Query 005745
Match_columns 679
No_of_seqs 395 out of 1998
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 13:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2337 Ubiquitin activating E 100.0 3E-172 7E-177 1375.2 42.5 633 12-679 5-641 (669)
2 TIGR01381 E1_like_apg7 E1-like 100.0 3E-163 7E-168 1364.2 57.6 623 17-678 1-632 (664)
3 cd01486 Apg7 Apg7 is an E1-lik 100.0 2.1E-83 4.6E-88 669.9 27.8 295 366-678 1-298 (307)
4 KOG2017 Molybdopterin synthase 100.0 1.4E-47 3.1E-52 398.4 14.1 242 342-661 41-289 (427)
5 PRK07411 hypothetical protein; 100.0 3.4E-41 7.3E-46 368.6 24.3 237 345-660 16-259 (390)
6 TIGR02355 moeB molybdopterin s 100.0 5E-41 1.1E-45 345.2 23.9 234 346-656 3-240 (240)
7 PRK12475 thiamine/molybdopteri 100.0 9.8E-41 2.1E-45 358.5 23.9 238 345-659 2-246 (338)
8 PRK07688 thiamine/molybdopteri 100.0 1.9E-40 4E-45 356.5 24.3 238 345-659 2-246 (339)
9 PRK05690 molybdopterin biosynt 100.0 7.9E-40 1.7E-44 337.2 24.4 203 346-604 11-217 (245)
10 PRK08223 hypothetical protein; 100.0 5.1E-40 1.1E-44 343.5 22.9 234 343-648 5-267 (287)
11 PRK05597 molybdopterin biosynt 100.0 1E-39 2.2E-44 353.0 22.8 230 345-653 6-242 (355)
12 PRK07878 molybdopterin biosynt 100.0 6.5E-39 1.4E-43 350.9 24.4 205 346-604 21-232 (392)
13 PRK05600 thiamine biosynthesis 100.0 7.5E-39 1.6E-43 347.7 23.8 240 345-660 19-265 (370)
14 TIGR02356 adenyl_thiF thiazole 100.0 1.9E-38 4.2E-43 318.0 19.7 198 347-600 1-202 (202)
15 PRK08328 hypothetical protein; 100.0 6.5E-38 1.4E-42 320.4 21.6 199 346-604 8-209 (231)
16 PRK08762 molybdopterin biosynt 100.0 2E-37 4.4E-42 337.5 24.3 239 346-659 114-359 (376)
17 cd00757 ThiF_MoeB_HesA_family 100.0 1.3E-37 2.9E-42 317.1 21.2 199 347-604 1-206 (228)
18 COG0476 ThiF Dinucleotide-util 100.0 7.1E-36 1.5E-40 308.6 21.2 203 346-604 9-218 (254)
19 TIGR03603 cyclo_dehy_ocin bact 100.0 7E-34 1.5E-38 303.1 18.1 223 346-660 53-298 (318)
20 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.1E-33 6.7E-38 279.6 20.0 175 346-604 2-178 (197)
21 cd01485 E1-1_like Ubiquitin ac 100.0 8.6E-33 1.9E-37 276.5 20.0 175 347-604 1-179 (198)
22 PRK08644 thiamine biosynthesis 100.0 1.5E-32 3.3E-37 277.6 20.0 190 354-603 18-209 (212)
23 cd01488 Uba3_RUB Ubiquitin act 100.0 2.4E-31 5.1E-36 279.7 21.8 130 366-516 1-139 (291)
24 cd01484 E1-2_like Ubiquitin ac 100.0 1.6E-30 3.6E-35 266.2 19.7 175 366-598 1-177 (234)
25 PRK14852 hypothetical protein; 100.0 3.7E-30 8E-35 301.8 22.5 226 335-614 302-555 (989)
26 TIGR02354 thiF_fam2 thiamine b 100.0 6.2E-30 1.3E-34 256.4 19.4 183 357-600 14-200 (200)
27 cd01487 E1_ThiF_like E1_ThiF_l 100.0 6.6E-30 1.4E-34 250.9 18.6 172 366-597 1-174 (174)
28 PRK14851 hypothetical protein; 100.0 2.2E-29 4.7E-34 291.0 22.0 218 344-612 22-264 (679)
29 PRK07877 hypothetical protein; 100.0 1.7E-29 3.7E-34 292.7 19.4 146 345-513 87-234 (722)
30 PF00899 ThiF: ThiF family; I 100.0 6.1E-29 1.3E-33 233.3 18.4 133 363-515 1-134 (135)
31 TIGR01408 Ube1 ubiquitin-activ 100.0 3E-29 6.5E-34 299.6 19.6 237 309-603 354-609 (1008)
32 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.8E-29 6.1E-34 263.6 16.7 146 348-517 2-149 (286)
33 cd01489 Uba2_SUMO Ubiquitin ac 100.0 4.8E-29 1E-33 264.8 17.7 133 366-517 1-134 (312)
34 cd01490 Ube1_repeat2 Ubiquitin 100.0 1E-27 2.2E-32 263.7 20.8 181 366-603 1-189 (435)
35 KOG2013 SMT3/SUMO-activating c 99.9 2.2E-28 4.8E-33 263.5 9.6 186 359-603 7-195 (603)
36 cd01483 E1_enzyme_family Super 99.9 1E-26 2.2E-31 220.0 16.4 132 366-517 1-133 (143)
37 KOG2015 NEDD8-activating compl 99.9 7.5E-27 1.6E-31 241.9 15.7 138 358-516 34-182 (422)
38 cd00755 YgdL_like Family of ac 99.9 1.4E-26 3.1E-31 236.8 15.4 130 356-505 3-133 (231)
39 PRK15116 sulfur acceptor prote 99.9 2.2E-26 4.7E-31 239.9 16.0 141 345-505 10-152 (268)
40 cd01493 APPBP1_RUB Ubiquitin a 99.9 8.3E-26 1.8E-30 249.2 16.3 155 346-518 1-157 (425)
41 KOG2336 Molybdopterin biosynth 99.9 1.1E-25 2.5E-30 229.3 14.3 216 336-605 51-287 (422)
42 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 1.3E-24 2.9E-29 223.6 18.2 199 362-611 9-229 (244)
43 TIGR01408 Ube1 ubiquitin-activ 99.9 9.1E-25 2E-29 261.4 18.5 149 346-518 5-157 (1008)
44 PRK06153 hypothetical protein; 99.9 1.4E-24 2.9E-29 234.4 14.9 128 359-509 171-301 (393)
45 COG1179 Dinucleotide-utilizing 99.9 2.5E-24 5.3E-29 217.6 12.5 141 345-505 10-152 (263)
46 KOG2012 Ubiquitin activating e 99.9 1.1E-23 2.4E-28 238.2 5.6 191 309-517 364-575 (1013)
47 PTZ00245 ubiquitin activating 99.8 3.8E-21 8.3E-26 196.3 11.4 98 345-446 6-104 (287)
48 KOG2014 SMT3/SUMO-activating c 99.8 2E-20 4.4E-25 193.4 13.3 162 333-518 2-165 (331)
49 KOG2018 Predicted dinucleotide 99.8 1.8E-19 3.8E-24 186.8 10.0 133 353-505 63-196 (430)
50 KOG2012 Ubiquitin activating e 99.7 5.1E-17 1.1E-21 184.8 11.6 154 341-519 14-169 (1013)
51 KOG2016 NEDD8-activating compl 99.7 6.6E-17 1.4E-21 174.1 7.9 152 346-515 8-161 (523)
52 TIGR03693 ocin_ThiF_like putat 99.6 5.6E-15 1.2E-19 166.8 18.1 172 359-603 124-302 (637)
53 PF05237 MoeZ_MoeB: MoeZ/MoeB 98.6 1.2E-08 2.5E-13 89.2 1.8 79 553-659 2-83 (84)
54 PF01488 Shikimate_DH: Shikima 98.1 1.2E-05 2.7E-10 75.9 9.1 81 360-487 8-88 (135)
55 COG1748 LYS9 Saccharopine dehy 98.1 2.1E-05 4.5E-10 86.8 11.0 98 365-506 2-99 (389)
56 PRK12549 shikimate 5-dehydroge 97.9 3.5E-05 7.5E-10 81.9 9.6 77 362-483 125-201 (284)
57 PF03435 Saccharop_dh: Sacchar 97.6 0.00033 7.1E-09 77.0 10.0 96 367-505 1-97 (386)
58 PRK12548 shikimate 5-dehydroge 97.5 0.00049 1.1E-08 73.2 10.5 85 362-483 124-208 (289)
59 COG4015 Predicted dinucleotide 97.4 0.00068 1.5E-08 66.1 9.0 117 364-505 18-140 (217)
60 PRK14027 quinate/shikimate deh 97.4 0.0006 1.3E-08 72.6 9.6 53 362-436 125-177 (283)
61 TIGR01809 Shik-DH-AROM shikima 97.2 0.00091 2E-08 71.0 8.4 78 362-484 123-200 (282)
62 PRK06718 precorrin-2 dehydroge 97.2 0.0019 4.1E-08 65.5 10.2 94 361-505 7-100 (202)
63 PRK12749 quinate/shikimate deh 97.2 0.0012 2.7E-08 70.3 9.1 54 362-434 122-175 (288)
64 PF13241 NAD_binding_7: Putati 97.1 0.00096 2.1E-08 60.2 5.7 88 361-505 4-91 (103)
65 COG0373 HemA Glutamyl-tRNA red 97.0 0.0018 3.9E-08 72.1 8.3 76 361-486 175-250 (414)
66 COG0169 AroE Shikimate 5-dehyd 97.0 0.0019 4.1E-08 68.9 7.8 52 362-435 124-175 (283)
67 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0054 1.2E-07 66.0 11.2 84 362-495 176-259 (311)
68 PRK13940 glutamyl-tRNA reducta 96.9 0.0023 5E-08 71.7 8.4 77 361-486 178-254 (414)
69 PRK00258 aroE shikimate 5-dehy 96.8 0.0039 8.5E-08 65.9 8.5 36 361-396 120-155 (278)
70 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0088 1.9E-07 67.0 11.2 77 361-487 177-253 (417)
71 TIGR01470 cysG_Nterm siroheme 96.7 0.014 3E-07 59.4 10.9 94 362-505 7-100 (205)
72 PF03807 F420_oxidored: NADP o 96.7 0.019 4.1E-07 50.3 10.3 91 366-507 1-95 (96)
73 TIGR03882 cyclo_dehyd_2 bacter 96.6 0.00074 1.6E-08 68.0 1.3 52 358-409 99-160 (193)
74 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.014 3.1E-07 58.0 10.2 84 361-486 25-109 (194)
75 cd01065 NAD_bind_Shikimate_DH 96.5 0.0099 2.1E-07 56.4 8.1 35 362-396 17-51 (155)
76 COG1086 Predicted nucleoside-d 96.5 0.011 2.5E-07 67.7 9.8 122 320-483 208-334 (588)
77 PRK06719 precorrin-2 dehydroge 96.5 0.02 4.4E-07 55.8 10.2 85 361-498 10-94 (157)
78 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0073 1.6E-07 58.4 6.7 102 366-509 1-106 (157)
79 PLN00203 glutamyl-tRNA reducta 96.4 0.011 2.4E-07 68.0 9.0 78 362-486 264-341 (519)
80 PRK00045 hemA glutamyl-tRNA re 96.2 0.03 6.5E-07 62.9 11.2 35 362-396 180-214 (423)
81 COG0569 TrkA K+ transport syst 96.2 0.042 9E-07 56.6 11.3 96 365-505 1-98 (225)
82 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.016 3.5E-07 57.2 7.7 35 361-396 41-76 (168)
83 PLN02819 lysine-ketoglutarate 96.1 0.033 7.2E-07 68.8 11.7 99 362-505 567-678 (1042)
84 cd05291 HicDH_like L-2-hydroxy 96.1 0.026 5.7E-07 60.5 9.3 32 365-396 1-33 (306)
85 PRK05562 precorrin-2 dehydroge 96.0 0.044 9.5E-07 56.6 10.1 96 360-505 21-116 (223)
86 PF01113 DapB_N: Dihydrodipico 95.9 0.049 1.1E-06 50.9 9.4 99 366-510 2-102 (124)
87 PRK14982 acyl-ACP reductase; P 95.9 0.026 5.7E-07 61.7 8.3 36 361-396 152-189 (340)
88 TIGR00518 alaDH alanine dehydr 95.8 0.069 1.5E-06 59.1 11.4 35 361-396 164-198 (370)
89 PRK08618 ornithine cyclodeamin 95.8 0.053 1.1E-06 58.8 10.1 94 363-505 126-220 (325)
90 TIGR02992 ectoine_eutC ectoine 95.7 0.045 9.7E-07 59.4 9.5 78 363-486 128-206 (326)
91 PRK05476 S-adenosyl-L-homocyst 95.7 0.055 1.2E-06 60.9 10.3 36 361-397 209-244 (425)
92 cd05311 NAD_bind_2_malic_enz N 95.7 0.014 2.9E-07 60.3 5.0 37 361-397 22-60 (226)
93 PRK15469 ghrA bifunctional gly 95.7 0.049 1.1E-06 58.9 9.5 92 360-507 132-227 (312)
94 PLN02928 oxidoreductase family 95.7 0.032 7E-07 61.1 8.2 104 360-506 155-262 (347)
95 PRK09242 tropinone reductase; 95.7 0.059 1.3E-06 55.1 9.6 62 362-446 7-69 (257)
96 PRK06197 short chain dehydroge 95.5 0.052 1.1E-06 57.4 8.7 36 360-396 12-48 (306)
97 PRK00094 gpsA NAD(P)H-dependen 95.5 0.085 1.8E-06 56.2 10.4 31 366-397 3-33 (325)
98 PRK07634 pyrroline-5-carboxyla 95.4 0.14 3E-06 52.6 11.3 96 363-509 3-102 (245)
99 PRK07063 short chain dehydroge 95.4 0.12 2.5E-06 53.0 10.7 63 361-446 4-67 (260)
100 PRK06141 ornithine cyclodeamin 95.4 0.071 1.5E-06 57.5 9.5 76 363-485 124-200 (314)
101 PRK14106 murD UDP-N-acetylmura 95.3 0.082 1.8E-06 59.2 9.9 95 362-504 3-97 (450)
102 PRK07062 short chain dehydroge 95.3 0.088 1.9E-06 54.0 9.4 62 362-446 6-68 (265)
103 PF03949 Malic_M: Malic enzyme 95.2 0.087 1.9E-06 55.5 9.0 104 360-505 21-139 (255)
104 PRK07831 short chain dehydroge 95.2 0.11 2.3E-06 53.4 9.7 36 360-396 13-50 (262)
105 TIGR01915 npdG NADPH-dependent 95.1 0.19 4.2E-06 51.2 11.2 99 366-509 2-104 (219)
106 TIGR02853 spore_dpaA dipicolin 95.1 0.071 1.5E-06 57.0 8.4 35 361-396 148-182 (287)
107 PRK07231 fabG 3-ketoacyl-(acyl 95.1 0.1 2.2E-06 52.7 9.1 35 362-397 3-38 (251)
108 PRK12491 pyrroline-5-carboxyla 95.1 0.18 3.8E-06 53.5 11.2 93 364-508 2-99 (272)
109 PRK08291 ectoine utilization p 95.1 0.098 2.1E-06 56.8 9.5 78 363-486 131-209 (330)
110 PRK00066 ldh L-lactate dehydro 95.1 0.11 2.3E-06 56.3 9.7 34 363-396 5-39 (315)
111 PRK11880 pyrroline-5-carboxyla 95.1 0.14 3.1E-06 53.3 10.3 89 365-505 3-93 (267)
112 PRK05875 short chain dehydroge 95.1 0.16 3.5E-06 52.5 10.5 34 362-396 5-39 (276)
113 PRK07340 ornithine cyclodeamin 95.0 0.085 1.8E-06 56.7 8.7 77 362-486 123-200 (304)
114 PRK05854 short chain dehydroge 95.0 0.097 2.1E-06 56.0 9.0 64 360-446 10-74 (313)
115 cd00401 AdoHcyase S-adenosyl-L 95.0 0.15 3.2E-06 57.4 10.7 35 361-396 199-233 (413)
116 PRK06932 glycerate dehydrogena 95.0 0.068 1.5E-06 57.8 7.9 88 360-507 143-234 (314)
117 PRK04148 hypothetical protein; 95.0 0.22 4.7E-06 47.7 10.3 99 363-511 16-114 (134)
118 PF00056 Ldh_1_N: lactate/mala 94.9 0.048 1E-06 52.1 5.7 77 365-484 1-79 (141)
119 PF02737 3HCDH_N: 3-hydroxyacy 94.9 0.009 2E-07 59.4 0.8 33 366-399 1-33 (180)
120 cd00762 NAD_bind_malic_enz NAD 94.9 0.11 2.5E-06 54.6 8.8 105 360-505 21-139 (254)
121 PRK14619 NAD(P)H-dependent gly 94.9 0.17 3.6E-06 54.3 10.4 33 364-397 4-36 (308)
122 COG1648 CysG Siroheme synthase 94.9 0.059 1.3E-06 55.2 6.6 95 361-505 9-103 (210)
123 cd05312 NAD_bind_1_malic_enz N 94.9 0.15 3.2E-06 54.4 9.7 104 360-505 21-138 (279)
124 TIGR00936 ahcY adenosylhomocys 94.9 0.17 3.7E-06 56.8 10.6 35 362-397 193-227 (406)
125 PRK06130 3-hydroxybutyryl-CoA 94.8 0.15 3.2E-06 54.5 9.8 31 365-396 5-35 (311)
126 PRK13403 ketol-acid reductoiso 94.8 0.19 4.1E-06 54.8 10.5 38 357-395 9-46 (335)
127 PRK00676 hemA glutamyl-tRNA re 94.8 0.084 1.8E-06 57.8 7.9 37 361-397 171-207 (338)
128 PRK09186 flagellin modificatio 94.8 0.2 4.3E-06 50.9 10.1 33 362-395 2-35 (256)
129 PTZ00082 L-lactate dehydrogena 94.7 0.14 3E-06 55.6 9.3 35 362-396 4-38 (321)
130 PRK07523 gluconate 5-dehydroge 94.7 0.19 4.2E-06 51.2 10.0 35 361-396 7-42 (255)
131 PRK06436 glycerate dehydrogena 94.7 0.11 2.4E-06 56.0 8.3 36 360-396 118-153 (303)
132 TIGR00507 aroE shikimate 5-deh 94.6 0.26 5.7E-06 51.9 10.9 35 362-397 115-149 (270)
133 PLN02780 ketoreductase/ oxidor 94.6 0.19 4.2E-06 54.1 10.2 62 362-446 51-113 (320)
134 cd05191 NAD_bind_amino_acid_DH 94.6 0.065 1.4E-06 46.6 5.2 36 361-396 20-55 (86)
135 PRK06487 glycerate dehydrogena 94.6 0.11 2.4E-06 56.3 8.0 87 360-507 144-234 (317)
136 PRK08410 2-hydroxyacid dehydro 94.5 0.11 2.3E-06 56.2 7.8 89 360-507 141-233 (311)
137 PRK06522 2-dehydropantoate 2-r 94.5 0.21 4.5E-06 52.6 9.9 30 366-396 2-31 (304)
138 PRK06476 pyrroline-5-carboxyla 94.5 0.16 3.5E-06 52.8 8.9 89 366-505 2-92 (258)
139 PRK07574 formate dehydrogenase 94.5 0.19 4.2E-06 56.0 9.9 36 360-396 188-223 (385)
140 cd01075 NAD_bind_Leu_Phe_Val_D 94.4 0.33 7.2E-06 49.1 10.7 37 360-397 24-60 (200)
141 cd05290 LDH_3 A subgroup of L- 94.4 0.18 4E-06 54.4 9.3 31 366-396 1-32 (307)
142 COG0111 SerA Phosphoglycerate 94.4 0.19 4.1E-06 54.7 9.3 94 360-508 138-235 (324)
143 PRK06194 hypothetical protein; 94.3 0.28 6.1E-06 51.0 10.3 34 362-396 4-38 (287)
144 PRK07680 late competence prote 94.3 0.29 6.2E-06 51.5 10.4 31 366-396 2-35 (273)
145 PLN02688 pyrroline-5-carboxyla 94.3 0.35 7.5E-06 50.4 10.9 23 366-388 2-24 (266)
146 TIGR03589 PseB UDP-N-acetylglu 94.3 0.26 5.7E-06 52.9 10.3 36 362-397 2-39 (324)
147 PRK08217 fabG 3-ketoacyl-(acyl 94.3 0.19 4.1E-06 50.7 8.7 34 362-396 3-37 (253)
148 PRK00048 dihydrodipicolinate r 94.3 0.32 7E-06 51.0 10.6 91 365-509 2-94 (257)
149 KOG0069 Glyoxylate/hydroxypyru 94.2 0.18 4E-06 55.0 8.8 94 360-508 158-255 (336)
150 PRK13394 3-hydroxybutyrate deh 94.2 0.33 7.1E-06 49.4 10.3 35 361-396 4-39 (262)
151 PLN03209 translocon at the inn 94.2 0.58 1.3E-05 54.7 13.3 36 360-396 76-112 (576)
152 PRK05866 short chain dehydroge 94.2 0.3 6.5E-06 51.7 10.3 36 360-396 36-72 (293)
153 PTZ00075 Adenosylhomocysteinas 94.1 0.21 4.5E-06 57.0 9.2 37 360-397 250-286 (476)
154 PRK08293 3-hydroxybutyryl-CoA 94.1 0.091 2E-06 55.7 6.0 32 365-397 4-35 (287)
155 PRK06949 short chain dehydroge 94.0 0.25 5.3E-06 50.3 8.9 34 362-396 7-41 (258)
156 PRK08251 short chain dehydroge 94.0 0.29 6.4E-06 49.5 9.4 60 364-446 2-62 (248)
157 PF02719 Polysacc_synt_2: Poly 94.0 0.12 2.6E-06 55.5 6.7 79 367-483 1-86 (293)
158 PLN02306 hydroxypyruvate reduc 94.0 0.21 4.5E-06 55.7 8.9 106 360-506 161-272 (386)
159 PRK05867 short chain dehydroge 94.0 0.4 8.7E-06 48.9 10.4 34 362-396 7-41 (253)
160 PRK08339 short chain dehydroge 94.0 0.37 7.9E-06 50.0 10.2 35 362-397 6-41 (263)
161 PRK15438 erythronate-4-phospha 94.0 0.16 3.4E-06 56.5 7.8 57 333-396 91-147 (378)
162 PRK12480 D-lactate dehydrogena 94.0 0.24 5.2E-06 54.0 9.2 36 360-396 142-177 (330)
163 cd05293 LDH_1 A subgroup of L- 93.9 0.22 4.7E-06 53.9 8.7 33 364-396 3-36 (312)
164 PRK12429 3-hydroxybutyrate deh 93.9 0.44 9.5E-06 48.3 10.4 34 362-396 2-36 (258)
165 PRK12826 3-ketoacyl-(acyl-carr 93.9 0.38 8.3E-06 48.4 9.9 36 361-397 3-39 (251)
166 PRK07478 short chain dehydroge 93.8 0.38 8.3E-06 49.0 9.9 35 361-396 3-38 (254)
167 PRK12939 short chain dehydroge 93.8 0.51 1.1E-05 47.5 10.6 34 362-396 5-39 (250)
168 KOG4169 15-hydroxyprostaglandi 93.7 0.15 3.2E-06 53.0 6.5 88 362-482 3-91 (261)
169 PRK14618 NAD(P)H-dependent gly 93.7 0.34 7.3E-06 52.3 9.7 31 365-396 5-35 (328)
170 cd00300 LDH_like L-lactate deh 93.7 0.29 6.4E-06 52.5 9.1 30 367-396 1-31 (300)
171 PRK08277 D-mannonate oxidoredu 93.7 0.5 1.1E-05 48.9 10.6 36 361-397 7-43 (278)
172 PTZ00345 glycerol-3-phosphate 93.7 0.37 8E-06 53.4 10.1 112 363-510 10-133 (365)
173 PRK13304 L-aspartate dehydroge 93.7 0.37 8E-06 50.8 9.7 33 365-397 2-36 (265)
174 PRK09260 3-hydroxybutyryl-CoA 93.7 0.095 2E-06 55.5 5.3 32 365-397 2-33 (288)
175 PRK07679 pyrroline-5-carboxyla 93.7 0.52 1.1E-05 49.7 10.8 25 364-388 3-27 (279)
176 PF00106 adh_short: short chai 93.6 0.26 5.5E-06 46.7 7.7 91 365-486 1-92 (167)
177 PLN02427 UDP-apiose/xylose syn 93.6 0.47 1E-05 52.0 10.9 40 357-396 7-47 (386)
178 PRK10637 cysG siroheme synthas 93.6 0.35 7.5E-06 55.0 10.0 95 361-505 9-103 (457)
179 PLN02494 adenosylhomocysteinas 93.6 0.32 7E-06 55.4 9.6 35 362-397 252-286 (477)
180 PRK05479 ketol-acid reductoiso 93.6 0.47 1E-05 51.9 10.5 37 358-395 11-47 (330)
181 PLN02602 lactate dehydrogenase 93.6 0.27 5.9E-06 54.1 8.8 32 365-396 38-70 (350)
182 PRK07502 cyclohexadienyl dehyd 93.6 0.32 6.8E-06 52.0 9.1 33 364-396 6-39 (307)
183 PRK06138 short chain dehydroge 93.6 0.53 1.1E-05 47.6 10.3 34 362-396 3-37 (252)
184 PF03446 NAD_binding_2: NAD bi 93.6 0.15 3.2E-06 49.6 6.0 117 365-506 2-119 (163)
185 PRK06928 pyrroline-5-carboxyla 93.5 0.67 1.5E-05 49.0 11.4 94 365-508 2-100 (277)
186 PRK15409 bifunctional glyoxyla 93.5 0.21 4.5E-06 54.4 7.7 92 360-507 141-237 (323)
187 PF02254 TrkA_N: TrkA-N domain 93.5 0.65 1.4E-05 41.8 9.8 85 367-498 1-86 (116)
188 PTZ00325 malate dehydrogenase; 93.5 0.25 5.3E-06 53.8 8.2 36 361-396 5-42 (321)
189 PRK01438 murD UDP-N-acetylmura 93.5 0.37 8E-06 54.6 9.9 36 361-397 13-48 (480)
190 PRK07819 3-hydroxybutyryl-CoA 93.4 0.063 1.4E-06 57.2 3.4 32 365-397 6-37 (286)
191 PRK12384 sorbitol-6-phosphate 93.4 0.44 9.6E-06 48.6 9.5 33 364-397 2-35 (259)
192 PTZ00142 6-phosphogluconate de 93.4 0.53 1.2E-05 53.8 11.0 120 365-506 2-126 (470)
193 TIGR00465 ilvC ketol-acid redu 93.4 0.44 9.6E-06 51.7 9.8 31 362-393 1-31 (314)
194 PLN03139 formate dehydrogenase 93.3 0.29 6.3E-06 54.6 8.6 36 360-396 195-230 (386)
195 PRK07576 short chain dehydroge 93.3 0.41 8.9E-06 49.5 9.2 37 360-397 5-42 (264)
196 PRK13302 putative L-aspartate 93.2 0.48 1E-05 50.2 9.7 34 363-396 5-40 (271)
197 PRK11790 D-3-phosphoglycerate 93.2 0.32 7E-06 54.6 8.8 89 360-506 147-239 (409)
198 PRK00257 erythronate-4-phospha 93.2 0.23 5E-06 55.3 7.5 57 333-396 91-147 (381)
199 PF00070 Pyr_redox: Pyridine n 93.2 0.18 3.8E-06 43.0 5.3 31 366-397 1-31 (80)
200 PF13460 NAD_binding_10: NADH( 93.2 1.1 2.4E-05 43.2 11.5 86 367-501 1-91 (183)
201 PRK07326 short chain dehydroge 93.2 0.56 1.2E-05 47.0 9.7 34 362-396 4-38 (237)
202 PRK06198 short chain dehydroge 93.1 0.5 1.1E-05 48.2 9.3 37 361-397 3-40 (260)
203 PRK06172 short chain dehydroge 93.1 0.44 9.6E-06 48.4 8.9 34 362-396 5-39 (253)
204 TIGR03206 benzo_BadH 2-hydroxy 93.1 0.39 8.4E-06 48.5 8.5 34 362-396 1-35 (250)
205 PRK14620 NAD(P)H-dependent gly 93.1 0.75 1.6E-05 49.5 11.1 30 366-396 2-31 (326)
206 PRK05876 short chain dehydroge 93.0 0.53 1.2E-05 49.2 9.7 34 362-396 4-38 (275)
207 PRK12921 2-dehydropantoate 2-r 93.0 0.38 8.3E-06 50.8 8.6 30 366-396 2-31 (305)
208 PRK06125 short chain dehydroge 93.0 0.67 1.5E-05 47.4 10.2 35 362-397 5-40 (259)
209 PRK12439 NAD(P)H-dependent gly 93.0 0.46 1E-05 51.8 9.4 44 467-510 70-115 (341)
210 PRK12550 shikimate 5-dehydroge 93.0 0.14 3.1E-06 54.3 5.3 33 364-396 122-154 (272)
211 PLN02240 UDP-glucose 4-epimera 92.9 0.61 1.3E-05 50.0 10.1 34 362-396 3-37 (352)
212 PF01118 Semialdhyde_dh: Semia 92.9 0.78 1.7E-05 42.3 9.5 39 471-510 63-103 (121)
213 PF02558 ApbA: Ketopantoate re 92.8 0.33 7.1E-06 45.9 7.0 29 367-396 1-29 (151)
214 PRK06139 short chain dehydroge 92.8 0.37 7.9E-06 52.3 8.3 35 361-396 4-39 (330)
215 PRK08213 gluconate 5-dehydroge 92.8 0.44 9.5E-06 48.7 8.5 36 360-396 8-44 (259)
216 PRK05565 fabG 3-ketoacyl-(acyl 92.8 0.74 1.6E-05 46.2 9.9 34 362-395 3-37 (247)
217 PF02826 2-Hacid_dh_C: D-isome 92.8 0.18 3.9E-06 49.8 5.4 93 359-506 31-127 (178)
218 PRK09496 trkA potassium transp 92.7 1.1 2.3E-05 50.2 12.0 95 362-501 229-324 (453)
219 PRK08063 enoyl-(acyl carrier p 92.7 0.76 1.6E-05 46.4 9.9 30 362-391 2-32 (250)
220 PTZ00117 malate dehydrogenase; 92.6 0.17 3.7E-06 54.8 5.4 36 362-397 3-38 (319)
221 PRK06181 short chain dehydroge 92.6 0.78 1.7E-05 46.9 10.0 31 365-396 2-33 (263)
222 PRK06199 ornithine cyclodeamin 92.6 0.66 1.4E-05 51.6 10.0 78 364-486 155-235 (379)
223 TIGR03376 glycerol3P_DH glycer 92.5 0.69 1.5E-05 50.8 10.0 111 366-510 1-120 (342)
224 TIGR01832 kduD 2-deoxy-D-gluco 92.5 0.48 1E-05 47.9 8.2 34 362-396 3-37 (248)
225 PRK09599 6-phosphogluconate de 92.4 0.4 8.8E-06 51.2 7.9 116 366-506 2-119 (301)
226 PRK07453 protochlorophyllide o 92.4 0.72 1.6E-05 49.2 9.8 34 362-396 4-38 (322)
227 PRK06940 short chain dehydroge 92.4 0.84 1.8E-05 47.7 10.1 31 364-396 2-32 (275)
228 PRK07666 fabG 3-ketoacyl-(acyl 92.3 1 2.3E-05 45.3 10.4 36 361-397 4-40 (239)
229 PRK07066 3-hydroxybutyryl-CoA 92.3 0.25 5.4E-06 53.8 6.2 32 365-397 8-39 (321)
230 PRK06129 3-hydroxyacyl-CoA deh 92.3 0.4 8.7E-06 51.4 7.7 32 365-397 3-34 (308)
231 PRK08265 short chain dehydroge 92.3 0.6 1.3E-05 48.1 8.8 36 361-397 3-39 (261)
232 PRK07531 bifunctional 3-hydrox 92.3 0.89 1.9E-05 52.2 10.9 31 365-396 5-35 (495)
233 COG1893 ApbA Ketopantoate redu 92.2 0.61 1.3E-05 50.4 9.0 30 365-395 1-30 (307)
234 PRK09496 trkA potassium transp 92.2 1.2 2.5E-05 49.9 11.5 87 366-498 2-89 (453)
235 PRK06500 short chain dehydroge 92.2 0.6 1.3E-05 47.1 8.5 36 361-397 3-39 (249)
236 PRK07109 short chain dehydroge 92.2 0.58 1.3E-05 50.6 8.8 35 361-396 5-40 (334)
237 PRK07890 short chain dehydroge 92.1 0.8 1.7E-05 46.5 9.4 34 362-396 3-37 (258)
238 PRK05872 short chain dehydroge 92.1 0.53 1.2E-05 49.7 8.3 36 361-397 6-42 (296)
239 PRK08589 short chain dehydroge 92.1 0.7 1.5E-05 48.0 9.1 35 361-396 3-38 (272)
240 PRK06196 oxidoreductase; Provi 92.1 0.78 1.7E-05 48.8 9.6 35 361-396 23-58 (315)
241 PLN02253 xanthoxin dehydrogena 92.1 1 2.3E-05 46.6 10.3 36 360-396 14-50 (280)
242 PLN00106 malate dehydrogenase 92.1 0.4 8.6E-06 52.3 7.4 36 363-398 17-54 (323)
243 PRK08085 gluconate 5-dehydroge 92.1 1.1 2.3E-05 45.7 10.2 34 362-396 7-41 (254)
244 PRK05717 oxidoreductase; Valid 92.1 0.72 1.6E-05 47.1 8.9 35 362-397 8-43 (255)
245 PF01408 GFO_IDH_MocA: Oxidore 92.0 0.69 1.5E-05 41.7 7.8 86 366-504 2-91 (120)
246 PF10727 Rossmann-like: Rossma 92.0 0.29 6.2E-06 46.4 5.4 91 362-504 8-102 (127)
247 PRK06914 short chain dehydroge 92.0 0.72 1.6E-05 47.7 9.0 34 363-397 2-36 (280)
248 PRK08229 2-dehydropantoate 2-r 92.0 0.52 1.1E-05 50.8 8.2 32 365-397 3-34 (341)
249 PRK07774 short chain dehydroge 92.0 0.73 1.6E-05 46.6 8.8 36 361-397 3-39 (250)
250 PRK05653 fabG 3-ketoacyl-(acyl 91.9 0.8 1.7E-05 45.7 8.9 35 362-397 3-38 (246)
251 PTZ00431 pyrroline carboxylate 91.9 0.99 2.2E-05 47.3 9.9 85 363-506 2-90 (260)
252 PRK06046 alanine dehydrogenase 91.9 0.75 1.6E-05 49.9 9.3 76 364-486 129-205 (326)
253 PRK06270 homoserine dehydrogen 91.9 1 2.3E-05 49.2 10.4 22 365-386 3-24 (341)
254 PRK06057 short chain dehydroge 91.8 0.59 1.3E-05 47.7 8.0 36 361-397 4-40 (255)
255 PRK05855 short chain dehydroge 91.7 0.82 1.8E-05 52.1 9.8 37 359-396 310-347 (582)
256 COG1052 LdhA Lactate dehydroge 91.7 0.42 9.1E-06 52.1 7.1 93 360-508 142-238 (324)
257 PRK06545 prephenate dehydrogen 91.7 1.1 2.3E-05 49.3 10.3 31 365-396 1-31 (359)
258 PRK08303 short chain dehydroge 91.7 0.96 2.1E-05 48.4 9.7 36 361-397 5-41 (305)
259 PRK05786 fabG 3-ketoacyl-(acyl 91.6 0.98 2.1E-05 45.3 9.2 34 362-396 3-37 (238)
260 PRK11559 garR tartronate semia 91.6 0.84 1.8E-05 48.3 9.1 32 365-397 3-34 (296)
261 TIGR01763 MalateDH_bact malate 91.6 0.79 1.7E-05 49.4 9.0 32 365-396 2-33 (305)
262 PRK07102 short chain dehydroge 91.6 1.2 2.6E-05 45.0 9.9 32 365-397 2-34 (243)
263 PRK09880 L-idonate 5-dehydroge 91.5 1.4 3.1E-05 47.4 10.9 34 363-396 169-202 (343)
264 PRK12937 short chain dehydroge 91.5 1.1 2.3E-05 45.1 9.4 30 362-391 3-33 (245)
265 PRK07067 sorbitol dehydrogenas 91.5 1.2 2.7E-05 45.4 9.9 36 362-398 4-40 (257)
266 PLN02989 cinnamyl-alcohol dehy 91.5 1.2 2.7E-05 47.2 10.3 32 364-396 5-37 (325)
267 PRK12828 short chain dehydroge 91.4 1.1 2.4E-05 44.6 9.3 36 361-397 4-40 (239)
268 PRK12769 putative oxidoreducta 91.4 0.8 1.7E-05 54.3 9.6 35 362-397 325-359 (654)
269 PRK12829 short chain dehydroge 91.4 1.1 2.3E-05 45.7 9.3 35 361-396 8-43 (264)
270 PRK08374 homoserine dehydrogen 91.4 1.2 2.7E-05 48.6 10.4 107 365-505 3-121 (336)
271 PRK07097 gluconate 5-dehydroge 91.3 1.2 2.6E-05 45.8 9.8 35 361-396 7-42 (265)
272 PRK08267 short chain dehydroge 91.3 0.97 2.1E-05 46.2 8.9 31 365-396 2-33 (260)
273 PRK13529 malate dehydrogenase; 91.3 1.2 2.5E-05 51.9 10.2 111 360-505 291-415 (563)
274 COG1063 Tdh Threonine dehydrog 91.2 1.1 2.5E-05 48.9 9.9 97 366-505 171-269 (350)
275 cd01337 MDH_glyoxysomal_mitoch 91.2 0.56 1.2E-05 50.9 7.4 32 366-397 2-35 (310)
276 PRK06124 gluconate 5-dehydroge 91.2 0.91 2E-05 46.2 8.6 36 361-397 8-44 (256)
277 COG2085 Predicted dinucleotide 91.2 1.9 4.1E-05 44.3 10.7 92 365-508 2-95 (211)
278 PRK06935 2-deoxy-D-gluconate 3 91.2 0.98 2.1E-05 46.2 8.9 36 361-397 12-48 (258)
279 PRK12825 fabG 3-ketoacyl-(acyl 91.2 1 2.2E-05 45.0 8.7 29 362-390 4-33 (249)
280 PRK07035 short chain dehydroge 91.2 0.9 2E-05 46.1 8.5 35 361-396 5-40 (252)
281 TIGR00036 dapB dihydrodipicoli 91.2 1.2 2.6E-05 47.1 9.6 99 365-509 2-102 (266)
282 PRK12748 3-ketoacyl-(acyl-carr 91.1 1 2.3E-05 46.0 9.0 36 361-397 2-40 (256)
283 TIGR02622 CDP_4_6_dhtase CDP-g 91.1 1 2.2E-05 48.6 9.3 35 362-397 2-37 (349)
284 PRK12938 acetyacetyl-CoA reduc 91.1 1.4 3.1E-05 44.4 9.9 31 362-392 1-32 (246)
285 PRK07074 short chain dehydroge 91.1 1.4 3.1E-05 44.8 9.9 32 364-396 2-34 (257)
286 PRK06841 short chain dehydroge 91.0 1.2 2.5E-05 45.3 9.2 34 362-396 13-47 (255)
287 TIGR00872 gnd_rel 6-phosphoglu 91.0 0.51 1.1E-05 50.4 6.8 112 366-506 2-118 (298)
288 PRK07814 short chain dehydroge 91.0 1.6 3.6E-05 44.8 10.3 35 362-397 8-43 (263)
289 PF02423 OCD_Mu_crystall: Orni 91.0 0.77 1.7E-05 49.7 8.1 76 364-486 128-204 (313)
290 COG1064 AdhP Zn-dependent alco 90.9 2.4 5.1E-05 46.6 11.8 91 364-503 167-257 (339)
291 PRK06407 ornithine cyclodeamin 90.9 1.2 2.5E-05 48.1 9.4 78 363-486 116-194 (301)
292 PRK07806 short chain dehydroge 90.9 1.5 3.3E-05 44.2 9.9 35 361-396 3-38 (248)
293 COG1712 Predicted dinucleotide 90.9 1.1 2.4E-05 46.6 8.6 31 366-396 2-34 (255)
294 COG0300 DltE Short-chain dehyd 90.9 1.7 3.7E-05 46.2 10.3 61 362-446 4-65 (265)
295 PLN02852 ferredoxin-NADP+ redu 90.9 0.98 2.1E-05 52.0 9.2 43 363-407 25-69 (491)
296 PRK12744 short chain dehydroge 90.8 1.8 4E-05 44.2 10.5 33 361-393 5-38 (257)
297 PRK08594 enoyl-(acyl carrier p 90.8 0.98 2.1E-05 46.7 8.4 34 362-396 5-41 (257)
298 cd00650 LDH_MDH_like NAD-depen 90.7 0.88 1.9E-05 47.6 8.1 31 367-397 1-35 (263)
299 TIGR03026 NDP-sugDHase nucleot 90.7 1.6 3.5E-05 48.8 10.7 40 366-406 2-41 (411)
300 PRK07792 fabG 3-ketoacyl-(acyl 90.7 1.8 3.9E-05 46.0 10.6 36 360-396 8-44 (306)
301 PRK08416 7-alpha-hydroxysteroi 90.7 0.94 2E-05 46.5 8.2 34 360-394 4-38 (260)
302 PRK03562 glutathione-regulated 90.7 1.7 3.6E-05 51.5 11.2 89 364-499 400-489 (621)
303 cd01076 NAD_bind_1_Glu_DH NAD( 90.7 1.3 2.9E-05 45.7 9.3 38 360-397 27-64 (227)
304 cd02201 FtsZ_type1 FtsZ is a G 90.7 1.9 4.2E-05 46.4 10.8 108 365-505 1-120 (304)
305 PF05368 NmrA: NmrA-like famil 90.6 3.8 8.2E-05 41.4 12.4 92 367-503 1-98 (233)
306 PRK12746 short chain dehydroge 90.6 1.4 3.1E-05 44.7 9.3 30 361-390 3-33 (254)
307 cd05211 NAD_bind_Glu_Leu_Phe_V 90.6 0.37 8E-06 49.5 5.0 39 360-398 19-57 (217)
308 TIGR03325 BphB_TodD cis-2,3-di 90.5 0.97 2.1E-05 46.4 8.2 35 362-397 3-38 (262)
309 PLN02662 cinnamyl-alcohol dehy 90.4 1.6 3.5E-05 46.1 9.8 34 363-397 3-37 (322)
310 TIGR01772 MDH_euk_gproteo mala 90.4 0.56 1.2E-05 50.9 6.4 33 366-398 1-35 (312)
311 PRK12779 putative bifunctional 90.4 0.96 2.1E-05 56.0 9.2 96 363-485 305-403 (944)
312 COG0240 GpsA Glycerol-3-phosph 90.3 0.81 1.8E-05 49.9 7.5 106 365-510 2-109 (329)
313 PRK07024 short chain dehydroge 90.3 1.5 3.2E-05 45.0 9.2 33 364-397 2-35 (257)
314 TIGR03451 mycoS_dep_FDH mycoth 90.3 2.3 5E-05 46.0 11.1 34 363-396 176-209 (358)
315 TIGR02632 RhaD_aldol-ADH rhamn 90.2 1.6 3.6E-05 52.0 10.7 34 362-396 412-446 (676)
316 cd01339 LDH-like_MDH L-lactate 90.2 1.2 2.6E-05 47.6 8.8 31 367-397 1-31 (300)
317 PRK02705 murD UDP-N-acetylmura 90.2 2.1 4.5E-05 48.2 11.1 97 365-504 1-97 (459)
318 PRK08278 short chain dehydroge 90.1 2.3 5E-05 44.2 10.6 35 362-397 4-39 (273)
319 PRK07825 short chain dehydroge 90.1 0.85 1.8E-05 47.1 7.4 34 362-396 3-37 (273)
320 TIGR01505 tartro_sem_red 2-hyd 90.1 1 2.2E-05 47.7 8.0 31 366-397 1-31 (291)
321 PRK12862 malic enzyme; Reviewe 90.1 0.89 1.9E-05 55.0 8.4 40 360-399 189-230 (763)
322 TIGR02371 ala_DH_arch alanine 90.1 1.5 3.2E-05 47.7 9.4 75 364-485 128-203 (325)
323 PRK07454 short chain dehydroge 90.1 2.1 4.5E-05 43.2 10.0 32 364-396 6-38 (241)
324 PLN02896 cinnamyl-alcohol dehy 90.1 1.9 4E-05 46.7 10.2 34 362-396 8-42 (353)
325 PRK12859 3-ketoacyl-(acyl-carr 90.1 1.4 3E-05 45.3 8.8 35 360-395 2-39 (256)
326 PRK08655 prephenate dehydrogen 90.1 1.8 4E-05 49.0 10.5 30 366-396 2-32 (437)
327 PTZ00188 adrenodoxin reductase 90.1 1.5 3.2E-05 50.6 9.7 97 363-485 38-137 (506)
328 PRK06720 hypothetical protein; 90.0 1.4 3E-05 43.4 8.3 35 362-397 14-49 (169)
329 PRK08324 short chain dehydroge 90.0 1.4 3.1E-05 52.5 10.0 34 362-396 420-454 (681)
330 PRK12809 putative oxidoreducta 90.0 1.5 3.3E-05 51.9 10.1 35 363-398 309-343 (639)
331 PRK12771 putative glutamate sy 89.9 1.1 2.5E-05 52.0 8.9 35 362-397 135-169 (564)
332 PRK07984 enoyl-(acyl carrier p 89.9 1.2 2.5E-05 46.5 8.2 35 362-397 4-41 (262)
333 TIGR01850 argC N-acetyl-gamma- 89.9 1.6 3.4E-05 48.0 9.5 101 365-510 1-105 (346)
334 KOG0024 Sorbitol dehydrogenase 89.9 1.6 3.6E-05 47.5 9.3 34 363-396 169-202 (354)
335 PRK09291 short chain dehydroge 89.9 2.5 5.4E-05 42.9 10.4 31 364-395 2-33 (257)
336 PRK05708 2-dehydropantoate 2-r 89.8 0.39 8.6E-06 51.5 4.7 33 364-397 2-34 (305)
337 PRK09072 short chain dehydroge 89.8 1.7 3.6E-05 44.6 9.2 35 362-397 3-38 (263)
338 PLN02520 bifunctional 3-dehydr 89.7 0.41 8.9E-06 55.5 5.1 34 362-396 377-410 (529)
339 PRK12823 benD 1,6-dihydroxycyc 89.7 1.6 3.4E-05 44.6 8.8 37 360-397 4-41 (260)
340 PRK15181 Vi polysaccharide bio 89.6 1.8 4E-05 46.8 9.7 36 361-397 12-48 (348)
341 TIGR01757 Malate-DH_plant mala 89.5 1.5 3.3E-05 49.0 9.1 78 364-484 44-130 (387)
342 TIGR01318 gltD_gamma_fam gluta 89.5 1.5 3.3E-05 49.9 9.4 34 363-397 140-173 (467)
343 PRK02472 murD UDP-N-acetylmura 89.5 1.4 3.1E-05 49.2 9.1 35 362-397 3-37 (447)
344 COG0281 SfcA Malic enzyme [Ene 89.5 0.39 8.5E-06 53.7 4.3 62 360-430 195-258 (432)
345 PLN03129 NADP-dependent malic 89.5 1.6 3.6E-05 50.9 9.5 103 360-505 317-434 (581)
346 TIGR00065 ftsZ cell division p 89.5 2.2 4.7E-05 47.1 10.1 109 363-505 16-137 (349)
347 TIGR02415 23BDH acetoin reduct 89.4 2.2 4.8E-05 43.2 9.6 31 365-396 1-32 (254)
348 PRK07677 short chain dehydroge 89.4 1.6 3.6E-05 44.4 8.7 33 364-397 1-34 (252)
349 PRK08703 short chain dehydroge 89.4 1.6 3.6E-05 43.9 8.6 36 361-397 3-39 (239)
350 PRK11908 NAD-dependent epimera 89.3 4.8 0.0001 43.3 12.6 32 365-396 2-34 (347)
351 PRK08306 dipicolinate synthase 89.3 0.55 1.2E-05 50.4 5.3 35 361-396 149-183 (296)
352 TIGR01373 soxB sarcosine oxida 89.2 0.62 1.3E-05 51.3 5.8 45 363-407 29-74 (407)
353 PLN02650 dihydroflavonol-4-red 89.2 2.4 5.2E-05 45.7 10.2 33 363-396 4-37 (351)
354 PRK06079 enoyl-(acyl carrier p 89.2 1.4 3.1E-05 45.2 8.1 35 361-396 4-41 (252)
355 PRK12367 short chain dehydroge 89.1 0.68 1.5E-05 47.9 5.7 40 357-397 7-47 (245)
356 PRK05650 short chain dehydroge 89.1 2.6 5.5E-05 43.5 9.9 31 365-396 1-32 (270)
357 PRK07589 ornithine cyclodeamin 89.1 1.9 4E-05 47.6 9.2 76 364-486 129-205 (346)
358 PRK07201 short chain dehydroge 89.0 2 4.4E-05 50.3 10.2 36 360-396 367-403 (657)
359 PRK06200 2,3-dihydroxy-2,3-dih 89.0 1.3 2.9E-05 45.3 7.8 35 362-397 4-39 (263)
360 PRK06523 short chain dehydroge 89.0 1.4 2.9E-05 45.1 7.7 77 361-442 6-83 (260)
361 PRK10538 malonic semialdehyde 88.9 2.7 5.8E-05 42.8 9.8 30 366-396 2-32 (248)
362 PRK08628 short chain dehydroge 88.8 1.6 3.5E-05 44.5 8.1 35 361-396 4-39 (258)
363 cd08281 liver_ADH_like1 Zinc-d 88.8 3.2 7E-05 45.2 10.9 34 363-396 191-224 (371)
364 PLN02740 Alcohol dehydrogenase 88.6 3.8 8.2E-05 45.0 11.4 34 363-396 198-231 (381)
365 PRK07775 short chain dehydroge 88.6 3.5 7.5E-05 42.9 10.5 35 361-396 7-42 (274)
366 PRK14192 bifunctional 5,10-met 88.5 0.49 1.1E-05 50.6 4.3 35 361-396 156-191 (283)
367 PF01266 DAO: FAD dependent ox 88.4 0.73 1.6E-05 48.5 5.4 35 366-401 1-35 (358)
368 PRK12935 acetoacetyl-CoA reduc 88.4 3.1 6.8E-05 42.0 9.8 30 362-391 4-34 (247)
369 PRK08862 short chain dehydroge 88.3 1.8 3.8E-05 44.2 8.0 34 362-396 3-37 (227)
370 PRK08340 glucose-1-dehydrogena 88.3 1.8 3.8E-05 44.4 8.1 31 366-397 2-33 (259)
371 PRK12409 D-amino acid dehydrog 88.3 0.63 1.4E-05 51.3 5.0 33 365-398 2-34 (410)
372 COG0345 ProC Pyrroline-5-carbo 88.2 3.9 8.4E-05 43.6 10.6 92 365-508 2-97 (266)
373 cd08239 THR_DH_like L-threonin 88.2 4.5 9.7E-05 43.1 11.4 34 363-396 163-196 (339)
374 PRK08642 fabG 3-ketoacyl-(acyl 88.2 2.4 5.2E-05 42.8 8.9 30 362-391 3-33 (253)
375 TIGR01316 gltA glutamate synth 88.2 3.2 6.9E-05 46.9 10.7 35 362-397 131-165 (449)
376 PRK06035 3-hydroxyacyl-CoA deh 88.2 0.68 1.5E-05 49.1 5.0 33 365-398 4-36 (291)
377 PRK06223 malate dehydrogenase; 88.1 0.69 1.5E-05 49.4 5.1 32 365-396 3-34 (307)
378 TIGR01289 LPOR light-dependent 88.1 2.2 4.9E-05 45.5 9.0 35 363-397 2-37 (314)
379 PRK11730 fadB multifunctional 88.1 0.2 4.3E-06 60.1 1.0 32 365-397 314-345 (715)
380 PRK11259 solA N-methyltryptoph 88.0 0.67 1.5E-05 50.1 5.0 35 364-399 3-37 (376)
381 PRK08936 glucose-1-dehydrogena 88.0 2.9 6.2E-05 42.8 9.4 34 361-395 4-38 (261)
382 PRK08226 short chain dehydroge 88.0 2.6 5.6E-05 43.1 9.1 36 361-397 3-39 (263)
383 PLN02350 phosphogluconate dehy 88.0 3 6.5E-05 48.1 10.4 120 365-506 7-132 (493)
384 KOG1205 Predicted dehydrogenas 88.0 2.2 4.8E-05 45.7 8.7 94 356-481 4-98 (282)
385 PRK12827 short chain dehydroge 88.0 2.4 5.1E-05 42.6 8.6 33 362-395 4-37 (249)
386 PRK12490 6-phosphogluconate de 88.0 1.6 3.4E-05 46.7 7.7 31 366-397 2-32 (299)
387 PF02629 CoA_binding: CoA bind 87.9 4.2 9.1E-05 36.1 9.2 91 363-506 2-94 (96)
388 PRK06114 short chain dehydroge 87.9 3.5 7.5E-05 42.1 9.9 35 361-396 5-40 (254)
389 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.9 0.42 9.1E-06 55.1 3.5 33 364-397 5-37 (503)
390 COG0665 DadA Glycine/D-amino a 87.9 0.81 1.7E-05 49.5 5.5 44 363-407 3-46 (387)
391 cd08230 glucose_DH Glucose deh 87.8 4.3 9.4E-05 43.8 11.1 33 363-396 172-204 (355)
392 PF03447 NAD_binding_3: Homose 87.8 1.2 2.5E-05 40.7 5.7 38 467-505 50-89 (117)
393 PRK06128 oxidoreductase; Provi 87.8 2.1 4.5E-05 45.2 8.5 35 360-395 51-86 (300)
394 PRK09330 cell division protein 87.8 4.1 9E-05 45.5 11.0 112 360-505 9-133 (384)
395 PLN02653 GDP-mannose 4,6-dehyd 87.7 2.3 4.9E-05 45.6 8.8 34 362-396 4-38 (340)
396 PRK13018 cell division protein 87.7 4.3 9.2E-05 45.4 11.0 39 360-398 24-64 (378)
397 PRK13243 glyoxylate reductase; 87.6 0.74 1.6E-05 50.2 5.0 36 360-396 146-181 (333)
398 PRK00141 murD UDP-N-acetylmura 87.6 0.69 1.5E-05 52.7 4.9 38 359-397 10-47 (473)
399 PRK10217 dTDP-glucose 4,6-dehy 87.6 2.3 5E-05 45.7 8.8 32 365-396 2-34 (355)
400 TIGR03366 HpnZ_proposed putati 87.6 4.8 0.0001 42.1 10.9 34 363-396 120-153 (280)
401 TIGR01759 MalateDH-SF1 malate 87.5 1.7 3.7E-05 47.4 7.7 32 365-396 4-42 (323)
402 PRK06113 7-alpha-hydroxysteroi 87.4 2.6 5.7E-05 43.0 8.6 34 361-395 8-42 (255)
403 CHL00194 ycf39 Ycf39; Provisio 87.4 5 0.00011 42.8 11.1 30 366-396 2-32 (317)
404 TIGR00561 pntA NAD(P) transhyd 87.3 1.7 3.6E-05 50.3 7.8 35 361-396 161-195 (511)
405 PRK05599 hypothetical protein; 87.3 2.6 5.6E-05 43.1 8.6 29 366-396 2-31 (246)
406 PRK05557 fabG 3-ketoacyl-(acyl 87.3 4 8.7E-05 40.7 9.8 32 362-393 3-35 (248)
407 cd05292 LDH_2 A subgroup of L- 87.3 0.84 1.8E-05 49.2 5.1 32 366-397 2-34 (308)
408 PRK06823 ornithine cyclodeamin 87.3 2.7 5.9E-05 45.6 9.0 77 363-486 127-204 (315)
409 TIGR03466 HpnA hopanoid-associ 87.2 2.3 5.1E-05 44.6 8.4 31 366-397 2-33 (328)
410 PRK06249 2-dehydropantoate 2-r 87.2 0.82 1.8E-05 49.1 5.0 34 364-398 5-38 (313)
411 PLN02986 cinnamyl-alcohol dehy 87.2 3.5 7.6E-05 43.7 9.8 29 363-392 4-33 (322)
412 TIGR02437 FadB fatty oxidation 87.2 0.26 5.7E-06 59.1 1.3 32 365-397 314-345 (714)
413 PRK08264 short chain dehydroge 87.2 0.89 1.9E-05 45.7 5.0 37 362-398 4-41 (238)
414 TIGR01963 PHB_DH 3-hydroxybuty 87.1 4.4 9.6E-05 40.8 10.1 32 365-397 2-34 (255)
415 PRK15461 NADH-dependent gamma- 87.1 2.4 5.2E-05 45.3 8.5 32 365-397 2-33 (296)
416 PRK07889 enoyl-(acyl carrier p 87.1 1.6 3.5E-05 44.9 7.0 36 361-397 4-42 (256)
417 PRK09135 pteridine reductase; 87.1 3.6 7.7E-05 41.3 9.3 33 363-396 5-38 (249)
418 PRK08945 putative oxoacyl-(acy 87.1 2.4 5.2E-05 43.0 8.1 38 360-398 8-46 (247)
419 TIGR01181 dTDP_gluc_dehyt dTDP 87.1 2.8 6.1E-05 43.6 8.8 31 366-396 1-33 (317)
420 PLN00141 Tic62-NAD(P)-related 87.0 9.1 0.0002 39.2 12.4 35 358-393 11-46 (251)
421 PRK05884 short chain dehydroge 86.9 2.6 5.7E-05 42.5 8.2 31 366-397 2-33 (223)
422 PRK08643 acetoin reductase; Va 86.9 5.5 0.00012 40.5 10.7 32 364-396 2-34 (256)
423 PRK07533 enoyl-(acyl carrier p 86.8 2.8 6.2E-05 43.2 8.6 37 360-397 6-45 (258)
424 PLN02657 3,8-divinyl protochlo 86.8 3.1 6.7E-05 46.2 9.4 34 362-396 58-92 (390)
425 PLN02968 Probable N-acetyl-gam 86.7 2.3 5.1E-05 47.4 8.3 96 363-505 37-133 (381)
426 PRK08690 enoyl-(acyl carrier p 86.7 2.5 5.5E-05 43.6 8.2 35 360-395 2-39 (261)
427 PRK06505 enoyl-(acyl carrier p 86.6 2.9 6.2E-05 43.7 8.6 34 362-396 5-41 (271)
428 KOG1201 Hydroxysteroid 17-beta 86.5 2.8 6E-05 45.2 8.4 93 358-454 32-131 (300)
429 PRK09310 aroDE bifunctional 3- 86.5 0.93 2E-05 51.9 5.2 34 362-396 330-363 (477)
430 PRK07424 bifunctional sterol d 86.5 3.4 7.4E-05 46.5 9.5 35 361-396 175-210 (406)
431 PRK09730 putative NAD(P)-bindi 86.4 4.1 8.9E-05 40.9 9.3 26 365-390 2-28 (247)
432 PRK12936 3-ketoacyl-(acyl-carr 86.3 4.8 0.0001 40.3 9.8 34 362-396 4-38 (245)
433 PRK06947 glucose-1-dehydrogena 86.3 2.9 6.3E-05 42.2 8.2 26 365-390 3-29 (248)
434 PRK06567 putative bifunctional 86.3 2 4.2E-05 53.3 8.0 41 362-403 381-421 (1028)
435 PF08659 KR: KR domain; Inter 86.3 5.3 0.00011 39.3 9.8 59 366-445 2-61 (181)
436 PRK07530 3-hydroxybutyryl-CoA 86.2 1 2.2E-05 47.7 5.1 33 364-397 4-36 (292)
437 PLN02214 cinnamoyl-CoA reducta 86.2 3.8 8.3E-05 44.3 9.6 35 361-396 7-42 (342)
438 TIGR00873 gnd 6-phosphoglucona 86.2 1.9 4E-05 49.4 7.4 120 366-506 1-123 (467)
439 cd05297 GH4_alpha_glucosidase_ 86.2 2.8 6.2E-05 47.2 8.8 33 365-397 1-38 (423)
440 PRK03659 glutathione-regulated 86.2 3.4 7.4E-05 48.7 9.8 89 364-499 400-489 (601)
441 PRK07791 short chain dehydroge 86.2 3.4 7.4E-05 43.4 8.9 35 361-396 3-38 (286)
442 PRK05808 3-hydroxybutyryl-CoA 86.2 0.96 2.1E-05 47.7 4.8 32 365-397 4-35 (282)
443 PRK07985 oxidoreductase; Provi 86.1 3.4 7.3E-05 43.7 8.9 34 361-395 46-80 (294)
444 PRK06182 short chain dehydroge 86.1 3.1 6.8E-05 42.9 8.5 33 363-396 2-35 (273)
445 PRK06077 fabG 3-ketoacyl-(acyl 86.1 3.1 6.6E-05 42.0 8.3 30 362-391 4-34 (252)
446 COG0039 Mdh Malate/lactate deh 86.0 0.91 2E-05 49.3 4.5 33 365-397 1-34 (313)
447 PRK12743 oxidoreductase; Provi 86.0 3.3 7.1E-05 42.4 8.5 30 364-394 2-32 (256)
448 PRK13303 L-aspartate dehydroge 86.0 4.4 9.5E-05 42.8 9.6 31 365-395 2-33 (265)
449 PRK12742 oxidoreductase; Provi 86.0 3.8 8.3E-05 41.0 8.8 33 361-394 3-36 (237)
450 PRK12810 gltD glutamate syntha 85.8 3.5 7.6E-05 46.9 9.4 34 363-397 142-175 (471)
451 PRK07904 short chain dehydroge 85.8 6.8 0.00015 40.3 10.7 33 364-396 8-41 (253)
452 PLN02545 3-hydroxybutyryl-CoA 85.7 1.1 2.4E-05 47.5 5.0 32 365-397 5-36 (295)
453 COG1250 FadB 3-hydroxyacyl-CoA 85.7 0.47 1E-05 51.3 2.2 33 364-397 3-35 (307)
454 TIGR01377 soxA_mon sarcosine o 85.6 1 2.3E-05 48.7 4.9 33 366-399 2-34 (380)
455 PRK05225 ketol-acid reductoiso 85.6 2.6 5.6E-05 48.1 7.9 34 358-391 30-63 (487)
456 PRK07069 short chain dehydroge 85.6 4.4 9.4E-05 40.9 9.1 30 366-396 1-31 (251)
457 PRK08415 enoyl-(acyl carrier p 85.5 3.6 7.9E-05 43.1 8.7 35 362-397 3-40 (274)
458 PRK04207 glyceraldehyde-3-phos 85.4 3.8 8.2E-05 45.0 9.1 37 468-505 72-108 (341)
459 TIGR01500 sepiapter_red sepiap 85.3 4.7 0.0001 41.3 9.3 58 366-446 2-64 (256)
460 PRK12814 putative NADPH-depend 85.1 4.2 9E-05 48.4 9.9 34 363-397 192-225 (652)
461 PRK07832 short chain dehydroge 85.0 3.5 7.6E-05 42.6 8.2 31 365-396 1-32 (272)
462 PRK06392 homoserine dehydrogen 84.9 5.1 0.00011 43.8 9.7 31 366-396 2-40 (326)
463 PRK07856 short chain dehydroge 84.9 2.9 6.3E-05 42.6 7.5 77 362-443 4-82 (252)
464 cd05296 GH4_P_beta_glucosidase 84.7 2.6 5.6E-05 47.6 7.5 95 366-500 2-103 (419)
465 PRK06349 homoserine dehydrogen 84.6 4.5 9.7E-05 45.7 9.4 22 364-385 3-24 (426)
466 PRK08818 prephenate dehydrogen 84.6 4.7 0.0001 44.9 9.4 35 362-396 2-37 (370)
467 TIGR01472 gmd GDP-mannose 4,6- 84.6 4.1 8.9E-05 43.8 8.8 31 365-396 1-32 (343)
468 PRK00711 D-amino acid dehydrog 84.5 1.3 2.8E-05 48.8 5.0 32 366-398 2-33 (416)
469 PRK00811 spermidine synthase; 84.5 3.3 7.2E-05 44.1 7.9 34 363-398 76-110 (283)
470 PRK13984 putative oxidoreducta 84.5 2.9 6.2E-05 49.0 8.1 35 363-398 282-316 (604)
471 PRK10084 dTDP-glucose 4,6 dehy 84.4 4.2 9E-05 43.7 8.8 31 366-396 2-33 (352)
472 COG2227 UbiG 2-polyprenyl-3-me 84.4 2.9 6.3E-05 43.8 7.2 64 313-396 26-89 (243)
473 PLN00198 anthocyanidin reducta 84.4 6.6 0.00014 42.0 10.3 35 362-397 7-42 (338)
474 PRK12775 putative trifunctiona 84.4 3.9 8.5E-05 51.1 9.6 34 363-397 429-462 (1006)
475 PRK06701 short chain dehydroge 84.4 4.2 9E-05 42.9 8.6 36 360-396 42-78 (290)
476 PRK15076 alpha-galactosidase; 84.3 3.3 7.2E-05 46.9 8.2 33 365-397 2-39 (431)
477 PRK10537 voltage-gated potassi 84.3 3.6 7.8E-05 46.1 8.4 90 362-500 238-328 (393)
478 COG1062 AdhC Zn-dependent alco 84.3 6.4 0.00014 43.4 9.9 100 363-505 185-285 (366)
479 PRK08993 2-deoxy-D-gluconate 3 84.1 6.4 0.00014 40.2 9.6 34 361-395 7-41 (253)
480 PRK09853 putative selenate red 84.1 2.9 6.3E-05 52.1 8.1 36 362-398 537-572 (1019)
481 PF10087 DUF2325: Uncharacteri 84.0 6 0.00013 35.2 8.2 68 421-505 10-81 (97)
482 TIGR01771 L-LDH-NAD L-lactate 83.9 2.4 5.2E-05 45.7 6.6 28 369-396 1-29 (299)
483 PRK07370 enoyl-(acyl carrier p 83.9 4.8 0.0001 41.6 8.6 33 362-395 4-39 (258)
484 PRK12778 putative bifunctional 83.9 5 0.00011 48.5 9.9 35 362-397 429-463 (752)
485 PLN02827 Alcohol dehydrogenase 83.8 8.8 0.00019 42.2 11.1 34 363-396 193-226 (378)
486 PRK09987 dTDP-4-dehydrorhamnos 83.8 4.8 0.0001 42.6 8.8 30 366-397 2-32 (299)
487 PRK06603 enoyl-(acyl carrier p 83.6 5.2 0.00011 41.3 8.8 36 361-397 5-43 (260)
488 PRK01747 mnmC bifunctional tRN 83.6 1.3 2.9E-05 52.5 4.9 36 364-400 260-296 (662)
489 PF01494 FAD_binding_3: FAD bi 83.5 1.4 3.1E-05 46.3 4.6 34 365-399 2-35 (356)
490 PRK10669 putative cation:proto 83.5 5.5 0.00012 46.4 9.8 33 364-397 417-449 (558)
491 PRK10309 galactitol-1-phosphat 83.4 11 0.00024 40.3 11.5 34 363-396 160-193 (347)
492 PRK02318 mannitol-1-phosphate 83.3 0.78 1.7E-05 50.9 2.6 46 366-412 2-48 (381)
493 TIGR02441 fa_ox_alpha_mit fatt 83.3 0.38 8.3E-06 57.9 0.2 32 365-397 336-367 (737)
494 PRK12481 2-deoxy-D-gluconate 3 83.2 5 0.00011 41.1 8.4 34 362-396 6-40 (251)
495 PRK07060 short chain dehydroge 83.1 1.9 4.1E-05 43.3 5.2 34 362-396 7-41 (245)
496 PRK05671 aspartate-semialdehyd 83.1 4.7 0.0001 44.3 8.5 38 472-510 64-103 (336)
497 PRK12770 putative glutamate sy 83.0 7.6 0.00016 42.2 10.1 112 363-484 17-128 (352)
498 PRK11101 glpA sn-glycerol-3-ph 82.9 1.6 3.5E-05 50.7 5.1 36 364-400 6-41 (546)
499 PLN02206 UDP-glucuronate decar 82.9 8.6 0.00019 43.6 10.8 35 361-396 116-151 (442)
500 TIGR01214 rmlD dTDP-4-dehydror 82.9 9.9 0.00022 39.3 10.6 30 366-396 1-31 (287)
No 1
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.4e-172 Score=1375.22 Aligned_cols=633 Identities=51% Similarity=0.857 Sum_probs=568.0
Q ss_pred CCceeeecCccCCChhhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCc
Q 005745 12 GSILQFAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRN 91 (679)
Q Consensus 12 ~~~l~f~p~~s~vd~~Fw~~L~~~KL~~~kLd~~~~~i~g~~~~~~~~~~~~~~~l~~~sf~~~~~~~~~~~~~~~~~~~ 91 (679)
+.+|||+||.|++|++|||+|+++|||+|||||+|+.|+|+|++.+..+ +++++++.+|+.... ..
T Consensus 5 ~~~LqFaPf~S~lD~~FWhels~~KLd~~kLD~sP~~I~~~~~~~~~sg--~~lsl~~~~~~~~~~------------~~ 70 (669)
T KOG2337|consen 5 EIILQFAPFESFLDTGFWHELSELKLDKLKLDDSPKSITGHLTNRNASG--CLLSLSYGAFNSLAN------------TP 70 (669)
T ss_pred cceeeecchhhhcchHHHHHHHhhhcchhcccCCcceeeceeccCCCcc--ceEEEecccccccCC------------CC
Confidence 3689999999999999999999999999999999999999999988776 899999999976521 12
Q ss_pred eeeeeeeEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccchheeeeeccCCcEEEEEeEeeccCCCCCe
Q 005745 92 KCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPA 171 (679)
Q Consensus 92 ~~~~~G~l~n~NT~e~fk~~dk~~ll~~~~~~i~~~i~~g~~~~~~~~l~~F~~~tfaDLKky~f~YwfafPal~~~~~~ 171 (679)
.+++.|||||+||+|+||++||+.|++++|++||++|++|++++||++|++|+|||||||||||||||||||||..+.+.
T Consensus 71 ~~~a~Gtl~N~NT~esFk~lDK~~ll~~ea~eiwesi~sG~aledP~lL~rFliisFADLKky~fyYW~~fPal~~~~~~ 150 (669)
T KOG2337|consen 71 GCPAIGTLYNTNTLESFKNLDKQLLLEQEAEEIWESIKSGKALEDPNLLSRFLIISFADLKKYKFYYWFCFPALVLPEPV 150 (669)
T ss_pred CCccceeeeccccHHHHhhhhHHHHHHHHHHHHHHhhccCccccChhhhhhhhhhhhhhhhhheeEEEeecchhhcCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999988887664
Q ss_pred eeeccCcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEEeCCCcceeeccccchhhcCCC-ccEEEEEEcCCCCCC
Q 005745 172 TVVDLKPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDG-QKLLFGFYDPCHLQN 250 (679)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~Dps~~~~ 250 (679)
......|.++.++... .+.++++.|+........|||+++.+++..+.+.+|+++..+..+. +.++ +++|||..++
T Consensus 151 ~~I~~~p~~~~~s~~~--~l~~~~~~~~d~~~~~~~pffl~s~ss~~~~~~~~l~~ld~c~~~~~k~~~-~~~D~~~la~ 227 (669)
T KOG2337|consen 151 SLIKDLPPSQEFSPKG--SLGAACNILFDTARVYNFPFFLLSKSSDDESKILELSELDNCQGNHTKICL-VVYDPSQLAS 227 (669)
T ss_pred hhhcccCchhccCccc--chHHHHHHHHhhhcccccceEEEEccccchhhhhhhhhhhhcccCCceEEE-Eecccccccc
Confidence 4333455556666665 5677888999888788999999998887778888889888877654 4566 9999999999
Q ss_pred CCChHHHHHHHHHHhhcCceeEEEEEEEeCCCc-ccCCCceEEEEEeecCCCCCCCCCCccccceEec-CCcccceEecc
Q 005745 251 HPGWPLRNFLALILTRWKLKSVLFLCYRENRGF-TDLGLSLVGEALITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (679)
Q Consensus 251 ~pgw~lrN~l~~~~~~~~~~~~~v~~~R~~~~~-~~~~~S~~~~~~~~~~~~~~~~~~~~~~~gwe~~-~Gkl~p~~~dl 328 (679)
+||||+||+|++++++|.++.+.++|||+.++. ++++.++.+.+..+.. ...+..|++||||+| +||++||+|||
T Consensus 228 ~pgwplrN~La~~~~~~~~~~i~~~~lR~~~~~~~~~s~~~~~~~~~~~~---~s~~~~~k~VGWErN~~Gkl~PR~V~L 304 (669)
T KOG2337|consen 228 YPGWPLRNFLALAAHRWPLKHIHFFLLRDRQNMGIDLSLVIKFAVTLACD---LSQNAVPKAVGWERNKNGKLGPRMVDL 304 (669)
T ss_pred cCChhhHHHHHHHHhhcccceeEEEEEEeccccCccceeEEEEEEecccc---ccccCCccccceeeccCCCcCceEEeh
Confidence 999999999999999999999999999997643 3555555555555543 235578999999999 89999999999
Q ss_pred cCCCChhhhhhhhhhhhhhhhhhhcCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCc
Q 005745 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (679)
Q Consensus 329 ~~~~dp~~la~~~~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~ 408 (679)
+.+|||.+|+|+++|||+++||||++|+++++++++.|||++|||+|||+|||+|++|||+|||+||+++|++||++||.
T Consensus 305 s~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQs 384 (669)
T KOG2337|consen 305 SDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQS 384 (669)
T ss_pred hhccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHH
Q 005745 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (679)
Q Consensus 409 L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR 488 (679)
||+++||..+|++||++|+++|++|||.++..++.++||||||||+.+.+++...+.+.++++|++||+||++||+||+|
T Consensus 385 Ly~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR 464 (669)
T KOG2337|consen 385 LYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR 464 (669)
T ss_pred hhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhh
Confidence 99999998889999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEeeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCC
Q 005745 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDS 568 (679)
Q Consensus 489 ~lin~~~~~~~kp~I~aalG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s 568 (679)
|+++.+|..++|.+||+|+|||+|+|||||.++..... + .+... ...+++.++|||||+||+||+||
T Consensus 465 WLPtll~a~~~KivINaALGFDsylVMRHG~~~~~~~~--------d----~q~s~-~~~i~~~qLGCYFCnDV~AP~nS 531 (669)
T KOG2337|consen 465 WLPTLLAAAKNKIVINAALGFDSYLVMRHGTGRKEASD--------D----GQSSD-LKCINGDQLGCYFCNDVVAPGNS 531 (669)
T ss_pred hhHHHHHhhhcceEeeeecccceeEEEecCCCCccccc--------c----ccccc-ccccCcccceeEeEcceecCCCc
Confidence 99999999999999999999999999999987632111 1 11111 12356789999999999999999
Q ss_pred CccccccccccccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccC
Q 005745 569 TANRTLDQQCTVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGH 648 (679)
Q Consensus 569 ~~drtLdq~CtV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~ 648 (679)
+.||||||||||+|||+++||+++|||+|+++||||.| +|-+......+. +++++||.+||||||||++|+++++.++
T Consensus 532 l~DRTLDQqCTVtRPG~a~IA~alAVELlvslLQhP~~-~a~~~s~~~~~n-~~~tvLG~lPHQIRGfL~nFs~i~~~~~ 609 (669)
T KOG2337|consen 532 LTDRTLDQQCTVTRPGVANIASALAVELLVSLLQHPLG-YAQNSSEETEEN-EPTTVLGILPHQIRGFLHNFSNILPSTQ 609 (669)
T ss_pred ccccchhheeeccCCchhHHHHHHHHHHHHHHHhCccc-cccCCCcccccC-CCCcccccccHHHHHhhhhhhhhccccc
Confidence 99999999999999999999999999999999999965 555433332222 4579999999999999999999999999
Q ss_pred CCCCCccCCcccccc-ccchhHHHHHHhcCCC
Q 005745 649 SSNSCTACCSTVRSD-NSILFYFLNQVLNGVL 679 (679)
Q Consensus 649 ~~~~C~aCs~~v~~~-~~~g~~fv~~~~n~~~ 679 (679)
+|++|+|||++|+++ +++||.||.+|||+|.
T Consensus 610 af~qC~ACS~~Vi~ey~~eGw~Fv~ka~n~p~ 641 (669)
T KOG2337|consen 610 AFDQCTACSEAVINEYKREGWAFVLKAFNSPK 641 (669)
T ss_pred cccccchhhHHHHHHHHHhhHHHHHHHhcCcc
Confidence 999999999999999 9999999999999873
No 2
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=3.4e-163 Score=1364.23 Aligned_cols=623 Identities=44% Similarity=0.727 Sum_probs=560.9
Q ss_pred eecCccCCChhhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCceeeee
Q 005745 17 FAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRNKCTVP 96 (679)
Q Consensus 17 f~p~~s~vd~~Fw~~L~~~KL~~~kLd~~~~~i~g~~~~~~~~~~~~~~~l~~~sf~~~~~~~~~~~~~~~~~~~~~~~~ 96 (679)
|+||+|+||++|||+|+++|||++||||+|++|+|+|++++..+.+++++|+++||+++.. ...+.+.++++
T Consensus 1 f~pf~S~vd~~Fw~~Ls~~KL~~~kLdds~~~i~g~y~~~~~~~~~~~l~l~~~sf~~~~~--------~~~~~~~~~~~ 72 (664)
T TIGR01381 1 FVPFVSCVDTGFWNEVSKLKLNKWKLDDTPKCISGQLSLHQTEGFKCHLSLSYDSLSSLES--------TTGTHAQLSVS 72 (664)
T ss_pred CCCcccccCcHHHHHHHhhhcccccCCCCceeEEEEEeccCCCCCCceEEEehhhCCcccc--------ccCCCCceEEE
Confidence 8999999999999999999999999999999999999999888888999999999975421 01245678999
Q ss_pred eeEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccchheeeeeccCCcEEEEEeEeeccCCCCCeeeecc
Q 005745 97 GTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDL 176 (679)
Q Consensus 97 G~l~n~NT~e~fk~~dk~~ll~~~~~~i~~~i~~g~~~~~~~~l~~F~~~tfaDLKky~f~YwfafPal~~~~~~~~~~~ 176 (679)
|+|+|+||||+||++||++||+++|++||++|.+|+++++|++|++|+||||||||||||||||||||++++++|++.+.
T Consensus 73 G~l~N~NTiE~Fk~~DK~~ll~~~~~~i~~~i~~g~~~~~pslL~~F~ilsfADLKky~f~YWfafPal~~~~~~~~~~~ 152 (664)
T TIGR01381 73 GILLNYNTVESFKKVDKSDLLRSEAEKIWESIQTRKWLQDPSLLSQFFIISFADLKKFKFYYWFCFPALVYPSKVNKLSG 152 (664)
T ss_pred EEEEecccHHHHHhhhHHHHHHHHHHHHHHHHhcCCcccCHHHHHhhHhhhhhhcccceEEEEEEEcccCCCCcceEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998664
Q ss_pred CcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEEeCCCcceeeccccchhhcCCCccEEEEEEcCCCCCCCCChHH
Q 005745 177 KPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPCHLQNHPGWPL 256 (679)
Q Consensus 177 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~Dps~~~~~pgw~l 256 (679)
....+.++.++.+.+.+.+++|++.....+.+||++++..+..+++.+|++|+.. .+..++ +|+|||+++++|||||
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ffl~~~~~~~~~~~~~l~~~~~~--~~~~~~-~f~Dps~~~~~Pgw~l 229 (664)
T TIGR01381 153 LTESIKQEITPLESLGADHKILFDFYRKNNFPFFLYSKQSSKMLELSELENNTNP--DDELCV-GFADPSPVAYSAGWML 229 (664)
T ss_pred cccccccCchhhHHHHHHHHHHHhhcccccccEEEEEecCCCceeEeehhhcccC--CCceEE-EEEcCCCCCCCCCHHH
Confidence 3333447777788888999999998766778999998765667788888888732 222377 9999999999999999
Q ss_pred HHHHHHHHhhcC-ceeEEEEEEEeCCCcccCCCceEEEEE------eecCCCCCCCCCCccccceEec-CCcccceEecc
Q 005745 257 RNFLALILTRWK-LKSVLFLCYRENRGFTDLGLSLVGEAL------ITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (679)
Q Consensus 257 rN~l~~~~~~~~-~~~~~v~~~R~~~~~~~~~~S~~~~~~------~~~~~~~~~~~~~~~~~gwe~~-~Gkl~p~~~dl 328 (679)
||||++++++|+ +++++|+|||+... . +|++++++ ++.. ...+..|+++|||+| +||++||++||
T Consensus 230 RN~L~~l~~~~~~~~~~~vl~~R~~~~---~-~s~~~~~~~~~~~~~~~~---~~~~~~pk~~GWErn~~GKl~pr~~dL 302 (664)
T TIGR01381 230 RNVLAAVAHLHPTWKHVHIFSLRSADS---I-GIKYLWTTLLPSAELSSD---GAQNAVPKAVGWERNANGKLQPISVDL 302 (664)
T ss_pred HHHHHHHHHhcCCCceEEEEEEecCCC---C-CcEEEEEeeccccccCcc---cccccCcccccccccCCCCcCceEech
Confidence 999999999997 88999999998632 2 79999998 4421 112225999999999 99999999999
Q ss_pred cCCCChhhhhhhhhhhhhhhhhhhcCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCc
Q 005745 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (679)
Q Consensus 329 ~~~~dp~~la~~~~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~ 408 (679)
+++|||.+|+++++|||+||||||++|++++++|+++||+|||||||||+||++|++||||+|||||+|+|++|||+||+
T Consensus 303 ~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~ 382 (664)
T TIGR01381 303 SKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQS 382 (664)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHH
Q 005745 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (679)
Q Consensus 409 L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR 488 (679)
||+++|+..+|++||++|+++|++|||+|+++++..+||||||++++.++++...+.+++.+++++||+||+|+||+|+|
T Consensus 383 Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR 462 (664)
T TIGR01381 383 LSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR 462 (664)
T ss_pred ccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH
Confidence 99999998889999999999999999999999999999999999987667777888899999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEeeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCC
Q 005745 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDS 568 (679)
Q Consensus 489 ~lin~~~~~~~kp~I~aalG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s 568 (679)
|++|++|.+++||+|++++||+||++||||..+....+...+ .+.....++|||||+|+++|.++
T Consensus 463 ~L~n~~c~~~~kplI~aAlGfdg~lvmrhG~~~~~~~~~~~~---------------~~~~~~~~~gCYfC~Dv~aP~~s 527 (664)
T TIGR01381 463 WLPTVLCSRHKKIAISAALGFDSYVVMRHGIGRSESVSDVSS---------------SDSVPYSRLGCYFCNDVTAPGDS 527 (664)
T ss_pred HHHHHHHHHhCCCEEEEEeccceEEEEEeccccccccccccc---------------ccccCCCCCCccccCCCCCCCcc
Confidence 999999999999999999999999999999865321111000 00112347999999999999999
Q ss_pred CccccccccccccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccC
Q 005745 569 TANRTLDQQCTVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGH 648 (679)
Q Consensus 569 ~~drtLdq~CtV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~ 648 (679)
+.+|||||||||+|||+++||+++|+|+|++|+|||++.+||+...+ ..++||.+||||||||++|+++++.++
T Consensus 528 ~~~rtlDqqCtVtrPgv~~ias~~AvEll~~llqhp~~~~ap~~~~~------~~~~lG~~Phqirg~l~~f~~~~~~~~ 601 (664)
T TIGR01381 528 TTDRTLDQQCTVTRPGTAMIASGLAVELLVSVLQHPLPSKTPASHDD------NTTVLGALPHQIRGFLGRFQQILLSVK 601 (664)
T ss_pred cccccccccceEecchHHHHHHHHHHHHHHHHhcCCcccCCCCcCCC------CCCccccCCceeeeehhhCeeeeeccc
Confidence 99999999999999999999999999999999999999999987532 238999999999999999999999999
Q ss_pred CCCCCccCCcccccc-ccchhHHHHHHhcCC
Q 005745 649 SSNSCTACCSTVRSD-NSILFYFLNQVLNGV 678 (679)
Q Consensus 649 ~~~~C~aCs~~v~~~-~~~g~~fv~~~~n~~ 678 (679)
+|++|+|||++|+++ +++||+||++|+|++
T Consensus 602 ~~~~C~aCs~~v~~~y~~~g~~fv~~~~~~~ 632 (664)
T TIGR01381 602 RFDQCVACSDAVAAEYQQRGWKFVRDAMNSP 632 (664)
T ss_pred CCCcccCCCHHHHHHHHhccHHHHHHHhcCc
Confidence 999999999999999 999999999999997
No 3
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=2.1e-83 Score=669.87 Aligned_cols=295 Identities=57% Similarity=0.941 Sum_probs=269.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCccc--ccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD--CLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~D--v~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
||+|+|||||||++|++|++||||+|+|||+|+|+++||+||+||+++| + |++||++|+++|+++||+++++++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~ 77 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence 6999999999999999999999999999999999999999999999999 7 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEeeCcceEEEEEcCCCCCc
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFS 523 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aalG~~g~vv~~hg~~~~~ 523 (679)
++|||||||++..++++.+.+.+++.++++++|+||+|+||+|+||+++.+|..++||+|++++||+||++||||..+..
T Consensus 78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGfdg~lvmrhg~~~~~ 157 (307)
T cd01486 78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGFDSYLVMRHGAGPQS 157 (307)
T ss_pred eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEeccceEEEEEeCCCccc
Confidence 99999999998777777888999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHHHHHHHHHHHhcC
Q 005745 524 ITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASALAVELFVGVLHH 603 (679)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~Pgv~~ias~~AvEll~~ll~~ 603 (679)
..+...+ ........++|||||+|+++|.||++||||||||||||||+++||+++|||||++|+||
T Consensus 158 ~~~~~~~--------------~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias~~avEl~~s~lqh 223 (307)
T cd01486 158 QSGSGDS--------------SSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIASSIAVELLVSLLQH 223 (307)
T ss_pred ccccccc--------------cccccCCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHHHHHHHHHHHHHcC
Confidence 1111000 00112345899999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccCCcccccc-ccchhHHHHHHhcCC
Q 005745 604 PKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACCSTVRSD-NSILFYFLNQVLNGV 678 (679)
Q Consensus 604 ~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aCs~~v~~~-~~~g~~fv~~~~n~~ 678 (679)
|++..||+..+.... .+.+++||.+||||||||++|+++++.+++|++|+|||++|+++ +++||+||++|||++
T Consensus 224 p~~~~a~~~~~~~~~-~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~v~~~y~~~g~~fv~~~~~~~ 298 (307)
T cd01486 224 PLGGHAPAESSSNEG-DEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDAVIDEYHREGWEFVLKAFNSP 298 (307)
T ss_pred CCccCCCCccccccC-CCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHHHHHHHHhccHHHHHHHHcCc
Confidence 999999997633221 23568999999999999999999999999999999999999999 999999999999997
No 4
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=398.39 Aligned_cols=242 Identities=26% Similarity=0.332 Sum_probs=214.2
Q ss_pred hhhhhhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCC
Q 005745 342 ADLNLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNG 418 (679)
Q Consensus 342 ~dlnlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~ 418 (679)
.|.-.||+||+++|++| |.+|++++|||||||||||+++.+|+++|||+|.|||+|.||.||++||.+|+++++
T Consensus 41 ~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~v--- 117 (427)
T KOG2017|consen 41 LDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARV--- 117 (427)
T ss_pred HHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhh---
Confidence 34468999999999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc
Q 005745 419 GDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT 498 (679)
Q Consensus 419 Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~ 498 (679)
|++||++|+..++++||.++|+.|.. ..+..++.++|++||+|.|||||..+||++++.|+..
T Consensus 118 g~~Ka~sA~~~lr~lNs~v~v~~y~~-----------------~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlL 180 (427)
T KOG2017|consen 118 GMHKAESAAAFLRRLNSHVEVQTYNE-----------------FLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLL 180 (427)
T ss_pred hhHHHHHHHHHHHhcCCCceeeechh-----------------hccchhHHHHhhccceEEEcCCCccchhhhhhHHHHc
Confidence 99999999999999999999999984 4578999999999999999999999999999999999
Q ss_pred CCeEEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccc
Q 005745 499 NKITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQ 577 (679)
Q Consensus 499 ~kp~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~ 577 (679)
|||+|++ +++++||+.++|. ...|||+|.++..|..... +.
T Consensus 181 gkpLVSgSaLr~EGQLtvYny---------------------------------~~GPCYRClFP~Ppp~~~v-----t~ 222 (427)
T KOG2017|consen 181 GKPLVSGSALRWEGQLTVYNY---------------------------------NNGPCYRCLFPNPPPPEAV-----TN 222 (427)
T ss_pred CCcccccccccccceeEEeec---------------------------------CCCceeeecCCCCcChHHh-----cc
Confidence 9999997 8999999999984 2579999997665542221 36
Q ss_pred cc---ccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCc
Q 005745 578 CT---VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCT 654 (679)
Q Consensus 578 Ct---V~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~ 654 (679)
|. |.+|.+++|+++||+|+||.+++-.+.. -|.+ ..+.|+-.+|+++++++++ .+|.
T Consensus 223 C~dgGVlGpv~GviG~mQALE~iKli~~~~~~~------------------s~~l-llfdg~~~~~r~irlR~r~-~~C~ 282 (427)
T KOG2017|consen 223 CADGGVLGPVTGVIGCMQALETIKLIAGIGESL------------------SGRL-LLFDGLSGHFRTIRLRSRR-PKCA 282 (427)
T ss_pred cccCceeecchhhhhHHHHHHHHHHHHccCccC------------------Ccce-EEEecccceeEEEEeccCC-CCCc
Confidence 65 9999999999999999999999865321 1221 2577888899999999877 9999
Q ss_pred cCCcccc
Q 005745 655 ACCSTVR 661 (679)
Q Consensus 655 aCs~~v~ 661 (679)
+||+.-.
T Consensus 283 ~Cg~n~t 289 (427)
T KOG2017|consen 283 VCGKNPT 289 (427)
T ss_pred ccCCCCc
Confidence 9998643
No 5
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=3.4e-41 Score=368.56 Aligned_cols=237 Identities=20% Similarity=0.160 Sum_probs=199.7
Q ss_pred hhhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc
Q 005745 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (679)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~ 421 (679)
..||+||+.+|++| |++|+++||+|||||||||++|++|+++|||+|+|||+|+|+.|||+||+||+.+|+ |++
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv---G~~ 92 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV---GKP 92 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC---CCc
Confidence 35899999998765 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005745 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (679)
Q Consensus 422 KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp 501 (679)
||++++++|+++||+++|+++...+ +.++..++++++|+||+|+|+.++|+++|++|.++++|
T Consensus 93 Ka~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 93 KIESAKNRILEINPYCQVDLYETRL-----------------SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeccc-----------------CHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998654 56677889999999999999999999999999999999
Q ss_pred EEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc-
Q 005745 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT- 579 (679)
Q Consensus 502 ~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~Ct- 579 (679)
+|.+ ..|+.||+.++. + +..+||+|.....|... .-+.|.
T Consensus 156 ~v~~~~~g~~g~~~v~~---~------------------------------~~~~c~~c~~~~~~~~~-----~~~~c~~ 197 (390)
T PRK07411 156 NVYGSIFRFEGQATVFN---Y------------------------------EGGPNYRDLYPEPPPPG-----MVPSCAE 197 (390)
T ss_pred EEEEEEccCEEEEEEEC---C------------------------------CCCCChHHhcCCCCCcc-----cCCCCcc
Confidence 9997 689999998764 1 24689999954322211 113465
Q ss_pred --ccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccCC
Q 005745 580 --VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (679)
Q Consensus 580 --V~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aCs 657 (679)
|.+|.+++||++||.|+|+.|++.+.. ..|.+ ..+.++-..|+.+.+. +.+.|.+|.
T Consensus 198 ~gvlg~~~~~~g~~~a~eaik~l~g~~~~------------------l~~~l-~~~d~~~~~~~~~~~~--~~~~c~~i~ 256 (390)
T PRK07411 198 GGVLGILPGIIGVIQATETIKIILGAGNT------------------LSGRL-LLYNALDMKFRELKLR--PNPERPVIE 256 (390)
T ss_pred CCcCcchHHHHHHHHHHHHHHHHcCCCCC------------------CCCeE-EEEECCCCceeEEecc--CCCCCCccc
Confidence 999999999999999999999975331 23332 3556666677777775 457899876
Q ss_pred ccc
Q 005745 658 STV 660 (679)
Q Consensus 658 ~~v 660 (679)
..+
T Consensus 257 ~~~ 259 (390)
T PRK07411 257 KLI 259 (390)
T ss_pred ccc
Confidence 543
No 6
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=5e-41 Score=345.21 Aligned_cols=234 Identities=25% Similarity=0.336 Sum_probs=193.7
Q ss_pred hhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
.||.||++++++| |++|+++||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+|+ |++|
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~K 79 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQPK 79 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCcH
Confidence 5899999998764 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
|++++++|+++||+++++++...+ +.+++.++++++|+||+|+|+.++|+++|++|+++++|+
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~ 142 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKL-----------------DDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPL 142 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999988644 556788899999999999999999999999999999999
Q ss_pred EEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccccc
Q 005745 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVT 581 (679)
Q Consensus 503 I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~ 581 (679)
|.+ +.|+.|++.++.. ++..+||+|.....|..... ...-.|.
T Consensus 143 v~~~~~g~~G~v~~~~~--------------------------------~~~~~c~~C~~~~~~~~~~~----~~~~gv~ 186 (240)
T TIGR02355 143 VSGAAIRMEGQVSVFTY--------------------------------QDGEPCYRCLSRLFGENALS----CVEAGVM 186 (240)
T ss_pred EEEEecccEeEEEEEec--------------------------------CCCCCccccccccCCCCCCC----ccccCcc
Confidence 997 5899999865421 12468999985544432110 0122489
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccC
Q 005745 582 RPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTAC 656 (679)
Q Consensus 582 ~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aC 656 (679)
+|.++++|+++|.|+++.|++.+.. ..|.+ ..++..-..|+.+.+ .+.++|++|
T Consensus 187 ~p~~~~~~~~~a~e~ik~l~g~~~~------------------l~g~l-l~~d~~~~~~~~~~~--~~~~~C~~C 240 (240)
T TIGR02355 187 APVVGVVGSLQAMEAIKVLAGIGKP------------------LSGKI-LMIDAMTMSFREMKL--PKNPTCPVC 240 (240)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCC------------------CCCeE-EEEECCCCEEEEEec--cCCccCCCC
Confidence 9999999999999999999975321 12221 245544445554444 678999999
No 7
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=358.52 Aligned_cols=238 Identities=22% Similarity=0.274 Sum_probs=198.8
Q ss_pred hhhhhhhhcCCch---hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc
Q 005745 345 NLKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (679)
Q Consensus 345 nlry~R~rllp~~---gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~ 421 (679)
..||+||++++.+ +|++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.|||+||+||+++|+ ..|++
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~ 80 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKP 80 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCcc
Confidence 4589999987655 4999999999999999999999999999999999999999999999999999999998 22589
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005745 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (679)
Q Consensus 422 KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp 501 (679)
||++++++|+++||+++++++..++ +.++++++++++|+||+|+|+.++|+++|++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~-----------------~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip 143 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDV-----------------TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIP 143 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999997644 45678889999999999999999999999999999999
Q ss_pred EEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005745 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (679)
Q Consensus 502 ~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~C-- 578 (679)
+|.+ ..|+.|++.+.. ++++|||+|.....|... ..|
T Consensus 144 ~i~~~~~g~~G~~~~~~---------------------------------P~~tpC~~Cl~~~~p~~~-------~~c~~ 183 (338)
T PRK12475 144 WIYGGCVGSYGVTYTII---------------------------------PGKTPCLRCLMEHVPVGG-------ATCDT 183 (338)
T ss_pred EEEEEecccEEEEEEEC---------------------------------CCCCCCHHHhcCCCCCCC-------CCCcc
Confidence 9997 589999876543 246799999954333211 124
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccCC
Q 005745 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (679)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aCs 657 (679)
.|.+|.++++|+.+|.|+||.|++.++. ..|.+ ..++.+-.+|+.+.+...+.++|++|+
T Consensus 184 ~Gvl~p~v~~iaslqa~EalK~L~g~~~~------------------l~~~L-l~~D~~~~~~~~~~~~~~k~p~Cp~Cg 244 (338)
T PRK12475 184 AGIIQPAVQIVVAYQVTEALKILVEDFEA------------------LRETF-LSFDIWNNQNMSIKVNKQKKDTCPSCG 244 (338)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCCCC------------------CcCeE-EEEECCCCeEEEEEeccCCCCCCCcCC
Confidence 4889999999999999999999875432 12221 245556666778888655689999999
Q ss_pred cc
Q 005745 658 ST 659 (679)
Q Consensus 658 ~~ 659 (679)
..
T Consensus 245 ~~ 246 (338)
T PRK12475 245 LT 246 (338)
T ss_pred CC
Confidence 74
No 8
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.9e-40 Score=356.50 Aligned_cols=238 Identities=26% Similarity=0.325 Sum_probs=202.1
Q ss_pred hhhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc
Q 005745 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (679)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~ 421 (679)
+.||+||+++|.+| |++|+++||+||||||+||++|++|+++|||+|+|||.|.|+.+||+||++|+++|+ ..|++
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di-g~g~~ 80 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV-KNNLP 80 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh-cCCCc
Confidence 56999999887665 899999999999999999999999999999999999999999999999999999999 11459
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005745 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (679)
Q Consensus 422 KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp 501 (679)
|+++++++|+++||.++++++..++ +.+++.++++++|+||+|+||.++|+++|++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~v~~~~~~~-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP 143 (339)
T PRK07688 81 KAVAAKKRLEEINSDVRVEAIVQDV-----------------TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIP 143 (339)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999987544 56788889999999999999999999999999999999
Q ss_pred EEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005745 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (679)
Q Consensus 502 ~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~C-- 578 (679)
+|.+ ..|+.|++.++. | ++.+||+|.....|.+. +.|
T Consensus 144 ~i~~~~~g~~G~~~~~~---p------------------------------~~~pC~~Cl~~~~~~~~-------~~c~~ 183 (339)
T PRK07688 144 WIYGACVGSYGLSYTII---P------------------------------GKTPCLRCLLQSIPLGG-------ATCDT 183 (339)
T ss_pred EEEEeeeeeeeEEEEEC---C------------------------------CCCCCeEeecCCCCCCC-------CCCcc
Confidence 9997 579999876553 2 35799999865444321 245
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccCC
Q 005745 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (679)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aCs 657 (679)
.|.+|.++++|+++|.|+|+.|++.+. ...|.+ ..+.++-..|+.+.+...+.++|++|+
T Consensus 184 ~gv~~p~~~~i~~~~a~ealk~l~g~~~------------------~l~~~l-~~~d~~~~~~~~~~~~~~~~~~Cp~Cg 244 (339)
T PRK07688 184 AGIISPAVQIVASYQVTEALKLLVGDYE------------------ALRDGL-VSFDVWKNEYSCMNVQKLKKDNCPSCG 244 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCC------------------CCCCeE-EEEECCCCeEEEEEecCCCCCCCCCCC
Confidence 489999999999999999999997632 123332 356667777888888777789999999
Q ss_pred cc
Q 005745 658 ST 659 (679)
Q Consensus 658 ~~ 659 (679)
..
T Consensus 245 ~~ 246 (339)
T PRK07688 245 EK 246 (339)
T ss_pred CC
Confidence 74
No 9
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=7.9e-40 Score=337.25 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=177.4
Q ss_pred hhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
.||+||+.+|.+| |++|+++||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||++|+++|+ |++|
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~K 87 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI---GQPK 87 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC---CChH
Confidence 6899999877664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
|++++++|+++||+++++++...+ +.++..++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 88 a~~a~~~l~~lnp~v~i~~~~~~i-----------------~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~ 150 (245)
T PRK05690 88 VESARAALARINPHIAIETINARL-----------------DDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPL 150 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999998654 456778899999999999999999999999999999999
Q ss_pred EEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccccc
Q 005745 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVT 581 (679)
Q Consensus 503 I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~ 581 (679)
|++ ..|+.|++.++. | +...+||+|.....|.+.. .+ ..-.|.
T Consensus 151 v~~~~~g~~G~v~~~~---~-----------------------------~~~~~c~~c~~~~~~~~~~-~~---~~~gv~ 194 (245)
T PRK05690 151 VSGAAIRMEGQVTVFT---Y-----------------------------QDDEPCYRCLSRLFGENAL-TC---VEAGVM 194 (245)
T ss_pred EEeeeccCCceEEEEe---c-----------------------------CCCCceeeeccCCCCCCCC-Cc---ccCCcc
Confidence 997 579999987654 1 1236999999654443221 00 122389
Q ss_pred CcchHHHHHHHHHHHHHHHhcCC
Q 005745 582 RPGLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 582 ~Pgv~~ias~~AvEll~~ll~~~ 604 (679)
+|.++++|+.+|.|+++.|++.+
T Consensus 195 ~~~~~~~~~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 195 APLVGVIGSLQAMEAIKLLTGYG 217 (245)
T ss_pred chHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999753
No 10
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.1e-40 Score=343.55 Aligned_cols=234 Identities=18% Similarity=0.116 Sum_probs=194.9
Q ss_pred hhhhhhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc
Q 005745 343 DLNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (679)
Q Consensus 343 dlnlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~ 421 (679)
+-+.||.||+.+ ...+|++|++++|+|||||||||++|++|+++|||+|+|+|+|.|+.||++||++|+.+|+ |++
T Consensus 5 ~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~ 81 (287)
T PRK08223 5 DYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRP 81 (287)
T ss_pred cHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCc
Confidence 446789999744 5567999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHhcC
Q 005745 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTN 499 (679)
Q Consensus 422 KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~lin~~~~~~~ 499 (679)
||++++++|+++||.++|+++...+ +.+++.++++++|+||||+|++ ++|+++|++|++++
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l-----------------~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~ 144 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGI-----------------GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG 144 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccc-----------------CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999998654 5678899999999999999986 89999999999999
Q ss_pred CeEEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcc------c
Q 005745 500 KITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTAN------R 572 (679)
Q Consensus 500 kp~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~d------r 572 (679)
+|+|++ ..|+.|++.+++ | ..+||+|...+.|..+..+ .
T Consensus 145 iP~V~~~~~g~~gqv~v~~---p-------------------------------~~p~~~~~f~~~~~~~~~~~~~~~~~ 190 (287)
T PRK08223 145 IPALTAAPLGMGTALLVFD---P-------------------------------GGMSFDDYFDLSDGMNEVEKAVRFLA 190 (287)
T ss_pred CCEEEEeccCCeEEEEEEc---C-------------------------------CCCchhhhcCCCCCCCchhhhcccCC
Confidence 999997 589999998774 2 2589999866532221111 1
Q ss_pred ccccccc---cc----------------CcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhh
Q 005745 573 TLDQQCT---VT----------------RPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQI 633 (679)
Q Consensus 573 tLdq~Ct---V~----------------~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~i 633 (679)
.+-+.|. |. +|.+++||++||.|++|.|++..+... .|.+ +++
T Consensus 191 ~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~-----------------~~~~-~~~ 252 (287)
T PRK08223 191 GLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYA-----------------APWF-HQF 252 (287)
T ss_pred cCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCC-----------------CCeE-EEE
Confidence 1234674 66 788889999999999999997643211 1222 477
Q ss_pred hccccccceeEeccC
Q 005745 634 RGSLSQFSQMTLVGH 648 (679)
Q Consensus 634 rg~l~~f~~~~~~~~ 648 (679)
.++-.+|+..++.+-
T Consensus 253 d~~~~~~~~~~~~~g 267 (287)
T PRK08223 253 DAYRSRYVRTWRPGG 267 (287)
T ss_pred EcCCceEEEEEecCC
Confidence 888888988888754
No 11
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1e-39 Score=352.96 Aligned_cols=230 Identities=23% Similarity=0.240 Sum_probs=192.6
Q ss_pred hhhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc
Q 005745 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (679)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~ 421 (679)
..||+||+.+|++| |++|++++|+|+||||+||++|++|+++|||+|+|||+|.|+.|||+||+||+++|+ |++
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~ 82 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV---GQP 82 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC---CCh
Confidence 36899999887775 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005745 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (679)
Q Consensus 422 KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp 501 (679)
||++++++|+++||+++++++...+ +.++..++++++|+||+|+|+.++|+++|++|+++++|
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRL-----------------TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998654 56778889999999999999999999999999999999
Q ss_pred EEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005745 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (679)
Q Consensus 502 ~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~C-- 578 (679)
+|.+ ..|+.|++.++. | +..+||+|.....|.. .+ ...|
T Consensus 146 ~v~~~~~g~~g~v~~~~---~------------------------------~~~~~~~~~~~~~~~~--~~---~~~c~~ 187 (355)
T PRK05597 146 HVWASILGFDAQLSVFH---A------------------------------GHGPIYEDLFPTPPPP--GS---VPSCSQ 187 (355)
T ss_pred EEEEEEecCeEEEEEEc---C------------------------------CCCCCHHHhCCCCCCc--cC---CCCccc
Confidence 9997 589999998764 1 2458999995332211 01 1245
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCC
Q 005745 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSC 653 (679)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C 653 (679)
+|.+|.++++|++||.|+++.|++.+.. ..|.+ ..+.+.-.+|+.+.+. +.++|
T Consensus 188 ~gv~g~~~~~~g~~~a~e~ik~l~g~~~~------------------l~~~l-~~~d~~~~~~~~~~~~--~~~~~ 242 (355)
T PRK05597 188 AGVLGPVVGVVGSAMAMEALKLITGVGTP------------------LIGKL-GYYDSLDGTWEYIPVV--GNPAV 242 (355)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhCCCCc------------------CcCeE-EEEECCCCeEEEEecc--CCCCC
Confidence 4999999999999999999999975321 12332 3556666667766664 34556
No 12
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=6.5e-39 Score=350.89 Aligned_cols=205 Identities=22% Similarity=0.193 Sum_probs=178.9
Q ss_pred hhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
.||+||+.+|++| |++|++++|+|||||||||++|++|+++|||+|+|||+|.|+.+||+||++|+.+|+ |++|
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~K 97 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV---GRSK 97 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC---CChH
Confidence 5899999887665 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
|++++++|+++||+++++.+..+| +.++..++++++|+||+|+|+.++|+++|++|+++++|+
T Consensus 98 a~~a~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 98 AQSARDSIVEINPLVNVRLHEFRL-----------------DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccC-----------------ChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999988654 556778899999999999999999999999999999999
Q ss_pred EEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005745 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (679)
Q Consensus 503 I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~Ct-- 579 (679)
|.+ ..|+.|++.++....| ++.++||+|.+...|... .-+.|.
T Consensus 161 v~~~~~g~~G~v~~~~~~~~-----------------------------~~~~~c~~c~~~~~~~~~-----~~~~~~~~ 206 (392)
T PRK07878 161 VWGSIYRFEGQASVFWEDAP-----------------------------DGLGLNYRDLYPEPPPPG-----MVPSCAEG 206 (392)
T ss_pred EEEEeccCEEEEEEEecCCC-----------------------------CCCCCeeeeecCCCCCcc-----CCCCCccC
Confidence 997 6899999986641111 135689999964322211 113454
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCC
Q 005745 580 -VTRPGLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 580 -V~~Pgv~~ias~~AvEll~~ll~~~ 604 (679)
|.+|.++++|++||.|+|+.|++.+
T Consensus 207 gv~g~~~~~~g~~~a~e~ik~l~g~~ 232 (392)
T PRK07878 207 GVLGVLCASIGSIMGTEAIKLITGIG 232 (392)
T ss_pred CccchHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999754
No 13
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=7.5e-39 Score=347.68 Aligned_cols=240 Identities=20% Similarity=0.223 Sum_probs=199.5
Q ss_pred hhhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc
Q 005745 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (679)
Q Consensus 345 nlry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~ 421 (679)
..||.||+.+|++| |++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|++|||+||++|+.+|+ |++
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di---G~~ 95 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV---GRP 95 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC---CCH
Confidence 36899999998775 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005745 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (679)
Q Consensus 422 KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp 501 (679)
||++++++|+++||+++++++...+ +.+++.++++++|+||+|+|+.++|+++|++|.++++|
T Consensus 96 Ka~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 96 KVEVAAERLKEIQPDIRVNALRERL-----------------TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred HHHHHHHHHHHHCCCCeeEEeeeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998654 56788899999999999999999999999999999999
Q ss_pred EEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc--
Q 005745 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (679)
Q Consensus 502 ~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~C-- 578 (679)
+|.+ ..|+.||+.++... + ..+.+||+|.....|. .+ .-+.|
T Consensus 159 ~v~~~~~g~~G~v~v~~~~-~-----------------------------~~~~~~~~~l~~~~~~---~~--~~~~c~~ 203 (370)
T PRK05600 159 LVWGTVLRFHGELAVFNSG-P-----------------------------DHRGVGLRDLFPEQPS---GD--SIPDCAT 203 (370)
T ss_pred EEEEEEecCEEEEEEEecC-C-----------------------------CCCCCCcHhhCCCCCc---cc--cCCCCcc
Confidence 9997 58999999876410 0 1136899999533221 11 11356
Q ss_pred -cccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccCC
Q 005745 579 -TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACC 657 (679)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aCs 657 (679)
.|.+|.+++||+++|.|+++.|++.+.. ..|.+ ..+.++-..|+.+.+ ++.+.|++|.
T Consensus 204 ~gvlg~~~~~ig~~~a~eaik~l~g~g~~------------------l~g~l-l~~d~~~~~~~~~~~--~~~~~c~~~~ 262 (370)
T PRK05600 204 AGVLGATTAVIGALMATEAIKFLTGIGDV------------------QPGTV-LSYDALTATTRSFRV--GADPARPLVT 262 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhCCCCC------------------CcCcE-EEEECCCCEEEEEEe--cCCCCCCccc
Confidence 4899999999999999999999975321 12322 255566666665555 4568899998
Q ss_pred ccc
Q 005745 658 STV 660 (679)
Q Consensus 658 ~~v 660 (679)
...
T Consensus 263 ~~~ 265 (370)
T PRK05600 263 RLR 265 (370)
T ss_pred ccc
Confidence 653
No 14
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=1.9e-38 Score=318.03 Aligned_cols=198 Identities=26% Similarity=0.337 Sum_probs=171.5
Q ss_pred hhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHH
Q 005745 347 KLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (679)
Q Consensus 347 ry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KA 423 (679)
||+||+.++.+| |++|++++|+|+|+||+|+++|++|+++||++|+++|+|.|+++|++||+||+++|+ |++||
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka 77 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV 77 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence 799999875554 899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I 503 (679)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERV-----------------TAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcC-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987654 4567788999999999999999999999999999999999
Q ss_pred EE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccC
Q 005745 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (679)
Q Consensus 504 ~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~ 582 (679)
.+ ..|+.|++.+.. | .++++||.|.....+.. .......++.+
T Consensus 141 ~~~~~g~~G~~~~~~---p-----------------------------~~~~~c~~c~~~~~~~~----~~~~~~~~~~~ 184 (202)
T TIGR02356 141 SAAVVGFGGQLMVFD---P-----------------------------GGEGPCLRCLFPDIADT----GPSCATAGVIG 184 (202)
T ss_pred EEEeccCeEEEEEEe---C-----------------------------CCCCCChhhcCCCCccc----CCCCccCCccc
Confidence 97 589999998653 1 12579999984331110 00011334899
Q ss_pred cchHHHHHHHHHHHHHHH
Q 005745 583 PGLAPIASALAVELFVGV 600 (679)
Q Consensus 583 Pgv~~ias~~AvEll~~l 600 (679)
|.++++|+++|.|++|.|
T Consensus 185 ~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 185 PVVGVIGSLQALEALKLL 202 (202)
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 999999999999999975
No 15
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-38 Score=320.39 Aligned_cols=199 Identities=22% Similarity=0.159 Sum_probs=174.7
Q ss_pred hhhhhhhcCCc-hhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCC-cHH
Q 005745 346 LKLMRWRQLPS-LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKA 423 (679)
Q Consensus 346 lry~R~rllp~-~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk-~KA 423 (679)
.||.||+.+.+ -+|++|++++|+|+||||+||++|++|+++|||+|+|+|+|.|+.+|++||++|+.+|+ |+ +|+
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~~k~ 84 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL---GKNPKP 84 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---CchHHH
Confidence 58999986644 45999999999999999999999999999999999999999999999999999999999 99 699
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I 503 (679)
++++++|+++||+++++++...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRL-----------------SEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987543 4566788999999999999999999999999999999999
Q ss_pred EE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccC
Q 005745 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (679)
Q Consensus 504 ~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~ 582 (679)
++ ..|+.|++.+.. +++++||+|.. |..... ...+.+.+
T Consensus 148 ~g~~~g~~G~v~~~~---------------------------------p~~~~c~~~~~---~~~~~~----~~~~~~~~ 187 (231)
T PRK08328 148 HGAVEGTYGQVTTIV---------------------------------PGKTKRLREIF---PKVKKK----KGKFPILG 187 (231)
T ss_pred EEeeccCEEEEEEEC---------------------------------CCCCCCHHHhC---CCCCCc----cccCCcCc
Confidence 97 589999997542 23568999994 332111 13567999
Q ss_pred cchHHHHHHHHHHHHHHHhcCC
Q 005745 583 PGLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 583 Pgv~~ias~~AvEll~~ll~~~ 604 (679)
|.++++|+.+|.|+++.|++.+
T Consensus 188 ~~~~ii~~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 188 ATAGVIGSIQAMEVIKLITGYG 209 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999764
No 16
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2e-37 Score=337.45 Aligned_cols=239 Identities=25% Similarity=0.303 Sum_probs=197.3
Q ss_pred hhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
.||.||+.++++| |++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||++|+++|+ |++|
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di---G~~K 190 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV---GQPK 190 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC---CCcH
Confidence 5799998876664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
|++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|+++|++|+++++|+
T Consensus 191 a~~~~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~ 253 (376)
T PRK08762 191 VDSAAQRLAALNPDVQVEAVQERV-----------------TSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253 (376)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------ChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987544 456778899999999999999999999999999999999
Q ss_pred EEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005745 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (679)
Q Consensus 503 I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~Ct-- 579 (679)
|++ ..|+.|++.++.... .++..+||+|.....|.. ..-+.|.
T Consensus 254 i~~~~~g~~g~v~~~~p~~-----------------------------~~~~~~c~~c~~~~~~~~-----~~~~~~~~~ 299 (376)
T PRK08762 254 VYGAVFRFEGQVSVFDAGR-----------------------------QRGQAPCYRCLFPEPPPP-----ELAPSCAEA 299 (376)
T ss_pred EEEEeccCEEEEEEEeCCC-----------------------------CCCCCCCHhhcCCCCCCc-----ccCCCCccC
Confidence 998 579999998764110 124579999984322211 1113454
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccceeEeccCCCCCCccCCc
Q 005745 580 -VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQMTLVGHSSNSCTACCS 658 (679)
Q Consensus 580 -V~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~~~~~~~~~~~C~aCs~ 658 (679)
|.+|.++++|+++|.|+++.|++.+.. ..|.+ ..+.+.-.+|+.+.+ .+.+.|+.|+.
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~------------------~~~~~-~~~d~~~~~~~~~~~--~~~~~C~~C~~ 358 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLLGIGDP------------------LTGRL-LTFDALAMRFRELRL--PPDPHCPVCAP 358 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCCC------------------CCCeE-EEEECCCCeEEEEec--cCCCCCCCCCC
Confidence 899999999999999999999985432 12322 245555556666665 57899999987
Q ss_pred c
Q 005745 659 T 659 (679)
Q Consensus 659 ~ 659 (679)
.
T Consensus 359 ~ 359 (376)
T PRK08762 359 G 359 (376)
T ss_pred C
Confidence 4
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.3e-37 Score=317.07 Aligned_cols=199 Identities=31% Similarity=0.399 Sum_probs=175.3
Q ss_pred hhhhhhcCCch---hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHH
Q 005745 347 KLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (679)
Q Consensus 347 ry~R~rllp~~---gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KA 423 (679)
||+||+.++.+ +|++|+++||+|+||||+||++|++|+++||++|+|+|+|.|+++|++||++|+.+|+ |++||
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka 77 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA 77 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence 79999977444 4899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I 503 (679)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i-----------------~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i 140 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERL-----------------DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLV 140 (228)
T ss_pred HHHHHHHHHhCCCCEEEEeccee-----------------CHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987644 4577888999999999999999999999999999999999
Q ss_pred EE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccc---c
Q 005745 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC---T 579 (679)
Q Consensus 504 ~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~C---t 579 (679)
++ ..|+.|++.+.. | +.++||.|.....+... +..| .
T Consensus 141 ~~g~~g~~g~v~~~~---p------------------------------~~~~c~~c~~~~~~~~~------~~~~~~~~ 181 (228)
T cd00757 141 SGAVLGFEGQVTVFI---P------------------------------GEGPCYRCLFPEPPPPG------VPSCAEAG 181 (228)
T ss_pred EEEeccCEEEEEEEC---C------------------------------CCCCCccccCCCCCCCC------CCccccCC
Confidence 97 478999987543 2 35799999865443321 1223 3
Q ss_pred ccCcchHHHHHHHHHHHHHHHhcCC
Q 005745 580 VTRPGLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 580 V~~Pgv~~ias~~AvEll~~ll~~~ 604 (679)
+++|.++++|+++|.|+++.|++.+
T Consensus 182 ~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 182 VLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999875
No 18
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=7.1e-36 Score=308.63 Aligned_cols=203 Identities=29% Similarity=0.388 Sum_probs=182.2
Q ss_pred hhhhhhhcCCchh---HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 346 lry~R~rllp~~g---q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
.||+||+.+++++ |++|+++||+|+|+||+||+++++|+++|||+++|+|.|+|+.+||+||++|+.+|+ |++|
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di---g~~K 85 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV---GKPK 85 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc---CCcH
Confidence 6899999998776 999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
++++++.|+++||.++++++...+ +.+++.++++++|+|++|+||.++|+++|++|+.+++|+
T Consensus 86 a~~a~~~l~~ln~~v~v~~~~~~l-----------------~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pl 148 (254)
T COG0476 86 AEVAAKALRKLNPLVEVVAYLERL-----------------DEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPL 148 (254)
T ss_pred HHHHHHHHHHhCCCCeEEEeeccc-----------------ChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCe
Confidence 999999999999999999998644 677788999999999999999999999999999999999
Q ss_pred EEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCcccccccccc--
Q 005745 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (679)
Q Consensus 503 I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~Ct-- 579 (679)
+++ +.|++|++.++.. ....+||.|.....|..... ...|.
T Consensus 149 i~~~~~~~~g~~~~~~~--------------------------------~~~~~c~~~~~~~~~~~~~~----~~~c~~~ 192 (254)
T COG0476 149 VHGGAIGFEGQVTVIIP--------------------------------GDKTPCYRCLFPEKPPPGLV----PTSCDEA 192 (254)
T ss_pred EeeeeccceEEEEEEec--------------------------------CCCCCcccccCCCCCCcccc----ccccccC
Confidence 997 6899999988752 11479999996665542221 11354
Q ss_pred -ccCcchHHHHHHHHHHHHHHHhcCC
Q 005745 580 -VTRPGLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 580 -V~~Pgv~~ias~~AvEll~~ll~~~ 604 (679)
|.+|.++.+++.+|.|+++.+++.+
T Consensus 193 gv~~~~~~~~~~~~~~~~~k~~~g~~ 218 (254)
T COG0476 193 GVLGPLVGVVGSLQALEAIKLLTGIG 218 (254)
T ss_pred CccccccchhhhHHHHHHHHHhcCCC
Confidence 9999999999999999999999876
No 19
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=7e-34 Score=303.14 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=177.8
Q ss_pred hhhhhhhcCCch-----hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCC
Q 005745 346 LKLMRWRQLPSL-----NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (679)
Q Consensus 346 lry~R~rllp~~-----gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk 420 (679)
.||.||+++|++ +|++|++++|+ |||||+.+|.+|++ |||+|+|||+|.|+.|||+ .||+++|+ |+
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di---G~ 123 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI---LK 123 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc---Cc
Confidence 699999998763 49999999999 99999999999999 9999999999999999999 99999999 99
Q ss_pred cHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHH--HHHHHHhc
Q 005745 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWL--PTLLCANT 498 (679)
Q Consensus 421 ~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~l--in~~~~~~ 498 (679)
+|+++|+++|.++||.++++.+ .++++++|+|++|+|+.++|++ +|++|.++
T Consensus 124 ~K~~~a~~~L~~lnp~v~i~~~--------------------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~ 177 (318)
T TIGR03603 124 KDIRDLTSNLDALELTKNVDEL--------------------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKET 177 (318)
T ss_pred HHHHHHHHHHHHhCCCCEEeeH--------------------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHH
Confidence 9999999999999999998753 3578999999999999999987 99999999
Q ss_pred CCeEEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCC---------CC--
Q 005745 499 NKITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVA---------PT-- 566 (679)
Q Consensus 499 ~kp~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~a---------P~-- 566 (679)
++|+|.+ ..|+.||+..+. | +++|||+|..... +.
T Consensus 178 ~~PlV~gav~g~~Gqv~~~~---P------------------------------~~t~C~~Cl~~r~~~~~~~~~~~~~~ 224 (318)
T TIGR03603 178 KKPNTIAFIDGPFVFITCTL---P------------------------------PETGCFECLERRLLSRLDWRLYGVFT 224 (318)
T ss_pred CCCEEEEEEccCEEEEEEEe---C------------------------------CCCCcHHHccchhhcccccccccccc
Confidence 9999987 579999987553 2 2469999994411 11
Q ss_pred -CCCccccccccc---cccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCcchhhhccccccce
Q 005745 567 -DSTANRTLDQQC---TVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGILPHQIRGSLSQFSQ 642 (679)
Q Consensus 567 -~s~~drtLdq~C---tV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ph~irg~l~~f~~ 642 (679)
...+. .+.| +|.+|.++++|+++|.|++ .+++.+.. ...|.+ ..|.+.-..|+.
T Consensus 225 ~~~~~~---~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~-----------------~l~g~l-l~id~~t~~~~~ 282 (318)
T TIGR03603 225 EYLVKA---ENNVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTS-----------------KFEGRL-LSINLPTLEIQF 282 (318)
T ss_pred cccCCC---CCCCccCCeehhHHHHHHHHHHHHHH-HHhCCCCc-----------------ccCCeE-EEEECCCCeEEE
Confidence 00110 1234 3789999999999999999 77765321 112432 133433344444
Q ss_pred eEeccCCCCCCccCCccc
Q 005745 643 MTLVGHSSNSCTACCSTV 660 (679)
Q Consensus 643 ~~~~~~~~~~C~aCs~~v 660 (679)
.. -.+.++|++|+..-
T Consensus 283 ~~--l~k~p~Cp~CG~~~ 298 (318)
T TIGR03603 283 QD--ILKQSCCSTCGTFN 298 (318)
T ss_pred Ee--cCCCCCCcccCCcc
Confidence 44 46779999998754
No 20
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.1e-33 Score=279.58 Aligned_cols=175 Identities=22% Similarity=0.241 Sum_probs=157.4
Q ss_pred hhhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHH
Q 005745 346 LKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (679)
Q Consensus 346 lry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAe 424 (679)
.+|+||+.+ ...+|++|+++||+|+|+||+||+++++|+++||++|+++|+|.|+.+|++||++|+.+|+ |++|++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~ 78 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAE 78 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHH
Confidence 379999755 4557999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005745 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 425 aaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~ 504 (679)
+++++|+++||+++++.+...+ + +...++++++|+||+|+|+.++|..++++|+++++|+|.
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~-----------------~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDI-----------------S-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCc-----------------c-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999987544 2 345678899999999999999999999999999999999
Q ss_pred E-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCc
Q 005745 505 A-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRP 583 (679)
Q Consensus 505 a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~P 583 (679)
+ ..|+.|+++.. . .+|
T Consensus 141 ~~~~G~~G~v~~d-------------------------------------~--------------------------~~p 157 (197)
T cd01492 141 TGVHGLFGFVFAD-------------------------------------L--------------------------LAP 157 (197)
T ss_pred EEecCCEEEEEEe-------------------------------------c--------------------------ccc
Confidence 7 57888876521 0 679
Q ss_pred chHHHHHHHHHHHHHHHhcCC
Q 005745 584 GLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 584 gv~~ias~~AvEll~~ll~~~ 604 (679)
.++++|+.+|.|+++.|++.+
T Consensus 158 ~~~~~~~~~~~e~~k~~~~~~ 178 (197)
T cd01492 158 VAAVVGGILAQDVINALSKRE 178 (197)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999753
No 21
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=8.6e-33 Score=276.54 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=156.5
Q ss_pred hhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCc--ccccCCCCcHH
Q 005745 347 KLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL--DDCLNGGDFKA 423 (679)
Q Consensus 347 ry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~--~Dv~~~Gk~KA 423 (679)
||+||+.+ +..+|++|+++||+|+|+||+||++|++|+++||++|+++|+|.|+.+|++||++|+. +|+ |++||
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka 77 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA 77 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence 68999765 4456999999999999999999999999999999999999999999999999999998 889 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I 503 (679)
++++++|+++||+++++.+...+ ....++..++++++|+||+|+|+.+.|..++++|+++++|+|
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~---------------~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i 142 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDS---------------LSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFI 142 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEeccc---------------ccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987543 112456778899999999999999999999999999999999
Q ss_pred EE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccC
Q 005745 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (679)
Q Consensus 504 ~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~ 582 (679)
.+ ..|+.|+++.. .
T Consensus 143 ~~~~~G~~G~v~~~-------------------------------------~---------------------------- 157 (198)
T cd01485 143 SCATYGLIGYAFFD-------------------------------------F---------------------------- 157 (198)
T ss_pred EEEeecCEEEEEEc-------------------------------------h----------------------------
Confidence 97 57998887520 0
Q ss_pred cchHHHHHHHHHHHHHHHhcCC
Q 005745 583 PGLAPIASALAVELFVGVLHHP 604 (679)
Q Consensus 583 Pgv~~ias~~AvEll~~ll~~~ 604 (679)
|.++++|+.+|.|+|+.|++.+
T Consensus 158 p~~~~~~~~~~~e~~k~l~~~~ 179 (198)
T cd01485 158 PIAAFLGGVVAQEAIKSISGKF 179 (198)
T ss_pred hHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999998753
No 22
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=1.5e-32 Score=277.56 Aligned_cols=190 Identities=22% Similarity=0.182 Sum_probs=158.6
Q ss_pred CCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhh
Q 005745 354 LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI 433 (679)
Q Consensus 354 lp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~i 433 (679)
+...+|++|++++|+|+||||+||++|++|+++||++|+|+|.|.|+.+|++||+++ .+|+ |++|+++++++|+++
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka~~a~~~l~~l 93 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKVEALKENLLEI 93 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHHHHHHHHHHHH
Confidence 344569999999999999999999999999999999999999999999999999865 7899 999999999999999
Q ss_pred CCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc-CCeEEEE-eeCcce
Q 005745 434 FPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDS 511 (679)
Q Consensus 434 nP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~-~kp~I~a-alG~~g 511 (679)
||+++++.+...+ +.+++.++++++|+||+|+|+.++|..+++.|.++ ++|+|.+ +.+..|
T Consensus 94 np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 94 NPFVEIEAHNEKI-----------------DEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred CCCCEEEEEeeec-----------------CHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 9999999998654 45677889999999999999999999999999999 9999987 566666
Q ss_pred EEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHH
Q 005745 512 FLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASA 591 (679)
Q Consensus 512 ~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~Pgv~~ias~ 591 (679)
++...+.. .....||.|.+... . ..+...|.+|.++++|++
T Consensus 157 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~----~----~~~~~gv~~~~~~~i~~~ 197 (212)
T PRK08644 157 DSNSIKTR-------------------------------RIGKNFYIVGDFVT----E----AKPGNPLMAPRVNIAAAH 197 (212)
T ss_pred CceEEEec-------------------------------CCCCCeeECCCCCc----c----cCCCCCccchHHHHHHHH
Confidence 55433210 01235776643211 0 013456899999999999
Q ss_pred HHHHHHHHHhcC
Q 005745 592 LAVELFVGVLHH 603 (679)
Q Consensus 592 ~AvEll~~ll~~ 603 (679)
||.|+|+.|+++
T Consensus 198 ~a~ealk~l~~~ 209 (212)
T PRK08644 198 QANLVLRLILGE 209 (212)
T ss_pred HHHHHHHHHhCC
Confidence 999999999975
No 23
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.98 E-value=2.4e-31 Score=279.75 Aligned_cols=130 Identities=26% Similarity=0.306 Sum_probs=119.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
||+|||||||||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++..+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999866
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc--------CCeEEEE-eeCcceEEEEE
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--------NKITITA-ALGFDSFLVMR 516 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~--------~kp~I~a-alG~~g~vv~~ 516 (679)
| . +...++++++|+||+|+|+.++|.++|+.|... ++|+|++ ..|+.|++.+.
T Consensus 78 i-----------------~-~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi 139 (291)
T cd01488 78 I-----------------Q-DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVI 139 (291)
T ss_pred c-----------------C-chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEE
Confidence 5 1 123678999999999999999999999988664 4999997 58999998654
No 24
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.97 E-value=1.6e-30 Score=266.23 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=148.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
||+|+|+||+||+++++|+++|||+|+++|.|.|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++..+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEEEcCCCCCcc
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRHGPGPFSI 524 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~~hg~~~~~~ 524 (679)
| + ...+...++++++|+||+|+||.++|+++|++|+.+++|+|++ ..|+.|++.+..
T Consensus 78 i-------~--------~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~------- 135 (234)
T cd01484 78 V-------G--------PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVIL------- 135 (234)
T ss_pred C-------C--------hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEc-------
Confidence 5 0 0122235789999999999999999999999999999999997 589999987543
Q ss_pred cccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccc-cCcchHHHHHHHHHHHHH
Q 005745 525 THDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVELFV 598 (679)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV-~~Pgv~~ias~~AvEll~ 598 (679)
++.++||.|.. .|... + .+.||+ ..|....-+...|.+++.
T Consensus 136 --------------------------p~~t~c~~C~~--~~~~~----~-~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 136 --------------------------PGMTECIECTL--YPPQK----N-FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred --------------------------CCCCCCcccCC--CCCCC----C-CCccccCCCCCCchHHHHHHHHHHh
Confidence 23578999984 22111 1 257885 558877777778877765
No 25
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=301.81 Aligned_cols=226 Identities=15% Similarity=0.038 Sum_probs=176.8
Q ss_pred hhhhhhhhhhhhhhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcc
Q 005745 335 TRLAISAADLNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLD 413 (679)
Q Consensus 335 ~~la~~~~dlnlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~ 413 (679)
..+.....=.+.+|.||+.+ ...+|++|+++||+|+||||+||++|++|+++|||+|+|+|+|.|+.||||||++|+.+
T Consensus 302 ~~~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 302 LKLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HhHHHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChh
Confidence 33444334446789999754 44469999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHH
Q 005745 414 DCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLP 491 (679)
Q Consensus 414 Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~li 491 (679)
|+ |++||++++++|++|||+++|+.+...| +.+++.++++++|+||||+|+. +.|..+
T Consensus 382 dI---G~~Kaevaa~~l~~INP~v~I~~~~~~I-----------------~~en~~~fl~~~DiVVDa~D~~~~~~rr~l 441 (989)
T PRK14852 382 SF---GRGKLDVMTERALSVNPFLDIRSFPEGV-----------------AAETIDAFLKDVDLLVDGIDFFALDIRRRL 441 (989)
T ss_pred hC---CChHHHHHHHHHHHHCCCCeEEEEecCC-----------------CHHHHHHHhhCCCEEEECCCCccHHHHHHH
Confidence 99 9999999999999999999999998654 6788999999999999999985 456667
Q ss_pred HHHHHhcCCeEEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCC-
Q 005745 492 TLLCANTNKITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDST- 569 (679)
Q Consensus 492 n~~~~~~~kp~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~- 569 (679)
+..|+++++|+|++ ..|+.|++.++. | +..||.|..-.-|..+.
T Consensus 442 ~~~c~~~~IP~I~ag~~G~~g~v~v~~---p-------------------------------~~~~~~~~f~~~~~~p~~ 487 (989)
T PRK14852 442 FNRALELGIPVITAGPLGYSCALLVFM---P-------------------------------GGMNFDSYFGIDDDTPPM 487 (989)
T ss_pred HHHHHHcCCCEEEeeccccCeeEEEEc---C-------------------------------CCCCHHHhCCCCCCCchH
Confidence 77899999999997 589999998764 1 12444444222221110
Q ss_pred ----------cc-----ccccc--------cccccCcchHHHHHHHHHHHHHHHhcCCCccCCCcccc
Q 005745 570 ----------AN-----RTLDQ--------QCTVTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFA 614 (679)
Q Consensus 570 ----------~d-----rtLdq--------~CtV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~ 614 (679)
.+ +-+|. .-.-+...+.+-|++.|.|+++.+|+++.-..||....
T Consensus 488 ~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~q 555 (989)
T PRK14852 488 EGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFRQ 555 (989)
T ss_pred hhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchhc
Confidence 00 00111 11124445667788999999999999987777776543
No 26
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.97 E-value=6.2e-30 Score=256.45 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=148.2
Q ss_pred hhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCC
Q 005745 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436 (679)
Q Consensus 357 ~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~ 436 (679)
..|++|++++|+|+|+||+||++|.+|+++||++|+|+|.|.|+.+||+||. |..+|+ |++|+++++++|+++||.
T Consensus 14 ~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~i---G~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 14 KIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQV---GEPKTEALKENISEINPY 89 (200)
T ss_pred HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhC---CCHHHHHHHHHHHHHCCC
Confidence 4599999999999999999999999999999999999999999999999996 567899 999999999999999999
Q ss_pred cEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHH-HHHhcCC-eEEEEeeCcceEEE
Q 005745 437 VAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTL-LCANTNK-ITITAALGFDSFLV 514 (679)
Q Consensus 437 v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~-~~~~~~k-p~I~aalG~~g~vv 514 (679)
++++++...+ +.+++.++++++|+||+|+|+.++|.++.. ++..++. +++. +.|+.|+..
T Consensus 90 ~~i~~~~~~i-----------------~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 90 TEIEAYDEKI-----------------TEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGLAGYDD 151 (200)
T ss_pred CEEEEeeeeC-----------------CHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-EeccccCCC
Confidence 9999988654 567888999999999999999999987655 4555544 4455 566666552
Q ss_pred --EEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHHH
Q 005745 515 --MRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASAL 592 (679)
Q Consensus 515 --~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~Pgv~~ias~~ 592 (679)
.+. + ......||.|.|...+. .....|.+|.|+++|++|
T Consensus 152 ~~~~~---~----------------------------~~~~~~~~~~~~~~~~~--------~~~~g~~~p~v~~~a~~q 192 (200)
T TIGR02354 152 ANSIK---T----------------------------RKISKHFYLCGDGKSDA--------KQGLGLMAPRVQICAAHQ 192 (200)
T ss_pred CceEE---e----------------------------cccCCCEEEcCCCCCcc--------cCCCCCchhHHHHHHHHH
Confidence 111 0 01135799996532110 023358999999999999
Q ss_pred HHHHHHHH
Q 005745 593 AVELFVGV 600 (679)
Q Consensus 593 AvEll~~l 600 (679)
|.|+|+.+
T Consensus 193 a~~~l~~~ 200 (200)
T TIGR02354 193 ANLVLELI 200 (200)
T ss_pred HHHHHHhC
Confidence 99999864
No 27
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=6.6e-30 Score=250.89 Aligned_cols=172 Identities=25% Similarity=0.247 Sum_probs=144.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
||+|+||||+||+++++|+++||++|+|+|.|.|+.+|++||++ ..+|+ |++|+++++++|+++||+++++++...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQI---GEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 69999999999999999999999999999999999999999995 57899 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc-CCeEEEE-eeCcceEEEEEcCCCCCc
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDSFLVMRHGPGPFS 523 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~-~kp~I~a-alG~~g~vv~~hg~~~~~ 523 (679)
+ +.+++.++++++|+||+|+|+.++|+.+++.|.++ ++|+|.+ +.|+.|++..+...
T Consensus 77 ~-----------------~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~---- 135 (174)
T cd01487 77 I-----------------DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTK---- 135 (174)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEec----
Confidence 4 45678889999999999999999999777777766 9999986 67888887654310
Q ss_pred ccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccccCcchHHHHHHHHHHHH
Q 005745 524 ITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASALAVELF 597 (679)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV~~Pgv~~ias~~AvEll 597 (679)
....+||.|.+.. |. . .....|.+|.++++|++||.|+|
T Consensus 136 ---------------------------~~~~~~~~~~~~~-~~-~------~~~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 136 ---------------------------KISDNFYICGDLV-NE-A------KEGLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred ---------------------------CCCCCeEEeecCC-CC-C------CCCcCccccHHHHHHHHHHHhhC
Confidence 0124799998422 11 1 12446899999999999999985
No 28
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=290.99 Aligned_cols=218 Identities=17% Similarity=0.080 Sum_probs=174.0
Q ss_pred hhhhhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 344 LNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 344 lnlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
...+|.||+.+ ..-+|++|+++||+|+|+||+||++|.+|+++|||+|+|+|+|.|++||||||++|+.+|+ |++|
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G~~K 98 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---GRPK 98 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---CCHH
Confidence 35789999855 3446999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHhcCC
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNK 500 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~esR~lin~~~~~~~k 500 (679)
+++++++|++|||+++|+.+...| +.+++.++++++|+||||+|+ .+.|.+++..|.++++
T Consensus 99 v~v~~~~l~~inP~~~I~~~~~~i-----------------~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~i 161 (679)
T PRK14851 99 LAVMKEQALSINPFLEITPFPAGI-----------------NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGI 161 (679)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCC-----------------ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999998655 567889999999999999997 5789999999999999
Q ss_pred eEEEE-eeCcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccC--------------CC
Q 005745 501 ITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVV--------------AP 565 (679)
Q Consensus 501 p~I~a-alG~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~--------------aP 565 (679)
|+|++ ..|+.|++.++...+ ....|||+.+.- +|
T Consensus 162 P~i~~g~~G~~g~~~~~~p~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~p 210 (679)
T PRK14851 162 PVITAGPLGYSSAMLVFTPQG-------------------------------MGFDDYFNIGGKMPEEQKYLRFAMGLAP 210 (679)
T ss_pred CEEEeecccccceEEEEcCCC-------------------------------CCHhHhccCCCCCChHHHHHHHHhcCCC
Confidence 99997 589999998764111 123455555332 11
Q ss_pred CC----CCcccc--ccc-cccccCcchHHHHHHHHHHHHHHHhcCCCccCCCcc
Q 005745 566 TD----STANRT--LDQ-QCTVTRPGLAPIASALAVELFVGVLHHPKGIYAGAE 612 (679)
Q Consensus 566 ~~----s~~drt--Ldq-~CtV~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~ 612 (679)
.. .+.... |.. .-.-+...+-..+++.+.|+++.|+++..-..+|..
T Consensus 211 ~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 264 (679)
T PRK14851 211 RPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLRPVPCY 264 (679)
T ss_pred cchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeeeccchh
Confidence 10 000000 111 111244456667888999999999998776666654
No 29
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=292.67 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=134.0
Q ss_pred hhhhhhhhc-CCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCC-CEEEEEeCCccCccCCCcCccCCcccccCCCCcH
Q 005745 345 NLKLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (679)
Q Consensus 345 nlry~R~rl-lp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GV-g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K 422 (679)
..||.|++. +...+|++|++++|+|+|+| +||.+|.+|+++|| |+|+|||+|.||.|||||| +|+..|+ |++|
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di---G~~K 161 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL---GVNK 161 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc---ccHH
Confidence 578999984 45667999999999999997 99999999999996 9999999999999999998 6899999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 423 Aeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
|++++++|++|||+++|+++...| +.++++++++++|+||||+||.++|+++|+.|.+++||+
T Consensus 162 v~~a~~~l~~inp~i~v~~~~~~i-----------------~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 162 AVVAARRIAELDPYLPVEVFTDGL-----------------TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999755 678999999999999999999999999999999999999
Q ss_pred EEEeeCcceEE
Q 005745 503 ITAALGFDSFL 513 (679)
Q Consensus 503 I~aalG~~g~v 513 (679)
|.++ |-.|++
T Consensus 225 i~~~-~~~g~~ 234 (722)
T PRK07877 225 LMAT-SDRGLL 234 (722)
T ss_pred EEEc-CCCCCc
Confidence 9975 222555
No 30
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=6.1e-29 Score=233.32 Aligned_cols=133 Identities=36% Similarity=0.478 Sum_probs=122.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
|++||+|+|+|++||++|++|+++||++|+|+|+|.|+++|++||++|+.+|+ |++|+++++++|+++||+++++.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence 57899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEE
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~ 515 (679)
...+ +.++..++++++|+||+|+|+.+.|..++++|+++++|+|++ ..|+.|+++|
T Consensus 78 ~~~~-----------------~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 78 PEKI-----------------DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp ESHC-----------------SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eccc-----------------ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 8654 567888999999999999999999999999999999999997 5799999976
No 31
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=3e-29 Score=299.65 Aligned_cols=237 Identities=19% Similarity=0.214 Sum_probs=186.1
Q ss_pred ccccceEe--c-CCcccce----EecccCCCChh-hhh-hhhhhhhhhhhhhhcCC-chhHHhhcCCeEEEEcCChHHHH
Q 005745 309 PNTVGWEL--N-KGRKVPR----CISLAKSMDPT-RLA-ISAADLNLKLMRWRQLP-SLNLDILSSRKCLLLGAGTLGCQ 378 (679)
Q Consensus 309 ~~~~gwe~--~-~Gkl~p~----~~dl~~~~dp~-~la-~~~~dlnlry~R~rllp-~~gq~kL~~~kVlIvGaGgLGs~ 378 (679)
.+++|+|. . +||+.|. .+|-.+.+... .+. +.....|.||+||+.+. .-+|++|+++||+|||||||||+
T Consensus 354 GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e 433 (1008)
T TIGR01408 354 GGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCE 433 (1008)
T ss_pred chHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHH
Confidence 35667875 3 8999997 35533333211 111 12234689999998654 44699999999999999999999
Q ss_pred HHHHHHHcCC-----CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCC
Q 005745 379 VARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPV 453 (679)
Q Consensus 379 VA~~La~~GV-----g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~ 453 (679)
++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++..+|
T Consensus 434 ~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v------- 503 (1008)
T TIGR01408 434 MLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI---GKPKSYTAADATLKINPQIKIDAHQNRV------- 503 (1008)
T ss_pred HHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---CcHHHHHHHHHHHHHCCCCEEEEEEeec-------
Confidence 9999999999 899999999999999999999999999 9999999999999999999999998765
Q ss_pred CCccccccccChhhH--HHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEEEcCCCCCcccccccc
Q 005745 454 PCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRHGPGPFSITHDVKT 530 (679)
Q Consensus 454 ~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~~hg~~~~~~~~~~~~ 530 (679)
+ ...+++ .++++++|+||+|+||.++|.+++++|+.+++|+|.+ ..|+.|++.+.-
T Consensus 504 ~--------~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~i------------- 562 (1008)
T TIGR01408 504 G--------PETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVV------------- 562 (1008)
T ss_pred C--------hhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEe-------------
Confidence 0 111222 5788999999999999999999999999999999997 589999987643
Q ss_pred hhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccc-cCcchHHHHHHHHHHHHHHHhcC
Q 005745 531 EAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVELFVGVLHH 603 (679)
Q Consensus 531 ~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV-~~Pgv~~ias~~AvEll~~ll~~ 603 (679)
++.+.||.|.. -.|..+ .+.||+ ..|-.-..+...|.+++..++..
T Consensus 563 --------------------p~~te~y~~~~-d~~~~~------~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~ 609 (1008)
T TIGR01408 563 --------------------PHLTESYGSSR-DPPEKE------IPFCTLKSFPAAIEHTIQWARDKFEGLFSH 609 (1008)
T ss_pred --------------------CCCcCCCCCCC-CCCCCC------CCcccccCCCCCchHHHHHHHHHHHHHHHh
Confidence 13467999872 122211 247885 45776677777888887776643
No 32
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.96 E-value=2.8e-29 Score=263.60 Aligned_cols=146 Identities=23% Similarity=0.260 Sum_probs=134.3
Q ss_pred hhhhhcCCc-hhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHH
Q 005745 348 LMRWRQLPS-LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAA 426 (679)
Q Consensus 348 y~R~rllp~-~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaa 426 (679)
|+||+.+.+ .+|++|++++|+|+|+||||+++|++|+++||++|+|+|+|.|+.+||+||++++++|+ |++||+++
T Consensus 2 YsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea~ 78 (286)
T cd01491 2 YSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEAS 78 (286)
T ss_pred cccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHHH
Confidence 889976544 45999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-
Q 005745 427 VKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA- 505 (679)
Q Consensus 427 ae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a- 505 (679)
+++|+++||+++++.+...+ ..++++++|+||+|.|+.+.|..+|++|+++++|+|.+
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~---------------------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPL---------------------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHCCCCEEEEEeccC---------------------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 99999999999999987421 23578899999999999999999999999999999997
Q ss_pred eeCcceEEEEEc
Q 005745 506 ALGFDSFLVMRH 517 (679)
Q Consensus 506 alG~~g~vv~~h 517 (679)
..|+.|+++...
T Consensus 138 ~~G~~G~vf~df 149 (286)
T cd01491 138 TRGLFGSIFCDF 149 (286)
T ss_pred ccccEEEEEecC
Confidence 689999998754
No 33
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=4.8e-29 Score=264.78 Aligned_cols=133 Identities=24% Similarity=0.345 Sum_probs=122.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
||+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+||+||+.+|+ |++||++|+++|+++||+++++++..+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999866
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEEEc
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~~h 517 (679)
| .+.....++++++|+||+|.|+.++|+.+|++|+.+++|+|++ ..|+.|++.+..
T Consensus 78 i----------------~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~ 134 (312)
T cd01489 78 I----------------KDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIK 134 (312)
T ss_pred C----------------CCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEc
Confidence 5 1113345789999999999999999999999999999999997 589999998664
No 34
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.95 E-value=1e-27 Score=263.70 Aligned_cols=181 Identities=22% Similarity=0.288 Sum_probs=149.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC-----CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-----g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
||+||||||+||+++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++++++||+++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence 69999999999999999999999 999999999999999999999999999 9999999999999999999999
Q ss_pred EEecccCCCCCCCCCccccccccChh-hHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEEEcC
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCR-RLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRHG 518 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~-~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~~hg 518 (679)
++..++ + ..+.+ -..++++++|+|++|+||.++|..+++.|+.+++|+|.+ ..|+.|++.+.-
T Consensus 78 a~~~~v-------~-------~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~i- 142 (435)
T cd01490 78 ALQNRV-------G-------PETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVI- 142 (435)
T ss_pred EEeccc-------C-------hhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEe-
Confidence 998765 0 00111 115788999999999999999999999999999999997 589999987653
Q ss_pred CCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccc-cCcchHHHHHHHHHHHH
Q 005745 519 PGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVELF 597 (679)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV-~~Pgv~~ias~~AvEll 597 (679)
| +.+.||.|... .|..+ .+.||+ ..|-.-..+...|.+++
T Consensus 143 --P------------------------------~~te~y~~~~~-p~~~~------~P~Ctl~~~P~~~eHcI~wA~~~F 183 (435)
T cd01490 143 --P------------------------------HLTESYSSSRD-PPEKS------IPLCTLKNFPNAIEHTIQWARDEF 183 (435)
T ss_pred --C------------------------------CCCCCccCCCC-CCCCC------CCCccccCCCCCchHHHHHHHHHH
Confidence 2 35789999832 12111 257885 45776677777777776
Q ss_pred HHHhcC
Q 005745 598 VGVLHH 603 (679)
Q Consensus 598 ~~ll~~ 603 (679)
..+...
T Consensus 184 ~~lF~~ 189 (435)
T cd01490 184 EGLFKQ 189 (435)
T ss_pred HHHhcc
Confidence 666543
No 35
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-28 Score=263.51 Aligned_cols=186 Identities=22% Similarity=0.343 Sum_probs=160.8
Q ss_pred HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 005745 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~ 438 (679)
++++++.|||||||||+||++.++|++.|+++|+|||-|+|+.||||||+||+.++| |++||.+|++..++.||.++
T Consensus 7 ~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn~~ 83 (603)
T KOG2013|consen 7 HEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPNIK 83 (603)
T ss_pred HHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCCCc
Confidence 578899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEEEc
Q 005745 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (679)
Q Consensus 439 v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~~h 517 (679)
+.+|..+| .+.+...++++++|+|+.|.||+++|..+|++|.....|+|.. .-||.||+.+.-
T Consensus 84 l~~yhanI----------------~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii 147 (603)
T KOG2013|consen 84 LVPYHANI----------------KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVII 147 (603)
T ss_pred eEeccccc----------------cCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEe
Confidence 99999887 2345567889999999999999999999999999999999986 589999997642
Q ss_pred CCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccCCCCCCCccccccccccc-cCcchHHHHHHHHH-H
Q 005745 518 GPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAV-E 595 (679)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~aP~~s~~drtLdq~CtV-~~Pgv~~ias~~Av-E 595 (679)
.+.+-||.|..-..| +| ...||+ .+|.--+.+...|- -
T Consensus 148 ---------------------------------~GkTECyeC~pK~~~------kT-ypvCTIRstPS~~iHCIVWAK~~ 187 (603)
T KOG2013|consen 148 ---------------------------------KGKTECYECIPKPVP------KT-YPVCTIRSTPSEPIHCIVWAKHY 187 (603)
T ss_pred ---------------------------------cCCcceecccCCCCC------Cc-CCceEeecCCCCceeeeeehHhH
Confidence 246789999943332 33 468995 56776677777777 4
Q ss_pred HHHHHhcC
Q 005745 596 LFVGVLHH 603 (679)
Q Consensus 596 ll~~ll~~ 603 (679)
++..|++.
T Consensus 188 lF~qlF~~ 195 (603)
T KOG2013|consen 188 LFNQLFGE 195 (603)
T ss_pred HHHHHhcc
Confidence 55666654
No 36
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=1e-26 Score=219.99 Aligned_cols=132 Identities=31% Similarity=0.361 Sum_probs=122.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
||+|+|+||+||+++++|+++|+++|+++|+|.|+++|++||++++.+|+ |++|+++++++|+++||+++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcceEEEEEc
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g~vv~~h 517 (679)
+ +.++..++++++|+||+|+|+.+.|+.++++|+++++|+|++ ..|+.|++.+..
T Consensus 78 ~-----------------~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 78 I-----------------SEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 4 233447888999999999999999999999999999999997 578999987654
No 37
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.5e-27 Score=241.95 Aligned_cols=138 Identities=26% Similarity=0.336 Sum_probs=124.0
Q ss_pred hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCc
Q 005745 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV 437 (679)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v 437 (679)
+++-|.+.||||||||||||++.++|+..|++.|.+||.|+++.+|||||+||++.|+ |++||++||+.+.+..|+.
T Consensus 34 ~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 34 NLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred HHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhCCCc
Confidence 4677888999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc---C-------CeEEEE-e
Q 005745 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT---N-------KITITA-A 506 (679)
Q Consensus 438 ~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~---~-------kp~I~a-a 506 (679)
.|..+..+| .+.-.++.+++|+|+.+.|+.++|.++|.+..+. | +|+|++ .
T Consensus 111 ~v~~h~~kI------------------qd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGt 172 (422)
T KOG2015|consen 111 VVVPHRQKI------------------QDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGT 172 (422)
T ss_pred EEeeeecch------------------hcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCc
Confidence 999988766 3444678999999999999999999999876542 2 599997 5
Q ss_pred eCcceEEEEE
Q 005745 507 LGFDSFLVMR 516 (679)
Q Consensus 507 lG~~g~vv~~ 516 (679)
-||.|++-+.
T Consensus 173 EG~KG~arvI 182 (422)
T KOG2015|consen 173 EGFKGHARVI 182 (422)
T ss_pred ccccceeEEE
Confidence 7999998543
No 38
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=1.4e-26 Score=236.84 Aligned_cols=130 Identities=23% Similarity=0.259 Sum_probs=121.7
Q ss_pred chhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCC
Q 005745 356 SLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP 435 (679)
Q Consensus 356 ~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP 435 (679)
+.+|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+ |++|+++++++|+++||
T Consensus 3 ~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~inP 79 (231)
T cd00755 3 EEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDINP 79 (231)
T ss_pred HHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHHCC
Confidence 456999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 436 ~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
+++++.+...+ +.++..+++. ++|+||+|+|+.++|..++.+|+.+++|+|++
T Consensus 80 ~~~V~~~~~~i-----------------~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 80 ECEVDAVEEFL-----------------TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CcEEEEeeeec-----------------CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 99999998644 4567777774 69999999999999999999999999999986
No 39
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.94 E-value=2.2e-26 Score=239.87 Aligned_cols=141 Identities=19% Similarity=0.212 Sum_probs=129.0
Q ss_pred hhhhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHH
Q 005745 345 NLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (679)
Q Consensus 345 nlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KA 423 (679)
..||.|+.++ ...+|++|++++|+|+|+||+||++|++|+++|||+|+|+|.|.|+.+|++||+++..+|+ |++||
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v---G~~Kv 86 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV---GLAKA 86 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc---ChHHH
Confidence 3589999755 4556999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
+++++++.++||+++|+.+...+ +.++..+++. ++|+||+|+|+..+|..++++|+++++|+
T Consensus 87 e~~~~rl~~INP~~~V~~i~~~i-----------------~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~ 149 (268)
T PRK15116 87 EVMAERIRQINPECRVTVVDDFI-----------------TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPL 149 (268)
T ss_pred HHHHHHHHhHCCCcEEEEEeccc-----------------ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999986433 4567777774 79999999999999999999999999999
Q ss_pred EEE
Q 005745 503 ITA 505 (679)
Q Consensus 503 I~a 505 (679)
|.+
T Consensus 150 I~~ 152 (268)
T PRK15116 150 VTT 152 (268)
T ss_pred EEE
Confidence 986
No 40
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.93 E-value=8.3e-26 Score=249.18 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=139.8
Q ss_pred hhhhhhh-cCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHH
Q 005745 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (679)
Q Consensus 346 lry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAe 424 (679)
.||+||+ +++..||++|.+++|+|||+||+||+++++|++.|||+|||+|+|.|+.+|++||++++.+|+ |++||+
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~ 77 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAE 77 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHH
Confidence 3899995 555567999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005745 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 425 aaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~ 504 (679)
++++.|+++||+|+++.+..++ ..-.++..++++++|+||.+.++...+..++.+|+.+++|+|.
T Consensus 78 ~~~~~L~eLNp~V~i~~~~e~~---------------~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~ 142 (425)
T cd01493 78 ATCELLQELNPDVNGSAVEESP---------------EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLY 142 (425)
T ss_pred HHHHHHHHHCCCCEEEEEeccc---------------chhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999987543 1112345688999999999999999999999999999999999
Q ss_pred E-eeCcceEEEEEcC
Q 005745 505 A-ALGFDSFLVMRHG 518 (679)
Q Consensus 505 a-alG~~g~vv~~hg 518 (679)
+ +.|+.|++.+..+
T Consensus 143 ~~s~G~~G~v~v~~~ 157 (425)
T cd01493 143 VRSYGLYGYIRIQLK 157 (425)
T ss_pred EecccCEEEEEEEEC
Confidence 7 7999999987765
No 41
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=229.33 Aligned_cols=216 Identities=21% Similarity=0.321 Sum_probs=175.4
Q ss_pred hhhhhhhhhhhhhhhhhcCCchh----HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCC
Q 005745 336 RLAISAADLNLKLMRWRQLPSLN----LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411 (679)
Q Consensus 336 ~la~~~~dlnlry~R~rllp~~g----q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~ 411 (679)
++..+.+|-| .|+|-+.+..+| .+||+.+.|+|||.||+||-+|..|.|+|+|++.|+|+|+|++.|+||- +|.
T Consensus 51 klSsEVVDSN-PYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~ 128 (422)
T KOG2336|consen 51 KLSSEVVDSN-PYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQ 128 (422)
T ss_pred HhhhhHhcCC-hHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccC
Confidence 3455667765 688877665554 5999999999999999999999999999999999999999999999996 578
Q ss_pred cccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-----------cCCEEEE
Q 005745 412 LDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-----------SHDVIFL 480 (679)
Q Consensus 412 ~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~-----------~~DvV~~ 480 (679)
.+.. |.+|+++|.+.|..|||+|.++.+..+| .+.++.+.+.+ ..|+|+.
T Consensus 129 P~Qa---GlsKv~AA~~TL~~iNPDV~iE~hn~NI----------------TTvenFd~F~~~is~g~~~~gkpvDLVLS 189 (422)
T KOG2336|consen 129 PDQA---GLSKVDAAVQTLAEINPDVVIEVHNYNI----------------TTVENFDTFTDRISNGSLCPGKPVDLVLS 189 (422)
T ss_pred cccc---cchHHHHHHHHHHhcCCCeEEEEeecce----------------eeehhHHHHHHHhhcCCCCCCCcceEEee
Confidence 8888 9999999999999999999999999888 23444444432 4899999
Q ss_pred eCCChHHHHHHHHHHHhcCCeEEEEee---CcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCce
Q 005745 481 LTDTRESRWLPTLLCANTNKITITAAL---GFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCY 557 (679)
Q Consensus 481 ~tDs~esR~lin~~~~~~~kp~I~aal---G~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY 557 (679)
|.||+|+|..+|.+|...+..++..++ ...|++.. |.+++++|+
T Consensus 190 CVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~---------------------------------i~PGetACF 236 (422)
T KOG2336|consen 190 CVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQL---------------------------------IVPGETACF 236 (422)
T ss_pred ehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEE---------------------------------ecCCcccee
Confidence 999999999999999999998876532 23344432 235689999
Q ss_pred eecccCCCCCCCcccccc--ccccccCcc-hHHHHHHHHHHHHHHHhcCCC
Q 005745 558 FCNDVVAPTDSTANRTLD--QQCTVTRPG-LAPIASALAVELFVGVLHHPK 605 (679)
Q Consensus 558 ~C~dv~aP~~s~~drtLd--q~CtV~~Pg-v~~ias~~AvEll~~ll~~~~ 605 (679)
.|..+..-......|||. ..|...-|. ++++|+.+....||.||..++
T Consensus 237 ACaPPlVVAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LLNFGe 287 (422)
T KOG2336|consen 237 ACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLLNFGE 287 (422)
T ss_pred cccCceeeecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHhhccc
Confidence 998443334445667874 589977774 889999999999999998754
No 42
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.92 E-value=1.3e-24 Score=223.58 Aligned_cols=199 Identities=17% Similarity=0.160 Sum_probs=149.9
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCC-----C-----EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHH
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-----R-----KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLE 431 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GV-----g-----~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~ 431 (679)
-+..||+||||||+||+++++|+++|+ | +|+++|+|+|+.+|++|| +|..+|+ |++||++++++++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dV---G~~Ka~v~~~ri~ 84 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV---GQNKAIVLVNRLN 84 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHC---CcHHHHHHHHHHH
Confidence 367899999999999999999999973 4 999999999999999999 6788999 9999999999999
Q ss_pred hhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHh---cCCeEEEEe-e
Q 005745 432 RIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN---TNKITITAA-L 507 (679)
Q Consensus 432 ~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~---~~kp~I~aa-l 507 (679)
+++ +++++++...+ +. .+++.++|+||+|+||.++|..+++.|.+ .++|+|+++ -
T Consensus 85 ~~~-~~~i~a~~~~~-----------------~~---~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~ 143 (244)
T TIGR03736 85 QAM-GTDWTAHPERV-----------------ER---SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNR 143 (244)
T ss_pred hcc-CceEEEEEeee-----------------Cc---hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCC
Confidence 998 89999998655 11 23356899999999999999999999988 348999985 5
Q ss_pred CcceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecccC-C-CCCCCcccccccccc------
Q 005745 508 GFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVV-A-PTDSTANRTLDQQCT------ 579 (679)
Q Consensus 508 G~~g~vv~~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~dv~-a-P~~s~~drtLdq~Ct------ 579 (679)
+..||+++-.-... ..+. ...+-+..+-||-|.--. . |.++. +.||
T Consensus 144 ~~~gqv~~g~i~~~--~k~~------------------~~~~lP~vte~y~~~~d~~~~~~~~~------PsCsla~al~ 197 (244)
T TIGR03736 144 ADDGQVILGQVPSR--AKGE------------------NRLRLPHVGELFPELIDPSVDPDDDR------PSCSLAEALA 197 (244)
T ss_pred CCCCcEEEEecccc--cccC------------------CceecCCchhhCcccccCccCCCCCC------CCchHHHHhc
Confidence 77899886541000 0000 001224456778775211 1 23332 3676
Q ss_pred ccCcchHHHHHHHHHHHHHHHhcCCCccCCCc
Q 005745 580 VTRPGLAPIASALAVELFVGVLHHPKGIYAGA 611 (679)
Q Consensus 580 V~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~ 611 (679)
-.+=.+..+++.+|..+|+.|+..+.-.+...
T Consensus 198 ~Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~ 229 (244)
T TIGR03736 198 KQSLFINQAIAVFAMNLLWKLFRKGRLEFHGV 229 (244)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCceeeeEE
Confidence 24456888899999999999998765444333
No 43
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.92 E-value=9.1e-25 Score=261.39 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=137.1
Q ss_pred hhhhhhhcCCch-hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHH
Q 005745 346 LKLMRWRQLPSL-NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (679)
Q Consensus 346 lry~R~rllp~~-gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAe 424 (679)
.+|+||+.+.+. +|++|++++|||+||||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|+ |++||+
T Consensus 5 ~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~Kae 81 (1008)
T TIGR01408 5 ALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRNRAE 81 (1008)
T ss_pred hhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---CchHHH
Confidence 479999866444 5999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcC--CeE
Q 005745 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN--KIT 502 (679)
Q Consensus 425 aaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~--kp~ 502 (679)
+++++|+++||.|+|+.+...+ + .++++++|+||+|.|+.+.|..+|++|+.++ +|+
T Consensus 82 a~~~~L~eLNp~V~V~~~~~~l-----------------~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~f 140 (1008)
T TIGR01408 82 AVVKKLAELNPYVHVSSSSVPF-----------------N----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAF 140 (1008)
T ss_pred HHHHHHHHHCCCceEEEecccC-----------------C----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999987433 2 3588999999999999999999999999999 899
Q ss_pred EEE-eeCcceEEEEEcC
Q 005745 503 ITA-ALGFDSFLVMRHG 518 (679)
Q Consensus 503 I~a-alG~~g~vv~~hg 518 (679)
|.+ ..|+.|+++...|
T Consensus 141 I~~~~~G~~G~vf~D~g 157 (1008)
T TIGR01408 141 ISADVRGLFGSLFCDFG 157 (1008)
T ss_pred EEEeecceEEEEEecCC
Confidence 997 6899999987654
No 44
>PRK06153 hypothetical protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=234.42 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=116.0
Q ss_pred HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCc-cCCcccccCCCC--cHHHHHHHHHHhhCC
Q 005745 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS-LYTLDDCLNGGD--FKAMAAVKSLERIFP 435 (679)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~-L~~~~Dv~~~Gk--~KAeaaae~L~~inP 435 (679)
|++|++++|+||||||+||+++..|+++||++|+|||.|.|+.+||+||+ +|+.+|+ |+ +||+++++++.+++|
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999998 6789999 88 999999999999998
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEeeCc
Q 005745 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGF 509 (679)
Q Consensus 436 ~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aalG~ 509 (679)
++ +++...| +.+++. .+.++|+||+|+|+.++|.+++++|.++++|+|++++|.
T Consensus 248 ~I--~~~~~~I-----------------~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l 301 (393)
T PRK06153 248 GI--VPHPEYI-----------------DEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGL 301 (393)
T ss_pred eE--EEEeecC-----------------CHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecc
Confidence 54 4554333 455554 578999999999999999999999999999999998775
No 45
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.91 E-value=2.5e-24 Score=217.60 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=129.0
Q ss_pred hhhhhhhh-cCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHH
Q 005745 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (679)
Q Consensus 345 nlry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KA 423 (679)
+.||.|-. ++.+-++++|++++|+|+|+||+||.++..|+|.|||+|+|||.|.|+.+|+|||.-....++ |++|+
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i---Gk~Kv 86 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI---GKPKV 86 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---ccHHH
Confidence 45566654 445557899999999999999999999999999999999999999999999999998888999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeE
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~lin~~~~~~~kp~ 502 (679)
+++++++++|||.++|.++..-+ +.+++++++. ++|+||||.|+..++.-+-.+|..+++|+
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~-----------------t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~v 149 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFI-----------------TEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPV 149 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhh-----------------CHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCE
Confidence 99999999999999999998644 7889988875 59999999999999999999999999999
Q ss_pred EEE
Q 005745 503 ITA 505 (679)
Q Consensus 503 I~a 505 (679)
|+.
T Consensus 150 Iss 152 (263)
T COG1179 150 ISS 152 (263)
T ss_pred Eee
Confidence 985
No 46
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-23 Score=238.23 Aligned_cols=191 Identities=20% Similarity=0.242 Sum_probs=157.9
Q ss_pred ccccceEec---CCcccceE----ecccCCCCh--hhh-hhhhhhhhhhhhhhhcCCchh-HHhhcCCeEEEEcCChHHH
Q 005745 309 PNTVGWELN---KGRKVPRC----ISLAKSMDP--TRL-AISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGC 377 (679)
Q Consensus 309 ~~~~gwe~~---~Gkl~p~~----~dl~~~~dp--~~l-a~~~~dlnlry~R~rllp~~g-q~kL~~~kVlIvGaGgLGs 377 (679)
.+++++|.- .||+.|.. +|--+++.. ..+ .+.-...+.||+-|+.+-+.+ |+||.+.++.+||||++||
T Consensus 364 GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGC 443 (1013)
T KOG2012|consen 364 GGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGC 443 (1013)
T ss_pred hhhhHHHHHHhhccCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhH
Confidence 356677743 89999975 443333311 011 233446688999998774444 8999999999999999999
Q ss_pred HHHHHHHHcCC-----CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCC
Q 005745 378 QVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHP 452 (679)
Q Consensus 378 ~VA~~La~~GV-----g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~ 452 (679)
+..+|++.+|| |+|++.|.|.||.||||||+||+..|| |++|+++||++...+||+++|+++..++
T Consensus 444 E~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rv------ 514 (1013)
T KOG2012|consen 444 ELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRV------ 514 (1013)
T ss_pred HHHHhhhheeeccCCCCceEEeccchhhhccccceeecccccc---CchHHHHHHHHHHhcCCCceeeehhhcc------
Confidence 99999999999 589999999999999999999999999 9999999999999999999999999876
Q ss_pred CCCccccccccChhhH--HHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE-eeCcce--EEEEEc
Q 005745 453 VPCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDS--FLVMRH 517 (679)
Q Consensus 453 ~~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a-alG~~g--~vv~~h 517 (679)
. .+.+.+ ++++.+-|+|..+.||.++|.+++.-|..+.||++.+ .+|..| |+++-|
T Consensus 515 -g--------peTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPh 575 (1013)
T KOG2012|consen 515 -G--------PETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPH 575 (1013)
T ss_pred -C--------cccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecc
Confidence 1 122222 6789999999999999999999999999999999986 689887 556655
No 47
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.85 E-value=3.8e-21 Score=196.28 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=90.6
Q ss_pred hhhhhhhhcCC-chhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHH
Q 005745 345 NLKLMRWRQLP-SLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (679)
Q Consensus 345 nlry~R~rllp-~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KA 423 (679)
..||+||+.+. ..+|++|++++|+|+|+||||++++++|+++|||+|+|+|+|.|+.+||+||++++. |+ |++||
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---Gk~KA 81 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---GGTRG 81 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---CCcHH
Confidence 46899997654 446999999999999999999999999999999999999999999999999999986 67 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeccc
Q 005745 424 MAAVKSLERIFPAVAAEGVVMAI 446 (679)
Q Consensus 424 eaaae~L~~inP~v~v~~~~~~I 446 (679)
++++++|+++||+|+|+.+...+
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rl 104 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKL 104 (287)
T ss_pred HHHHHHHHHHCCCcEEEEccccc
Confidence 99999999999999999987544
No 48
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2e-20 Score=193.44 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=145.9
Q ss_pred ChhhhhhhhhhhhhhhhhhhcCCchh-HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCC
Q 005745 333 DPTRLAISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411 (679)
Q Consensus 333 dp~~la~~~~dlnlry~R~rllp~~g-q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~ 411 (679)
+-..++++...+ |+||+.+|+++ |++|+++||||+|.+|+|.+++++|+.+||++++++|+-.|....++-|+|+.
T Consensus 2 ~~~else~E~al---YDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~ 78 (331)
T KOG2014|consen 2 KGEELSEQEIAL---YDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLIS 78 (331)
T ss_pred chhhhhHHHHHH---HHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEc
Confidence 345566666665 99999888887 99999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHH
Q 005745 412 LDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLP 491 (679)
Q Consensus 412 ~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~li 491 (679)
.+++ |+.||++..++++.+||.|++.....++ .+..++++.++|+||..--+++.+-.+
T Consensus 79 ~~~v---g~~raeas~erl~~LNPmV~v~~d~edl------------------~ek~eeff~qFdlVV~~~~s~e~~~kv 137 (331)
T KOG2014|consen 79 ASSV---GQTRAEASLERLQDLNPMVDVSVDKEDL------------------SEKDEEFFTQFDLVVATDQSREEKCKV 137 (331)
T ss_pred hhhh---chHHHHHHHHHHHhcCCceEEEechhhh------------------hhcchhhhhceeEEEEeccchhhhhhH
Confidence 9999 9999999999999999999999887554 234478999999999999999999999
Q ss_pred HHHHHhcCCeEEEE-eeCcceEEEEEcC
Q 005745 492 TLLCANTNKITITA-ALGFDSFLVMRHG 518 (679)
Q Consensus 492 n~~~~~~~kp~I~a-alG~~g~vv~~hg 518 (679)
|.+|++++++++.+ ..|..||.+..-+
T Consensus 138 n~icrk~~i~F~a~d~~g~~Gy~F~dL~ 165 (331)
T KOG2014|consen 138 NEICRKLNIAFYAGDCFGLCGYAFADLQ 165 (331)
T ss_pred HHHHHhcCceEEeccccceeeeeeeehh
Confidence 99999999999987 5899999886544
No 49
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-19 Score=186.83 Aligned_cols=133 Identities=26% Similarity=0.322 Sum_probs=121.9
Q ss_pred cCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHh
Q 005745 353 QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER 432 (679)
Q Consensus 353 llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~ 432 (679)
.+++.|++||+++-|+||||||+||.|+..|+|.||++|.|||+|.|++|.||||...+..|+ |.||+.++++++++
T Consensus 63 FfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~clkkh~sk 139 (430)
T KOG2018|consen 63 FFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVMCLKKHFSK 139 (430)
T ss_pred hhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHHHHHHHHHh
Confidence 456667999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhh-ccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI-LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 433 inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li-~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
|.|.++|++..+-. +.++.++++ .+-|+|+||.||.+++.-+-.+|..+++++|++
T Consensus 140 iaPw~eIdar~~l~-----------------~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 140 IAPWCEIDARNMLW-----------------TSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS 196 (430)
T ss_pred hCccceecHHHhhc-----------------CCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec
Confidence 99999999987533 455555654 568999999999999999999999999999985
No 50
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.1e-17 Score=184.81 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=138.0
Q ss_pred hhhhhhhhhhhhcC-CchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCC
Q 005745 341 AADLNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419 (679)
Q Consensus 341 ~~dlnlry~R~rll-p~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~G 419 (679)
..|.++ |+||+-+ +..-++++.+++|||.|+||||-+||+||+.+||+++||.|...+..++|.-|++++++|| |
T Consensus 14 ~IDE~L-YSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---g 89 (1013)
T KOG2012|consen 14 EIDESL-YSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---G 89 (1013)
T ss_pred hhhhhh-hhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---C
Confidence 345433 9999854 4445899999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005745 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN 499 (679)
Q Consensus 420 k~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~ 499 (679)
+++|++..++|+++|+.|.|..+... ..+++++++++||.+--+.+...-++++|++++
T Consensus 90 knRA~as~~~LaeLN~yV~V~v~t~~---------------------~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~ 148 (1013)
T KOG2012|consen 90 KNRAEASVEKLAELNNYVPVVVLTGP---------------------LTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG 148 (1013)
T ss_pred CchHHHHHHHHHHhhcceeeEEecCc---------------------ccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC
Confidence 99999999999999999999988632 226789999999999999999999999999999
Q ss_pred CeEEEE-eeCcceEEEEEcCC
Q 005745 500 KITITA-ALGFDSFLVMRHGP 519 (679)
Q Consensus 500 kp~I~a-alG~~g~vv~~hg~ 519 (679)
+-+|.+ .-|..|+++...|.
T Consensus 149 i~fi~ad~RGLfg~lFCDFG~ 169 (1013)
T KOG2012|consen 149 IAFIAADTRGLFGQLFCDFGE 169 (1013)
T ss_pred eEEEEeccchhhhhhhccCCC
Confidence 999988 67988988777663
No 51
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.6e-17 Score=174.06 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=136.6
Q ss_pred hhhhhhh-cCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHH
Q 005745 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (679)
Q Consensus 346 lry~R~r-llp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAe 424 (679)
.||+||. ++.+.||..|..++|.++|||.+||+++++|+..|||.||+||...|+.+++..+++...+++ |++||+
T Consensus 8 ~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---GksrA~ 84 (523)
T KOG2016|consen 8 TKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GKSRAE 84 (523)
T ss_pred hHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---chhHHH
Confidence 5899996 777899999999999999999999999999999999999999999999999999999888888 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005745 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 425 aaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~ 504 (679)
+..+.|+++||+|+-+....+ ......+...+++++++|+.+-=+.++...+.++|+.+++|+++
T Consensus 85 a~~e~LqeLN~~V~~~~vee~---------------p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~ 149 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEES---------------PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLL 149 (523)
T ss_pred HHHHHHHHhChhhhcCccccC---------------hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEE
Confidence 999999999999998776532 23344556778999999998888888888999999999999999
Q ss_pred E-eeCcceEEEE
Q 005745 505 A-ALGFDSFLVM 515 (679)
Q Consensus 505 a-alG~~g~vv~ 515 (679)
. .+|+.|++.+
T Consensus 150 ~rs~Gl~G~iRI 161 (523)
T KOG2016|consen 150 TRSYGLAGTIRI 161 (523)
T ss_pred EeeecceEEEEE
Confidence 8 8999998854
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.63 E-value=5.6e-15 Score=166.83 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=129.9
Q ss_pred HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 005745 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~ 438 (679)
-++.+++||+|+|.|++|+.++..|++.|+++|..||.|.+ .+|++| + |+. ++.|++ .+|+++
T Consensus 124 F~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------I---gEl-~e~A~~----~n~~v~ 186 (637)
T TIGR03693 124 FELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------I---HEL-AEIAEE----TDDALL 186 (637)
T ss_pred hhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------H---HHH-HHHHHH----hCCCCc
Confidence 46779999999999999999999999999999999999999 999999 6 776 776666 899999
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHhcCCeEEEE-eeCcceEEEE
Q 005745 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (679)
Q Consensus 439 v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~esR~lin~~~~~~~kp~I~a-alG~~g~vv~ 515 (679)
++.+.. ...+.+.+.++++|+|+..+|+ .+.-..+|..|.+.|+|+|=+ ..|..+.+-.
T Consensus 187 v~~i~~------------------~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGP 248 (637)
T TIGR03693 187 VQEIDF------------------AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGP 248 (637)
T ss_pred eEeccC------------------CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecc
Confidence 998863 2467788999999999999994 444456999999999777754 3444443321
Q ss_pred EcCCCCCcccccccchhccCccccccccCCCCCCCCCCcCceeecc-cCC--CCCCCccccccccccccCcc-hHHHHHH
Q 005745 516 RHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCND-VVA--PTDSTANRTLDQQCTVTRPG-LAPIASA 591 (679)
Q Consensus 516 ~hg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gCY~C~d-v~a--P~~s~~drtLdq~CtV~~Pg-v~~ias~ 591 (679)
.. .+++.||+.|.- ... .-+. ++ .. ...+|. ++|+|.+
T Consensus 249 lf--------------------------------tPgkTGCWeCa~~RL~e~~L~~--~~---~s-~a~sPat~AmlAnv 290 (637)
T TIGR03693 249 VF--------------------------------QQHGDECFEAAWHRLHESALHE--EN---SL-AAFPLAGKAMLANI 290 (637)
T ss_pred eE--------------------------------CCCCCcHHHHHHHHHHHHhcCC--CC---cc-cccCHHHHHHHHHH
Confidence 11 134789999942 111 0000 11 11 345565 7888899
Q ss_pred HHHHHHHHHhcC
Q 005745 592 LAVELFVGVLHH 603 (679)
Q Consensus 592 ~AvEll~~ll~~ 603 (679)
++.|++|.+++.
T Consensus 291 iv~ElfK~ITg~ 302 (637)
T TIGR03693 291 IVFELFKAAADD 302 (637)
T ss_pred HHHHHHHHHhcc
Confidence 999999999973
No 53
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=98.63 E-value=1.2e-08 Score=89.18 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=46.8
Q ss_pred CcCceeecccCCCCCCCcccccccccc---ccCcchHHHHHHHHHHHHHHHhcCCCccCCCccccCCCCCCCCCCCCCCc
Q 005745 553 RLGCYFCNDVVAPTDSTANRTLDQQCT---VTRPGLAPIASALAVELFVGVLHHPKGIYAGAEFANSIDSGSSEQPLGIL 629 (679)
Q Consensus 553 ~~gCY~C~dv~aP~~s~~drtLdq~Ct---V~~Pgv~~ias~~AvEll~~ll~~~~~~~ap~~~~~~~~~~~~~~~lG~~ 629 (679)
+++||+|+....|. ..+.|. |++|.+++||+.||.|+|+.|++.... ..|.+
T Consensus 2 ~~pC~rCl~p~~~~-------~~~~C~~~GVlg~~~giigslqA~eaik~l~g~~~~------------------l~~~l 56 (84)
T PF05237_consen 2 KTPCYRCLFPEPPE-------SAPTCAEAGVLGPVVGIIGSLQANEAIKLLLGIGEP------------------LSGKL 56 (84)
T ss_dssp T---HHHHHTTSS---------TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S---------------------BTEE
T ss_pred CCceehhcCCCCCc-------cCCCccccccccchHHHHHHHHHHHHHHHHHhcCCc------------------hhhhe
Confidence 57999999443311 113564 999999999999999999999975321 22322
Q ss_pred chhhhccccccceeEeccCCCCCCccCCcc
Q 005745 630 PHQIRGSLSQFSQMTLVGHSSNSCTACCST 659 (679)
Q Consensus 630 ph~irg~l~~f~~~~~~~~~~~~C~aCs~~ 659 (679)
+.|+++-.+|+.+.+. +.++|++|+++
T Consensus 57 -~~~D~~~~~~~~i~~~--k~~~C~~C~~~ 83 (84)
T PF05237_consen 57 -LTIDLLNMSFRSIRIK--KNPDCPVCGPK 83 (84)
T ss_dssp -EEEETTTTEEEEEE------TT-TTT---
T ss_pred -eeEECCCCeEEEEecC--CCccCcCcCcC
Confidence 4677777778887776 78999999974
No 54
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.11 E-value=1.2e-05 Score=75.90 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=63.7
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..+++++|+|+|+||.|..++.+|...|+++|++++. -..|++.+++.+ +...+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~ 61 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNI 61 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Ccccc
Confidence 3689999999999999999999999999999999874 234777777776 45555
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHH
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~es 487 (679)
+... .+.+.+.+.++|+||.||.....
T Consensus 62 ~~~~---------------------~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 62 EAIP---------------------LEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEE---------------------GGGHCHHHHTESEEEE-SSTTST
T ss_pred ceee---------------------HHHHHHHHhhCCeEEEecCCCCc
Confidence 5554 34455778899999999998654
No 55
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.07 E-value=2.1e-05 Score=86.78 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=73.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~ 444 (679)
.+|+|||||++|+.||..|++-|.++|++.|.. +.|...+++... + ++++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs----------------------~~~~~~i~~~~~---~--~v~~~~v 54 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS----------------------KEKCARIAELIG---G--KVEALQV 54 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHHHHhhcc---c--cceeEEe
Confidence 589999999999999999999999999998871 223333322211 2 5555555
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEe
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aa 506 (679)
++ .+.+.+.++++++|+||+|....-.+ -+-++|.+.|+++++.+
T Consensus 55 D~----------------~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts 99 (389)
T COG1748 55 DA----------------ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTS 99 (389)
T ss_pred cc----------------cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence 44 46778889999999999999877666 45677888888887653
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.94 E-value=3.5e-05 Score=81.88 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=61.4
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
++.++|+|+|+||.|..++..|+..|+++|+++|.+ ..|++.+++.+.+.++.+.+..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------------------~~ka~~la~~l~~~~~~~~~~~ 182 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------------------PARAAALADELNARFPAARATA 182 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHHHhhCCCeEEEe
Confidence 467899999999999999999999999999999874 2488999999988777654422
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (679)
. +++.+.+.++|+||+||-
T Consensus 183 ~-----------------------~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 183 G-----------------------SDLAAALAAADGLVHATP 201 (284)
T ss_pred c-----------------------cchHhhhCCCCEEEECCc
Confidence 1 223345678999999974
No 57
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.55 E-value=0.00033 Score=76.99 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=68.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCC-EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 367 CLLLGAGTLGCQVARMLMAWGVR-KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg-~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
|+|+|+|.+|..+++.|++.+-- ++++.|. ...|++.+++.+ ...+++....+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------------------~~~~~~~~~~~~----~~~~~~~~~~d 54 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------------------NPEKAERLAEKL----LGDRVEAVQVD 54 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------------------SHHHHHHHHT------TTTTEEEEE--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------------------CHHHHHHHHhhc----cccceeEEEEe
Confidence 79999999999999999999854 9999887 233555555544 23455555544
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
+ .+.+.+.++++++|+||+|.... .-.-+-++|.+.++.+|+.
T Consensus 55 ~----------------~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 55 V----------------NDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp T----------------TTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred c----------------CCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 3 45677899999999999999877 5556788999999999984
No 58
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.52 E-value=0.00049 Score=73.24 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=60.5
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
+++++|+|+|+||+|..++..|+..|+.+|++++.+. + ...|++.+++.+.+..+.+.+..
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~--------------~-----~~~~a~~l~~~l~~~~~~~~~~~ 184 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD--------------D-----FYERAEQTAEKIKQEVPECIVNV 184 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------h-----HHHHHHHHHHHHhhcCCCceeEE
Confidence 5678999999999999999999999999999988621 0 12467777777776666555443
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (679)
... .+.+.+.+.++.+|+||++|-
T Consensus 185 ~d~------------------~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 185 YDL------------------NDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred ech------------------hhhhHHHhhhccCCEEEEeCC
Confidence 321 123344556677788887764
No 59
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.42 E-value=0.00068 Score=66.07 Aligned_cols=117 Identities=24% Similarity=0.242 Sum_probs=92.2
Q ss_pred CCeEEEEcCChHHHHHHHHHH---HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLM---AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La---~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.-.|.++|||-||--+|..|+ +-|..+|..+|+.+|+..++.---+ -..+ |.+|++-++ +|.+..+.-.++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~---GEyKv~Fi~-rl~~~~f~r~V~ 91 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKV---GEYKVDFIK-RLGRVHFGRRVE 91 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCc---chhHHHHHH-HhCcCCCCceee
Confidence 347999999999999999998 5689999999999999998754322 2345 999999754 677778899999
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe---CCChHHHHHHHHHHHhcCCeEEEE
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL---TDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~---tDs~esR~lin~~~~~~~kp~I~a 505 (679)
+.+..| +.+|+..+.. |+|+-| .|+...--.+-.+|++.|+.-|+.
T Consensus 92 a~pE~i-----------------t~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 92 AFPENI-----------------TKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred cccccc-----------------cccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 988765 5667665543 777665 467777777888999999988863
No 60
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.42 E-value=0.0006 Score=72.55 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=43.6
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~ 436 (679)
+++++|+|+|+||.|..++..|+..|+.+|+++|.+ ..|++.+++.+.+.++.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------------------~~ka~~La~~~~~~~~~ 177 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------------------TSRAQALADVINNAVGR 177 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------------------HHHHHHHHHHHhhccCc
Confidence 447899999999999999999999999999998752 23788888887655443
No 61
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.24 E-value=0.00091 Score=71.03 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=56.1
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
+++++|+|||+||.|..++..|+..|+++|++++.+ ..|++.+++.+.... .+..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------------------~~ka~~La~~~~~~~---~~~~ 177 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------------------PDKLSRLVDLGVQVG---VITR 177 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------------------HHHHHHHHHHhhhcC---ccee
Confidence 568899999999999999999999999999998651 237777777765421 1111
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (679)
.. ..+.+.+.+.++|+||.||-.
T Consensus 178 ~~--------------------~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 178 LE--------------------GDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cc--------------------chhhhhhcccCCCEEEECCCC
Confidence 10 112334455789999999865
No 62
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.23 E-value=0.0019 Score=65.45 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=63.2
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|++++|+|||.|.+|...++.|...| .+|++|+.+. . +.+ ..++ .+ ..+..
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------~~l--------~~l~---~~--~~i~~- 58 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------ENL--------VKLV---EE--GKIRW- 58 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------HHH--------HHHH---hC--CCEEE-
Confidence 478999999999999999999999999 7999986520 0 011 1111 11 11222
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
....+ . ...+.++|+||.|||+.+.-..+...| ..++++-.+
T Consensus 59 -~~~~~-----------------~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~~ 100 (202)
T PRK06718 59 -KQKEF-----------------E----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNVI 100 (202)
T ss_pred -EecCC-----------------C----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEEC
Confidence 21100 1 234678999999999999888888888 456654333
No 63
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.21 E-value=0.0012 Score=70.33 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=43.8
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~in 434 (679)
+++++|+|+|+||.+..++..|+..|+++|+|++.+ .+ ...|++.+++.+.+..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt--------------~~-----~~~ka~~la~~~~~~~ 175 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR--------------DE-----FFDKALAFAQRVNENT 175 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC--------------cc-----HHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999998852 00 2458888888776543
No 64
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.08 E-value=0.00096 Score=60.23 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=63.4
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|++++|+|||.|.+|..-++.|...| .+++++..+. +.+ | ..++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~--------------~~~------~------------~~i~~~ 50 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI--------------EFS------E------------GLIQLI 50 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE--------------HHH------H------------TSCEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch--------------hhh------h------------hHHHHH
Confidence 478999999999999999999999999 7999988864 111 0 112221
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
.. .. ++.++++|+||.++|+.+....+-..|+++++|+-.+
T Consensus 51 --~~-------------------~~---~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 51 --RR-------------------EF---EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --ES-------------------S----GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --hh-------------------hH---HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 11 11 2336789999999999999999999999999987654
No 65
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.02 E-value=0.0018 Score=72.11 Aligned_cols=76 Identities=34% Similarity=0.445 Sum_probs=62.8
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|++++|+|||+|-.|.-+|++|...|+.+|+++. |+ .-||+.+|+.+. ++
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------RT------------~erA~~La~~~~-------~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------RT------------LERAEELAKKLG-------AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------CC------------HHHHHHHHHHhC-------Ce
Confidence 48899999999999999999999999999999953 42 347888887776 22
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.. ..+++.+.+.++|+||.+|.++.
T Consensus 226 ~~---------------------~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 226 AV---------------------ALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ee---------------------cHHHHHHhhhhCCEEEEecCCCc
Confidence 22 35678889999999999999876
No 66
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0019 Score=68.85 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=46.3
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP 435 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP 435 (679)
+++++|+|+|+||.+..|+..|+..|+.+|++++. -..|++.+++.+.+.++
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGA 175 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc
Confidence 36799999999999999999999999999999765 35689999999998876
No 67
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.96 E-value=0.0054 Score=65.97 Aligned_cols=84 Identities=27% Similarity=0.325 Sum_probs=61.1
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
+.+.+|+|+|+|.+|..++++|...|+.+|+++|.+ ..|++.+++.+. . ..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------------------~~ra~~la~~~g----~---~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------------------YERAEELAKELG----G---NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------------------HHHHHHHHHHcC----C---eE
Confidence 679999999999999999999999999999998762 235555555432 1 11
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHH
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC 495 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~ 495 (679)
. ..+.+.+.+.++|+||.||-+.+..-.+..+.
T Consensus 227 ~---------------------~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~ 259 (311)
T cd05213 227 V---------------------PLDELLELLNEADVVISATGAPHYAKIVERAM 259 (311)
T ss_pred E---------------------eHHHHHHHHhcCCEEEECCCCCchHHHHHHHH
Confidence 1 12345667788999999999988744444443
No 68
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.95 E-value=0.0023 Score=71.67 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=58.4
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.+.+++|+|+|+|+.|..++++|+..|+.+|+++... ..|++.+++.+. ...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------------------~~ra~~La~~~~----~~~-- 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------------------IEKAQKITSAFR----NAS-- 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHhc----CCe--
Confidence 4778999999999999999999999999999996541 125666555442 111
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.+ ..+.+.+.+.++|+||.||-+++
T Consensus 230 ~~---------------------~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 230 AH---------------------YLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred Ee---------------------cHHHHHHHhccCCEEEECcCCCC
Confidence 11 23566788899999999998865
No 69
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.81 E-value=0.0039 Score=65.91 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.4
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|+|+||.|..+++.|+..|+.+|++++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367889999999999999999999999999999876
No 70
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.76 E-value=0.0088 Score=67.00 Aligned_cols=77 Identities=30% Similarity=0.416 Sum_probs=56.8
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.+.+++|+|+|+|.+|..+++.|...|+.+++++|.+ ..|++..++.+. . .
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs----------------------~~ra~~la~~~g----~---~ 227 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT----------------------YERAEDLAKELG----G---E 227 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC----------------------HHHHHHHHHHcC----C---e
Confidence 3778999999999999999999999999999998762 124444444321 1 1
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHH
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~es 487 (679)
.+ ..+.+.+.+.++|+||.||.+.+.
T Consensus 228 ~i---------------------~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 228 AV---------------------KFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred Ee---------------------eHHHHHHHHhhCCEEEECCCCCCc
Confidence 11 224566778899999999987663
No 71
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.67 E-value=0.014 Score=59.35 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=67.7
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
|++++|+|||.|.+|..-++.|+..| .++|+|+.+.- +++ + .+.+.. +++-
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVvsp~~~-------------~~l--------~----~l~~~~---~i~~ 57 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG-AQLRVIAEELE-------------SEL--------T----LLAEQG---GITW 57 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC-CEEEEEcCCCC-------------HHH--------H----HHHHcC---CEEE
Confidence 78899999999999999999999999 48999987311 111 1 111111 2333
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
+...+ . .+.+.++|+||.+||+.+....+-..|...++++-.+
T Consensus 58 ~~~~~-------------------~--~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 58 LARCF-------------------D--ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EeCCC-------------------C--HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 32211 1 2346899999999999988888889999999988544
No 72
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.65 E-value=0.019 Score=50.30 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=60.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC--CEEEEE-eCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV--RKITLL-DNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV--g~ItlV-D~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
||.|||+|.+|..+++.|.+.|+ .+|.++ +. ...|++.++ +.++ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~~~----~~~~-~~~~~- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAELA----KEYG-VQATA- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHHHH----HHCT-TEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHHHH----Hhhc-ccccc-
Confidence 68999999999999999999994 344432 22 122344333 3333 22211
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHH-HHhcCCeEEEEee
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLL-CANTNKITITAAL 507 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~-~~~~~kp~I~aal 507 (679)
....+.++.+|+||.|+......-++..+ ....++.+|+.+-
T Consensus 53 -----------------------~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 53 -----------------------DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp -----------------------EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEEST
T ss_pred -----------------------CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeCC
Confidence 13456778999999999998888777777 5567888888643
No 73
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.63 E-value=0.00074 Score=68.01 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=48.8
Q ss_pred hHHhhcCCeEEEEcCChHHHH-HHHHHHHcCCCEE------EEE---eCCccCccCCCcCcc
Q 005745 358 NLDILSSRKCLLLGAGTLGCQ-VARMLMAWGVRKI------TLL---DNGRVAMSNPLRQSL 409 (679)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~-VA~~La~~GVg~I------tlV---D~D~Ve~sNl~RQ~L 409 (679)
-++++++++|.|+|.|+.|+. ++..|+.+||+.+ ++| |++..+++|+|||.+
T Consensus 99 a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 99 ALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 478999999999999999999 9999999999998 999 999999999999875
No 74
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.58 E-value=0.014 Score=57.97 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=60.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
.+++++|+|+|+ |++|..+++.|+..| .++++++.+ ..|++..++.+.+.+ ...+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~----------------------~~~~~~l~~~l~~~~-~~~~ 80 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD----------------------LERAQKAADSLRARF-GEGV 80 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC----------------------HHHHHHHHHHHHhhc-CCcE
Confidence 467899999996 999999999999998 588887652 225666666665433 3344
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.... ..+.+.+.+.+.++|+||.++-...
T Consensus 81 ~~~~------------------~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 81 GAVE------------------TSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred EEee------------------CCCHHHHHHHHhcCCEEEECCCCCc
Confidence 3332 1245666788899999999987654
No 75
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.51 E-value=0.0099 Score=56.37 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=31.7
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|+|+|++|..+++.|+..|..+++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998778998875
No 76
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.011 Score=67.68 Aligned_cols=122 Identities=18% Similarity=0.284 Sum_probs=90.3
Q ss_pred cccceEecccCCCChhhhhhhhhhhhhhhhhhhcCCchh--HHhhcCCeEEEEcCC-hHHHHHHHHHHHcCCCEEEEEeC
Q 005745 320 RKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLN--LDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 320 kl~p~~~dl~~~~dp~~la~~~~dlnlry~R~rllp~~g--q~kL~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+..|.+.|+...... +-+.+.+ .-+-|.-.-|+.. ..-+.+++|+|-|+| ++|+++++.+++.+.++|.++|.
T Consensus 208 ~~lP~~~~l~~~~~~--lreI~ie--DLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~ 283 (588)
T COG1086 208 RILPQLTDLKDLNGQ--LREIEIE--DLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR 283 (588)
T ss_pred EecCcHHHHHHhccc--cccCCHH--HHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC
Confidence 456766665542221 2222221 1245554555544 478999999999875 69999999999999999999887
Q ss_pred CccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhcc--
Q 005745 397 GRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILS-- 474 (679)
Q Consensus 397 D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~-- 474 (679)
+.+|-..+...|++.+|..++..+-.++ .+.+.+...+.+
T Consensus 284 ----------------------~E~~~~~i~~el~~~~~~~~~~~~igdV----------------rD~~~~~~~~~~~k 325 (588)
T COG1086 284 ----------------------DEYKLYLIDMELREKFPELKLRFYIGDV----------------RDRDRVERAMEGHK 325 (588)
T ss_pred ----------------------chHHHHHHHHHHHhhCCCcceEEEeccc----------------ccHHHHHHHHhcCC
Confidence 5667888889999999999998887766 578888999998
Q ss_pred CCEEEEeCC
Q 005745 475 HDVIFLLTD 483 (679)
Q Consensus 475 ~DvV~~~tD 483 (679)
.|+||-+..
T Consensus 326 vd~VfHAAA 334 (588)
T COG1086 326 VDIVFHAAA 334 (588)
T ss_pred CceEEEhhh
Confidence 899997643
No 77
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.48 E-value=0.02 Score=55.76 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=60.0
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|++++|+|||.|.+|...++.|...|. ++++|+.+.. +++ .++ +.+.+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------~~l---------------~~l-~~i~~~ 59 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------KEM---------------KEL-PYITWK 59 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------HHH---------------Hhc-cCcEEE
Confidence 5889999999999999999999999994 8888865421 111 010 112221
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT 498 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~ 498 (679)
... .. ++.++++|+||.+||+.+.-..+...|..+
T Consensus 60 --~~~-----------------~~----~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 60 --QKT-----------------FS----NDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred --ecc-----------------cC----hhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 110 01 123578999999999999999898888774
No 78
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.42 E-value=0.0073 Score=58.44 Aligned_cols=102 Identities=21% Similarity=0.358 Sum_probs=65.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHH--HHhhCCCcEEEEEe
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS--LERIFPAVAAEGVV 443 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~--L~~inP~v~v~~~~ 443 (679)
||.|+|+|..|+.+|..|+..| .++++.+.+. + .++.+.+. -....|++.....
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~---------------~-------~~~~i~~~~~n~~~~~~~~l~~~- 56 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE---------------E-------QIEEINETRQNPKYLPGIKLPEN- 56 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH---------------H-------HHHHHHHHTSETTTSTTSBEETT-
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH---------------H-------HHHHHHHhCCCCCCCCCcccCcc-
Confidence 7999999999999999999999 6777755533 0 11111111 0011233222210
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEEeeCc
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGF 509 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~--~~~kp~I~aalG~ 509 (679)
.. -..++++.++++|+||.++-+...|..+.++.. ..+.++|.+.-|+
T Consensus 57 -----------------i~-~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 57 -----------------IK-ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -----------------EE-EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred -----------------cc-cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 01 235667888999999999999999999998877 5677888877676
No 79
>PLN00203 glutamyl-tRNA reductase
Probab=96.39 E-value=0.011 Score=68.05 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=57.6
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
|.+++|+|||+|..|..++++|...|+.+|++++.. ..|++.+++.+ +++.+..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------------------~era~~La~~~----~g~~i~~ 317 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------------------EERVAALREEF----PDVEIIY 317 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------------------HHHHHHHHHHh----CCCceEe
Confidence 678999999999999999999999999999997651 22555554443 3333322
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
. ..+.+.+.+.++|+||.||.+..
T Consensus 318 ~---------------------~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 318 K---------------------PLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred e---------------------cHhhHHHHHhcCCEEEEccCCCC
Confidence 2 23455677889999999997665
No 80
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.23 E-value=0.03 Score=62.85 Aligned_cols=35 Identities=49% Similarity=0.723 Sum_probs=32.8
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.+++|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999866
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.042 Score=56.64 Aligned_cols=96 Identities=24% Similarity=0.293 Sum_probs=65.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~ 444 (679)
++++|+|+|-+|..+|+.|...| ..++++|.|. + ++ .+.+.+. ....++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~--------------~--------~~---~~~~~~~---~~~~~v~g 51 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDE--------------E--------RV---EEFLADE---LDTHVVIG 51 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcCH--------------H--------HH---HHHhhhh---cceEEEEe
Confidence 47999999999999999999999 4555555521 1 11 2222221 22233321
Q ss_pred ccCCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHh-cCCeEEEE
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITA 505 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~lin~~~~~-~~kp~I~a 505 (679)
+ ..+.+-+.++ +.++|+|+-+|++-+.-..+..++.+ ++.|-+.+
T Consensus 52 d----------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 52 D----------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred c----------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 1 1356667676 88999999999998888877777766 88887765
No 82
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.18 E-value=0.016 Score=57.25 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.3
Q ss_pred hhcCCeEEEEcCCh-HHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGg-LGs~VA~~La~~GVg~ItlVD~ 396 (679)
.|.+++|+|||+|. +|..+|++|.+.|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 48899999999998 59999999999999 6888874
No 83
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.14 E-value=0.033 Score=68.76 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=63.6
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCC-C------------EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHH
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-R------------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GV-g------------~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae 428 (679)
-+.++|+|||||.+|..+|++|++.+- . .+++.|. ...+++.+++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~----------------------~~~~a~~la~ 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL----------------------YLKDAKETVE 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC----------------------CHHHHHHHHH
Confidence 357799999999999999999998532 1 1333332 2234444433
Q ss_pred HHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
. .|+++. +..++ .+.+.+.++++++|+|+.|+-..- -..+...|.++|+.+++.
T Consensus 625 ~----~~~~~~--v~lDv----------------~D~e~L~~~v~~~DaVIsalP~~~-H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 625 G----IENAEA--VQLDV----------------SDSESLLKYVSQVDVVISLLPASC-HAVVAKACIELKKHLVTA 678 (1042)
T ss_pred h----cCCCce--EEeec----------------CCHHHHHHhhcCCCEEEECCCchh-hHHHHHHHHHcCCCEEEC
Confidence 2 344433 22222 356777888889999999998743 345666777777776654
No 84
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.05 E-value=0.026 Score=60.50 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCC-EEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg-~ItlVD~ 396 (679)
+||.|||+|++|+.+|..|+..|+. +|.++|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4899999999999999999999986 8999987
No 85
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.00 E-value=0.044 Score=56.63 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=68.9
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
-.+++++|||||.|.+|.-=++.|+..| .+||+|-.+. . +++ +.+ .+ .+.+++
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i------------~-~el--------~~l----~~-~~~i~~ 73 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKF------------S-KEF--------LDL----KK-YGNLKL 73 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCC------------C-HHH--------HHH----Hh-CCCEEE
Confidence 3577999999999999999999999999 7799986641 1 111 111 11 223333
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
. ...+ . .+.++++++||.|||+++.-..+...|.+.++++.++
T Consensus 74 ~--~r~~-----------------~----~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 74 I--KGNY-----------------D----KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred E--eCCC-----------------C----hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 2 2111 1 2345789999999999999999999999999988766
No 86
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.94 E-value=0.049 Score=50.86 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=64.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 366 KCLLLGA-GTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
||+|+|+ |-.|..+++.+.. -|+.=.-.+|... +. +--.|+ | + +. ++.-.++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~---g--------~-~~----~~~~~~~- 55 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDV---G--------E-LA----GIGPLGV- 55 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBC---H--------H-HC----TSST-SS-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchh---h--------h-hh----CcCCccc-
Confidence 7999999 9999999999999 6666666667643 00 112333 2 0 00 1110000
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEeeCcc
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFD 510 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aalG~~ 510 (679)
.-.++++++++.+|+|||.| +++.-.-.-++|.++++|+|.+.-|+.
T Consensus 56 -------------------~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 56 -------------------PVTDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp -------------------BEBS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred -------------------ccchhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 12356778888899999999 677776677888999999999988874
No 87
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.87 E-value=0.026 Score=61.72 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.3
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHH-cCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMA-WGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~-~GVg~ItlVD~ 396 (679)
.|++++|+|+|+ |.+|+.++++|+. .|++++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 588999999999 8999999999985 68999999765
No 88
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.80 E-value=0.069 Score=59.07 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=32.2
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+...+|+|+|+|.+|..+++.|.++|+ +++++|.
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~ 198 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDI 198 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEEC
Confidence 4678899999999999999999999998 6999887
No 89
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.76 E-value=0.053 Score=58.78 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=67.5
Q ss_pred cCCeEEEEcCChHHHHHHHHHH-HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..++++|+|+|+.|-..++.|+ ..|++++.++|. ...|++..++.+++.+ .+++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~-~~~~~~ 182 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKF-NTEIYV 182 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEE
Confidence 4778999999999999998876 569999999876 2347788888877543 233332
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
+ ++.++.+.++|+|+.||-+.+ .++. -+.+.|+-++..
T Consensus 183 ~-----------------------~~~~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 183 V-----------------------NSADEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINAV 220 (325)
T ss_pred e-----------------------CCHHHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEec
Confidence 2 334567789999999998874 3445 555667765543
No 90
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.74 E-value=0.045 Score=59.37 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=59.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHH-HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..++++|||+|+.|-..++.|. ..|+.++++++. ...|++..++.+++.++ +++..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~ 184 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTA 184 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEE
Confidence 3578999999999999999997 578999999755 34588888888875442 33322
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.+++++.+.++|+|+.||-+.+
T Consensus 185 -----------------------~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 185 -----------------------ATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred -----------------------eCCHHHHhccCCEEEEecCCCC
Confidence 2345677789999999998743
No 91
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.72 E-value=0.055 Score=60.92 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=32.5
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+.+++|+|+|+|.+|..+|+.|.+.|+ +++++|.|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~d 244 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVD 244 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3689999999999999999999999999 78888763
No 92
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.70 E-value=0.014 Score=60.29 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=35.2
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D 397 (679)
.+++.||+|+|+|+.|..+|+.|+..|+. +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57889999999999999999999999999 99999986
No 93
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.69 E-value=0.049 Score=58.89 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=62.0
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..+++++|.|||.|.+|..+|+.|.+.|+ ++..+|... + .. +.+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~------~~-------------------~~~~- 176 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K------SW-------------------PGVQ- 176 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C------CC-------------------CCce-
Confidence 45789999999999999999999999998 555665411 0 00 0000
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHH---hcCCeEEEEee
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCA---NTNKITITAAL 507 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~lin~~~~---~~~kp~I~aal 507 (679)
.. .....++++++++|+|+.+. .+.+++.+++.-.. +.+..+||++-
T Consensus 177 -~~--------------------~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 177 -SF--------------------AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred -ee--------------------cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCC
Confidence 10 02346778999999988855 47778988875322 33456777653
No 94
>PLN02928 oxidoreductase family protein
Probab=95.69 E-value=0.032 Score=61.12 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=65.0
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..|.+++|+|||.|.+|..+|+.|...|+ +++.+|... .+.. .... | .|.-.+
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~---~--------------~~~~~~ 207 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGL---L--------------IPNGDV 207 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhh---c--------------cccccc
Confidence 46899999999999999999999999998 777777520 0000 0000 0 000000
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHh---cCCeEEEEe
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCAN---TNKITITAA 506 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~---~~kp~I~aa 506 (679)
...... ......++++++++|+|+.++- +.+++.+++.-..+ .+..+||++
T Consensus 208 ~~~~~~----------------~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 208 DDLVDE----------------KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccccc----------------cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 000000 0123567899999999999764 77888888764433 344566765
No 95
>PRK09242 tropinone reductase; Provisional
Probab=95.66 E-value=0.059 Score=55.06 Aligned_cols=62 Identities=21% Similarity=0.392 Sum_probs=46.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
+++++++|.|+ |++|..+++.|+..|. ++++++.+ ..+.+.+.+.+.+.+|+.++.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~~ 63 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD----------------------ADALAQARDELAEEFPEREVH 63 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCCeEE
Confidence 57889999986 7999999999999996 57777652 123445566666667777777
Q ss_pred EEeccc
Q 005745 441 GVVMAI 446 (679)
Q Consensus 441 ~~~~~I 446 (679)
.+..++
T Consensus 64 ~~~~Dl 69 (257)
T PRK09242 64 GLAADV 69 (257)
T ss_pred EEECCC
Confidence 776554
No 96
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.052 Score=57.40 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=30.2
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..+++++|+|.|+ ||+|..+|+.|+..|. ++.+++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567889999986 8999999999999997 6667664
No 97
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.48 E-value=0.085 Score=56.19 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=27.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999986 47887763
No 98
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.44 E-value=0.14 Score=52.57 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=59.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCC---CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GV---g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
+..||.|||+|..|..+++.|+..|. ..+.+++.. ...|++.+++. + ++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~---------------------~~~~~~~~~~~----~-~~~- 55 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS---------------------NVEKLDQLQAR----Y-NVS- 55 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC---------------------CHHHHHHHHHH----c-CcE-
Confidence 45789999999999999999998873 223332210 11233333322 2 122
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHh-cCCeEEEEeeCc
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITAALGF 509 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~-~~kp~I~aalG~ 509 (679)
.. .+..++++++|+||.|+-+...+-.+..+... .++.+|+..-|.
T Consensus 56 -~~-----------------------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 56 -TT-----------------------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred -Ee-----------------------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECCCC
Confidence 11 12345668899999999988877777766532 356778764443
No 99
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.12 Score=53.02 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=44.3
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
++++++|+|.|+ ||+|..+++.|+..|. ++.++|. ...+.+.+++.+.+.+++.++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r----------------------~~~~~~~~~~~~~~~~~~~~~ 60 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL----------------------DAALAERAAAAIARDVAGARV 60 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhccCCceE
Confidence 467889999985 7999999999999997 4777664 123455556666654455566
Q ss_pred EEEeccc
Q 005745 440 EGVVMAI 446 (679)
Q Consensus 440 ~~~~~~I 446 (679)
..+..++
T Consensus 61 ~~~~~Dl 67 (260)
T PRK07063 61 LAVPADV 67 (260)
T ss_pred EEEEccC
Confidence 6665544
No 100
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.41 E-value=0.071 Score=57.54 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=57.3
Q ss_pred cCCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..++|+|||+|+.|..+++.+.. .|+.+|++++. ...|++..++.+++.. ..+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g--~~~~~ 179 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQG--FDAEV 179 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CceEE
Confidence 57899999999999999987775 68899999765 3557888888887642 22222
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (679)
. +..++.+.++|+|+.||.+.
T Consensus 180 ~-----------------------~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 180 V-----------------------TDLEAAVRQADIISCATLST 200 (314)
T ss_pred e-----------------------CCHHHHHhcCCEEEEeeCCC
Confidence 1 23456678999999999965
No 101
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.30 E-value=0.082 Score=59.21 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=63.0
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
+++++|+|+|+|++|..+|+.|+..|. +++++|.+.- + ..+...+.|.+. +++ .
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~-------------~--------~~~~~~~~l~~~--~~~--~ 56 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE-------------D--------QLKEALEELGEL--GIE--L 56 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch-------------H--------HHHHHHHHHHhc--CCE--E
Confidence 678999999999999999999999995 7899887431 1 111222334332 233 2
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~ 504 (679)
+..+. . .+...++|+||.++...+..- .-..|+++++|++.
T Consensus 57 ~~~~~------------------~---~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 57 VLGEY------------------P---EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred EeCCc------------------c---hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 22111 1 134578999999988655443 44567888998886
No 102
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.30 E-value=0.088 Score=54.04 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=45.7
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
++++.++|.|+ ||+|..+++.|+..|.. +.+++.+. .|.+.+++.+.+.+|+.++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~ 62 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE----------------------ERLASAEARLREKFPGARLL 62 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH----------------------HHHHHHHHHHHhhCCCceEE
Confidence 67889999987 68999999999999974 67766521 24445566677777777777
Q ss_pred EEeccc
Q 005745 441 GVVMAI 446 (679)
Q Consensus 441 ~~~~~I 446 (679)
.+..++
T Consensus 63 ~~~~D~ 68 (265)
T PRK07062 63 AARCDV 68 (265)
T ss_pred EEEecC
Confidence 766554
No 103
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.19 E-value=0.087 Score=55.48 Aligned_cols=104 Identities=20% Similarity=0.311 Sum_probs=67.7
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHc----CC------CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHH
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~----GV------g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~ 429 (679)
.+|++.||+++|+|+.|..+|+.|+.+ |+ ++|.++|..=+=.. ++.+-...+..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~----------------~r~~l~~~~~~ 84 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTD----------------DREDLNPHKKP 84 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBT----------------TTSSHSHHHHH
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEec----------------cCccCChhhhh
Confidence 569999999999999999999999999 99 89999998644111 11111111111
Q ss_pred HH-hhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccC--CEEEEeCCChH--HHHHHHHHHHhcCCeEEE
Q 005745 430 LE-RIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSH--DVIFLLTDTRE--SRWLPTLLCANTNKITIT 504 (679)
Q Consensus 430 L~-~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~--DvV~~~tDs~e--sR~lin~~~~~~~kp~I~ 504 (679)
+. ..+|. .....+.+.+++. |++|.++.-.- ++-++..++.....|+|.
T Consensus 85 ~a~~~~~~--------------------------~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 85 FARKTNPE--------------------------KDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHBSSSTT--------------------------T--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred hhccCccc--------------------------ccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 11 11110 1113677788887 99999875332 566788888888899886
Q ss_pred E
Q 005745 505 A 505 (679)
Q Consensus 505 a 505 (679)
+
T Consensus 139 ~ 139 (255)
T PF03949_consen 139 P 139 (255)
T ss_dssp E
T ss_pred E
Confidence 5
No 104
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.11 Score=53.38 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=29.8
Q ss_pred HhhcCCeEEEEcC-C-hHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-G-TLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-G-gLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..+++++++|.|+ | |+|..+++.|+..|.. +.++|.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 4566789999997 6 7999999999999975 777654
No 105
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.15 E-value=0.19 Score=51.16 Aligned_cols=99 Identities=19% Similarity=0.095 Sum_probs=61.4
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCC--CcEEEEE
Q 005745 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP--AVAAEGV 442 (679)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP--~v~v~~~ 442 (679)
||.||| +|.+|+.+++.|+..| .+++++|. ...|++.+++....... ++.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r----------------------~~~~~~~l~~~~~~~~~~~g~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR----------------------DLEKAEEAAAKALEELGHGGSDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc----------------------CHHHHHHHHHHHHhhccccCCCceEE
Confidence 699997 8999999999999999 56777654 12234443333222111 1110000
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH-hcCCeEEEEeeCc
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA-NTNKITITAALGF 509 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~-~~~kp~I~aalG~ 509 (679)
.....+.++++|+||.|+-....+.++..+.. ..++.+|++.-|+
T Consensus 59 ----------------------~~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi 104 (219)
T TIGR01915 59 ----------------------GADNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPL 104 (219)
T ss_pred ----------------------EeChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCc
Confidence 01224557789999999998887777666643 2457788875443
No 106
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.14 E-value=0.071 Score=56.98 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=32.2
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5789999999999999999999999997 8888776
No 107
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.12 E-value=0.1 Score=52.67 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|+|+ |++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 67889999986 88999999999999976 8887764
No 108
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.12 E-value=0.18 Score=53.46 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=59.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC---CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GV---g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
+.+|.+||+|-+|..+++.|...|. .+|.+.|. ...|++.+++. . +++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------------------~~~~~~~l~~~---~--g~~-- 52 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------------------NVSNLKNASDK---Y--GIT-- 52 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------------------CHHHHHHHHHh---c--CcE--
Confidence 4589999999999999999999885 24555443 12233332221 1 222
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEEeeC
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALG 508 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~--~~~kp~I~aalG 508 (679)
.. ....++++++|+||.|+-....+-++..+.. ..+..+|+.+-|
T Consensus 53 ~~-----------------------~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AG 99 (272)
T PRK12491 53 IT-----------------------TNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAG 99 (272)
T ss_pred Ee-----------------------CCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCC
Confidence 11 1223456789999999998777776776653 345677886444
No 109
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.11 E-value=0.098 Score=56.83 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=58.6
Q ss_pred cCCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..++++|+|+|+.|...+..|+. .|+.++++++. ...|++..++.+++.. ++++..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~-g~~v~~ 187 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAEL-GIPVTV 187 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhcc-CceEEE
Confidence 35789999999999999999985 67899999755 3447888888877543 233322
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.+++++.+.++|+|+.||-+.+
T Consensus 188 -----------------------~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 188 -----------------------ARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred -----------------------eCCHHHHHccCCEEEEeeCCCC
Confidence 2345677789999999998754
No 110
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.10 E-value=0.11 Score=56.31 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=30.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCC-EEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg-~ItlVD~ 396 (679)
+..||.|||+|.+|+.+|..|+..|+. +|.|+|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 456999999999999999999999985 7999986
No 111
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.08 E-value=0.14 Score=53.28 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=56.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV--g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
.+|.|||+|.+|..+++.|...|. ..++++|. ...+++.+++. + ++.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r----------------------~~~~~~~~~~~----~-g~~~--- 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP----------------------SPEKRAALAEE----Y-GVRA--- 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC----------------------CHHHHHHHHHh----c-CCee---
Confidence 479999999999999999999884 34555543 11223322222 1 1111
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
.....+.++++|+||.|+-....+-++..+....++.+|+.
T Consensus 53 ----------------------~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 53 ----------------------ATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred ----------------------cCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 01223456789999999987777766666654445667765
No 112
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.16 Score=52.46 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.0
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 67899999997 8999999999999997 6777765
No 113
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.04 E-value=0.085 Score=56.75 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=58.6
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
...++|+|+|+|..|...++.|.. .|+.+|.+.|. ...|++..++.+++.. +.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~--~~~~ 178 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALG--PTAE 178 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CeeE
Confidence 356899999999999999999975 68889988766 3457888888887532 2221
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.+..++.+.++|+|+.||-+.+
T Consensus 179 ------------------------~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 179 ------------------------PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred ------------------------ECCHHHHhhcCCEEEEccCCCC
Confidence 1234567789999999999864
No 114
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.097 Score=55.95 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=44.2
Q ss_pred HhhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 005745 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~ 438 (679)
..+++++++|.| .||+|.++|+.|++.|. ++.+++.+ ..|++.+.+.|.+.+|+.+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~----------------------~~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN----------------------RAKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC----------------------HHHHHHHHHHHHHhCCCCc
Confidence 456788999997 57899999999999995 67776542 2245555555665566555
Q ss_pred EEEEeccc
Q 005745 439 AEGVVMAI 446 (679)
Q Consensus 439 v~~~~~~I 446 (679)
+..+..++
T Consensus 67 v~~~~~Dl 74 (313)
T PRK05854 67 LSLRALDL 74 (313)
T ss_pred eEEEEecC
Confidence 55555443
No 115
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.03 E-value=0.15 Score=57.40 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=31.7
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+++|+|+|+|.+|..+|+.+...|+ +++++|.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~ 233 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEV 233 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3678999999999999999999999999 6888876
No 116
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.03 E-value=0.068 Score=57.82 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=62.1
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..|++++|.|||.|.+|..+|+.|...|+. +..+|.. ...++ .
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~-------------~~~~~---~-------------------- 185 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK-------------GASVC---R-------------------- 185 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC-------------ccccc---c--------------------
Confidence 479999999999999999999999999984 5544420 00001 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhc---CCeEEEEee
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAAL 507 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~~---~kp~I~aal 507 (679)
. ....++++++++|+|+.++- +.++|.+++.-..+. +..+||.+-
T Consensus 186 --~---------------------~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aR 234 (314)
T PRK06932 186 --E---------------------GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGR 234 (314)
T ss_pred --c---------------------ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCC
Confidence 0 01246789999999988665 788999988765543 445677653
No 117
>PRK04148 hypothetical protein; Provisional
Probab=95.02 E-value=0.22 Score=47.70 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=71.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
++.+|++||+| .|..+|+.|+..|. .++.+|.+ ...++.+++. . +.++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~----------------------~~aV~~a~~~------~--~~~v 63 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDIN----------------------EKAVEKAKKL------G--LNAF 63 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECC----------------------HHHHHHHHHh------C--CeEE
Confidence 45789999999 99999999999995 78887762 2223333322 1 2334
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEeeCcce
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDS 511 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aalG~~g 511 (679)
..++ .+.-.++.+++|+|..+--.+|-..-+-+++.+.+.+++--.++.+.
T Consensus 64 ~dDl------------------f~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 64 VDDL------------------FNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ECcC------------------CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3333 11223577899999999999998888889999999999877766554
No 118
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.93 E-value=0.048 Score=52.14 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=53.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCC-CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GV-g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
.||.|||+ |.+|+.+|..|+..|+ .+|.|+|. ...|++.-+.-|....+.......
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~ 58 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI----------------------NEDKAEGEALDLSHASAPLPSPVR 58 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES----------------------SHHHHHHHHHHHHHHHHGSTEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc----------------------Ccccceeeehhhhhhhhhcccccc
Confidence 38999999 9999999999999998 45999887 223666666666666433322221
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (679)
.. . ...+.++++|+||.+...
T Consensus 59 i~--------------------~-~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 59 IT--------------------S-GDYEALKDADIVVITAGV 79 (141)
T ss_dssp EE--------------------E-SSGGGGTTESEEEETTST
T ss_pred cc--------------------c-ccccccccccEEEEeccc
Confidence 10 0 223456889999988875
No 119
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.92 E-value=0.009 Score=59.35 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=27.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCcc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~V 399 (679)
||.|||+|..|..+|..+++.| -+++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence 6999999999999999999999 78899998544
No 120
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.90 E-value=0.11 Score=54.58 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=71.0
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCC----------EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHH
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR----------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg----------~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~ 429 (679)
++|++.||+++|+|+.|..+|+.|..+|++ +|.++|..=+=..+ | .|. -..|...+ +.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~--r------~~l---~~~~~~~~-~~ 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKN--R------KET---CPNEYHLA-RF 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCC--C------Ccc---CHHHHHHH-HH
Confidence 678999999999999999999999999998 99999986442111 1 111 11222211 11
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCCh--HHHHHHHHHHHhcCCeEEEE
Q 005745 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTR--ESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 430 L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~--esR~lin~~~~~~~kp~I~a 505 (679)
.++. .....+.+.++ +.|++|.++.-. =++-++..++.....|+|.+
T Consensus 89 ---~~~~--------------------------~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 89 ---ANPE--------------------------RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred ---cCcc--------------------------cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 1110 01246677788 889999877622 25667888888888898865
No 121
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.89 E-value=0.17 Score=54.29 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
..||.|||+|..|+.+|+.|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999995 68888875
No 122
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.88 E-value=0.059 Score=55.18 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=64.1
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|++++|+|||.|.+|.-=++.|+..| .+++++-.+. ..++ .. +.+..+ +.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-------------~~el--------~~----~~~~~~---i~ 59 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-------------EPEL--------KA----LIEEGK---IK 59 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-------------cHHH--------HH----HHHhcC---cc
Confidence 578999999999999999999999999 5666654422 1111 11 111111 11
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
-+. .+...+.+..+++||-+||+.+--..+...|..+++|+-.+
T Consensus 60 ~~~---------------------~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 60 WIE---------------------REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred hhh---------------------cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 111 11112333459999999999999889999999999976544
No 123
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.87 E-value=0.15 Score=54.44 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=72.4
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHc----CC------CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHH
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~----GV------g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~ 429 (679)
.+|++.||+++|+|+.|..+|+.|+.+ |+ ++|.++|..=+=..+ | .|+ -..|.+-+..
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l---~~~~~~~a~~- 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDL---TPFKKPFARK- 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------Ccc---hHHHHHHHhh-
Confidence 678899999999999999999999999 99 799999986542211 2 112 2233332221
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCC--ChHHHHHHHHHHHhcCCeEEEE
Q 005745 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTD--TRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 430 L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tD--s~esR~lin~~~~~~~kp~I~a 505 (679)
.++ . ....+.+.++ +.|++|.++. ..=++-++..++.....|+|.+
T Consensus 89 ---~~~-------~--------------------~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 89 ---DEE-------K--------------------EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred ---cCc-------c--------------------cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 121 0 1235677888 7899999885 2335667888888888898865
No 124
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.85 E-value=0.17 Score=56.76 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.6
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+.+++|+|+|+|.+|..+|+.+..+|. +++++|.|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~d 227 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVD 227 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCC
Confidence 689999999999999999999999998 58888753
No 125
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.15 Score=54.46 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=28.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++|.|||+|..|+.+|..|+..|. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 579999999999999999999996 6888885
No 126
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.81 E-value=0.19 Score=54.78 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred hhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEe
Q 005745 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 357 ~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD 395 (679)
.+++.|++++|.|||.|.+|..+|++|...|+ ++++.|
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 35788999999999999999999999999998 455544
No 127
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.80 E-value=0.084 Score=57.77 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=34.1
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.|.+++|||||+|-.|..++++|...|+++|+++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4789999999999999999999999999999997654
No 128
>PRK09186 flagellin modification protein A; Provisional
Probab=94.75 E-value=0.2 Score=50.89 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=27.5
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD 395 (679)
+++++|+|.|+ |++|.++|+.|+..|. ++.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999986 7999999999999996 466554
No 129
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.72 E-value=0.14 Score=55.64 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=32.1
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++..||.|||+|.+|+.+|..|+..|+..|.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 56689999999999999999999999877999987
No 130
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.72 E-value=0.19 Score=51.21 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=30.4
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467899999986 9999999999999997 5777766
No 131
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.67 E-value=0.11 Score=56.03 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=31.8
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..|.+++|.|||.|.+|..+|+.|.+.|+ ++..+|.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 57999999999999999999999988897 6667675
No 132
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.64 E-value=0.26 Score=51.85 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.2
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.++++|+|+|+||+|..++..|+..|. +++++|.+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357799999999999999999999996 89998864
No 133
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.62 E-value=0.19 Score=54.07 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.3
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
..++.++|.|+ ||+|.++|+.|++.|. ++.+++.+ ..|.+.+++.+++.++..++.
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~----------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN----------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC----------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 35789999986 7899999999999997 57777652 225566667777777777777
Q ss_pred EEeccc
Q 005745 441 GVVMAI 446 (679)
Q Consensus 441 ~~~~~I 446 (679)
.+..++
T Consensus 108 ~~~~Dl 113 (320)
T PLN02780 108 TVVVDF 113 (320)
T ss_pred EEEEEC
Confidence 666554
No 134
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.56 E-value=0.065 Score=46.61 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.8
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+..++++|+|+|+.|..++..|...|..++.++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999999899999988
No 135
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.55 E-value=0.11 Score=56.27 Aligned_cols=87 Identities=26% Similarity=0.272 Sum_probs=61.5
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..|.+++|.|||.|.+|..||+.|...|+ ++..+|... + .. +
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~-------~-------~~---~-------------------- 185 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG-------R-------PA---R-------------------- 185 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-------C-------cc---c--------------------
Confidence 46999999999999999999999999998 455555310 0 00 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhc---CCeEEEEee
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAAL 507 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~~---~kp~I~aal 507 (679)
. ....++++++++|+|+.++- +.++|.+++.-..+. +..+||.+-
T Consensus 186 --~---------------------~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 186 --P---------------------DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred --c---------------------cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 0 00136788999999888655 788999988765543 345677653
No 136
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.51 E-value=0.11 Score=56.19 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=62.7
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..|.+++|.|||.|.+|..+|+.+...|. ++..+|... +. .+. +
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~-------~~-----~~~---~-------------------- 184 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG-------KN-----KNE---E-------------------- 184 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc-------cc-----ccc---C--------------------
Confidence 47999999999999999999999999987 566666510 00 000 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhc---CCeEEEEee
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAAL 507 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~~---~kp~I~aal 507 (679)
+ ....++++++.+|+|+.++- +.++|.+++.-..+. +..+||.+-
T Consensus 185 --~---------------------~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aR 233 (311)
T PRK08410 185 --Y---------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGR 233 (311)
T ss_pred --c---------------------eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCC
Confidence 0 01246788999999888665 778999988766544 345677653
No 137
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.50 E-value=0.21 Score=52.61 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=27.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
||+|+|+|.+|+.+|..|+..| .+++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 6999999999999999999999 47899886
No 138
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.48 E-value=0.16 Score=52.81 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=55.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
+|.|||+|-+|..+++.|...|.. .+.+.|. ...|++.++ +..+.+.+ .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r----------------------~~~~~~~l~----~~~~~~~~--~- 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR----------------------NAQIAARLA----ERFPKVRI--A- 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC----------------------CHHHHHHHH----HHcCCceE--e-
Confidence 699999999999999999998842 2233221 122333333 32332221 1
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
....++++++|+||.|+-....+-++..+....++.+|+.
T Consensus 53 ----------------------~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis~ 92 (258)
T PRK06476 53 ----------------------KDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVISV 92 (258)
T ss_pred ----------------------CCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEEE
Confidence 1233456789999999997556665555543456777775
No 139
>PRK07574 formate dehydrogenase; Provisional
Probab=94.47 E-value=0.19 Score=55.96 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=31.3
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..|.+++|.|||+|.+|..+|+.|...|+ ++..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 45899999999999999999999999998 5666564
No 140
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.43 E-value=0.33 Score=49.09 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=32.8
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
..|++++|+|+|.|.+|..+|+.|...|. +++++|.+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 45889999999999999999999999997 67787754
No 141
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.40 E-value=0.18 Score=54.39 Aligned_cols=31 Identities=35% Similarity=0.645 Sum_probs=28.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999999999998 68999885
No 142
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.35 E-value=0.19 Score=54.73 Aligned_cols=94 Identities=30% Similarity=0.394 Sum_probs=64.3
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..|.+++|.|||+|.+|+.||+.|..+|+.-+. +|. |...+. + ..
T Consensus 138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~-------------~~~~~~-------~--------------~~ 182 (324)
T COG0111 138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDP-------------YSPRER-------A--------------GV 182 (324)
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECC-------------CCchhh-------h--------------cc
Confidence 378899999999999999999999999975443 343 111111 0 00
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHh---cCCeEEEEeeC
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCAN---TNKITITAALG 508 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~lin~~~~~---~~kp~I~aalG 508 (679)
.++ ...+.++++++++|+|+..+ -+.++|.+++.--.+ .+..+||++-|
T Consensus 183 ~~~--------------------~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG 235 (324)
T COG0111 183 DGV--------------------VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARG 235 (324)
T ss_pred ccc--------------------eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCc
Confidence 011 12456889999999988855 477899999875443 34467787644
No 143
>PRK06194 hypothetical protein; Provisional
Probab=94.35 E-value=0.28 Score=50.96 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=29.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999985 8999999999999997 6778776
No 144
>PRK07680 late competence protein ComER; Validated
Probab=94.32 E-value=0.29 Score=51.49 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=25.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC---CEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV---g~ItlVD~ 396 (679)
+|.|||+|.+|+.+++.|...|. ..++++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 69999999999999999999984 45666544
No 145
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.32 E-value=0.35 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.584 Sum_probs=21.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV 388 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV 388 (679)
||.+||+|.+|+.+++.|...|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999985
No 146
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.32 E-value=0.26 Score=52.90 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=29.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcC-CCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWG-VRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~G-Vg~ItlVD~D 397 (679)
+++++|+|.|+ |++|+.+++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 46789999986 899999999999987 4578888753
No 147
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.30 E-value=0.19 Score=50.67 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=30.2
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|+|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 67889999998 9999999999999997 5788775
No 148
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.28 E-value=0.32 Score=50.99 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=57.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHc-CCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAW-GVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~-GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
.||+|+|+ |.+|..+++.+... ++.-..++|.+. .| . .. + . ..++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~------~~--------~---~~-~---------~-~~~i----- 48 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG------SP--------L---VG-Q---------G-ALGV----- 48 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC------cc--------c---cc-c---------C-CCCc-----
Confidence 48999999 99999999998864 455555566532 11 0 00 0 0 0000
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEeeCc
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGF 509 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aalG~ 509 (679)
...+++++++++.|+|++++ +++.-.-....|.++|++++-+..|+
T Consensus 49 --------------------~~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 49 --------------------AITDDLEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred --------------------cccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 01234455666789999888 44555667778888899888665555
No 149
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=94.23 E-value=0.18 Score=55.00 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=60.6
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..+.+++|.|+|+|.+|.++|+.|-..| ..|.. ++-.+ .. -+.+.+...+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y--------~~r~~------------~~--~~~~~~~~~~------- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY--------HSRTQ------------LP--PEEAYEYYAE------- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee--------ecccC------------Cc--hhhHHHhccc-------
Confidence 7899999999999999999999999977 44433 11111 11 1111111111
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEE-EEeCCChHHHHHHHHHHHhc-C--CeEEEEeeC
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVI-FLLTDTRESRWLPTLLCANT-N--KITITAALG 508 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV-~~~tDs~esR~lin~~~~~~-~--kp~I~aalG 508 (679)
....++++.++|+| +.|-.+.+++.++|.-...+ + ..+||.+.|
T Consensus 208 -------------------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 208 -------------------------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred -------------------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence 12345677888975 55778999999999855433 2 356676554
No 150
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.22 E-value=0.33 Score=49.41 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.9
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 356789999988 9999999999999997 5667665
No 151
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.21 E-value=0.58 Score=54.69 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.0
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.-.++.|+|.|+ |++|..+++.|++.|. ++++++.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R 112 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR 112 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 3445678999986 8999999999999996 4555444
No 152
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.19 E-value=0.3 Score=51.68 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.6
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..+++++|+|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 5677899999986 9999999999999996 6777664
No 153
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.09 E-value=0.21 Score=56.97 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=32.7
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
..|.+++|+|+|+|.+|..+|+.|.+.|. +++++|.|
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d 286 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID 286 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36899999999999999999999999998 68777653
No 154
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.07 E-value=0.091 Score=55.70 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=28.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999996 69999864
No 155
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.25 Score=50.28 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=29.3
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |++|..+++.|++.|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999986 9999999999999997 5776654
No 156
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.29 Score=49.50 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
+++++|.| .||+|..+++.|+..|. ++++++.+. .+.+.+.+.+.+.+|+.++..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT----------------------DRLEELKAELLARYPGIKVAVA 58 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 56788887 78999999999999994 777776621 1334445555666777777777
Q ss_pred eccc
Q 005745 443 VMAI 446 (679)
Q Consensus 443 ~~~I 446 (679)
..++
T Consensus 59 ~~D~ 62 (248)
T PRK08251 59 ALDV 62 (248)
T ss_pred EcCC
Confidence 6654
No 157
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=93.99 E-value=0.12 Score=55.49 Aligned_cols=79 Identities=28% Similarity=0.508 Sum_probs=49.4
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCC--cEEE--E
Q 005745 367 CLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA--VAAE--G 441 (679)
Q Consensus 367 VlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~--v~v~--~ 441 (679)
|||-| +|++|++++++|++.|..+|.++|.|. ++--.+.+.+++.+|+ +... .
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E----------------------~~l~~l~~~l~~~~~~~~v~~~~~~ 58 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDE----------------------NKLYELERELRSRFPDPKVRFEIVP 58 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-H----------------------HHHHHHHHHCHHHC--TTCEEEEE-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCCh----------------------hHHHHHHHHHhhcccccCcccccCc
Confidence 56774 678999999999999999999999843 3444455556555544 4322 2
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTD 483 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tD 483 (679)
+..+| .+.+.+..+++ +.|+||-+..
T Consensus 59 vigDv----------------rd~~~l~~~~~~~~pdiVfHaAA 86 (293)
T PF02719_consen 59 VIGDV----------------RDKERLNRIFEEYKPDIVFHAAA 86 (293)
T ss_dssp -CTSC----------------CHHHHHHHHTT--T-SEEEE---
T ss_pred eeecc----------------cCHHHHHHHHhhcCCCEEEEChh
Confidence 33332 35677788888 7889987764
No 158
>PLN02306 hydroxypyruvate reductase
Probab=93.98 E-value=0.21 Score=55.69 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=64.2
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHH-HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCC-Cc
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP-AV 437 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP-~v 437 (679)
..|.+++|.|||.|.+|..+|+.|. ..|+ ++..+|...- ....+ .. ... | ..+..... .+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~~--~~~~~-~~---~~~---~--------~~l~~~~~~~~ 222 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQS--TRLEK-FV---TAY---G--------QFLKANGEQPV 222 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCCc--hhhhh-hh---hhh---c--------ccccccccccc
Confidence 4689999999999999999999986 7887 5667775210 00000 00 000 0 00000000 00
Q ss_pred EEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe-CCChHHHHHHHHHHHhc---CCeEEEEe
Q 005745 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL-TDTRESRWLPTLLCANT---NKITITAA 506 (679)
Q Consensus 438 ~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~-tDs~esR~lin~~~~~~---~kp~I~aa 506 (679)
.+ .....++++++++|+|+.+ --+.++|.+++.-..+. +..+||.+
T Consensus 223 ~~-----------------------~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 223 TW-----------------------KRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred cc-----------------------cccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 00 0124688999999999984 44788999998765543 44577765
No 159
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.4 Score=48.90 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=29.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67889999997 8999999999999997 5666654
No 160
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.37 Score=49.96 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=29.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
|+++.++|.|+ ||+|.++|+.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999987 6899999999999996 68787753
No 161
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.95 E-value=0.16 Score=56.55 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=41.4
Q ss_pred ChhhhhhhhhhhhhhhhhhhcCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 333 DPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 333 dp~~la~~~~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.....+|...-+=+.+.|.. + ..|++++|.|||+|.+|..+|+.|.+.|+. +..+|.
T Consensus 91 na~aVAE~~~~~lL~l~r~~-----g-~~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 91 NAIAVVEYVFSSLLMLAERD-----G-FSLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CchHHHHHHHHHHHHHhccC-----C-CCcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 34456676666544444431 1 358999999999999999999999999984 445553
No 162
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.95 E-value=0.24 Score=53.99 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=32.0
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~ 177 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDA 177 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46899999999999999999999999996 6777775
No 163
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.94 E-value=0.22 Score=53.95 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCC-EEEEEeC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg-~ItlVD~ 396 (679)
..||.|||+|.+|+.+|..|+..|.. +|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 45999999999999999999999984 7999986
No 164
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.88 E-value=0.44 Score=48.26 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=28.3
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678999998 59999999999999986 5666554
No 165
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.86 E-value=0.38 Score=48.39 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.2
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999998 69999999999999996 67777664
No 166
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.38 Score=49.02 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=29.3
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999986 7999999999999997 5777665
No 167
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.51 Score=47.51 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=28.2
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.|+ |++|..+|+.|+..|.. +.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence 56889999986 89999999999999964 555543
No 168
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.75 E-value=0.15 Score=52.96 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=63.2
Q ss_pred hcCCeEEEE-cCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 362 LSSRKCLLL-GAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 362 L~~~kVlIv-GaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
++++.++++ ||||+|-.+++.|+.-|+..+.+.|+ .+. -.+...|+++||.+++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En---------~~a~akL~ai~p~~~v~ 58 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EEN---------PEAIAKLQAINPSVSVI 58 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhC---------HHHHHHHhccCCCceEE
Confidence 467888877 79999999999999999999998665 111 23455799999999999
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT 482 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t 482 (679)
-+..++.+ ..+.+...+..-.-+...|++|+..
T Consensus 59 F~~~DVt~---------~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 59 FIKCDVTN---------RGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEecccc---------HHHHHHHHHHHHHHhCceEEEEccc
Confidence 99987721 1122233344444556779988743
No 169
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.71 E-value=0.34 Score=52.26 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=26.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.||.|||+|..|+.+|..|++.|. +++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 479999999999999999999984 5777665
No 170
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.70 E-value=0.29 Score=52.48 Aligned_cols=30 Identities=37% Similarity=0.620 Sum_probs=27.5
Q ss_pred EEEEcCChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 367 CLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
|.|||+|.+|+.+|..|+..|+ .+|+++|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5799999999999999999997 57999997
No 171
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.69 E-value=0.5 Score=48.90 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=30.7
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999986 8999999999999998 67777763
No 172
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.68 E-value=0.37 Score=53.38 Aligned_cols=112 Identities=11% Similarity=0.179 Sum_probs=69.2
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCC------CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHh--hC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER--IF 434 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GV------g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~--in 434 (679)
...||.|||+|.=|+++|..|+..|. .++++...+ +++ .++.- ++.+++ .|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~---------------~~~--~~~~~----~~~in~~~~N 68 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLE---------------EIV--EGEKL----SDIINTKHEN 68 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEec---------------ccc--cchHH----HHHHHhcCCC
Confidence 34689999999999999999999874 355555332 111 02222 222332 12
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH----hcCCeEEEEeeCcc
Q 005745 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA----NTNKITITAALGFD 510 (679)
Q Consensus 435 P~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~----~~~kp~I~aalG~~ 510 (679)
+. ..||..+.+ ... -..++.+.++++|+||.++-+...|..+..+.. ..+.++|+++-|++
T Consensus 69 ~~----------ylp~~~Lp~----ni~-~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 69 VK----------YLPGIKLPD----NIV-AVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred cc----------cCCCCcCCC----ceE-EecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 10 112222221 011 123556788999999999999999998888854 23457888866664
No 173
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.68 E-value=0.37 Score=50.78 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=25.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWG--VRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~G--Vg~ItlVD~D 397 (679)
.||.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998864 4444555653
No 174
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.67 E-value=0.095 Score=55.53 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=28.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCC
Confidence 479999999999999999999995 68888875
No 175
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.67 E-value=0.52 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGV 388 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GV 388 (679)
..||.+||+|..|..+++.|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4589999999999999999999983
No 176
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.64 E-value=0.26 Score=46.67 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=58.8
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
+.|+|.| .||+|-.+++.|++.|-.++.+++.+ + -..+.+.+.+.++..+ .++..+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~~--~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAPG--AKITFIE 58 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHTT--SEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----cccccccccccccccc--ccccccc
Confidence 4688887 78999999999999999999998874 1 1346666677777544 6777776
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.++ + +.++.+.-.+.+.+.....|++|.+..-..
T Consensus 59 ~D~-------~--~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 59 CDL-------S--DPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp SET-------T--SHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred ccc-------c--cccccccccccccccccccccccccccccc
Confidence 554 1 111112222223333347788888766433
No 177
>PLN02427 UDP-apiose/xylose synthase
Probab=93.64 E-value=0.47 Score=51.99 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=32.3
Q ss_pred hhHHhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 357 ~gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++-+.++..||+|.|+ |-+|+++++.|+..|--+++.+|.
T Consensus 7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 3446788889999985 999999999999985346777775
No 178
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.63 E-value=0.35 Score=55.01 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=66.4
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|++++|+|||.|.++..=++.|...|. +||+|-.+ +. +++ .. +.+ .. +++
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~------------~~-~~~--------~~----l~~-~~--~i~ 59 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALA------------FI-PQF--------TA----WAD-AG--MLT 59 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC------------CC-HHH--------HH----HHh-CC--CEE
Confidence 5789999999999999999999999995 78887442 11 111 11 111 11 222
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
-+..+ . ..+.++++++||.|||+.+.-..+...|.+.++++-.+
T Consensus 60 ~~~~~-------------------~--~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 60 LVEGP-------------------F--DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EEeCC-------------------C--ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 22211 1 13456899999999999998888999999999876444
No 179
>PLN02494 adenosylhomocysteinase
Probab=93.61 E-value=0.32 Score=55.41 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=31.9
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+.+++|+|+|+|.+|..+|+.+.+.|+ +++++|.|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~d 286 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEID 286 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 789999999999999999999999999 68887753
No 180
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.60 E-value=0.47 Score=51.91 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=31.8
Q ss_pred hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEe
Q 005745 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD 395 (679)
+...|++++|.|||+|..|..+|++|...|+ ++.+.+
T Consensus 11 ~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 11 DLSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred ChhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 4678999999999999999999999999998 454444
No 181
>PLN02602 lactate dehydrogenase
Probab=93.58 E-value=0.27 Score=54.09 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999998 57999986
No 182
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.57 E-value=0.32 Score=52.05 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3689999999999999999999997 47888876
No 183
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.53 Score=47.57 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=28.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
|++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 57889999987 8999999999999995 5777664
No 184
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.56 E-value=0.15 Score=49.61 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=60.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~ 444 (679)
++|.+||+|..|+.+|++|++.|. ++++.|.+.-....+. + .|-..++..++.+++- ++-+..+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~--------~---~g~~~~~s~~e~~~~~--dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALA--------E---AGAEVADSPAEAAEQA--DVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHH--------H---TTEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhH--------H---hhhhhhhhhhhHhhcc--cceEeeccc
Confidence 589999999999999999999996 4777775321111111 1 1222233334444432 344433321
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhcCCeEEEEe
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~~~kp~I~aa 506 (679)
. .+.++.....+ +...+..-++|||++- +++.-..+.+.+..++..+|++.
T Consensus 68 ~----------~~v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 68 D----------DAVEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp H----------HHHHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred c----------hhhhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 0 00011111111 2233344567777655 44555667778888899899875
No 185
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.54 E-value=0.67 Score=49.03 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=58.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC---CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV---g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
.+|.|||+|.+|..+++.|...|. .++.++|.+. ..|.+. +.+.++.+.+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~---------------------~~~~~~----l~~~~~~~~~-- 54 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK---------------------NEHFNQ----LYDKYPTVEL-- 54 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc---------------------HHHHHH----HHHHcCCeEE--
Confidence 369999999999999999999883 4566655421 012221 2222222221
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEEeeC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALG 508 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~--~~~kp~I~aalG 508 (679)
..+..+.++++|+||.|+-....+-++..+.. ..++.+|+..-|
T Consensus 55 -----------------------~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aG 100 (277)
T PRK06928 55 -----------------------ADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAG 100 (277)
T ss_pred -----------------------eCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 11223556789999999987777776666643 345677776433
No 186
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.53 E-value=0.21 Score=54.36 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=59.9
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHH-HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~ 438 (679)
..|.+++|.|||.|.+|..||+.|. ..|+. +...|. +...+ .. .+. ++
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~-------------~~~~~----------~~----~~~--~~- 189 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNAR-------------RHHKE----------AE----ERF--NA- 189 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECC-------------CCchh----------hH----Hhc--Cc-
Confidence 4699999999999999999999997 77763 444443 00000 00 000 11
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHh---cCCeEEEEee
Q 005745 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCAN---TNKITITAAL 507 (679)
Q Consensus 439 v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~esR~lin~~~~~---~~kp~I~aal 507 (679)
....++++++++|+|+.++ -+.++|.+++.-..+ .+..+||.+-
T Consensus 190 -------------------------~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 190 -------------------------RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGR 237 (323)
T ss_pred -------------------------EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCC
Confidence 0124678899999988855 478899988765443 3445677653
No 187
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.51 E-value=0.65 Score=41.81 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=57.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeccc
Q 005745 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAI 446 (679)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~I 446 (679)
|+|+|.|.+|-.+++.|.. +-.+++++|.|. .+++.+ .+.. +. .+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~----------------------~~~~~~----~~~~--~~--~i~gd- 48 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDP----------------------ERVEEL----REEG--VE--VIYGD- 48 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSH----------------------HHHHHH----HHTT--SE--EEES--
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCc----------------------HHHHHH----Hhcc--cc--ccccc-
Confidence 6899999999999999999 547899998842 122222 2222 22 33221
Q ss_pred CCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHhc
Q 005745 447 PMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANT 498 (679)
Q Consensus 447 pm~gh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~lin~~~~~~ 498 (679)
+ .+.+.+.+. ++++|.|+.++++.+.-..+...++..
T Consensus 49 -----~----------~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 49 -----A----------TDPEVLERAGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp -----T----------TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred -----c----------hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 1 234444443 688999999999998888888888763
No 188
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.48 E-value=0.25 Score=53.82 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
.++..||+|+|+ |.+|+.+|..|+..|. .+|.|+|-
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 356679999999 9999999999998776 47999998
No 189
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.37 Score=54.65 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=31.8
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|+|+|++|..+|+.|...|. +++++|..
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899999999999999999999997 59999864
No 190
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.38 E-value=0.063 Score=57.17 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|..|+.+|..|+..|. .++++|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 489999999999999999999996 68998864
No 191
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.38 E-value=0.44 Score=48.61 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.4
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467999987 6899999999999996 67787753
No 192
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.38 E-value=0.53 Score=53.84 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=68.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc--HHHHHHHHHHhh-CCCcEEEE
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF--KAMAAVKSLERI-FPAVAAEG 441 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~--KAeaaae~L~~i-nP~v~v~~ 441 (679)
.+|.|||+|..|..+|++|++.|. ++++.|.+.=....+.... .. .|.. -+...++.++.+ .|++-+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~----~~---~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA----KE---GNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh----hh---cCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999997 6888887432211111000 00 0100 112223333332 35544443
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHhcCCeEEEEe
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~lin~~~~~~~kp~I~aa 506 (679)
+. ||.++ ....+.+...++.-|+|||++-+. .++... ..+..+|+-+++++
T Consensus 74 v~-----~~~~v--------~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~fldap 126 (470)
T PTZ00142 74 IK-----AGEAV--------DETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGILYLGMG 126 (470)
T ss_pred eC-----ChHHH--------HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCeEEcCC
Confidence 32 12111 112244555667789999988763 344444 56677899999874
No 193
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.35 E-value=0.44 Score=51.68 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.3
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITL 393 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~Itl 393 (679)
|++++|.|||+|..|..+|++|...|+. +++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv 31 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIV 31 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEE
Confidence 5789999999999999999999999973 444
No 194
>PLN03139 formate dehydrogenase; Provisional
Probab=93.34 E-value=0.29 Score=54.57 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 469999999999999999999999999985 555664
No 195
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.41 Score=49.46 Aligned_cols=37 Identities=8% Similarity=0.246 Sum_probs=31.3
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.++++++|+|.|+ |++|..+++.|+..|.. +.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3578899999987 89999999999999964 7777763
No 196
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.24 E-value=0.48 Score=50.23 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=25.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHc--CCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~--GVg~ItlVD~ 396 (679)
+..||.|||+|.+|..+++.|... |+.-..++|.
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr 40 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR 40 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 347899999999999999999874 4433335554
No 197
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.23 E-value=0.32 Score=54.55 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=61.7
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..|.+++|.|||.|.+|..+|+.|.+.|. ++..+|... .... + .+
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------------~~~~---~----------------~~-- 191 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------------KLPL---G----------------NA-- 191 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------------cccc---C----------------Cc--
Confidence 46999999999999999999999999997 566666310 0000 0 00
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhc---CCeEEEEe
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAA 506 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~~---~kp~I~aa 506 (679)
. ....++++++.+|+|+.+.- +.++|.+++.-.... +..+||.+
T Consensus 192 ~-----------------------~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 192 R-----------------------QVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred e-----------------------ecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 0 12356789999999888655 677999988654443 34566654
No 198
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.22 E-value=0.23 Score=55.30 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=40.7
Q ss_pred ChhhhhhhhhhhhhhhhhhhcCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 333 DPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 333 dp~~la~~~~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
....++|.+.-+=+.+.|. . ...|++++|.|||+|.+|..+|+.|.+.|+. +..+|.
T Consensus 91 na~aVAE~v~~~lL~l~r~-----~-g~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 91 NARGVVDYVLGSLLTLAER-----E-GVDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred ChHHHHHHHHHHHHHHhcc-----c-CCCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 3444666666543334442 1 1468999999999999999999999999984 455554
No 199
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.21 E-value=0.18 Score=42.96 Aligned_cols=31 Identities=26% Similarity=0.682 Sum_probs=28.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
||+|||+|-+|+++|..|+..| .++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEecc
Confidence 6999999999999999999999 588888874
No 200
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.20 E-value=1.1 Score=43.22 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=57.0
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 367 VlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
|+|+|+ |.+|..+++.|...| -+++.+= | ...|.+. .+.+++...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R------------~~~~~~~--------~~~~~~~~~d-- 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------R------------SPSKAED--------SPGVEIIQGD-- 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------S------------SGGGHHH--------CTTEEEEESC--
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------c------------Cchhccc--------ccccccceee--
Confidence 789998 999999999999999 5555522 2 2223333 5556654433
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH----HHHHHHHHHHhcCCe
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE----SRWLPTLLCANTNKI 501 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e----sR~lin~~~~~~~kp 501 (679)
+ .+.+.+.+.++++|+||.+..... .-..+-.+|.+.+++
T Consensus 48 ~----------------~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 48 L----------------FDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp T----------------TCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred e----------------hhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 2 456788888999999999986322 122344455566654
No 201
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.19 E-value=0.56 Score=47.04 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=28.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.+++|+|+|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999986 89999999999999874 766654
No 202
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.5 Score=48.19 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=32.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|.|+ |++|..+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467899999986 7999999999999999888888764
No 203
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.44 Score=48.45 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=29.2
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56889999986 7999999999999996 5777665
No 204
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.08 E-value=0.39 Score=48.48 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=28.5
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
|++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 46889999985 8899999999999986 5666665
No 205
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.06 E-value=0.75 Score=49.51 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
||.|||+|.+|+.++..|++.| .++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence 6999999999999999999998 45677765
No 206
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.04 E-value=0.53 Score=49.21 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=28.9
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.| .||+|..+|+.|++.|. ++.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6788899997 77999999999999997 4777664
No 207
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.02 E-value=0.38 Score=50.80 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
||+|+|+|++|+.+|..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999984 5777664
No 208
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.67 Score=47.43 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=30.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 57889999998 7999999999999998 88887763
No 209
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.00 E-value=0.46 Score=51.81 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=32.5
Q ss_pred hHHHhhccCCEEEEeCCChHHHHHHHHHHHh--cCCeEEEEeeCcc
Q 005745 467 RLTDLILSHDVIFLLTDTRESRWLPTLLCAN--TNKITITAALGFD 510 (679)
Q Consensus 467 ~l~~li~~~DvV~~~tDs~esR~lin~~~~~--~~kp~I~aalG~~ 510 (679)
++.+.++++|+||.++-+...+..+..+... .+.++|+..-|++
T Consensus 70 d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 70 DFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 3445678999999999999999988887653 3446777644543
No 210
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.97 E-value=0.14 Score=54.30 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++|+|+|+||.+..++..|+..|+.+|++++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999875
No 211
>PLN02240 UDP-glucose 4-epimerase
Probab=92.92 E-value=0.61 Score=49.97 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=29.3
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999986 9999999999999995 6777774
No 212
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.91 E-value=0.78 Score=42.32 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.6
Q ss_pred hhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEe--eCcc
Q 005745 471 LILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA--LGFD 510 (679)
Q Consensus 471 li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aa--lG~~ 510 (679)
.++++|+||.|+++..++-+...+ .+.|+.+|+.+ +.++
T Consensus 63 ~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 63 ELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp HHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTS
T ss_pred HhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCC
Confidence 348999999999998887766666 88889999863 4443
No 213
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.81 E-value=0.33 Score=45.87 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=24.9
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
|+|+|+|++|+.+|-.|.+.|. ++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEc
Confidence 7899999999999999999774 4777665
No 214
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.80 E-value=0.37 Score=52.29 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.0
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467889999998 8999999999999997 4777765
No 215
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.79 E-value=0.44 Score=48.72 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=30.9
Q ss_pred HhhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
-++++++++|.| .|++|..+|+.|+..|. +++++|.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 457889999998 59999999999999997 6777765
No 216
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.76 E-value=0.74 Score=46.18 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=27.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD 395 (679)
|.+++++|+|+ |++|..+++.|+..|...+.+++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~ 37 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYD 37 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 66789999986 89999999999999976444324
No 217
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.75 E-value=0.18 Score=49.76 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=61.7
Q ss_pred HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 005745 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~ 438 (679)
...|.+++|.|+|+|.+|..+|+.|...|+ ++..+|... +... ...+. .
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~-----------------------~~~~---~~~~~--~-- 79 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP-----------------------KPEE---GADEF--G-- 79 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC-----------------------HHHH---HHHHT--T--
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC-----------------------Chhh---hcccc--c--
Confidence 468999999999999999999999999998 777777621 1111 01110 0
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHhc---CCeEEEEe
Q 005745 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAA 506 (679)
Q Consensus 439 v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~esR~lin~~~~~~---~kp~I~aa 506 (679)
.....++++++++|+|+.+.- +.+++.+++.-..+. +..+||.+
T Consensus 80 ------------------------~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 80 ------------------------VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp ------------------------EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred ------------------------ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 123466789999999998766 667888777655443 33566654
No 218
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.68 E-value=1.1 Score=50.21 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=63.7
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
+...+|+|+|+|.+|..+++.|...|. .++++|.| ..+.+.+ ++..+++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~----------------------~~~~~~~----~~~~~~~~~-- 279 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERD----------------------PERAEEL----AEELPNTLV-- 279 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC----------------------HHHHHHH----HHHCCCCeE--
Confidence 567899999999999999999999886 57888762 1122222 222334432
Q ss_pred EecccCCCCCCCCCccccccccChhhHH-HhhccCCEEEEeCCChHHHHHHHHHHHhcCCe
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLT-DLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~-~li~~~DvV~~~tDs~esR~lin~~~~~~~kp 501 (679)
+..+. .+.+.+. ..++++|.|+.++++.+.-.++..+|+..+.+
T Consensus 280 i~gd~----------------~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 280 LHGDG----------------TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred EECCC----------------CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 22111 1333342 34678999999999888877777788877654
No 219
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.67 E-value=0.76 Score=46.45 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~I 391 (679)
+.+++|+|.|+ |++|..+++.|+..|...+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45678999976 7999999999999997544
No 220
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.62 E-value=0.17 Score=54.79 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=33.2
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.++.||.|||+|.+|..+|..|+..|+.+|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999974
No 221
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.60 E-value=0.78 Score=46.93 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.0
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57999988 9999999999999996 7877765
No 222
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.56 E-value=0.66 Score=51.64 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=61.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCc-EEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV-AAE 440 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~--GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v-~v~ 440 (679)
.++++|+|+|.-+-.-++.++.. +++++.+.|. ...|+++.++++.+.++++ .++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~~~~~~~v~ 212 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAETYPQITNVE 212 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcCCCceEE
Confidence 57999999999999999999873 4888888665 4568999999998877654 354
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
.. +..++.++++|+|+.||-+.+
T Consensus 213 ~~-----------------------~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 213 VV-----------------------DSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred Ee-----------------------CCHHHHHcCCCEEEEccCCCC
Confidence 43 245677899999999997644
No 223
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.51 E-value=0.69 Score=50.79 Aligned_cols=111 Identities=14% Similarity=0.276 Sum_probs=67.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC-------CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV-------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-------g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~ 438 (679)
||.|||+|.-|+.+|..|+..|. .++++...+. ++ . +. ...+.+++...+.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~-~-~~----~~~~~in~~~~n~~ 59 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EI-E-GR----NLTEIINTTHENVK 59 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------cc-C-CH----HHHHHHHhcCCCcc
Confidence 68999999999999999998873 3555543311 11 0 11 12333333221111
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--hcCCeEEEEeeCcc
Q 005745 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGFD 510 (679)
Q Consensus 439 v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~--~~~kp~I~aalG~~ 510 (679)
. .||-.+.+ ... -..++++.++++|+||.++-+...|..+..+.. ..++++|+++-|++
T Consensus 60 y--------lpgi~Lp~----~i~-at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 60 Y--------LPGIKLPA----NLV-AVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred c--------cCCCcCCC----CeE-EECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 0 11111110 001 124567888999999999999999998888753 34678998876664
No 224
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.47 E-value=0.48 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=29.7
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
|++++|+|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999997 7999999999999997 6777665
No 225
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.42 E-value=0.4 Score=51.19 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=65.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhh-CCCcEEEEEec
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~i-nP~v~v~~~~~ 444 (679)
+|.+||+|..|..+|++|+..|. +++++|.+.-....+ .+. |..-+....+.+... .+++-+...+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~---g~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEE---GATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHC---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence 79999999999999999999995 578888753111111 111 222222223333332 35555555431
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC-hHHHHHHHHHHHhcCCeEEEEe
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT-RESRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs-~esR~lin~~~~~~~kp~I~aa 506 (679)
. +. .....+.+...+..-++||+++-. .+.-..+...+...++-++++.
T Consensus 70 ~-----~~--------~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 70 G-----EI--------TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred C-----cH--------HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 0 00 011112333445556889998543 3333335577888899999873
No 226
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=92.41 E-value=0.72 Score=49.20 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.5
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.+++|+|.|+ ||+|.++++.|++.| -++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 45778999975 899999999999999 46777765
No 227
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.36 E-value=0.84 Score=47.65 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=25.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++.++|.|+||+|..+|+.|+ .| .++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeC
Confidence 457888899999999999996 68 57877775
No 228
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.34 E-value=1 Score=45.30 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=30.3
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++++|.| .|++|..+++.|+.-|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899997 56999999999999998 78888753
No 229
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.33 E-value=0.25 Score=53.80 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=28.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|..|+.+|..++..| -.++++|.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 58999999999999999999999 566777863
No 230
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.32 E-value=0.4 Score=51.37 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCC
Confidence 379999999999999999999996 78898875
No 231
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.6 Score=48.07 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=31.3
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++++|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999987 9999999999999997 78887764
No 232
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.26 E-value=0.89 Score=52.23 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=28.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.||.|||+|..|+.+|..|++.|. .++++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence 479999999999999999999997 7888887
No 233
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.23 E-value=0.61 Score=50.37 Aligned_cols=30 Identities=40% Similarity=0.589 Sum_probs=26.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEe
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD 395 (679)
.||+|+|+|++||..+..|++.| ..++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 38999999999999999999999 7777643
No 234
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.18 E-value=1.2 Score=49.93 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=57.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
+|+|+|+|.+|..+++.|...|. .++++|.+ ..+++.+.+. .++. .+..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~----------------------~~~~~~~~~~-----~~~~--~~~gd 51 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTD----------------------EERLRRLQDR-----LDVR--TVVGN 51 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECC----------------------HHHHHHHHhh-----cCEE--EEEeC
Confidence 79999999999999999999886 56777762 1133332221 1222 22211
Q ss_pred cCCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHhc
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANT 498 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~lin~~~~~~ 498 (679)
. .+...+.+. ++++|.||.++++.+.-..+...++..
T Consensus 52 ~----------------~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 52 G----------------SSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred C----------------CCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 1 234455555 788999999998877776666677765
No 235
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.18 E-value=0.6 Score=47.06 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=30.2
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 466889999986 9999999999999997 57776653
No 236
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.16 E-value=0.58 Score=50.63 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.8
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ ||+|..+++.|++.|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467789999986 8999999999999996 6777764
No 237
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.8 Score=46.53 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.5
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.+++|+|.|+ |++|..+|+.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999986 7999999999999997 6888774
No 238
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.53 Score=49.70 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=30.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|.|+ ||+|..+|+.|+..|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999986 8999999999999997 67777653
No 239
>PRK08589 short chain dehydrogenase; Validated
Probab=92.12 E-value=0.7 Score=47.97 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=29.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++++++|.|+ ||+|.++|+.|+..|. ++.++|.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r 38 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDI 38 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999987 8999999999999995 5666654
No 240
>PRK06196 oxidoreductase; Provisional
Probab=92.11 E-value=0.78 Score=48.82 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.6
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ ||+|.++++.|+..|. ++++++.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R 58 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPAR 58 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999987 8999999999999996 5777665
No 241
>PLN02253 xanthoxin dehydrogenase
Probab=92.08 E-value=1 Score=46.58 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=29.7
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.++++++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 4577889999975 7899999999999996 5777664
No 242
>PLN00106 malate dehydrogenase
Probab=92.07 E-value=0.4 Score=52.26 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.7
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCC-CEEEEEeCCc
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GV-g~ItlVD~D~ 398 (679)
...||+|+|+ |.+|+.+|..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3569999999 9999999999998887 5899999855
No 243
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.06 E-value=1.1 Score=45.73 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=28.2
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
|.+++++|.|+ |++|..+++.|++.|. ++.++|.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 56889999985 7899999999999996 6666553
No 244
>PRK05717 oxidoreductase; Validated
Probab=92.06 E-value=0.72 Score=47.12 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=29.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|.|+ |++|..+|+.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 56789999985 8999999999999995 77888754
No 245
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.03 E-value=0.69 Score=41.75 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=56.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcC--CCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 366 KCLLLGAGTLGCQVARMLMAWG--VRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~G--Vg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
||+|||+|..|...+..+...+ +.-..++|. ...+++.+++. + ++. .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------------------~~~~~~~~~~~----~-~~~--~~- 51 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------------------DPERAEAFAEK----Y-GIP--VY- 51 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------------------SHHHHHHHHHH----T-TSE--EE-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------------------CHHHHHHHHHH----h-ccc--ch-
Confidence 7999999999999999999883 322234444 23344444222 2 222 22
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~esR~lin~~~~~~~kp~I~ 504 (679)
.+.+++++ +.|+|+.+|.+ ..+.-+...|.++|++++-
T Consensus 52 ----------------------~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 52 ----------------------TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp ----------------------SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred ----------------------hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence 22445555 78999999987 5577777888889987664
No 246
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.00 E-value=0.29 Score=46.35 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=49.1
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
-...||.|||+|-+|..+++.|.+.|. +|.-| | .++ ...++++.+..+...+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~--------srs--~~sa~~a~~~~~~~~~~- 60 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------Y--------SRS--PASAERAAAFIGAGAIL- 60 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------S--------SCH--H-HHHHHHC--TT-----
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------E--------eCC--ccccccccccccccccc-
Confidence 346689999999999999999999995 33321 1 121 22333444433333221
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHh----cCCeEEE
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN----TNKITIT 504 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~----~~kp~I~ 504 (679)
++.++++.+|+||.++-...-.-....++.. .++.+++
T Consensus 61 -------------------------~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvH 102 (127)
T PF10727_consen 61 -------------------------DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVH 102 (127)
T ss_dssp --------------------------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEE
T ss_pred -------------------------ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEE
Confidence 2235678899999988666666556666544 3444444
No 247
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.00 E-value=0.72 Score=47.70 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.2
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++++|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4567899885 8999999999999996 46666653
No 248
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.99 E-value=0.52 Score=50.80 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=28.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.||+|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 68888864
No 249
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.73 Score=46.60 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=30.2
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356789999997 9999999999999995 67776653
No 250
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.93 E-value=0.8 Score=45.72 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+.+++|+|.|+ |++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 34678999986 89999999999999986 7777764
No 251
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=91.91 E-value=0.99 Score=47.28 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=55.1
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCC---CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GV---g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
.+.||.|||+|.+|+.+++.|...|+ .++.++|.+.- .. + +
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~--------------~~---~-------------------~ 45 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK--------------NT---P-------------------F 45 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh--------------cC---C-------------------e
Confidence 35689999999999999999999873 23555443210 00 0 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHh-cCCeEEEEe
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITAA 506 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~-~~kp~I~aa 506 (679)
... ....+.++++|+||.|+-....+-++..+... ..+.+|+..
T Consensus 46 ~~~-----------------------~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~ 90 (260)
T PTZ00431 46 VYL-----------------------QSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISIC 90 (260)
T ss_pred EEe-----------------------CChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEe
Confidence 111 11224457889999999998888888776532 245666643
No 252
>PRK06046 alanine dehydrogenase; Validated
Probab=91.87 E-value=0.75 Score=49.93 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=55.0
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La-~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
..+|.|+|+|+.|...++.|. .-+++++.++|. ...|++.+++.+++.+ ++.+..+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~-~~~v~~~ 185 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVV-GCDVTVA 185 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhc-CceEEEe
Confidence 578999999999999999998 457888888776 3456777777776543 2333332
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
++.++.++ +|+|+.||-+.+
T Consensus 186 -----------------------~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 186 -----------------------EDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred -----------------------CCHHHHhh-CCEEEEecCCCC
Confidence 12345555 999999998743
No 253
>PRK06270 homoserine dehydrogenase; Provisional
Probab=91.86 E-value=1 Score=49.22 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=20.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHc
Q 005745 365 RKCLLLGAGTLGCQVARMLMAW 386 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~ 386 (679)
.+|.|+|+|++|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999999765
No 254
>PRK06057 short chain dehydrogenase; Provisional
Probab=91.81 E-value=0.59 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.0
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++++|+|+|+ |++|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 478899999998 9999999999999995 57777654
No 255
>PRK05855 short chain dehydrogenase; Validated
Probab=91.72 E-value=0.82 Score=52.06 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 359 LDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 359 q~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
...+++.+++|+|+ ||+|..+|+.|+..|.. +.+++.
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35678889999986 99999999999999985 777664
No 256
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.72 E-value=0.42 Score=52.11 Aligned_cols=93 Identities=28% Similarity=0.297 Sum_probs=60.4
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
..+.++++.|+|.|.+|..||+.+.+-|. +|...|. .|+ ++.+. +.+ .
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~--------~~~-------------~~~~~------~~~----~ 189 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDR--------SPN-------------PEAEK------ELG----A 189 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECC--------CCC-------------hHHHh------hcC----c
Confidence 57899999999999999999999994443 2232222 221 11110 000 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEE-eCCChHHHHHHHHHHHhcCC---eEEEEeeC
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFL-LTDTRESRWLPTLLCANTNK---ITITAALG 508 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~-~tDs~esR~lin~~~~~~~k---p~I~aalG 508 (679)
.| .+ ++++++++|+|.. |-.+.++|.++|.--.+.-| .+||.+-|
T Consensus 190 -~y----------------------~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG 238 (324)
T COG1052 190 -RY----------------------VD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG 238 (324)
T ss_pred -ee----------------------cc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence 11 12 7889999998776 66789999999986655444 46676543
No 257
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.70 E-value=1.1 Score=49.33 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=26.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+|.|||+|.+|..+|+.|.+.|. .+.++|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence 479999999999999999999996 5566665
No 258
>PRK08303 short chain dehydrogenase; Provisional
Probab=91.67 E-value=0.96 Score=48.37 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=30.6
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.|+++.++|.|+ +|+|.++|+.|++.|. ++.+++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 367889999988 5899999999999996 67777764
No 259
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.63 E-value=0.98 Score=45.27 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56889999987 6799999999999997 6777665
No 260
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.62 E-value=0.84 Score=48.34 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+|.|||+|.+|..+|+.|++.|. +++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999995 56676653
No 261
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.60 E-value=0.79 Score=49.42 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.||.|||+|.+|+.+|..|+..|.+++.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999997
No 262
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.56 E-value=1.2 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.1
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|+|.| .|++|..+++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 5789998 59999999999999996 57777763
No 263
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.53 E-value=1.4 Score=47.36 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=30.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|.+++..+|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999999999999988765
No 264
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.47 E-value=1.1 Score=45.09 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=25.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~I 391 (679)
+++++|+|.|+ |++|..+|+.|+..|...+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~ 33 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVA 33 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 56789999985 9999999999999997543
No 265
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.47 E-value=1.2 Score=45.35 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=30.3
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
+.+++|+|.|+ |++|..+|+.|+..|. ++.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 56789999986 9999999999999996 577777643
No 266
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.45 E-value=1.2 Score=47.17 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++|+|.|+ |++|+.+++.|+..|. ++++++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r 37 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVR 37 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEc
Confidence 578999985 9999999999999996 4555544
No 267
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.45 E-value=1.1 Score=44.62 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=30.7
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++++++|.|+ |++|..+++.|+..|.+ +.++|.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 356789999986 99999999999999975 7887774
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.44 E-value=0.8 Score=54.29 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=31.4
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-.+++|+|||+|..|-.+|..|++.|.. ++++|.+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 3578999999999999999999999975 8999864
No 269
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.41 E-value=1.1 Score=45.74 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=30.2
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++++|.|+ |++|..+++.|+.-|.. +++++.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 468899999986 89999999999999974 777774
No 270
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.41 E-value=1.2 Score=48.60 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=58.2
Q ss_pred CeEEEEcCChHHHHHHHHHHH--------cCC--CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhC
Q 005745 365 RKCLLLGAGTLGCQVARMLMA--------WGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~--------~GV--g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~in 434 (679)
.+|.|+|+|++|+.+++.|.. .|+ +=..+.|.+. .+|.++.+ . .+.+.+..++-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gi---d---~~~l~~~~~~~~ 67 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDI---D---LREAKEVKENFG 67 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCC---C---hHHHHHhhhccC
Confidence 589999999999999999977 673 3444556431 22333322 1 122222222211
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccChhhHHHhh--ccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI--LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 435 P~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li--~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
. +..+..+. ...+ ...++++ .++|+||+++.....+.+ -..+...++++|.+
T Consensus 68 ~---~~~~~~~~--------------~~~~-~~~~ell~~~~~DVvVd~t~~~~a~~~-~~~al~~G~~VVta 121 (336)
T PRK08374 68 K---LSNWGNDY--------------EVYN-FSPEEIVEEIDADIVVDVTNDKNAHEW-HLEALKEGKSVVTS 121 (336)
T ss_pred c---hhhccccc--------------cccC-CCHHHHHhcCCCCEEEECCCcHHHHHH-HHHHHhhCCcEEEC
Confidence 1 01111000 0000 1334555 378999999976555544 44556788999876
No 271
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.32 E-value=1.2 Score=45.77 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.7
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++++++|.|+ |++|..+++.|+..|.. +.++|.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 467889999986 79999999999999975 666553
No 272
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.28 E-value=0.97 Score=46.21 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 57899975 8999999999999996 5666554
No 273
>PRK13529 malate dehydrogenase; Provisional
Probab=91.26 E-value=1.2 Score=51.93 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=71.8
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHH----cCC------CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHH
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMA----WGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~----~GV------g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~ 429 (679)
.+|++.||+++|+|+.|..+|+.|+. .|+ ++|.++|..=+=.. .| .|+ ...|..-|..
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~--~r------~~l---~~~k~~fa~~- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTD--DM------PDL---LDFQKPYARK- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeC--CC------Ccc---hHHHHHHhhh-
Confidence 58889999999999999999999997 599 69999998643111 11 122 2334333322
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccC--CEEEEeCCC--hHHHHHHHHHHHhcCCeEEEE
Q 005745 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSH--DVIFLLTDT--RESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 430 L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~--DvV~~~tDs--~esR~lin~~~~~~~kp~I~a 505 (679)
.++ +. .... ......+.+.++.. |++|.++-- .=+.-++..++.....|+|.+
T Consensus 359 ---~~~-~~--~~~~-----------------~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 359 ---REE-LA--DWDT-----------------EGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred ---ccc-cc--cccc-----------------ccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 111 00 0000 01223577788877 999988762 335667888888888888865
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.24 E-value=1.1 Score=48.94 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=62.2
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
+|+|+|+|.+|.-++..+...|..+|.++|.+ ..|.+.|++... ..+.....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~----------------------~~Rl~~A~~~~g-----~~~~~~~~- 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS----------------------PERLELAKEAGG-----ADVVVNPS- 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC----------------------HHHHHHHHHhCC-----CeEeecCc-
Confidence 89999999999999999999999999999862 224444443221 11111100
Q ss_pred cCCCCCCCCCccccccccChhhHHHhh--ccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLI--LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li--~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
.........++- .++|+||+|+.+..+......+++..|..++-+
T Consensus 223 ---------------~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 223 ---------------EDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred ---------------cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 001122222333 359999999998876666667777777655543
No 275
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.24 E-value=0.56 Score=50.86 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.6
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCC-CEEEEEeCC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNG 397 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GV-g~ItlVD~D 397 (679)
||.|||+ |.+|+.+|..|+.-|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 8999999 9999999999998887 689999985
No 276
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.22 E-value=0.91 Score=46.21 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.3
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 477899999986 7899999999999997 78888874
No 277
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.21 E-value=1.9 Score=44.31 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=60.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHH-HHHHHHHHhhCCCcEEEEEe
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA-MAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KA-eaaae~L~~inP~v~v~~~~ 443 (679)
.+++|+|.|-+|+.+|+.|+..| -+++|--. ..+|+ +++++.+. |. +++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~----------------------r~~~~~~a~a~~l~---~~--i~~-- 51 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSS----------------------RGPKALAAAAAALG---PL--ITG-- 51 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecC----------------------CChhHHHHHHHhhc---cc--ccc--
Confidence 47899999999999999999999 33333100 23343 33333332 22 222
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhc-CCeEEEEeeC
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITAALG 508 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~-~kp~I~aalG 508 (679)
-...+..+.+|+||++.--....-.+..+.... +|.+|++...
T Consensus 52 ----------------------~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 52 ----------------------GSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred ----------------------CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 223455678999999998777777777777655 5999997543
No 278
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.20 E-value=0.98 Score=46.20 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 478899999986 79999999999999975 5555553
No 279
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.18 E-value=1 Score=45.01 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=24.7
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRK 390 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ 390 (679)
++.++|+|+|+ |++|..+++.|+.-|..-
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 45678999975 999999999999999854
No 280
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.17 E-value=0.9 Score=46.13 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.0
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.| .|++|.++++.|++.|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 36778899997 67999999999999996 7888776
No 281
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.15 E-value=1.2 Score=47.06 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=58.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 365 RKCLLLG-AGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
.||+|+| +|..|..+++.+.. -++.-..++|.. |.... ..|+ | + +....+ ..+..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-----~~~~~----~~~~---~--------~-~~~~~~-~gv~~- 58 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-----GSSLQ----GTDA---G--------E-LAGIGK-VGVPV- 58 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----Ccccc----CCCH---H--------H-hcCcCc-CCcee-
Confidence 4899999 59999999999986 466666666631 11000 0011 1 0 111000 00111
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEEeeCc
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGF 509 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~aalG~ 509 (679)
..+++++....|+||++| +++.-.-.-..|.++|+++|.+..|+
T Consensus 59 ----------------------~~d~~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 59 ----------------------TDDLEAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred ----------------------eCCHHHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 112233334689999998 55666667778888999988765455
No 282
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.14 E-value=1 Score=45.95 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=30.8
Q ss_pred hhcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.|++++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 3577899999995 799999999999996 78888764
No 283
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.10 E-value=1 Score=48.55 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|.|+ |.+|+++++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 8899999999999995 57777764
No 284
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.07 E-value=1.4 Score=44.39 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=25.7
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~It 392 (679)
++++.|+|.|+ |++|..+|+.|+..|...+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 45678899985 99999999999999975443
No 285
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.06 E-value=1.4 Score=44.82 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=27.5
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999987 8999999999999995 6788775
No 286
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.04 E-value=1.2 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=29.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999996 9999999999999997 5777765
No 287
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.98 E-value=0.51 Score=50.42 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=62.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH---HHHHHHHHHhhCCCcEEEEE
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK---AMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K---Aeaaae~L~~inP~v~v~~~ 442 (679)
+|.|||+|..|+.+|++|++.|. ++++.|.+.-...-+..+ |... .+.+.+.+. .+++-+..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-----------g~~~~~s~~~~~~~~~--~~dvIi~~v 67 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-----------RTTGVANLRELSQRLS--APRVVWVMV 67 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----------CCcccCCHHHHHhhcC--CCCEEEEEc
Confidence 69999999999999999999994 567777653211111110 1111 112222221 245544443
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHhcCCeEEEEe
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--esR~lin~~~~~~~kp~I~aa 506 (679)
+.. . ...-.+.+...+..-++||+++... .++.+. ..+...+..++++.
T Consensus 68 p~~------~--------~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~-~~~~~~g~~~vda~ 118 (298)
T TIGR00872 68 PHG------I--------VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRY-KLLKEKGIHLLDCG 118 (298)
T ss_pred Cch------H--------HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHH-HHHHhcCCeEEecC
Confidence 310 0 0111233444455668999987763 445443 45567888888874
No 288
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.98 E-value=1.6 Score=44.84 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.0
Q ss_pred hcCCeEEEEcCC-hHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|.|++ ++|..+++.|+.-|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 678899999865 799999999999998 78887763
No 289
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.97 E-value=0.77 Score=49.67 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
..++.|+|+|.-|-.-++.|+. .++.+|.+.|. ...+++..++++++ . ++.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence 4589999999999999998865 67899999775 34588999999998 4 6666654
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
++.++.++++|+|+.||-+.+
T Consensus 184 -----------------------~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 184 -----------------------DSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp -----------------------SSHHHHHTTSSEEEE----SS
T ss_pred -----------------------cchhhhcccCCEEEEccCCCC
Confidence 245678899999999998854
No 290
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.95 E-value=2.4 Score=46.64 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=58.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
+.+|+|+|+||||...++...++| -+++.+|. +..|.+.|++.-.. .-+..-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~~lGAd----~~i~~~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAKKLGAD----HVINSS- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHHHhCCc----EEEEcC-
Confidence 789999999999999999999999 88887775 55677666544232 222211
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEE
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I 503 (679)
+.+..+.+-+.+|+|+++.- ..+--..-.+.+..|..++
T Consensus 219 --------------------~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 219 --------------------DSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred --------------------CchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEE
Confidence 22223333334999999988 4443333344455555443
No 291
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=90.94 E-value=1.2 Score=48.13 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=59.0
Q ss_pred cCCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..++++|+|+|.-|-.-++.++. ..+++|.+.|. ...|++..++++++.. +++++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~f~~~~~~~~-~~~v~~ 172 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR----------------------NFDHARAFAERFSKEF-GVDIRP 172 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEE
Confidence 36899999999999998888875 36677777554 4558888888888743 344443
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
. +..++.+.++|+|+.+|-+.+
T Consensus 173 ~-----------------------~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 173 V-----------------------DNAEAALRDADTITSITNSDT 194 (301)
T ss_pred e-----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 3 346778899999999999864
No 292
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.91 E-value=1.5 Score=44.24 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=28.4
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 366789999997 8999999999999996 4555443
No 293
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=90.91 E-value=1.1 Score=46.58 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=22.3
Q ss_pred eEEEEcCChHHHHHHHHHHHc--CCCEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMAW--GVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~--GVg~ItlVD~ 396 (679)
+|.|||||++|..+.+.+-.- ++....+.|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~ 34 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR 34 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecC
Confidence 799999999999998766532 2444555454
No 294
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=90.88 E-value=1.7 Score=46.23 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=49.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
+..++++|-|| +|+|-++|+.|++-| .++.||-. -+.|-+.+++.|.+.+ +++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~ 59 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVAR----------------------REDKLEALAKELEDKT-GVEVE 59 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence 56789999996 799999999999999 45555443 3558899999999988 88888
Q ss_pred EEeccc
Q 005745 441 GVVMAI 446 (679)
Q Consensus 441 ~~~~~I 446 (679)
.++.++
T Consensus 60 vi~~DL 65 (265)
T COG0300 60 VIPADL 65 (265)
T ss_pred EEECcC
Confidence 887765
No 295
>PLN02852 ferredoxin-NADP+ reductase
Probab=90.87 E-value=0.98 Score=52.01 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=34.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHHH--cCCCEEEEEeCCccCccCCCcC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMA--WGVRKITLLDNGRVAMSNPLRQ 407 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~--~GVg~ItlVD~D~Ve~sNl~RQ 407 (679)
..+||+|||+|.-|.++|+.|++ .| .+++|+|.... +-.+.|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p~-pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLPT-PFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCCC-CcceEee
Confidence 46789999999999999999997 46 48999998763 3445553
No 296
>PRK12744 short chain dehydrogenase; Provisional
Probab=90.83 E-value=1.8 Score=44.17 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.6
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEE
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~Itl 393 (679)
.|++++|+|.| .|++|..+|+.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 46778999997 6799999999999999875544
No 297
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.76 E-value=0.98 Score=46.69 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=29.1
Q ss_pred hcCCeEEEEcC---ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++.++|.|+ +|+|.++|+.|++.|. ++.+++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 56889999998 5999999999999997 5767654
No 298
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.75 E-value=0.88 Score=47.64 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.4
Q ss_pred EEEEcC-ChHHHHHHHHHHHcC--C-CEEEEEeCC
Q 005745 367 CLLLGA-GTLGCQVARMLMAWG--V-RKITLLDNG 397 (679)
Q Consensus 367 VlIvGa-GgLGs~VA~~La~~G--V-g~ItlVD~D 397 (679)
|.|||+ |..|..+|..|+..| . .+|.|+|.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~ 35 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDID 35 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCC
Confidence 579999 999999999999999 4 689999863
No 299
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.72 E-value=1.6 Score=48.75 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=32.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLR 406 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~R 406 (679)
+|.|||+|-+|..+|..|+..|. +++.+|.+.-....+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence 69999999999999999999997 68888886544444444
No 300
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.70 E-value=1.8 Score=46.02 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=29.7
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
-.+++++++|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 4577899999986 6899999999999997 5666664
No 301
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=90.70 E-value=0.94 Score=46.53 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.1
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEE
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlV 394 (679)
..+++++|+|.|+ ||+|.++|+.|+..|.. ++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 3477889999986 89999999999999974 5554
No 302
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.68 E-value=1.7 Score=51.51 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
+.+|+|+|+|-.|..+++.|...|+ +++++|.|.- +++.+++ .+.++ +.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~----------------------~v~~~~~------~g~~v--~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD----------------------HIETLRK------FGMKV--FY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH----------------------HHHHHHh------cCCeE--EE
Confidence 5799999999999999999999997 5788888532 3333322 13333 22
Q ss_pred cccCCCCCCCCCccccccccChhhHHH-hhccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTN 499 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~esR~lin~~~~~~~ 499 (679)
.+. .+.+-+++ -++++|+|+.++|+.+....+...++++.
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 449 GDA----------------TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred EeC----------------CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 211 13333433 35789999999999998888888888764
No 303
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.68 E-value=1.3 Score=45.74 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.8
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+.|+++||+|.|.|.+|..+|+.|...|.+-+.+.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 56789999999999999999999999998888898875
No 304
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=90.66 E-value=1.9 Score=46.40 Aligned_cols=108 Identities=12% Similarity=0.193 Sum_probs=64.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCCccCccCC--CcCccCCcccccC--CCCcHHHHHHHHHHhhCCCcE
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSNP--LRQSLYTLDDCLN--GGDFKAMAAVKSLERIFPAVA 438 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D~Ve~sNl--~RQ~L~~~~Dv~~--~Gk~KAeaaae~L~~inP~v~ 438 (679)
.+|.|||.||-||.++..|.+.|+. .+..+|.|.-.++.. .+-.++..+.... .|. ..+..++..
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~-~~~~g~~~a-------- 71 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGG-DPEVGRKAA-------- 71 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCC-CHHHHHHHH--------
Confidence 3799999999999999999999986 455667776443332 2222332221100 011 011111111
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe------CCChHHHHHHHHHHHhcCCeEEEE
Q 005745 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL------TDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 439 v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~------tDs~esR~lin~~~~~~~kp~I~a 505 (679)
....+.+.+.++++|.||.+ |.+-.+.. +.++++.++++++..
T Consensus 72 -----------------------~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~-ia~~a~e~g~~~~~v 120 (304)
T cd02201 72 -----------------------EESREEIKEALEGADMVFITAGMGGGTGTGAAPV-IAKIAKEMGALTVAV 120 (304)
T ss_pred -----------------------HHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHH-HHHHHHHcCCCEEEE
Confidence 11234566777889998876 44555555 678888888876654
No 305
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.62 E-value=3.8 Score=41.43 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=58.3
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEecc
Q 005745 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (679)
Q Consensus 367 VlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~~ 445 (679)
|+|+|+ |.+|..+++.|...|..-..++-+ . ....++.|+. .++++...+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~------------------------~-~~~~~~~l~~--~g~~vv~~d-- 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRD------------------------P-SSDRAQQLQA--LGAEVVEAD-- 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESS------------------------S-HHHHHHHHHH--TTTEEEES---
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEec------------------------c-chhhhhhhhc--ccceEeecc--
Confidence 789997 999999999999966443222211 0 1112334444 356654332
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC---ChHH--HHHHHHHHHhcCCeEE
Q 005745 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD---TRES--RWLPTLLCANTNKITI 503 (679)
Q Consensus 446 Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD---s~es--R~lin~~~~~~~kp~I 503 (679)
..+.+.+.+.++++|.||.++. ..+. ..-+-++|.+.|+..+
T Consensus 52 ----------------~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 52 ----------------YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp ----------------TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred ----------------cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 2467888999999999999999 3333 3445567777777655
No 306
>PRK12746 short chain dehydrogenase; Provisional
Probab=90.62 E-value=1.4 Score=44.67 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.8
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCE
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ 390 (679)
++++++|+|.| .|++|.++|+.|+.-|...
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v 33 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALV 33 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46788999998 6899999999999998643
No 307
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.60 E-value=0.37 Score=49.54 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=35.8
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
..|++++|+|.|.|.+|..+|+.|...|.+.+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 457899999999999999999999999999999999754
No 308
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=90.55 E-value=0.97 Score=46.41 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=29.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++++|.|+ ||+|..+++.|+..|. ++.++|..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56889999986 6899999999999996 57777754
No 309
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.38 E-value=1.6 Score=46.05 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=27.5
Q ss_pred cCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++|+|.| +|.+|+++++.|+..|. +++.++.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 357899999 59999999999999996 45555543
No 310
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.37 E-value=0.56 Score=50.86 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.7
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCC-CEEEEEeCCc
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GV-g~ItlVD~D~ 398 (679)
||.|+|+ |.+|+.+|..|+.-|+ .+|.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 7999999 9999999999999887 6799999754
No 311
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.36 E-value=0.96 Score=56.04 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=58.2
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcH--HHHHHHHHHhhCCCcEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK--AMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~K--Aeaaae~L~~inP~v~v~ 440 (679)
.++||+|||+|-.|..+|..|++.|. ++|++|... .+.=+.-|...+. -.+| ++.-.+.+++. ++++.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~---rlp~~vi~~~i~~l~~~--Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEF---RLPNQLIDDVVEKIKLL--GGRFV 374 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCC---cChHHHHHHHHHHHHhh--cCeEE
Confidence 58999999999999999999999997 688888642 2333222332222 2233 22223344443 56554
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCCh
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTR 485 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~ 485 (679)
.-.. + |. + -.++++.+ +||.||.+|...
T Consensus 375 ~n~~-v---G~------------d-it~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 375 KNFV-V---GK------------T-ATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred EeEE-e---cc------------E-EeHHHhccccCCEEEEeCCCC
Confidence 3221 1 11 1 12344544 699999999985
No 312
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.29 E-value=0.81 Score=49.94 Aligned_cols=106 Identities=20% Similarity=0.314 Sum_probs=66.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~ 444 (679)
.+|.|+|+|+=|+.+|..|++.| ..+++...| +++ .+.|++-+ .+.+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~---------------~~~-----------~~~i~~~~--~N~~yLp- 51 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRD---------------EEI-----------VAEINETR--ENPKYLP- 51 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecC---------------HHH-----------HHHHHhcC--cCccccC-
Confidence 58999999999999999999999 444443221 111 11122210 1111111
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHH--HhcCCeEEEEeeCcc
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC--ANTNKITITAALGFD 510 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~--~~~~kp~I~aalG~~ 510 (679)
.|.-|. ...-..++.+.++++|+|+.++-+...|-.+.++. ...+.++++++-|++
T Consensus 52 ~i~lp~----------~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 52 GILLPP----------NLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred CccCCc----------ccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 111110 11235677888899999999999999998888763 356678888876664
No 313
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.29 E-value=1.5 Score=44.96 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.9
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.++|+|.| .|++|..+++.|+..|. +++++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35788887 78999999999999997 78888764
No 314
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.26 E-value=2.3 Score=46.02 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.2
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3679999999999999999999999988888765
No 315
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=90.23 E-value=1.6 Score=52.03 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=28.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
|++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 45688999986 8999999999999997 7778775
No 316
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.23 E-value=1.2 Score=47.59 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=28.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 367 VlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
|.|||+|.+|+.+|..|+..|..+++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886699999986
No 317
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=2.1 Score=48.21 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=58.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~ 444 (679)
.||+|+|+|+.|..+|+.|.+.|. .+++.|..... +.....+.|.+. ++.+..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~---------------------~~~~~~~~l~~~--gi~~~~--- 53 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP---------------------ELLERQQELEQE--GITVKL--- 53 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch---------------------hhHHHHHHHHHc--CCEEEE---
Confidence 479999999999999999999996 78888864321 111112334433 344421
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEE
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~ 504 (679)
||. .+.+.....+.++|+||-...-.....++ ..+++.++|++.
T Consensus 54 -----g~~----------~~~~~~~~~~~~~d~vv~s~gi~~~~~~~-~~a~~~~i~v~~ 97 (459)
T PRK02705 54 -----GKP----------LELESFQPWLDQPDLVVVSPGIPWDHPTL-VELRERGIEVIG 97 (459)
T ss_pred -----CCc----------cchhhhhHHhhcCCEEEECCCCCCCCHHH-HHHHHcCCcEEE
Confidence 111 12223445567889888865544443333 344677888876
No 318
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.15 E-value=2.3 Score=44.19 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=30.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++++|.|+ |++|..+|+.|+..|. ++.++|..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 56789999985 8999999999999997 67887764
No 319
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.14 E-value=0.85 Score=47.07 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.4
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.|+ ||+|..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r 37 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDL 37 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence 56788999987 89999999999999974 666664
No 320
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.14 E-value=1 Score=47.72 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
||.|||+|.+|+.+|+.|++.|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999995 67777653
No 321
>PRK12862 malic enzyme; Reviewed
Probab=90.11 E-value=0.89 Score=54.99 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=36.4
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCCcc
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRV 399 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D~V 399 (679)
++|++.||++.|+|+.|..+|+.|+..|+. +|.++|..=+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 678999999999999999999999999995 9999997543
No 322
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=90.11 E-value=1.5 Score=47.72 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
.+++.|||+|..|-.-++.|.. ..+.++.+.|. ...|++..++.+++. ++++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~--g~~v~~~ 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDY--EVPVRAA 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhh--CCcEEEe
Confidence 5789999999999998887754 33556666544 456788888888754 3333332
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (679)
+..++.++++|+|+.||-+.
T Consensus 184 -----------------------~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 184 -----------------------TDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred -----------------------CCHHHHhccCCEEEEecCCC
Confidence 23456778999999999774
No 323
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.09 E-value=2.1 Score=43.16 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.++++|.|+ |++|..+++.|+.-|. +++++|.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999986 9999999999999997 7888776
No 324
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.08 E-value=1.9 Score=46.68 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.0
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
-.+.+|+|.| +|.+|+.+++.|+..|. ++++++.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567899999 58899999999999986 4554443
No 325
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.06 E-value=1.4 Score=45.28 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=29.8
Q ss_pred HhhcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEe
Q 005745 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 360 ~kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD 395 (679)
.+|++++|+|.|++ |+|..+|+.|+..|. ++.+.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 36889999999995 899999999999997 466555
No 326
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.05 E-value=1.8 Score=48.98 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=26.3
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+|+||| +|.+|..+|+.|...|. +++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 799997 89999999999999995 6777775
No 327
>PTZ00188 adrenodoxin reductase; Provisional
Probab=90.05 E-value=1.5 Score=50.57 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=58.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHH-HcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhh--CCCcEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI--FPAVAA 439 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La-~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~i--nP~v~v 439 (679)
+.+||+|||+|--|+++|+.|+ ..|+ +++|+|..-.-.. +.|.-.- . -.++.....+.+.++ ++.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgG-LvR~GVa-P------dh~~~k~v~~~f~~~~~~~~v~f 108 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYG-LIRYGVA-P------DHIHVKNTYKTFDPVFLSPNYRF 108 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCcc-EEEEeCC-C------CCccHHHHHHHHHHHHhhCCeEE
Confidence 4679999999999999999876 4564 5999998665442 2332111 1 123333444444332 355555
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh
Q 005745 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (679)
Q Consensus 440 ~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (679)
.+ ...| |. .-.++++.+.||.||.++...
T Consensus 109 ~g-nv~V---G~-------------Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 109 FG-NVHV---GV-------------DLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred Ee-eeEe---cC-------------ccCHHHHHhcCCEEEEEcCCC
Confidence 43 2222 11 112455566899999999976
No 328
>PRK06720 hypothetical protein; Provisional
Probab=90.05 E-value=1.4 Score=43.40 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=29.6
Q ss_pred hcCCeEEEEcCC-hHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++.++|.|++ |+|..+++.|+..| .++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 678899999975 69999999999999 567777764
No 329
>PRK08324 short chain dehydrogenase; Validated
Probab=90.01 E-value=1.4 Score=52.48 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=29.5
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.+++|+|.| +|++|..+++.|+..|. ++.++|.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 4567899999 59999999999999997 7888875
No 330
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.97 E-value=1.5 Score=51.90 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.5
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 58999999999999999999999998 589988653
No 331
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.94 E-value=1.1 Score=52.01 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=31.5
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-.+++|+|||+|..|-.+|..|++.|. +++++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 458899999999999999999999998 59999964
No 332
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.92 E-value=1.2 Score=46.53 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=30.0
Q ss_pred hcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecc
Confidence 678899999996 799999999999996 57777653
No 333
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=89.91 E-value=1.6 Score=47.95 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=61.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEE-EEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKIT-LLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~It-lVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
.||+|+|+ |.+|..+++.|...-.-++. +++... .. |+. +.+.+|.+....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~--------~~~~~~~l~~~~- 53 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKP--------VSEVHPHLRGLV- 53 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCC--------hHHhCccccccC-
Confidence 37999999 99999999999976434444 545531 11 332 112233221100
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE--eeCcc
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGFD 510 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a--alG~~ 510 (679)
...+ +....+++.+++|+||.|+.+..++-+...+ .+.|+.+|+. +..++
T Consensus 54 ~~~~-----------------~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 54 DLNL-----------------EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSADFRLK 105 (346)
T ss_pred Ccee-----------------ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCChhhhcC
Confidence 0001 1112234446899999999999888777765 4578999985 35554
No 334
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.90 E-value=1.6 Score=47.48 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++|||+|||.+|-.....+-+.|..+|.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 5889999999999999999999999999999886
No 335
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.87 E-value=2.5 Score=42.88 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD 395 (679)
+++|+|.|+ |++|..+++.|+..|.. +++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 457999986 79999999999999964 44443
No 336
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.82 E-value=0.39 Score=51.50 Aligned_cols=33 Identities=33% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
..||+|+|+|++|+.+|-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999995 78888874
No 337
>PRK09072 short chain dehydrogenase; Provisional
Probab=89.82 E-value=1.7 Score=44.65 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=29.8
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++++|.| +|++|..+++.|+..|. ++++++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 5678999998 49999999999999996 58888753
No 338
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=89.73 E-value=0.41 Score=55.48 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.2
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|+|+||+|..++..|+..|+ +|++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8999864
No 339
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=89.70 E-value=1.6 Score=44.61 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.9
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.++++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence 3577889999987 8899999999999996 67777753
No 340
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.63 E-value=1.8 Score=46.79 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=30.7
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++.+||+|.|+ |=+|+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567799999996 9999999999999985 67777753
No 341
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=89.55 E-value=1.5 Score=48.96 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCC------EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhC-C
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVR------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF-P 435 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg------~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~in-P 435 (679)
-.||.|+|+ |.+|+.+|..|+.-|+- .|.|+|.|. .+.|++.-+.-|..-. |
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~--------------------~~~~a~g~a~DL~d~a~~ 103 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER--------------------SKEALEGVAMELEDSLYP 103 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc--------------------cchhhhHHHHHHHHhhhh
Confidence 469999999 99999999999999984 366666533 3445665565555543 3
Q ss_pred CcE-EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 005745 436 AVA-AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (679)
Q Consensus 436 ~v~-v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (679)
... +... . ...+.++++|+||.+...
T Consensus 104 ~~~~v~i~----------------------~-~~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 104 LLREVSIG----------------------I-DPYEVFEDADWALLIGAK 130 (387)
T ss_pred hcCceEEe----------------------c-CCHHHhCCCCEEEECCCC
Confidence 321 1111 1 113456899999997765
No 342
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.54 E-value=1.5 Score=49.87 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=30.6
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++|+|||+|..|..+|..|++.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 578999999999999999999999985 8888764
No 343
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.52 E-value=1.4 Score=49.25 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=30.8
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|+|+|++|-.+|+.|++.|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999996 67887753
No 344
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=89.46 E-value=0.39 Score=53.70 Aligned_cols=62 Identities=27% Similarity=0.394 Sum_probs=46.8
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHH
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSL 430 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L 430 (679)
++|+..||++.|+|+-|+.+++.|...|++ +|.++|.-=+-+. .|.-+ +. ++.|.+.+.+..
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~--~r~~~----~~---~~~k~~~a~~~~ 258 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYD--GREDL----TM---NQKKYAKAIEDT 258 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccC--CCccc----cc---chHHHHHHHhhh
Confidence 689999999999999999999999999998 9999998644222 12111 12 667777665433
No 345
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=89.45 E-value=1.6 Score=50.89 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=69.3
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHH-----cCC------CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHH
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMA-----WGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~-----~GV------g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae 428 (679)
.+|++.||+++|+|+.|..+|+.|+. .|+ ++|.++|.+=+-..+ |. +++ ...|..-|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r~-----~~l---~~~k~~fa~~ 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--RK-----DSL---QPFKKPFAHD 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--CC-----ccC---hHHHHHHHhh
Confidence 68889999999999999999999998 477 799999986432111 11 012 2334433321
Q ss_pred HHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhcc--CCEEEEeCC--ChHHHHHHHHHHHhcCCeEEE
Q 005745 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILS--HDVIFLLTD--TRESRWLPTLLCANTNKITIT 504 (679)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~--~DvV~~~tD--s~esR~lin~~~~~~~kp~I~ 504 (679)
. . ....+.+.++. .|++|.++- ..=+.-++..++.....|+|.
T Consensus 387 -----~--------~--------------------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 387 -----H--------E--------------------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred -----c--------c--------------------cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 0 0 11356677777 788888775 233566778888778888886
Q ss_pred E
Q 005745 505 A 505 (679)
Q Consensus 505 a 505 (679)
+
T Consensus 434 a 434 (581)
T PLN03129 434 A 434 (581)
T ss_pred E
Confidence 5
No 346
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=89.45 E-value=2.2 Score=47.14 Aligned_cols=109 Identities=15% Similarity=0.260 Sum_probs=65.6
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEE--EeCCccCc--cCCCcCccCCcccccC---CCCcHHHHHHHHHHhhCC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITL--LDNGRVAM--SNPLRQSLYTLDDCLN---GGDFKAMAAVKSLERIFP 435 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~Itl--VD~D~Ve~--sNl~RQ~L~~~~Dv~~---~Gk~KAeaaae~L~~inP 435 (679)
.+.+|.|||.||-||.++..|.+.|+....+ +|.|.-.+ +...+-.+...+--.. +|.+. ..++..
T Consensus 16 ~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~--~G~~~a----- 88 (349)
T TIGR00065 16 NKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPE--IGRKAA----- 88 (349)
T ss_pred cCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHH--HHHHHH-----
Confidence 4568999999999999999999999875544 78776333 3333333332221100 01111 111111
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe------CCChHHHHHHHHHHHhcCCeEEEE
Q 005745 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL------TDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 436 ~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~------tDs~esR~lin~~~~~~~kp~I~a 505 (679)
....+.+.+.++++|.||.+ |.+-.+- ++.++++.++++.+..
T Consensus 89 --------------------------ee~~d~Ir~~le~~D~vfI~aglGGGTGSG~ap-via~~ake~~~l~vai 137 (349)
T TIGR00065 89 --------------------------EESRDEIRKLLEGADMVFITAGMGGGTGTGAAP-VVAKIAKELGALTVAV 137 (349)
T ss_pred --------------------------HHHHHHHHHHHhCCCEEEEEEeccCccchhHHH-HHHHHHHHcCCCEEEE
Confidence 11234566677899988875 3344444 6778888888877654
No 347
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=89.43 E-value=2.2 Score=43.16 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 4688888 58999999999999997 5777764
No 348
>PRK07677 short chain dehydrogenase; Provisional
Probab=89.40 E-value=1.6 Score=44.39 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467888876 6799999999999998 78888765
No 349
>PRK08703 short chain dehydrogenase; Provisional
Probab=89.38 E-value=1.6 Score=43.94 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=30.1
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.|++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~ 39 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARH 39 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 367789999986 8999999999999997 57777753
No 350
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=89.34 E-value=4.8 Score=43.35 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+|+|.|+ |-+|+++++.|+..|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999997 999999999999874246777764
No 351
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.28 E-value=0.55 Score=50.38 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=32.1
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.++||+|+|+|.+|..+++.|.+.|. +++++|.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r 183 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGAR 183 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 4578999999999999999999999997 8999876
No 352
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=89.25 E-value=0.62 Score=51.33 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=36.5
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHc-CCCEEEEEeCCccCccCCCcC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAW-GVRKITLLDNGRVAMSNPLRQ 407 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~-GVg~ItlVD~D~Ve~sNl~RQ 407 (679)
+...|+|||+|-+|+.+|..|++. |..+++++|.+.+-...-.|.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 456899999999999999999984 887999999987654433333
No 353
>PLN02650 dihydroflavonol-4-reductase
Probab=89.23 E-value=2.4 Score=45.70 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=26.7
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++|||.|+ |.+|+++++.|+..|. ++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 3568999986 9999999999999986 4555554
No 354
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.18 E-value=1.4 Score=45.20 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=29.4
Q ss_pred hhcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++.++|.|++ |+|..+|+.|++.|.. +.+++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence 3678899999985 9999999999999964 666654
No 355
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.11 E-value=0.68 Score=47.91 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=34.8
Q ss_pred hhHHhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 357 ~gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+.|.++++++++|.|+ ||+|..+|+.|+..|. ++.++|.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 5689999999999987 7899999999999996 67777764
No 356
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.07 E-value=2.6 Score=43.52 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 36888875 8999999999999997 4666654
No 357
>PRK07589 ornithine cyclodeaminase; Validated
Probab=89.06 E-value=1.9 Score=47.59 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=56.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
..+++|+|+|..+-.-++.+.. ..+.+|.++|. ...|++..++.+++ +++++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~--~~~~v~~~ 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAG--PGLRIVAC 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHh--cCCcEEEe
Confidence 5789999999999888876653 35677777644 45588888888876 24444432
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
+..++.++++|+|+.||-+.+
T Consensus 185 -----------------------~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 185 -----------------------RSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred -----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 346788899999999997654
No 358
>PRK07201 short chain dehydrogenase; Provisional
Probab=89.04 E-value=2 Score=50.25 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.7
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..+++++++|.|+ ||+|..+++.|++.|. ++.+++.
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r 403 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR 403 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3677889999986 8899999999999996 6777764
No 359
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=89.03 E-value=1.3 Score=45.35 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=29.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999986 7899999999999997 47777764
No 360
>PRK06523 short chain dehydrogenase; Provisional
Probab=88.95 E-value=1.4 Score=45.08 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=49.8
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v 439 (679)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.-. +......+-.-|+. ....++.+.+.+.+..+.+.+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~id~ 80 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLT--TAEGCAAVARAVLERLGGVDI 80 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCC--CHHHHHHHHHHHHHHcCCCCE
Confidence 477899999986 8999999999999997 58888876432 22222333345661 123345555566665555554
Q ss_pred EEE
Q 005745 440 EGV 442 (679)
Q Consensus 440 ~~~ 442 (679)
-.+
T Consensus 81 vi~ 83 (260)
T PRK06523 81 LVH 83 (260)
T ss_pred EEE
Confidence 443
No 361
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=88.90 E-value=2.7 Score=42.79 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.7
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+|+|.|+ |++|..+++.|+.-|. ++.++|.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 6899985 8999999999999996 5777765
No 362
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.77 E-value=1.6 Score=44.48 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=28.4
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.|++++++|.|+ |++|..+|+.|+..|.. +.+++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 367889999985 78999999999999975 455544
No 363
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.76 E-value=3.2 Score=45.21 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3679999999999999999888999988887764
No 364
>PLN02740 Alcohol dehydrogenase-like
Probab=88.61 E-value=3.8 Score=44.96 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|+|+|++|..++..+...|+++++.+|.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 4779999999999999999999999988888866
No 365
>PRK07775 short chain dehydrogenase; Provisional
Probab=88.58 E-value=3.5 Score=42.86 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=28.2
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+...+.|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r 42 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGF-PVALGAR 42 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 355678999985 9999999999999997 5666554
No 366
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.54 E-value=0.49 Score=50.62 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=32.4
Q ss_pred hhcCCeEEEEcCCh-HHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGg-LGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|+|+|+ +|.+++..|...|. ++|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 57899999999999 99999999999998 9999874
No 367
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=88.37 E-value=0.73 Score=48.49 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAM 401 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~ 401 (679)
.|+|||+|-.|+.+|..|++.|. +++|+|.+.+.-
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 999999995543
No 368
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=88.36 E-value=3.1 Score=41.96 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.7
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEE
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~I 391 (679)
+++++|+|.| .|++|..+|+.|+..|...+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~ 34 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVV 34 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 5678999997 78999999999999996543
No 369
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.34 E-value=1.8 Score=44.18 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=28.0
Q ss_pred hcCCeEEEEcCC-hHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.|++ |+|..+|+.|+..|.. +.+++.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r 37 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQ 37 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence 577899999865 6999999999999974 666654
No 370
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=88.32 E-value=1.8 Score=44.45 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+|+|.|+ ||+|..+|+.|+..|. ++.++|.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~ 33 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRN 33 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 6889875 7899999999999997 57777653
No 371
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.27 E-value=0.63 Score=51.31 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
++|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999995 799999886
No 372
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=88.24 E-value=3.9 Score=43.58 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=62.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC---CEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GV---g~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
.+|.+||+|..|..++.-|.+.|. .+|.+.|. ...|.. .+.+.++.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------------------~~e~~~----~l~~~~g~~-~-- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------------------SEEKRA----ALAAEYGVV-T-- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------------------CHHHHH----HHHHHcCCc-c--
Confidence 579999999999999999999994 56666544 111222 445545433 1
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHH-HhcCCeEEEEeeC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC-ANTNKITITAALG 508 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~-~~~~kp~I~aalG 508 (679)
..+..+.+.+.|+||+|.=.....-.+..+- ...++.+|+.+-|
T Consensus 53 -----------------------~~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISiaAG 97 (266)
T COG0345 53 -----------------------TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIAAG 97 (266)
T ss_pred -----------------------cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEeCC
Confidence 1233466788999999998866666666654 3567889986444
No 373
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.22 E-value=4.5 Score=43.13 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.1
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|.++++.+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3789999999999999999999999987777754
No 374
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.19 E-value=2.4 Score=42.82 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=25.4
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEE
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~I 391 (679)
|++++++|.| .|++|.++|+.|+..|..-+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv 33 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVV 33 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEE
Confidence 5678899998 67999999999999997543
No 375
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.17 E-value=3.2 Score=46.94 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 357899999999999999999999996 69999974
No 376
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.16 E-value=0.68 Score=49.13 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
++|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999997 799998743
No 377
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.14 E-value=0.69 Score=49.39 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.||.|||+|.+|+.+|..|+..|.+++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999997
No 378
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=88.12 E-value=2.2 Score=45.54 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.7
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++|+|.|+ +|+|..+|+.|+..|.-++.+++.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678899987 6899999999999996677777653
No 379
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.10 E-value=0.2 Score=60.11 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=29.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|..|+.+|..++..|. .++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCC
Confidence 579999999999999999999995 88899975
No 380
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=88.05 E-value=0.67 Score=50.11 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCcc
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~V 399 (679)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 3569999999999999999999995 7999998764
No 381
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=88.04 E-value=2.9 Score=42.84 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.5
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEe
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD 395 (679)
.+++++++|.| .|++|.++|+.|+..|.. +.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~ 38 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINY 38 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEe
Confidence 36789999997 578999999999999964 44443
No 382
>PRK08226 short chain dehydrogenase; Provisional
Probab=88.04 E-value=2.6 Score=43.08 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=30.3
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++.+++++|.| .|++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~ 39 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDIS 39 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCC
Confidence 46788999997 678999999999999974 7787754
No 383
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=88.04 E-value=3 Score=48.15 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=65.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCc---HHHHHHHHHHhh-CCCcEEE
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF---KAMAAVKSLERI-FPAVAAE 440 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~---KAeaaae~L~~i-nP~v~v~ 440 (679)
.+|.+||+|..|..+|++|++.|. ++++.|.+.=....+... .... |.. -+...++..+.+ .|++-+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 379999999999999999999996 677777631110000000 0000 110 112223333322 2555554
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh-H-HHHHHHHHHHhcCCeEEEEe
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR-E-SRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~-e-sR~lin~~~~~~~kp~I~aa 506 (679)
-+.. |-+ ...-.+.+...++.-|+|||++-+. + ++. ....+.++|+.+|+++
T Consensus 79 ~v~~-----~~a--------V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~-~~~~l~~~Gi~fldap 132 (493)
T PLN02350 79 LVKA-----GAP--------VDQTIKALSEYMEPGDCIIDGGNEWYENTER-RIKEAAEKGLLYLGMG 132 (493)
T ss_pred ECCC-----cHH--------HHHHHHHHHhhcCCCCEEEECCCCCHHHHHH-HHHHHHHcCCeEEeCC
Confidence 4321 000 0111133344456679999988763 3 444 4667788899999874
No 384
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.03 E-value=2.2 Score=45.74 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=62.4
Q ss_pred chhHHhhcCCeEEEEcCC-hHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhC
Q 005745 356 SLNLDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (679)
Q Consensus 356 ~~gq~kL~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~in 434 (679)
.+..++++++.|+|-||. |+|-++|+.|++.|.+-+.++= -..+-+..++.+++..
T Consensus 4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar-----------------------~~rrl~~v~~~l~~~~ 60 (282)
T KOG1205|consen 4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR-----------------------RARRLERVAEELRKLG 60 (282)
T ss_pred cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh-----------------------hhhhHHHHHHHHHHhC
Confidence 345689999999999984 8999999999999976555421 1234556666666666
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe
Q 005745 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481 (679)
Q Consensus 435 P~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~ 481 (679)
|.-++..+..++ .++++...-.+.+...+.+.|+.|+-
T Consensus 61 ~~~~v~~~~~Dv---------s~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 61 SLEKVLVLQLDV---------SDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred CcCccEEEeCcc---------CCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 554666776655 12333333334445556778887763
No 385
>PRK12827 short chain dehydrogenase; Provisional
Probab=88.00 E-value=2.4 Score=42.58 Aligned_cols=33 Identities=42% Similarity=0.634 Sum_probs=27.9
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEe
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD 395 (679)
+++++++|.| .|++|..+|+.|+..|.. +++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence 4678999998 589999999999999974 66666
No 386
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.98 E-value=1.6 Score=46.73 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=27.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+|.+||+|-.|..+|++|+..|. ++++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999996 57788764
No 387
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.95 E-value=4.2 Score=36.09 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=56.7
Q ss_pred cCCeEEEEcCChHHHHHHH-HHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVAR-MLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~-~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
+..+|+|+|+|++|..++. .....|.+-..++|.|. +.+ |+.- . ++.+
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~---G~~i-----------~-gipV-- 50 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKI---GKEI-----------G-GIPV-- 50 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTT---TSEE-----------T-TEEE--
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------Ccc---CcEE-----------C-CEEe--
Confidence 4679999999999998874 34567888888887631 222 3210 0 1111
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCC-eEEEEe
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNK-ITITAA 506 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~k-p~I~aa 506 (679)
+ ...+.+.+.+ +.|+.+.+.-...++-...+++. .++ .+++.+
T Consensus 51 ~--------------------~~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft 94 (96)
T PF02629_consen 51 Y--------------------GSMDELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFT 94 (96)
T ss_dssp E--------------------SSHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEES
T ss_pred e--------------------ccHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 1 1455666666 58999999987777777777766 554 444433
No 388
>PRK06114 short chain dehydrogenase; Provisional
Probab=87.92 E-value=3.5 Score=42.12 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.1
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++++|.| .||+|..+|+.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999997 56999999999999997 6666665
No 389
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.89 E-value=0.42 Score=55.09 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=28.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-+||.|||+|..|+.+|.+|+..|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4579999999999999999999994 67787764
No 390
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=87.86 E-value=0.81 Score=49.54 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=37.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQ 407 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ 407 (679)
...+|+|||+|-+|+.+|..|++.|. +++++|.+.+...+-.|.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~~ 46 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGRN 46 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhcc
Confidence 36789999999999999999999999 999999998865444443
No 391
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.85 E-value=4.3 Score=43.80 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=29.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|+|+|++|..++..+...|+ +++.+|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 6777776
No 392
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=87.83 E-value=1.2 Score=40.68 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=25.6
Q ss_pred hHHHhhc--cCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 467 RLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 467 ~l~~li~--~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
.++++++ ..|+||+|+.+....-+.. .+.++|+.+|.+
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~-~~L~~G~~VVt~ 89 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYE-KALERGKHVVTA 89 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHH-HHHHTTCEEEES
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHH-HHHHCCCeEEEE
Confidence 4455666 8999999988877654333 456789999876
No 393
>PRK06128 oxidoreductase; Provisional
Probab=87.82 E-value=2.1 Score=45.24 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=28.9
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD 395 (679)
.+|++++|+|.|+ |++|..+|+.|++.|.. +.+++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~ 86 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY 86 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence 4678899999986 89999999999999974 44443
No 394
>PRK09330 cell division protein FtsZ; Validated
Probab=87.81 E-value=4.1 Score=45.55 Aligned_cols=112 Identities=11% Similarity=0.154 Sum_probs=69.6
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCCc--cCccCCCcCccCCcccccC---CCCcHHHHHHHHHHh
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR--VAMSNPLRQSLYTLDDCLN---GGDFKAMAAVKSLER 432 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D~--Ve~sNl~RQ~L~~~~Dv~~---~Gk~KAeaaae~L~~ 432 (679)
......+|-|||+||-||.++.+|...|+. .+..++-|. ++.++..+-.+...+--.. +|.+ +..++...
T Consensus 9 ~~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~p--e~G~~aae- 85 (384)
T PRK09330 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANP--EVGRKAAE- 85 (384)
T ss_pred ccccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCH--HHHHHHHH-
Confidence 344567899999999999999999999986 445556655 3434433333332211100 1111 12221111
Q ss_pred hCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC------ChHHHHHHHHHHHhcCCeEEEE
Q 005745 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD------TRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 433 inP~v~v~~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD------s~esR~lin~~~~~~~kp~I~a 505 (679)
...+.+.+.++++|+||.+.. +-.+- ++.++++.++++.+..
T Consensus 86 ------------------------------e~~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaV 133 (384)
T PRK09330 86 ------------------------------ESREEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAV 133 (384)
T ss_pred ------------------------------HHHHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEE
Confidence 134566777889999987644 44455 7889999999887764
No 395
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=87.74 E-value=2.3 Score=45.60 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|.|+ |.+|+++++.|+..|. +++++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEec
Confidence 46789999996 8999999999999996 5666665
No 396
>PRK13018 cell division protein FtsZ; Provisional
Probab=87.73 E-value=4.3 Score=45.36 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=33.2
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCC--EEEEEeCCc
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg--~ItlVD~D~ 398 (679)
+...+.+|.|||+||-||.++.+|...|+. ++..++.|.
T Consensus 24 ~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 24 DDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 445677999999999999999999999987 556678776
No 397
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.65 E-value=0.74 Score=50.24 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.0
Q ss_pred HhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..|.+++|+|||+|.+|..+|+.|.+.|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46899999999999999999999999997 5677665
No 398
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.60 E-value=0.69 Score=52.72 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=33.8
Q ss_pred HHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 359 q~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
...+.+++|+|+|+|+.|..+|+.|.+.|. .+++.|..
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 345677899999999999999999999998 89999964
No 399
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=87.60 E-value=2.3 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=27.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999986 889999999999999877777764
No 400
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.59 E-value=4.8 Score=42.07 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=30.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5789999999999999999999999988888764
No 401
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.50 E-value=1.7 Score=47.38 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCC-C-----EEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GV-g-----~ItlVD~ 396 (679)
.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 58999999 9999999999999887 4 6888876
No 402
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=87.37 E-value=2.6 Score=42.98 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=28.0
Q ss_pred hhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEe
Q 005745 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 361 kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD 395 (679)
++++++|+|+| .|++|..+++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 46789999997 578999999999999974 55554
No 403
>CHL00194 ycf39 Ycf39; Provisional
Probab=87.36 E-value=5 Score=42.81 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=25.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
||+|.|+ |-+|+.+++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence 7999995 9999999999999995 5666554
No 404
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.35 E-value=1.7 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.8
Q ss_pred hhcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+...||+|+|+|.+|...+..+.++|.. ++++|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 56679999999999999999999999975 777666
No 405
>PRK05599 hypothetical protein; Provisional
Probab=87.35 E-value=2.6 Score=43.12 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=23.2
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.|+|.|+ +|+|-.+|+.|+. | .++.+++.
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r 31 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G-EDVVLAAR 31 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeC
Confidence 4788876 6899999999995 7 67777765
No 406
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=87.32 E-value=4 Score=40.69 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=26.5
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~Itl 393 (679)
+++++|+|.|+ |++|..+++.|+..|..-+.+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999985 899999999999999764444
No 407
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.31 E-value=0.84 Score=49.19 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=29.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC-CEEEEEeCC
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDNG 397 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GV-g~ItlVD~D 397 (679)
||.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 79999999999999999999996 789999974
No 408
>PRK06823 ornithine cyclodeaminase; Validated
Probab=87.27 E-value=2.7 Score=45.64 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=55.4
Q ss_pred cCCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..++++|+|+|..|-.-++.+.. ..+++|.+.|. ...|+++.++.+++. ++.++.
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~--~~~v~~ 182 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQAL--GFAVNT 182 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhc--CCcEEE
Confidence 36799999999999999988775 34566666544 455888888877754 233332
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (679)
. +..++.+.++|+|+.||-+.+
T Consensus 183 ~-----------------------~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 183 T-----------------------LDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred E-----------------------CCHHHHhcCCCEEEEecCCCC
Confidence 2 345677899999999998643
No 409
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=87.23 E-value=2.3 Score=44.60 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=26.9
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+|+|.|+ |.+|..+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6999985 9999999999999995 78888764
No 410
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.21 E-value=0.82 Score=49.08 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
..+|+|||+|++|+.+|..|++.| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 358999999999999999999999 6788887754
No 411
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.20 E-value=3.5 Score=43.73 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=24.7
Q ss_pred cCCeEEEEc-CChHHHHHHHHHHHcCCCEEE
Q 005745 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKIT 392 (679)
Q Consensus 363 ~~~kVlIvG-aGgLGs~VA~~La~~GVg~It 392 (679)
.+++|+|.| .|.+|+.+++.|+..|.. ++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~ 33 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VK 33 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EE
Confidence 467999998 599999999999999964 44
No 412
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.15 E-value=0.26 Score=59.10 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|+.|+.+|..++..|+ .++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence 479999999999999999999995 78888875
No 413
>PRK08264 short chain dehydrogenase; Validated
Probab=87.15 E-value=0.89 Score=45.68 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.5
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
+++++|+|.|+ |++|..+|+.|++.|..++.+++.+.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 56789999985 99999999999999997899988753
No 414
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.14 E-value=4.4 Score=40.84 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.9
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5799998 58999999999999997 78888774
No 415
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=87.13 E-value=2.4 Score=45.28 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=28.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+|.|||+|-.|..+|++|++.|. +++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999995 68888764
No 416
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.09 E-value=1.6 Score=44.95 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=30.6
Q ss_pred hhcCCeEEEEcC---ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++++++|.|+ +|+|.++|+.|++.|. ++.++|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence 367889999996 7999999999999997 57777754
No 417
>PRK09135 pteridine reductase; Provisional
Probab=87.09 E-value=3.6 Score=41.28 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=26.9
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 4578999985 8999999999999996 4555554
No 418
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.09 E-value=2.4 Score=42.96 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=32.2
Q ss_pred HhhcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 360 ~kL~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
+.+++++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence 567899999996 56799999999999997 778888753
No 419
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=87.07 E-value=2.8 Score=43.61 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=25.6
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
+|+|.|+ |.+|.++++.|+..|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899986 9999999999999873 46777664
No 420
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.95 E-value=9.1 Score=39.25 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=28.2
Q ss_pred hHHhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEE
Q 005745 358 NLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (679)
Q Consensus 358 gq~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~Itl 393 (679)
+.+..+.++|+|+|+ |.+|..+++.|+..|.. ++.
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 345667889999996 99999999999998854 443
No 421
>PRK05884 short chain dehydrogenase; Provisional
Probab=86.88 E-value=2.6 Score=42.55 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.5
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
|++|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6899987 8999999999999996 67777754
No 422
>PRK08643 acetoin reductase; Validated
Probab=86.86 E-value=5.5 Score=40.48 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=26.0
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46778886 67999999999999996 6777763
No 423
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.79 E-value=2.8 Score=43.15 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=31.0
Q ss_pred HhhcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 360 ~kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD~D 397 (679)
..++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~ 45 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLN 45 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 34678999999985 899999999999996 57777764
No 424
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.75 E-value=3.1 Score=46.22 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=27.9
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
-+..+|+|+|+ |.+|..+++.|+..|. +++.++.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 34568999986 9999999999999995 5666664
No 425
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=86.71 E-value=2.3 Score=47.39 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=59.5
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
..+||+|+|+ |.+|.++.+.|..--.-+|+++-.+ ... |+. +...+|.+....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~sa---G~~--------i~~~~~~l~~~~ 90 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKA---GQS--------FGSVFPHLITQD 90 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhc---CCC--------chhhCccccCcc
Confidence 3459999998 7899999999998866677776442 111 321 112222221110
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
. .++ .+.+ ..+ ++++|+||.|+.+..++-++..+ ..++.+|+.
T Consensus 91 ~-~~~----------------~~~~-~~~-~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDl 133 (381)
T PLN02968 91 L-PNL----------------VAVK-DAD-FSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDL 133 (381)
T ss_pred c-cce----------------ecCC-HHH-hcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEc
Confidence 0 000 0111 112 47899999999998888877775 367889975
No 426
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.70 E-value=2.5 Score=43.64 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=28.9
Q ss_pred HhhcCCeEEEEcC---ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 360 DILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 360 ~kL~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItlVD 395 (679)
++++++.++|.|+ +|+|.++|+.|++.|. ++.+.+
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~ 39 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTY 39 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEc
Confidence 4578899999994 5999999999999997 455554
No 427
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.57 E-value=2.9 Score=43.68 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=29.3
Q ss_pred hcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++.++|.|++ |+|..+|+.|++.|. ++.++|.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecC
Confidence 567899999997 899999999999996 5667664
No 428
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.55 E-value=2.8 Score=45.21 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=62.9
Q ss_pred hHHhhcCCeEEEEcCC-hHHHHHHHHHHHcCCCEEEEEeCCccCc---cCCCcC---ccCCcccccCCCCcHHHHHHHHH
Q 005745 358 NLDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNGRVAM---SNPLRQ---SLYTLDDCLNGGDFKAMAAVKSL 430 (679)
Q Consensus 358 gq~kL~~~kVlIvGaG-gLGs~VA~~La~~GVg~ItlVD~D~Ve~---sNl~RQ---~L~~~~Dv~~~Gk~KAeaaae~L 430 (679)
-++.+++..|||-|+| |||-.+|..+++.|. ++.+.|-..-.. -+..|+ .-+-.-|+. .+-.+...++++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis--~~eei~~~a~~V 108 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS--DREEIYRLAKKV 108 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCC--CHHHHHHHHHHH
Confidence 4678899999999876 899999999999998 888888543221 111221 112234551 234567777778
Q ss_pred HhhCCCcEEEEEecccCCCCCCCC
Q 005745 431 ERIFPAVAAEGVVMAIPMPGHPVP 454 (679)
Q Consensus 431 ~~inP~v~v~~~~~~Ipm~gh~~~ 454 (679)
++..-+|.|-.-+.-| ||+|++-
T Consensus 109 k~e~G~V~ILVNNAGI-~~~~~ll 131 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGI-VTGKKLL 131 (300)
T ss_pred HHhcCCceEEEecccc-ccCCCcc
Confidence 8777777777666666 7777653
No 429
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=86.51 E-value=0.93 Score=51.92 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=30.8
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++|+|+|+||+|..++..|+..|+ +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 567899999999999999999999998 8888764
No 430
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=86.47 E-value=3.4 Score=46.48 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=29.1
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r 210 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTS 210 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999987 8999999999999997 5555554
No 431
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=86.39 E-value=4.1 Score=40.88 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCE
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRK 390 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ 390 (679)
++|+|.|+ |++|..+++.|+..|..-
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v 28 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTV 28 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46889986 899999999999999753
No 432
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=86.32 E-value=4.8 Score=40.31 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=27.9
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.| .|++|..+++.|+..|. .+++.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~ 38 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGT 38 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence 5678999998 58999999999999996 5555543
No 433
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=86.29 E-value=2.9 Score=42.20 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCE
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRK 390 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ 390 (679)
++|+|.|+ |++|..+++.|++.|..-
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v 29 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSV 29 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEE
Confidence 57899986 689999999999999753
No 434
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=86.28 E-value=2 Score=53.29 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=35.3
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSN 403 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sN 403 (679)
-.++||+|||+|-.|-++|..|++.| -++|++|...++.-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G-h~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG-HNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC-CeEEEEccccccccc
Confidence 47889999999999999999999998 569999987665444
No 435
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=86.28 E-value=5.3 Score=39.33 Aligned_cols=59 Identities=32% Similarity=0.423 Sum_probs=41.9
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEec
Q 005745 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (679)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~~ 444 (679)
.++|+| .|+||-.+++.|+.-|..+|.++-... . +..+.+.+.+.|++. ++++..+..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~---~~~~~~~~i~~l~~~--g~~v~~~~~ 60 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------A---PSAEAEAAIRELESA--GARVEYVQC 60 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------G---GSTTHHHHHHHHHHT--T-EEEEEE-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------C---ccHHHHHHHHHHHhC--CCceeeecc
Confidence 467885 999999999999999999999976532 2 455666777777775 556666654
Q ss_pred c
Q 005745 445 A 445 (679)
Q Consensus 445 ~ 445 (679)
+
T Consensus 61 D 61 (181)
T PF08659_consen 61 D 61 (181)
T ss_dssp -
T ss_pred C
Confidence 3
No 436
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.25 E-value=1 Score=47.73 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-+||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999996 68888863
No 437
>PLN02214 cinnamoyl-CoA reductase
Probab=86.25 E-value=3.8 Score=44.33 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.3
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++|+|.|+ |.+|+.+++.|+..|. +++.++.
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 42 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVR 42 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 356789999998 9999999999999995 4555443
No 438
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=86.25 E-value=1.9 Score=49.45 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=66.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhh-CCCcEEEEEec
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~i-nP~v~v~~~~~ 444 (679)
.|.+||+|..|..+|++|++.|. ++++.|.+.-....+... +.... +-.-+...++....+ .|++-+..++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~--~~~g~----~~~~~~s~~e~v~~l~~~dvIil~v~- 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAE--HAKGK----KIVGAYSIEEFVQSLERPRKIMLMVK- 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhh--ccCCC----CceecCCHHHHHhhcCCCCEEEEECC-
Confidence 47899999999999999999997 688877643322222111 00000 000111222222222 3555544432
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHhcCCeEEEEe
Q 005745 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITAA 506 (679)
Q Consensus 445 ~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~esR~lin~~~~~~~kp~I~aa 506 (679)
+|.++ ....+.+...+..-|+|||++-+ ..++... ..+..+++-+|+++
T Consensus 73 ----~~~~v--------~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~-~~l~~~gi~fvdap 123 (467)
T TIGR00873 73 ----AGAPV--------DAVINQLLPLLEKGDIIIDGGNSHYPDTERRY-KELKAKGILFVGSG 123 (467)
T ss_pred ----CcHHH--------HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHH-HHHHhcCCEEEcCC
Confidence 11111 11223444556677999998753 4455554 45678899999874
No 439
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.24 E-value=2.8 Score=47.24 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=24.3
Q ss_pred CeEEEEcCChHHHHHHH--HHH---HcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVAR--MLM---AWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~--~La---~~GVg~ItlVD~D 397 (679)
.||.|||+|+.|...+. .++ .....+++|+|.|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did 38 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDID 38 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCC
Confidence 37999999999998665 454 3333589999863
No 440
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.22 E-value=3.4 Score=48.70 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=61.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~~ 443 (679)
+.+|+|+|.|-.|..+++.|...|+ +++++|.|. .+++.+. +. +..+ +.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~----------------------~~v~~~~----~~--g~~v--~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDI----------------------SAVNLMR----KY--GYKV--YY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCH----------------------HHHHHHH----hC--CCeE--EE
Confidence 4689999999999999999999997 578888743 1233332 21 2222 22
Q ss_pred cccCCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHhcC
Q 005745 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANTN 499 (679)
Q Consensus 444 ~~Ipm~gh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~esR~lin~~~~~~~ 499 (679)
.+. .+.+-+++. ++++|+|+.++|+.+.-..+...+++++
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 449 GDA----------------TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred eeC----------------CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 211 133444433 6789999999999998888888887764
No 441
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.19 E-value=3.4 Score=43.43 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.9
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+++++++|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeC
Confidence 467888999975 6999999999999997 5666665
No 442
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.17 E-value=0.96 Score=47.72 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 579999999999999999999997 78888864
No 443
>PRK07985 oxidoreductase; Provisional
Probab=86.14 E-value=3.4 Score=43.70 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD 395 (679)
++++++++|.|+ |++|..+|+.|++.|.. +.+++
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~ 80 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAISY 80 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEec
Confidence 478889999986 89999999999999964 55554
No 444
>PRK06182 short chain dehydrogenase; Validated
Probab=86.13 E-value=3.1 Score=42.93 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=27.2
Q ss_pred cCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r 35 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAAR 35 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999996 8999999999999986 5565554
No 445
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.12 E-value=3.1 Score=42.01 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.1
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~I 391 (679)
+++++|+|.|+ |++|..+++.|+..|..-+
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~ 34 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVV 34 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence 56789999985 5699999999999998543
No 446
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.02 E-value=0.91 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCC-EEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg-~ItlVD~D 397 (679)
.||.|||+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999975
No 447
>PRK12743 oxidoreductase; Provisional
Probab=86.00 E-value=3.3 Score=42.38 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEE
Q 005745 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (679)
Q Consensus 364 ~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlV 394 (679)
.++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~ 32 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGIT 32 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 467889875 68999999999999974 4443
No 448
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=85.98 E-value=4.4 Score=42.77 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=23.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHc-CCCEEEEEe
Q 005745 365 RKCLLLGAGTLGCQVARMLMAW-GVRKITLLD 395 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~-GVg~ItlVD 395 (679)
.||.|+|||.+|..+++.|... ++.-..+++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~ 33 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIV 33 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence 4899999999999999999876 343333334
No 449
>PRK12742 oxidoreductase; Provisional
Probab=85.97 E-value=3.8 Score=40.96 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=27.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEE
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlV 394 (679)
.+++++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 367889999996 89999999999999974 4443
No 450
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=85.79 E-value=3.5 Score=46.89 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=30.7
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 56799999999999999999999997 59999864
No 451
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.78 E-value=6.8 Score=40.35 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 364 ~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.++|+|.| .||+|.++|+.|+..|--++++++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 45688886 5899999999999997557777765
No 452
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.74 E-value=1.1 Score=47.54 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=28.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999994 78888863
No 453
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.74 E-value=0.47 Score=51.34 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=28.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-++|.|||+|..|+-+|..++. |.=.+++.|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCC
Confidence 3689999999999999999999 44678888875
No 454
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=85.63 E-value=1 Score=48.68 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=29.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCcc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~V 399 (679)
.|+|||+|-+|+.+|..|++.|. +++++|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 455
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=85.58 E-value=2.6 Score=48.11 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.4
Q ss_pred hHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEE
Q 005745 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKI 391 (679)
Q Consensus 358 gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~I 391 (679)
+...|++++|+|||+|..|..-|.+|--.|+..+
T Consensus 30 ~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 30 GASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3688999999999999999999999999998544
No 456
>PRK07069 short chain dehydrogenase; Validated
Probab=85.56 E-value=4.4 Score=40.86 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=25.0
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+|+|.| .|++|..+++.|++.|. ++.++|.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r 31 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDI 31 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 478887 68899999999999996 6777764
No 457
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.49 E-value=3.6 Score=43.11 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=29.7
Q ss_pred hcCCeEEEEcC---ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++.|+|.|+ +|+|.++|+.|++.|. ++.++|.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecC
Confidence 56889999998 4999999999999997 67777653
No 458
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=85.41 E-value=3.8 Score=44.97 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=28.4
Q ss_pred HHHhhccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 468 LTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 468 l~~li~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
.++++.+.|+||+||....++... ..+.++|+++|..
T Consensus 72 ~~el~~~vDVVIdaT~~~~~~e~a-~~~~~aGk~VI~~ 108 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVGAKNK-ELYEKAGVKAIFQ 108 (341)
T ss_pred hhHhhccCCEEEECCCchhhHHHH-HHHHHCCCEEEEc
Confidence 455667899999999887777655 4667788988864
No 459
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=85.34 E-value=4.7 Score=41.27 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=38.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHH----cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 366 KCLLLGA-GTLGCQVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~----~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
.|+|.|+ ||+|.++|+.|++ .|. ++.+++.+ ..+.+.+++.++...|..++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~----------------------~~~~~~~~~~l~~~~~~~~v~ 58 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARN----------------------DEALRQLKAEIGAERSGLRVV 58 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcC----------------------HHHHHHHHHHHHhcCCCceEE
Confidence 4677765 6999999999997 564 67776542 224555566666555666666
Q ss_pred EEeccc
Q 005745 441 GVVMAI 446 (679)
Q Consensus 441 ~~~~~I 446 (679)
.+..++
T Consensus 59 ~~~~Dl 64 (256)
T TIGR01500 59 RVSLDL 64 (256)
T ss_pred EEEecc
Confidence 666544
No 460
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.13 E-value=4.2 Score=48.42 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=30.6
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 46799999999999999999999996 68899865
No 461
>PRK07832 short chain dehydrogenase; Provisional
Probab=84.99 E-value=3.5 Score=42.63 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.2
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++++|.| .|++|..+++.|+..|.. +.+++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r 32 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDR 32 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 3688887 589999999999999964 676664
No 462
>PRK06392 homoserine dehydrogenase; Provisional
Probab=84.88 E-value=5.1 Score=43.84 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=24.9
Q ss_pred eEEEEcCChHHHHHHHHHHH--------cCCCEEEEEeC
Q 005745 366 KCLLLGAGTLGCQVARMLMA--------WGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~--------~GVg~ItlVD~ 396 (679)
||.|+|+|++|..+++.|.. .+++-+.+.|.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 79999999999999999987 34445556565
No 463
>PRK07856 short chain dehydrogenase; Provisional
Probab=84.88 E-value=2.9 Score=42.55 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=47.6
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCC-cHHHHHHHHHHhhCCCcEE
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKAMAAVKSLERIFPAVAA 439 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk-~KAeaaae~L~~inP~v~v 439 (679)
+++++++|.|+ |++|..+++.|+..|. ++.++|.+.-... ......+..-|+ .. ...+.+.+.+.+.++.+.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~~-~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~id~ 78 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPETV-DGRPAEFHAADV---RDPDQVAALVDAIVERHGRLDV 78 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhhh-cCCceEEEEccC---CCHHHHHHHHHHHHHHcCCCCE
Confidence 57889999985 7899999999999997 6788887542211 111222334455 22 2344555555555555555
Q ss_pred EEEe
Q 005745 440 EGVV 443 (679)
Q Consensus 440 ~~~~ 443 (679)
-.+.
T Consensus 79 vi~~ 82 (252)
T PRK07856 79 LVNN 82 (252)
T ss_pred EEEC
Confidence 4443
No 464
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=84.67 E-value=2.6 Score=47.65 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=59.7
Q ss_pred eEEEEcCChHHH-HHHHHHHH----cCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 005745 366 KCLLLGAGTLGC-QVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (679)
Q Consensus 366 kVlIvGaGgLGs-~VA~~La~----~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~ 440 (679)
||.|||+|+.-+ .+.+.|+. .++++|+|+|-|. ...+.+ + ...+.+.+++..+.++++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~--------v-------~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI--------V-------GALAKRMVKKAGLPIKVH 64 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH--------H-------HHHHHHHHHhhCCCeEEE
Confidence 799999999755 45555554 5789999999874 111111 1 233445556666677766
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC--ChHHHHHHHHHHHhcCC
Q 005745 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD--TRESRWLPTLLCANTNK 500 (679)
Q Consensus 441 ~~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD--s~esR~lin~~~~~~~k 500 (679)
... +.++.++++|+||.+.- ..+.|..-.++..++|+
T Consensus 65 ~t~-----------------------d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi 103 (419)
T cd05296 65 LTT-----------------------DRREALEGADFVFTQIRVGGLEARALDERIPLKHGV 103 (419)
T ss_pred EeC-----------------------CHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence 643 45677899999998753 33455444445555544
No 465
>PRK06349 homoserine dehydrogenase; Provisional
Probab=84.63 E-value=4.5 Score=45.73 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHH
Q 005745 364 SRKCLLLGAGTLGCQVARMLMA 385 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~ 385 (679)
..+|.|+|+|++|..+++.|..
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~ 24 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEE 24 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHH
Confidence 4689999999999999998854
No 466
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.59 E-value=4.7 Score=44.86 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.0
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+.+.+|+|||. |-+|..+|+.|-...-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 46789999999 999999999999754446777776
No 467
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=84.57 E-value=4.1 Score=43.77 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.0
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 365 ~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
++|+|.|+ |.+|+++++.|+..|. +++.+|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence 47899986 8899999999999996 5666665
No 468
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=84.55 E-value=1.3 Score=48.78 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=29.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 366 kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
+|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999995 799999974
No 469
>PRK00811 spermidine synthase; Provisional
Probab=84.51 E-value=3.3 Score=44.12 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=25.2
Q ss_pred cCCeEEEEcCChHHHHHHHHHHH-cCCCEEEEEeCCc
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGR 398 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~-~GVg~ItlVD~D~ 398 (679)
..++||+||+|+ |.. ++.+++ .++.+++.||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~-~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGT-LREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHH-HHHHHcCCCCCEEEEEeCCH
Confidence 467999999996 444 444445 4899999999853
No 470
>PRK13984 putative oxidoreductase; Provisional
Probab=84.48 E-value=2.9 Score=49.05 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=31.0
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
+.++|+|||+|..|..+|..|.+.|+ +++++|.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57789999999999999999999997 688887654
No 471
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=84.44 E-value=4.2 Score=43.68 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=26.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
||+|.|+ |.+|+.+++.|+..|...+..+|.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~ 33 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDK 33 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecC
Confidence 6999986 999999999999999766665554
No 472
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=84.43 E-value=2.9 Score=43.79 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=46.4
Q ss_pred ceEecCCcccceEecccCCCChhhhhhhhhhhhhhhhhhhcCCchhHHhhcCCeEEEEcCChHHHHHHHHHHHcCCCEEE
Q 005745 313 GWELNKGRKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKIT 392 (679)
Q Consensus 313 gwe~~~Gkl~p~~~dl~~~~dp~~la~~~~dlnlry~R~rllp~~gq~kL~~~kVlIvGaGgLGs~VA~~La~~GVg~It 392 (679)
.|....|++.|... ++|.+ +-|++.+..+.++ |.+++||=||||| ..++.-||+.| .++|
T Consensus 26 ~wwd~~g~f~~LH~-----~N~~r---------l~~i~~~~~~~~~---l~g~~vLDvGCGg--G~Lse~mAr~G-a~Vt 85 (243)
T COG2227 26 RWWDPEGEFKPLHK-----INPLR---------LDYIREVARLRFD---LPGLRVLDVGCGG--GILSEPLARLG-ASVT 85 (243)
T ss_pred hhcCCCCceeeeee-----eccch---------hhhhhhhhhcccC---CCCCeEEEecCCc--cHhhHHHHHCC-CeeE
Confidence 34333788888763 34543 3467766655555 8999999999995 59999999999 7777
Q ss_pred EEeC
Q 005745 393 LLDN 396 (679)
Q Consensus 393 lVD~ 396 (679)
=+|-
T Consensus 86 giD~ 89 (243)
T COG2227 86 GIDA 89 (243)
T ss_pred EecC
Confidence 7765
No 473
>PLN00198 anthocyanidin reductase; Provisional
Probab=84.40 E-value=6.6 Score=42.02 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=28.2
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++|+|.| +|.+|+.+++.|+..|. ++.+++.+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4577899998 78899999999999996 56655543
No 474
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=84.37 E-value=3.9 Score=51.15 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.8
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 47899999999999999999999996 78888865
No 475
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.36 E-value=4.2 Score=42.92 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.3
Q ss_pred HhhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 360 ~kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
..+++++|+|.|+ |+||..+++.|++.|. ++.+++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r 78 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL 78 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5778899999985 8899999999999996 4667654
No 476
>PRK15076 alpha-galactosidase; Provisional
Probab=84.34 E-value=3.3 Score=46.92 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=24.1
Q ss_pred CeEEEEcCChHHHHHHH--HHH-HcCC--CEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVAR--MLM-AWGV--RKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~--~La-~~GV--g~ItlVD~D 397 (679)
.||.|||+|++|...+. .++ ..+. .+|+|+|-|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid 39 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDID 39 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCC
Confidence 48999999999977655 554 2222 489999963
No 477
>PRK10537 voltage-gated potassium channel; Provisional
Probab=84.29 E-value=3.6 Score=46.14 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=59.1
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~ 441 (679)
.++.+|+|+|.|.+|..+++.|...|. .++++|.|.++ + . . . .+.. .
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~------~-------~----~----------~---~g~~--v 284 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE------H-------R----L----------P---DDAD--L 284 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh------h-------h----c----------c---CCCc--E
Confidence 346789999999999999999998885 67888876321 0 0 0 0 0111 1
Q ss_pred EecccCCCCCCCCCccccccccChhhHHH-hhccCCEEEEeCCChHHHHHHHHHHHhcCC
Q 005745 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTNK 500 (679)
Q Consensus 442 ~~~~Ipm~gh~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~esR~lin~~~~~~~k 500 (679)
+..+ + .+.+.+++ -+++++.|+.++++.+.-..+...++..+.
T Consensus 285 I~GD------~----------td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 285 IPGD------S----------SDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred EEeC------C----------CCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 1111 1 13344433 367899999999998877777777777663
No 478
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.25 E-value=6.4 Score=43.37 Aligned_cols=100 Identities=20% Similarity=0.105 Sum_probs=65.0
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
...+|.|+|+||+|-++...+..+|.++|.-||-. ..|-+-|++ +-... .+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~----------------------~~Kl~~A~~-----fGAT~--~v 235 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDIN----------------------PEKLELAKK-----FGATH--FV 235 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCC----------------------HHHHHHHHh-----cCCce--ee
Confidence 46799999999999999999999999999999861 223332222 11111 11
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a 505 (679)
++.+. ..-.+.+.++-+ +.|.+|+|+.+.+....--.++.+-|.-+|-+
T Consensus 236 -----------n~~~~---~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 236 -----------NPKEV---DDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred -----------cchhh---hhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEe
Confidence 10000 011234444545 89999999999997666666777777765543
No 479
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=84.14 E-value=6.4 Score=40.20 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=27.1
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD 395 (679)
.++++.++|.|+ |++|.++|+.|+..|.. +.++|
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~ 41 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGIN 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEec
Confidence 367889999976 48999999999999964 44544
No 480
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=84.10 E-value=2.9 Score=52.08 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=32.1
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~ 398 (679)
-.+++|+|||+|..|..+|..|++.|. +++++|...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 367899999999999999999999996 799998753
No 481
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.03 E-value=6 Score=35.21 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHhhCCCcEEEEE--ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC--ChHHHHHHHHHHH
Q 005745 421 FKAMAAVKSLERIFPAVAAEGV--VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD--TRESRWLPTLLCA 496 (679)
Q Consensus 421 ~KAeaaae~L~~inP~v~v~~~--~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD--s~esR~lin~~~~ 496 (679)
......++.+++. +.+...+ ... .......++..++.+|+||..|| +..+.|.+-..|.
T Consensus 10 ~~~~~~~~~~~~~--G~~~~~hg~~~~---------------~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 10 DRERRYKRILEKY--GGKLIHHGRDGG---------------DEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred ccHHHHHHHHHHc--CCEEEEEecCCC---------------CccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHH
Confidence 4556667777775 4555555 111 11223458889999999999999 5568899999999
Q ss_pred hcCCeEEEE
Q 005745 497 NTNKITITA 505 (679)
Q Consensus 497 ~~~kp~I~a 505 (679)
++++|++.+
T Consensus 73 k~~ip~~~~ 81 (97)
T PF10087_consen 73 KYGIPIIYS 81 (97)
T ss_pred HcCCcEEEE
Confidence 999999976
No 482
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=83.92 E-value=2.4 Score=45.69 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=25.4
Q ss_pred EEcCChHHHHHHHHHHHcCC-CEEEEEeC
Q 005745 369 LLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (679)
Q Consensus 369 IvGaGgLGs~VA~~La~~GV-g~ItlVD~ 396 (679)
|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999998 57999886
No 483
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=83.88 E-value=4.8 Score=41.56 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.7
Q ss_pred hcCCeEEEEcC---ChHHHHHHHHHHHcCCCEEEEEe
Q 005745 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (679)
Q Consensus 362 L~~~kVlIvGa---GgLGs~VA~~La~~GVg~ItlVD 395 (679)
++++.|+|.|+ +|+|.++|+.|++.|.. +.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~ 39 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITY 39 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEe
Confidence 57889999998 49999999999999974 55554
No 484
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=83.86 E-value=5 Score=48.52 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.3
Q ss_pred hcCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 362 L~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
-..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 467899999999999999999999996 68999863
No 485
>PLN02827 Alcohol dehydrogenase-like
Probab=83.81 E-value=8.8 Score=42.20 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=30.1
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|+..++.+|.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4789999999999999999999999988887764
No 486
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=83.78 E-value=4.8 Score=42.63 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=25.9
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
||||.|+ |-+|+++++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999997 999999999999988 57777753
No 487
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.64 E-value=5.2 Score=41.30 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=30.0
Q ss_pred hhcCCeEEEEcCC---hHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 361 kL~~~kVlIvGaG---gLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~ 43 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQS 43 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCc
Confidence 4678889999996 799999999999997 57776653
No 488
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.63 E-value=1.3 Score=52.50 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCc-cC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR-VA 400 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~-Ve 400 (679)
...|+|||+|-.|+.+|..|++.|. +++|+|.+. +.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~~~~ 296 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGW-QVTLYEADEAPA 296 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-eEEEEecCCCcc
Confidence 3689999999999999999999997 699999874 53
No 489
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=83.54 E-value=1.4 Score=46.29 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCcc
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~V 399 (679)
.+|+|||+|-.|+.+|..|++.|+. ++|+|...-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999976 888887543
No 490
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.52 E-value=5.5 Score=46.35 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=29.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
+-+|+|+|+|-+|..+++.|...|. +++++|.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECC
Confidence 4789999999999999999999996 57888873
No 491
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.40 E-value=11 Score=40.35 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=29.9
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
.+.+|+|.|+|++|..++..+...|++.++.+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4679999999999999999999999988777664
No 492
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=83.29 E-value=0.78 Score=50.88 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=36.7
Q ss_pred eEEEEcCChHHH-HHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCc
Q 005745 366 KCLLLGAGTLGC-QVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL 412 (679)
Q Consensus 366 kVlIvGaGgLGs-~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~ 412 (679)
||+++|+|.+|+ .+...|.++| -.|++||...--..-+++|-+|+-
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g-~~V~~vd~~~~~v~aL~~qglY~v 48 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNG-FEVTFVDVNQELIDALNKRKSYQV 48 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCC-CeEEEEECCHHHHHHHhcCCCeEE
Confidence 799999999998 7788999999 569999965445567777767643
No 493
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.26 E-value=0.38 Score=57.91 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=28.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCC
Q 005745 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (679)
Q Consensus 365 ~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D 397 (679)
++|.|||+|+.|+.+|..++..|+ .++++|.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCC
Confidence 579999999999999999999996 67788865
No 494
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.16 E-value=5 Score=41.09 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=28.0
Q ss_pred hcCCeEEEEc-CChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvG-aGgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.| .||+|..+|+.|++.|.. +.+++.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~ 40 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGV 40 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecC
Confidence 6688899997 579999999999999974 556554
No 495
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.10 E-value=1.9 Score=43.32 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.2
Q ss_pred hcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 362 L~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999998 8999999999999997 6888775
No 496
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=83.08 E-value=4.7 Score=44.28 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=28.5
Q ss_pred hccCCEEEEeCCChHHHHHHHHHHHhcCCeEEEE--eeCcc
Q 005745 472 ILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGFD 510 (679)
Q Consensus 472 i~~~DvV~~~tDs~esR~lin~~~~~~~kp~I~a--alG~~ 510 (679)
++++|+||.|+.+..++.+...+ .+.|+.+|+- ++.++
T Consensus 64 ~~~vD~vFla~p~~~s~~~v~~~-~~~G~~VIDlS~~fR~~ 103 (336)
T PRK05671 64 FSQVQLAFFAAGAAVSRSFAEKA-RAAGCSVIDLSGALPSA 103 (336)
T ss_pred hcCCCEEEEcCCHHHHHHHHHHH-HHCCCeEEECchhhcCC
Confidence 47899999999987777765555 5678999974 45544
No 497
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=82.97 E-value=7.6 Score=42.22 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred cCCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccCccCCCcCccCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 005745 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (679)
Q Consensus 363 ~~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve~sNl~RQ~L~~~~Dv~~~Gk~KAeaaae~L~~inP~v~v~~~ 442 (679)
..++|+|||+|-.|.++|..|++.|. +++++|.+..-..-+...... +..-.+.....+.++... .++-+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~--------~~~~~~~~~~~~~~l~~~-~i~~~ 86 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPE--------FRIPIERVREGVKELEEA-GVVFH 86 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcc--------cccCHHHHHHHHHHHHhC-CeEEe
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 005745 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (679)
Q Consensus 443 ~~~Ipm~gh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (679)
....-+-.+.......................+|.||.+|.+
T Consensus 87 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 87 TRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred cCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
No 498
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=82.94 E-value=1.6 Score=50.72 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=31.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCCEEEEEeCCccC
Q 005745 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVA 400 (679)
Q Consensus 364 ~~kVlIvGaGgLGs~VA~~La~~GVg~ItlVD~D~Ve 400 (679)
...|+|||+|.+|+.+|+.|++.|. +++++|.+.+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 3579999999999999999999997 88999986554
No 499
>PLN02206 UDP-glucuronate decarboxylase
Probab=82.88 E-value=8.6 Score=43.61 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=28.5
Q ss_pred hhcCCeEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 361 kL~~~kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
+-+++||+|.|+ |-+|+++++.|...|. +++.+|+
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 345689999995 9999999999999996 4556664
No 500
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=82.87 E-value=9.9 Score=39.32 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=25.8
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCCEEEEEeC
Q 005745 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (679)
Q Consensus 366 kVlIvGa-GgLGs~VA~~La~~GVg~ItlVD~ 396 (679)
||+|+|+ |.+|..+++.|...|. +++.++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 6899996 9999999999999984 6777765
Done!