BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005746
(679 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4JSW2|MSHA_CORJK D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium
jeikeium (strain K411) GN=mshA PE=3 SV=1
Length = 419
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 558 LRRKVLSKSDGKQQQALKILI--GSVGSKSNKVPYVKEILEFLSQHSNLSKAM--LWTPA 613
L R V D QQ L ++I GS G+ N++ E L+ L++ +S+ + L
Sbjct: 241 LLRAVAELLDRHPQQQLAVVICGGSSGAGGNEL----ERLQLLAEELGISRCVRFLAPRP 296
Query: 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP 651
+ +Y AAD+ + S E+FG V +EA A G P
Sbjct: 297 PEELVGVYRAADIVAVPS--YNESFGLVALEAQACGTP 332
>sp|B2S469|SYR_TREPS Arginine--tRNA ligase OS=Treponema pallidum subsp. pallidum (strain
SS14) GN=argS PE=3 SV=1
Length = 589
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 502 RGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRK 561
RG+ Q + G+S ++L SE++T+ E VR+ L + N+ V S L +K
Sbjct: 252 RGIKQTYERTGISFDKLYFESETYTKGREEVRRGLACGVFYQMEDNSIWVDLSSLGLDKK 311
Query: 562 VLSKSDG 568
L +SDG
Sbjct: 312 ALLRSDG 318
>sp|O83803|SYR_TREPA Arginine--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=argS PE=3 SV=1
Length = 589
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 502 RGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRK 561
RG+ Q + G+S ++L SE++T+ E VR+ L + N+ V S L +K
Sbjct: 252 RGIKQTYERTGISFDKLYFESETYTKGREEVRRGLACGVFYQMEDNSIWVDLSSLGLDKK 311
Query: 562 VLSKSDG 568
L +SDG
Sbjct: 312 ALLRSDG 318
>sp|C0ZUT0|MSHA_RHOE4 D-inositol 3-phosphate glycosyltransferase OS=Rhodococcus
erythropolis (strain PR4 / NBRC 100887) GN=mshA PE=3
SV=1
Length = 442
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 561 KVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP--ATTRVA 618
+V+S+S G L+IL+ VG S ++L L++ ++ + + P A R+A
Sbjct: 251 EVISRSPGLP---LRILV--VGGPSGTGLARPDVLIELARSLGITAQVTFLPPQAPERLA 305
Query: 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVP 651
+Y A+D+ + S E+FG V IEA A G P
Sbjct: 306 DVYRASDLVAVPS--YSESFGLVAIEAQACGTP 336
>sp|D1A4Q3|MSHA_THECD D-inositol 3-phosphate glycosyltransferase OS=Thermomonospora
curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /
NCIMB 10081) GN=mshA PE=3 SV=1
Length = 431
Score = 36.2 bits (82), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 414 TPTSSPEKMREKRNLLR---DSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIE 470
TP R + LLR D R+ +GL L+L + I P K +L+ +A LM+E
Sbjct: 200 TPGVDLSLFRPRNGLLRGGADQARRRLGLPRDAYLLLFVGRIQPLKAPDVLLRAAALMVE 259
Query: 471 QEPSM 475
+P++
Sbjct: 260 ADPAL 264
>sp|O05083|Y1698_HAEIN Uncharacterized glycosyltransferase HI_1698 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1698 PE=3 SV=1
Length = 353
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 592 KEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP 651
+E L+ L++ ++ ++ + P T V+ Y ++ +Y + SQ E V IEAMAFG+P
Sbjct: 224 EENLKNLAKALDIEDSVNFIPRTNDVSFYYESSSIYCLPSQT--EGLPLVVIEAMAFGLP 281
>sp|D1BD84|MSHA_SANKS D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii
(strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)
GN=mshA PE=3 SV=1
Length = 420
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 558 LRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR- 616
L R + +D + L +++G + P LE L+ +S +L+ PA +R
Sbjct: 254 LVRALGVMADHGDELPLLVVLGGASGR----PTALRELEALAYQVGVSDDVLFLPAVSRS 309
Query: 617 -VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSGT 668
+A + AD+ + S+ E+FG V +EA A G P ++ + + +D SG
Sbjct: 310 ELARWFRCADLVAVPSRS--ESFGLVAVEAQACGTPVVAADVGGLRTAVQDGRSGV 363
>sp|A3LRV8|PAN2_PICST PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAN2 PE=3 SV=2
Length = 1183
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL 298
+ W + IL++H+ S++G P + ++ T G S + G + E ++ ++L
Sbjct: 906 YPWKKPVILVYHDSSISGIPFDLFQIETFANLPGLNDSIIYRDHFAGSIRESHKKDYELL 965
Query: 299 EDRGEPSFKTSMKAD 313
+ PS T + D
Sbjct: 966 TRQEAPSLGTLIAID 980
>sp|O07147|PIMA_MYCLE GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol
mannosyltransferase OS=Mycobacterium leprae (strain TN)
GN=pimA PE=3 SV=1
Length = 374
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 593 EILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPK 652
E + FL Q + KA A R A +Y A ++ GE+FG V +EAMA G P
Sbjct: 243 EHIRFLGQVDDAGKA-----AAMRSADVYCAPNIG-------GESFGIVLVEAMAAGTPV 290
Query: 653 NISQIELSRK 662
S ++ R+
Sbjct: 291 VASDLDAFRR 300
>sp|C7QKE8|MSHA2_CATAD D-inositol 3-phosphate glycosyltransferase 2 OS=Catenulispora
acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC
102108 / JCM 14897) GN=mshA2 PE=3 SV=1
Length = 427
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSGT 668
TR+A Y AAD+ V+ S E+FG V IEA A G P + + + D SGT
Sbjct: 303 TRLADWYRAADIAVVPS--YSESFGLVAIEAQACGTPVVAARVGGLATAVADGRSGT 357
>sp|D6Z995|MSHA_SEGRD D-inositol 3-phosphate glycosyltransferase OS=Segniliparus rotundus
(strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985
/ JCM 13578) GN=mshA PE=3 SV=1
Length = 449
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSGTWNR 671
++A +Y AAD+ + S E+FG V IEA A G P + + ++ D SG
Sbjct: 327 AQLAKVYRAADLVAVPSHS--ESFGLVAIEAQACGTPVVAAKVGGLPVAVADQVSGVLVD 384
Query: 672 CWRHKR 677
W +R
Sbjct: 385 SWAPER 390
>sp|P42982|YPJH_BACSU Uncharacterized glycosyltransferase YpjH OS=Bacillus subtilis
(strain 168) GN=ypjH PE=3 SV=2
Length = 377
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSG 667
RV LYS +D+ ++ S+ E+FG V +EAMA GVP NI I K+ SG
Sbjct: 265 RVEDLYSISDLKLLLSEK--ESFGLVLLEAMACGVPCIGTNIGGIPEVIKNNVSG 317
>sp|D1BZ82|MSHA_XYLCX D-inositol 3-phosphate glycosyltransferase OS=Xylanimonas
cellulosilytica (strain DSM 15894 / CECT 5975 / LMG
20990 / XIL07) GN=mshA PE=3 SV=1
Length = 417
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 581 VGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR--VASLYSAADVYVINSQGLGETF 638
+G S + V+E LE L+ + +L P R +A Y AADV + S E+F
Sbjct: 267 LGGASGRPTAVRE-LEALAHQCGVRDRVLVHPPVERRRLADWYRAADVVAVPSHN--ESF 323
Query: 639 GRVTIEAMAFGVP 651
G V EA A G P
Sbjct: 324 GLVAAEAQACGTP 336
>sp|D7C367|MSHA_STRBB D-inositol 3-phosphate glycosyltransferase OS=Streptomyces
bingchenggensis (strain BCW-1) GN=mshA PE=3 SV=1
Length = 455
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 575 KILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR--VASLYSAADVYVINSQ 632
+I++ VG S E L L+ +S + + P T+ +A Y AA V V+ S
Sbjct: 293 RIVVPVVGGPSGSGLAKPERLHKLAARLGVSDVIRFRPPCTQDELADWYRAASVLVMPS- 351
Query: 633 GLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSG 667
E+FG V IEA A G P + + ++ +D SG
Sbjct: 352 -YNESFGLVAIEAQACGTPVIAAEVGGLPVAVRDGHSG 388
>sp|Q59002|Y1607_METJA Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1607 PE=3 SV=1
Length = 390
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 620 LYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657
LY +ADV VI S + E FG V +EAMA G P +S +
Sbjct: 280 LYKSADVVVIPS--VYEPFGIVALEAMAAGTPVVVSSV 315
>sp|Q5YP47|MSHA_NOCFA D-inositol 3-phosphate glycosyltransferase OS=Nocardia farcinica
(strain IFM 10152) GN=mshA PE=3 SV=1
Length = 451
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 572 QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVI 629
+AL++LI VG S + L L+ +S+ + + P R+ +Y AAD+ +
Sbjct: 265 RALRVLI--VGGPSGSGLQRPDALIELAAELGISERVTFLPPQPPERLVQVYRAADLVAV 322
Query: 630 NSQGLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSGTWNR 671
S E+FG V IEA A G P ++ + + +D +G R
Sbjct: 323 PS--YSESFGLVAIEAQASGTPVLAADVGGLSTAVRDGATGLLVR 365
>sp|C8XA09|MSHA_NAKMY D-inositol 3-phosphate glycosyltransferase OS=Nakamurella
multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543
/ Y-104) GN=mshA PE=3 SV=1
Length = 466
Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 574 LKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINS 631
L I+ G+ G+ + E+++ L + + PA +A +Y AADV + S
Sbjct: 284 LVIVGGASGAGRRPGHQLHELVDLLGSRDTID----FRPAVPAAELAVIYRAADVVAVPS 339
Query: 632 QGLGETFGRVTIEAMAFGVP---KNISQIELSRKDPTSGT 668
E+FG V IEA A G P + + ++ D SG+
Sbjct: 340 --YNESFGLVAIEAQASGTPVVAAAVGGLTVAVADGVSGS 377
>sp|B1MHQ0|MSHA_MYCA9 D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium
abscessus (strain ATCC 19977 / DSM 44196) GN=mshA PE=3
SV=1
Length = 443
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 574 LKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR--VASLYSAADVYVINS 631
+++LI VG S L+ L+ ++ + + P TR +A +Y AAD+ + S
Sbjct: 266 VRVLI--VGGPSGSGLDEPTALQDLAVDLGIADRVTFLPPQTRERLAQVYRAADIVAVPS 323
Query: 632 QGLGETFGRVTIEAMAFGVP 651
E+FG V IEA A G P
Sbjct: 324 --YSESFGLVAIEAQACGTP 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,443,983
Number of Sequences: 539616
Number of extensions: 9818177
Number of successful extensions: 29980
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 29967
Number of HSP's gapped (non-prelim): 43
length of query: 679
length of database: 191,569,459
effective HSP length: 124
effective length of query: 555
effective length of database: 124,657,075
effective search space: 69184676625
effective search space used: 69184676625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)