRHLHVHNGPEILH 489 (679)
Q Consensus 421 ------~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~ 489 (679)
...+|+.|+++++....+|..+...+++|+.|++++|... .+|..... ..++++|++|++++|. +..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCc
Confidence 5668999999999988899888776899999999998765 66654421 0123499999999996 334
Q ss_pred EEeCCCccc--cccccceeeccccccccccccCcccCCCCccccCCccEEEEecC-----CCccccccHHHHHHhhcCcE
Q 005744 490 ILNSDGRVG--TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC-----HRVKHLFPFSLVKNLLQLQK 562 (679)
Q Consensus 490 ~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c-----~~L~~l~~~~~~~~l~~L~~ 562 (679)
++ .... .+++|++|++++ +.++.+|.. ...+++|+.|+++++ +++....|. .+..+++|++
T Consensus 503 lp---~~~~~~~l~~L~~L~Ls~-N~l~~ip~~-------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~ 570 (636)
T 4eco_A 503 LS---DDFRATTLPYLVGIDLSY-NSFSKFPTQ-------PLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQ 570 (636)
T ss_dssp CC---GGGSTTTCTTCCEEECCS-SCCSSCCCG-------GGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCE
T ss_pred cC---hhhhhccCCCcCEEECCC-CCCCCcChh-------hhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCE
Confidence 43 2233 889999999999 677765432 567999999999653 233333232 4578999999
Q ss_pred EEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCc
Q 005744 563 VKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQL 608 (679)
Q Consensus 563 L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L 608 (679)
|++++|. +..++.. .+++|+.|+|+++|-.
T Consensus 571 L~Ls~N~-l~~ip~~---------------~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 571 LQIGSND-IRKVNEK---------------ITPNISVLDIKDNPNI 600 (636)
T ss_dssp EECCSSC-CCBCCSC---------------CCTTCCEEECCSCTTC
T ss_pred EECCCCc-CCccCHh---------------HhCcCCEEECcCCCCc
Confidence 9999984 5777632 3489999999998633
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3e-29 Score=284.71 Aligned_cols=342 Identities=13% Similarity=0.169 Sum_probs=272.3
Q ss_pred CCccc-CCcceeeeeeccCCccc-----------------CCCchh-hcCCCCccEEEeCCCcCC-cCCccccCCcCCCE
Q 005744 225 LPERL-GFLKLKLFLFFTENLSL-----------------QIPDPF-FEGMTELRVLDLTGFRFH-SLPSSLGCLINLRT 284 (679)
Q Consensus 225 l~~~~-~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 284 (679)
+|..+ .+++|++|++++|.+.+ .+|..+ |.++++|++|++++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66666 89999999999999987 388876 349999999999999865 78999999999999
Q ss_pred EEcCCcc-cCC---cccccCCC-------CCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744 285 LSLENCL-VVD---VAIIGDLK-------KLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (679)
Q Consensus 285 L~L~~~~-~~~---~~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~ 351 (679)
|++++|. +.. |..++++. +|++|++++|.++.+|. .++++++|++|++++ +.++.+| . ++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC-C-CCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch-h-hcCCCc
Confidence 9999998 663 66666555 99999999999999999 899999999999999 5677888 3 999999
Q ss_pred CcEEEccCCcccceeccCCcCChhhhhcCCC-CceEEeecCCCccCCccc---cccccceeEEEeCCcccCCC-------
Q 005744 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL---VFVELERFRICIGDVWSWSD------- 420 (679)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~------- 420 (679)
|+.|++++|.+. ..+..+.++++ |+.|++++|.+..+|..+ ...+|+.|++..+......+
T Consensus 597 L~~L~Ls~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 597 LTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp ESEEECCSSCCS--------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred ceEEECcCCccc--------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 999999999875 23345788888 999999999999888776 23459999998776533221
Q ss_pred --CCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccc-----hhhccccceEeeecCCCeeEEEeC
Q 005744 421 --GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD-----EEGFARLRHLHVHNGPEILHILNS 493 (679)
Q Consensus 421 --~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~ 493 (679)
...+|+.|+|+++....+|.++...+++|+.|++++|... .+|..... ..++++|++|+|++|. +..++
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp-- 744 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLS-- 744 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCC--
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccch--
Confidence 2348999999999998999888766899999999998654 66665421 1245599999999995 44443
Q ss_pred CCccc--cccccceeeccccccccccccCcccCCCCccccCCccEEEEecC-----CCccccccHHHHHHhhcCcEEEEc
Q 005744 494 DGRVG--TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC-----HRVKHLFPFSLVKNLLQLQKVKVT 566 (679)
Q Consensus 494 ~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c-----~~L~~l~~~~~~~~l~~L~~L~i~ 566 (679)
.... .+++|+.|++++ +.++.++.. ...+++|+.|+++++ +++....| ..+..+++|++|+++
T Consensus 745 -~~l~~~~l~~L~~L~Ls~-N~L~~lp~~-------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 745 -DDFRATTLPYLSNMDVSY-NCFSSFPTQ-------PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIG 814 (876)
T ss_dssp -GGGSTTTCTTCCEEECCS-SCCSSCCCG-------GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECC
T ss_pred -HHhhhccCCCcCEEEeCC-CCCCccchh-------hhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECC
Confidence 2233 789999999999 577765432 568999999999873 23333323 246789999999999
Q ss_pred ccccchhhhccccccccCCCCccccccccccceeeccCCCC
Q 005744 567 DCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (679)
Q Consensus 567 ~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~ 607 (679)
+|. +..+|.. .+++|+.|+|++||-
T Consensus 815 ~N~-L~~Ip~~---------------l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 815 SND-IRKVDEK---------------LTPQLYILDIADNPN 839 (876)
T ss_dssp SSC-CCBCCSC---------------CCSSSCEEECCSCTT
T ss_pred CCC-CCccCHh---------------hcCCCCEEECCCCCC
Confidence 984 5777642 347999999999873
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=282.23 Aligned_cols=423 Identities=15% Similarity=0.116 Sum_probs=285.4
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCcC-CccccCCcCCCEEEcCCc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-PSSLGCLINLRTLSLENC 290 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L~L~~~ 290 (679)
+..+.+++.+..+|. -.+++++|++++|.+.+..|.. |.++++|++|++++|. +..+ |..++++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 567888899999998 6789999999999988555554 5999999999999995 4566 788999999999999999
Q ss_pred ccCC--cccccCCCCCcEEEecCCCCCc-cchh--hhcCCCCCEEcccCCcccccc-CcccccCCCCCcEEEccCCcccc
Q 005744 291 LVVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQW 364 (679)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~~~ 364 (679)
.+.. |..|+++++|++|++++|.++. +|.. ++++++|++|++++| .+..+ ++..++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9987 7899999999999999999985 5655 899999999999994 55555 33458999999999999997753
Q ss_pred eeccCCcCChhhhhcC--CCCceEEeecCCCccC-Cccc-cc------cccceeEEEeCCccc-----------------
Q 005744 365 KVEGQSNASLGELKQL--SRLTTLEVHIPDAQVM-PQDL-VF------VELERFRICIGDVWS----------------- 417 (679)
Q Consensus 365 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~~-~~------~~L~~L~l~~~~~~~----------------- 417 (679)
. ....+..+ ++|+.|+++.|.+... +..+ .+ ..|+.|++..+....
T Consensus 163 ~-------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 163 V-------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp C-------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred e-------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 2 22344444 7999999998876542 2222 22 248888886552110
Q ss_pred -----------------------CCCC--CCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccchhh
Q 005744 418 -----------------------WSDG--YETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEG 472 (679)
Q Consensus 418 -----------------------~~~~--~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 472 (679)
.+.. .++++.|+++++.....+......+++|+.|++++|......+..+ .+
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~ 312 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF---YG 312 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT---TT
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh---cC
Confidence 0011 2567788888776665544333346788888888877655556566 67
Q ss_pred ccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHH
Q 005744 473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFS 552 (679)
Q Consensus 473 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 552 (679)
+++|++|++++|.. ..+. ...+..+++|++|++++ +.+..++... ...+++|+.|+++++ .++.++.
T Consensus 313 l~~L~~L~Ls~N~l-~~~~--~~~~~~l~~L~~L~L~~-N~i~~~~~~~------~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNLL-GELY--SSNFYGLPKVAYIDLQK-NHIAIIQDQT------FKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp CSSCCEEEEESCCC-SCCC--SCSCSSCTTCCEEECCS-CCCCCCCSSC------SCSCCCCCEEEEETC-CSCCCSS--
T ss_pred CCCCCEEECCCCCC-CccC--HHHhcCCCCCCEEECCC-CCCCccChhh------hcCCCCCCEEECCCC-CCCcccC--
Confidence 88888888888752 2221 12345788888888888 4666655433 346788888888884 5666532
Q ss_pred HHHHhhcCcEEEEcccccchhhhccccccc---cCCC------CccccccccccceeeccCCCCccccccCCC---CC--
Q 005744 553 LVKNLLQLQKVKVTDCTNLKLIVGKESENS---AHKN------GSISGVYFRKLHFLKLQHLPQLTSSGFDLE---TP-- 618 (679)
Q Consensus 553 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~---~~~~------~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~---~p-- 618 (679)
+++|+.|++++| .+..++....... ...+ ....+..+++|++|+++++ ++..++.... .+
T Consensus 380 ----~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 380 ----IPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSL 453 (844)
T ss_dssp ----CCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTC
T ss_pred ----CCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCcc
Confidence 677888888776 3444432210000 0000 0001235777777777765 3443322110 01
Q ss_pred ---------------------cccCCCCCccccCCCCCCCccCccc-cccCCCcceeeccccccccccCCCcc
Q 005744 619 ---------------------TNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVEKIWLNSFS 669 (679)
Q Consensus 619 ---------------------~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~~l~~~~~~ 669 (679)
.+..++.++.+....+ .+..++.. ...+++|+.|++++|+++.+|.+.++
T Consensus 454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 1223344444444433 23334333 34578888888888888888888775
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=273.88 Aligned_cols=417 Identities=14% Similarity=0.110 Sum_probs=247.2
Q ss_pred cchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccc
Q 005744 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL 276 (679)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i 276 (679)
+.++.+|....+++++|++++|.+..++. .+ .+++|++|++++|.+.+..|. .|.++++|++|++++|.++.+|..
T Consensus 10 n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 10 NGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp SCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCEEECC-
T ss_pred CCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceeecCcc-
Confidence 44556666556899999999999988874 34 899999999999998854454 459999999999999999999877
Q ss_pred cCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCC--CEEcccCCcc--ccccCcccccC-
Q 005744 277 GCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCSK--LKEIRPNVISN- 348 (679)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--l~~lp~~~l~~- 348 (679)
.+++|++|++++|.+.. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|.. ++.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cccc
Confidence 89999999999999876 5899999999999999999886 457888888 9999998543 2333322 443
Q ss_pred -------------------------CCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc-----CCc
Q 005744 349 -------------------------LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-----MPQ 398 (679)
Q Consensus 349 -------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~ 398 (679)
+++|+.|++++|....... .....+..+..+++|+.|+++.+.+.. ++.
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-eeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence 4455555555442000000 000122345566666666666554321 111
Q ss_pred cccccccceeEEEeCC----cccCC-----CCCCCcceEEecCCCcceec-hhHHHHh--hcccccccccccCccccccc
Q 005744 399 DLVFVELERFRICIGD----VWSWS-----DGYETSKTLKLQLNNSTYLG-YGMKMLL--KRTEDLHLDELAGFKNVVHE 466 (679)
Q Consensus 399 ~~~~~~L~~L~l~~~~----~~~~~-----~~~~~l~~L~L~~~~~~~~~-~~~~~~l--~~L~~L~l~~~~~~~~~~~~ 466 (679)
....++|+.|++..+. .+..+ ..++.|+.++++.+.. .+| .++...+ .+|+.|++++|.... .+.
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~- 319 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC- 319 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC-
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-ccc-
Confidence 1123466777665443 22333 5556666666666555 444 3444332 236666666654322 110
Q ss_pred ccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcc
Q 005744 467 LDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVK 546 (679)
Q Consensus 467 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 546 (679)
+ ..+++|++|++++|.....+ ......+++|++|++++ ++++.++... ...+.+++|+.|++++| .++
T Consensus 320 ~---~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~-N~l~~l~~~~----~~~~~l~~L~~L~Ls~N-~l~ 387 (520)
T 2z7x_B 320 P---SKISPFLHLDFSNNLLTDTV---FENCGHLTELETLILQM-NQLKELSKIA----EMTTQMKSLQQLDISQN-SVS 387 (520)
T ss_dssp C---SSCCCCCEEECCSSCCCTTT---TTTCCCCSSCCEEECCS-SCCCBHHHHH----HHHTTCTTCCEEECCSS-CCB
T ss_pred h---hhCCcccEEEeECCccChhh---hhhhccCCCCCEEEccC-CccCccccch----HHHhhCCCCCEEECCCC-cCC
Confidence 1 34666667776666421111 12234566666666666 3444322100 01235666666666664 344
Q ss_pred c-cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccc-cccceeeccCCCCccccccCCCCCcccCCC
Q 005744 547 H-LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF-RKLHFLKLQHLPQLTSSGFDLETPTNTQGS 624 (679)
Q Consensus 547 ~-l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~ 624 (679)
. ++ ...+..+++|++|++++|.--..++. .+ ++|+.|++++| +++.++... ..++
T Consensus 388 ~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------~l~~~L~~L~Ls~N-~l~~ip~~~-----~~l~ 444 (520)
T 2z7x_B 388 YDEK-KGDCSWTKSLLSLNMSSNILTDTIFR----------------CLPPRIKVLDLHSN-KIKSIPKQV-----VKLE 444 (520)
T ss_dssp CCGG-GCSCCCCTTCCEEECCSSCCCGGGGG----------------SCCTTCCEEECCSS-CCCCCCGGG-----GGCT
T ss_pred cccc-cchhccCccCCEEECcCCCCCcchhh----------------hhcccCCEEECCCC-cccccchhh-----hcCC
Confidence 4 42 22234456666666666632222221 12 56666666665 455544432 2334
Q ss_pred CCccccCCCCCCCccCccc-cccCCCcceeeccccccc
Q 005744 625 NPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVE 661 (679)
Q Consensus 625 ~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~ 661 (679)
.++.+...++ .+..++.. ...+++|+.|++++|.+.
T Consensus 445 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCc
Confidence 4455554443 23344433 334566666766666543
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3e-28 Score=262.50 Aligned_cols=349 Identities=18% Similarity=0.236 Sum_probs=277.4
Q ss_pred hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 286 (679)
....+++.++++++.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.++.++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 346789999999999998887568999999999999887 4454 6899999999999999998877 99999999999
Q ss_pred cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (679)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (679)
+++|.+...+.++++++|++|++++|.++.+|. ++.+++|++|++.+ .+..+++ ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 999999884459999999999999999998874 89999999999964 4555554 889999999999999763
Q ss_pred ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEEecCCCcceechhHHH
Q 005744 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLKLQLNNSTYLGYGMKM 444 (679)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~L~~~~~~~~~~~~~~ 444 (679)
.+..+..+++|+.|++++|.+...+....+++|+.|++..+.... .+..+++|+.|+++++.....+. +.
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~- 262 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LS- 262 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GT-
T ss_pred ------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hh-
Confidence 234688899999999999988877664478899999997765432 45667889999999887766654 33
Q ss_pred HhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccC
Q 005744 445 LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRL 524 (679)
Q Consensus 445 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 524 (679)
.+++|+.|++++|... .++. + ..+++|++|++++|. +..+ .....+++|+.|++++| .+..+..
T Consensus 263 ~l~~L~~L~l~~n~l~-~~~~-~---~~l~~L~~L~L~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~----- 326 (466)
T 1o6v_A 263 GLTKLTELKLGANQIS-NISP-L---AGLTALTNLELNENQ-LEDI----SPISNLKNLTYLTLYFN-NISDISP----- 326 (466)
T ss_dssp TCTTCSEEECCSSCCC-CCGG-G---TTCTTCSEEECCSSC-CSCC----GGGGGCTTCSEEECCSS-CCSCCGG-----
T ss_pred cCCCCCEEECCCCccC-cccc-c---cCCCccCeEEcCCCc-ccCc----hhhcCCCCCCEEECcCC-cCCCchh-----
Confidence 3688999999988654 3333 4 778999999999886 3222 23568899999999985 5655432
Q ss_pred CCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccC
Q 005744 525 NEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQH 604 (679)
Q Consensus 525 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 604 (679)
...+++|+.|++++| +++.++ .+..+++|+.|++++|. +..++ .+..+++|+.|++.+
T Consensus 327 ---~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT--------------PLANLTRITQLGLND 384 (466)
T ss_dssp ---GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG--------------GGTTCTTCCEEECCC
T ss_pred ---hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc--------------hhhcCCCCCEEeccC
Confidence 457899999999986 677763 45688999999999884 44443 245899999999998
Q ss_pred CCCccccccC
Q 005744 605 LPQLTSSGFD 614 (679)
Q Consensus 605 cp~L~~l~~~ 614 (679)
|+ +..+|..
T Consensus 385 n~-~~~~p~~ 393 (466)
T 1o6v_A 385 QA-WTNAPVN 393 (466)
T ss_dssp EE-EECCCBC
T ss_pred Cc-ccCCchh
Confidence 74 5555543
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=9.5e-28 Score=269.89 Aligned_cols=440 Identities=18% Similarity=0.132 Sum_probs=263.1
Q ss_pred ecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC
Q 005744 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP 273 (679)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 273 (679)
+.+..++.+|...+.++++|++++|.++.+++. + ++++|++|++++|.+. .++++.|.++++|++|+|++|+++.+|
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 445677888888888999999999999999864 4 8999999999999987 577777799999999999999999987
Q ss_pred c-cccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccC
Q 005744 274 S-SLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (679)
Q Consensus 274 ~-~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 348 (679)
. .|.++++|++|++++|.+.. + ..|+++++|++|++++|.++. +|..++.+++|++|++++ +.++.+++..+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccc
Confidence 5 58999999999999999988 4 569999999999999999874 578899999999999999 6777776665655
Q ss_pred CCCCc----EEEccCCcccceeccCC-----------------cCChhhhhcCCCCceEEeecCCC--------------
Q 005744 349 LTRLE----ELYMGNSFTQWKVEGQS-----------------NASLGELKQLSRLTTLEVHIPDA-------------- 393 (679)
Q Consensus 349 l~~L~----~L~l~~~~~~~~~~~~~-----------------~~~~~~l~~l~~L~~L~l~~~~~-------------- 393 (679)
+.+++ .++++.+.+.....+.. ......+..+..++...+..+..
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 54443 45565554432211100 00001122333333332221100
Q ss_pred ----------------c----cCCccc-cccccceeEEEeCCcc--cCCCCCCCcceEEecCCCcceechhH--------
Q 005744 394 ----------------Q----VMPQDL-VFVELERFRICIGDVW--SWSDGYETSKTLKLQLNNSTYLGYGM-------- 442 (679)
Q Consensus 394 ----------------~----~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~l~~L~L~~~~~~~~~~~~-------- 442 (679)
. ...... ...+++.+.+...... ..+.....++.+.+..+.....+...
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 0 000000 1223333333222111 11222334444444433222111100
Q ss_pred -----------HHHhhcccccccccccCccc--ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecc
Q 005744 443 -----------KMLLKRTEDLHLDELAGFKN--VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLH 509 (679)
Q Consensus 443 -----------~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 509 (679)
...+++|+.|+++++..... .+..+ ..+.+|+++++..+... .+ ......+++|+.+.+.
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---~~~~~L~~L~~~~~~~~-~~---~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD---FGTISLKYLDLSFNGVI-TM---SSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH---HSCSCCCEEECCSCSEE-EE---CSCCTTCTTCCEEECT
T ss_pred cccccCCCCcccccccccccchhhccccccccccccch---hhhhhhhhhhccccccc-cc---cccccccccccchhhh
Confidence 00134555555555433211 11111 33455555555554321 11 1223456677777776
Q ss_pred ccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCcc
Q 005744 510 NLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI 589 (679)
Q Consensus 510 ~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~ 589 (679)
.++.....+... ...+++|+.++++.+ .+...++ .....+++|++|++++|.....+...
T Consensus 429 ~~~~~~~~~~~~------~~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~------------ 488 (635)
T 4g8a_A 429 HSNLKQMSEFSV------FLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD------------ 488 (635)
T ss_dssp TSEEESTTSSCT------TTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS------------
T ss_pred hccccccccccc------ccccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCch------------
Confidence 644433322222 235667777777663 4554433 23456677777777777655544321
Q ss_pred ccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccc-cccCCCcceeeccccccccccCCCc
Q 005744 590 SGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVEKIWLNSF 668 (679)
Q Consensus 590 ~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~~l~~~~~ 668 (679)
.+..+++|++|+|++| +++.++... +..+++++.+....+ .+..++.. ...+++|+.|++++|+++.++++.+
T Consensus 489 ~~~~l~~L~~L~Ls~N-~L~~l~~~~----f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQC-QLEQLSPTA----FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTT----TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred hhhhccccCEEECCCC-ccCCcChHH----HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 3557777888888776 566654332 234555666665554 34444332 3456788888888888888877766
Q ss_pred cc
Q 005744 669 SA 670 (679)
Q Consensus 669 ~~ 670 (679)
..
T Consensus 563 ~~ 564 (635)
T 4g8a_A 563 QH 564 (635)
T ss_dssp TC
T ss_pred Hh
Confidence 43
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1e-28 Score=272.54 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=134.7
Q ss_pred hhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc--CCccccCCcCC
Q 005744 207 KIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINL 282 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L 282 (679)
...+++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|+++++|++|++++|.++. .|..++++++|
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 567899999999999987774 34 8999999999999987 5666666999999999999999985 47789999999
Q ss_pred CEEEcCCcccC-C-c-ccccCCCCCcEEEecCCCCCc-cchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744 283 RTLSLENCLVV-D-V-AIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (679)
Q Consensus 283 ~~L~L~~~~~~-~-~-~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (679)
++|++++|... . + ..++++++|++|++++|.++. .|..++++++|++|++++ +....+|...++.+++|++|+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc-CcccccchhhHhhcccccEEEcc
Confidence 99999999844 4 3 689999999999999999985 688899999999999998 55677776655679999999999
Q ss_pred CCcccc
Q 005744 359 NSFTQW 364 (679)
Q Consensus 359 ~~~~~~ 364 (679)
+|.+..
T Consensus 205 ~n~l~~ 210 (549)
T 2z81_A 205 DTNLAR 210 (549)
T ss_dssp SCBCTT
T ss_pred CCcccc
Confidence 987754
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.1e-28 Score=262.12 Aligned_cols=372 Identities=18% Similarity=0.181 Sum_probs=260.2
Q ss_pred ecccchhhhhhhhcCCCeEEEccCCCcccC-Cccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-
Q 005744 196 QNVADLKEELDKIDEAPTAISIPFRGIYEL-PERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL- 272 (679)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l- 272 (679)
..+..+..+|. .++++++|++++|.+..+ |..+ .+++|++|++++|.+.+.++...|.++++|++|++++|.++.+
T Consensus 17 c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 17 CINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp CCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred cCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC
Confidence 34455666665 668899999999999776 4444 8999999999999887778777779999999999999999876
Q ss_pred CccccCCcCCCEEEcCCcccCC--ccc--ccCCCCCcEEEecCCCCCcc-chh-hhcCCCCCEEcccCCccccccCcccc
Q 005744 273 PSSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQL-PRE-IGQLTCLKLLDLSNCSKLKEIRPNVI 346 (679)
Q Consensus 273 p~~i~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~l 346 (679)
|..++++++|++|++++|.+.. +.. ++++++|++|++++|.++.+ |.. ++++++|++|++++ +.++.+++..+
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l 174 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDL 174 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTS
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhh
Confidence 7889999999999999999987 444 89999999999999999877 544 78999999999999 56666665556
Q ss_pred cCC--CCCcEEEccCCcccceeccCCc-CChhhhhcCCCCceEEeecCCCccCC-ccc----cccccceeEEEeCCcccC
Q 005744 347 SNL--TRLEELYMGNSFTQWKVEGQSN-ASLGELKQLSRLTTLEVHIPDAQVMP-QDL----VFVELERFRICIGDVWSW 418 (679)
Q Consensus 347 ~~l--~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~----~~~~L~~L~l~~~~~~~~ 418 (679)
..+ .+|+.|+++++.+......... .....+..+++|+.|++++|.+.... ..+ ...+|+.|++..+.....
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 665 6899999998876532211000 00122345678999999988775322 222 236677776654432211
Q ss_pred CCCCCCcceEEecCCCcceechhHHH-HhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCcc
Q 005744 419 SDGYETSKTLKLQLNNSTYLGYGMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRV 497 (679)
Q Consensus 419 ~~~~~~l~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 497 (679)
......+... . +..+.. ..++|+.|++++|......+..+ ..+++|++|++++|. +..+. ...+
T Consensus 255 ~~~~~~~~~~-----~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~--~~~~ 319 (455)
T 3v47_A 255 SFGHTNFKDP-----D----NFTFKGLEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKID--DNAF 319 (455)
T ss_dssp CTTCCSSCCC-----C----TTTTGGGTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEEC--TTTT
T ss_pred ccchhhhccC-----c----ccccccccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccC--hhHh
Confidence 1000000000 0 000110 13578888888887766666666 778889999998885 33332 2234
Q ss_pred ccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhcc
Q 005744 498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGK 577 (679)
Q Consensus 498 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~ 577 (679)
..+++|++|++++ +.++.+.... .+.+++|++|++++| +++.+++ ..+..+++|++|++++| .++.++..
T Consensus 320 ~~l~~L~~L~Ls~-N~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 320 WGLTHLLKLNLSQ-NFLGSIDSRM------FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp TTCTTCCEEECCS-SCCCEECGGG------GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCcccCCEEECCC-CccCCcChhH------hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCHh
Confidence 5788899999988 4666654333 347888999999885 6777644 34577889999999887 56665532
Q ss_pred ccccccCCCCccccccccccceeeccCCC
Q 005744 578 ESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 578 ~~~~~~~~~~~~~l~~l~~L~~L~l~~cp 606 (679)
.+..+++|++|+++++|
T Consensus 390 ------------~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 390 ------------IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ------------TTTTCTTCCEEECCSSC
T ss_pred ------------HhccCCcccEEEccCCC
Confidence 35578899999998865
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.4e-27 Score=255.50 Aligned_cols=348 Identities=19% Similarity=0.241 Sum_probs=229.9
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (679)
.+++++.|.+.++.+. .+|. +..+++|++|++++|.++.+|. +.++++|++|++++|.+.....++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 4788999999998876 5664 5889999999999999999987 9999999999999999998333999999999999
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (679)
++|.++.+|. +.++++|++|++++ +.+..++. ++.+++|++|+++++ . .....+.++++|+.|+++
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~~~-~---------~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSS-NTISDISA--LSGLTSLQQLSFGNQ-V---------TDLKPLANLTTLERLDIS 185 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEE-EEECCCGG--GTTCTTCSEEEEEES-C---------CCCGGGTTCTTCCEEECC
T ss_pred CCCCCCCChH-HcCCCCCCEEECCC-CccCCChh--hccCCcccEeecCCc-c---------cCchhhccCCCCCEEECc
Confidence 9999999986 99999999999999 56777764 899999999998643 2 123458899999999999
Q ss_pred cCCCccCCccccccccceeEEEeCCccc--CCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccc
Q 005744 390 IPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL 467 (679)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 467 (679)
+|.+..++....+++|+.|++..+.... .+..+++|+.|+++++.....+ .+.. +++|+.|++++|..... +. +
T Consensus 186 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~-l~~L~~L~l~~n~l~~~-~~-~ 261 (466)
T 1o6v_A 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLAS-LTNLTDLDLANNQISNL-AP-L 261 (466)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGG-CTTCSEEECCSSCCCCC-GG-G
T ss_pred CCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhc-CCCCCEEECCCCccccc-hh-h
Confidence 9988876554467777777776554322 1334555666666655444332 2222 45566666665543222 21 2
Q ss_pred cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccc
Q 005744 468 DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKH 547 (679)
Q Consensus 468 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 547 (679)
..+++|++|++++|.. ..+ .....+++|++|++++ +.++.++. .+.+++|+.|++++| +++.
T Consensus 262 ---~~l~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~L~~-n~l~~~~~--------~~~l~~L~~L~L~~n-~l~~ 323 (466)
T 1o6v_A 262 ---SGLTKLTELKLGANQI-SNI----SPLAGLTALTNLELNE-NQLEDISP--------ISNLKNLTYLTLYFN-NISD 323 (466)
T ss_dssp ---TTCTTCSEEECCSSCC-CCC----GGGTTCTTCSEEECCS-SCCSCCGG--------GGGCTTCSEEECCSS-CCSC
T ss_pred ---hcCCCCCEEECCCCcc-Ccc----ccccCCCccCeEEcCC-CcccCchh--------hcCCCCCCEEECcCC-cCCC
Confidence 4556666666665531 111 1134555666666655 33433321 235556666666554 3444
Q ss_pred cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCc
Q 005744 548 LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPG 627 (679)
Q Consensus 548 l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~ 627 (679)
+++ +..+++|++|++++| .+..++ .+..+++|+.|++++|+ +..++
T Consensus 324 ~~~---~~~l~~L~~L~l~~n-~l~~~~--------------~l~~l~~L~~L~l~~n~-l~~~~--------------- 369 (466)
T 1o6v_A 324 ISP---VSSLTKLQRLFFYNN-KVSDVS--------------SLANLTNINWLSAGHNQ-ISDLT--------------- 369 (466)
T ss_dssp CGG---GGGCTTCCEEECCSS-CCCCCG--------------GGTTCTTCCEEECCSSC-CCBCG---------------
T ss_pred chh---hccCccCCEeECCCC-ccCCch--------------hhccCCCCCEEeCCCCc-cCccc---------------
Confidence 432 345556666666555 333332 23355566666665542 22211
Q ss_pred cccCCCCCCCccCccccccCCCcceeeccccccccccCC
Q 005744 628 IIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN 666 (679)
Q Consensus 628 ~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l~~~ 666 (679)
+ ...+++|+.|++++|.++.+|..
T Consensus 370 --------------~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 370 --------------P-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp --------------G-GTTCTTCCEEECCCEEEECCCBC
T ss_pred --------------h-hhcCCCCCEEeccCCcccCCchh
Confidence 1 33457778888888777776543
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-27 Score=264.25 Aligned_cols=402 Identities=15% Similarity=0.130 Sum_probs=198.8
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
++++++++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 566666666666665442 56666666666655 33433346666666666666666655 4556666666666666666
Q ss_pred cCC-cccccCCCCCcEEEecCCCCCccc--hhhhcCCCCCEEcccCCccccccCcccccCCCCC--cEEEccCCcc--cc
Q 005744 292 VVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT--QW 364 (679)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~~--~~ 364 (679)
+.. |.. .+++|++|++++|.++.+| ..++++++|++|++++ +.+.... ++.+++| ++|++++|.+ ..
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccccccc
Confidence 665 433 5666666666666666543 4566666666666666 3343321 3333444 6666666544 11
Q ss_pred eeccCCc-------------------CChhhhhcCCCCceEEeecCC----------------------------Cc---
Q 005744 365 KVEGQSN-------------------ASLGELKQLSRLTTLEVHIPD----------------------------AQ--- 394 (679)
Q Consensus 365 ~~~~~~~-------------------~~~~~l~~l~~L~~L~l~~~~----------------------------~~--- 394 (679)
..++... .....+..+++|+.+++++|. +.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 1100000 000011223344444444432 11
Q ss_pred --cCCccccccccceeEEEeCCcc----cCC-----CCCCCcceEEecCCCcceec-hhHHHHh--hcccccccccccCc
Q 005744 395 --VMPQDLVFVELERFRICIGDVW----SWS-----DGYETSKTLKLQLNNSTYLG-YGMKMLL--KRTEDLHLDELAGF 460 (679)
Q Consensus 395 --~~~~~~~~~~L~~L~l~~~~~~----~~~-----~~~~~l~~L~L~~~~~~~~~-~~~~~~l--~~L~~L~l~~~~~~ 460 (679)
.++......+|+.|++..+... ... ..+..|+.+++..+.. .+| .++...+ .+|+.|++++|...
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcc
Confidence 1111112235666666544322 111 2233333333333333 333 2333322 34666766666432
Q ss_pred ccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEe
Q 005744 461 KNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540 (679)
Q Consensus 461 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 540 (679)
.. +. . ..+++|++|++++|.....+ ......+++|++|++++ ++++.++.... ..+.+++|+.|+++
T Consensus 345 ~~-~~-~---~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~-N~l~~~~~~~~----~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 345 HM-VC-P---PSPSSFTFLNFTQNVFTDSV---FQGCSTLKRLQTLILQR-NGLKNFFKVAL----MTKNMSSLETLDVS 411 (562)
T ss_dssp CC-CC-C---SSCCCCCEEECCSSCCCTTT---TTTCCSCSSCCEEECCS-SCCCBTTHHHH----TTTTCTTCCEEECT
T ss_pred cc-cC-c---cCCCCceEEECCCCccccch---hhhhcccCCCCEEECCC-CCcCCcccchh----hhcCCCCCCEEECC
Confidence 11 10 1 34667777777766422111 12235666777777776 45554432111 13456677777776
Q ss_pred cCCCccc-cccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccc-cccceeeccCCCCccccccCCCCC
Q 005744 541 GCHRVKH-LFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF-RKLHFLKLQHLPQLTSSGFDLETP 618 (679)
Q Consensus 541 ~c~~L~~-l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~cp~L~~l~~~~~~p 618 (679)
++ +++. ++. ..+..+++|++|++++|.--..++ ..+ ++|++|+++++ +++.+|....
T Consensus 412 ~N-~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~----------------~~l~~~L~~L~L~~N-~l~~ip~~~~-- 470 (562)
T 3a79_B 412 LN-SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVF----------------RCLPPKVKVLDLHNN-RIMSIPKDVT-- 470 (562)
T ss_dssp TS-CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGG----------------SSCCTTCSEEECCSS-CCCCCCTTTT--
T ss_pred CC-cCCCccCh-hhhcCcccCCEEECCCCCCCcchh----------------hhhcCcCCEEECCCC-cCcccChhhc--
Confidence 64 4444 422 233456677777777663212221 123 56777777765 5665554432
Q ss_pred cccCCCCCccccCCCCCCCccCccc-cccCCCcceeeccccccc
Q 005744 619 TNTQGSNPGIIAEGDPKDFTSLFNE-RVVFPSLKKLKLSSINVE 661 (679)
Q Consensus 619 ~l~~~~~l~~~~~~~~~~l~~~~~~-~~~~p~L~~L~l~~~~l~ 661 (679)
.++.++.+...++ .+..++.. ...+++|+.|++++|.+.
T Consensus 471 ---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 471 ---HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp ---SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ---CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 3344444544443 23344443 345667777777666543
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.1e-26 Score=240.64 Aligned_cols=303 Identities=17% Similarity=0.202 Sum_probs=181.4
Q ss_pred hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
..+++++++++++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+| .+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 45566777777666666554335566666666665554 2333 455666666666666555554 3555666666666
Q ss_pred CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++ +.+..++. ++.+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh--hccCCCCCEEEccCCccc----
Confidence 66655553235556666666666653222223355556666666655 33444433 455555666665555442
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK 447 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~ 447 (679)
.+..+..+++|+.|++++|.+...+ . +. .++
T Consensus 191 -----~~~~~~~l~~L~~L~l~~n~l~~~~------------------------------------------~-~~-~~~ 221 (347)
T 4fmz_A 191 -----DISPLASLTSLHYFTAYVNQITDIT------------------------------------------P-VA-NMT 221 (347)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCCCCG------------------------------------------G-GG-GCT
T ss_pred -----ccccccCCCccceeecccCCCCCCc------------------------------------------h-hh-cCC
Confidence 1122445555555555554433221 1 11 256
Q ss_pred cccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCC
Q 005744 448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED 527 (679)
Q Consensus 448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 527 (679)
+|++|++++|... .++. + ..+++|++|++++|. +..+ .....+++|++|++++| .++.++.
T Consensus 222 ~L~~L~l~~n~l~-~~~~-~---~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~-------- 282 (347)
T 4fmz_A 222 RLNSLKIGNNKIT-DLSP-L---ANLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSN-QISDISV-------- 282 (347)
T ss_dssp TCCEEECCSSCCC-CCGG-G---TTCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSS-CCCCCGG--------
T ss_pred cCCEEEccCCccC-CCcc-h---hcCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCC-ccCCChh--------
Confidence 6777777776543 3333 3 678888888888875 2222 33467888888888884 6665521
Q ss_pred ccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 528 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp 606 (679)
...+++|+.|++++| .++..++ ..+..+++|++|++++|+ +..++ .+..+++|++|++++|+
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR--------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG--------------GGGGCTTCSEESSSCC-
T ss_pred hcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc--------------Chhhhhccceeehhhhc
Confidence 457899999999997 5666633 457889999999999985 55554 24589999999999875
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.9e-26 Score=245.70 Aligned_cols=375 Identities=16% Similarity=0.146 Sum_probs=265.0
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cC-CccccCCcCCCEEEcCC
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SL-PSSLGCLINLRTLSLEN 289 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l-p~~i~~l~~L~~L~L~~ 289 (679)
-+.++.+++.+..+|. -.++|++|++++|.+.+..|.. |.++++|++|++++|.+. .+ |..+.++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3467788888888887 3488999999999987544544 589999999999999986 55 56799999999999999
Q ss_pred cccCC--cccccCCCCCcEEEecCCCCCc-cchh--hhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCccc
Q 005744 290 CLVVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 290 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~ 363 (679)
|.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++ +.+..+++ ..++++++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCccc
Confidence 99887 7789999999999999999985 4554 88999999999999 55666644 44789999999999999775
Q ss_pred ceeccCCcCChhhhhcC--CCCceEEeecCCCccCCccc-cccccceeEEEeCCcccCCCCCCCcceEEecCCCcce-ec
Q 005744 364 WKVEGQSNASLGELKQL--SRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY-LG 439 (679)
Q Consensus 364 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~-~~ 439 (679)
.... ..+..+ .+|+.|+++.+.+..++... ... ........++|+.|+++++.... .+
T Consensus 168 ~~~~-------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-----------~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 168 SICE-------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-----------KCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp CCCT-------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-----------HHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred ccCh-------hhhhccccccccccccccCcccccchhhcccc-----------ccccccccceeeeEecCCCcccccch
Confidence 3222 233333 57889999888777655432 000 00112234566777777765443 33
Q ss_pred hhHHHH--hhcccccccccccCcccc----------cccccchhhccccceEeeecCCCeeEEEeCCCccccccccceee
Q 005744 440 YGMKML--LKRTEDLHLDELAGFKNV----------VHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLF 507 (679)
Q Consensus 440 ~~~~~~--l~~L~~L~l~~~~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 507 (679)
..+... .++|+.|++++|...... +..+.. ...++|++|++++|...... ......+++|++|+
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALL---KSVFSHFTDLEQLT 305 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEEC---TTTTTTCTTCCEEE
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCccccccc-ccccCceEEEecCccccccc---hhhcccCCCCCEEE
Confidence 333332 267888888776433221 111111 23478999999998643322 23346789999999
Q ss_pred ccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCC
Q 005744 508 LHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNG 587 (679)
Q Consensus 508 l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~ 587 (679)
+++ +.++.+.... ...+++|+.|++++| .++.+++ ..+..+++|++|++++| .+..++..
T Consensus 306 Ls~-n~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~---------- 365 (455)
T 3v47_A 306 LAQ-NEINKIDDNA------FWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGDQ---------- 365 (455)
T ss_dssp CTT-SCCCEECTTT------TTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECTT----------
T ss_pred CCC-CcccccChhH------hcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccChh----------
Confidence 998 5676654433 447899999999995 6777744 34678899999999988 45554322
Q ss_pred ccccccccccceeeccCCCCccccccCCCCCcccCCCCCccccCCCCCCCccCccccccCCCcceeeccccccccc
Q 005744 588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKI 663 (679)
Q Consensus 588 ~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~~l 663 (679)
.+..+++|++|+++++ +++.++... ...+++|+.|++++|.++.-
T Consensus 366 --~~~~l~~L~~L~L~~N-~l~~~~~~~----------------------------~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 366 --SFLGLPNLKELALDTN-QLKSVPDGI----------------------------FDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp --TTTTCTTCCEEECCSS-CCSCCCTTT----------------------------TTTCTTCCEEECCSSCBCCC
T ss_pred --hccccccccEEECCCC-ccccCCHhH----------------------------hccCCcccEEEccCCCcccC
Confidence 4668999999999985 566655431 12447888888888866543
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.8e-26 Score=245.13 Aligned_cols=264 Identities=13% Similarity=0.112 Sum_probs=187.9
Q ss_pred hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 286 (679)
...+++++|++++|.+..+|....+++|++|++++|.+.+ +| ++.+++|++|++++|.++.+| ++++++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 4467899999999999888854589999999999999874 44 588999999999999999886 88999999999
Q ss_pred cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (679)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (679)
+++|.+...+ ++++++|++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--
Confidence 9999988843 899999999999999999885 8899999999999977777773 7889999999999997742
Q ss_pred ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc-CCCCCCCcceEEecCCCcceechhHHHH
Q 005744 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS-WSDGYETSKTLKLQLNNSTYLGYGMKML 445 (679)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~L~~~~~~~~~~~~~~~ 445 (679)
+ .+..+++|+.|++++|.+..++ ...+++|+.|++..+.... .+..+++|+.|+++++.....|.+ .
T Consensus 185 -------l-~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~---~ 252 (457)
T 3bz5_A 185 -------L-DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVS---T 252 (457)
T ss_dssp -------C-CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCT---T
T ss_pred -------e-ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHH---H
Confidence 1 1677889999999998887652 1245566666654443221 123344444444444433333211 1
Q ss_pred hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccc
Q 005744 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC 518 (679)
Q Consensus 446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 518 (679)
+++|+.|++++ .+|+.|++++|.....++. ..+++|+.|++++|..+..++
T Consensus 253 l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 253 LSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEEC-----TTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCCEEeccC-----------------CCCCEEECCCCccCCcccc-----cccccCCEEECCCCcccceec
Confidence 22222222111 1345555666655544432 356777777777766555543
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.6e-26 Score=240.56 Aligned_cols=306 Identities=14% Similarity=0.182 Sum_probs=226.1
Q ss_pred ccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCC
Q 005744 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKL 304 (679)
Q Consensus 228 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L 304 (679)
...++++++|++.++.+. .+|..+|..+++|++|++++|.++.+| ..+..+++|++|++++|.+.. +..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346788888888887765 678777788888888888888888775 478888888888888888877 4568888888
Q ss_pred cEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCC
Q 005744 305 EILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRL 383 (679)
Q Consensus 305 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 383 (679)
++|++++|.++.+|.. ++++++|++|++++ +.++.+++..++.+++|++|++++|.+... .+..+++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~~L 188 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPSL 188 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------CGGGCTTC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc----------cccccccc
Confidence 9999988888888876 47888888888888 567777766688888888888888876421 35667788
Q ss_pred ceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccc
Q 005744 384 TTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNV 463 (679)
Q Consensus 384 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 463 (679)
+.|++++|.+..++ ....++.|+++++.....+... .++|+.|++++|.... .
T Consensus 189 ~~L~l~~n~l~~~~-----------------------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~-~ 241 (390)
T 3o6n_A 189 FHANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-T 241 (390)
T ss_dssp SEEECCSSCCSEEE-----------------------CCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCC-C
T ss_pred ceeecccccccccC-----------------------CCCcceEEECCCCeeeeccccc---cccccEEECCCCCCcc-c
Confidence 88888877654322 1234555555555555544332 4678888888876533 2
Q ss_pred cccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCC
Q 005744 464 VHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH 543 (679)
Q Consensus 464 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 543 (679)
..+ ..+++|++|++++|. +..+. ...+..+++|++|++++ ++++.++.. ...+++|+.|++++|
T Consensus 242 -~~l---~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~-------~~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 242 -AWL---LNYPGLVEVDLSYNE-LEKIM--YHPFVKMQRLERLYISN-NRLVALNLY-------GQPIPTLKVLDLSHN- 305 (390)
T ss_dssp -GGG---GGCTTCSEEECCSSC-CCEEE--SGGGTTCSSCCEEECCS-SCCCEEECS-------SSCCTTCCEEECCSS-
T ss_pred -HHH---cCCCCccEEECCCCc-CCCcC--hhHccccccCCEEECCC-CcCcccCcc-------cCCCCCCCEEECCCC-
Confidence 334 778899999999885 33332 23346788999999998 567766432 356899999999996
Q ss_pred CccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744 544 RVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 544 ~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp 606 (679)
+++.+++ .+..+++|++|++++|+ +..++ +..+++|++|++.++|
T Consensus 306 ~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~---------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 306 HLLHVER--NQPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred cceecCc--cccccCcCCEEECCCCc-cceeC---------------chhhccCCEEEcCCCC
Confidence 6777754 35789999999999884 55442 3478999999999875
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.1e-26 Score=256.52 Aligned_cols=135 Identities=20% Similarity=0.207 Sum_probs=114.7
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 274 (679)
.+..++.+|...++++++|++++|.+..++. .+ .+++|++|++++|.+.+..| +.|.++++|++|++++|.++.+|.
T Consensus 39 s~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 39 SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccCc
Confidence 3455667777667899999999999988875 44 89999999999999885444 446999999999999999999998
Q ss_pred cccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCCccchhhhcCCCC--CEEcccCCc
Q 005744 275 SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCS 336 (679)
Q Consensus 275 ~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~ 336 (679)
. .+++|++|++++|.+.. |..++++++|++|++++|.++.. .+..+++| ++|++++|.
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence 7 89999999999999887 37899999999999999998863 46666776 999998853
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.5e-26 Score=246.97 Aligned_cols=224 Identities=13% Similarity=0.070 Sum_probs=108.9
Q ss_pred cCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCc-------------cEEEeCCCcCCcCCc
Q 005744 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTEL-------------RVLDLTGFRFHSLPS 274 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~l~~lp~ 274 (679)
...++.+++++|.++.+|..+ .+++|++|++++|.+.+.+|..+ +++++| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 356777777777777777666 67777777777777776777654 555543 777777777766665
Q ss_pred cccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCc
Q 005744 275 SLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (679)
Q Consensus 275 ~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~ 353 (679)
. .++|++|++++|.+.. |.. +.+|++|++++|.++.+|.. .++|++|++++ +.++.+| + ++++++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~-n~l~~lp-~-~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLP-E-LQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCC-C-CTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC-CCCCCCc-c-cCCCCCCC
Confidence 2 2566777777766666 432 25566666666666655431 14566666666 3455555 2 56666666
Q ss_pred EEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCC
Q 005744 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLN 433 (679)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~ 433 (679)
+|++++|.+... + . ...+|+.|++++|.+..+|....+++|+.|++..+..........+++.|+++++
T Consensus 157 ~L~l~~N~l~~l-p----~------~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 157 IIDVDNNSLKKL-P----D------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp EEECCSSCCSCC-C----C------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred EEECCCCcCccc-C----C------CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 666666654321 0 0 0125555555555555554322455555555544433222122235555555555
Q ss_pred CcceechhHHHHhhccccccccccc
Q 005744 434 NSTYLGYGMKMLLKRTEDLHLDELA 458 (679)
Q Consensus 434 ~~~~~~~~~~~~l~~L~~L~l~~~~ 458 (679)
....+|. +.. +++|+.|++++|.
T Consensus 226 ~l~~lp~-~~~-l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 226 ILEELPE-LQN-LPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCCC-CTT-CTTCCEEECCSSC
T ss_pred cCCcccc-cCC-CCCCCEEECCCCc
Confidence 4444442 222 4555555555543
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.4e-25 Score=232.14 Aligned_cols=287 Identities=17% Similarity=0.247 Sum_probs=218.9
Q ss_pred hhhhhh-hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCC
Q 005744 201 LKEELD-KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (679)
Q Consensus 201 ~~~~~~-~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l 279 (679)
+..++. ...+++++|++++|.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+|. +..+
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCchh-hccC
Confidence 344444 668899999999999998888559999999999999876 4543 6899999999999999999877 8999
Q ss_pred cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEcc
Q 005744 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (679)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (679)
++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|++|++++ +.+..++. +..+++|+.|+++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFTAY 207 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGG--GGGCTTCCEEECC
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-Cccccccc--ccCCCccceeecc
Confidence 999999999996655 7779999999999999999998886 89999999999999 56777776 7899999999999
Q ss_pred CCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCccee
Q 005744 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (679)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~ 438 (679)
+|.+.. ...+..+++|+.|++++|.+..++.. ..
T Consensus 208 ~n~l~~---------~~~~~~~~~L~~L~l~~n~l~~~~~~--------------------~~----------------- 241 (347)
T 4fmz_A 208 VNQITD---------ITPVANMTRLNSLKIGNNKITDLSPL--------------------AN----------------- 241 (347)
T ss_dssp SSCCCC---------CGGGGGCTTCCEEECCSSCCCCCGGG--------------------TT-----------------
T ss_pred cCCCCC---------CchhhcCCcCCEEEccCCccCCCcch--------------------hc-----------------
Confidence 997642 22378899999999999877654331 11
Q ss_pred chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccc
Q 005744 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC 518 (679)
Q Consensus 439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 518 (679)
+++|+.|++++|.. ..++ .+ ..+++|++|++++|. +..+ .....+++|++|++++| .+....
T Consensus 242 -------l~~L~~L~l~~n~l-~~~~-~~---~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~ 303 (347)
T 4fmz_A 242 -------LSQLTWLEIGTNQI-SDIN-AV---KDLTKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNN-QLGNED 303 (347)
T ss_dssp -------CTTCCEEECCSSCC-CCCG-GG---TTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCGGG
T ss_pred -------CCCCCEEECCCCcc-CCCh-hH---hcCCCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCC-cCCCcC
Confidence 34555555555432 2222 23 567777777777774 2222 23456778888888874 444433
Q ss_pred cCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccc
Q 005744 519 DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (679)
Q Consensus 519 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (679)
... .+.+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 304 ~~~------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 MEV------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp HHH------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred hhH------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 222 3467889999998864 777654 5678899999998874
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-25 Score=249.05 Aligned_cols=305 Identities=14% Similarity=0.177 Sum_probs=214.1
Q ss_pred cCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCc
Q 005744 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (679)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (679)
+.+++++.++++++.+. .+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.+.. +..++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 35677888888877765 677777788888888888888888764 478888888888888888877 45678888888
Q ss_pred EEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCc
Q 005744 306 ILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (679)
Q Consensus 306 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 384 (679)
+|++++|.++.+|.. ++++++|++|++++ +.+..+++..++.+++|++|++++|.+... .+..+++|+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~l~~L~ 195 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPSLF 195 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------CGGGCTTCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCc----------Chhhhhhhh
Confidence 888888888888876 47888888888888 466777766688888888888888866421 245677788
Q ss_pred eEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccc
Q 005744 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (679)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 464 (679)
.|++++|.+..++ .+..++.|+++++....++..+ .++|+.|++++|.... +
T Consensus 196 ~L~l~~n~l~~l~-----------------------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~ 247 (597)
T 3oja_B 196 HANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--T 247 (597)
T ss_dssp EEECCSSCCSEEE-----------------------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--C
T ss_pred hhhcccCcccccc-----------------------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--C
Confidence 8888877654322 1234555555555544444332 3567777777775432 2
Q ss_pred ccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCC
Q 005744 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (679)
Q Consensus 465 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 544 (679)
..+ ..+++|++|++++|... .+. ...+..+++|++|++++ +.+..++.. ...+++|+.|++++| .
T Consensus 248 ~~l---~~l~~L~~L~Ls~N~l~-~~~--~~~~~~l~~L~~L~Ls~-N~l~~l~~~-------~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 248 AWL---LNYPGLVEVDLSYNELE-KIM--YHPFVKMQRLERLYISN-NRLVALNLY-------GQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp GGG---GGCTTCSEEECCSSCCC-EEE--SGGGTTCSSCCEEECTT-SCCCEEECS-------SSCCTTCCEEECCSS-C
T ss_pred hhh---ccCCCCCEEECCCCccC-CCC--HHHhcCccCCCEEECCC-CCCCCCCcc-------cccCCCCcEEECCCC-C
Confidence 334 67788888888887533 322 12345778888888887 566665432 346788888888885 5
Q ss_pred ccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp 606 (679)
++.+|+ .+..+++|+.|++++|. +..++ +..+++|+.|+++++|
T Consensus 313 l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~---------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVER--NQPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred CCccCc--ccccCCCCCEEECCCCC-CCCcC---------------hhhcCCCCEEEeeCCC
Confidence 667643 35778888888888874 44432 3478888888888865
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=5.2e-25 Score=238.28 Aligned_cols=259 Identities=19% Similarity=0.156 Sum_probs=144.1
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
+.++.+++.+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34555566666666543 2466667777666653 3333346677777777777766655 5666677777777777776
Q ss_pred cCC-c-ccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744 292 VVD-V-AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (679)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (679)
+.. + ..++++++|++|++++|.++.+ |..+.++++|++|++++ +.+..+++..++.+++|++|++++|.+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 166 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS---- 166 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcc----
Confidence 666 3 3456677777777777766654 34566677777777766 45555555556667777777777665532
Q ss_pred CCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCccc----CCCCCCCcceEEecCCCcceechhH
Q 005744 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS----WSDGYETSKTLKLQLNNSTYLGYGM 442 (679)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~L~~~~~~~~~~~~ 442 (679)
.....+.++++|+.|++++|.+..++... .+++|+.|++..+.... ......+|+.|+++++....+|...
T Consensus 167 ---~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 167 ---IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp ---CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred ---cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 12234566667777777766665554432 44555555554432111 1111224455555554444444332
Q ss_pred HHHhhcccccccccccCcccccccccchhhccccceEeeecC
Q 005744 443 KMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG 484 (679)
Q Consensus 443 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 484 (679)
...+++|+.|++++|......+..+ ..+++|++|++++|
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n 282 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGG 282 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSC---TTCTTCCEEECCSS
T ss_pred hcCccccCeeECCCCcCCccChhhc---cccccCCEEECCCC
Confidence 2224455555555544332222233 44555555555544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-25 Score=236.34 Aligned_cols=302 Identities=18% Similarity=0.163 Sum_probs=242.2
Q ss_pred hcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCE
Q 005744 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT 284 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~ 284 (679)
...++++++++++.+..+|... .+++|++|++++|.+. .++...|..+++|++|++++|.++.+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688999999999999999865 7999999999999987 455555699999999999999999874 56899999999
Q ss_pred EEcCCcccCC-ccc-ccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744 285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (679)
Q Consensus 285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 361 (679)
|++++|.+.. |.. ++++++|++|++++|.++.++. .++++++|++|++++ +.++.++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence 9999999998 554 6999999999999999998755 589999999999999 5677764 5678999999999987
Q ss_pred ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechh
Q 005744 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (679)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~ 441 (679)
+.. +....+|+.|++++|.+..++... .++|+.|+++++..... .+
T Consensus 198 l~~------------~~~~~~L~~L~l~~n~l~~~~~~~---------------------~~~L~~L~l~~n~l~~~-~~ 243 (390)
T 3o6n_A 198 LST------------LAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLTDT-AW 243 (390)
T ss_dssp CSE------------EECCSSCSEEECCSSCCCEEECCC---------------------CSSCCEEECCSSCCCCC-GG
T ss_pred ccc------------cCCCCcceEEECCCCeeeeccccc---------------------cccccEEECCCCCCccc-HH
Confidence 642 334568999999998877654332 24556666666554443 34
Q ss_pred HHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCc
Q 005744 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (679)
Q Consensus 442 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 521 (679)
+.. +++|+.|++++|......|..+ ..+++|++|++++|. +..++. ....+|+|++|+++++ .++.++..
T Consensus 244 l~~-l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~- 313 (390)
T 3o6n_A 244 LLN-YPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLHVERN- 313 (390)
T ss_dssp GGG-CTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECCSSC-CCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG-
T ss_pred HcC-CCCccEEECCCCcCCCcChhHc---cccccCCEEECCCCc-CcccCc---ccCCCCCCCEEECCCC-cceecCcc-
Confidence 444 7899999999997766667777 789999999999985 555543 2357899999999994 77766533
Q ss_pred ccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccc
Q 005744 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (679)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (679)
...+++|+.|++++| .++.++ +..+++|++|++++++
T Consensus 314 ------~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 ------QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ------HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred ------ccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 457899999999995 577773 3568999999999875
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=8.4e-25 Score=245.85 Aligned_cols=424 Identities=17% Similarity=0.127 Sum_probs=255.7
Q ss_pred EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCccc
Q 005744 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLV 292 (679)
Q Consensus 214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~ 292 (679)
+.+-++..+..+|..+ -+++++|++++|.+. .+|+..|.++++|++|+|++|.++.+| ..|.++++|++|+|++|++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 4455556678888754 247999999999987 677666799999999999999999985 4699999999999999999
Q ss_pred CC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccC-cccccCCCCCcEEEccCCcccceecc
Q 005744 293 VD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVEG 368 (679)
Q Consensus 293 ~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (679)
.. | ..|+++++|++|++++|+++.+|.. ++++++|++|++++ +.++.++ +..++.+++|++|++++|.+.....
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 190 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 190 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccccccc-
Confidence 88 4 5789999999999999999999874 89999999999999 5565542 3347899999999999998764332
Q ss_pred CCcCChhhhhcCCC-CceEEeecCCCccCCccc--------------------------cccccceeEEEeCCc------
Q 005744 369 QSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL--------------------------VFVELERFRICIGDV------ 415 (679)
Q Consensus 369 ~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~~------ 415 (679)
..+..+.+++. +..++++.|.+..++... .+..++...+.....
T Consensus 191 ---~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 191 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ---GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ---ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 23344444432 234555555544333221 112222222211100
Q ss_pred -------------------------------ccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccc
Q 005744 416 -------------------------------WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (679)
Q Consensus 416 -------------------------------~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 464 (679)
...+.....+..+.+..+.....+.. . ....++.|++.++......+
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-S-YNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-G-SCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc-c-cchhhhhhhcccccccCcCc
Confidence 00111222334444443332222211 1 13567777777765322111
Q ss_pred ccc----------------cchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCc
Q 005744 465 HEL----------------DDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528 (679)
Q Consensus 465 ~~~----------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 528 (679)
..+ .....+++|+.|+++++.... ...........++|+.|++..+. ....+ ...
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~~~~~~-~~~~~-------~~~ 416 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCSQSDFGTISLKYLDLSFNG-VITMS-------SNF 416 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE-EEECCHHHHSCSCCCEEECCSCS-EEEEC-------SCC
T ss_pred ccchhhhhcccccccCCCCcccccccccccchhhcccccc-ccccccchhhhhhhhhhhccccc-ccccc-------ccc
Confidence 110 000123444444444443211 11111111233444444444421 11111 113
Q ss_pred cccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCc
Q 005744 529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQL 608 (679)
Q Consensus 529 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L 608 (679)
..+++|+.+++..+...... +...+..+++|+.++++++. +..+... .+..+++|+.|+++++..+
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~-l~~~~~~------------~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTH-TRVAFNG------------IFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp TTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSC-CEECCTT------------TTTTCTTCCEEECTTCEEG
T ss_pred cccccccchhhhhccccccc-cccccccccccccccccccc-ccccccc------------ccccchhhhhhhhhhcccc
Confidence 35566666666664433322 22334566677777776652 3322211 3557899999999998766
Q ss_pred cccccCCCCCcccCCCCCccccCCCCCCCccCc-cccccCCCcceeeccccccccccCCCccccccc
Q 005744 609 TSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLF-NERVVFPSLKKLKLSSINVEKIWLNSFSAIESW 674 (679)
Q Consensus 609 ~~l~~~~~~p~l~~~~~l~~~~~~~~~~l~~~~-~~~~~~p~L~~L~l~~~~l~~l~~~~~~~~~~~ 674 (679)
..+.... +..+++++.+....+. +..++ .....+++|+.|+|++|+++.++...|...++.
T Consensus 483 ~~~~~~~----~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 483 ENFLPDI----FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp GGEECSC----CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccCchh----hhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 6544332 3456677788877764 44443 335578999999999999999998877654443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=7.1e-25 Score=234.21 Aligned_cols=353 Identities=16% Similarity=0.117 Sum_probs=234.9
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEe
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (679)
.+++|++|++++|.+.+ +| . +..+++|++|++++|.++.+| ++.+++|++|++++|.+...+ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 68999999999999874 56 3 589999999999999999986 899999999999999998853 899999999999
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (679)
++|.++.+| ++.+++|++|++++ +.++.++ ++.+++|++|++++|..... + .+..+++|+.|+++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~--------~-~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK--------L-DVTPQTQLTTLDCS 178 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC--------C-CCTTCTTCCEEECC
T ss_pred CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcccc--------c-ccccCCcCCEEECC
Confidence 999999986 89999999999999 5677774 78999999999999854321 1 46788999999999
Q ss_pred cCCCccCCccccccccceeEEEeCCccc-CCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccccccc
Q 005744 390 IPDAQVMPQDLVFVELERFRICIGDVWS-WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD 468 (679)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (679)
+|.+..++ ...+++|+.|++..+.... .+..+++|+.|+++++....+| +.. +++|+.|++++|... .+| +
T Consensus 179 ~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~-l~~L~~L~l~~N~l~-~~~--~- 250 (457)
T 3bz5_A 179 FNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTP-LTQLTYFDCSVNPLT-ELD--V- 250 (457)
T ss_dssp SSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCS-CCC--C-
T ss_pred CCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccc-cCCCCEEEeeCCcCC-CcC--H-
Confidence 99988765 2256667777665444322 2333444444444444433333 111 344444444444321 111 1
Q ss_pred chhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccc
Q 005744 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHL 548 (679)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 548 (679)
+.+++|+.|++++ .+|+.|++++|..+..++ .+.+++|+.|++++|+.+..+
T Consensus 251 --~~l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 251 --STLSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQ---------AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp --TTCTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEE---------CTTCTTCCCCCCTTCTTCCEE
T ss_pred --HHCCCCCEEeccC-----------------CCCCEEECCCCccCCccc---------ccccccCCEEECCCCccccee
Confidence 2334444443322 235556666655444433 357799999999999888777
Q ss_pred ccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccccccCCCCCcccCCCCCcc
Q 005744 549 FPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGI 628 (679)
Q Consensus 549 ~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l~~~~~~p~l~~~~~l~~ 628 (679)
+. ..++|+.|++++|++|+.+......... ..+..+++|+.|++++ +++..++. +..+..
T Consensus 303 ~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~-----l~l~~l~~L~~L~l~~-N~l~~l~~------L~~L~l--- 362 (457)
T 3bz5_A 303 DC-----QAAGITELDLSQNPKLVYLYLNNTELTE-----LDVSHNTKLKSLSCVN-AHIQDFSS------VGKIPA--- 362 (457)
T ss_dssp EC-----TTCCCSCCCCTTCTTCCEEECTTCCCSC-----CCCTTCTTCSEEECCS-SCCCBCTT------GGGSSG---
T ss_pred cc-----CCCcceEechhhcccCCEEECCCCcccc-----cccccCCcCcEEECCC-CCCCCccc------cccccc---
Confidence 42 3466777777777766655432211111 1356888999999887 45665422 111110
Q ss_pred ccCCCCCCCccCccccccCCCcceeeccccccc-cccCCC
Q 005744 629 IAEGDPKDFTSLFNERVVFPSLKKLKLSSINVE-KIWLNS 667 (679)
Q Consensus 629 ~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~l~-~l~~~~ 667 (679)
. . ..+ .+...+.+|+.+++++|+++ .||.+.
T Consensus 363 ~-~---n~l----~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 363 L-N---NNF----EAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp G-G---TSE----EEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred c-C---CcE----EecceeeecCccccccCcEEEEcChhH
Confidence 0 0 001 11123467788899999876 566543
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.4e-25 Score=236.28 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=237.5
Q ss_pred eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecC
Q 005744 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (679)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (679)
+.++.+++.+. .+|..+ .+++++|++++|.++.+ |..|.++++|++|++++|.+.. |..|+++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45667666665 677654 46899999999999987 5789999999999999999887 67899999999999999
Q ss_pred CCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeec
Q 005744 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (679)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 390 (679)
|.++.+|.. +.++++|++|++++ +.+..+++..+.++++|++|++++|.+.... ...+..+++|+.|++++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-------HRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEEC-------TTSSTTCTTCCEEEEES
T ss_pred CcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeC-------hhhccCCCCCCEEECCC
Confidence 999999875 68999999999999 5677776666899999999999998775322 24567888999999999
Q ss_pred CCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcccccccccch
Q 005744 391 PDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE 470 (679)
Q Consensus 391 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 470 (679)
|.+..++... +..+++|+.|+++.+.....+......+++|+.|++++|.....++...
T Consensus 162 n~l~~~~~~~------------------l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--- 220 (477)
T 2id5_A 162 CNLTSIPTEA------------------LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--- 220 (477)
T ss_dssp CCCSSCCHHH------------------HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT---
T ss_pred CcCcccChhH------------------hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc---
Confidence 8877665432 2334556666666666555554333346889999999988877777665
Q ss_pred hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccccc
Q 005744 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP 550 (679)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 550 (679)
....+|++|++++|. +..++. ..+..+++|++|++++ +.++.++... ...+++|+.|+++++ +++.+.+
T Consensus 221 ~~~~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~Ls~-n~l~~~~~~~------~~~l~~L~~L~L~~n-~l~~~~~ 289 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LTAVPY--LAVRHLVYLRFLNLSY-NPISTIEGSM------LHELLRLQEIQLVGG-QLAVVEP 289 (477)
T ss_dssp TTTCCCSEEEEESSC-CCSCCH--HHHTTCTTCCEEECCS-SCCCEECTTS------CTTCTTCCEEECCSS-CCSEECT
T ss_pred ccCccccEEECcCCc-ccccCH--HHhcCccccCeeECCC-CcCCccChhh------ccccccCCEEECCCC-ccceECH
Confidence 445689999999885 332211 1235788999999998 5677665443 347889999999884 6777744
Q ss_pred HHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCC
Q 005744 551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (679)
Q Consensus 551 ~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp 606 (679)
..+..+++|++|++++| .++.++.. .+..+++|++|++.++|
T Consensus 290 -~~~~~l~~L~~L~L~~N-~l~~~~~~------------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 290 -YAFRGLNYLRVLNVSGN-QLTTLEES------------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TTBTTCTTCCEEECCSS-CCSCCCGG------------GBSCGGGCCEEECCSSC
T ss_pred -HHhcCcccCCEEECCCC-cCceeCHh------------HcCCCcccCEEEccCCC
Confidence 34577899999999988 66666532 45678899999998865
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7e-25 Score=243.49 Aligned_cols=302 Identities=18% Similarity=0.162 Sum_probs=240.8
Q ss_pred hcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCE
Q 005744 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT 284 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~ 284 (679)
...+++.++++++.+..+|... .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+| ..++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3578999999999999999865 79999999999999874 44445699999999999999999885 45799999999
Q ss_pred EEcCCcccCC-ccc-ccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744 285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (679)
Q Consensus 285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 361 (679)
|++++|.+.. |.. ++++++|++|++++|.++.+|. .++++++|++|++++ +.++.++ ++.+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999998 544 6999999999999999997765 589999999999999 5677775 5678999999999987
Q ss_pred ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechh
Q 005744 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (679)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~ 441 (679)
+. .+....+|+.|++++|.+..++... ..+|+.|.|+++.... +.+
T Consensus 204 l~------------~l~~~~~L~~L~ls~n~l~~~~~~~---------------------~~~L~~L~L~~n~l~~-~~~ 249 (597)
T 3oja_B 204 LS------------TLAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLTD-TAW 249 (597)
T ss_dssp CS------------EEECCTTCSEEECCSSCCCEEECSC---------------------CSCCCEEECCSSCCCC-CGG
T ss_pred cc------------cccCCchhheeeccCCccccccccc---------------------CCCCCEEECCCCCCCC-Chh
Confidence 64 2344568999999999877655432 1345556666554443 244
Q ss_pred HHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCc
Q 005744 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (679)
Q Consensus 442 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 521 (679)
+.. +++|+.|++++|......|..+ ..+++|++|++++|. +..++. ....+|+|++|++++ +.+..++..
T Consensus 250 l~~-l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~Ls~-N~l~~i~~~- 319 (597)
T 3oja_B 250 LLN-YPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSH-NHLLHVERN- 319 (597)
T ss_dssp GGG-CTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTSC-CCEEEC---SSSCCTTCCEEECCS-SCCCCCGGG-
T ss_pred hcc-CCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCCC-CCCCCc---ccccCCCCcEEECCC-CCCCccCcc-
Confidence 444 7899999999988766667777 789999999999985 555543 235689999999999 567666533
Q ss_pred ccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccc
Q 005744 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (679)
Q Consensus 522 ~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (679)
.+.+++|+.|++++| .++.++ +..+++|+.|++++|+
T Consensus 320 ------~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 ------QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred ------cccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 457899999999995 577763 3567899999999875
No 40
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=4.1e-26 Score=249.43 Aligned_cols=174 Identities=14% Similarity=0.127 Sum_probs=132.9
Q ss_pred CCCceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCcc
Q 005744 6 YSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI 85 (679)
Q Consensus 6 ~~~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~~ 85 (679)
...+|+|++|+++|||+||+++||+...++++++++++|+++|+|+||||+++|+.|+.++ |+.+ +.+.+... +.
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~-~~ 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE-SR 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH-HH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh-cc
Confidence 4468999999999999999999996655678899999999999999999999999998775 4333 33322110 00
Q ss_pred cccccccceeeeccccCChhhHHHHHH-----------hccccCCCCcccHHhHHHHHhhc--ccccccchHHHHHHHHH
Q 005744 86 QGMDADLSSIELSYEFLKCKEVKSLFQ-----------LCGLLKDGSRIAVDDLLRYVMGL--RLLTNADTLEAARNRVH 152 (679)
Q Consensus 86 ~~~~~~~~~l~~SY~~L~~~~lk~cfl-----------~~~~fp~~~~~~~~~li~~wiae--g~i~~~~~~~~~~~~~~ 152 (679)
......+++.+||++||.+ +|.||+ |||+||+|+.|+ +++|+|+ ||+++.......++.+.
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 1223488999999999998 999999 999999999999 8999999 99975431112344444
Q ss_pred HHHHHHHhccccccCC--CCCceEehhhHHHHHHHHHhccc
Q 005744 153 TLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEKL 191 (679)
Q Consensus 153 ~l~~~L~~~~~~~~~~--~~~~~~mhdli~~l~~~~~~~e~ 191 (679)
++++|+++|+++..+ +..+|+|||++|++|+.++.+++
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 899999999998643 45679999999999998877654
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3.3e-23 Score=221.10 Aligned_cols=300 Identities=17% Similarity=0.119 Sum_probs=199.0
Q ss_pred CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~ 289 (679)
.++++++++++.+..+|.. .++|++|++++|.+.+ +|. .+++|++|++++|.++.+|... ++|++|++++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~ 140 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSN 140 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCS
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcC
Confidence 3567777777777777662 4677777777777764 553 2467777777777777665422 5777778877
Q ss_pred cccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (679)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~ 369 (679)
|.+...+.++++++|++|++++|+++.+|..+ .+|++|++++ +.++.+| + ++++++|++|++++|.+....
T Consensus 141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~--- 211 (454)
T 1jl5_A 141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELP-E-LQNLPFLTAIYADNNSLKKLP--- 211 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCC-C-CTTCTTCCEEECCSSCCSSCC---
T ss_pred CCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCc-c-ccCCCCCCEEECCCCcCCcCC---
Confidence 77777325777777888888777777776543 4777777777 4566666 3 677777778777777654211
Q ss_pred CcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcc
Q 005744 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRT 449 (679)
Q Consensus 370 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L 449 (679)
. ...+|+.|++++|.+..+|....+++|+.|++..+........+++++.|+++++....+|.. +++|
T Consensus 212 --~------~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~----~~~L 279 (454)
T 1jl5_A 212 --D------LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL----PQSL 279 (454)
T ss_dssp --C------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC----CTTC
T ss_pred --C------CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc----cCcC
Confidence 0 113677777777777766653366777777776555433223346778888877766665543 3678
Q ss_pred cccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccc-cccceeeccccccccccccCcccCCCCc
Q 005744 450 EDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF-PLLESLFLHNLINLEKVCDGKVRLNEDD 528 (679)
Q Consensus 450 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 528 (679)
+.|++++|.. ..++. ..++|++|++++|. +..++ .+ ++|++|++++ ++++.++
T Consensus 280 ~~L~ls~N~l-~~l~~------~~~~L~~L~l~~N~-l~~i~-------~~~~~L~~L~Ls~-N~l~~lp---------- 333 (454)
T 1jl5_A 280 TFLDVSENIF-SGLSE------LPPNLYYLNASSNE-IRSLC-------DLPPSLEELNVSN-NKLIELP---------- 333 (454)
T ss_dssp CEEECCSSCC-SEESC------CCTTCCEEECCSSC-CSEEC-------CCCTTCCEEECCS-SCCSCCC----------
T ss_pred CEEECcCCcc-CcccC------cCCcCCEEECcCCc-CCccc-------CCcCcCCEEECCC-Ccccccc----------
Confidence 8888888753 33332 12678888888875 33332 23 4888888888 5666543
Q ss_pred cccCCccEEEEecCCCccccccHHHHHHhhcCcEEEEcccccchh
Q 005744 529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKL 573 (679)
Q Consensus 529 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 573 (679)
..+++|+.|++++| +++.+|. .+++|++|++++| .+..
T Consensus 334 ~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 334 ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSS
T ss_pred ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC-CCCc
Confidence 23578888888885 6777754 3678888888877 3443
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=9.2e-24 Score=216.89 Aligned_cols=154 Identities=19% Similarity=0.322 Sum_probs=109.3
Q ss_pred ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEe
Q 005744 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (679)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (679)
++++++++++.+. .+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.+.. |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777665 666644 35778888888887776 4567888888888888887776 567888888888888
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (679)
++|.++.+|..+. ++|++|++++ +.++.+|+..++++++|++|++++|.+... ......+..+ +|+.|+++
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----GFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----GSCTTSSCSC-CCSCCBCC
T ss_pred CCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-----CCCcccccCC-ccCEEECc
Confidence 8888888877655 7888888887 567777776677888888888888765311 0122334444 77777777
Q ss_pred cCCCccCCcc
Q 005744 390 IPDAQVMPQD 399 (679)
Q Consensus 390 ~~~~~~~~~~ 399 (679)
+|.+..+|..
T Consensus 181 ~n~l~~l~~~ 190 (332)
T 2ft3_A 181 EAKLTGIPKD 190 (332)
T ss_dssp SSBCSSCCSS
T ss_pred CCCCCccCcc
Confidence 7766655543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=5.4e-23 Score=211.01 Aligned_cols=154 Identities=20% Similarity=0.345 Sum_probs=96.7
Q ss_pred ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEe
Q 005744 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (679)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (679)
++++++++++.+. .+|..+ .++|++|++++|.++.+|. .++++++|++|++++|.+.. |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555565555544 455433 2466777777777766643 56677777777777776666 556777777777777
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (679)
++|.++.+|..+. ++|++|++++ +.++.+++..++++++|++|++++|.+... ......+..+++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred CCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCcc-----CcChhhccCCCCcCEEECC
Confidence 7777777666544 5777777776 456666665567777777777777655310 1223456667777777777
Q ss_pred cCCCccCCc
Q 005744 390 IPDAQVMPQ 398 (679)
Q Consensus 390 ~~~~~~~~~ 398 (679)
+|.+..+|.
T Consensus 180 ~n~l~~l~~ 188 (330)
T 1xku_A 180 DTNITTIPQ 188 (330)
T ss_dssp SSCCCSCCS
T ss_pred CCccccCCc
Confidence 766655443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2e-22 Score=206.90 Aligned_cols=292 Identities=15% Similarity=0.179 Sum_probs=191.8
Q ss_pred CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (679)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~ 289 (679)
+++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5788999999998888766 478999999999887 45444568999999999999999977 77899999999999999
Q ss_pred cccCC-cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
|.+.. |..+. ++|++|++++|.++.+|.. +.++++|++|++++ +.++. +++..++.+ +|++|++++|.+...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 99988 66665 8999999999999988864 88999999999999 45543 444447777 999999999977532
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHH
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML 445 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~ 445 (679)
. ..+ .++|+.|++++|.+..++.. .+..
T Consensus 188 ~--------~~~--~~~L~~L~l~~n~i~~~~~~------------------~l~~------------------------ 215 (332)
T 2ft3_A 188 P--------KDL--PETLNELHLDHNKIQAIELE------------------DLLR------------------------ 215 (332)
T ss_dssp C--------SSS--CSSCSCCBCCSSCCCCCCTT------------------SSTT------------------------
T ss_pred C--------ccc--cCCCCEEECCCCcCCccCHH------------------HhcC------------------------
Confidence 1 111 16888999988877654422 1111
Q ss_pred hhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCC
Q 005744 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLN 525 (679)
Q Consensus 446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 525 (679)
+++|+.|++++|......+..+ ..+++|++|++++|. +..++ .....+++|++|++++ +.++.++...+...
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~lp---~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSL---SFLPTLRELHLDNNK-LSRVP---AGLPDLKLLQVVYLHT-NNITKVGVNDFCPV 287 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGG---GGCTTCCEEECCSSC-CCBCC---TTGGGCTTCCEEECCS-SCCCBCCTTSSSCS
T ss_pred CCCCCEEECCCCcCCcCChhHh---hCCCCCCEEECCCCc-CeecC---hhhhcCccCCEEECCC-CCCCccChhHcccc
Confidence 3445555555544332222233 445555666655553 22221 1234555666666665 44555543332200
Q ss_pred CCccccCCccEEEEecCCCcc-ccccHHHHHHhhcCcEEEEcccc
Q 005744 526 EDDKSFSNLRIIKVEGCHRVK-HLFPFSLVKNLLQLQKVKVTDCT 569 (679)
Q Consensus 526 ~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~i~~c~ 569 (679)
.....++.|+.|++.+++-.. .+++ ..+..+++|+.+++++|.
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 001125667777777754221 2322 345667777777777664
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.1e-22 Score=202.66 Aligned_cols=237 Identities=17% Similarity=0.226 Sum_probs=159.2
Q ss_pred CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (679)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~ 289 (679)
+++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5788888888888888655 368899999998877 45555568899999999999998877 78889999999999999
Q ss_pred cccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccce
Q 005744 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
|.+.. |..+. ++|++|++++|.++.++. .+.++++|++|++++| .++. +.+..++++++|++|++++|.+...
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 98887 66554 789999999998887765 4788999999999884 4432 3444478889999999998876521
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHH
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML 445 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~ 445 (679)
. ..+ .++|+.|++++|.+..++.. .+..+++|+.|+++++.....+......
T Consensus 187 ~--------~~~--~~~L~~L~l~~n~l~~~~~~------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 187 P--------QGL--PPSLTELHLDGNKITKVDAA------------------SLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp C--------SSC--CTTCSEEECTTSCCCEECTG------------------GGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred C--------ccc--cccCCEEECCCCcCCccCHH------------------HhcCCCCCCEEECCCCcCceeChhhccC
Confidence 1 111 26788888888776544221 1122333444444444333332211112
Q ss_pred hhcccccccccccCcccccccccchhhccccceEeeecC
Q 005744 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG 484 (679)
Q Consensus 446 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 484 (679)
+++|+.|++++|.. ..+|..+ ..+++|++|++++|
T Consensus 239 l~~L~~L~L~~N~l-~~lp~~l---~~l~~L~~L~l~~N 273 (330)
T 1xku_A 239 TPHLRELHLNNNKL-VKVPGGL---ADHKYIQVVYLHNN 273 (330)
T ss_dssp STTCCEEECCSSCC-SSCCTTT---TTCSSCCEEECCSS
T ss_pred CCCCCEEECCCCcC-ccCChhh---ccCCCcCEEECCCC
Confidence 45555555555532 3444444 44555555555554
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=9.3e-23 Score=207.13 Aligned_cols=245 Identities=17% Similarity=0.175 Sum_probs=168.7
Q ss_pred CCCeEEEccCCCcc---cCCccc-CCcceeeeeecc-CCcccCCCchhhcCCCCccEEEeCCCcCC-cCCccccCCcCCC
Q 005744 210 EAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLR 283 (679)
Q Consensus 210 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~ 283 (679)
.++++|+++++.+. .+|..+ .+++|++|++++ |.+.+.+|..+ .++++|++|++++|.++ .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 56788888888875 466666 778888888884 77776777664 77888888888888877 6777788888888
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEecCCCCC-ccchhhhcCC-CCCEEcccCCcccc-ccCcccccCCCCCcEEEcc
Q 005744 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLT-CLKLLDLSNCSKLK-EIRPNVISNLTRLEELYMG 358 (679)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~lp~~~l~~l~~L~~L~l~ 358 (679)
+|++++|.+.. |..++++++|++|++++|.++ .+|..++.++ +|++|++++| .+. .+|.. ++.++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECc
Confidence 88888888774 677888888888888888777 7777788877 7888888874 444 44444 67776 8888888
Q ss_pred CCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCccee
Q 005744 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (679)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~ 438 (679)
+|.+.. .....+..+++|+.|++++|.+...+..
T Consensus 206 ~N~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------------- 239 (313)
T 1ogq_A 206 RNMLEG-------DASVLFGSDKNTQKIHLAKNSLAFDLGK--------------------------------------- 239 (313)
T ss_dssp SSEEEE-------CCGGGCCTTSCCSEEECCSSEECCBGGG---------------------------------------
T ss_pred CCcccC-------cCCHHHhcCCCCCEEECCCCceeeecCc---------------------------------------
Confidence 776542 2234556677777777776654322111
Q ss_pred chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccc
Q 005744 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (679)
Q Consensus 439 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 515 (679)
+. .+++|++|++++|.....+|..+ ..+++|++|++++|.....++ ....+++|+.|++.+.+.+.
T Consensus 240 ---~~-~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip----~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 240 ---VG-LSKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ---CC-CCTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECC----CSTTGGGSCGGGTCSSSEEE
T ss_pred ---cc-ccCCCCEEECcCCcccCcCChHH---hcCcCCCEEECcCCcccccCC----CCccccccChHHhcCCCCcc
Confidence 11 14567777777776655666666 667777888887775332332 22567777777777755443
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.9e-22 Score=204.92 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=191.3
Q ss_pred cceeeeeeccCCccc--CCCchhhcCCCCccEEEeCC-CcCC-cCCccccCCcCCCEEEcCCcccCC--cccccCCCCCc
Q 005744 232 LKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTG-FRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (679)
Q Consensus 232 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~l~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (679)
.+++.|+++++.+.+ .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999987 788765 8899999999995 7776 679999999999999999999974 78899999999
Q ss_pred EEEecCCCCC-ccchhhhcCCCCCEEcccCCcccc-ccCcccccCCC-CCcEEEccCCcccceeccCCcCChhhhhcCCC
Q 005744 306 ILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQLSR 382 (679)
Q Consensus 306 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 382 (679)
+|++++|.++ .+|..++.+++|++|++++| .++ .+|.. +++++ +|++|++++|.+.... +..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~-------~~~~~~l~- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-------PPTFANLN- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-------CGGGGGCC-
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeeccC-------ChHHhCCc-
Confidence 9999999888 78889999999999999994 555 67666 88887 9999999999775322 34556665
Q ss_pred CceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccc
Q 005744 383 LTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN 462 (679)
Q Consensus 383 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 462 (679)
|+.|++++|.+..... ..+. .+++|+.|++++|.....
T Consensus 199 L~~L~Ls~N~l~~~~~-----------------------------------------~~~~-~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDAS-----------------------------------------VLFG-SDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp CSEEECCSSEEEECCG-----------------------------------------GGCC-TTSCCSEEECCSSEECCB
T ss_pred ccEEECcCCcccCcCC-----------------------------------------HHHh-cCCCCCEEECCCCceeee
Confidence 8888888776542211 1111 156777777777765444
Q ss_pred ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeecccccccc-ccccCcccCCCCccccCCccEEEEec
Q 005744 463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE-KVCDGKVRLNEDDKSFSNLRIIKVEG 541 (679)
Q Consensus 463 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~~~~~~~~~~~~~~~l~~L~~L~l~~ 541 (679)
++. + ..+++|++|++++|.....+ ......+++|++|++++ +.++ .+|. .+.+++|+.|++.+
T Consensus 237 ~~~-~---~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~-N~l~~~ip~--------~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 237 LGK-V---GLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSF-NNLCGEIPQ--------GGNLQRFDVSAYAN 300 (313)
T ss_dssp GGG-C---CCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCS-SEEEEECCC--------STTGGGSCGGGTCS
T ss_pred cCc-c---cccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcC-CcccccCCC--------CccccccChHHhcC
Confidence 443 4 67899999999999743333 23457899999999999 4555 3332 35789999999999
Q ss_pred CCCcccc
Q 005744 542 CHRVKHL 548 (679)
Q Consensus 542 c~~L~~l 548 (679)
++.+...
T Consensus 301 N~~lc~~ 307 (313)
T 1ogq_A 301 NKCLCGS 307 (313)
T ss_dssp SSEEEST
T ss_pred CCCccCC
Confidence 7766654
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.1e-22 Score=202.88 Aligned_cols=220 Identities=18% Similarity=0.221 Sum_probs=115.7
Q ss_pred CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEe
Q 005744 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL 309 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 309 (679)
.++++.|++++|.+. .+|..+ .++++|++|++++|.++.+|..++++++|++|++++|.+.. |..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 455566666665554 455544 34566666666666655556556666666666666665555 555555666666666
Q ss_pred cCC-CCCccchhhhc---------CCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhc
Q 005744 310 KHS-SIEQLPREIGQ---------LTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379 (679)
Q Consensus 310 ~~~-~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 379 (679)
++| .+..+|..++. +++|++|++++ +.++.+|.. ++++++|++|++++|.+.. .+..+..
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~~L~L~~N~l~~--------l~~~l~~ 227 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPAS-IANLQNLKSLKIRNSPLSA--------LGPAIHH 227 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGG-GGGCTTCCEEEEESSCCCC--------CCGGGGG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHh-hcCCCCCCEEEccCCCCCc--------Cchhhcc
Confidence 554 33355544433 55555555555 344455444 5555555555555554431 1223445
Q ss_pred CCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccC
Q 005744 380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459 (679)
Q Consensus 380 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 459 (679)
+++|+.|++++|.... ..|.++.. +++|+.|++++|..
T Consensus 228 l~~L~~L~Ls~n~~~~-----------------------------------------~~p~~~~~-l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 228 LPKLEELDLRGCTALR-----------------------------------------NYPPIFGG-RAPLKRLILKDCSN 265 (328)
T ss_dssp CTTCCEEECTTCTTCC-----------------------------------------BCCCCTTC-CCCCCEEECTTCTT
T ss_pred CCCCCEEECcCCcchh-----------------------------------------hhHHHhcC-CCCCCEEECCCCCc
Confidence 5555555555443221 11222222 45566666666655
Q ss_pred cccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccc
Q 005744 460 FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN 510 (679)
Q Consensus 460 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 510 (679)
...+|..+ ..+++|++|++++|+....++. ....+++|+.+.+..
T Consensus 266 ~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~---~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 266 LLTLPLDI---HRLTQLEKLDLRGCVNLSRLPS---LIAQLPANCIILVPP 310 (328)
T ss_dssp CCBCCTTG---GGCTTCCEEECTTCTTCCCCCG---GGGGSCTTCEEECCG
T ss_pred hhhcchhh---hcCCCCCEEeCCCCCchhhccH---HHhhccCceEEeCCH
Confidence 55555555 5566666666666665554432 234556666665553
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=205.68 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=139.5
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
...+.+++.++.+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 346777777777776542 47888888887766 45554557788888888888887766 4567788888888888888
Q ss_pred cCC-ccc-ccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 292 VVD-VAI-IGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 292 ~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
+.. +.. ++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.+++..++++++|++|++++|.+...
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 189 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-- 189 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence 777 433 7778888888888888887776 5777888888888876567777666677788888888887766432
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCc
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDV 415 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 415 (679)
....+..+++|+.|++++|.+..++... .+++|+.|++..+..
T Consensus 190 -----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 190 -----EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp -----CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred -----CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 2345667778888888887776666544 467777777765543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=206.49 Aligned_cols=242 Identities=18% Similarity=0.245 Sum_probs=175.2
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~ 290 (679)
.+.++..+..+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4567777777888887553 678888888888764 44444688899999999999888774 67888899999999998
Q ss_pred ccCC-c-ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
.+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 8887 3 468888999999999998888776 57888899999998888888888877888899999999888764
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK 447 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~ 447 (679)
.+..+..+++|+.|++++|.+..++.. .+..+++|+.|.|+++.....+......++
T Consensus 199 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 199 -----EIPNLTPLIKLDELDLSGNHLSAIRPG------------------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp -----SCCCCTTCSSCCEEECTTSCCCEECTT------------------TTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred -----cccccCCCcccCEEECCCCccCccChh------------------hhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 223467788888888888877654322 223344455555555544444333222356
Q ss_pred cccccccccccCcccccccccchhhccccceEeeecCC
Q 005744 448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
+|+.|++++|......+..+ ..+++|+.|++++|+
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCC
Confidence 77777777765443333334 567777777777776
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=3.2e-21 Score=206.68 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=176.0
Q ss_pred CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (679)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~ 289 (679)
..+.++.++..+..+|..+ .+++++|++++|.+.+ ++...|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3466777777888888654 3688999999988875 4444458899999999999998876 46788899999999999
Q ss_pred cccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744 290 CLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (679)
Q Consensus 290 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (679)
|.+.. +..++.+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence 98887 3558889999999999999988876 578899999999999888888888778889999999999887642
Q ss_pred ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHh
Q 005744 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (679)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l 446 (679)
+..+..+++|+.|++++|.+..++.. .+..+++|+.|.++++.....+......+
T Consensus 211 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 211 -------MPNLTPLVGLEELEMSGNHFPEIRPG------------------SFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp -------CCCCTTCTTCCEEECTTSCCSEECGG------------------GGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred -------cccccccccccEEECcCCcCcccCcc------------------cccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 23467788888888888877655332 12333444455555544444432222235
Q ss_pred hcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 447 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
++|+.|++++|......+..+ ..+++|++|++++|+
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCC
Confidence 667777777765433223333 556777777777765
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=3.3e-21 Score=193.27 Aligned_cols=193 Identities=21% Similarity=0.316 Sum_probs=125.6
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCcC-
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL- 272 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l- 272 (679)
.+..+..+|...++++++|++++|.+..++.. + .+++|++|++++|.+.+..|. .|..+++|++|++++|. ++.+
T Consensus 19 ~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 19 PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCC
T ss_pred CcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccC
Confidence 33445555555566777777777777666543 2 667777777777766533333 34667777777777775 6665
Q ss_pred CccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCC
Q 005744 273 PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (679)
Q Consensus 273 p~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l 349 (679)
|..+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+++..+..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCc
Confidence 5567777777777777777666 45567777777777777777766654 66777777777777 45666666556677
Q ss_pred CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCc
Q 005744 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (679)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (679)
++|++|++++|.+... ....+..+++|+.|++++|.+..++.
T Consensus 177 ~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHV-------HPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cccCEEECCCCccccc-------CHhHccCcccccEeeCCCCcCCcCCH
Confidence 7777777777765432 12345566677777777776665543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3.1e-21 Score=195.69 Aligned_cols=242 Identities=20% Similarity=0.188 Sum_probs=143.5
Q ss_pred EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC---CccccCCcCCCEEEcCCc
Q 005744 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENC 290 (679)
Q Consensus 214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~L~~~ 290 (679)
.++.+++.+..+|..+ .+++++|++++|.+. .+|..+|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 5666666666666543 256777777777665 56666667777777777777776644 455666777777777777
Q ss_pred ccCC-cccccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 291 LVVD-VAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
.+.. +..+..+++|++|++++|.++.++. .+..+++|++|++++ +.+...++..++.+++|++|++++|.+...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCccccc--
Confidence 7766 6667777777777777777776653 566777777777777 345555544466777777777777755320
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK 447 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~ 447 (679)
.....+..+++|+.|++++|.+..++.. .+..+++|+.|+++++.....+......++
T Consensus 166 ----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 166 ----FLPDIFTELRNLTFLDLSQCQLEQLSPT------------------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp ----EECSCCTTCTTCCEEECTTSCCCEECTT------------------TTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred ----cchhHHhhCcCCCEEECCCCCcCCcCHH------------------HhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 0112445566777777776665543211 122233333444444333333221112245
Q ss_pred cccccccccccCcccccccccchhhcc-ccceEeeecCC
Q 005744 448 RTEDLHLDELAGFKNVVHELDDEEGFA-RLRHLHVHNGP 485 (679)
Q Consensus 448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 485 (679)
+|+.|++++|......+..+ ..++ +|++|++++|+
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~---~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQEL---QHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSC---CCCCTTCCEEECTTCC
T ss_pred cCCEeECCCCCCcccCHHHH---HhhhccCCEEEccCCC
Confidence 66666666665544444444 4443 66666666664
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.2e-21 Score=198.16 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=176.6
Q ss_pred hcCCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 286 (679)
...+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|..+ +.+++|++|++++|.++.+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3578999999999999999877 8999999999999988 888765 889999999999999999999999999999999
Q ss_pred cCCcccCC--cccccC---------CCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEE
Q 005744 287 LENCLVVD--VAIIGD---------LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (679)
Q Consensus 287 L~~~~~~~--~~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 355 (679)
+++|.+.. |..++. +++|++|++++|.++.+|..++++++|++|++++ +.+..+|+. ++.+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEE
Confidence 99987665 666554 9999999999999999999999999999999999 677888886 8999999999
Q ss_pred EccCCcccceeccCCcCChhhhhcCCCCceEEeecCCC-ccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCC
Q 005744 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA-QVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN 434 (679)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~ 434 (679)
++++|.+... .+..+..+++|+.|++++|.. ..+|..+ ..+++|+.|+|++|.
T Consensus 235 ~Ls~n~~~~~-------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-------------------~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 235 DLRGCTALRN-------YPPIFGGRAPLKRLILKDCSNLLTLPLDI-------------------HRLTQLEKLDLRGCV 288 (328)
T ss_dssp ECTTCTTCCB-------CCCCTTCCCCCCEEECTTCTTCCBCCTTG-------------------GGCTTCCEEECTTCT
T ss_pred ECcCCcchhh-------hHHHhcCCCCCCEEECCCCCchhhcchhh-------------------hcCCCCCEEeCCCCC
Confidence 9999876543 334677889999999998754 3444433 334455555555543
Q ss_pred -cceechhHHHHhhccccccccc
Q 005744 435 -STYLGYGMKMLLKRTEDLHLDE 456 (679)
Q Consensus 435 -~~~~~~~~~~~l~~L~~L~l~~ 456 (679)
...+|.++.. +++|+.+.+..
T Consensus 289 ~~~~iP~~l~~-L~~L~~l~l~~ 310 (328)
T 4fcg_A 289 NLSRLPSLIAQ-LPANCIILVPP 310 (328)
T ss_dssp TCCCCCGGGGG-SCTTCEEECCG
T ss_pred chhhccHHHhh-ccCceEEeCCH
Confidence 3345666665 56777776654
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1e-22 Score=226.71 Aligned_cols=351 Identities=13% Similarity=0.022 Sum_probs=183.7
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCC-ccEEEeCCCc-CC--cCCccccCCcCCCEEEcCCcccCC--c----cccc
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTE-LRVLDLTGFR-FH--SLPSSLGCLINLRTLSLENCLVVD--V----AIIG 299 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-l~--~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~ 299 (679)
.+++|++|++++|.+.+..+..+...++. |++|++++|. ++ .++..+.++++|++|++++|.+.+ . ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 46777777777776554333333222333 7777777765 22 233334467777777777776644 1 1344
Q ss_pred CCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCCh
Q 005744 300 DLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (679)
Q Consensus 300 ~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (679)
.+++|++|++++|.++ .++..+.++++|++|++++| .+..++.. ++++++|++|+++...... ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~ 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDI----GMPEKY 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCT----TCTTSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhccccccccc----chHHHH
Confidence 5677777777777665 34445567777777777773 44555543 6777777777776432110 011233
Q ss_pred hhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCcc-----cCCCCCCCcceEEecCCCcceechhHHHHhhc
Q 005744 375 GELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVW-----SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR 448 (679)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~ 448 (679)
..+..+++|+.|+++......++..+ .+++|+.|++..+... ..+..+++|+.|++..+-.......+...+++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 45556667777777665545555544 5667777777555421 12355666777766622111111222233566
Q ss_pred cccccccc----------ccCcccc--cccccchhhccccceEeeecCCCeeEEEeCCCcc-ccccccceeeccc---cc
Q 005744 449 TEDLHLDE----------LAGFKNV--VHELDDEEGFARLRHLHVHNGPEILHILNSDGRV-GTFPLLESLFLHN---LI 512 (679)
Q Consensus 449 L~~L~l~~----------~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~---c~ 512 (679)
|++|++.+ |..+... .... ..+++|++|++..+. +... ..... ..+++|++|++.+ |+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~-l~~~--~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSD-ITNE--SLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESC-CCHH--HHHHHHHHCCSCCEEEEEECSCCS
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCC-ccHH--HHHHHHhhCCCCcEEEEeecCCCc
Confidence 77777763 4333321 1111 446777777773332 2110 00011 2366677777763 34
Q ss_pred cccccccC-cccCCCCccccCCccEEEEecCCC-ccccccHHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccc
Q 005744 513 NLEKVCDG-KVRLNEDDKSFSNLRIIKVEGCHR-VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSIS 590 (679)
Q Consensus 513 ~L~~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~-L~~l~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~ 590 (679)
.++..+.. .++ .....+++|+.|++++|.. ++..........+++|++|++++|. +....... .
T Consensus 418 ~l~~~p~~~~~~--~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-----------~ 483 (592)
T 3ogk_B 418 RITDLPLDNGVR--SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME-----------F 483 (592)
T ss_dssp CCSSCCCHHHHH--HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH-----------H
T ss_pred cccCchHHHHHH--HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH-----------H
Confidence 44432110 000 0023466777777766553 3332122222336667777777663 32211000 1
Q ss_pred cccccccceeeccCCC
Q 005744 591 GVYFRKLHFLKLQHLP 606 (679)
Q Consensus 591 l~~l~~L~~L~l~~cp 606 (679)
+..+++|++|+|++|+
T Consensus 484 ~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HTCCTTCCEEEEESCC
T ss_pred HhcCcccCeeeccCCC
Confidence 2356677777777765
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=9.9e-21 Score=196.04 Aligned_cols=226 Identities=21% Similarity=0.216 Sum_probs=162.5
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (679)
.++...+.+++++.+. .+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.+.. +..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4555556778877776 788765 3589999999999998865 79999999999999999888 567999999999
Q ss_pred EEecCCCCCccchh-hhcCCCCCEEcccCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCc
Q 005744 307 LSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (679)
Q Consensus 307 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 384 (679)
|++++|.++.+|.. ++++++|++|++++ +.++.+|. ..++++++|++|++++|...... ....+..+++|+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~l~~L~ 177 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAGLTFLE 177 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCcccccc------CHHHccCCCCCC
Confidence 99999999999887 88999999999999 67888887 55889999999999998422111 224567788999
Q ss_pred eEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccc
Q 005744 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (679)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 464 (679)
.|++++|.+...... .+..+++|+.|+++++.....+......+++|+.|++++|......+
T Consensus 178 ~L~l~~n~l~~~~~~------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 178 ELEIDASDLQSYEPK------------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEETTCCEECTT------------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred EEECCCCCcCccCHH------------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 999998877654221 23344455556666665555565555556788888888776543332
Q ss_pred ccccchhhccccceEeeecC
Q 005744 465 HELDDEEGFARLRHLHVHNG 484 (679)
Q Consensus 465 ~~~~~~~~l~~L~~L~l~~~ 484 (679)
..+......+.++.++++++
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp C------CCCCCCEEEEESC
T ss_pred cccccccccchhhccccccc
Confidence 22211122344455554443
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=4.6e-23 Score=222.15 Aligned_cols=356 Identities=15% Similarity=0.104 Sum_probs=172.8
Q ss_pred CCCeEEEccCCCcccCCcc--c-CCcceeeeeeccCCcccC----CCchhhcCCCCccEEEeCCCcCCcC-Cccc-cCCc
Q 005744 210 EAPTAISIPFRGIYELPER--L-GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHSL-PSSL-GCLI 280 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i-~~l~ 280 (679)
+++++|+++++.+...+.. + .+++|++|++++|.+... ++. .+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4566677776666433211 2 566677777776665421 222 235566777777777666531 2111 2233
Q ss_pred ----CCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCcc-chhhh-----cCCCCCEEcccCCccccccC--
Q 005744 281 ----NLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQL-PREIG-----QLTCLKLLDLSNCSKLKEIR-- 342 (679)
Q Consensus 281 ----~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i~-----~L~~L~~L~l~~~~~l~~lp-- 342 (679)
+|++|++++|.+.. +..+.++++|++|++++|.++.. +..+. ..++|++|++++| .++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 57777777766652 45566666777777777665521 11121 2445777777664 333321
Q ss_pred --cccccCCCCCcEEEccCCcccceeccCCcCChhhhh-cCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCC
Q 005744 343 --PNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS 419 (679)
Q Consensus 343 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 419 (679)
...+..+++|++|++++|.+..... ......+. ..++|+.|++++|.+....... ....+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~--------------l~~~l 223 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGV---RVLCQGLKDSPCQLEALKLESCGVTSDNCRD--------------LCGIV 223 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHH---HHHHHHHHHSCCCCCEEECTTSCCBTTHHHH--------------HHHHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHH---HHHHHHHhcCCCCceEEEccCCCCcHHHHHH--------------HHHHH
Confidence 1124455667777766665431100 00001111 2446666666666554321000 00011
Q ss_pred CCCCCcceEEecCCCcceec-----hhHHHHhhcccccccccccCccc----ccccccchhhccccceEeeecCCCeeEE
Q 005744 420 DGYETSKTLKLQLNNSTYLG-----YGMKMLLKRTEDLHLDELAGFKN----VVHELDDEEGFARLRHLHVHNGPEILHI 490 (679)
Q Consensus 420 ~~~~~l~~L~L~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 490 (679)
..+++|+.|+++++...... ..+...+++|++|++++|..... ++..+ ..+++|++|++++|..-...
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL---RAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH---HHCTTCCEEECTTCCCHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH---hhCCCcceEECCCCCCchHH
Confidence 22344555555544322210 11111145677777776643322 33333 45677777777766411000
Q ss_pred EeCCC--ccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHH----hhcCcEEE
Q 005744 491 LNSDG--RVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKN----LLQLQKVK 564 (679)
Q Consensus 491 ~~~~~--~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~----l~~L~~L~ 564 (679)
..... .....++|++|++++|. ++......++ .....+++|++|++++| .+++..+...... .++|++|+
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~--~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS--SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH--HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH--HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEE
Confidence 00000 00122577777777743 4332111111 11234577777887775 4554422221122 45778888
Q ss_pred Ecccccch-----hhhccccccccCCCCccccccccccceeeccCC
Q 005744 565 VTDCTNLK-----LIVGKESENSAHKNGSISGVYFRKLHFLKLQHL 605 (679)
Q Consensus 565 i~~c~~L~-----~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c 605 (679)
+++| .+. .++. .+..+++|++|++++|
T Consensus 377 L~~n-~i~~~~~~~l~~-------------~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 377 LADC-DVSDSSCSSLAA-------------TLLANHSLRELDLSNN 408 (461)
T ss_dssp CTTS-CCCHHHHHHHHH-------------HHHHCCCCCEEECCSS
T ss_pred CCCC-CCChhhHHHHHH-------------HHHhCCCccEEECCCC
Confidence 8777 344 2322 3446777788877776
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=6.4e-20 Score=183.86 Aligned_cols=175 Identities=19% Similarity=0.285 Sum_probs=145.8
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~ 290 (679)
-+.++.+++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888898888654 578999999999887 45555568999999999999999877 778999999999999999
Q ss_pred c-cCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744 291 L-VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (679)
Q Consensus 291 ~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (679)
. +.. +..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.+++..++.+++|++|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 666 67899999999999999999877 45688999999999999 6788888777889999999999999775322
Q ss_pred ccCCcCChhhhhcCCCCceEEeecCCCccC
Q 005744 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (679)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 396 (679)
...+..+++|+.|++++|.+..+
T Consensus 170 -------~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 170 -------ERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCEE
T ss_pred -------HHHhcCccccCEEECCCCccccc
Confidence 13467788999999998877654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=4.6e-20 Score=187.02 Aligned_cols=261 Identities=16% Similarity=0.158 Sum_probs=197.9
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCccc--CCCchhhcCCCCccEEEeCCCcCCcC
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTGFRFHSL 272 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~l 272 (679)
.+..++.+|...++++++|++++|.+..+|... .+++|++|++++|.+.. ..+..+ ..+++|++|++++|.++.+
T Consensus 15 ~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp CSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE
T ss_pred CCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccC
Confidence 445566777766789999999999999998864 89999999999998762 224444 5799999999999999999
Q ss_pred CccccCCcCCCEEEcCCcccCC-c--ccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccc--cCcccc
Q 005744 273 PSSLGCLINLRTLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKE--IRPNVI 346 (679)
Q Consensus 273 p~~i~~l~~L~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--lp~~~l 346 (679)
|..+..+++|++|++++|.+.. + ..+.++++|++|++++|.+... |..+..+++|++|++++| .+.. +|.. +
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~ 171 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDI-F 171 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSC-C
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhH-H
Confidence 9999999999999999999988 4 5799999999999999998854 556889999999999995 5554 4544 8
Q ss_pred cCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCccc----CCC
Q 005744 347 SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS----WSD 420 (679)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~ 420 (679)
+.+++|++|++++|.+... ....+..+++|+.|++++|.+..++... .+++|+.|++..+.+.. .+.
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQL-------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp TTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred hhCcCCCEEECCCCCcCCc-------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 9999999999999987542 2346778899999999999998877643 67888888887665432 334
Q ss_pred CC-CCcceEEecCCCcceec--hhHHHHhhcccccccccccCcccccccc
Q 005744 421 GY-ETSKTLKLQLNNSTYLG--YGMKMLLKRTEDLHLDELAGFKNVVHEL 467 (679)
Q Consensus 421 ~~-~~l~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 467 (679)
.+ ++|+.|+++++...... .++...+...+.+.+..+...-..|..+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 44 47888888876654321 2333334455555444333333334333
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.7e-21 Score=217.01 Aligned_cols=130 Identities=20% Similarity=0.229 Sum_probs=71.6
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCC-cCCc--CCccccCCcCCCEEEcCCcccCC--cccc----cC
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHS--LPSSLGCLINLRTLSLENCLVVD--VAII----GD 300 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i----~~ 300 (679)
.+++|++|++++|.+.+..+..+...+++|++|++++| .++. ++..+.++++|++|++++|.+.+ +..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45666666666666554444444335666666666666 3432 44444456666677766666544 2222 24
Q ss_pred CCCCcEEEecCCC--CC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744 301 LKKLEILSLKHSS--IE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (679)
Q Consensus 301 L~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (679)
+++|++|++++|. +. .++..+..+++|++|++++|..++.++.. +.++++|++|+++.+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 5566666666664 22 22222344566666666666555554433 556666666665443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=195.68 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=172.7
Q ss_pred EecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL 272 (679)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 272 (679)
...+..+..+|.....+++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+
T Consensus 49 ~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 49 ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp ECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred EeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCee
Confidence 3455677778887788999999999999887643 3 8999999999999987 55656679999999999999999998
Q ss_pred Cc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCC-CCCccch-hhhcCCCCCEEcccCCccccccCccccc
Q 005744 273 PS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVIS 347 (679)
Q Consensus 273 p~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 347 (679)
|. .+..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|. .+.++++|++|++++ +.++.+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cC
Confidence 75 68999999999999999988 457999999999999995 7777776 588999999999999 67888885 88
Q ss_pred CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeC
Q 005744 348 NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIG 413 (679)
Q Consensus 348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 413 (679)
.+++|++|++++|.+.... ...+..+++|+.|++++|.+..++... .+++|+.|++..+
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIR-------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TCSSCCEEECTTSCCCEEC-------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CCcccCEEECCCCccCccC-------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 9999999999999876432 356788999999999999887665442 4555555555443
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.3e-19 Score=197.24 Aligned_cols=260 Identities=20% Similarity=0.151 Sum_probs=194.9
Q ss_pred cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcC
Q 005744 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~ 288 (679)
..+++.++++++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 3468899999999999988665 89999999999877 6775 57899999999999999987 67899999999
Q ss_pred CcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 289 NCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
+|.+.. |. .+.+|++|++++|+++.+|.. +++|++|++++ +.++.+|.. +.+|+.|++++|.+..
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~~----~~~L~~L~L~~N~l~~--- 175 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTS--- 175 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSC---
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCCc----cCCCCEEECCCCCCCC---
Confidence 999888 54 678899999999999999874 48899999998 577777652 4688899999987742
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhh
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLK 447 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~ 447 (679)
+. ..+++|+.|++++|.+..++.. +++| +.|.++++....+|.. ++
T Consensus 176 ------l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L--------------------~~L~L~~N~l~~l~~~----~~ 221 (622)
T 3g06_A 176 ------LP--MLPSGLQELSVSDNQLASLPTL--PSEL--------------------YKLWAYNNRLTSLPAL----PS 221 (622)
T ss_dssp ------CC--CCCTTCCEEECCSSCCSCCCCC--CTTC--------------------CEEECCSSCCSSCCCC----CT
T ss_pred ------Cc--ccCCCCcEEECCCCCCCCCCCc--cchh--------------------hEEECcCCcccccCCC----CC
Confidence 11 3467889999998888766543 2344 4444444444444432 46
Q ss_pred cccccccccccCcccccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCC
Q 005744 448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED 527 (679)
Q Consensus 448 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 527 (679)
+|+.|++++|.. +.+| ..+++|++|++++|. +..++. .+++|++|++++ ++++.+|..
T Consensus 222 ~L~~L~Ls~N~L-~~lp------~~l~~L~~L~Ls~N~-L~~lp~------~~~~L~~L~Ls~-N~L~~lp~~------- 279 (622)
T 3g06_A 222 GLKELIVSGNRL-TSLP------VLPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPES------- 279 (622)
T ss_dssp TCCEEECCSSCC-SCCC------CCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCS-SCCCSCCGG-------
T ss_pred CCCEEEccCCcc-CcCC------CCCCcCcEEECCCCC-CCcCCc------ccccCcEEeCCC-CCCCcCCHH-------
Confidence 788888888753 4444 245788999998884 443322 578899999988 577766532
Q ss_pred ccccCCccEEEEecCCCcccc
Q 005744 528 DKSFSNLRIIKVEGCHRVKHL 548 (679)
Q Consensus 528 ~~~l~~L~~L~l~~c~~L~~l 548 (679)
...+++|+.|+++++ .+...
T Consensus 280 l~~l~~L~~L~L~~N-~l~~~ 299 (622)
T 3g06_A 280 LIHLSSETTVNLEGN-PLSER 299 (622)
T ss_dssp GGGSCTTCEEECCSC-CCCHH
T ss_pred HhhccccCEEEecCC-CCCCc
Confidence 457899999999985 45544
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=8.5e-20 Score=195.63 Aligned_cols=209 Identities=20% Similarity=0.247 Sum_probs=171.8
Q ss_pred EecccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC
Q 005744 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL 272 (679)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 272 (679)
...+..+..+|...+.+++.|++++|.+..++.. + .+++|++|++++|.+.+ ++...|.++++|++|++++|.++.+
T Consensus 60 ~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 60 VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred EECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCcc
Confidence 3455667777777778999999999999877543 4 89999999999999874 4545569999999999999999988
Q ss_pred Ccc-ccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCC-CCCccch-hhhcCCCCCEEcccCCccccccCccccc
Q 005744 273 PSS-LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVIS 347 (679)
Q Consensus 273 p~~-i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 347 (679)
|.. +..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|. .+..+++|++|++++ +.++.+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cc
Confidence 654 8899999999999999988 457999999999999995 7888876 488999999999999 67888875 88
Q ss_pred CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCC
Q 005744 348 NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD 414 (679)
Q Consensus 348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 414 (679)
.+++|++|++++|.+... ....+..+++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 216 ~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEI-------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TCTTCCEEECTTSCCSEE-------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccccEEECcCCcCccc-------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 999999999999987643 2357888999999999999887665432 45555555554443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2e-21 Score=197.89 Aligned_cols=286 Identities=16% Similarity=0.107 Sum_probs=197.8
Q ss_pred CeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCC
Q 005744 212 PTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~ 289 (679)
+...+++.+.+...+... .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 344455555554333333 56788888888888764 454455888888888888888877665 88888888888888
Q ss_pred cccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC
Q 005744 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (679)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~ 369 (679)
|.+.... ..++|++|++++|.++.++. ..+++|++|++++ +.++.+++..++.+++|++|++++|.+....
T Consensus 90 n~l~~l~---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 160 (317)
T 3o53_A 90 NYVQELL---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--- 160 (317)
T ss_dssp SEEEEEE---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEEE---
T ss_pred Ccccccc---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCccc---
Confidence 8876621 33788888888888887764 3477888888888 5677777666788888888888888775432
Q ss_pred CcCChhhh-hcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhc
Q 005744 370 SNASLGEL-KQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR 448 (679)
Q Consensus 370 ~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~ 448 (679)
...+ ..+++|+.|++++|.+..++... .+++|+.|+++++....+|..+.. +++
T Consensus 161 ----~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~l~~~~~~-l~~ 215 (317)
T 3o53_A 161 ----FAELAASSDTLEHLNLQYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPEFQS-AAG 215 (317)
T ss_dssp ----GGGGGGGTTTCCEEECTTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGGGGG-GTT
T ss_pred ----HHHHhhccCcCCEEECCCCcCccccccc--------------------ccccCCEEECCCCcCCcchhhhcc-cCc
Confidence 2233 36788888888888776553332 245666667777766667666554 789
Q ss_pred ccccccccccCcccccccccchhhccccceEeeecCCCe-eEEEeCCCccccccccceeeccccccccccccCcccCCCC
Q 005744 449 TEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI-LHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED 527 (679)
Q Consensus 449 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 527 (679)
|+.|++++|.. ..+|..+ ..+++|++|++++|+.. ..+ ......+++|+.|++.+++.++.....
T Consensus 216 L~~L~L~~N~l-~~l~~~~---~~l~~L~~L~l~~N~~~~~~~---~~~~~~~~~L~~l~l~~~~~l~~~~~~------- 281 (317)
T 3o53_A 216 VTWISLRNNKL-VLIEKAL---RFSQNLEHFDLRGNGFHCGTL---RDFFSKNQRVQTVAKQTVKKLTGQNEE------- 281 (317)
T ss_dssp CSEEECTTSCC-CEECTTC---CCCTTCCEEECTTCCCBHHHH---HHHHHTCHHHHHHHHHHHHHHHSSSSC-------
T ss_pred ccEEECcCCcc-cchhhHh---hcCCCCCEEEccCCCccCcCH---HHHHhccccceEEECCCchhccCCchh-------
Confidence 99999999864 5677777 77899999999999743 111 123367889999999987777654322
Q ss_pred ccccCCccEEEEecCCCccc
Q 005744 528 DKSFSNLRIIKVEGCHRVKH 547 (679)
Q Consensus 528 ~~~l~~L~~L~l~~c~~L~~ 547 (679)
....+.+....-..|..+..
T Consensus 282 ~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 282 ECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp CCSSTTCEEETTEEEBCCTT
T ss_pred ccCCCceecccceeeccCCh
Confidence 22234444444445666654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=3.4e-19 Score=195.88 Aligned_cols=246 Identities=17% Similarity=0.081 Sum_probs=196.3
Q ss_pred ccchhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcccc
Q 005744 198 VADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG 277 (679)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~ 277 (679)
++.+..+|....++++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|.
T Consensus 49 ~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~--- 118 (622)
T 3g06_A 49 ESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA--- 118 (622)
T ss_dssp SSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---
T ss_pred CCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---
Confidence 344556666556899999999999999988 6899999999999976 6775 68999999999999999987
Q ss_pred CCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEE
Q 005744 278 CLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356 (679)
Q Consensus 278 ~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~ 356 (679)
.+.+|++|++++|.+.. |.. +++|++|++++|.++.+|. .+.+|+.|++++ +.++.+| ..+++|+.|+
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~ 187 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELS 187 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEE
T ss_pred CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEE
Confidence 67899999999999988 554 4899999999999999886 357899999999 6788887 3468999999
Q ss_pred ccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcc
Q 005744 357 MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNST 436 (679)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~ 436 (679)
+++|.+.... ..+++|+.|++++|.+..++.. +++|+.|++..+.+......+++|+.|++++|...
T Consensus 188 Ls~N~l~~l~-----------~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 188 VSDNQLASLP-----------TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 254 (622)
T ss_dssp CCSSCCSCCC-----------CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCCCCCCCC-----------CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC
Confidence 9999875311 1247899999999999887764 47788888877665444455677888888887776
Q ss_pred eechhHHHHhhcccccccccccCcccccccccchhhccccceEeeecCC
Q 005744 437 YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 437 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
.+|. .+++|+.|++++|.. ..+|..+ ..+++|+.|++++|+
T Consensus 255 ~lp~----~~~~L~~L~Ls~N~L-~~lp~~l---~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 SLPM----LPSGLLSLSVYRNQL-TRLPESL---IHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCC-CSCCGGG---GGSCTTCEEECCSCC
T ss_pred cCCc----ccccCcEEeCCCCCC-CcCCHHH---hhccccCEEEecCCC
Confidence 6665 257788888887754 4666666 678888888888876
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=7.3e-22 Score=212.74 Aligned_cols=368 Identities=17% Similarity=0.090 Sum_probs=235.7
Q ss_pred hhcCCCeEEEccCCCcc-----cCCccc-CCcceeeeeeccCCcccCCCchhhcCCC----CccEEEeCCCcCC-----c
Q 005744 207 KIDEAPTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMT----ELRVLDLTGFRFH-----S 271 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~l~-----~ 271 (679)
...++++++++++|.+. .++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.++ .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 45678999999999986 345555 7899999999999887555555666676 7999999999988 4
Q ss_pred CCccccCCcCCCEEEcCCcccCC--cccc-----cCCCCCcEEEecCCCCCc-----cchhhhcCCCCCEEcccCCcccc
Q 005744 272 LPSSLGCLINLRTLSLENCLVVD--VAII-----GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLK 339 (679)
Q Consensus 272 lp~~i~~l~~L~~L~L~~~~~~~--~~~i-----~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~ 339 (679)
+|..+..+++|++|++++|.+.. +..+ ....+|++|++++|.++. ++..+..+++|++|++++| .++
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-Ccc
Confidence 68889999999999999999875 3333 236689999999998884 5667888999999999995 455
Q ss_pred ccCccccc-----CCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCC
Q 005744 340 EIRPNVIS-----NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (679)
Q Consensus 340 ~lp~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (679)
......+. ..++|++|++++|.+.... .......+..+++|++|++++|.+....... +
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~----l--------- 247 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---CRDLCGIVASKASLRELALGSNKLGDVGMAE----L--------- 247 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHH----H---------
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---HHHHHHHHHhCCCccEEeccCCcCChHHHHH----H---------
Confidence 44332232 3669999999999764210 0012456778899999999988764321000 0
Q ss_pred cccCCCCCCCcceEEecCCCcce-----echhHHHHhhcccccccccccCcccccccccc--hhhccccceEeeecCCCe
Q 005744 415 VWSWSDGYETSKTLKLQLNNSTY-----LGYGMKMLLKRTEDLHLDELAGFKNVVHELDD--EEGFARLRHLHVHNGPEI 487 (679)
Q Consensus 415 ~~~~~~~~~~l~~L~L~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l 487 (679)
.......+++++.|+++++.... ++..+.. +++|++|++++|......+..+.. ....++|++|++++|...
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 00011234566666666665443 3333333 578888888887643322222210 012368999999888621
Q ss_pred eEEEe-CCCccccccccceeeccccccccccccCcccCCCCc-cccCCccEEEEecCCCccc-----cccHHHHHHhhcC
Q 005744 488 LHILN-SDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD-KSFSNLRIIKVEGCHRVKH-----LFPFSLVKNLLQL 560 (679)
Q Consensus 488 ~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~-----l~~~~~~~~l~~L 560 (679)
..-.. .......+++|++|+++++ .+.......+. ... ...++|++|++++| .++. + + ..+..+++|
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n-~i~~~~~~~l-~-~~l~~~~~L 400 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC--QGLGQPGSVLRVLWLADC-DVSDSSCSSL-A-ATLLANHSL 400 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH--HHHTSTTCCCCEEECTTS-CCCHHHHHHH-H-HHHHHCCCC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH--HHHcCCCCceEEEECCCC-CCChhhHHHH-H-HHHHhCCCc
Confidence 10000 0011235688999999884 55543211111 000 12579999999997 5653 3 1 345678999
Q ss_pred cEEEEcccccchhhhccccccccCCCCcccc-ccccccceeeccCCCC
Q 005744 561 QKVKVTDCTNLKLIVGKESENSAHKNGSISG-VYFRKLHFLKLQHLPQ 607 (679)
Q Consensus 561 ~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~cp~ 607 (679)
++|++++|+ +.......-.. .+ ...++|+.|.+.++..
T Consensus 401 ~~L~l~~N~-i~~~~~~~l~~--------~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 401 RELDLSNNC-LGDAGILQLVE--------SVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CEEECCSSS-CCHHHHHHHHH--------HHTSTTCCCCEEECTTCCC
T ss_pred cEEECCCCC-CCHHHHHHHHH--------HhccCCcchhheeeccccc
Confidence 999999884 43322110000 01 1344677887777643
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.7e-21 Score=216.84 Aligned_cols=373 Identities=10% Similarity=-0.040 Sum_probs=240.9
Q ss_pred hcCCCeEEEccCCCcccC-Cccc-C-Ccc-eeeeeeccCCcc-cCCCchhhcCCCCccEEEeCCCcCCc-----CCcccc
Q 005744 208 IDEAPTAISIPFRGIYEL-PERL-G-FLK-LKLFLFFTENLS-LQIPDPFFEGMTELRVLDLTGFRFHS-----LPSSLG 277 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l-~~~~-~-~~~-L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~ 277 (679)
..+++++|+++++.+... +..+ . +++ |++|++++|... ......+...+++|++|++++|.++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 567899999998876322 2222 2 444 999999887621 11112233578999999999998653 333456
Q ss_pred CCcCCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccc---cccCcccccC
Q 005744 278 CLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL---KEIRPNVISN 348 (679)
Q Consensus 278 ~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~lp~~~l~~ 348 (679)
.+++|++|++++|.+.. +..+.++++|++|++++|.+..+|..+..+++|++|+++.+... ...+.. ++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhc
Confidence 78899999999998862 34566789999999999998899988999999999999763322 122223 677
Q ss_pred CCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCC--ccc-cccccceeEEEeCCc----ccCCCC
Q 005744 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP--QDL-VFVELERFRICIGDV----WSWSDG 421 (679)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~l~~~~~----~~~~~~ 421 (679)
+++|+.|++.++... .....+..+++|++|++++|.+.... ..+ .+++|+.|++..+.. ......
T Consensus 269 ~~~L~~L~l~~~~~~--------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN--------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp CTTCCEEEETTCCTT--------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred cccccccCccccchh--------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 888999988765321 22344567788999999988743211 112 678899998872211 112345
Q ss_pred CCCcceEEecC----------CCccee--chhHHHHhhcccccccccccCcccccccccchhhccccceEeeecC---CC
Q 005744 422 YETSKTLKLQL----------NNSTYL--GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG---PE 486 (679)
Q Consensus 422 ~~~l~~L~L~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~---~~ 486 (679)
+++|+.|+++. +..... ...+...+++|++|++..+......+..+. ..+++|++|+++++ +.
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG--TYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH--HHCCSCCEEEEEECSCCSC
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH--hhCCCCcEEEEeecCCCcc
Confidence 67899999984 333321 122233478999999954443333333331 34899999999854 33
Q ss_pred eeEEEeC---CCccccccccceeecccccc-ccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhcCcE
Q 005744 487 ILHILNS---DGRVGTFPLLESLFLHNLIN-LEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQK 562 (679)
Q Consensus 487 l~~~~~~---~~~~~~~~~L~~L~l~~c~~-L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 562 (679)
++..+.. ......+++|++|+++.|.+ +.......+ ...+++|+.|++++|. +++......+..+++|++
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-----~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-----GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-----HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCE
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-----HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCe
Confidence 3321100 00124689999999987664 322111111 1347899999999864 654322234567899999
Q ss_pred EEEcccccchhhhccccccccCCCCccccccccccceeeccCCCCccc
Q 005744 563 VKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTS 610 (679)
Q Consensus 563 L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~ 610 (679)
|+|++|+ +....... ....+++|++|+|++|+ ++.
T Consensus 493 L~l~~n~-l~~~~~~~-----------~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 493 LEMRGCC-FSERAIAA-----------AVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp EEEESCC-CBHHHHHH-----------HHHHCSSCCEEEEESCB-CCT
T ss_pred eeccCCC-CcHHHHHH-----------HHHhcCccCeeECcCCc-CCH
Confidence 9999997 54321110 23478999999999997 543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=7.9e-20 Score=186.01 Aligned_cols=236 Identities=15% Similarity=0.147 Sum_probs=173.3
Q ss_pred hhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCE
Q 005744 207 KIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRT 284 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 284 (679)
...+++++|++++|.+..++. .+ .+++|++|++++|.+.+..+ +..+++|++|++++|.++.+|. .++|++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 345689999999999988774 34 89999999999999875443 6899999999999999987763 389999
Q ss_pred EEcCCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccc-cCCCCCcEEEccCCc
Q 005744 285 LSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGNSF 361 (679)
Q Consensus 285 L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l-~~l~~L~~L~l~~~~ 361 (679)
|++++|.+.. +.. .+++|++|++++|.++.++. .++.+++|++|++++ +.++.+++..+ ..+++|++|++++|.
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc
Confidence 9999999988 432 37889999999999998865 688999999999999 56777655445 478999999999998
Q ss_pred ccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeCCcccCCCCCCCcceEEecCCCcceech
Q 005744 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (679)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~ 440 (679)
+.... ....+++|+.|++++|.+..++..+ .+++|+.|++. ++....+|.
T Consensus 181 l~~~~---------~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~--------------------~N~l~~l~~ 231 (317)
T 3o53_A 181 IYDVK---------GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR--------------------NNKLVLIEK 231 (317)
T ss_dssp CCEEE---------CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT--------------------TSCCCEECT
T ss_pred Ccccc---------cccccccCCEEECCCCcCCcchhhhcccCcccEEECc--------------------CCcccchhh
Confidence 75432 2335889999999999988777665 55566665554 333333343
Q ss_pred hHHHHhhcccccccccccCc-ccccccccchhhccccceEeeecCC
Q 005744 441 GMKMLLKRTEDLHLDELAGF-KNVVHELDDEEGFARLRHLHVHNGP 485 (679)
Q Consensus 441 ~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~ 485 (679)
.+.. +++|+.|++++|... ..++.++ ..+++|+.|++.++.
T Consensus 232 ~~~~-l~~L~~L~l~~N~~~~~~~~~~~---~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 232 ALRF-SQNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCC-CTTCCEEECTTCCCBHHHHHHHH---HTCHHHHHHHHHHHH
T ss_pred Hhhc-CCCCCEEEccCCCccCcCHHHHH---hccccceEEECCCch
Confidence 3322 455555555555543 3333434 445555555555443
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.5e-18 Score=173.71 Aligned_cols=193 Identities=21% Similarity=0.207 Sum_probs=160.4
Q ss_pred hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
...+++.++++++.+..+|..+. +++++|++++|.+.+ ++...|..+++|++|++++|.++.+|.. +.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 35678999999999999987663 789999999999874 4444568999999999999999988764 78999999999
Q ss_pred CCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++ +.++.+|++.+..+++|+.|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999988 8889999999999999999998874 588999999999999 678889888788999999999999987532
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEE
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC 411 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 411 (679)
. ...+..+++|+.|++++|.+..+|..+ ...+|+.+.+.
T Consensus 164 ~-------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 164 P-------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp C-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred C-------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 1 234577899999999999998887765 44455555543
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.9e-18 Score=170.10 Aligned_cols=191 Identities=23% Similarity=0.380 Sum_probs=150.2
Q ss_pred CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcC
Q 005744 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLE 288 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~ 288 (679)
...+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356788999998888887553 67899999998876 56655568899999999999999888765 4789999999999
Q ss_pred CcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744 289 NCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 289 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
+|.+.. +..+.++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|+..++.+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 998888 45678899999999999988877754 68899999999998 578888887788899999999998876532
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEE
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRI 410 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 410 (679)
....+..+++|+.|++++|.+..++... .+++|+.|++
T Consensus 173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 173 -------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 1234677888999999988887776543 3444544444
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=7e-19 Score=175.39 Aligned_cols=203 Identities=21% Similarity=0.304 Sum_probs=139.1
Q ss_pred ccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-c
Q 005744 198 VADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-S 274 (679)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~ 274 (679)
+..+..+|...+.++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++.++ .
T Consensus 16 ~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChh
Confidence 344455555556678888888888877665 33 6788888888888766 444444577888888888888877664 5
Q ss_pred cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCc--cchhhhcCCCCCEEcccCCccccccCcccccCCC
Q 005744 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (679)
Q Consensus 275 ~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~ 350 (679)
.+.++++|++|++++|.+.. +..++++++|++|++++|.++. +|..++++++|++|++++ +.++.+++..+..++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHH
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhh
Confidence 67788888888888887777 3467788888888888887775 677788888888888887 566666665566666
Q ss_pred CCc----EEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEE
Q 005744 351 RLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRI 410 (679)
Q Consensus 351 ~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 410 (679)
+|+ .|++++|.+..... ......+|+.|++++|.+..++..+ .+++|+.|++
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~--------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQP--------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECT--------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred hccccceeeecCCCcccccCc--------cccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 666 77777776653221 1122336778888877777666543 3444444444
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.7e-18 Score=170.40 Aligned_cols=189 Identities=24% Similarity=0.382 Sum_probs=162.8
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 274 (679)
.+..++.+|...+.++++|++++|.+..++.. + .+++|++|++++|.+. .+|..+|..+++|++|++++|.++.+|.
T Consensus 24 ~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 24 SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp TTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred cCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 34556666766678899999999999888863 4 8999999999999887 7888888999999999999999998864
Q ss_pred -cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCC
Q 005744 275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (679)
Q Consensus 275 -~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~ 350 (679)
.+..+++|++|++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+++..+.+++
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLT 181 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCC
Confidence 56899999999999999988 46689999999999999999999876 78999999999999 678889887789999
Q ss_pred CCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (679)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (679)
+|++|++++|.+.... ...+..+++|+.|++++|.+.
T Consensus 182 ~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVP-------EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCC-------TTTTTTCTTCCEEECCSSCBC
T ss_pred CcCEEECCCCcCCcCC-------HHHhccccCCCEEEecCCCee
Confidence 9999999999775321 234677899999999998754
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.2e-20 Score=210.19 Aligned_cols=370 Identities=13% Similarity=0.050 Sum_probs=226.3
Q ss_pred hhcCCCeEEEccCCCccc-CCccc--CCcceeeeeeccCC-cccCCCchhhcCCCCccEEEeCCCcCCc-----CCcccc
Q 005744 207 KIDEAPTAISIPFRGIYE-LPERL--GFLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFHS-----LPSSLG 277 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~-l~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~ 277 (679)
...+++++|+++++.+.. .+..+ .+++|++|++.+|. +.......++.++++|++|++++|.++. ++....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 346789999999987733 22222 58899999999884 3322233445689999999999998653 333344
Q ss_pred CCcCCCEEEcCCcc--cCC---cccccCCCCCcEEEecCC-CCCccchhhhcCCCCCEEcccCCcc------ccccCccc
Q 005744 278 CLINLRTLSLENCL--VVD---VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSK------LKEIRPNV 345 (679)
Q Consensus 278 ~l~~L~~L~L~~~~--~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~------l~~lp~~~ 345 (679)
.+++|++|++++|. +.. ...+.++++|++|++++| .+..+|..+.++++|++|++..|.. +..++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~- 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA- 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-
Confidence 77899999999987 221 122355799999999998 6667888889999999998766432 3334443
Q ss_pred ccCCCCCcEEE-ccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccC--Cccc-cccccceeEEEeCCccc----
Q 005744 346 ISNLTRLEELY-MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVM--PQDL-VFVELERFRICIGDVWS---- 417 (679)
Q Consensus 346 l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~---- 417 (679)
++++++|+.|. +.+... ......+..+++|+.|+++++.+... ...+ .+++|+.|++..+....
T Consensus 261 l~~~~~L~~Ls~~~~~~~--------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP--------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHTCTTCCEEECCBTCCG--------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred HhcCCCcccccCCcccch--------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 67777788773 222111 01122234567788888877764321 1111 56778888876552111
Q ss_pred CCCCCCCcceEEecC--------CCccee--chhHHHHhhcccccccccccCcccccccccchhhccccceEeee-----
Q 005744 418 WSDGYETSKTLKLQL--------NNSTYL--GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVH----- 482 (679)
Q Consensus 418 ~~~~~~~l~~L~L~~--------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~----- 482 (679)
....+++|+.|++.. +..... ...+...+++|+.|.+..+......+..+. ..+++|++|+++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~--~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA--RNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH--HHCTTCCEEEEEESSTT
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH--hhCCCcceeEeecccCC
Confidence 122367788888743 111111 112223367899996544433222222221 358899999998
Q ss_pred cCCCeeEEEeC---CCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHHhhc
Q 005744 483 NGPEILHILNS---DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQ 559 (679)
Q Consensus 483 ~~~~l~~~~~~---~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~ 559 (679)
+|..+...+.. ......+++|++|++++ ++.......+. ..+++|+.|++++|. +++.........+++
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~-----~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG-----TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDS 482 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH-----HHCTTCCEEEEESCC-SSHHHHHHHHHHCTT
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH-----HhchhccEeeccCCC-CcHHHHHHHHhcCCC
Confidence 44544321100 00124678999999966 44432111111 237899999999875 554422233467899
Q ss_pred CcEEEEcccccchhhhccccccccCCCCccccccccccceeeccCCCC
Q 005744 560 LQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (679)
Q Consensus 560 L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~ 607 (679)
|++|++++|+. ....... ....+++|++|++++|+.
T Consensus 483 L~~L~L~~n~~-~~~~~~~-----------~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 483 LRKLEIRDCPF-GDKALLA-----------NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCSC-CHHHHHH-----------TGGGGGGSSEEEEESSCC
T ss_pred cCEEECcCCCC-cHHHHHH-----------HHHhCCCCCEEeeeCCCC
Confidence 99999999975 3222110 234689999999999975
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=2.9e-20 Score=188.73 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=98.6
Q ss_pred CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcc-cCCCchhh------cCCCCccEEEeCCCcCC-cCCccc--cCC
Q 005744 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLS-LQIPDPFF------EGMTELRVLDLTGFRFH-SLPSSL--GCL 279 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~L~~L~l~~~~l~-~lp~~i--~~l 279 (679)
.+++.+++++|.+ .+|..+. ..|++|++++|.+. ..+|..+. .++++|++|++++|.++ .+|..+ ..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3455566666666 5555431 11666666666652 23444331 14666666666666665 456554 666
Q ss_pred cCCCEEEcCCcccCC-cccccCC-----CCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccc--cCcc-cccCC
Q 005744 280 INLRTLSLENCLVVD-VAIIGDL-----KKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKE--IRPN-VISNL 349 (679)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~-~l~~l 349 (679)
++|++|++++|.+.. |..++.+ ++|++|++++|.++.+| ..++++++|++|++++|...+. ++.. .++.+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 666666666666665 5555555 66666666666666555 4566666666666666432222 1222 12566
Q ss_pred CCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc
Q 005744 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (679)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (679)
++|++|++++|.+..... ....-+..+++|+.|++++|.+..
T Consensus 201 ~~L~~L~L~~N~l~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSG----VCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCCEEECTTSCCCCHHH----HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCEEECCCCcCcchHH----HHHHHHhcCCCCCEEECCCCcCCc
Confidence 666666666665531000 001122355666666666665544
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=4e-18 Score=172.42 Aligned_cols=192 Identities=17% Similarity=0.259 Sum_probs=163.9
Q ss_pred hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 286 (679)
...+++++|+++++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 346789999999999988886558999999999999887 4555 689999999999999999886 689999999999
Q ss_pred cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (679)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (679)
+++|.+...+.++.+++|++|++++|.++.+|. ++.+++|++|++++ +.++.+++ ++.+++|++|++++|.+..
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-- 187 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD-- 187 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc--
Confidence 999999885569999999999999999999886 89999999999999 57788776 8899999999999997742
Q ss_pred ccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCc
Q 005744 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV 415 (679)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 415 (679)
+..+..+++|+.|++++|.+..++....+++|+.|++..+.+
T Consensus 188 -------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 188 -------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred -------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 234788999999999999988777533677777777765553
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.6e-19 Score=192.90 Aligned_cols=237 Identities=17% Similarity=0.128 Sum_probs=149.6
Q ss_pred CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEe
Q 005744 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL 309 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 309 (679)
+++|++|++++|.+.+ +++..|..+++|++|++++|.++.+++ ++.+++|++|++++|.+.. +. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 4467777777777664 443344777777777777777765544 7777777777777777665 32 267777777
Q ss_pred cCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhh-cCCCCceEEe
Q 005744 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEV 388 (679)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l 388 (679)
++|.++.+|. ..+++|++|++++ +.++.+++..++.+++|++|++++|.+.... +..+. .+++|+.|++
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-------GGGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCcC-------hHHHhhhCCcccEEec
Confidence 7777776654 3456777777777 4556655544677777777777777665322 22333 5677777777
Q ss_pred ecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccccccccc
Q 005744 389 HIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD 468 (679)
Q Consensus 389 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (679)
++|.+..++... .+++|+.|+|+++....+|..+.. +++|+.|++++|.. ..+|..+
T Consensus 177 s~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~~~~~~~~-l~~L~~L~Ls~N~l-~~lp~~l- 233 (487)
T 3oja_A 177 QYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKL-VLIEKAL- 233 (487)
T ss_dssp TTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGGGGG-GTTCSEEECTTSCC-CEECTTC-
T ss_pred CCCccccccccc--------------------cCCCCCEEECCCCCCCCCCHhHcC-CCCccEEEecCCcC-cccchhh-
Confidence 777665443322 244555555666655556555544 67888888888764 4566666
Q ss_pred chhhccccceEeeecCCCe-eEEEeCCCccccccccceeecccc
Q 005744 469 DEEGFARLRHLHVHNGPEI-LHILNSDGRVGTFPLLESLFLHNL 511 (679)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~c 511 (679)
..+++|+.|++++|+.. ..+ ......++.|+.+.+..+
T Consensus 234 --~~l~~L~~L~l~~N~l~c~~~---~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 234 --RFSQNLEHFDLRGNGFHCGTL---RDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp --CCCTTCCEEECTTCCBCHHHH---HHHHTTCHHHHHHHHHHH
T ss_pred --ccCCCCCEEEcCCCCCcCcch---HHHHHhCCCCcEEecccc
Confidence 66788888888887632 111 112345677777777543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=5.5e-18 Score=168.87 Aligned_cols=176 Identities=23% Similarity=0.312 Sum_probs=124.7
Q ss_pred EEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCccc
Q 005744 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLV 292 (679)
Q Consensus 214 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~ 292 (679)
.++-.+..+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555566667776442 56888888888876 444444578888888888888888765 4678888888888888888
Q ss_pred CC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccc--cCcccccCCCCCcEEEccCCcccceec
Q 005744 293 VD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 293 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
.. +..+.++++|++|++++|.++.++. .++++++|++|++++ +.++. +|.. ++++++|++|++++|.+.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence 77 4678888888888888888887765 578888888888888 45555 3443 7888888888888887653221
Q ss_pred cCCcCChhhhhcCCCCc-eEEeecCCCccCC
Q 005744 368 GQSNASLGELKQLSRLT-TLEVHIPDAQVMP 397 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 397 (679)
..+..+.+++.|. .|++++|.+..++
T Consensus 167 ----~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 167 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----GGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----HHhhhhhhccccceeeecCCCcccccC
Confidence 2344455555554 6777776665443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.4e-18 Score=172.56 Aligned_cols=175 Identities=24% Similarity=0.294 Sum_probs=110.5
Q ss_pred hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTL 285 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 285 (679)
....+++.++++++.+..++....+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.+|. .++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3456677777777777666654467777777777776653 32 24667777777777777766643 35667777777
Q ss_pred EcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744 286 SLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
++++|.+.. +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+++..++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcC
Confidence 777777666 33466677777777777777666554 46677777777776 456666665556667777777776655
Q ss_pred cceeccCCcCChhhhhcCCCCceEEeecCC
Q 005744 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (679)
Q Consensus 363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 392 (679)
... ....+..+++|+.|++++|.
T Consensus 194 ~~~-------~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSV-------PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCC-------CTTTTTTCTTCCEEECCSSC
T ss_pred Ccc-------CHHHHhCCcCCCEEEccCCC
Confidence 421 11234555666666665553
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1e-18 Score=188.22 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=151.8
Q ss_pred hcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEE
Q 005744 208 IDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTL 285 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 285 (679)
.+++++.|++++|.+..++. .+ .+++|++|++++|.+.+..| +..+++|++|++++|.++.+|.. ++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 34589999999999988764 44 89999999999999875544 68999999999999999987643 899999
Q ss_pred EcCCcccCC-cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCccccc-CCCCCcEEEccCCcc
Q 005744 286 SLENCLVVD-VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS-NLTRLEELYMGNSFT 362 (679)
Q Consensus 286 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~-~l~~L~~L~l~~~~~ 362 (679)
++++|.+.. +. ..+++|++|++++|.++.+ |..++.+++|++|++++ +.++.+++..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999988 43 2468999999999999977 45789999999999999 566665444465 799999999999987
Q ss_pred cceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-cccccceeEEEeC
Q 005744 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIG 413 (679)
Q Consensus 363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~ 413 (679)
.... ....+++|+.|++++|.+..++..+ .+++|+.|++..+
T Consensus 182 ~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 182 YDVK---------GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CEEE---------CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred cccc---------ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence 6432 2346889999999999998877665 5566666665443
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=2.6e-19 Score=181.73 Aligned_cols=219 Identities=16% Similarity=0.208 Sum_probs=158.3
Q ss_pred CCeEEEccCCCccc--CCccc--------CCcceeeeeeccCCcccCCCchhh-cCCCCccEEEeCCCcCCcCCccccCC
Q 005744 211 APTAISIPFRGIYE--LPERL--------GFLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSLPSSLGCL 279 (679)
Q Consensus 211 ~l~~l~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~lp~~i~~l 279 (679)
.++++++++|.+.. ++... .+++|++|++++|.+.+.+|..+| ..+++|++|++++|.++.+|..++.+
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 37777888877743 44433 488899999999988878887764 78899999999999988888777777
Q ss_pred -----cCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCc---cchhh--hcCCCCCEEcccCCccccc---cCcc
Q 005744 280 -----INLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ---LPREI--GQLTCLKLLDLSNCSKLKE---IRPN 344 (679)
Q Consensus 280 -----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---lp~~ 344 (679)
++|++|++++|.+.. +..++++++|++|++++|++.. +|..+ +.+++|++|++++ +.++. ++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHH
Confidence 889999999998888 4788899999999999998663 35555 7889999999988 45663 3334
Q ss_pred cccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCC
Q 005744 345 VISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYET 424 (679)
Q Consensus 345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 424 (679)
.+..+++|++|++++|.+....+ ...+..+++|+.|++++|.+..+|..+. ++|+.|+
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~--------------- 280 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAG------APSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLD--------------- 280 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCC------CSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEE---------------
T ss_pred HHhcCCCCCEEECCCCcCCcccc------hhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEE---------------
Confidence 34677899999999887753221 1234557889999999888887776543 4444444
Q ss_pred cceEEecCCCcceechhHHHHhhcccccccccccC
Q 005744 425 SKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459 (679)
Q Consensus 425 l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 459 (679)
++++.....|. +. .+++|+.|++++|..
T Consensus 281 -----Ls~N~l~~~p~-~~-~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 281 -----LSYNRLDRNPS-PD-ELPQVGNLSLKGNPF 308 (312)
T ss_dssp -----CCSSCCCSCCC-TT-TSCEEEEEECTTCTT
T ss_pred -----CCCCCCCCChh-Hh-hCCCCCEEeccCCCC
Confidence 44444433433 22 257777777777653
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=2.1e-18 Score=174.51 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=160.2
Q ss_pred ccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcc
Q 005744 217 IPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296 (679)
Q Consensus 217 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~ 296 (679)
+..+.+..+.....+++|++|+++++.+. .++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++
T Consensus 26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 26 AGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp TTCSSTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred hCCCCcCceecHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 33444444333336889999999999876 4653 5889999999999999999887 999999999999999998877
Q ss_pred cccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhh
Q 005744 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGE 376 (679)
Q Consensus 297 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 376 (679)
.++.+++|++|++++|.++.+|. +..+++|++|++++ +.++.+++ ++.+++|++|++++|.+.. +..
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~ 168 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD---------LTP 168 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGG
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC---------Chh
Confidence 89999999999999999999886 99999999999999 57788876 8899999999999997742 233
Q ss_pred hhcCCCCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhccccccccc
Q 005744 377 LKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDE 456 (679)
Q Consensus 377 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 456 (679)
+..+++|+.|++++|.+..++....+++ |+.|+++++.....+. +. .+++|+.|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~l~~l~~--------------------L~~L~L~~N~l~~~~~-l~-~l~~L~~L~l~~ 226 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISPLASLPN--------------------LIEVHLKNNQISDVSP-LA-NTSNLFIVTLTN 226 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTT--------------------CCEEECTTSCCCBCGG-GT-TCTTCCEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChhhcCCCC--------------------CCEEEccCCccCcccc-cc-CCCCCCEEEccC
Confidence 8889999999999998877655224444 4555555554444442 32 267788888887
Q ss_pred ccC
Q 005744 457 LAG 459 (679)
Q Consensus 457 ~~~ 459 (679)
|..
T Consensus 227 N~i 229 (308)
T 1h6u_A 227 QTI 229 (308)
T ss_dssp EEE
T ss_pred Cee
Confidence 764
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=4e-18 Score=165.90 Aligned_cols=199 Identities=12% Similarity=0.174 Sum_probs=157.6
Q ss_pred hhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCC-CcCCcCC-ccc
Q 005744 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSL 276 (679)
Q Consensus 201 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~i 276 (679)
++.+|. .+.+++.|++++|.+..++.. + .+++|++|++++|.....++...|.++++|++|++++ |.++.+| ..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 555665 667899999999999888773 3 7899999999999733367766678999999999998 8898886 568
Q ss_pred cCCcCCCEEEcCCcccCCcccccCCCCCc---EEEecCC-CCCccchh-hhcCCCCC-EEcccCCccccccCcccccCCC
Q 005744 277 GCLINLRTLSLENCLVVDVAIIGDLKKLE---ILSLKHS-SIEQLPRE-IGQLTCLK-LLDLSNCSKLKEIRPNVISNLT 350 (679)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~l~~l~ 350 (679)
.++++|++|++++|.+...+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++ +.++.+|...+.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-C
Confidence 88999999999999988833388888888 9999999 99988865 78899999 999988 6777888875555 8
Q ss_pred CCcEEEccCCc-ccceeccCCcCChhhhhcC-CCCceEEeecCCCccCCccccccccceeEE
Q 005744 351 RLEELYMGNSF-TQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDLVFVELERFRI 410 (679)
Q Consensus 351 ~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 410 (679)
+|++|++++|. +.... ...+..+ ++|+.|++++|.+..+|.. .+.+|+.|.+
T Consensus 180 ~L~~L~L~~n~~l~~i~-------~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVID-------KDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp EEEEEECTTCTTCCEEC-------TTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred CCCEEEcCCCCCcccCC-------HHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 89999999984 64221 2345667 8899999999988877765 5666766665
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.1e-17 Score=167.41 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=160.2
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 274 (679)
.+..++.+|...+++++.|++++|.+..++.. + .+++|++|++++|.+.+ ++. ...+++|++|++++|.++.+|.
T Consensus 18 ~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~~l~~ 94 (290)
T 1p9a_G 18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLPVLGTLDLSHNQLQSLPL 94 (290)
T ss_dssp TTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCCcCCEEECCCCcCCcCch
Confidence 34556667766678999999999999877543 3 89999999999999874 443 2789999999999999999999
Q ss_pred cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (679)
Q Consensus 275 ~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~ 351 (679)
.+..+++|++|++++|.+.. +..|.++++|++|++++|+++.+|.. +..+++|++|++++ +.++.+|++.+.++++
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLEN 173 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTT
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCC
Confidence 99999999999999999998 46799999999999999999998876 57899999999999 6889999987889999
Q ss_pred CcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (679)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (679)
|++|++++|.+. .....+....+|+.+++++|...
T Consensus 174 L~~L~L~~N~l~--------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 174 LDTLLLQENSLY--------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECCSSCCC--------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCC--------ccChhhcccccCCeEEeCCCCcc
Confidence 999999999876 23345566779999999998764
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.75 E-value=3.3e-18 Score=207.31 Aligned_cols=171 Identities=17% Similarity=0.230 Sum_probs=141.2
Q ss_pred CCCCCceeccC-CCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCC
Q 005744 4 YEYSEDFLDWL-LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNP 82 (679)
Q Consensus 4 ~~~~~~~~~~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~ 82 (679)
++..++|++++ |+++|||+||.+.++.. .+++++++++|+++|+|+||||+++|++|+.+. ..|+..++.+.....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 56678999996 99999999999999632 345567899999999999999999999999765 579999999977654
Q ss_pred Ccccc-----cccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 005744 83 RKIQG-----MDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN 157 (679)
Q Consensus 83 ~~~~~-----~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~ 157 (679)
..+.. .+....++.+||+.||.+ .|.||+|||+||+++.|+++.++.+|.+++ +.+.+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~ 417 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQE 417 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHH
Confidence 33221 122378999999999998 899999999999999999999999997753 244567899
Q ss_pred HHhccccccCC--CCCceEehhhHHHHHHHHHhcc
Q 005744 158 LKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEK 190 (679)
Q Consensus 158 L~~~~~~~~~~--~~~~~~mhdli~~l~~~~~~~e 190 (679)
|+++++++... +..+|+||+++|++++..+.++
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999998543 2336999999999999887665
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=3.3e-17 Score=160.59 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=145.9
Q ss_pred CCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcC
Q 005744 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLE 288 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~ 288 (679)
...++++++++.+..+|..+. ++++.|++++|.+.+ ++...|.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 346788999999998887664 689999999999874 44445689999999999999998774 458899999999999
Q ss_pred CcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744 289 NCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 289 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
+|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|+..++.+++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999988 46788999999999999999988876 58899999999999 688888887788999999999999977532
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCcc
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (679)
....+..+++|+.|++++|.+..
T Consensus 171 -------~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 -------PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred -------CHHHHhCCCCCCEEEeeCCceeC
Confidence 22356778899999999887653
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.1e-17 Score=162.82 Aligned_cols=165 Identities=15% Similarity=0.221 Sum_probs=126.3
Q ss_pred CcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc-CCcCCc-cccCCcCCCEEEcCC-cccCC--c
Q 005744 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPS-SLGCLINLRTLSLEN-CLVVD--V 295 (679)
Q Consensus 221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~L~~-~~~~~--~ 295 (679)
.+..+|. -.+++++|++++|.+. .+|...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.+.. +
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3677777 3448999999998877 5666566889999999999996 888764 688899999999998 78877 4
Q ss_pred ccccCCCCCcEEEecCCCCCccchhhhcCCCCC---EEcccCCccccccCcccccCCCCCc-EEEccCCcccceeccCCc
Q 005744 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLK---LLDLSNCSKLKEIRPNVISNLTRLE-ELYMGNSFTQWKVEGQSN 371 (679)
Q Consensus 296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 371 (679)
..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|+..+..+++|+ +|++++|.+.. .+.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~--- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG--- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECT---
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCH---
Confidence 578889999999999998888887 88888888 9999985488888887788888999 99988887652 211
Q ss_pred CChhhhhcCCCCceEEeecCC-CccCC
Q 005744 372 ASLGELKQLSRLTTLEVHIPD-AQVMP 397 (679)
Q Consensus 372 ~~~~~l~~l~~L~~L~l~~~~-~~~~~ 397 (679)
..+.. ++|+.|++++|. +..++
T Consensus 174 ---~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 174 ---YAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp ---TTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ---hhcCC-CCCCEEEcCCCCCcccCC
Confidence 11222 567777777763 55443
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.1e-16 Score=158.98 Aligned_cols=188 Identities=19% Similarity=0.303 Sum_probs=126.9
Q ss_pred EEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC
Q 005744 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294 (679)
Q Consensus 215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~ 294 (679)
+.+..+.+..+.....+++|+.|++.++.+. .++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..
T Consensus 24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred HHhcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence 3444444433333336777777777777654 3433 467777888888877777654 57777778888888777776
Q ss_pred --cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCc
Q 005744 295 --VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (679)
Q Consensus 295 --~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 371 (679)
+..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+++..++.+++|++|++++|.+...
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 172 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSL------ 172 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC------
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCcc------
Confidence 34467777888888887777776654 57777788888877 466777766567777788888777765421
Q ss_pred CChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCC
Q 005744 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD 414 (679)
Q Consensus 372 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 414 (679)
....+..+++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 173 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 173 -PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 1223566777778888777777666553 56777777776554
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.8e-17 Score=162.35 Aligned_cols=173 Identities=24% Similarity=0.301 Sum_probs=144.1
Q ss_pred hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
...+++.+++++|.+..++....+++|++|++++|.+.+ ++. +..+++|++|++++|.++.+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 456799999999999888765588999999999998874 444 5889999999999999888765 889999999999
Q ss_pred CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
++|.+...+.++.+++|++|++++|.++.+ ..++.+++|++|++++ +.++.+++ ++.+++|++|++++|.+..
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~--- 192 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD--- 192 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB---
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC---
Confidence 999988877888999999999999999888 4688999999999998 57777766 7889999999999987642
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCC
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (679)
+..+..+++|+.|++++|.+...+
T Consensus 193 ------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 ------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ------ChhhccCCCCCEEECcCCcccCCc
Confidence 245788889999999888765433
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=8.9e-17 Score=157.53 Aligned_cols=165 Identities=22% Similarity=0.336 Sum_probs=144.3
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCcc-c-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP- 273 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp- 273 (679)
.+..+..+|...+..++.|++++|.+..++.. + .+++|++|++++|.+.+ ++...|..+++|++|++++|.++.+|
T Consensus 22 ~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 22 QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccCh
Confidence 44566677776778999999999999887764 3 89999999999999885 55555699999999999999999886
Q ss_pred ccccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCC
Q 005744 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (679)
Q Consensus 274 ~~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~ 350 (679)
..+..+++|++|++++|.+.. + ..++++++|++|++++|.++.+|. .++.+++|++|++++ +.++.+++..+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 557899999999999999998 4 457999999999999999999987 589999999999999 688899887799999
Q ss_pred CCcEEEccCCccc
Q 005744 351 RLEELYMGNSFTQ 363 (679)
Q Consensus 351 ~L~~L~l~~~~~~ 363 (679)
+|++|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999774
No 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.71 E-value=8.9e-18 Score=186.33 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=118.5
Q ss_pred Cceecc------CCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCC--ChHHHHHHHHHhhc
Q 005744 8 EDFLDW------LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLSN 79 (679)
Q Consensus 8 ~~~~~~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~--~~~~W~~~~~~l~~ 79 (679)
.+|+|+ +|+++|||+||++++... ..++.++| |+|+||||+++|+.|+++ +.++|+..
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 468888 999999999999995432 23344444 999999999999999976 78889753
Q ss_pred cCCCcccccccccceeeeccccCChhhH-HHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 005744 80 SNPRKIQGMDADLSSIELSYEFLKCKEV-KSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (679)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~SY~~L~~~~l-k~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L 158 (679)
.......++.+||+.||.+ . |.||+|||+||+++.|.++.++.+|+++|. + .+.+++++|
T Consensus 351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eL 411 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKL 411 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHH
Confidence 0122378899999999998 7 999999999999999999999999999981 1 245689999
Q ss_pred HhccccccCCCCCceEehhhHHHHHH
Q 005744 159 KSASLLFDGDSEDHAKMHRIIHAIAV 184 (679)
Q Consensus 159 ~~~~~~~~~~~~~~~~mhdli~~l~~ 184 (679)
+++|+++..++...|+|||++++++.
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 99999987655678999999999663
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=5.9e-17 Score=162.26 Aligned_cols=184 Identities=21% Similarity=0.282 Sum_probs=151.8
Q ss_pred EEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC
Q 005744 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294 (679)
Q Consensus 215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~ 294 (679)
+.+..+.+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. +.++++|++|++++|.+..
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HHhcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 3444555544444447899999999999876 4554 5889999999999999999887 9999999999999999998
Q ss_pred cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCCh
Q 005744 295 VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (679)
Q Consensus 295 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (679)
++.++.+++|++|++++|.++.++ .+..+++|++|++++ +.++.++ .++.+++|++|++++|.+.. +
T Consensus 105 ~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~L~~N~l~~---------~ 171 (291)
T 1h6t_A 105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT--VLSRLTKLDTLSLEDNQISD---------I 171 (291)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCSSCCCC---------C
T ss_pred ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcch--hhccCCCCCEEEccCCcccc---------c
Confidence 777999999999999999999985 689999999999999 5777774 38999999999999997742 2
Q ss_pred hhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCc
Q 005744 375 GELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV 415 (679)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 415 (679)
..+..+++|+.|++++|.+..++....+++|+.|++..+.+
T Consensus 172 ~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred hhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 23888999999999999988876544677777777765543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.3e-16 Score=164.58 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=66.8
Q ss_pred EEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCC-cCC-ccccCCcCCCE-EEcCCcc
Q 005744 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLP-SSLGCLINLRT-LSLENCL 291 (679)
Q Consensus 215 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp-~~i~~l~~L~~-L~L~~~~ 291 (679)
++-++++++++|..+ .+++++|++++|.+. .+|...|.++++|++|+|++|.+. .+| ..|.++++|+. +.+.+|.
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 334444444444433 234555555555443 344444455555555555555543 233 23444444443 3333344
Q ss_pred cCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCC-CCcEEEccCCcc
Q 005744 292 VVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT-RLEELYMGNSFT 362 (679)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~-~L~~L~l~~~~~ 362 (679)
+.. +..+..+++|++|++++|+++.+|.. +....++..|++.+++.+..++...+..+. .++.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 444 34445555555555555555544431 223344445555444455555444344432 355555555544
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=4.5e-17 Score=165.10 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCCeEEEccCCCccc-CCcc---cCCcceeeeeeccCCcccCCC---chhhcCCCCccEEEeCCCcCCcCC-ccccCCcC
Q 005744 210 EAPTAISIPFRGIYE-LPER---LGFLKLKLFLFFTENLSLQIP---DPFFEGMTELRVLDLTGFRFHSLP-SSLGCLIN 281 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~ 281 (679)
.++++|++++|.+.. .|.. ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555532 2222 235555555555555443322 111224555555555555555442 34555555
Q ss_pred CCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCccchh----hhcCCCCCEEcccCCcccccc-CcccccCC-
Q 005744 282 LRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCSKLKEI-RPNVISNL- 349 (679)
Q Consensus 282 L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l-p~~~l~~l- 349 (679)
|++|++++|.+.. ...++++++|++|++++|+++.+|.. ++.+++|++|++++ +.++.. |+. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhh-HHhcc
Confidence 5555555554322 12224455555555555555544432 34445555555555 333333 322 3333
Q ss_pred --CCCcEEEccCCcc
Q 005744 350 --TRLEELYMGNSFT 362 (679)
Q Consensus 350 --~~L~~L~l~~~~~ 362 (679)
++|++|++++|.+
T Consensus 249 ~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 249 WSSALNSLNLSFAGL 263 (310)
T ss_dssp CCTTCCCEECCSSCC
T ss_pred CcCcCCEEECCCCCC
Confidence 3555555555544
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=3e-17 Score=168.65 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=58.6
Q ss_pred cceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc--CCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEE
Q 005744 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (679)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (679)
++++.|++.+|.+.+..+. + ..+++|++|++++|.++. +|..+..+++|++|++++|.+.. +..++++++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4445555554444433322 1 244555555555554432 44444555555555555554443 4444455555555
Q ss_pred EecCC-CCC--ccchhhhcCCCCCEEcccCCccccc--cCcccccCCC-CCcEEEccCC
Q 005744 308 SLKHS-SIE--QLPREIGQLTCLKLLDLSNCSKLKE--IRPNVISNLT-RLEELYMGNS 360 (679)
Q Consensus 308 ~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~l~-~L~~L~l~~~ 360 (679)
++++| .++ .+|..+.++++|++|++++|..++. ++. .+..++ +|++|++++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGY 205 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSC
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCC
Confidence 55555 444 2444444555555555555423332 222 134444 5555555554
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.5e-17 Score=169.30 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=97.4
Q ss_pred hcCC--CCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC---cccccCCCCCcEEEecCCCCC-ccchhhhcCCC
Q 005744 253 FEGM--TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTC 326 (679)
Q Consensus 253 ~~~l--~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~ 326 (679)
+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +..+..+++|++|++++|.++ ..|..++++++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 4555 78999999999988776677788999999999998764 567888899999999998877 56777888888
Q ss_pred CCEEcccCCccccc--cCcccccCCCCCcEEEccCC-cccceeccCCcCChhhhhcCC-CCceEEeecC
Q 005744 327 LKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNS-FTQWKVEGQSNASLGELKQLS-RLTTLEVHIP 391 (679)
Q Consensus 327 L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 391 (679)
|++|++++|..++. ++.. ++++++|++|++++| .+... .....+..++ +|+.|++++|
T Consensus 144 L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------HVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------HHHHHHHHSCTTCCEEECCSC
T ss_pred CCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------HHHHHHHhcccCCCEEEeCCC
Confidence 99999988756653 4333 677888888888887 54310 1123455566 6666666654
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.1e-15 Score=147.26 Aligned_cols=149 Identities=21% Similarity=0.315 Sum_probs=129.5
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~ 290 (679)
.+.++.+++.+..+|..+. ++|++|++++|.+.+..| ..|..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888888988887654 889999999999885444 445899999999999999998874 4689999999999999
Q ss_pred ccCC-c-ccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
.+.. + ..+..+++|++|++++|+++.+|..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9988 4 457899999999999999999999999999999999999 6888888877889999999999998764
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=5.4e-16 Score=159.90 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=53.4
Q ss_pred eeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC---cccccCCCCCcE-EEec
Q 005744 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEI-LSLK 310 (679)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~-L~l~ 310 (679)
+++.+++.++ .+|.++ .+++++|+|++|.++.+|. .|.++++|++|+|++|.+.+ +..|.++++|++ +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4444444443 455433 2345555555555555543 34555555555555555433 123444544443 3333
Q ss_pred CCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744 311 HSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (679)
Q Consensus 311 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 357 (679)
+|+++.+|. .+..+++|++|++++ +.++.+|+..+....++..|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEE
T ss_pred CCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhh
Confidence 345554432 244455555555554 3444444332333333444443
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=6.3e-16 Score=147.89 Aligned_cols=149 Identities=13% Similarity=0.246 Sum_probs=119.9
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~ 291 (679)
+.++++++.+..+|..+ ...++.|++++|.+.+..+..+|..+++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47888888888888755 34568888888888755566667888899999999998887754 78888899999999988
Q ss_pred cCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744 292 VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
+.. +..++.+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 887 45588888899999998888877 55688888888888888 6777776666888888888888888654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=5e-16 Score=170.57 Aligned_cols=175 Identities=24% Similarity=0.297 Sum_probs=149.7
Q ss_pred hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 286 (679)
..+..++.|++++|.+..++....+++|+.|++++|.+.+ ++. +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 4467899999999999888865589999999999998874 444 689999999999999999877 689999999999
Q ss_pred cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccccee
Q 005744 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (679)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (679)
|++|.+..++.+..+++|+.|+|++|.++.+ ..+..+++|++|+|++ +.+..+++ +..+++|+.|++++|.+..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD-- 189 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCCC--
Confidence 9999998877899999999999999999988 5689999999999998 56777766 8899999999999997742
Q ss_pred ccCCcCChhhhhcCCCCceEEeecCCCccCCc
Q 005744 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (679)
Q Consensus 367 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (679)
+..+..+++|+.|++++|.+...|.
T Consensus 190 -------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 -------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 2568889999999999887765443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=7.5e-16 Score=146.27 Aligned_cols=169 Identities=24% Similarity=0.344 Sum_probs=133.9
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 291 (679)
+.++.+++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777654 468899999998877 56666678899999999999999888654 6889999999999999
Q ss_pred cCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceecc
Q 005744 292 VVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (679)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (679)
+.. + ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee-----
Confidence 888 4 4578999999999999999988775 68899999999998 5778888877888999999999988553
Q ss_pred CCcCChhhhhcCCCCceEEeecCCCc-cCCc
Q 005744 369 QSNASLGELKQLSRLTTLEVHIPDAQ-VMPQ 398 (679)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~ 398 (679)
..+++|+.|+++.|.+. .+|.
T Consensus 162 ---------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ---------cCCCCHHHHHHHHHhCCceeec
Confidence 23456777777766544 3443
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=156.96 Aligned_cols=220 Identities=14% Similarity=0.091 Sum_probs=169.0
Q ss_pred CCCeEEEccCCCcc-----cCCcccCCcceeeeeeccCCcccCCCchhh-cCCCCccEEEeCCCcCCcC-C----ccccC
Q 005744 210 EAPTAISIPFRGIY-----ELPERLGFLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSL-P----SSLGC 278 (679)
Q Consensus 210 ~~l~~l~l~~~~~~-----~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~l-p----~~i~~ 278 (679)
..++.+.+.+..+. .+.....+++|++|++++|.+.+..|..++ ..+++|++|++++|.++.. | ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35678888777663 222333567799999999999888887765 7899999999999998853 3 34567
Q ss_pred CcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCc---cchh--hhcCCCCCEEcccCCccccccCcc---cccC
Q 005744 279 LINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ---LPRE--IGQLTCLKLLDLSNCSKLKEIRPN---VISN 348 (679)
Q Consensus 279 l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~l~~lp~~---~l~~ 348 (679)
+++|++|++++|.+.. +..++++++|++|++++|++.. ++.. ++.+++|++|++++ +.++.++.. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhc
Confidence 9999999999999987 5789999999999999998764 4333 47899999999999 566665542 2567
Q ss_pred CCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCCccc--CCCCCCCcc
Q 005744 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS--WSDGYETSK 426 (679)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~ 426 (679)
+++|++|++++|.+....+ ..+..+..+++|+.|++++|.+..+|..+. ++|+.|++..+.+.. ....+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVN----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCC----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred CCCCCEEECCCCCCCccch----hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCchhhhCCCcc
Confidence 8999999999998754221 223334444799999999999998888774 899999998776543 356678899
Q ss_pred eEEecCCCc
Q 005744 427 TLKLQLNNS 435 (679)
Q Consensus 427 ~L~L~~~~~ 435 (679)
.|++++|..
T Consensus 298 ~L~L~~N~l 306 (310)
T 4glp_A 298 NLTLDGNPF 306 (310)
T ss_dssp CEECSSTTT
T ss_pred EEECcCCCC
Confidence 999998764
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=8.7e-16 Score=144.34 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=91.6
Q ss_pred hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-CCccccCCcCCCEEE
Q 005744 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLRTLS 286 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 286 (679)
.+++++++++++|.+..++....+++|++|++++|.+. .+ +. +..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~-~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NY-NP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CC-GG-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cc-hh-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 35567777777777766664336667777777666433 22 22 4666667777777666664 455666666666666
Q ss_pred cCCcccCC--cccccCCCCCcEEEecCCC-CCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744 287 LENCLVVD--VAIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 287 L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
+++|.+.. +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.++.++. +..+++|++|++++|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCccc
Confidence 66666665 5566666666666666665 66665 466666666666666 34555542 56666666666666644
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=1.3e-15 Score=145.57 Aligned_cols=148 Identities=22% Similarity=0.328 Sum_probs=112.6
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
+.++.+++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777888888876553 67888888888776 45555567888888888888888766 6778888888888888888
Q ss_pred cCC-c-ccccCCCCCcEEEecCCCCCccc-hhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744 292 VVD-V-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
+.. | ..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 877 4 34677888888888888888764 4577888888888888 6677777766777888888888877653
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=5.4e-17 Score=170.10 Aligned_cols=184 Identities=17% Similarity=0.122 Sum_probs=124.7
Q ss_pred hhcCCCeEEEccCCCccc-----CCccc-CCcceeeeeeccCC---cccCCCchh------hcCCCCccEEEeCCCcCCc
Q 005744 207 KIDEAPTAISIPFRGIYE-----LPERL-GFLKLKLFLFFTEN---LSLQIPDPF------FEGMTELRVLDLTGFRFHS 271 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~l~~ 271 (679)
...+++++|++++|.+.. ++..+ .+++|++|++++|. +.+.+|..+ +..+++|++|++++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345678888888887743 22223 67888888888753 334455443 3678888888888888775
Q ss_pred -----CCccccCCcCCCEEEcCCcccCC--ccc----ccCC---------CCCcEEEecCCCCC--ccc---hhhhcCCC
Q 005744 272 -----LPSSLGCLINLRTLSLENCLVVD--VAI----IGDL---------KKLEILSLKHSSIE--QLP---REIGQLTC 326 (679)
Q Consensus 272 -----lp~~i~~l~~L~~L~L~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~L~~ 326 (679)
+|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|.++ .+| ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 67778888888888888888764 223 3333 78888888888876 444 45677888
Q ss_pred CCEEcccCCccccc-----cCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCc
Q 005744 327 LKLLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (679)
Q Consensus 327 L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 394 (679)
|++|++++| .++. +.+..+.++++|++|++++|.+.... .......+..+++|+.|++++|.+.
T Consensus 189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCc
Confidence 888888884 4441 22213677888888888888653100 0123345677788888888877654
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-15 Score=143.47 Aligned_cols=151 Identities=17% Similarity=0.259 Sum_probs=130.7
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (679)
.+++|++|++++|.+. .+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 6889999999999887 667 3 589999999999999877665 78999999999999999987 8999999999999
Q ss_pred EecCCCCCc-cchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceE
Q 005744 308 SLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386 (679)
Q Consensus 308 ~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 386 (679)
++++|.++. .|..++.+++|++|++++|..++.+|. ++.+++|++|++++|.+. .+..+..+++|+.|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~---------~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH---------DYRGIEDFPKLNQL 186 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC---------CCTTGGGCSSCCEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc---------ChHHhccCCCCCEE
Confidence 999999985 778899999999999999766888874 899999999999999774 23378889999999
Q ss_pred EeecCCCcc
Q 005744 387 EVHIPDAQV 395 (679)
Q Consensus 387 ~l~~~~~~~ 395 (679)
++++|.+..
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998653
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=2.7e-16 Score=154.89 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=124.3
Q ss_pred hcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
...++..+++.++.+..++....+++|++|++++|.+. .++ . +..+++|++|++++|.++.+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 34455566677777776664447788888888887765 455 2 4778888888888888887776 788888888888
Q ss_pred CCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
++|.+...+.+.. .+|++|++++|.++.+| .+..+++|++|++++ +.++.++. ++.+++|++|++++|.+...
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCBC--
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcch--
Confidence 8888877333444 78888888888888776 478888888888887 56777753 77888888888888866421
Q ss_pred cCCcCChhhhhcCCCCceEEeecCCCccCC
Q 005744 368 GQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (679)
Q Consensus 368 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 397 (679)
..+..+++|+.|++++|.+...+
T Consensus 166 -------~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -------GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -------HHhccCCCCCEEeCCCCcccCCc
Confidence 45667778888888877665443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=3.6e-16 Score=171.72 Aligned_cols=187 Identities=20% Similarity=0.264 Sum_probs=154.6
Q ss_pred CCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCc
Q 005744 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (679)
Q Consensus 211 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~ 290 (679)
.+..+.+..+.+..+.....+++|+.|++++|.+. .++. +..+++|++|+|++|.++.+|. +..+++|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 34444555566655555457899999999999876 5553 5899999999999999999887 999999999999999
Q ss_pred ccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCC
Q 005744 291 LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370 (679)
Q Consensus 291 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 370 (679)
.+..++.++.+++|++|+|++|.+..+| .+..+++|+.|+|++ +.+..++. ++.+++|+.|++++|.+..
T Consensus 98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~------ 167 (605)
T 1m9s_A 98 KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD------ 167 (605)
T ss_dssp CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCCCC------
T ss_pred CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcCCC------
Confidence 9998778999999999999999999986 599999999999999 57777733 8999999999999997742
Q ss_pred cCChhhhhcCCCCceEEeecCCCccCCccccccccceeEEEeCC
Q 005744 371 NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (679)
Q Consensus 371 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (679)
+..+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 168 ---~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 168 ---IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred ---chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 12388899999999999998887544477778887775544
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=9.1e-15 Score=158.69 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=134.6
Q ss_pred cCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcC
Q 005744 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~ 288 (679)
..+++.|++++|.+..+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|+++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 347899999999998888766 478999999999887 677 347889999999999988888 665 89999999
Q ss_pred CcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceec
Q 005744 289 NCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (679)
Q Consensus 289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (679)
+|.+.. |. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. ++ ++|++|++++|.+.. ++
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLES-LP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSS-CC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCc-hh
Confidence 999888 55 68899999999999998887 678999999998 56777877 55 889999999987752 11
Q ss_pred cCCcCChhhh-hcCCCCceEEeecCCCccCCccc-cccccceeEEE
Q 005744 368 GQSNASLGEL-KQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRIC 411 (679)
Q Consensus 368 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 411 (679)
.....+ .....|+.|++++|.+..+|..+ .+++|+.|++.
T Consensus 197 ----~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 197 ----AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp ----CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred ----hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 111111 11123388999999888887765 45555555543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2e-15 Score=156.32 Aligned_cols=172 Identities=21% Similarity=0.247 Sum_probs=123.5
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhc-CCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE-GMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~ 290 (679)
+.++++++.+..+|..+ .+.++.|++++|.+. .++...|. .+++|++|++++|.++.++ ..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46777777777777644 345778888888776 44544455 7888888888888888775 45788888888888888
Q ss_pred ccCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCccccccCcccc---cCCCCCcEEEccCCcccc
Q 005744 291 LVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVI---SNLTRLEELYMGNSFTQW 364 (679)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l---~~l~~L~~L~l~~~~~~~ 364 (679)
.+.. +..|..+.+|++|++++|.++.+ |..+..+++|++|++++ +.++.+|...+ ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8777 34578888888888888888866 45677888888888887 67777777655 567888888888887642
Q ss_pred eeccCCcCChhhhhcCCC--CceEEeecCCCc
Q 005744 365 KVEGQSNASLGELKQLSR--LTTLEVHIPDAQ 394 (679)
Q Consensus 365 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 394 (679)
.....+..++. |+.|++++|.+.
T Consensus 178 -------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 -------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------cCHHHhhhccHhhcceEEecCCCcc
Confidence 12345566665 377888877654
No 110
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=167.14 Aligned_cols=164 Identities=18% Similarity=0.283 Sum_probs=130.1
Q ss_pred Cceec---cCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHhhccCCCc
Q 005744 8 EDFLD---WLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (679)
Q Consensus 8 ~~~~~---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~W~~~~~~l~~~~~~~ 84 (679)
.+|++ ++|+.+||++||.+.++.. .....+.+++|+++|+|+||||+.+|+.|+.+. ..|+.+++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 45666 4899999999999999752 223356789999999999999999999998653 47999999987654322
Q ss_pred ccc-----cccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHH
Q 005744 85 IQG-----MDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLK 159 (679)
Q Consensus 85 ~~~-----~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~ 159 (679)
+.. ......++..||+.||.+ .|.||+++|+||+|+.|+.+.+...|.+++ ..+.+++++|+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~ 419 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFV 419 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHHH
Confidence 211 112367899999999998 899999999999999999999999996542 12456788999
Q ss_pred hccccccC--CCCCceEehhhHHHHHHHHH
Q 005744 160 SASLLFDG--DSEDHAKMHRIIHAIAVSIA 187 (679)
Q Consensus 160 ~~~~~~~~--~~~~~~~mhdli~~l~~~~~ 187 (679)
++++++.. +....|+||+++++++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999743 23447999999999998773
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=3.4e-15 Score=141.66 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=135.1
Q ss_pred ccchhhhhhhhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc
Q 005744 198 VADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275 (679)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 275 (679)
+..+..+|....+++++|++++|.+..++... .+++|++|++++|.+. .++...|..+++|++|++++|.++.+|..
T Consensus 16 ~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34455566666789999999999998888754 8999999999999887 67777779999999999999999988754
Q ss_pred -ccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCC
Q 005744 276 -LGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (679)
Q Consensus 276 -i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~ 351 (679)
+..+++|++|++++|.+.. + ..++++++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence 7899999999999999988 4 4589999999999999999988876 78899999999999532 345678
Q ss_pred CcEEEccCCccccee
Q 005744 352 LEELYMGNSFTQWKV 366 (679)
Q Consensus 352 L~~L~l~~~~~~~~~ 366 (679)
|+.|++..+.+.+.+
T Consensus 167 l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 167 IRYLSEWINKHSGVV 181 (208)
T ss_dssp THHHHHHHHHCTTTB
T ss_pred HHHHHHHHHhCCcee
Confidence 899988888766433
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=7.2e-15 Score=152.11 Aligned_cols=163 Identities=25% Similarity=0.339 Sum_probs=94.4
Q ss_pred ccchhhhhhhhcCCCeEEEccCCCcccCCccc---CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744 198 VADLKEELDKIDEAPTAISIPFRGIYELPERL---GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 274 (679)
+..+..+|...+..++.|++++|.+..++... .+++|++|++++|.+. .++...|..+++|++|+|++|.++.+|.
T Consensus 27 ~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 27 KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp SSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 34445555544555666666666665555432 4566666666666655 3333334666666666666666665533
Q ss_pred -cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchhh----hcCCCCCEEcccCCccccccCccccc
Q 005744 275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPREI----GQLTCLKLLDLSNCSKLKEIRPNVIS 347 (679)
Q Consensus 275 -~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~l~ 347 (679)
.+..+++|++|+|++|.+.. +..|.++++|++|++++|.++.+|..+ ..+++|++|++++ +.++.+|...+.
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~ 184 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQ 184 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhh
Confidence 45666666666666666655 455666666666666666666666553 4566666666666 455666655455
Q ss_pred CCCC--CcEEEccCCcc
Q 005744 348 NLTR--LEELYMGNSFT 362 (679)
Q Consensus 348 ~l~~--L~~L~l~~~~~ 362 (679)
.++. |+.|++++|.+
T Consensus 185 ~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HSCHHHHTTEECCSSCE
T ss_pred hccHhhcceEEecCCCc
Confidence 5554 35566666544
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=2.8e-16 Score=164.60 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=40.2
Q ss_pred CCcceeeeeeccCCcccCCCch---hhcCCCCccEEEeCCCcCCc----CCccc-------cCCcCCCEEEcCCcccCC-
Q 005744 230 GFLKLKLFLFFTENLSLQIPDP---FFEGMTELRVLDLTGFRFHS----LPSSL-------GCLINLRTLSLENCLVVD- 294 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~----lp~~i-------~~l~~L~~L~L~~~~~~~- 294 (679)
.+++|++|++++|.+....+.. .+..+++|++|++++|.+.. +|..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4555555555555544322211 12445555555555543332 22222 345555555555555443
Q ss_pred -----cccccCCCCCcEEEecCCCCC
Q 005744 295 -----VAIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 295 -----~~~i~~L~~L~~L~l~~~~l~ 315 (679)
+..+.++++|++|++++|.++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 223444555555555555443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=9.3e-15 Score=143.83 Aligned_cols=148 Identities=21% Similarity=0.255 Sum_probs=131.1
Q ss_pred hhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEE
Q 005744 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 286 (679)
....+++.|++++|.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+|.... .+|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 456789999999999999985558999999999999987 4555 6899999999999999999886444 9999999
Q ss_pred cCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
+++|.+..++.++.+++|++|++++|+++.+| .++.+++|++|++++ +.++.++ .+..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCEEeCCCCccc
Confidence 99999998778999999999999999999997 699999999999999 6777773 3899999999999998764
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=3.7e-16 Score=161.98 Aligned_cols=175 Identities=13% Similarity=0.141 Sum_probs=83.5
Q ss_pred EEccCCCccc-CCcccCC-cceeeeeeccCCcccCCCc----hhhcCCC-CccEEEeCCCcCCcC-CccccCC-----cC
Q 005744 215 ISIPFRGIYE-LPERLGF-LKLKLFLFFTENLSLQIPD----PFFEGMT-ELRVLDLTGFRFHSL-PSSLGCL-----IN 281 (679)
Q Consensus 215 l~l~~~~~~~-l~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l-----~~ 281 (679)
..++.+.+.. +|..... ++|++|++++|.+.+ .+. ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3455555543 2333333 336666666666542 332 2345555 666666666666543 3334433 66
Q ss_pred CCEEEcCCcccCC--ccc----ccCC-CCCcEEEecCCCCCccchh-----hhc-CCCCCEEcccCCccccccCcc----
Q 005744 282 LRTLSLENCLVVD--VAI----IGDL-KKLEILSLKHSSIEQLPRE-----IGQ-LTCLKLLDLSNCSKLKEIRPN---- 344 (679)
Q Consensus 282 L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~l~~lp~~---- 344 (679)
|++|++++|.+.. +.. +..+ ++|++|++++|.++..+.. +.. .++|++|++++ +.++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHH
Confidence 6666666666554 222 3333 5666666666666544321 222 24666666666 333322111
Q ss_pred cccCCC-CCcEEEccCCcccceeccCCcCChhhhhcC-CCCceEEeecCCCc
Q 005744 345 VISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQ 394 (679)
Q Consensus 345 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~ 394 (679)
.+..++ +|++|++++|.+..... ......+... ++|+.|++++|.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHhcCCccccEeeecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCC
Confidence 123333 56666666665432110 0011123333 35666666655544
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.9e-15 Score=156.68 Aligned_cols=202 Identities=11% Similarity=0.181 Sum_probs=147.1
Q ss_pred hhcCCCeEEEccCCCcccCCc-----cc-CCc-ceeeeeeccCCcccCCCchhhcCC-----CCccEEEeCCCcCCcCCc
Q 005744 207 KIDEAPTAISIPFRGIYELPE-----RL-GFL-KLKLFLFFTENLSLQIPDPFFEGM-----TELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~lp~ 274 (679)
....++++|++++|.+...+. .+ .++ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.++..+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHH
Confidence 455679999999999987764 33 677 89999999999876555443 443 999999999999986543
Q ss_pred c-----ccCC-cCCCEEEcCCcccCC--ccc----ccCC-CCCcEEEecCCCCC-----ccchhhhcCC-CCCEEcccCC
Q 005744 275 S-----LGCL-INLRTLSLENCLVVD--VAI----IGDL-KKLEILSLKHSSIE-----QLPREIGQLT-CLKLLDLSNC 335 (679)
Q Consensus 275 ~-----i~~l-~~L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~l~~~ 335 (679)
. +..+ ++|++|++++|.+.. +.. +..+ .+|++|++++|.++ .++..+..++ +|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~- 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG- 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-
Confidence 2 5555 899999999999877 333 4443 69999999999988 5566677776 999999999
Q ss_pred ccccccCccc----ccCC-CCCcEEEccCCcccceeccCCcCChhhhhcC-CCCceEEeecCCCccCCccc------ccc
Q 005744 336 SKLKEIRPNV----ISNL-TRLEELYMGNSFTQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDL------VFV 403 (679)
Q Consensus 336 ~~l~~lp~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~------~~~ 403 (679)
+.++...... +... ++|++|++++|.+..... ......+... ++|+.|++++|.+...+... .++
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 4666665432 3445 599999999998753110 1123455553 59999999999887654321 345
Q ss_pred ccceeEEEeC
Q 005744 404 ELERFRICIG 413 (679)
Q Consensus 404 ~L~~L~l~~~ 413 (679)
+|+.|++..+
T Consensus 254 ~L~~L~L~~n 263 (362)
T 3goz_A 254 HLQTVYLDYD 263 (362)
T ss_dssp TCSEEEEEHH
T ss_pred CccEEEeccC
Confidence 5666666544
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.5e-14 Score=138.27 Aligned_cols=148 Identities=20% Similarity=0.283 Sum_probs=118.7
Q ss_pred eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecC
Q 005744 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (679)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (679)
+.++++++.+. .+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.+.. +..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56777777765 677654 2688999999999988754 78889999999999998887 67899999999999999
Q ss_pred CCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeec
Q 005744 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (679)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 390 (679)
|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+.... ...+..+++|+.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-------KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-------TTTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-------HHHHhCCCCCCEEEeCC
Confidence 999988876 57899999999998 6788887777888999999999998775322 23466788888888888
Q ss_pred CCCc
Q 005744 391 PDAQ 394 (679)
Q Consensus 391 ~~~~ 394 (679)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 7653
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=2.5e-14 Score=155.28 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=139.9
Q ss_pred chhhhhhhhcCCCeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCC
Q 005744 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (679)
Q Consensus 200 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l 279 (679)
.+..+|....++++.|++++|.+..+| ..+++|++|++++|.+.+ +|. + .. +|++|++++|.++.+|. .+
T Consensus 70 ~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l 139 (571)
T 3cvr_A 70 NLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LP 139 (571)
T ss_dssp CCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CC
T ss_pred CCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cC
Confidence 344556545678999999999999999 458999999999999885 887 4 44 99999999999999988 68
Q ss_pred cCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCC------
Q 005744 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL------ 352 (679)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L------ 352 (679)
++|++|++++|.+.. |. .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~ 208 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEET 208 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------C
T ss_pred ccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhccccc
Confidence 999999999999988 55 67899999999999999998 66 8999999999 67888887 444 67
Q ss_pred -cEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCcc
Q 005744 353 -EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (679)
Q Consensus 353 -~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (679)
+.|++++|.+. ..+..+..+++|+.|++++|.+..
T Consensus 209 L~~L~Ls~N~l~--------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 209 EIFFRCRENRIT--------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CEEEECCSSCCC--------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ceEEecCCCcce--------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999875 334567779999999999998754
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=136.16 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=121.8
Q ss_pred eeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC--ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEec
Q 005744 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK 310 (679)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 310 (679)
++++++++.+. .+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.+.. +..|+++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888876 678654 346789999999999874 348899999999999999888 4579999999999999
Q ss_pred CCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEee
Q 005744 311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (679)
Q Consensus 311 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 389 (679)
+|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+... ....+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV-------APGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB-------CTTTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE-------CHHHhcCCCCCCEEEec
Confidence 9999988765 88999999999999 678888766689999999999999977532 23467788899999998
Q ss_pred cCCCc
Q 005744 390 IPDAQ 394 (679)
Q Consensus 390 ~~~~~ 394 (679)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 88654
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=3.3e-14 Score=136.82 Aligned_cols=139 Identities=21% Similarity=0.287 Sum_probs=123.0
Q ss_pred cccchhhhhhhhcCCCeEEEccCCCcccCCc-cc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCc
Q 005744 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (679)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 274 (679)
.+..+..+|...+.++++|++++|.+..++. .+ .+++|++|++++|.+. .+|...|..+++|++|++++|.++.+|.
T Consensus 27 ~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 27 RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp TTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccCh
Confidence 4556677777777999999999999988754 34 8999999999999985 7777778999999999999999999865
Q ss_pred c-ccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCc
Q 005744 275 S-LGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCS 336 (679)
Q Consensus 275 ~-i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 336 (679)
. +..+++|++|++++|.+.. |..+.++++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4 6899999999999999999 8999999999999999999999886 48899999999999954
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=4.3e-14 Score=129.03 Aligned_cols=138 Identities=27% Similarity=0.250 Sum_probs=90.8
Q ss_pred CCCccEEEeCCCcCC--cCCccccCCcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCc-cchhhhcCCCCCEEcc
Q 005744 256 MTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDL 332 (679)
Q Consensus 256 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 332 (679)
.++|++|++++|.++ .+|..+..+++|++|++++|.+.....++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 456777777777776 6676667777777777777776666667777777777777777776 6666666777777777
Q ss_pred cCCccccccCc-ccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCc
Q 005744 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (679)
Q Consensus 333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 398 (679)
++ +.++.+|. ..++.+++|++|++++|.+..... .....+..+++|+.|+++.|....+|.
T Consensus 103 s~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhccc
Confidence 77 45666542 336777777777777776542100 001256667777777777776665554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.1e-16 Score=174.63 Aligned_cols=191 Identities=20% Similarity=0.225 Sum_probs=139.5
Q ss_pred cCCCeEEEccCCCcccCCccc-CCcceeeeeeccCC-------------cccCCCchhhcCCCCccEEE-eCCCcCCcCC
Q 005744 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTEN-------------LSLQIPDPFFEGMTELRVLD-LTGFRFHSLP 273 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~l~~lp 273 (679)
.+.+++|++++|.++.+|..+ .+++|+.|++.+|. ..+..| ..++.+++|+.|+ ++.+.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcccchhh
Confidence 456778888888888888877 78888888875543 233333 3447777788777 5554433222
Q ss_pred c------cccC--CcCCCEEEcCCcccCCcccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCccc
Q 005744 274 S------SLGC--LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV 345 (679)
Q Consensus 274 ~------~i~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~ 345 (679)
. .+.. ...|++|++++|.+...+.++.+++|++|++++|.++.+|..++++++|++|++++ +.++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-
Confidence 1 1111 12588999999988883348999999999999999999999999999999999998 6777887 3
Q ss_pred ccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc-----cccccceeE
Q 005744 346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-----VFVELERFR 409 (679)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 409 (679)
++++++|++|++++|.+.... .+..+..+++|+.|++++|.+...+... .+++|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 889999999999998775211 1467888899999999999888776654 356666654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.1e-14 Score=129.97 Aligned_cols=133 Identities=19% Similarity=0.175 Sum_probs=93.2
Q ss_pred hhcCCCeEEEccCCCcc--cCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-CCccccCCcCC
Q 005744 207 KIDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINL 282 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L 282 (679)
..++++++|++++|.+. .+|..+ .+++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+.++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34567888888888876 677664 677777777777776533 234677777777777777776 56666667777
Q ss_pred CEEEcCCcccCC-c--ccccCCCCCcEEEecCCCCCccch----hhhcCCCCCEEcccCCccccccCc
Q 005744 283 RTLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSNCSKLKEIRP 343 (679)
Q Consensus 283 ~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~ 343 (679)
++|++++|.+.. + ..++.+++|++|++++|.++.+|. .+..+++|++|++++| ...++|.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 777777777766 3 567777777777777777776665 5677777777777773 4455544
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=2.7e-14 Score=127.52 Aligned_cols=12 Identities=0% Similarity=-0.114 Sum_probs=5.2
Q ss_pred CCeEEEccCCCc
Q 005744 211 APTAISIPFRGI 222 (679)
Q Consensus 211 ~l~~l~l~~~~~ 222 (679)
+++++++++|.+
T Consensus 18 ~l~~L~l~~n~l 29 (149)
T 2je0_A 18 DVKELVLDNSRS 29 (149)
T ss_dssp GCSEEECTTCBC
T ss_pred cCeEEEccCCcC
Confidence 344444444444
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=7.5e-14 Score=124.57 Aligned_cols=126 Identities=22% Similarity=0.233 Sum_probs=111.6
Q ss_pred CCcceeeeeeccCCcc-cCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744 230 GFLKLKLFLFFTENLS-LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (679)
..++++.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999987 677764 48999999999999999988 779999999999999999988 566777999999
Q ss_pred EEecCCCCCccc--hhhhcCCCCCEEcccCCccccccCc---ccccCCCCCcEEEcc
Q 005744 307 LSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRP---NVISNLTRLEELYMG 358 (679)
Q Consensus 307 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~l~~L~~L~l~ 358 (679)
|++++|.++.+| ..++.+++|++|++++ +.++.+|+ ..++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999876 7899999999999999 57888876 558899999999875
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=3e-13 Score=126.15 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=90.1
Q ss_pred eeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCC
Q 005744 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS 313 (679)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~ 313 (679)
+++++++.+. .+|..+ .++|++|++++|.++.+|..+.++++|++|++++|.+.. +..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555444 455443 246778888888888777778888888888888888777 4567888888888888888
Q ss_pred CCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCccc
Q 005744 314 IEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 314 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
++.+|. .+..+++|++|++++ +.++.+|+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 887765 477788888888887 6677777766777888888888877553
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=3.6e-13 Score=125.70 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=52.0
Q ss_pred CccEEEeCCCcCCcCCcc--ccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcc
Q 005744 258 ELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (679)
Q Consensus 258 ~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 332 (679)
+|++|++++|.++.++.. ++.+++|++|++++|.+.. |..++++++|++|++++|+++.++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 445555555555444332 4455555555555555444 34455555555555555555544432 445555555555
Q ss_pred cCCccccccCcccccCCCCCcEEEccCCcc
Q 005744 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
++ +.++.+++..++.+++|++|++++|.+
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 55 344444333355555555555555544
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.7e-13 Score=154.40 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=101.9
Q ss_pred cCCCeEEEccCCCcccCCccc-CCcceeeeee-----ccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCC
Q 005744 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLF-----FTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINL 282 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L 282 (679)
...++++++.++.+...+... ...+|+.+.+ ..|.+. ++...+..++.|++|+|++|.+..+|..+.++++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 456888999888887666543 3444444333 333332 45566789999999999999999999999999999
Q ss_pred CEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCc
Q 005744 283 RTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (679)
Q Consensus 283 ~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~ 361 (679)
++|+|++|.+.. |..|++|++|++|+|++|.++.+|..|+.|++|++|+|++ +.++.+|.. |+++++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCc
Confidence 999999999998 8889999999999999999999999999999999999999 578899987 9999999999999998
Q ss_pred ccc
Q 005744 362 TQW 364 (679)
Q Consensus 362 ~~~ 364 (679)
+..
T Consensus 328 l~~ 330 (727)
T 4b8c_D 328 LEK 330 (727)
T ss_dssp CCS
T ss_pred cCC
Confidence 764
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=9.3e-14 Score=127.80 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-ccc-ccCCCCCcEE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAI-IGDLKKLEIL 307 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~-i~~L~~L~~L 307 (679)
.+++|++|++++|.+. .+|. +....++|++|++++|.++.+ ..+..+++|++|++++|.+.. |+. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4445555555555444 2322 212222555555555555544 345555555555555555554 322 2555555555
Q ss_pred EecCCCCCccch--hhhcCCCCCEEcccCCccccccCcc---cccCCCCCcEEEccCC
Q 005744 308 SLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPN---VISNLTRLEELYMGNS 360 (679)
Q Consensus 308 ~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~l~~L~~L~l~~~ 360 (679)
++++|.++.+|. .+..+++|++|++++ +.+..+|.. .++.+++|+.|++++|
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 555555555554 455555555555555 334444432 2444555555555444
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=4.3e-13 Score=125.16 Aligned_cols=123 Identities=21% Similarity=0.341 Sum_probs=108.4
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 291 (679)
+.++++++.+..+|..+. .++++|++++|.+.+..+..+|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 689999999999998663 39999999999987544445679999999999999999987 7889999999999999999
Q ss_pred cCC--cccccCCCCCcEEEecCCCCCcc-chhhhcCCCCCEEcccCCc
Q 005744 292 VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCS 336 (679)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 336 (679)
+.. +..++++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 988 56699999999999999999966 6679999999999999954
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.1e-13 Score=124.29 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=111.2
Q ss_pred hcCCCeEEEccCCCcccCCcccCCc-ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccc-cCCcCCCEE
Q 005744 208 IDEAPTAISIPFRGIYELPERLGFL-KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTL 285 (679)
Q Consensus 208 ~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 285 (679)
.+.+++.|++++|.+..++....+. +|++|++++|.+.+ ++ .+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4678999999999999887655554 99999999999875 32 3689999999999999999998665 899999999
Q ss_pred EcCCcccCC-cc--cccCCCCCcEEEecCCCCCccchh----hhcCCCCCEEcccCCc
Q 005744 286 SLENCLVVD-VA--IIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCS 336 (679)
Q Consensus 286 ~L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 336 (679)
++++|.+.. +. .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999988 55 799999999999999999999885 8999999999999853
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.9e-12 Score=120.64 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=107.3
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~ 291 (679)
+.++++++.+..+|..+ .++|++|++++|.+. .+|. .|..+++|++|++++|.++.++ ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57889999999998765 468999999999987 7885 4589999999999999999885 569999999999999999
Q ss_pred cCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCc
Q 005744 292 VVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS 336 (679)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 336 (679)
+.. +..|+.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 988 56799999999999999999999875 7889999999999853
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=9.2e-14 Score=156.55 Aligned_cols=130 Identities=20% Similarity=0.255 Sum_probs=98.2
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (679)
.+++|++|++++|.+. .+|..++ .+++|++|+|++|.++.+|..|+++++|++|+|++|.+.. |..|++|.+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 6788888888888876 7777764 7888888888888888888888888888888888888887 78888888888888
Q ss_pred ecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCC-CCcEEEccCCcc
Q 005744 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT-RLEELYMGNSFT 362 (679)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~-~L~~L~l~~~~~ 362 (679)
|++|.++.+|..|++|++|++|+|++ +.+...++..+..+. .+..+++.+|.+
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcc
Confidence 88888888888888888888888888 455544444343321 112245555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=8.8e-15 Score=137.55 Aligned_cols=132 Identities=24% Similarity=0.318 Sum_probs=85.0
Q ss_pred hcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEc
Q 005744 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (679)
Q Consensus 253 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 331 (679)
+..+++|++|++++|.++.+| .+.++++|++|++++|.+.. |..++.+++|++|++++|.++.+| .++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 366777777777777777777 67777777777777777766 666666677777777777777766 577777777777
Q ss_pred ccCCccccccCc-ccccCCCCCcEEEccCCcccceeccC---CcCChhhhhcCCCCceEE
Q 005744 332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQ---SNASLGELKQLSRLTTLE 387 (679)
Q Consensus 332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~ 387 (679)
+++ +.++.++. ..+..+++|++|++++|.+....+.. .......+..+++|+.|+
T Consensus 122 l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777 45665543 33667777777777777554221100 000112256666777665
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=4.7e-12 Score=116.48 Aligned_cols=106 Identities=27% Similarity=0.433 Sum_probs=61.3
Q ss_pred CCccEEEeCCCcCCcCCc-cccCCcCCCEEEcCCcccCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcc
Q 005744 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (679)
Q Consensus 257 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 332 (679)
++|++|++++|.++.+|. .++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 455555666555555543 24555566666666665555 2 3345666666666666666655543 456666666666
Q ss_pred cCCccccccCcccccCCCCCcEEEccCCccc
Q 005744 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
++ +.++.+|+..+..+++|++|++++|.+.
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66 4555666554556666666666666543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=6.3e-12 Score=115.59 Aligned_cols=122 Identities=22% Similarity=0.347 Sum_probs=86.3
Q ss_pred CeEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCc
Q 005744 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENC 290 (679)
Q Consensus 212 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~ 290 (679)
.+.++++++.+..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 356777777777776543 367777777777765 45555567777788888877777776543 577777888888777
Q ss_pred ccCC-c-ccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCC
Q 005744 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (679)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 335 (679)
.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 7777 3 3467777788888877777777765 366777777777774
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=5.5e-12 Score=137.62 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=134.9
Q ss_pred cchhhhhh--hhcCCCeEEEccCCC-------------c-ccCCccc-CCcceeeee-eccCCcccCCCchh-----hc-
Q 005744 199 ADLKEELD--KIDEAPTAISIPFRG-------------I-YELPERL-GFLKLKLFL-FFTENLSLQIPDPF-----FE- 254 (679)
Q Consensus 199 ~~~~~~~~--~~~~~l~~l~l~~~~-------------~-~~l~~~~-~~~~L~~L~-l~~~~~~~~~~~~~-----~~- 254 (679)
+.+..+|. ..+.+++.|++++|. . ...|..+ .+++|+.|+ ++.|.+. .++.-. +.
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~ 437 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLK 437 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhhhhhhcccccc
Confidence 34556665 566778888886653 1 2233333 677788877 4433211 111100 00
Q ss_pred -CCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC-cccccCCCCCcEEEecCCCCCccchhhhcCCCCCEEcc
Q 005744 255 -GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332 (679)
Q Consensus 255 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 332 (679)
....|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| .++++++|++|++
T Consensus 438 l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 438 MEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp HHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred cCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 11358999999999999997 9999999999999999999 899999999999999999999999 8999999999999
Q ss_pred cCCccccccC-cccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceEEe
Q 005744 333 SNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (679)
Q Consensus 333 ~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 388 (679)
++ +.++.++ +..++.+++|++|++++|.+....+ ....-+..+++|+.|++
T Consensus 516 s~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred CC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence 99 6788884 4449999999999999998764321 22233455888888753
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.1e-13 Score=129.94 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=115.8
Q ss_pred CCeEEEccCC--CcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEc
Q 005744 211 APTAISIPFR--GIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (679)
Q Consensus 211 ~l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 287 (679)
.++...+.+. .++.+|..+ .+++|++|++++|.+.+ +| .+..+++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3444555443 445555555 89999999999998874 77 358899999999999999999998888899999999
Q ss_pred CCcccCCcccccCCCCCcEEEecCCCCCccch--hhhcCCCCCEEcccCCccccccCc----------ccccCCCCCcEE
Q 005744 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRP----------NVISNLTRLEEL 355 (679)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~----------~~l~~l~~L~~L 355 (679)
++|.+...+.++++++|++|++++|.++.+|. .+..+++|++|++++| .+...++ ..+..+++|+.|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999984479999999999999999998875 7899999999999995 4443322 236789999999
Q ss_pred E
Q 005744 356 Y 356 (679)
Q Consensus 356 ~ 356 (679)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=3.2e-11 Score=110.25 Aligned_cols=101 Identities=24% Similarity=0.403 Sum_probs=77.5
Q ss_pred cEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCc
Q 005744 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS 336 (679)
Q Consensus 260 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 336 (679)
+.++++++.++.+|..+. .+|++|++++|.+.. +..++++++|++|++++|+++.+|.. +.++++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 677888888877777664 778888888888777 45677888888888888888877765 46788888888887 6
Q ss_pred cccccCcccccCCCCCcEEEccCCccc
Q 005744 337 KLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
.++.+|+..++.+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777777766777888888888877654
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=3.3e-11 Score=109.71 Aligned_cols=102 Identities=24% Similarity=0.359 Sum_probs=81.1
Q ss_pred ccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchh-hhcCCCCCEEcccCC
Q 005744 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (679)
Q Consensus 259 L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 335 (679)
.++++++++.++.+|..+. .+|++|++++|.+.. +..++++++|++|++++|+++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4678888888888887664 778888888888877 56688888888888888888888775 47888888888888
Q ss_pred ccccccCcccccCCCCCcEEEccCCccc
Q 005744 336 SKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
+.++.+|+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6778887776788888888888888654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=5.9e-11 Score=108.45 Aligned_cols=103 Identities=14% Similarity=0.227 Sum_probs=47.4
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 291 (679)
+.++++++.+..+|..+. ++|++|++++|.+.+ +++..|.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554332 445555555554442 2222234455555555555555444433 2444444444444444
Q ss_pred cCC-cc-cccCCCCCcEEEecCCCCCcc
Q 005744 292 VVD-VA-IIGDLKKLEILSLKHSSIEQL 317 (679)
Q Consensus 292 ~~~-~~-~i~~L~~L~~L~l~~~~l~~l 317 (679)
+.. +. .+..+++|++|++++|.+...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 444 22 244444444444444444433
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=8.5e-11 Score=119.79 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=46.0
Q ss_pred cCCCeEEEccCCCcc--------------------cCCccc--C--------CcceeeeeeccCCcccCCCchhhcCCCC
Q 005744 209 DEAPTAISIPFRGIY--------------------ELPERL--G--------FLKLKLFLFFTENLSLQIPDPFFEGMTE 258 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 258 (679)
..+++.|++++|.+. .+|... + +++|+.+.+.. .+. .+++..|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 678999999998886 222222 4 56666666655 333 455555666666
Q ss_pred ccEEEeCCCcCCcC-CccccCCcCCCEEEcCC
Q 005744 259 LRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (679)
Q Consensus 259 L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~ 289 (679)
|+.|++++|.+..+ +..|..+.++.++....
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666665554 33455555555554433
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=7.4e-11 Score=120.22 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=61.4
Q ss_pred CcceeeeeeccCCcccCCCchhhcC-CCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCCcccccC--------C
Q 005744 231 FLKLKLFLFFTENLSLQIPDPFFEG-MTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD--------L 301 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~--------L 301 (679)
+.+++.|.++++-....+ .. +.. +++|++|||++|.+......-+.++.++++.+..+.+. ...|.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHH-HH-HHHhhccCeEEecCcceeEEecCccccccccccccccccccC-HHHhccccccccccc
Confidence 456666776653111000 11 222 56677777777776621111112222444444444221 233444 6
Q ss_pred CCCcEEEecCCCCCccchh-hhcCCCCCEEcccCCccccccCcccccCCCCCcEEEc
Q 005744 302 KKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (679)
Q Consensus 302 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 357 (679)
.+|+.|++.. .++.++.. |..+++|+.|++.+ +.+..+++..|....++..+..
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECT
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecC
Confidence 6666666666 66666543 56666666666666 4555566555555555554443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=1.5e-10 Score=105.37 Aligned_cols=101 Identities=19% Similarity=0.336 Sum_probs=46.0
Q ss_pred eEEEccCCCcccCCcccCCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCCcc-ccCCcCCCEEEcCCcc
Q 005744 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL 291 (679)
Q Consensus 213 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 291 (679)
+.++++++.+..+|..+ .++|++|++++|.+.+ ++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 45555555555555433 2444455555444442 2222234444555555555544444332 3444444444444444
Q ss_pred cCC-c-ccccCCCCCcEEEecCCCCC
Q 005744 292 VVD-V-AIIGDLKKLEILSLKHSSIE 315 (679)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~ 315 (679)
+.. + ..+.++++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444 2 22444444444444444433
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=5.1e-08 Score=101.43 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=87.9
Q ss_pred CcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEE
Q 005744 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (679)
+..++.+.+..+ + ..++...|.+. +|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .+.. ...|.++.+|+.+
T Consensus 112 ~~~l~~i~ip~~-i-~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-V-KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-C-CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-c-CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345555555432 2 25566666765 6888888766 66664 44555 4688888876 4444 5678888899999
Q ss_pred EecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (679)
Q Consensus 308 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (679)
++.+|+++.+|...-...+|+.+.+.. .++.++...|..+++|+.+.+..+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred ecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence 998888888887755578888888874 478888877888888888888654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=4.6e-09 Score=107.78 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=61.3
Q ss_pred EEeCCC-cCCcCCccccCCcCCCEEEcCC-cccCC--cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCc
Q 005744 262 LDLTGF-RFHSLPSSLGCLINLRTLSLEN-CLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCS 336 (679)
Q Consensus 262 L~l~~~-~l~~lp~~i~~l~~L~~L~L~~-~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 336 (679)
++++++ .++.+|. +..+.+|++|+|++ |.+.. +..|++|.+|++|+|++|+++.+|. .|++|++|++|+|++ +
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-C
Confidence 455665 5666666 66666666666664 66655 2456666666666666666665544 356666666666666 5
Q ss_pred cccccCcccccCCCCCcEEEccCCccc
Q 005744 337 KLKEIRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
.++.+|+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 56666665444444 667776666543
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=4.7e-08 Score=101.68 Aligned_cols=256 Identities=11% Similarity=0.134 Sum_probs=157.3
Q ss_pred CCCeEEEccCCCcccCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEc
Q 005744 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSL 287 (679)
Q Consensus 210 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L 287 (679)
..+..+.+.. .+..++... .-.+|+.+.+..+ + ..++...|.+. +|+.+.+.+ .++.++ ..|.+|.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4555555543 344444433 2346888887655 3 35666667774 688888886 566664 56888888899988
Q ss_pred CCcccCC-cccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccce
Q 005744 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (679)
.+|.+.. +...-...+|+.+.+.. .++.++. .+.++++|+.+.+.. .++.++...|.+ .+|+.+.+..+ +..
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~- 261 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN- 261 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE-
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE-
Confidence 8888777 43333357888888874 4776665 477888888888875 467777777777 78888887543 211
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCCc-----cCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceech
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQ-----VMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~ 440 (679)
.....+.++++|+.+.+..+... .++.. .+..+.+|+.+.|. +....++.
T Consensus 262 ------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------aF~~c~~L~~l~l~-~~i~~I~~ 316 (401)
T 4fdw_A 262 ------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------CLEGCPKLARFEIP-ESIRILGQ 316 (401)
T ss_dssp ------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------TTTTCTTCCEECCC-TTCCEECT
T ss_pred ------EChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------HhhCCccCCeEEeC-CceEEEhh
Confidence 12245677888888888766543 22222 23344445555554 22334444
Q ss_pred hHHHHhhcccccccccccCccccc-ccccchhhccccceEeeecCCCeeEEEeCCCcccccc-ccceeeccc
Q 005744 441 GMKMLLKRTEDLHLDELAGFKNVV-HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHN 510 (679)
Q Consensus 441 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~ 510 (679)
..+..+.+|+.+.+..+ +..+. ..| .++ +|+.+.+.++.- ..+.. ..+.+++ .++.|++-.
T Consensus 317 ~aF~~c~~L~~l~lp~~--l~~I~~~aF---~~~-~L~~l~l~~n~~-~~l~~--~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN--VTQINFSAF---NNT-GIKEVKVEGTTP-PQVFE--KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTTTCCSCCEEEECTT--CCEECTTSS---SSS-CCCEEEECCSSC-CBCCC--SSCCCSCTTCCEEEECG
T ss_pred hhhcCCCCccEEEECcc--ccEEcHHhC---CCC-CCCEEEEcCCCC-ccccc--ccccCCCCCccEEEeCH
Confidence 44444667777777543 34443 334 566 888888887742 22221 2223453 677777765
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=3.8e-10 Score=116.36 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=96.6
Q ss_pred hhcCCCeEEEccCCCcccCC-----ccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-----Cc
Q 005744 207 KIDEAPTAISIPFRGIYELP-----ERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-----PS 274 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-----p~ 274 (679)
...+.++.+++++|.+.... ..+ ..++|++|++++|.+.......+...+++|++|++++|.++.. ..
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 45678899999999885422 222 2368888888888765433334444566788888888877632 22
Q ss_pred cc-cCCcCCCEEEcCCcccCC------cccccCCCCCcEEEecCCCCCc-----cchhhhcCCCCCEEcccCCccccccC
Q 005744 275 SL-GCLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR 342 (679)
Q Consensus 275 ~i-~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp 342 (679)
.+ ...++|++|+|++|.+.. ...+...++|++|+|++|.++. ++..+...++|++|++++| .++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence 22 245678888888887654 2334567777777777777662 3445566667777777773 444322
Q ss_pred cc----cccCCCCCcEEEccCCccc
Q 005744 343 PN----VISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 343 ~~----~l~~l~~L~~L~l~~~~~~ 363 (679)
.. .+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1334566777777776553
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.82 E-value=3.9e-10 Score=116.30 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=115.1
Q ss_pred CcceeeeeeccCCcccCCCchh---hc-CCCCccEEEeCCCcCCc--CCccccCCcCCCEEEcCCcccCC--cccc----
Q 005744 231 FLKLKLFLFFTENLSLQIPDPF---FE-GMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD--VAII---- 298 (679)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i---- 298 (679)
.++|+.|++++|.+.......+ +. ..++|++|+|++|.++. +..-...+.+|++|+|++|.+.+ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5679999999998764222221 12 33799999999999863 22223356789999999999876 3333
Q ss_pred -cCCCCCcEEEecCCCCCc-----cchhhhcCCCCCEEcccCCccccccC----cccccCCCCCcEEEccCCcccceecc
Q 005744 299 -GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR----PNVISNLTRLEELYMGNSFTQWKVEG 368 (679)
Q Consensus 299 -~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp----~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (679)
....+|++|++++|.++. ++..+..+++|++|++++| .++... ...+...++|++|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--
Confidence 346889999999999874 5666788999999999994 465432 223667789999999999774211
Q ss_pred CCcCChhhhhcCCCCceEEeecCCCcc
Q 005744 369 QSNASLGELKQLSRLTTLEVHIPDAQV 395 (679)
Q Consensus 369 ~~~~~~~~l~~l~~L~~L~l~~~~~~~ 395 (679)
.......+...++|+.|++++|.+..
T Consensus 228 -~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 -ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 01233456678899999999997754
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.4e-08 Score=104.08 Aligned_cols=86 Identities=22% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCCchhhcCCCCccEEEeCC-CcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCCCCccchhhh
Q 005744 247 QIPDPFFEGMTELRVLDLTG-FRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPREIG 322 (679)
Q Consensus 247 ~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~ 322 (679)
.+|. +..+++|++|+|++ |.++.+| ..|+++.+|++|+|++|.+.. +..|++|++|++|+|++|+++.+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3454 35555556666654 5555554 345555666666666665555 3345556666666666666665555433
Q ss_pred cCCCCCEEcccC
Q 005744 323 QLTCLKLLDLSN 334 (679)
Q Consensus 323 ~L~~L~~L~l~~ 334 (679)
....|++|++.+
T Consensus 101 ~~~~L~~l~l~~ 112 (347)
T 2ifg_A 101 QGLSLQELVLSG 112 (347)
T ss_dssp CSCCCCEEECCS
T ss_pred ccCCceEEEeeC
Confidence 333366666655
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=9e-07 Score=92.29 Aligned_cols=299 Identities=13% Similarity=0.112 Sum_probs=135.3
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC-cccccCCCCCcEE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEIL 307 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 307 (679)
++.+|+.+.+..+ + ..+.+..|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+-..- ...|.+...+...
T Consensus 69 ~c~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 5667777776532 2 2455566677777777777643 45442 345566666665554331111 2333333322222
Q ss_pred EecCCCCCccc-hhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccCCcCChhhhhcCCCCceE
Q 005744 308 SLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386 (679)
Q Consensus 308 ~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 386 (679)
... .+..+. ..+.++.+|+.+.+.+ .+..++...+..+.+|+.+.+..+-. .. .-..+.+...|+.+
T Consensus 146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~~~--~I------~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 146 IPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRNLK--II------RDYCFAECILLENM 213 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTTCC--EE------CTTTTTTCTTCCBC
T ss_pred cCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCCce--Ee------Cchhhcccccccee
Confidence 111 122221 2355666666666653 34455555566666666666544311 11 01223344444444
Q ss_pred EeecCCCccCCcc-ccccccceeEEEeCC---cccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCccc
Q 005744 387 EVHIPDAQVMPQD-LVFVELERFRICIGD---VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN 462 (679)
Q Consensus 387 ~l~~~~~~~~~~~-~~~~~L~~L~l~~~~---~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 462 (679)
.+..+... +... ....+|+.+.+.... ....+..+..++.+.+..+. ..+..........++.+...... .
T Consensus 214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i 288 (394)
T 4fs7_A 214 EFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---V 288 (394)
T ss_dssp CCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---E
T ss_pred ecCCCceE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---e
Confidence 44322111 1111 123344544442111 01123344555555554321 12222222223334433332211 1
Q ss_pred ccccccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecC
Q 005744 463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542 (679)
Q Consensus 463 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c 542 (679)
....+ ..+.+|+.+.+.++ ++.+.. ..+..+.+|+.+.|.+ +++.+....+. .+.+|+.+.+..
T Consensus 289 ~~~~F---~~~~~L~~i~l~~~--i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~aF~------~c~~L~~i~lp~- 352 (394)
T 4fs7_A 289 PEKTF---YGCSSLTEVKLLDS--VKFIGE--EAFESCTSLVSIDLPY--LVEEIGKRSFR------GCTSLSNINFPL- 352 (394)
T ss_dssp CTTTT---TTCTTCCEEEECTT--CCEECT--TTTTTCTTCCEECCCT--TCCEECTTTTT------TCTTCCEECCCT-
T ss_pred ccccc---cccccccccccccc--cceech--hhhcCCCCCCEEEeCC--cccEEhHHhcc------CCCCCCEEEECc-
Confidence 11122 45666777666532 444432 2334556677776643 35555443332 556677776643
Q ss_pred CCccccccHHHHHHhhcCcEEEEc
Q 005744 543 HRVKHLFPFSLVKNLLQLQKVKVT 566 (679)
Q Consensus 543 ~~L~~l~~~~~~~~l~~L~~L~i~ 566 (679)
.++.+. ...+.+|++|+.+++.
T Consensus 353 -~l~~I~-~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 353 -SLRKIG-ANAFQGCINLKKVELP 374 (394)
T ss_dssp -TCCEEC-TTTBTTCTTCCEEEEE
T ss_pred -cccEeh-HHHhhCCCCCCEEEEC
Confidence 355553 2345566677777664
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=7.9e-07 Score=92.70 Aligned_cols=298 Identities=16% Similarity=0.098 Sum_probs=187.1
Q ss_pred hhcCCCeEEEccCCCcccCCccc--CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcC-CccccCCcCCC
Q 005744 207 KIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLR 283 (679)
Q Consensus 207 ~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~ 283 (679)
....+++.+.+.. .+..+.... ++++|+.+.+..+ + ..++...|.++..|+.+.+..+ +..+ ...+.++..+.
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 3457788898864 466676543 7899999999754 2 3677777899999998877654 4444 34455665444
Q ss_pred EEEcCCcccCCcccccCCCCCcEEEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744 284 TLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 284 ~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
..............|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .++.++...+.+...|+.+.+..+..
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCce
Confidence 44444333333567888899999998764 455554 467888999988875 36777777788888888887665432
Q ss_pred cceeccCCcCChhhhhcCCCCceEEeecCCCccCCccc--cccccceeEEEeCCc---ccCCCCCCCcceEEecCCCcce
Q 005744 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDV---WSWSDGYETSKTLKLQLNNSTY 437 (679)
Q Consensus 363 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~l~~L~L~~~~~~~ 437 (679)
. .. ........|+.+.+... ...+.... ....|+.+.+..... ...+..+..++....... .
T Consensus 221 ~--i~-------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~---~ 287 (394)
T 4fs7_A 221 Y--LG-------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV---I 287 (394)
T ss_dssp E--EC-------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS---E
T ss_pred E--ee-------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCce---e
Confidence 1 11 11122346666666422 22333222 456666666643321 123455666666655432 2
Q ss_pred echhHHHHhhcccccccccccCcccccc-cccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccc
Q 005744 438 LGYGMKMLLKRTEDLHLDELAGFKNVVH-ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEK 516 (679)
Q Consensus 438 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 516 (679)
.+......+.+|+.+.+.+. ++.++. .| .++.+|+.+.+.. .++.+.. ..+.++.+|+.+.+.. +++.
T Consensus 288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~--~aF~~c~~L~~i~lp~--~l~~ 356 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAF---ESCTSLVSIDLPY--LVEEIGK--RSFRGCTSLSNINFPL--SLRK 356 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT--CCEECTTTT---TTCTTCCEECCCT--TCCEECT--TTTTTCTTCCEECCCT--TCCE
T ss_pred eccccccccccccccccccc--cceechhhh---cCCCCCCEEEeCC--cccEEhH--HhccCCCCCCEEEECc--cccE
Confidence 34333434677888887643 444443 34 6788999999864 3666643 3446778899998864 4777
Q ss_pred cccCcccCCCCccccCCccEEEEec
Q 005744 517 VCDGKVRLNEDDKSFSNLRIIKVEG 541 (679)
Q Consensus 517 ~~~~~~~~~~~~~~l~~L~~L~l~~ 541 (679)
+....+. .+++|+.+++..
T Consensus 357 I~~~aF~------~C~~L~~i~lp~ 375 (394)
T 4fs7_A 357 IGANAFQ------GCINLKKVELPK 375 (394)
T ss_dssp ECTTTBT------TCTTCCEEEEEG
T ss_pred ehHHHhh------CCCCCCEEEECC
Confidence 7655544 678899998864
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=1.3e-07 Score=84.59 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=61.4
Q ss_pred ccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCccccccHHHHHH----hhcCcEEEEcccccchhhhcc
Q 005744 502 LLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKN----LLQLQKVKVTDCTNLKLIVGK 577 (679)
Q Consensus 502 ~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~----l~~L~~L~i~~c~~L~~l~~~ 577 (679)
.|+.|++++|. +++..-.. ...+++|++|++++|..+++- ....+.. .++|++|+|++|+++++-...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~------L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH------MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG------GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHH------hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 46666666664 44322111 346788999999999888775 2223333 357999999999888765432
Q ss_pred ccccccCCCCccccccccccceeeccCCCCcccc
Q 005744 578 ESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSS 611 (679)
Q Consensus 578 ~~~~~~~~~~~~~l~~l~~L~~L~l~~cp~L~~l 611 (679)
.+..+++|++|+|++||++++.
T Consensus 134 ------------~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ------------ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ------------HGGGCTTCCEEEEESCTTCCCH
T ss_pred ------------HHhcCCCCCEEECCCCCCCCch
Confidence 4557899999999999988863
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=3.3e-07 Score=93.52 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCcceeeeeeccCCcc--------cCCCchhhcCCCCccEEEeCCCcCCcCCccccCCcCCCEEEcCCcccCC--ccccc
Q 005744 230 GFLKLKLFLFFTENLS--------LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIG 299 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~ 299 (679)
.+++|+.|.+...... ..-...++..+++|+.|+++++.-..++. +. +++|++|++..|.+.. ...++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 4667777777543211 00122445677788888887764234444 33 6778888887776654 33343
Q ss_pred --CCCCCcEEEecCC--C------CCccchhh--hcCCCCCEEcccCCccccccCccc--ccCCCCCcEEEccCCcccce
Q 005744 300 --DLKKLEILSLKHS--S------IEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNV--ISNLTRLEELYMGNSFTQWK 365 (679)
Q Consensus 300 --~L~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~l~~lp~~~--l~~l~~L~~L~l~~~~~~~~ 365 (679)
.+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+... ...+++|++|+++.|.+...
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6777888877531 1 22222222 246777777777643221111110 12466777777777654321
Q ss_pred eccCCcCChhhhhcCCCCceEEeecCCC
Q 005744 366 VEGQSNASLGELKQLSRLTTLEVHIPDA 393 (679)
Q Consensus 366 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 393 (679)
. .......+.++++|+.|+++.|.+
T Consensus 295 G---~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 295 G---ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp H---HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred H---HHHHHhhcccCCcceEEECCCCcC
Confidence 0 001122345566777777776643
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=9.4e-07 Score=78.99 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=54.9
Q ss_pred CCccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc-cCC--cccccCC----CCCcEEEecCC-CCCcc-chhhhcCCC
Q 005744 257 TELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL-VVD--VAIIGDL----KKLEILSLKHS-SIEQL-PREIGQLTC 326 (679)
Q Consensus 257 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~-~~~--~~~i~~L----~~L~~L~l~~~-~l~~l-p~~i~~L~~ 326 (679)
..|+.||++++.++.. -..+..+++|++|+|++|. +++ ...++.+ ++|++|++++| +|+.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688888888877632 2346677888888888885 443 4555554 35777777777 56621 123556777
Q ss_pred CCEEcccCCccccc
Q 005744 327 LKLLDLSNCSKLKE 340 (679)
Q Consensus 327 L~~L~l~~~~~l~~ 340 (679)
|++|++++|..+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777766655
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.16 E-value=0.00012 Score=76.02 Aligned_cols=120 Identities=11% Similarity=0.190 Sum_probs=63.4
Q ss_pred ceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCc---CCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (679)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (679)
.|+.+.+..+ + ..+....|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ +.. ...+..+.+|+.
T Consensus 65 ~L~sI~iP~s-v-t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-V-TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-C-CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-e-eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3666666432 2 24555556667777777766542 44442 34556666666555443 222 345566666666
Q ss_pred EEecCCCCCccch-hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccC
Q 005744 307 LSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (679)
Q Consensus 307 L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (679)
+.+..+ +..++. .+..+.+|+.+.+.. .++.+....+.. .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 666532 333332 355566666666654 345555444433 4566665543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=1.5e-06 Score=79.89 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred hcCCCCccEEEeCCC-cCC-----cCCccccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCCc----
Q 005744 253 FEGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIEQ---- 316 (679)
Q Consensus 253 ~~~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~---- 316 (679)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345556666666666 554 133444555666666666666544 1 223344556666666666552
Q ss_pred -cchhhhcCCCCCEEcc
Q 005744 317 -LPREIGQLTCLKLLDL 332 (679)
Q Consensus 317 -lp~~i~~L~~L~~L~l 332 (679)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 3444455555666666
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2.6e-06 Score=86.88 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=91.4
Q ss_pred cCCCeEEEccCCCcc----------cCCccc-CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCc-CCccc
Q 005744 209 DEAPTAISIPFRGIY----------ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSL 276 (679)
Q Consensus 209 ~~~l~~l~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i 276 (679)
.++++.|.+.....+ .+...+ .+|+|+.|.++++... .++. + . +++|+.|++..+.+.. ....+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHH
Confidence 456777777543221 122222 6788888888876322 3443 2 3 7888999988877652 11223
Q ss_pred c--CCcCCCEEEcCCc--cc-CC--c----ccc--cCCCCCcEEEecCCCCCc-cchhh---hcCCCCCEEcccCCcccc
Q 005744 277 G--CLINLRTLSLENC--LV-VD--V----AII--GDLKKLEILSLKHSSIEQ-LPREI---GQLTCLKLLDLSNCSKLK 339 (679)
Q Consensus 277 ~--~l~~L~~L~L~~~--~~-~~--~----~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~l~ 339 (679)
. .+++|++|+|+.+ .. .. . ..+ +.+++|++|++++|.+.. .+..+ ..+++|++|+++. +.++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~ 292 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLT 292 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCB
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCC
Confidence 2 6888888888532 11 11 1 122 357889999998887762 22223 2578899999987 4565
Q ss_pred c-----cCcccccCCCCCcEEEccCCccc
Q 005744 340 E-----IRPNVISNLTRLEELYMGNSFTQ 363 (679)
Q Consensus 340 ~-----lp~~~l~~l~~L~~L~l~~~~~~ 363 (679)
. ++.. +..+++|+.|++++|.+.
T Consensus 293 d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 293 DEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred hHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 5 2222 456788999999888654
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=4.3e-06 Score=76.69 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCcceeeeeeccC-CcccC---CCchhhcCCCCccEEEeCCCcCCc-----CCccccCCcCCCEEEcCCcccCC------
Q 005744 230 GFLKLKLFLFFTE-NLSLQ---IPDPFFEGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD------ 294 (679)
Q Consensus 230 ~~~~L~~L~l~~~-~~~~~---~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~~~------ 294 (679)
..+.|++|++++| .+... .....+...++|++|+|++|.+.. +...+...++|++|+|++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455555555555 43321 011123556777888888877652 44455566778888888887765
Q ss_pred cccccCCCCCcEEEe--cCCCCCc-----cchhhhcCCCCCEEcccCC
Q 005744 295 VAIIGDLKKLEILSL--KHSSIEQ-----LPREIGQLTCLKLLDLSNC 335 (679)
Q Consensus 295 ~~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 335 (679)
...+...+.|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 245666677888888 7777772 4444556667777777663
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1.2e-05 Score=77.56 Aligned_cols=78 Identities=28% Similarity=0.264 Sum_probs=57.0
Q ss_pred cCCCCccEEEeCCCcCCcC---CccccCCcCCCEEEcCCcccCCcccccCCC--CCcEEEecCCCCC-ccc-------hh
Q 005744 254 EGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENCLVVDVAIIGDLK--KLEILSLKHSSIE-QLP-------RE 320 (679)
Q Consensus 254 ~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~L~~~~~~~~~~i~~L~--~L~~L~l~~~~l~-~lp-------~~ 320 (679)
.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+.....+..+. +|++|++++|.+. .+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5678889999999888764 456678888888888888887755555555 8888888888776 333 23
Q ss_pred hhcCCCCCEEc
Q 005744 321 IGQLTCLKLLD 331 (679)
Q Consensus 321 i~~L~~L~~L~ 331 (679)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777775
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=2e-06 Score=83.06 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=47.0
Q ss_pred cCCcCCCEEEcCCcccCCc----ccccCCCCCcEEEecCCCCCccchhhhcCC--CCCEEcccCCccccccCc------c
Q 005744 277 GCLINLRTLSLENCLVVDV----AIIGDLKKLEILSLKHSSIEQLPREIGQLT--CLKLLDLSNCSKLKEIRP------N 344 (679)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------~ 344 (679)
.++++|++|+|++|.+... ..++.+++|++|+|++|.++.+. .+..+. +|++|++++|.-...+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567777788877777662 33456777777777777777652 344444 667777766443233331 2
Q ss_pred cccCCCCCcEEE
Q 005744 345 VISNLTRLEELY 356 (679)
Q Consensus 345 ~l~~l~~L~~L~ 356 (679)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245556666665
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.76 E-value=0.0005 Score=71.33 Aligned_cols=110 Identities=11% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCchhhcCCC-CccEEEeCCCcCCcC-CccccCCcCCCEEEcCCcc---cCC--cccccCCCCCcEEEecCCCCCccch
Q 005744 247 QIPDPFFEGMT-ELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL---VVD--VAIIGDLKKLEILSLKHSSIEQLPR 319 (679)
Q Consensus 247 ~~~~~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp~ 319 (679)
.+.+..|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. +.. ...|..+.+|+.+.+.. .++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehh
Confidence 45566677774 5888888764 6666 4568888999999887653 333 35566777777766654 3555544
Q ss_pred -hhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCC
Q 005744 320 -EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (679)
Q Consensus 320 -~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (679)
.+..+.+|+.+.+.. .+..++...+....+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 356777888887764 456666666777778888777554
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.33 E-value=0.0068 Score=62.24 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=57.3
Q ss_pred hhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEecCCCcccccc
Q 005744 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP 550 (679)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 550 (679)
.++..|+.+.+..+ ++.+.. ..+....+|+.+.+.. +++.+....+ ..+++|+.+.+.+ ..++.++.
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~--~aF~~~~~l~~i~l~~--~i~~i~~~aF------~~c~~L~~i~l~~-~~i~~I~~ 303 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGS--FLLQNCTALKTLNFYA--KVKTVPYLLC------SGCSNLTKVVMDN-SAIETLEP 303 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECT--TTTTTCTTCCEEEECC--CCSEECTTTT------TTCTTCCEEEECC-TTCCEECT
T ss_pred cCCccceEEEcCCC--ccEeCc--cccceeehhccccccc--cceecccccc------ccccccccccccc-cccceehh
Confidence 45566666666543 444432 2234556677666643 4555544333 2567777777755 34666633
Q ss_pred HHHHHHhhcCcEEEEcccccchhhhccccccccCCCCccccccccccceeec
Q 005744 551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL 602 (679)
Q Consensus 551 ~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 602 (679)
..+.++.+|+.+.+.+ +++.+... ++.++++|+++.+
T Consensus 304 -~aF~~c~~L~~i~lp~--~l~~I~~~------------aF~~C~~L~~i~i 340 (379)
T 4h09_A 304 -RVFMDCVKLSSVTLPT--ALKTIQVY------------AFKNCKALSTISY 340 (379)
T ss_dssp -TTTTTCTTCCEEECCT--TCCEECTT------------TTTTCTTCCCCCC
T ss_pred -hhhcCCCCCCEEEcCc--cccEEHHH------------HhhCCCCCCEEEE
Confidence 3456677777777743 24444321 4556666666665
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.25 E-value=0.0077 Score=61.86 Aligned_cols=289 Identities=11% Similarity=0.087 Sum_probs=139.2
Q ss_pred CCcceeeeeeccCCcccCCCchhhcCCCCccEEEeCCCcCCcCC-ccccCCcCCCEEEcCCcccCC--cccccCCCCCcE
Q 005744 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (679)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (679)
...+|+.+.+... + ..+++..|.++.+|+.+++..+ ++.++ .+|.++ .|+.+.+..+ +.. ...|.. .+|+.
T Consensus 44 ~~~~i~~v~ip~~-v-t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNSG-I-TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGCSEEEECTT-E-EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred cccCCEEEEeCCC-c-cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 4456666666432 2 2566666777888888887643 56553 345554 5666655433 222 223333 36777
Q ss_pred EEecCCCCCccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcccceeccC-----CcCChhhhhcCC
Q 005744 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ-----SNASLGELKQLS 381 (679)
Q Consensus 307 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~l~~l~ 381 (679)
+.+..+ +..+....-.-.+|..+.+.. .++.+....+....+++...+............ ............
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 777553 343433322223455554443 344555444566666666665443221111000 000000011111
Q ss_pred CCceEEeecCCCccCCccccccccceeEEEeCCcccCCCCCCCcceEEecCCCcceechhHHHHhhcccccccccccCcc
Q 005744 382 RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK 461 (679)
Q Consensus 382 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 461 (679)
.+..+.+.... ..+ ....+.....++.+.+... ...++.........|+.+.+... ++
T Consensus 195 ~~~~~~~~~~~-~~i------------------~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~ 252 (379)
T 4h09_A 195 TGTEFTIPSTV-KTV------------------TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VT 252 (379)
T ss_dssp CCSEEECCTTC-CEE------------------CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CC
T ss_pred cccccccccce-eEE------------------eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--cc
Confidence 12221111100 000 0012223344444444321 12222222222455666665432 33
Q ss_pred cccc-cccchhhccccceEeeecCCCeeEEEeCCCccccccccceeeccccccccccccCcccCCCCccccCCccEEEEe
Q 005744 462 NVVH-ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540 (679)
Q Consensus 462 ~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 540 (679)
.+.. .+ .++.+|+.+.+.. .++.+.. ..+..+++|+.+.+.+ ..++.+....+. .+.+|+.+.|.
T Consensus 253 ~I~~~aF---~~~~~l~~i~l~~--~i~~i~~--~aF~~c~~L~~i~l~~-~~i~~I~~~aF~------~c~~L~~i~lp 318 (379)
T 4h09_A 253 SIGSFLL---QNCTALKTLNFYA--KVKTVPY--LLCSGCSNLTKVVMDN-SAIETLEPRVFM------DCVKLSSVTLP 318 (379)
T ss_dssp EECTTTT---TTCTTCCEEEECC--CCSEECT--TTTTTCTTCCEEEECC-TTCCEECTTTTT------TCTTCCEEECC
T ss_pred EeCcccc---ceeehhccccccc--cceeccc--cccccccccccccccc-cccceehhhhhc------CCCCCCEEEcC
Confidence 3332 23 5677788887754 3444432 3345678888888866 456666555443 66788888885
Q ss_pred cCCCccccccHHHHHHhhcCcEEEEc
Q 005744 541 GCHRVKHLFPFSLVKNLLQLQKVKVT 566 (679)
Q Consensus 541 ~c~~L~~l~~~~~~~~l~~L~~L~i~ 566 (679)
. .++.+.. ..+.+|.+|+.+.+.
T Consensus 319 ~--~l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 319 T--ALKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp T--TCCEECT-TTTTTCTTCCCCCCC
T ss_pred c--cccEEHH-HHhhCCCCCCEEEEC
Confidence 3 5677633 345667777776664
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.022 Score=48.18 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=24.4
Q ss_pred EEEeCCCcCC--cCCccccCCcCCCEEEcCCcccCC--cccccCCCCCcEEEecCCC
Q 005744 261 VLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS 313 (679)
Q Consensus 261 ~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~ 313 (679)
+++.+++.++ .+|..+. .+|++|+|++|.+.. +..|..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 5554332 245555555555444 2334445555555555543
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.31 E-value=0.022 Score=48.10 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=39.3
Q ss_pred EEEecCCCCC--ccchhhhcCCCCCEEcccCCccccccCcccccCCCCCcEEEccCCcc
Q 005744 306 ILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (679)
Q Consensus 306 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (679)
+++.++++++ .+|..+. .+|++|+|++ +.++.+|.+.+..+++|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5666777777 7775432 4678888887 677888877777788888888887754
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.74 E-value=0.018 Score=52.20 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCCCccEEEeCCC-cCC-----cCCccccCCcCCCEEEcCCcccCC--c----ccccCCCCCcEEEecCCCCC-----cc
Q 005744 255 GMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE-----QL 317 (679)
Q Consensus 255 ~l~~L~~L~l~~~-~l~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~l 317 (679)
+-+.|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.+.+ - ..+..=+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555555553 433 123334444556666666665544 1 12223345666666666555 12
Q ss_pred chhhhcCCCCCEEcccC
Q 005744 318 PREIGQLTCLKLLDLSN 334 (679)
Q Consensus 318 p~~i~~L~~L~~L~l~~ 334 (679)
-..+..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22333344455555553
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.038 Score=50.08 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=72.8
Q ss_pred ccCCcCCCEEEcCCc-ccCC------cccccCCCCCcEEEecCCCCC-----ccchhhhcCCCCCEEcccCCccccccCc
Q 005744 276 LGCLINLRTLSLENC-LVVD------VAIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRP 343 (679)
Q Consensus 276 i~~l~~L~~L~L~~~-~~~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 343 (679)
+.+-+.|+.|+|+++ .+.+ -..+..-..|+.|+|++|.|. .+...+..-+.|++|+|++ +.++.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHH
Confidence 345578999999985 6654 244566678999999999887 4455566778899999988 55554221
Q ss_pred ----ccccCCCCCcEEEccCCcc-cceeccCCcCChhhhhcCCCCceEEeecCC
Q 005744 344 ----NVISNLTRLEELYMGNSFT-QWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (679)
Q Consensus 344 ----~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 392 (679)
..+..=+.|++|+++++.. .... .........|..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~-~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGN-QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCH-HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCH-HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1244456789999876522 1000 0001223456666778888887654
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.08 E-value=0.94 Score=46.52 Aligned_cols=149 Identities=13% Similarity=0.023 Sum_probs=85.1
Q ss_pred eeccCCCHHHHHHHHHHHh---CCCCCCCChHHHHHHHHHHhC------CcchHHHHHHHHh---c---CC---ChHHHH
Q 005744 10 FLDWLLSNEEASHLFEKIV---GHSAKKSDFETIGVEIVAKCG------GLPIAIKTIANAL---K---NK---SPRIWK 71 (679)
Q Consensus 10 ~~~~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~------GlPLai~~ig~~L---~---~~---~~~~W~ 71 (679)
+++.+|+.++++++|..++ |... .--.+..+.|++.|+ |.|..+..+.... + +. +.+.+.
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8999999999999997664 3321 112567888999999 9997665544321 1 11 344555
Q ss_pred HHHHHhhccCCCcccccccccceeeeccccCChhhHHHHHHhccccC--CCCcccHHhHHHHHhh-----cccccccchH
Q 005744 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK--DGSRIAVDDLLRYVMG-----LRLLTNADTL 144 (679)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp--~~~~~~~~~li~~wia-----eg~i~~~~~~ 144 (679)
.+...... ...+.-++..||.+ .+.++..++.+. .+..+...++...+.. .|. .+..
T Consensus 288 ~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 351 (412)
T 1w5s_A 288 KAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRG-- 351 (412)
T ss_dssp HHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCC--
T ss_pred HHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCC--
Confidence 44443210 12345567889988 688888888654 3335666666554421 121 1111
Q ss_pred HHHHHHHHHHHHHHHhccccccC----CCCCceEehhhH
Q 005744 145 EAARNRVHTLIDNLKSASLLFDG----DSEDHAKMHRII 179 (679)
Q Consensus 145 ~~~~~~~~~l~~~L~~~~~~~~~----~~~~~~~mhdli 179 (679)
...+.+++++|.+.+++... +..+.+++|++.
T Consensus 352 ---~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 352 ---YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp ---HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ---HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 12344678888888988542 223345555544
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.88 E-value=0.72 Score=46.10 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=83.9
Q ss_pred CceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcC-CChHHH-HHHHHHhhccCCCcc
Q 005744 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIW-KDAVNQLSNSNPRKI 85 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~-~~~~~W-~~~~~~l~~~~~~~~ 85 (679)
..+++.+|+.+|+.+++...+.......+ .+...++++.|+|.|+++..++..+.. .+...| ..+.+.....
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 269 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL----- 269 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-----
Confidence 47999999999999999875421111112 457889999999999999999876542 222222 1121111000
Q ss_pred cccccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHhccccc
Q 005744 86 QGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF 165 (679)
Q Consensus 86 ~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~~L~~~~~~~ 165 (679)
+.. .+-.+.+ . +.. .+..+..+|. + ..+..++.....+.. - ... .....++++.|.+.+++.
T Consensus 270 --~~~--~l~~l~~-~-~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~-~-~~~-----~~~~~~~l~~L~~~gli~ 331 (350)
T 2qen_A 270 --IMG--ELEELRR-R-SPR-YVDILRAIAL---G-YNRWSLIRDYLAVKG-T-KIP-----EPRLYALLENLKKMNWIV 331 (350)
T ss_dssp --HHH--HHHHHHH-H-CHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-CCC-----HHHHHHHHHHHHHTTSEE
T ss_pred --HHH--HHHHHHh-C-Chh-HHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-CCC-----HHHHHHHHHHHHhCCCEE
Confidence 000 0011112 2 555 6888888886 2 245555554442211 0 111 123446778888889886
Q ss_pred cCCCCCceEe-hhhHHHHH
Q 005744 166 DGDSEDHAKM-HRIIHAIA 183 (679)
Q Consensus 166 ~~~~~~~~~m-hdli~~l~ 183 (679)
..+ ..|.+ |.+++++.
T Consensus 332 ~~~--~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 332 EED--NTYKIADPVVATVL 348 (350)
T ss_dssp EET--TEEEESSHHHHHHH
T ss_pred ecC--CEEEEecHHHHHHH
Confidence 542 34554 66666653
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.21 E-value=0.85 Score=45.65 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=82.9
Q ss_pred CceeccCCCHHHHHHHHHHHhCC-CCCCCChHHHHHHHHHHhCCcchHHHHHHHHhcC-CChHHHH-HHHHHhhccCCCc
Q 005744 8 EDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIWK-DAVNQLSNSNPRK 84 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~-~~~~~W~-~~~~~l~~~~~~~ 84 (679)
..+++.+|+.+|+.+++...+.. ....++. .+|++.|+|.|+++..++..+.. .+...|- .+.+.....
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 273 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL---- 273 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH----
Confidence 57999999999999999886521 1122222 78999999999999999887652 2333331 111111000
Q ss_pred ccccccccceeeecc--ccCChhhHHHHHHhccccCCCCcccHHhHHHHHh-hcccccccchHHHHHHHHHHHHHHHHhc
Q 005744 85 IQGMDADLSSIELSY--EFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM-GLRLLTNADTLEAARNRVHTLIDNLKSA 161 (679)
Q Consensus 85 ~~~~~~~~~~l~~SY--~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wi-aeg~i~~~~~~~~~~~~~~~l~~~L~~~ 161 (679)
+...+ -.+.| ..+|.. .+..+..+|. + . +...+..... ..|. +.. .....++++.|.+.
T Consensus 274 ---~~~~l--~~~~~~~~~l~~~-~~~~l~~la~---g-~-~~~~l~~~~~~~~g~--~~~-----~~~~~~~L~~L~~~ 335 (357)
T 2fna_A 274 ---ILKEF--ENFLHGREIARKR-YLNIMRTLSK---C-G-KWSDVKRALELEEGI--EIS-----DSEIYNYLTQLTKH 335 (357)
T ss_dssp ---HHHHH--HHHHTTCGGGHHH-HHHHHHHHTT---C-B-CHHHHHHHHHHHHCS--CCC-----HHHHHHHHHHHHHT
T ss_pred ---HHHHH--HHHhhccccccHH-HHHHHHHHHc---C-C-CHHHHHHHHHHhcCC--CCC-----HHHHHHHHHHHHhC
Confidence 00000 01111 156776 6888888887 2 1 4444433221 1121 001 12344678888889
Q ss_pred cccccCCCCCceE-ehhhHHHH
Q 005744 162 SLLFDGDSEDHAK-MHRIIHAI 182 (679)
Q Consensus 162 ~~~~~~~~~~~~~-mhdli~~l 182 (679)
+++...+ ..|+ .|.++++.
T Consensus 336 gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 336 SWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TSEEESS--SCEEESSHHHHHH
T ss_pred CCEEecC--CEEEecCHHHHHh
Confidence 9886543 3455 56777764
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=70.22 E-value=7.8 Score=37.92 Aligned_cols=55 Identities=13% Similarity=-0.057 Sum_probs=41.3
Q ss_pred CCceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHh
Q 005744 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANAL 62 (679)
Q Consensus 7 ~~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L 62 (679)
..++++.+++.+|..+++.+.+......- -.+..+.+++.++|.|-.+..+...+
T Consensus 160 ~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 160 GIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp SCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 35899999999999999988875322111 24678889999999998887665544
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.95 E-value=6 Score=36.47 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=41.4
Q ss_pred CceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHHh
Q 005744 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANAL 62 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L 62 (679)
..+++++++.+|..+++...+......-+ .+..+.+++.|+|.|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57899999999999999988753221111 4667889999999999988766543
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.92 E-value=1.1e+02 Score=30.17 Aligned_cols=135 Identities=11% Similarity=0.002 Sum_probs=75.8
Q ss_pred CceeccCCCHHHHHHHHHHHh---CCC-CCCCChHHHHHHHHHHhC---Ccch-HHHHHHHHh--c---C-CChHHHHHH
Q 005744 8 EDFLDWLLSNEEASHLFEKIV---GHS-AKKSDFETIGVEIVAKCG---GLPI-AIKTIANAL--K---N-KSPRIWKDA 73 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~---~~~-~~~~~~~~~~~~i~~~c~---GlPL-ai~~ig~~L--~---~-~~~~~W~~~ 73 (679)
..+++++++.++..++|..++ |.. ... .+..+.+++.|+ |-|- |+..+-... + . -+.+.++.+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 389999999999999999985 321 222 345677888887 8776 444433332 2 1 278888888
Q ss_pred HHHhhccCCCcccccccccceeeeccccCChhhHHHHHHhccccCCCCcccHHhHHHHHhhcccccccchHHHHHHHHHH
Q 005744 74 VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHT 153 (679)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wiaeg~i~~~~~~~~~~~~~~~ 153 (679)
++.... ..+.-+++.|+.+ -+..+...+....+.++. +.+...--..| +.+. ....+.+
T Consensus 267 ~~~~~~-------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~-----~~~~~~~ 325 (384)
T 2qby_B 267 IVDYEQ-------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPL-----SYRRFSD 325 (384)
T ss_dssp HHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCC-----CHHHHHH
T ss_pred HHHHhc-------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCC-----CHHHHHH
Confidence 776432 2244566778876 355544455411100111 11111111223 1111 1234556
Q ss_pred HHHHHHhcccccc
Q 005744 154 LIDNLKSASLLFD 166 (679)
Q Consensus 154 l~~~L~~~~~~~~ 166 (679)
++..|.+.+++..
T Consensus 326 ~l~~L~~~gli~~ 338 (384)
T 2qby_B 326 IISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHTTSEEE
T ss_pred HHHHHHhCCCEEE
Confidence 7888888898864
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=41.30 E-value=1e+02 Score=30.29 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=78.7
Q ss_pred CceeccCCCHHHHHHHHHHHhC---C-CCCCCChHHHHHHHHHHhC---Ccc-hHHHHHHHHhc-----C--C-ChHHHH
Q 005744 8 EDFLDWLLSNEEASHLFEKIVG---H-SAKKSDFETIGVEIVAKCG---GLP-IAIKTIANALK-----N--K-SPRIWK 71 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~~---~-~~~~~~~~~~~~~i~~~c~---GlP-Lai~~ig~~L~-----~--~-~~~~W~ 71 (679)
..+++++++.++..+++...+. . ....+ +..+.++++++ |.| .|+.++..... + . +.+.++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 4789999999999999998853 2 22233 35667777777 999 44433333221 2 2 677777
Q ss_pred HHHHHhhccCCCcccccccccceeeeccccCChhhHHHHHHhcc-ccCCCCcccHHhHHHHH----hhcccccccchHHH
Q 005744 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCG-LLKDGSRIAVDDLLRYV----MGLRLLTNADTLEA 146 (679)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~-~fp~~~~~~~~~li~~w----iaeg~i~~~~~~~~ 146 (679)
.+++.... ..+.-++..++.+ -+..+...+ ++-.+..+...++.+.. -..| +.+.
T Consensus 271 ~a~~~~~~-------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 330 (387)
T 2v1u_A 271 SARAEIER-------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHV----- 330 (387)
T ss_dssp HHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCC-----
T ss_pred HHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCC-----
Confidence 77766421 1234456788887 455555454 33222245555443332 2223 1111
Q ss_pred HHHHHHHHHHHHHhcccccc
Q 005744 147 ARNRVHTLIDNLKSASLLFD 166 (679)
Q Consensus 147 ~~~~~~~l~~~L~~~~~~~~ 166 (679)
+...+.++++.|...+++..
T Consensus 331 ~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 331 TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCCCeEE
Confidence 12355677888888888864
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.91 E-value=2.4e+02 Score=27.66 Aligned_cols=139 Identities=10% Similarity=-0.045 Sum_probs=78.0
Q ss_pred CceeccCCCHHHHHHHHHHHhCC-CCCCCChHHHHHHHHHHh---------CCcchHHHHHH-HHhc-----CC---ChH
Q 005744 8 EDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKC---------GGLPIAIKTIA-NALK-----NK---SPR 68 (679)
Q Consensus 8 ~~~~~~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c---------~GlPLai~~ig-~~L~-----~~---~~~ 68 (679)
..+++.+++.++..+++...+.. .....--.+..+.+++++ +|.|-.+..+. .... +. +.+
T Consensus 186 ~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~ 265 (389)
T 1fnn_A 186 YVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPE 265 (389)
T ss_dssp CEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 36899999999999999887631 001111246778899999 78765443332 2221 22 334
Q ss_pred HHHHHHHHhhccCCCcccccccccceeeeccccCChhhHHHHHHhccccC---CCCcccHHhHHHHHhh----ccccccc
Q 005744 69 IWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK---DGSRIAVDDLLRYVMG----LRLLTNA 141 (679)
Q Consensus 69 ~W~~~~~~l~~~~~~~~~~~~~~~~~l~~SY~~L~~~~lk~cfl~~~~fp---~~~~~~~~~li~~wia----eg~i~~~ 141 (679)
....+..... ...+.-.+..||.+ .+..+..++.+. .+..+...++...+.. .|. .+.
T Consensus 266 ~v~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 330 (389)
T 1fnn_A 266 DVRKSSKEVL-------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-RPR 330 (389)
T ss_dssp HHHHHHHHHS-------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-CCC
T ss_pred HHHHHHHHHh-------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-CCC
Confidence 4444443321 12233446778877 566666566544 2224566666554432 231 111
Q ss_pred chHHHHHHHHHHHHHHHHhcccccc
Q 005744 142 DTLEAARNRVHTLIDNLKSASLLFD 166 (679)
Q Consensus 142 ~~~~~~~~~~~~l~~~L~~~~~~~~ 166 (679)
. ...+.+++++|...+++..
T Consensus 331 ~-----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 331 V-----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp C-----HHHHHHHHHHHHHTTSSEE
T ss_pred C-----HHHHHHHHHHHHhCCCeEE
Confidence 1 1345577888888998864
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=27.91 E-value=63 Score=28.67 Aligned_cols=52 Identities=13% Similarity=-0.047 Sum_probs=37.9
Q ss_pred ceeccCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 005744 9 DFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANA 61 (679)
Q Consensus 9 ~~~~~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~ 61 (679)
.+++.+++.++..+++.+.+......- -.+..+.+++.++|.|..++.+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 789999999999999998874211111 1456778999999999876554433
No 178
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=21.12 E-value=44 Score=18.10 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.1
Q ss_pred HhCCcchHHHHHHHHhcCC
Q 005744 47 KCGGLPIAIKTIANALKNK 65 (679)
Q Consensus 47 ~c~GlPLai~~ig~~L~~~ 65 (679)
|-.-+|||+.+.++.+..+
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 4457999999999988643
Done!