Query 005746
Match_columns 679
No_of_seqs 190 out of 2648
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 13:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0853 Glycosyltransferase [C 100.0 1.7E-37 3.7E-42 337.4 11.7 391 172-666 6-406 (495)
2 TIGR03088 stp2 sugar transfera 100.0 4.3E-31 9.4E-36 266.7 31.2 295 242-667 1-314 (374)
3 cd03812 GT1_CapH_like This fam 100.0 7.6E-30 1.7E-34 251.2 29.9 286 244-666 1-307 (358)
4 cd03819 GT1_WavL_like This fam 100.0 2.3E-28 5E-33 240.4 30.4 291 247-667 2-306 (355)
5 cd03805 GT1_ALG2_like This fam 100.0 1.7E-28 3.8E-33 247.6 29.2 293 243-666 1-340 (392)
6 cd03807 GT1_WbnK_like This fam 100.0 1E-27 2.2E-32 229.1 29.0 288 244-666 1-309 (365)
7 PRK15179 Vi polysaccharide bio 100.0 1.1E-27 2.3E-32 270.9 31.6 291 244-667 283-633 (694)
8 cd03792 GT1_Trehalose_phosphor 100.0 9.1E-28 2E-32 244.6 27.8 289 244-667 1-315 (372)
9 cd04962 GT1_like_5 This family 100.0 1.9E-27 4.1E-32 236.6 29.0 283 243-666 1-311 (371)
10 cd04951 GT1_WbdM_like This fam 100.0 8.6E-27 1.9E-31 228.5 32.2 287 244-666 1-303 (360)
11 cd03796 GT1_PIG-A_like This fa 100.0 8.8E-27 1.9E-31 240.8 29.8 282 244-668 1-312 (398)
12 cd03811 GT1_WabH_like This fam 100.0 5.3E-26 1.1E-30 215.0 27.4 284 244-666 1-304 (353)
13 TIGR03449 mycothiol_MshA UDP-N 100.0 1.6E-25 3.4E-30 229.2 31.3 283 254-667 19-344 (405)
14 PRK00654 glgA glycogen synthas 99.9 2.4E-25 5.2E-30 237.7 28.8 309 243-667 1-398 (466)
15 PLN02316 synthase/transferase 99.9 5.3E-25 1.2E-29 256.5 33.2 310 242-666 587-960 (1036)
16 cd03821 GT1_Bme6_like This fam 99.9 3E-25 6.4E-30 213.1 25.7 285 244-665 1-321 (375)
17 PRK09922 UDP-D-galactose:(gluc 99.9 2.5E-25 5.5E-30 227.1 26.0 276 243-666 1-299 (359)
18 cd03802 GT1_AviGT4_like This f 99.9 2.3E-25 5.1E-30 217.5 24.1 265 243-667 1-286 (335)
19 TIGR02472 sucr_P_syn_N sucrose 99.9 5.6E-25 1.2E-29 232.5 28.3 289 253-666 24-381 (439)
20 PRK10307 putative glycosyl tra 99.9 1.9E-24 4.2E-29 223.6 30.5 282 243-660 1-342 (412)
21 cd03820 GT1_amsD_like This fam 99.9 2.6E-24 5.7E-29 203.8 28.3 267 244-662 1-289 (348)
22 cd03800 GT1_Sucrose_synthase T 99.9 1.4E-24 3E-29 217.0 27.2 283 254-667 20-344 (398)
23 PLN02871 UDP-sulfoquinovose:DA 99.9 1.9E-24 4.2E-29 229.7 29.6 279 240-665 56-371 (465)
24 PRK15484 lipopolysaccharide 1, 99.9 2.5E-24 5.3E-29 223.8 29.7 279 243-667 3-319 (380)
25 TIGR02095 glgA glycogen/starch 99.9 2.7E-24 5.9E-29 228.7 29.7 312 243-669 1-409 (473)
26 TIGR02149 glgA_Coryne glycogen 99.9 6E-24 1.3E-28 214.4 30.3 283 243-666 1-321 (388)
27 PRK14099 glycogen synthase; Pr 99.9 5.7E-24 1.2E-28 230.7 31.5 310 240-664 1-408 (485)
28 cd03818 GT1_ExpC_like This fam 99.9 6.3E-25 1.4E-29 226.5 22.6 282 244-667 1-342 (396)
29 PRK15490 Vi polysaccharide bio 99.9 4.2E-24 9.2E-29 236.8 28.3 290 244-666 163-513 (578)
30 cd03816 GT1_ALG1_like This fam 99.9 1.9E-23 4.1E-28 219.9 30.8 298 243-667 3-359 (415)
31 cd03825 GT1_wcfI_like This fam 99.9 1.2E-23 2.7E-28 206.7 27.4 266 243-667 1-306 (365)
32 cd03795 GT1_like_4 This family 99.9 2.7E-23 5.9E-28 203.7 29.2 280 244-665 1-305 (357)
33 cd03822 GT1_ecORF704_like This 99.9 5.8E-23 1.3E-27 199.7 30.8 286 244-664 1-307 (366)
34 cd03791 GT1_Glycogen_synthase_ 99.9 1.3E-23 2.7E-28 221.4 28.3 309 244-667 1-412 (476)
35 cd03808 GT1_cap1E_like This fa 99.9 3.4E-23 7.4E-28 197.1 28.1 277 244-666 1-304 (359)
36 PRK10125 putative glycosyl tra 99.9 7.2E-24 1.6E-28 224.5 24.9 271 243-666 1-347 (405)
37 PLN02939 transferase, transfer 99.9 6.1E-23 1.3E-27 237.2 34.5 308 242-662 481-893 (977)
38 cd03817 GT1_UGDG_like This fam 99.9 4.7E-23 1E-27 198.4 28.2 284 244-666 1-319 (374)
39 PRK15427 colanic acid biosynth 99.9 4.9E-23 1.1E-27 217.1 29.0 283 243-667 1-346 (406)
40 cd04955 GT1_like_6 This family 99.9 1.5E-22 3.1E-27 199.5 30.3 277 244-666 1-309 (363)
41 cd03809 GT1_mtfB_like This fam 99.9 6.9E-24 1.5E-28 206.0 20.2 281 244-666 1-313 (365)
42 cd03794 GT1_wbuB_like This fam 99.9 3.4E-22 7.5E-27 192.0 29.2 285 244-667 1-341 (394)
43 cd03801 GT1_YqgM_like This fam 99.9 9.3E-23 2E-27 192.6 24.9 283 244-665 1-315 (374)
44 cd03823 GT1_ExpE7_like This fa 99.9 6.1E-23 1.3E-27 197.8 23.2 273 244-666 1-304 (359)
45 cd03799 GT1_amsK_like This is 99.9 2E-22 4.3E-27 197.4 26.1 280 244-667 1-303 (355)
46 cd03814 GT1_like_2 This family 99.9 2.4E-22 5.3E-27 194.6 26.0 275 244-666 1-307 (364)
47 PRK14098 glycogen synthase; Pr 99.9 3.1E-22 6.8E-27 217.4 29.5 307 243-664 6-420 (489)
48 cd05844 GT1_like_7 Glycosyltra 99.9 2.9E-22 6.3E-27 199.3 26.3 274 246-666 2-311 (367)
49 TIGR02470 sucr_synth sucrose s 99.9 4.9E-22 1.1E-26 227.1 30.2 324 230-666 243-684 (784)
50 PLN02275 transferase, transfer 99.9 1.8E-21 3.9E-26 201.5 30.2 290 252-667 12-351 (371)
51 cd03806 GT1_ALG11_like This fa 99.9 1.2E-21 2.6E-26 207.4 29.3 283 245-662 3-361 (419)
52 cd03798 GT1_wlbH_like This fam 99.9 1.2E-21 2.7E-26 186.4 26.4 286 245-668 1-321 (377)
53 TIGR02468 sucrsPsyn_pln sucros 99.9 5.8E-22 1.3E-26 231.3 28.5 201 356-666 376-612 (1050)
54 PLN02846 digalactosyldiacylgly 99.9 6.3E-22 1.4E-26 215.5 26.1 271 241-660 3-335 (462)
55 PLN02949 transferase, transfer 99.9 3.8E-21 8.3E-26 208.4 27.8 284 242-661 33-390 (463)
56 cd03813 GT1_like_3 This family 99.9 2.5E-21 5.5E-26 207.4 21.0 217 310-666 172-411 (475)
57 PLN00142 sucrose synthase 99.9 1E-20 2.2E-25 217.0 25.9 200 356-666 470-707 (815)
58 TIGR03087 stp1 sugar transfera 99.9 1.6E-20 3.4E-25 194.4 23.1 267 245-659 1-332 (397)
59 cd03804 GT1_wbaZ_like This fam 99.9 4E-20 8.6E-25 185.7 23.9 61 603-666 239-301 (351)
60 PLN02501 digalactosyldiacylgly 99.9 7.3E-20 1.6E-24 206.8 27.1 204 309-661 432-654 (794)
61 TIGR02918 accessory Sec system 99.8 4.8E-20 1E-24 201.6 22.0 167 359-667 268-435 (500)
62 PHA01633 putative glycosyl tra 99.8 1.7E-19 3.7E-24 189.6 20.7 167 357-662 88-260 (335)
63 PHA01630 putative group 1 glyc 99.8 1.3E-18 2.9E-23 180.8 25.6 204 311-666 46-250 (331)
64 cd04949 GT1_gtfA_like This fam 99.8 7.5E-19 1.6E-23 177.5 21.7 164 358-664 154-318 (372)
65 KOG1111 N-acetylglucosaminyltr 99.8 5E-19 1.1E-23 187.3 15.5 269 252-663 12-309 (426)
66 cd04946 GT1_AmsK_like This fam 99.8 6.3E-18 1.4E-22 177.8 22.7 171 356-667 178-352 (407)
67 cd03785 GT1_MurG MurG is an N- 99.8 6.2E-17 1.3E-21 162.3 23.6 256 247-659 2-282 (350)
68 cd01635 Glycosyltransferase_GT 99.8 8.1E-17 1.8E-21 146.4 21.1 64 599-664 154-220 (229)
69 PRK00726 murG undecaprenyldiph 99.8 9.2E-17 2E-21 163.3 23.0 254 243-658 2-281 (357)
70 PRK05749 3-deoxy-D-manno-octul 99.7 7.3E-16 1.6E-20 161.5 27.2 273 246-657 52-352 (425)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.7 1.3E-16 2.8E-21 172.2 21.1 243 311-669 131-408 (460)
72 TIGR01133 murG undecaprenyldip 99.7 9.1E-16 2E-20 153.8 22.7 253 243-659 1-280 (348)
73 PF00534 Glycos_transf_1: Glyc 99.7 5.5E-17 1.2E-21 147.5 12.6 131 430-668 2-135 (172)
74 PRK13609 diacylglycerol glucos 99.7 6.4E-15 1.4E-19 151.7 21.5 267 242-659 4-304 (380)
75 cd03793 GT1_Glycogen_synthase_ 99.6 2E-14 4.3E-19 160.7 24.0 97 358-470 223-326 (590)
76 TIGR02400 trehalose_OtsA alpha 99.6 2.5E-15 5.3E-20 163.3 16.3 195 361-668 183-402 (456)
77 PLN02605 monogalactosyldiacylg 99.6 8.2E-15 1.8E-19 152.7 17.8 207 310-657 99-310 (382)
78 cd04950 GT1_like_1 Glycosyltra 99.5 5E-13 1.1E-17 138.8 21.6 60 605-664 253-317 (373)
79 COG0297 GlgA Glycogen synthase 99.5 3.8E-12 8.1E-17 140.5 29.0 309 243-665 1-408 (487)
80 PRK00025 lpxB lipid-A-disaccha 99.5 3.4E-12 7.5E-17 130.8 18.8 52 593-655 234-286 (380)
81 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 5.8E-12 1.3E-16 127.5 17.7 170 359-667 139-315 (363)
82 PLN03063 alpha,alpha-trehalose 99.4 1.8E-12 4E-17 149.7 15.9 189 361-664 203-418 (797)
83 PRK13608 diacylglycerol glucos 99.4 5.2E-12 1.1E-16 133.0 17.6 52 600-657 250-301 (391)
84 PRK14501 putative bifunctional 99.4 5.5E-13 1.2E-17 151.8 9.7 188 361-662 189-403 (726)
85 TIGR00215 lpxB lipid-A-disacch 99.4 2.8E-11 6.1E-16 128.1 21.3 255 243-655 6-292 (385)
86 COG0438 RfaG Glycosyltransfera 99.4 7.8E-12 1.7E-16 115.6 14.3 68 598-667 249-318 (381)
87 TIGR00236 wecB UDP-N-acetylglu 99.3 1.4E-10 3.1E-15 119.3 17.5 56 600-662 249-307 (365)
88 TIGR02398 gluc_glyc_Psyn gluco 99.2 4.5E-10 9.7E-15 124.2 20.5 159 391-663 250-423 (487)
89 PF13692 Glyco_trans_1_4: Glyc 99.2 5.8E-11 1.3E-15 104.4 6.5 51 606-657 53-103 (135)
90 PF13439 Glyco_transf_4: Glyco 99.0 4E-09 8.6E-14 93.7 11.0 144 246-403 3-176 (177)
91 KOG1387 Glycosyltransferase [C 98.6 4.8E-06 1E-10 89.8 22.4 89 571-663 304-394 (465)
92 PLN03064 alpha,alpha-trehalose 98.6 1.8E-06 4E-11 102.2 20.5 189 361-663 287-501 (934)
93 TIGR03590 PseG pseudaminic aci 98.6 1.8E-05 3.9E-10 81.1 22.9 55 594-658 215-269 (279)
94 PF13579 Glyco_trans_4_4: Glyc 98.5 1.5E-06 3.2E-11 76.0 11.4 134 255-397 1-160 (160)
95 PRK09814 beta-1,6-galactofuran 98.5 1.1E-05 2.5E-10 83.5 19.2 61 604-665 205-276 (333)
96 TIGR02094 more_P_ylases alpha- 98.3 3.1E-05 6.7E-10 88.3 17.6 71 590-662 443-516 (601)
97 TIGR03713 acc_sec_asp1 accesso 98.2 7.4E-06 1.6E-10 91.6 11.7 45 606-653 409-455 (519)
98 PRK12446 undecaprenyldiphospho 98.2 0.00084 1.8E-08 71.2 24.9 44 608-657 236-280 (352)
99 PF05693 Glycogen_syn: Glycoge 98.1 2.6E-05 5.7E-10 88.8 12.6 259 358-659 218-503 (633)
100 cd03784 GT1_Gtf_like This fami 97.8 0.0084 1.8E-07 62.8 24.1 50 603-659 285-334 (401)
101 TIGR02919 accessory Sec system 97.8 4.9E-05 1.1E-09 83.7 8.0 85 561-658 295-380 (438)
102 TIGR03568 NeuC_NnaA UDP-N-acet 97.8 0.013 2.9E-07 62.6 25.5 43 605-654 261-305 (365)
103 PF13528 Glyco_trans_1_3: Glyc 97.8 0.003 6.6E-08 63.8 19.6 54 605-664 231-285 (318)
104 COG3914 Spy Predicted O-linked 97.5 0.0078 1.7E-07 68.8 20.6 281 224-655 243-537 (620)
105 PF00982 Glyco_transf_20: Glyc 97.4 0.0057 1.2E-07 68.4 17.8 193 361-667 197-418 (474)
106 PF02684 LpxB: Lipid-A-disacch 97.3 0.01 2.2E-07 64.7 17.3 52 595-655 234-285 (373)
107 PF13477 Glyco_trans_4_2: Glyc 97.3 0.0094 2E-07 53.2 14.3 95 244-346 1-108 (139)
108 cd04299 GT1_Glycogen_Phosphory 97.0 0.011 2.4E-07 69.9 15.3 65 596-660 537-603 (778)
109 PF13844 Glyco_transf_41: Glyc 97.0 0.0035 7.7E-08 70.2 10.2 63 593-658 328-393 (468)
110 PRK10117 trehalose-6-phosphate 96.9 0.0075 1.6E-07 67.7 12.1 187 361-662 179-393 (474)
111 COG1519 KdtA 3-deoxy-D-manno-o 96.9 0.29 6.2E-06 54.7 24.0 198 244-474 49-260 (419)
112 PRK01021 lpxB lipid-A-disaccha 96.9 0.073 1.6E-06 61.7 19.4 31 618-655 483-513 (608)
113 COG0707 MurG UDP-N-acetylgluco 96.8 0.1 2.2E-06 56.7 19.0 47 608-660 237-283 (357)
114 PF04007 DUF354: Protein of un 96.8 0.15 3.2E-06 55.1 19.7 44 608-658 233-276 (335)
115 TIGR03492 conserved hypothetic 96.2 0.029 6.3E-07 60.8 10.4 44 607-657 280-323 (396)
116 PLN02205 alpha,alpha-trehalose 96.2 0.058 1.2E-06 64.6 13.6 99 361-474 257-370 (854)
117 COG0380 OtsA Trehalose-6-phosp 96.0 0.21 4.6E-06 56.6 16.0 188 361-661 203-418 (486)
118 KOG2941 Beta-1,4-mannosyltrans 95.9 1.8 3.8E-05 48.2 22.0 76 580-661 298-377 (444)
119 PF13524 Glyco_trans_1_2: Glyc 95.6 0.0085 1.8E-07 50.8 2.4 39 627-667 2-40 (92)
120 PF09314 DUF1972: Domain of un 95.5 0.48 1E-05 47.6 14.7 150 243-399 2-185 (185)
121 PF06258 Mito_fiss_Elm1: Mitoc 94.8 5.3 0.00012 42.9 21.1 57 598-659 201-259 (311)
122 COG0763 LpxB Lipid A disacchar 94.8 0.11 2.5E-06 57.2 8.8 32 617-655 258-289 (381)
123 PF04101 Glyco_tran_28_C: Glyc 94.5 0.058 1.3E-06 50.4 5.0 50 604-659 53-102 (167)
124 TIGR00661 MJ1255 conserved hyp 93.5 0.12 2.6E-06 53.7 5.5 53 604-662 227-280 (321)
125 TIGR01426 MGT glycosyltransfer 93.4 0.65 1.4E-05 49.1 10.9 48 604-658 273-320 (392)
126 COG0381 WecB UDP-N-acetylgluco 93.0 17 0.00037 40.7 21.0 53 602-661 258-312 (383)
127 PF04464 Glyphos_transf: CDP-G 90.7 11 0.00025 39.7 16.2 48 602-656 248-295 (369)
128 PF07429 Glyco_transf_56: 4-al 90.6 32 0.0007 38.3 20.4 76 580-658 220-298 (360)
129 COG3660 Predicted nucleoside-d 85.8 60 0.0013 35.6 21.6 63 590-660 211-276 (329)
130 TIGR02195 heptsyl_trn_II lipop 82.5 21 0.00044 37.3 12.4 41 608-655 234-276 (334)
131 PF00343 Phosphorylase: Carboh 82.3 41 0.00089 40.6 16.0 72 588-659 496-578 (713)
132 PF05159 Capsule_synth: Capsul 82.1 2.5 5.4E-05 43.1 5.5 44 606-657 182-226 (269)
133 COG3980 spsG Spore coat polysa 80.6 1.8 3.9E-05 46.8 4.0 76 558-651 173-248 (318)
134 PRK10422 lipopolysaccharide co 80.5 30 0.00065 36.7 13.0 54 596-656 233-288 (352)
135 PF03033 Glyco_transf_28: Glyc 78.1 3.9 8.4E-05 36.7 4.8 49 252-303 6-54 (139)
136 PRK02797 4-alpha-L-fucosyltran 77.1 9.2 0.0002 41.9 8.0 94 560-657 162-258 (322)
137 TIGR02201 heptsyl_trn_III lipo 75.4 47 0.001 34.9 12.6 54 595-655 230-285 (344)
138 PRK14089 ipid-A-disaccharide s 75.0 1.8 4E-05 47.0 2.2 32 616-654 228-259 (347)
139 PF02350 Epimerase_2: UDP-N-ac 74.1 7.3 0.00016 42.0 6.4 83 561-661 204-289 (346)
140 cd03789 GT1_LPS_heptosyltransf 72.2 22 0.00048 36.1 9.0 58 594-658 167-226 (279)
141 PF01408 GFO_IDH_MocA: Oxidore 72.1 7.8 0.00017 34.1 5.1 85 553-655 6-92 (120)
142 COG1819 Glycosyl transferases, 71.0 17 0.00038 40.1 8.5 48 242-294 1-48 (406)
143 cd04300 GT1_Glycogen_Phosphory 69.6 37 0.00081 41.4 11.3 71 589-659 583-664 (797)
144 PRK10916 ADP-heptose:LPS hepto 68.2 95 0.0021 32.9 12.9 41 608-655 244-286 (348)
145 PRK14986 glycogen phosphorylas 66.9 62 0.0014 39.7 12.4 72 589-660 596-678 (815)
146 COG1647 Esterase/lipase [Gener 61.9 15 0.00033 38.9 5.4 50 243-294 15-64 (243)
147 PRK10964 ADP-heptose:LPS hepto 60.6 1E+02 0.0022 32.2 11.3 56 592-657 223-280 (322)
148 PRK14106 murD UDP-N-acetylmura 58.5 30 0.00066 37.7 7.4 70 242-320 5-77 (450)
149 PF08323 Glyco_transf_5: Starc 58.0 19 0.0004 36.9 5.3 39 244-282 1-43 (245)
150 TIGR01081 mpl UDP-N-acetylmura 57.5 13 0.00029 40.9 4.5 68 250-321 3-70 (448)
151 PF03016 Exostosin: Exostosin 57.2 42 0.00091 34.0 7.7 40 614-656 227-268 (302)
152 PRK06718 precorrin-2 dehydroge 55.9 45 0.00097 33.6 7.5 69 241-319 9-78 (202)
153 PRK01710 murD UDP-N-acetylmura 55.7 38 0.00083 37.6 7.7 78 235-321 7-87 (458)
154 TIGR03264 met_CoM_red_C methyl 55.5 18 0.00038 37.1 4.5 58 232-290 23-80 (194)
155 TIGR01470 cysG_Nterm siroheme 53.5 61 0.0013 32.8 8.0 70 241-320 8-78 (205)
156 PF00070 Pyr_redox: Pyridine n 51.5 32 0.0007 28.8 4.9 42 259-300 9-60 (80)
157 TIGR02093 P_ylase glycogen/sta 51.2 72 0.0016 39.0 9.4 56 604-659 602-661 (794)
158 PRK06719 precorrin-2 dehydroge 51.1 56 0.0012 31.7 7.1 66 241-319 12-78 (157)
159 PRK05562 precorrin-2 dehydroge 49.0 69 0.0015 33.4 7.7 68 243-319 26-93 (223)
160 PRK14985 maltodextrin phosphor 48.2 64 0.0014 39.5 8.3 53 607-659 609-663 (798)
161 COG0673 MviM Predicted dehydro 48.0 48 0.001 34.3 6.5 53 594-654 42-96 (342)
162 PF10649 DUF2478: Protein of u 45.3 31 0.00067 34.3 4.4 43 616-658 85-132 (159)
163 COG0859 RfaF ADP-heptose:LPS h 42.3 1.1E+02 0.0024 32.6 8.3 60 591-659 219-280 (334)
164 PRK06988 putative formyltransf 42.3 45 0.00098 35.8 5.4 69 243-318 3-84 (312)
165 PRK13886 conjugal transfer pro 42.2 4.4E+02 0.0096 27.9 12.8 42 244-285 3-44 (241)
166 TIGR02193 heptsyl_trn_I lipopo 42.2 1.6E+02 0.0035 30.5 9.3 41 609-656 238-280 (319)
167 TIGR00460 fmt methionyl-tRNA f 41.4 77 0.0017 34.0 7.0 69 243-318 1-85 (313)
168 COG0058 GlgP Glucan phosphoryl 41.1 1.9E+02 0.0041 35.4 10.7 73 589-661 537-614 (750)
169 PRK01438 murD UDP-N-acetylmura 41.0 88 0.0019 34.7 7.6 70 242-321 16-88 (480)
170 PF01113 DapB_N: Dihydrodipico 40.6 32 0.00069 31.8 3.5 47 614-662 58-104 (124)
171 PF03853 YjeF_N: YjeF-related 39.7 1.2E+02 0.0025 29.7 7.4 73 242-317 25-105 (169)
172 PF01075 Glyco_transf_9: Glyco 38.8 1.3E+02 0.0027 29.8 7.6 56 591-655 150-208 (247)
173 PRK14573 bifunctional D-alanyl 38.7 57 0.0012 39.1 6.1 65 252-322 10-74 (809)
174 PF13614 AAA_31: AAA domain; P 38.4 89 0.0019 28.6 6.1 45 244-288 1-45 (157)
175 PRK05282 (alpha)-aspartyl dipe 38.3 1.2E+02 0.0025 31.8 7.5 67 587-659 46-123 (233)
176 KOG1050 Trehalose-6-phosphate 38.1 1.6E+02 0.0035 35.8 9.5 45 614-660 363-411 (732)
177 PRK13809 orotate phosphoribosy 37.8 1.3E+02 0.0028 30.8 7.6 56 241-299 117-174 (206)
178 PF10087 DUF2325: Uncharacteri 37.5 96 0.0021 27.4 5.9 64 595-658 15-84 (97)
179 PRK13810 orotate phosphoribosy 36.7 94 0.002 31.3 6.3 57 241-300 121-179 (187)
180 COG1819 Glycosyl transferases, 36.1 50 0.0011 36.6 4.7 48 604-658 282-329 (406)
181 PRK03803 murD UDP-N-acetylmura 35.9 1.2E+02 0.0025 33.5 7.5 75 239-321 2-78 (448)
182 PF12038 DUF3524: Domain of un 35.8 4.6E+02 0.01 26.7 10.9 126 243-381 1-139 (168)
183 TIGR01082 murC UDP-N-acetylmur 35.7 52 0.0011 36.4 4.8 65 252-322 5-69 (448)
184 COG1817 Uncharacterized protei 35.7 6.9E+02 0.015 28.2 17.4 40 259-299 14-53 (346)
185 PLN02863 UDP-glucoronosyl/UDP- 35.0 58 0.0012 37.1 5.1 94 551-654 288-386 (477)
186 PRK13811 orotate phosphoribosy 33.6 1.2E+02 0.0026 29.8 6.4 57 241-300 103-161 (170)
187 PRK00421 murC UDP-N-acetylmura 33.5 99 0.0021 34.3 6.5 71 241-322 6-77 (461)
188 COG0461 PyrE Orotate phosphori 33.4 90 0.0019 32.3 5.7 70 225-300 97-169 (201)
189 PF12000 Glyco_trans_4_3: Gkyc 33.1 76 0.0016 31.8 5.0 37 359-402 133-169 (171)
190 PF03358 FMN_red: NADPH-depend 33.0 1.2E+02 0.0025 28.1 6.0 40 243-282 1-41 (152)
191 PRK02472 murD UDP-N-acetylmura 32.6 1.5E+02 0.0033 32.4 7.7 61 260-321 16-78 (447)
192 TIGR01279 DPOR_bchN light-inde 32.0 73 0.0016 35.3 5.2 80 234-320 266-352 (407)
193 PRK00005 fmt methionyl-tRNA fo 32.0 83 0.0018 33.6 5.4 69 243-318 1-85 (309)
194 PRK04308 murD UDP-N-acetylmura 31.4 2.1E+02 0.0045 31.6 8.5 60 260-321 16-77 (445)
195 PF12146 Hydrolase_4: Putative 31.2 1E+02 0.0023 26.6 5.0 35 243-279 16-50 (79)
196 PHA02518 ParA-like protein; Pr 31.2 1.6E+02 0.0035 28.2 6.8 47 244-290 1-47 (211)
197 TIGR00853 pts-lac PTS system, 30.5 1.2E+02 0.0026 27.3 5.4 76 581-659 10-85 (95)
198 TIGR01832 kduD 2-deoxy-D-gluco 30.4 1E+02 0.0022 30.1 5.4 20 260-279 17-36 (248)
199 PF04230 PS_pyruv_trans: Polys 30.0 71 0.0015 30.5 4.1 37 614-657 248-284 (286)
200 PHA03392 egt ecdysteroid UDP-g 29.8 67 0.0015 36.7 4.6 49 603-658 343-393 (507)
201 TIGR01007 eps_fam capsular exo 29.7 1.7E+02 0.0037 28.4 6.8 45 241-285 15-59 (204)
202 PRK00207 sulfur transfer compl 29.4 99 0.0022 29.2 4.9 41 243-284 1-43 (128)
203 PRK02842 light-independent pro 29.2 84 0.0018 35.0 5.1 80 235-321 283-370 (427)
204 PF02302 PTS_IIB: PTS system, 29.1 2.2E+02 0.0049 24.1 6.6 51 581-632 6-56 (90)
205 PRK13812 orotate phosphoribosy 28.3 1.6E+02 0.0034 29.4 6.3 57 241-300 106-164 (176)
206 PRK12429 3-hydroxybutyrate deh 27.4 1.3E+02 0.0028 29.4 5.5 20 260-279 16-35 (258)
207 PF01738 DLH: Dienelactone hyd 27.2 1.1E+02 0.0024 29.8 5.0 42 242-285 13-54 (218)
208 PRK13849 putative crown gall t 26.8 1.8E+02 0.0038 30.0 6.5 48 243-290 1-48 (231)
209 TIGR01361 DAHP_synth_Bsub phos 26.6 2.3E+02 0.005 29.9 7.5 59 594-657 80-140 (260)
210 PRK07890 short chain dehydroge 25.6 1.2E+02 0.0027 29.6 5.1 20 260-279 17-36 (258)
211 TIGR01426 MGT glycosyltransfer 25.5 5.2E+02 0.011 27.6 10.0 96 206-320 203-300 (392)
212 PRK08125 bifunctional UDP-gluc 25.3 1.9E+02 0.0042 33.8 7.3 69 243-318 1-82 (660)
213 smart00851 MGS MGS-like domain 25.0 99 0.0022 26.8 3.8 54 261-319 2-63 (90)
214 PHA03392 egt ecdysteroid UDP-g 25.0 1.3E+02 0.0028 34.5 5.7 38 241-280 19-57 (507)
215 PRK03767 NAD(P)H:quinone oxido 24.9 2.8E+02 0.0061 27.5 7.4 74 243-320 2-78 (200)
216 KOG3742 Glycogen synthase [Car 24.9 24 0.00053 40.8 0.0 44 615-660 492-535 (692)
217 TIGR03371 cellulose_yhjQ cellu 24.2 1.9E+02 0.0041 28.6 6.1 43 243-285 1-43 (246)
218 CHL00073 chlN photochlorophyll 24.0 1.7E+02 0.0037 33.6 6.4 82 231-319 303-399 (457)
219 COG2910 Putative NADH-flavin r 23.9 1.7E+02 0.0036 30.8 5.6 33 243-281 1-33 (211)
220 COG3414 SgaB Phosphotransferas 23.5 31 0.00068 31.4 0.4 59 580-640 7-65 (93)
221 PRK00048 dihydrodipicolinate r 23.4 66 0.0014 33.3 2.8 47 614-662 51-97 (257)
222 PF12965 DUF3854: Domain of un 23.3 3.1E+02 0.0068 26.2 7.1 63 233-295 58-127 (130)
223 PRK06194 hypothetical protein; 23.3 2.2E+02 0.0047 28.7 6.4 21 259-279 17-37 (287)
224 cd03409 Chelatase_Class_II Cla 22.9 3.4E+02 0.0074 23.3 6.7 51 245-295 2-59 (101)
225 COG4671 Predicted glycosyl tra 22.9 3.4E+02 0.0073 31.0 8.1 51 606-662 277-327 (400)
226 PRK05569 flavodoxin; Provision 22.9 2.7E+02 0.0058 25.5 6.4 36 244-281 3-39 (141)
227 PRK10637 cysG siroheme synthas 22.7 2.6E+02 0.0056 31.6 7.4 66 241-319 11-80 (457)
228 PF06925 MGDG_synth: Monogalac 22.7 2.3E+02 0.005 27.1 6.2 70 309-386 87-158 (169)
229 PRK02006 murD UDP-N-acetylmura 22.4 1.3E+02 0.0027 34.0 4.9 71 242-321 7-79 (498)
230 PF12017 Tnp_P_element: Transp 22.4 2.1E+02 0.0044 30.3 6.1 52 241-295 181-232 (236)
231 PF04392 ABC_sub_bind: ABC tra 22.4 41 0.00089 34.9 1.1 92 566-658 124-220 (294)
232 COG1648 CysG Siroheme synthase 22.4 1.9E+02 0.0041 29.8 5.7 65 242-319 12-80 (210)
233 PF04609 MCR_C: Methyl-coenzym 22.2 1.1E+02 0.0023 33.2 4.0 53 233-285 60-113 (268)
234 PF11169 DUF2956: Protein of u 22.2 41 0.00089 31.7 0.9 19 67-85 83-101 (103)
235 PF13241 NAD_binding_7: Putati 22.0 2.5E+02 0.0055 25.0 5.9 63 241-319 6-68 (103)
236 COG4007 Predicted dehydrogenas 21.9 1E+02 0.0022 33.9 3.8 47 250-301 27-76 (340)
237 COG0569 TrkA K+ transport syst 21.8 2.6E+02 0.0056 28.7 6.6 62 256-319 7-74 (225)
238 cd05017 SIS_PGI_PMI_1 The memb 21.8 2.7E+02 0.0058 25.2 6.1 52 244-300 45-96 (119)
239 PRK04148 hypothetical protein; 21.8 1.8E+02 0.0039 28.3 5.2 65 243-317 18-83 (134)
240 PRK13054 lipid kinase; Reviewe 21.6 2.7E+02 0.0059 29.2 6.9 49 240-291 1-49 (300)
241 TIGR02026 BchE magnesium-proto 21.5 1.5E+02 0.0032 33.8 5.2 37 244-280 1-45 (497)
242 PF02441 Flavoprotein: Flavopr 21.5 1E+02 0.0023 28.4 3.4 72 243-319 1-81 (129)
243 cd05565 PTS_IIB_lactose PTS_II 20.9 2.6E+02 0.0056 25.8 5.7 72 582-656 8-79 (99)
244 TIGR03609 S_layer_CsaB polysac 20.8 2.8E+02 0.0062 28.6 6.8 55 595-656 222-276 (298)
245 PRK08993 2-deoxy-D-gluconate 3 20.6 2.5E+02 0.0054 27.9 6.1 31 244-279 11-41 (253)
246 COG1646 Predicted phosphate-bi 20.6 1.5E+02 0.0032 31.7 4.6 51 576-632 45-95 (240)
247 TIGR01087 murD UDP-N-acetylmur 20.5 1.8E+02 0.004 31.8 5.6 64 252-321 5-72 (433)
248 KOG1192 UDP-glucuronosyl and U 20.1 1.6E+02 0.0036 32.2 5.1 38 242-282 6-43 (496)
249 PRK06128 oxidoreductase; Provi 20.0 4.2E+02 0.009 27.3 7.8 21 261-281 68-88 (300)
No 1
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.7e-37 Score=337.35 Aligned_cols=391 Identities=22% Similarity=0.151 Sum_probs=323.0
Q ss_pred CCCCCCcccee-eEeeccchhhcCCCCCCCCcccceeeccCCcchhhhccccccccccccCCcccccccCCCCeEEEEeC
Q 005746 172 RGKGRGKQKAK-LDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFH 250 (679)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~gp~~~~e~~~l~~s~~~~~~~c~~k~~f~~~~~~rKILlI~h 250 (679)
....+-.||.. ..++..+..++.|+.|..+.+|+...+++|.-|+++++|++...+ +|+ +-. ..+++++.++++.|
T Consensus 6 ~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s-~~~-~lg-~~d~G~qV~~l~~h 82 (495)
T KOG0853|consen 6 SSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS-GQD-VLG-LPDTGGQVVYLTSH 82 (495)
T ss_pred hhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHh-ccc-ccC-CCCCCceEEEEehh
Confidence 34455566664 333344444788999999999999999999999999999999999 899 666 89999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCCC--ChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchhHHHHHH
Q 005746 251 ELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG--LMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWID 327 (679)
Q Consensus 251 eLsmgGAplsmmeLAteL~s-~G~~VsaVvLs~~Gg--L~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav~aswI~ 327 (679)
..+++ +|..++.++..|.- ++..|+...+++..+ +......++++|+..+....++..+++|++|.+.+.|+.||.
T Consensus 83 ~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~ 161 (495)
T KOG0853|consen 83 EDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLL 161 (495)
T ss_pred hhhhc-chHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHH
Confidence 99999 99999999999986 899998888887664 677778899999999998889999999999999999999999
Q ss_pred HHHHhcCCCCccEEEeeehhhHHHHHH--HHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhh
Q 005746 328 QYITRFPAGGSQVVWWIMENRREYFDR--AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFV 405 (679)
Q Consensus 328 qyia~~pag~s~VvWwI~E~rreYfdr--~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafv 405 (679)
+++.+ |....+++||+|+.++.|+.+ ....+.+...-++-++.+..+|..++....+....+..+++++.+++...+
T Consensus 162 ~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y 240 (495)
T KOG0853|consen 162 KQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTY 240 (495)
T ss_pred HHhcC-CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceee
Confidence 99888 999999999999999999986 344455555555668999999999988777766667899999999887778
Q ss_pred hccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccc
Q 005746 406 AGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRN 485 (679)
Q Consensus 406 agi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~ 485 (679)
++++.+.++| ++-+++...+..+|.+.|.+..+++++++.++.|+|||+++++|+..+....+.+
T Consensus 241 ~ei~~s~~~~-----~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~---------- 305 (495)
T KOG0853|consen 241 PEIDGSWFTY-----GQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEP---------- 305 (495)
T ss_pred ccccchhccc-----cccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCC----------
Confidence 8776655555 3445556678889999999999999999999999999999999999876543321
Q ss_pred ccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhccc
Q 005746 486 VGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK 565 (679)
Q Consensus 486 ~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 565 (679)
-+
T Consensus 306 ---------------------------------------------------~~--------------------------- 307 (495)
T KOG0853|consen 306 ---------------------------------------------------SI--------------------------- 307 (495)
T ss_pred ---------------------------------------------------CC---------------------------
Confidence 01
Q ss_pred ccccccceEEEEEE---eeCCCCCChHHHHHHHHHHHHhCCC-CCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHH
Q 005746 566 SDGKQQQALKILIG---SVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRV 641 (679)
Q Consensus 566 l~~~~~~a~lvLiG---~VGs~snk~~y~k~~L~~L~~~lnL-s~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV 641 (679)
+..+.+++| +++..++...|+++++++ +++++| ++.|.|+..+++++.++.+||+.+..+|+..|+||+|
T Consensus 308 -----~~~hl~~~g~~G~d~~~sen~~~~~el~~l-ie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv 381 (495)
T KOG0853|consen 308 -----SSEHLVVAGSRGYDERDSENVEYLKELLSL-IEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIV 381 (495)
T ss_pred -----CceEEEEecCCCccccchhhHHHHHHHHHH-HHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccce
Confidence 122344444 444445567999997765 556888 6899999999999999999999999999888999999
Q ss_pred HHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 642 TIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 642 ~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+|||||||+||+||+.||--|...+
T Consensus 382 ~IEAMa~glPvvAt~~GGP~EiV~~ 406 (495)
T KOG0853|consen 382 PIEAMACGLPVVATNNGGPAEIVVH 406 (495)
T ss_pred eHHHHhcCCCEEEecCCCceEEEEc
Confidence 9999999999999999997764433
No 2
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.3e-31 Score=266.72 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=207.1
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCC--cch---------hhhc
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE--PSF---------KTSM 310 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~--~sf---------k~~~ 310 (679)
++||++|++.++.||+++++++|+.+|.+.|+++.++++...+.+.+++.+.+++++..... ..+ -...
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999998888777677888888899998765432 111 1246
Q ss_pred CcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeee-----hhhH--HHHHHH-HHHhhcCCEEEEechhhHHHHHHHHHH
Q 005746 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIM-----ENRR--EYFDRA-KLVLDRVKLLVFLSESQTKQWLTWCEE 382 (679)
Q Consensus 311 kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~-----E~rr--eYfdr~-k~vl~rvk~LIfvSesq~k~w~~~~~e 382 (679)
++|+||+++..+ +...+.+.. .+.+..++..| +... ..+... +.....++.+|++|+...+... +.
T Consensus 81 ~~Divh~~~~~~--~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~---~~ 154 (374)
T TIGR03088 81 RPDIVHTRNLAA--LEAQLPAAL-AGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLR---GP 154 (374)
T ss_pred CCCEEEEcchhH--HHHHHHHHh-cCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHH---Hh
Confidence 899999997422 222222221 12221121111 1110 011111 2233457899999998776532 22
Q ss_pred hhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHH
Q 005746 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (679)
Q Consensus 383 egi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLL 462 (679)
.++. ..+..+||||++.+.+ .+... .+...+++...+++.++++++|++.+.||++.|+
T Consensus 155 ~~~~-~~~~~vi~ngvd~~~~--------------~~~~~------~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 155 VKVP-PAKIHQIYNGVDTERF--------------HPSRG------DRSPILPPDFFADESVVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred cCCC-hhhEEEeccCcccccc--------------CCCcc------chhhhhHhhcCCCCCeEEEEEecCCcccCHHHHH
Confidence 3433 2467899999986532 11100 1122344455677889999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcc
Q 005746 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (679)
Q Consensus 463 eA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (679)
+|++.+.++.+..
T Consensus 214 ~a~~~l~~~~~~~------------------------------------------------------------------- 226 (374)
T TIGR03088 214 RAFALLVRQLPEG------------------------------------------------------------------- 226 (374)
T ss_pred HHHHHHHHhCccc-------------------------------------------------------------------
Confidence 9999988765431
Q ss_pred cccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHH
Q 005746 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (679)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslys 622 (679)
.++.++++ +|.+. .++.++.+++.+++++.|.|+|..+++..+|+
T Consensus 227 ---------------------------~~~~~l~i---~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 271 (374)
T TIGR03088 227 ---------------------------AERLRLVI---VGDGP-----ARGACEQMVRAAGLAHLVWLPGERDDVPALMQ 271 (374)
T ss_pred ---------------------------ccceEEEE---ecCCc-----hHHHHHHHHHHcCCcceEEEcCCcCCHHHHHH
Confidence 12345564 45543 23456677778999999999999999999999
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 623 AADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 623 AADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+||++|+||. .|+||++++||||||+|||+|++++..+...+|
T Consensus 272 ~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~ 314 (374)
T TIGR03088 272 ALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHG 314 (374)
T ss_pred hcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCC
Confidence 9999999996 899999999999999999999999998765543
No 3
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=7.6e-30 Score=251.17 Aligned_cols=286 Identities=19% Similarity=0.199 Sum_probs=204.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC-CChhHHhcCCeEEEEcCCC--cc------h---hhhcC
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELARRKIKVLEDRGE--PS------F---KTSMK 311 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G-gL~~EL~rrgIkVl~~r~~--~s------f---k~~~k 311 (679)
||+++.+.++.||++..+.+++++|.+.||+|++++..... .+.+.+...++.++..... .. + ....+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999998876544 2555666778887743221 11 1 12468
Q ss_pred cCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH-------HH-H-HHHHHHhhcCCEEEEechhhHHHHHHHHHH
Q 005746 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------EY-F-DRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (679)
Q Consensus 312 aDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr-------eY-f-dr~k~vl~rvk~LIfvSesq~k~w~~~~~e 382 (679)
+|+||+++.... ++..++... .+.+.++.+.|.... .+ . ...+.++..++.++++|+...+... +
T Consensus 81 ~Dvv~~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~----~ 154 (358)
T cd03812 81 YDIVHVHGSSAS-GFILLAAKK-AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLF----G 154 (358)
T ss_pred CCEEEEeCcchh-HHHHHHHhh-CCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHH----h
Confidence 999999876432 232223222 233344444443211 00 0 0123445678999999988766532 2
Q ss_pred hhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHH
Q 005746 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (679)
Q Consensus 383 egi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLL 462 (679)
. +. ..++.|||+|++.+.+. +... .+.. +++.+..++.++|+++|++.+.||+++|+
T Consensus 155 ~-~~-~~~~~vi~ngvd~~~~~--------------~~~~------~~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li 211 (358)
T cd03812 155 K-VK-NKKFKVIPNGIDLEKFI--------------FNEE------IRKK-RRELGILEDKFVIGHVGRFSEQKNHEFLI 211 (358)
T ss_pred C-CC-cccEEEEeccCcHHHcC--------------CCch------hhhH-HHHcCCCCCCEEEEEEeccccccChHHHH
Confidence 2 22 34689999999865321 1000 1122 66788889999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcc
Q 005746 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (679)
Q Consensus 463 eA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (679)
+|+..+.++.|+
T Consensus 212 ~a~~~l~~~~~~-------------------------------------------------------------------- 223 (358)
T cd03812 212 EIFAELLKKNPN-------------------------------------------------------------------- 223 (358)
T ss_pred HHHHHHHHhCCC--------------------------------------------------------------------
Confidence 999999765433
Q ss_pred cccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHH
Q 005746 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (679)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslys 622 (679)
..+++ +|++. ..+.++.++++.+++++|.|+|+.+++.++|+
T Consensus 224 ------------------------------~~l~i---vG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 265 (358)
T cd03812 224 ------------------------------AKLLL---VGDGE-----LEEEIKKKVKELGLEDKVIFLGVRNDVPELLQ 265 (358)
T ss_pred ------------------------------eEEEE---EeCCc-----hHHHHHHHHHhcCCCCcEEEecccCCHHHHHH
Confidence 33454 45543 23445566677899999999999999999999
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 623 AADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 623 AADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
.||++|+||. .|+||++++||||+|+|||+|+.++.++..++
T Consensus 266 ~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~ 307 (358)
T cd03812 266 AMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD 307 (358)
T ss_pred hcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc
Confidence 9999999996 89999999999999999999999999987666
No 4
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=2.3e-28 Score=240.41 Aligned_cols=291 Identities=20% Similarity=0.226 Sum_probs=205.8
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc--c------------hhhhcCc
Q 005746 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S------------FKTSMKA 312 (679)
Q Consensus 247 lI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~--s------------fk~~~ka 312 (679)
.|...++.||+++.+.+||++|.+.||+|.+++ ..+.+.+.+...+++++...... . +....++
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGHRSLVAS--AGGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKV 79 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCCEEEEEc--CCCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCC
Confidence 456788999999999999999999999998765 34556666777788776543211 0 0123589
Q ss_pred CEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcE
Q 005746 313 DLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (679)
Q Consensus 313 DLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~ 392 (679)
|+||+++... .|+..+.... ...++++.+|+.-.... ..+.++.+++.++++|+...+... +..++. ..++.
T Consensus 80 dii~~~~~~~-~~~~~~~~~~--~~~~~i~~~h~~~~~~~-~~~~~~~~~~~vi~~s~~~~~~~~---~~~~~~-~~k~~ 151 (355)
T cd03819 80 DIVHARSRAP-AWSAYLAARR--TRPPFVTTVHGFYSVNF-RYNAIMARGDRVIAVSNFIADHIR---ENYGVD-PDRIR 151 (355)
T ss_pred CEEEECCCch-hHHHHHHHHh--cCCCEEEEeCCchhhHH-HHHHHHHhcCEEEEeCHHHHHHHH---HhcCCC-hhhEE
Confidence 9999987533 3443322221 13457777776432211 224556789999999998877632 123433 23678
Q ss_pred EeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhC
Q 005746 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQE 472 (679)
Q Consensus 393 VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~ 472 (679)
+||+|++.+.+ .+..... .....+|++++++++.++++++|++.+.||++.+++|++.+.+..
T Consensus 152 ~i~ngi~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~ 214 (355)
T cd03819 152 VIPRGVDLDRF--------------DPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDD 214 (355)
T ss_pred EecCCcccccc--------------Cccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcC
Confidence 99999875532 1111100 112237889999999999999999999999999999999886542
Q ss_pred CCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccc
Q 005746 473 PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVS 552 (679)
Q Consensus 473 p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 552 (679)
+
T Consensus 215 ~------------------------------------------------------------------------------- 215 (355)
T cd03819 215 P------------------------------------------------------------------------------- 215 (355)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred cCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCC
Q 005746 553 FGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQ 632 (679)
Q Consensus 553 ~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq 632 (679)
+..+++ +|.+.... ++.+.+..++.++++.++|.|+|+.+++..+|++||++|+||.
T Consensus 216 -------------------~~~l~i---vG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~ 272 (355)
T cd03819 216 -------------------DVHLLI---VGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSAST 272 (355)
T ss_pred -------------------CeEEEE---EECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCC
Confidence 223454 45543333 3444455567778999999999999999999999999999994
Q ss_pred CCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 633 GLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 633 ~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
..|+||++++||||||+|||+|+.++.++...++
T Consensus 273 -~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~ 306 (355)
T cd03819 273 -EPEAFGRTAVEAQAMGRPVIASDHGGARETVRPG 306 (355)
T ss_pred -CCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCC
Confidence 3899999999999999999999999988755443
No 5
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.97 E-value=1.7e-28 Score=247.56 Aligned_cols=293 Identities=16% Similarity=0.143 Sum_probs=193.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC-ChhHHhcCCeEEEEcC-----CCcc-----------
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIKVLEDR-----GEPS----------- 305 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg-L~~EL~rrgIkVl~~r-----~~~s----------- 305 (679)
|||+++.++++.||+++++.+||.+|.+.||+|++++...... ...+....++++...+ ....
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 6899999999999999999999999999999999887533221 2233333334433211 1000
Q ss_pred --------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH----------HHH----HH-HHHHhhcC
Q 005746 306 --------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----------EYF----DR-AKLVLDRV 362 (679)
Q Consensus 306 --------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr----------eYf----dr-~k~vl~rv 362 (679)
.....++|+||+++...+.++- .... . .++++++|.... ..+ +. .+..+..+
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~---~~~~-~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 155 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSACVPLL---KLFS-P-SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMA 155 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchHHHHH---HHhc-C-CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCc
Confidence 1223589999998644333321 1111 1 456666663110 011 11 12346678
Q ss_pred CEEEEechhhHHHHHHHHHHhhccCCCC-cEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC
Q 005746 363 KLLVFLSESQTKQWLTWCEEEKLKLRSQ-PAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (679)
Q Consensus 363 k~LIfvSesq~k~w~~~~~eegi~l~sq-~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d 441 (679)
+.+|++|+...+.... ..+. ...+ ..|||++++.+.+.. ... ...++..+..+
T Consensus 156 d~ii~~s~~~~~~~~~---~~~~-~~~~~~~vi~n~vd~~~~~~--------------~~~--------~~~~~~~~~~~ 209 (392)
T cd03805 156 DKIVVNSNFTASVFKK---TFPS-LAKNPREVVYPCVDTDSFES--------------TSE--------DPDPGLLIPKS 209 (392)
T ss_pred eEEEEcChhHHHHHHH---Hhcc-cccCCcceeCCCcCHHHcCc--------------ccc--------cccccccccCC
Confidence 9999999988776332 1111 1222 359999998763311 000 00223345667
Q ss_pred CCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccc
Q 005746 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (679)
Q Consensus 442 ~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~ 521 (679)
+.++|+++|++.+.||++.|++|++.+.++.+.
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~----------------------------------------------- 242 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAE----------------------------------------------- 242 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhccc-----------------------------------------------
Confidence 889999999999999999999999998654310
Q ss_pred cccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCC---ChHHHHHHHHHH
Q 005746 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN---KVPYVKEILEFL 598 (679)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~sn---k~~y~k~~L~~L 598 (679)
.++++++++ |++.. +.....+.++.+
T Consensus 243 ------------------------------------------------~~~~~l~i~---G~~~~~~~~~~~~~~~l~~~ 271 (392)
T cd03805 243 ------------------------------------------------FKNVRLVIA---GGYDPRVAENVEYLEELQRL 271 (392)
T ss_pred ------------------------------------------------ccCeEEEEE---cCCCCCCchhHHHHHHHHHH
Confidence 022345644 44321 111223446667
Q ss_pred HHh-CCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 599 SQH-SNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 599 ~~~-lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+++ ++++++|.|+|+. .++..+|++||++|+||. .|+||++++||||||+|||+|++++.++...+
T Consensus 272 ~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~ 340 (392)
T cd03805 272 AEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVD 340 (392)
T ss_pred HHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhcc
Confidence 777 8999999999996 466899999999999996 89999999999999999999999998875554
No 6
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.96 E-value=1e-27 Score=229.12 Aligned_cols=288 Identities=23% Similarity=0.311 Sum_probs=205.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc---ch---------hhhcC
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---SF---------KTSMK 311 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~---sf---------k~~~k 311 (679)
||++|++.+++||++..+.+|+.+|.+.|++|.++++...+.+.+.+...+++++...... .+ ....+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 6999999999999999999999999999999999987766667777777788876533211 11 12458
Q ss_pred cCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHH---HH-----HHHHHHhhcCCEEEEechhhHHHHHHHHHHh
Q 005746 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YF-----DRAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (679)
Q Consensus 312 aDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rre---Yf-----dr~k~vl~rvk~LIfvSesq~k~w~~~~~ee 383 (679)
+|+||.+..... ++....... ....+++|.+|..... ++ ...+.+...++.++++|+...+.+. ..
T Consensus 81 ~div~~~~~~~~-~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~----~~ 154 (365)
T cd03807 81 PDVVHTWMYHAD-LYGGLAARL-AGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQ----AI 154 (365)
T ss_pred CCEEEecccccc-HHHHHHHHh-cCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHH----Hc
Confidence 999998753321 122222221 1455677777654322 11 1123344567788888888776633 23
Q ss_pred hccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHH
Q 005746 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (679)
Q Consensus 384 gi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLe 463 (679)
++.. .+..++|++++.+.+ .+... ....++++++++++.++++++|++.+.||++.+++
T Consensus 155 ~~~~-~~~~vi~~~~~~~~~--------------~~~~~------~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 213 (365)
T cd03807 155 GYPP-KKIVVIPNGVDTERF--------------SPDLD------ARARLREELGLPEDTFLIGIVARLHPQKDHATLLR 213 (365)
T ss_pred CCCh-hheeEeCCCcCHHhc--------------CCccc------chHHHHHhcCCCCCCeEEEEecccchhcCHHHHHH
Confidence 4432 467899999876422 11110 12346788999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCccc
Q 005746 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (679)
Q Consensus 464 A~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (679)
|+..+.++.++
T Consensus 214 a~~~l~~~~~~--------------------------------------------------------------------- 224 (365)
T cd03807 214 AAALLLKKFPN--------------------------------------------------------------------- 224 (365)
T ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Confidence 99988664322
Q ss_pred ccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHH-hCCCCCcEEECCCchhHHHHHH
Q 005746 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQ-HSNLSKAMLWTPATTRVASLYS 622 (679)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~-~lnLs~~V~ftG~~tdVaslys 622 (679)
.++++ +|.+... .+. +.+.. ..++.+.|.|+|..+++..+|+
T Consensus 225 -----------------------------~~l~i---~G~~~~~-~~~----~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 267 (365)
T cd03807 225 -----------------------------ARLLL---VGDGPDR-ANL----ELLALKELGLEDKVILLGERSDVPALLN 267 (365)
T ss_pred -----------------------------eEEEE---ecCCcch-hHH----HHHHHHhcCCCceEEEccccccHHHHHH
Confidence 33454 4544321 222 23333 6889999999999999999999
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 623 AADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 623 AADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
.||++|+||. .|+||++++||||||+|||+|+.++.++...+
T Consensus 268 ~adi~v~ps~--~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~ 309 (365)
T cd03807 268 ALDVFVLSSL--SEGFPNVLLEAMACGLPVVATDVGDNAELVGD 309 (365)
T ss_pred hCCEEEeCCc--cccCCcHHHHHHhcCCCEEEcCCCChHHHhhc
Confidence 9999999997 79999999999999999999999998876554
No 7
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.96 E-value=1.1e-27 Score=270.86 Aligned_cols=291 Identities=18% Similarity=0.160 Sum_probs=192.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCC------------eEEEEEe--CC-C--CCChhHHhcCCeEEEEcCCCc-c
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGA------------TVSAVVL--SK-R--GGLMPELARRKIKVLEDRGEP-S 305 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~------------~VsaVvL--s~-~--GgL~~EL~rrgIkVl~~r~~~-s 305 (679)
||++|++++..||||+.+++||.+|.+.++ .+.|+++ .. . +.+..+|.+.|++|....... .
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~~~ 362 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQAW 362 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCCcc
Confidence 799999999999999999999999999855 3444443 22 2 347788989999887542110 0
Q ss_pred --------------------------------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehh----hH
Q 005746 306 --------------------------------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN----RR 349 (679)
Q Consensus 306 --------------------------------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~----rr 349 (679)
+-...++|+||+|+..+ .++..+.+.. .+.+.|++..|.. ..
T Consensus 363 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a-~~lg~lAa~~-~gvPvIv~t~h~~~~~~~~ 440 (694)
T PRK15179 363 GGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGS-IFACALAALL-AGVPRIVLSVRTMPPVDRP 440 (694)
T ss_pred CcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcH-HHHHHHHHHH-cCCCEEEEEeCCCccccch
Confidence 01235799999987433 2333222222 2223232233321 11
Q ss_pred HHH----HHHHHHhhcCCEEEEechh--hHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHH
Q 005746 350 EYF----DRAKLVLDRVKLLVFLSES--QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (679)
Q Consensus 350 eYf----dr~k~vl~rvk~LIfvSes--q~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ 423 (679)
.++ ......+..++.++++|.+ ..+.. .+..+++ +.++.||||||+.+.+. | .+...
T Consensus 441 ~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l---~~~~g~~-~~kI~VI~NGVd~~~f~----------~--~~~~~- 503 (694)
T PRK15179 441 DRYRVEYDIIYSELLKMRGVALSSNSQFAAHRY---ADWLGVD-ERRIPVVYNGLAPLKSV----------Q--DDACT- 503 (694)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHH---HHHcCCC-hhHEEEECCCcCHHhcC----------C--Cchhh-
Confidence 111 1111123345556666544 33332 2234443 24689999999765321 0 01100
Q ss_pred HhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccc
Q 005746 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRG 503 (679)
Q Consensus 424 ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~ 503 (679)
+ .+..+ ...++++.++|+++||+++.||++.|++|++.+.++.|+
T Consensus 504 -~---~~~~~--~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~----------------------------- 548 (694)
T PRK15179 504 -A---MMAQF--DARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPK----------------------------- 548 (694)
T ss_pred -H---HHHhh--ccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcC-----------------------------
Confidence 0 01111 223566788999999999999999999999988764432
Q ss_pred ccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCC
Q 005746 504 LLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGS 583 (679)
Q Consensus 504 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs 583 (679)
+++++ +|+
T Consensus 549 ---------------------------------------------------------------------~~LvI---vG~ 556 (694)
T PRK15179 549 ---------------------------------------------------------------------VRFIM---VGG 556 (694)
T ss_pred ---------------------------------------------------------------------eEEEE---Ecc
Confidence 34564 555
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccC
Q 005746 584 KSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKD 663 (679)
Q Consensus 584 ~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~ 663 (679)
|. .++.++.+++++|+.++|+|+|+.++++.+|++|||||+||+ .|+||++++||||||+|||+|++++.++.
T Consensus 557 G~-----~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~Ei 629 (694)
T PRK15179 557 GP-----LLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEA 629 (694)
T ss_pred Cc-----chHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHH
Confidence 42 345677788889999999999999999999999999999996 89999999999999999999999998875
Q ss_pred CCCC
Q 005746 664 PTSG 667 (679)
Q Consensus 664 ~~~~ 667 (679)
..+|
T Consensus 630 V~dg 633 (694)
T PRK15179 630 VQEG 633 (694)
T ss_pred ccCC
Confidence 5443
No 8
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.96 E-value=9.1e-28 Score=244.59 Aligned_cols=289 Identities=16% Similarity=0.170 Sum_probs=193.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChh---HHh--cCCeEEEEcCCC--cch----------
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA--RRKIKVLEDRGE--PSF---------- 306 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~---EL~--rrgIkVl~~r~~--~sf---------- 306 (679)
||+++++.+..||++..+++|+..|.+.||+|.+++.....+... +.. -.|.++ ..... ..+
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999988765443311 110 113332 11110 001
Q ss_pred -hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh----HHHHHHHHHHhhcCCEEEEechhhHHHHHHHHH
Q 005746 307 -KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----REYFDRAKLVLDRVKLLVFLSESQTKQWLTWCE 381 (679)
Q Consensus 307 -k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r----reYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~ 381 (679)
....++|+||+|+.....+ ... . .....+++++.|... ...+...+.++.+++.+|+.|....
T Consensus 80 ~~~~~~~Dvv~~h~~~~~~~-~~~-~--~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-------- 147 (372)
T cd03792 80 PLLDLDADVVVIHDPQPLAL-PLF-K--KKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLPEYV-------- 147 (372)
T ss_pred ccccCCCCEEEECCCCchhH-HHh-h--hcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHHHhc--------
Confidence 0134799999997643221 111 1 121334666666432 1122223456677888888762211
Q ss_pred HhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHH
Q 005746 382 EEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (679)
Q Consensus 382 eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lL 461 (679)
..++. .+..+||+|+|....+. ..++++. +..+|+++|++++.++|+++||+.+.||++.|
T Consensus 148 ~~~~~--~~~~vipngvd~~~~~~---------~~~~~~~--------~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~l 208 (372)
T cd03792 148 PPQVP--PRKVIIPPSIDPLSGKN---------RELSPAD--------IEYILEKYGIDPERPYITQVSRFDPWKDPFGV 208 (372)
T ss_pred CCCCC--CceEEeCCCCCCCcccc---------CCCCHHH--------HHHHHHHhCCCCCCcEEEEEeccccccCcHHH
Confidence 12222 23349999998532110 1233321 34578889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCc
Q 005746 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (679)
Q Consensus 462 LeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 541 (679)
++|++.+.++.|+
T Consensus 209 l~a~~~l~~~~~~------------------------------------------------------------------- 221 (372)
T cd03792 209 IDAYRKVKERVPD------------------------------------------------------------------- 221 (372)
T ss_pred HHHHHHHHhhCCC-------------------------------------------------------------------
Confidence 9999988654332
Q ss_pred ccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc----hhH
Q 005746 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT----TRV 617 (679)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~----tdV 617 (679)
+++++ +|.+....+...+.++.+.+..++.++|.|+|.. .++
T Consensus 222 -------------------------------~~l~i---~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 222 -------------------------------PQLVL---VGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred -------------------------------CEEEE---EeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 34564 4544322222344455666567888999999875 789
Q ss_pred HHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 618 aslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+.+|++||+||+||. .|+||++++||||||+|||+|+.++..+..++|
T Consensus 268 ~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~ 315 (372)
T cd03792 268 NALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIEDG 315 (372)
T ss_pred HHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchhhcccC
Confidence 999999999999995 999999999999999999999999988766554
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=1.9e-27 Score=236.61 Aligned_cols=283 Identities=20% Similarity=0.246 Sum_probs=193.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEE--EcCC-----Cc--c------h-
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDRG-----EP--S------F- 306 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl--~~r~-----~~--s------f- 306 (679)
+||+++.|. ..||+++.+.+||++|.+.||+|.+++...+...... ..++.+. +... .. . +
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY--SPNIFFHEVEVPQYPLFQYPPYDLALASKIA 77 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh--ccCeEEEEecccccchhhcchhHHHHHHHHH
Confidence 578888764 4799999999999999999999998875432222211 2233332 1110 00 0 0
Q ss_pred --hhhcCcCEEEEcchhHH---HHHHHHHHhcCCCCccEEEeeehhh-------HHHHHHHHHHhhcCCEEEEechhhHH
Q 005746 307 --KTSMKADLVIAGSAVCA---TWIDQYITRFPAGGSQVVWWIMENR-------REYFDRAKLVLDRVKLLVFLSESQTK 374 (679)
Q Consensus 307 --k~~~kaDLVia~Sav~a---swI~qyia~~pag~s~VvWwI~E~r-------reYfdr~k~vl~rvk~LIfvSesq~k 374 (679)
....++|+||.|..... .++...+ ......++++.+|... ..+....+..+.+++.+|++|+...+
T Consensus 78 ~~i~~~~~divh~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 155 (371)
T cd04962 78 EVAKRYKLDLLHVHYAVPHAVAAYLAREI--LGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQ 155 (371)
T ss_pred HHHhcCCccEEeecccCCccHHHHHHHHh--cCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHH
Confidence 12358999999864321 1221111 1111345666666431 11222234567789999999998776
Q ss_pred HHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCC
Q 005746 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (679)
Q Consensus 375 ~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp 454 (679)
...+ .. ....++.|||++++...+ .+.. ....+++++++++..+++++|++.+
T Consensus 156 ~~~~----~~-~~~~~i~vi~n~~~~~~~--------------~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~ 208 (371)
T cd04962 156 ETYE----LF-DITKEIEVIPNFVDEDRF--------------RPKP--------DEALKRRLGAPEGEKVLIHISNFRP 208 (371)
T ss_pred HHHH----hc-CCcCCEEEecCCcCHhhc--------------CCCc--------hHHHHHhcCCCCCCeEEEEeccccc
Confidence 5332 21 223468899999875421 1111 1235678999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccccc
Q 005746 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (679)
Q Consensus 455 ~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (679)
.||++.|++|+..+.++.+
T Consensus 209 ~K~~~~li~a~~~l~~~~~------------------------------------------------------------- 227 (371)
T cd04962 209 VKRIDDVIRIFAKVRKEVP------------------------------------------------------------- 227 (371)
T ss_pred ccCHHHHHHHHHHHHhcCC-------------------------------------------------------------
Confidence 9999999999998754311
Q ss_pred ccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc
Q 005746 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (679)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~ 614 (679)
.++++ +|.+.+ .+.++.+++.+++.++|.|+|..
T Consensus 228 --------------------------------------~~l~i---~G~g~~-----~~~~~~~~~~~~~~~~v~~~g~~ 261 (371)
T cd04962 228 --------------------------------------ARLLL---VGDGPE-----RSPAERLARELGLQDDVLFLGKQ 261 (371)
T ss_pred --------------------------------------ceEEE---EcCCcC-----HHHHHHHHHHcCCCceEEEecCc
Confidence 23453 455432 23455566778999999999999
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 615 tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
++++.+|++||++|+||. .|+||++++||||||+|||+|+.++.++...+
T Consensus 262 ~~~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~ 311 (371)
T cd04962 262 DHVEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKH 311 (371)
T ss_pred ccHHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcC
Confidence 999999999999999996 99999999999999999999999998876654
No 10
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.96 E-value=8.6e-27 Score=228.51 Aligned_cols=287 Identities=18% Similarity=0.210 Sum_probs=191.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEE--EEc-CCCcc----------hhhhc
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV--LED-RGEPS----------FKTSM 310 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkV--l~~-r~~~s----------fk~~~ 310 (679)
|||++.+.++.||++..+.+|+++|.+.||+|++++..... ..... .....+ +.. +.... +-...
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGES-EVKPP-IDATIILNLNMSKNPLSFLLALWKLRKILRQF 78 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCC-Cccch-hhccceEEecccccchhhHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999998865432 22112 222222 111 11110 11235
Q ss_pred CcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH--HHHHHH-HHHhhcCCEEEEechhhHHHHHHHHHHhhccC
Q 005746 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR--EYFDRA-KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (679)
Q Consensus 311 kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr--eYfdr~-k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l 387 (679)
++|+||+++..+. ++..++... .....++...|.... .+.... +.....++.++.+|+...+.. .+.+...
T Consensus 79 ~pdiv~~~~~~~~-~~~~l~~~~-~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~ 152 (360)
T cd04951 79 KPDVVHAHMFHAN-IFARLLRLF-LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYF----IASKAFN 152 (360)
T ss_pred CCCEEEEcccchH-HHHHHHHhh-CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHH----HhccCCC
Confidence 8999999874332 222222222 223344444443311 010111 122233566677777665552 2233222
Q ss_pred CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHH
Q 005746 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (679)
Q Consensus 388 ~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~ 467 (679)
.+++.+||+|++.+.+ .+.. ..+..+++++++++++++++++|++.+.||++.+++|+..
T Consensus 153 ~~~~~~i~ng~~~~~~--------------~~~~------~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~ 212 (360)
T cd04951 153 ANKSFVVYNGIDTDRF--------------RKDP------ARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAK 212 (360)
T ss_pred cccEEEEccccchhhc--------------Ccch------HHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHH
Confidence 3578999999875422 1111 1134578899999999999999999999999999999998
Q ss_pred HHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCC
Q 005746 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (679)
Q Consensus 468 lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 547 (679)
+.++.|+
T Consensus 213 l~~~~~~------------------------------------------------------------------------- 219 (360)
T cd04951 213 LLSDYLD------------------------------------------------------------------------- 219 (360)
T ss_pred HHhhCCC-------------------------------------------------------------------------
Confidence 8764432
Q ss_pred CCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEE
Q 005746 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVY 627 (679)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~ 627 (679)
..+++ +|++. .++.++.+.+.+++.++|.|+|..+++..+|++||++
T Consensus 220 -------------------------~~l~i---~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~ 266 (360)
T cd04951 220 -------------------------IKLLI---AGDGP-----LRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLF 266 (360)
T ss_pred -------------------------eEEEE---EcCCC-----cHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceE
Confidence 23454 45543 2234555666789999999999999999999999999
Q ss_pred EEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 628 VINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 628 VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
|+||. .|+||++++||||+|+|||+|+.++.++-..+
T Consensus 267 v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~ 303 (360)
T cd04951 267 VLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD 303 (360)
T ss_pred Eeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC
Confidence 99997 89999999999999999999999998875544
No 11
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.96 E-value=8.8e-27 Score=240.82 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=192.3
Q ss_pred eEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCC--------cc--------
Q 005746 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE--------PS-------- 305 (679)
Q Consensus 244 KILlI~heLs--mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~--------~s-------- 305 (679)
||++|.+... .||+++.+.+||++|.+.||+|++++...++....+....+++|...+.. ..
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 5777777443 68999999999999999999999887543333333344456776543210 00
Q ss_pred --hhhhcCcCEEEEcchhHH-HHHHHHHHhcCCCCccEEEeeehhh------HHHHH-HHHHHhhcCCEEEEechhhHHH
Q 005746 306 --FKTSMKADLVIAGSAVCA-TWIDQYITRFPAGGSQVVWWIMENR------REYFD-RAKLVLDRVKLLVFLSESQTKQ 375 (679)
Q Consensus 306 --fk~~~kaDLVia~Sav~a-swI~qyia~~pag~s~VvWwI~E~r------reYfd-r~k~vl~rvk~LIfvSesq~k~ 375 (679)
+....++|+||+++.... .+....++. . ...+++|..|... ..+.. ..+..+..++.+|++|+...+.
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~-~-~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 158 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHAR-T-MGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKEN 158 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhh-h-cCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhH
Confidence 112358999999974321 111111111 1 1234565555421 01111 1234467789999999987654
Q ss_pred HHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCC
Q 005746 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (679)
Q Consensus 376 w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~ 455 (679)
. ....++. ++++.+||+|+|.+.+. +.. + ..+++.++++++|++.+.
T Consensus 159 ~---~~~~~~~-~~k~~vi~ngvd~~~f~--------------~~~---------~------~~~~~~~~i~~~grl~~~ 205 (398)
T cd03796 159 T---VLRASLD-PERVSVIPNAVDSSDFT--------------PDP---------S------KRDNDKITIVVISRLVYR 205 (398)
T ss_pred H---HHHhCCC-hhhEEEEcCccCHHHcC--------------CCc---------c------cCCCCceEEEEEeccchh
Confidence 2 1223443 34688999999865321 110 0 024578899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccc
Q 005746 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (679)
Q Consensus 456 KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (679)
||++.|++|++.+.++.|+
T Consensus 206 Kg~~~li~a~~~l~~~~~~------------------------------------------------------------- 224 (398)
T cd03796 206 KGIDLLVGIIPEICKKHPN------------------------------------------------------------- 224 (398)
T ss_pred cCHHHHHHHHHHHHhhCCC-------------------------------------------------------------
Confidence 9999999999987654332
Q ss_pred cCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC--
Q 005746 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA-- 613 (679)
Q Consensus 536 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~-- 613 (679)
.++++ +|.+. .++.++++.+.+++.++|.|+|.
T Consensus 225 -------------------------------------~~l~i---~G~g~-----~~~~l~~~~~~~~l~~~v~~~G~~~ 259 (398)
T cd03796 225 -------------------------------------VRFII---GGDGP-----KRILLEEMREKYNLQDRVELLGAVP 259 (398)
T ss_pred -------------------------------------EEEEE---EeCCc-----hHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 34554 45442 24456677888999999999998
Q ss_pred chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCCC
Q 005746 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSGT 668 (679)
Q Consensus 614 ~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~~ 668 (679)
.+++..+|++||++|+||. .|+||++++||||||+|||+|++|+..+-..+|.
T Consensus 260 ~~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~ 312 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM 312 (398)
T ss_pred HHHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeCCc
Confidence 4799999999999999995 8999999999999999999999999988776664
No 12
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.95 E-value=5.3e-26 Score=215.03 Aligned_cols=284 Identities=21% Similarity=0.286 Sum_probs=194.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhc----CCeEEEEcCCCc---------chhhhc
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR----RKIKVLEDRGEP---------SFKTSM 310 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~r----rgIkVl~~r~~~---------sfk~~~ 310 (679)
||+++.+....||+++.+.+|+.+|.+.|++|.+++............. ............ .+....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999886654432111110 001111111100 011235
Q ss_pred CcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHH-------HHHHHhhcCCEEEEechhhHHHHHHHHHHh
Q 005746 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------RAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (679)
Q Consensus 311 kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfd-------r~k~vl~rvk~LIfvSesq~k~w~~~~~ee 383 (679)
++|+||.+.. ...++...+.... ..++++|+|......+. ..+..+..++.++++|+...+..... .
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~---~ 154 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARL--GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKL---L 154 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhc--CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHh---h
Confidence 7999999875 2223322332222 45677788765432221 13455678899999999988774332 1
Q ss_pred hccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHH
Q 005746 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (679)
Q Consensus 384 gi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLe 463 (679)
+. ...+..+||++++.+.. .+... ... .++.+++.+.++++|++.+.||++.+++
T Consensus 155 ~~-~~~~~~vi~~~~~~~~~--------------~~~~~-------~~~---~~~~~~~~~~i~~~g~~~~~k~~~~~i~ 209 (353)
T cd03811 155 GI-PPDKIEVIYNPIDIEEI--------------RALAE-------EPL---ELGIPPDGPVILAVGRLSPQKGFDTLIR 209 (353)
T ss_pred cC-CccccEEecCCcChhhc--------------Ccccc-------hhh---hcCCCCCceEEEEEecchhhcChHHHHH
Confidence 21 13468999999976421 11100 000 4567788899999999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCccc
Q 005746 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (679)
Q Consensus 464 A~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (679)
|++.+.++.++
T Consensus 210 ~~~~l~~~~~~--------------------------------------------------------------------- 220 (353)
T cd03811 210 AFALLRKEGPD--------------------------------------------------------------------- 220 (353)
T ss_pred HHHHhhhcCCC---------------------------------------------------------------------
Confidence 99988654322
Q ss_pred ccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHH
Q 005746 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (679)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysA 623 (679)
..+++ +|.+. ....++.+.+.+++.+.|.|+|..+++.++|+.
T Consensus 221 -----------------------------~~l~i---~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 221 -----------------------------ARLVI---LGDGP-----LREELEALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred -----------------------------ceEEE---EcCCc-----cHHHHHHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 23454 45432 122344566678999999999999999999999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 624 ADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 624 ADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
||++|+||. .|+||.+++||||+|+|||+|+.++..+...+
T Consensus 264 ~d~~i~ps~--~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~ 304 (353)
T cd03811 264 ADLFVLSSR--YEGFPNVLLEAMALGTPVVATDCPGPREILED 304 (353)
T ss_pred CCEEEeCcc--cCCCCcHHHHHHHhCCCEEEcCCCChHHHhcC
Confidence 999999996 79999999999999999999999988875443
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.95 E-value=1.6e-25 Score=229.21 Aligned_cols=283 Identities=19% Similarity=0.224 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhH-HhcCCeEEEEcCC-----Cc---------ch--------hh--
Q 005746 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-LARRKIKVLEDRG-----EP---------SF--------KT-- 308 (679)
Q Consensus 254 mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~E-L~rrgIkVl~~r~-----~~---------sf--------k~-- 308 (679)
.||++.++.+||.+|.+.||+|++++........+. -...+++++..+. .. .| ..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 599999999999999999999999875432211111 1134777765321 00 01 01
Q ss_pred hcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh---HHH-----------HHH-HHHHhhcCCEEEEechhhH
Q 005746 309 SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---REY-----------FDR-AKLVLDRVKLLVFLSESQT 373 (679)
Q Consensus 309 ~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r---reY-----------fdr-~k~vl~rvk~LIfvSesq~ 373 (679)
..++|+||+|.... .|+..++... .+ .++++.+|... ..| ... .+.++..++.+|++|+...
T Consensus 99 ~~~~Diih~h~~~~-~~~~~~~~~~-~~-~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVGWLLRDR-WG-VPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCCeEEechHHH-HHHHHHHHHh-cC-CCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHH
Confidence 13699999997433 3333333221 12 23444444321 000 010 1345678899999999877
Q ss_pred HHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccC
Q 005746 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (679)
Q Consensus 374 k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrIn 453 (679)
+.+.. ..+.. +.++.+||+|++.+.+ .+. .+...++++|+++++++|+++|++.
T Consensus 176 ~~~~~---~~~~~-~~ki~vi~ngvd~~~~--------------~~~--------~~~~~~~~~~~~~~~~~i~~~G~l~ 229 (405)
T TIGR03449 176 RDLVR---HYDAD-PDRIDVVAPGADLERF--------------RPG--------DRATERARLGLPLDTKVVAFVGRIQ 229 (405)
T ss_pred HHHHH---HcCCC-hhhEEEECCCcCHHHc--------------CCC--------cHHHHHHhcCCCCCCcEEEEecCCC
Confidence 76432 22332 2467899999986532 111 0234577899998999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccc
Q 005746 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (679)
Q Consensus 454 p~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (679)
+.||++.|++|++.+.++.|+
T Consensus 230 ~~K~~~~li~a~~~l~~~~~~----------------------------------------------------------- 250 (405)
T TIGR03449 230 PLKAPDVLLRAVAELLDRDPD----------------------------------------------------------- 250 (405)
T ss_pred cccCHHHHHHHHHHHHhhCCC-----------------------------------------------------------
Confidence 999999999999988765442
Q ss_pred cccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCCh-HHHHHHHHHHHHhCCCCCcEEECC
Q 005746 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV-PYVKEILEFLSQHSNLSKAMLWTP 612 (679)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~-~y~k~~L~~L~~~lnLs~~V~ftG 612 (679)
.+.+++++| ...+.. + ..+.++.+++.+++.++|.|+|
T Consensus 251 -------------------------------------~~~~l~ivG---~~~~~g~~-~~~~l~~~~~~~~l~~~v~~~g 289 (405)
T TIGR03449 251 -------------------------------------RNLRVIVVG---GPSGSGLA-TPDALIELAAELGIADRVRFLP 289 (405)
T ss_pred -------------------------------------cceEEEEEe---CCCCCcch-HHHHHHHHHHHcCCCceEEECC
Confidence 013456555 211111 2 2345667778899999999999
Q ss_pred Cc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 613 AT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 613 ~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
.. ++++.+|++||++|+||. .|+||++++||||+|+|||+|+.++..+..++|
T Consensus 290 ~~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~ 344 (405)
T TIGR03449 290 PRPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADG 344 (405)
T ss_pred CCCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccC
Confidence 84 799999999999999996 899999999999999999999999988755543
No 14
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.94 E-value=2.4e-25 Score=237.69 Aligned_cols=309 Identities=16% Similarity=0.149 Sum_probs=200.9
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhH---------H----------hcCCeEEEE
Q 005746 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---------L----------ARRKIKVLE 299 (679)
Q Consensus 243 rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~E---------L----------~rrgIkVl~ 299 (679)
|||++|+.|.. .||....+-+|+++|.+.||+|.|++.. .+.+... + ...|++|+-
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG-YPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYL 79 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC-CcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEE
Confidence 68999998853 6899999999999999999999988744 3333211 1 124677652
Q ss_pred cC-------CC----c-c------hh---------hhcCcCEEEEcchhHHHHHHHHHHhc---CCCCccEEEeeehhhH
Q 005746 300 DR-------GE----P-S------FK---------TSMKADLVIAGSAVCATWIDQYITRF---PAGGSQVVWWIMENRR 349 (679)
Q Consensus 300 ~r-------~~----~-s------fk---------~~~kaDLVia~Sav~aswI~qyia~~---pag~s~VvWwI~E~rr 349 (679)
.. .. . . |. ...++|+||+|...++ ++..++... .....+++..+|....
T Consensus 80 v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~-~~~~~l~~~~~~~~~~~~~v~TiH~~~~ 158 (466)
T PRK00654 80 IDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTG-LIPALLKEKYWRGYPDIKTVFTIHNLAY 158 (466)
T ss_pred EeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHH-HHHHHHHHhhhccCCCCCEEEEcCCCcC
Confidence 11 10 0 0 11 1138999999964432 333333211 1112345555663210
Q ss_pred ----------------HHH-----------HHHHHHhhcCCEEEEechhhHHHHHHHHH------HhhccCCCCcEEeeC
Q 005746 350 ----------------EYF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCE------EEKLKLRSQPAVVPL 396 (679)
Q Consensus 350 ----------------eYf-----------dr~k~vl~rvk~LIfvSesq~k~w~~~~~------eegi~l~sq~~VVP~ 396 (679)
.++ ...+..+..++.+|++|+..++...+... ..+.. ..++.+|||
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~-~~ki~vI~N 237 (466)
T PRK00654 159 QGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRAR-SGKLSGILN 237 (466)
T ss_pred CCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhc-ccCceEecC
Confidence 010 11133467789999999988776432100 01111 346899999
Q ss_pred CCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC-CCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCC
Q 005746 397 SVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (679)
Q Consensus 397 gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d-~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~ 475 (679)
|||.+.+.... ...-...|+++.+. .+...++.+|+++|+++ +.++|+++||+.++||+++|++|++.+.++
T Consensus 238 Gid~~~~~p~~--~~~~~~~~~~~~~~-~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~---- 310 (466)
T PRK00654 238 GIDYDIWNPET--DPLLAANYSADDLE-GKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ---- 310 (466)
T ss_pred CCCccccCCcc--CcccccccChhhhh-chHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc----
Confidence 99987543211 00011245555443 23345677899999986 678999999999999999999999987542
Q ss_pred chhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCC
Q 005746 476 DDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGS 555 (679)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 555 (679)
T Consensus 311 -------------------------------------------------------------------------------- 310 (466)
T PRK00654 311 -------------------------------------------------------------------------------- 310 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEE-ECCCchh-HHHHHHHcCEEEEcCCC
Q 005746 556 GHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR-VASLYSAADVYVINSQG 633 (679)
Q Consensus 556 ~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~-ftG~~td-VaslysAADV~VlpSq~ 633 (679)
+++++++ |++. +..++.++.++++++ .+|. ++|+..+ ++.+|++||+||+||.
T Consensus 311 ----------------~~~lviv---G~g~---~~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~- 365 (466)
T PRK00654 311 ----------------GGQLVLL---GTGD---PELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR- 365 (466)
T ss_pred ----------------CCEEEEE---ecCc---HHHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC-
Confidence 1234544 4431 124556777777665 3454 6788655 5689999999999996
Q ss_pred CCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 634 LGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 634 ~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
.|+||++++||||||+|||+|++||..+-..+|
T Consensus 366 -~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~ 398 (466)
T PRK00654 366 -FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDY 398 (466)
T ss_pred -CCCchHHHHHHHHCCCCEEEeCCCCccceeecC
Confidence 999999999999999999999999998866554
No 15
>PLN02316 synthase/transferase
Probab=99.94 E-value=5.3e-25 Score=256.53 Aligned_cols=310 Identities=12% Similarity=0.109 Sum_probs=205.4
Q ss_pred CCeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChh----HHh------------------cCCe
Q 005746 242 SRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP----ELA------------------RRKI 295 (679)
Q Consensus 242 ~rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~----EL~------------------rrgI 295 (679)
.+|||+|.-|.. .||---++-+|+.+|++.||+|.|++...+ .+.. .+. ..|+
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~-~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV 665 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD-CLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGL 665 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc-ccchhhcccceEEEEeccCCEEEEEEEEEECCc
Confidence 379999998886 478888999999999999999998875433 2110 010 0244
Q ss_pred EEEEcCCC--c--------------ch---h---------hhcCcCEEEEcchhHHHHHHHHHHh----cCCCCccEEEe
Q 005746 296 KVLEDRGE--P--------------SF---K---------TSMKADLVIAGSAVCATWIDQYITR----FPAGGSQVVWW 343 (679)
Q Consensus 296 kVl~~r~~--~--------------sf---k---------~~~kaDLVia~Sav~aswI~qyia~----~pag~s~VvWw 343 (679)
.++-.... . .| . ...+|||||+|.... .++..++.. ......+++..
T Consensus 666 ~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~t-alva~llk~~~~~~~~~~~p~V~T 744 (1036)
T PLN02316 666 SVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSS-APVAWLFKDHYAHYGLSKARVVFT 744 (1036)
T ss_pred EEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChH-HHHHHHHHHhhhhhccCCCCEEEE
Confidence 44311100 0 01 0 113799999996432 233333321 11223456767
Q ss_pred eehhhHHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhccC-CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhH
Q 005746 344 IMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (679)
Q Consensus 344 I~E~rreYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l-~sq~~VVP~gVndElafvagi~~slntp~fspek~ 422 (679)
||..... ....+..+.+++.++++|+..++.... ...+.. ..++.+||||||.+.+...... .+ ...|+++.+
T Consensus 745 iHnl~~~-~n~lk~~l~~AD~ViTVS~tya~EI~~---~~~l~~~~~Kl~vI~NGID~~~w~P~tD~-~l-p~~y~~~~~ 818 (1036)
T PLN02316 745 IHNLEFG-ANHIGKAMAYADKATTVSPTYSREVSG---NSAIAPHLYKFHGILNGIDPDIWDPYNDN-FI-PVPYTSENV 818 (1036)
T ss_pred eCCcccc-hhHHHHHHHHCCEEEeCCHHHHHHHHh---ccCcccccCCEEEEECCccccccCCcccc-cc-cccCCchhh
Confidence 7743210 111345678899999999987765321 112222 2478999999997643221100 00 112444443
Q ss_pred HHhhHHHHHHHHHHcCCCC-CCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccc
Q 005746 423 REKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRG 501 (679)
Q Consensus 423 ~ekr~~lR~svRkelGL~d-~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~ 501 (679)
.+.+...+..+|+++||++ +.++|++||||.++||+++|++|+..+++.
T Consensus 819 ~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~------------------------------ 868 (1036)
T PLN02316 819 VEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER------------------------------ 868 (1036)
T ss_pred hhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc------------------------------
Confidence 3333445677899999985 679999999999999999999999987642
Q ss_pred ccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEee
Q 005746 502 RGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSV 581 (679)
Q Consensus 502 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~V 581 (679)
+++++| +
T Consensus 869 ----------------------------------------------------------------------~~qlVI---v 875 (1036)
T PLN02316 869 ----------------------------------------------------------------------NGQVVL---L 875 (1036)
T ss_pred ----------------------------------------------------------------------CcEEEE---E
Confidence 123454 4
Q ss_pred CCCCCChHHHHHHHHHHHHhCCC--CCcEEECCCchhH--HHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 582 GSKSNKVPYVKEILEFLSQHSNL--SKAMLWTPATTRV--ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 582 Gs~snk~~y~k~~L~~L~~~lnL--s~~V~ftG~~tdV--aslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
|+|.+ +.++..++.+++.+++ +++|.|++..++. ..+|++||+||+||+ .|+||++.+||||||+|+|++++
T Consensus 876 G~Gpd--~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~v 951 (1036)
T PLN02316 876 GSAPD--PRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKT 951 (1036)
T ss_pred eCCCC--HHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcC
Confidence 55532 2346677888888866 6799998776654 379999999999996 99999999999999999999999
Q ss_pred CCCccCCCC
Q 005746 658 ELSRKDPTS 666 (679)
Q Consensus 658 g~~r~~~~~ 666 (679)
||.++-+.+
T Consensus 952 GGL~DtV~d 960 (1036)
T PLN02316 952 GGLFDTVFD 960 (1036)
T ss_pred CCcHhhccc
Confidence 999986554
No 16
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.94 E-value=3e-25 Score=213.06 Aligned_cols=285 Identities=20% Similarity=0.211 Sum_probs=186.2
Q ss_pred eEEEEeCCC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEE--EE-----cCC------Ccc---
Q 005746 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV--LE-----DRG------EPS--- 305 (679)
Q Consensus 244 KILlI~heL--smgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkV--l~-----~r~------~~s--- 305 (679)
|||+|.+.+ ..||++..+++||.+|.+.||+|++++....... .......+.. .. ... ...
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDP-LLVALNGVPVKLFSINVAYGLNLARYLFPPSLLA 79 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCcc-chhhccCceeeecccchhhhhhhhhhccChhHHH
Confidence 689999998 6899999999999999999999999876544322 1111111000 00 000 000
Q ss_pred --hhhhcCcCEEEEcchhH-HHHHHHHHHhcCCCCccEEEeeehhhHH-------------HHHHHHHHhhcCCEEEEec
Q 005746 306 --FKTSMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENRRE-------------YFDRAKLVLDRVKLLVFLS 369 (679)
Q Consensus 306 --fk~~~kaDLVia~Sav~-aswI~qyia~~pag~s~VvWwI~E~rre-------------Yfdr~k~vl~rvk~LIfvS 369 (679)
.....++|+|++++... ..+....... ....++++++|..-.. ++...+.++...+.+++.|
T Consensus 80 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 157 (375)
T cd03821 80 WLRLNIREADIVHVHGLWSYPSLAAARAAR--KYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATS 157 (375)
T ss_pred HHHHhCCCCCEEEEecccchHHHHHHHHHH--HhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECC
Confidence 01235799999886311 1111111111 1122455555532111 1111234456677888877
Q ss_pred hhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEE
Q 005746 370 ESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL 449 (679)
Q Consensus 370 esq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsv 449 (679)
+....... ... ...+..+||++++.+. +.+... ... |++++.+++.++++++
T Consensus 158 ~~~~~~~~----~~~--~~~~~~vi~~~~~~~~--------------~~~~~~-------~~~-~~~~~~~~~~~~i~~~ 209 (375)
T cd03821 158 EQEAAEIR----RLG--LKAPIAVIPNGVDIPP--------------FAALPS-------RGR-RRKFPILPDKRIILFL 209 (375)
T ss_pred HHHHHHHH----hhC--CcccEEEcCCCcChhc--------------cCcchh-------hhh-hhhccCCCCCcEEEEE
Confidence 55443321 111 2346899999987542 211110 111 7788889999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccc
Q 005746 450 SSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLN 529 (679)
Q Consensus 450 GrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (679)
|++.+.||++.+++|+..+.++.++
T Consensus 210 G~~~~~K~~~~li~a~~~l~~~~~~------------------------------------------------------- 234 (375)
T cd03821 210 GRLHPKKGLDLLIEAFAKLAERFPD------------------------------------------------------- 234 (375)
T ss_pred eCcchhcCHHHHHHHHHHhhhhcCC-------------------------------------------------------
Confidence 9999999999999999988764332
Q ss_pred cccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEE
Q 005746 530 EPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (679)
Q Consensus 530 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ 609 (679)
..+++ +|.+.. .....++.+++++++.++|.
T Consensus 235 -------------------------------------------~~l~i---~G~~~~---~~~~~~~~~~~~~~~~~~v~ 265 (375)
T cd03821 235 -------------------------------------------WHLVI---AGPDEG---GYRAELKQIAAALGLEDRVT 265 (375)
T ss_pred -------------------------------------------eEEEE---ECCCCc---chHHHHHHHHHhcCccceEE
Confidence 23454 454321 23445556667789999999
Q ss_pred ECCCch--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCC
Q 005746 610 WTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPT 665 (679)
Q Consensus 610 ftG~~t--dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~ 665 (679)
|+|+.+ ++.++|++||++|+||. .|+||++++||||||+|||+|+.++..+...
T Consensus 266 ~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~ 321 (375)
T cd03821 266 FTGMLYGEDKAAALADADLFVLPSH--SENFGIVVAEALACGTPVVTTDKVPWQELIE 321 (375)
T ss_pred EcCCCChHHHHHHHhhCCEEEeccc--cCCCCcHHHHHHhcCCCEEEcCCCCHHHHhh
Confidence 999976 99999999999999996 7999999999999999999999998776443
No 17
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.94 E-value=2.5e-25 Score=227.08 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=179.2
Q ss_pred CeEEEEeCCCC-CCCHHHHHHHHHHHHHHC--CCeEEEEEeCCCCCChhHHhcCCeE----EEEc---CCCc------ch
Q 005746 243 RKFILIFHELS-MTGAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELARRKIK----VLED---RGEP------SF 306 (679)
Q Consensus 243 rKILlI~heLs-mgGAplsmmeLAteL~s~--G~~VsaVvLs~~GgL~~EL~rrgIk----Vl~~---r~~~------sf 306 (679)
|||+++.+.+. .||+++.+++|+++|.+. |++|.+++.... .....+...++. .... +... .+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDK-MDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCC-CChHHHHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 68999988774 699999999999999999 788877664332 122233333211 1111 0000 11
Q ss_pred hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhcc
Q 005746 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK 386 (679)
Q Consensus 307 k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~ 386 (679)
....++|+||+++..+. |+.............+++|.|-............+..++.++++|+...+.. .+.++.
T Consensus 80 l~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~----~~~~~~ 154 (359)
T PRK09922 80 LKETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQM----MARGIS 154 (359)
T ss_pred HHhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHH----HHcCCC
Confidence 23468999999986543 3333332221111234555553211100000111367899999999887663 334544
Q ss_pred CCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccC--CCCCHHHHHHH
Q 005746 387 LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN--PGKGQLLLVES 464 (679)
Q Consensus 387 l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrIn--p~KGq~lLLeA 464 (679)
++++.+|||+++.+.+.. | .. -.+++.+++++|++. +.||++.+++|
T Consensus 155 -~~ki~vi~N~id~~~~~~---------~----~~-----------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a 203 (359)
T PRK09922 155 -AQRISVIYNPVEIKTIII---------P----PP-----------------ERDKPAVFLYVGRLKFEGQKNVKELFDG 203 (359)
T ss_pred -HHHEEEEcCCCCHHHccC---------C----Cc-----------------ccCCCcEEEEEEEEecccCcCHHHHHHH
Confidence 246899999997432110 0 00 013467899999996 56999999999
Q ss_pred HHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccc
Q 005746 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (679)
Q Consensus 465 ~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (679)
++.+.+
T Consensus 204 ~~~~~~-------------------------------------------------------------------------- 209 (359)
T PRK09922 204 LSQTTG-------------------------------------------------------------------------- 209 (359)
T ss_pred HHhhCC--------------------------------------------------------------------------
Confidence 886521
Q ss_pred cCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCch----hHHHH
Q 005746 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT----RVASL 620 (679)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~t----dVasl 620 (679)
+.++++ +|.|. .++.++.++++++++++|.|+|+++ .++.+
T Consensus 210 ---------------------------~~~l~i---vG~g~-----~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 210 ---------------------------EWQLHI---IGDGS-----DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred ---------------------------CeEEEE---EeCCc-----cHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 123453 55553 2445677888899999999999864 46778
Q ss_pred HHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC-CCCCccCCCC
Q 005746 621 YSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ-IELSRKDPTS 666 (679)
Q Consensus 621 ysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~-~g~~r~~~~~ 666 (679)
|+.||++|+||. .|+||++++||||||+|||+|+ .++..+-..+
T Consensus 255 ~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~ 299 (359)
T PRK09922 255 IKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKP 299 (359)
T ss_pred HhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccC
Confidence 888999999996 8999999999999999999999 8887765544
No 18
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.94 E-value=2.3e-25 Score=217.53 Aligned_cols=265 Identities=18% Similarity=0.099 Sum_probs=175.5
Q ss_pred CeEEEEeCCC------CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEc--CCC-----------
Q 005746 243 RKFILIFHEL------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RGE----------- 303 (679)
Q Consensus 243 rKILlI~heL------smgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~--r~~----------- 303 (679)
|||++|.+.+ ..||+++.+.+|+.+|.+.||+|.+++...... ...+.......... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKT-AAPLVPVVPEPLRLDAPGRDRAEAEALALA 79 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCc-ccceeeccCCCcccccchhhHhhHHHHHHH
Confidence 6999999988 789999999999999999999999887554321 11111110000000 000
Q ss_pred cchhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHh
Q 005746 304 PSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (679)
Q Consensus 304 ~sfk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~ee 383 (679)
..+....++|+||+++.....+ +. .....++++++|.....+...........+.++++|+.+.+.+...
T Consensus 80 ~~~~~~~~~Divh~~~~~~~~~----~~--~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---- 149 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLPLP----FA--RPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL---- 149 (335)
T ss_pred HHHHhcCCCCEEEecCcccchh----hh--cccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc----
Confidence 0111246799999998654432 11 1223356777776543332222333456678899999887764321
Q ss_pred hccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHH
Q 005746 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (679)
Q Consensus 384 gi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLe 463 (679)
.+..+||+|++.+.+ .+ .+..+..|+++|++.+.||++.|++
T Consensus 150 -----~~~~vi~ngvd~~~~--------------~~-------------------~~~~~~~i~~~Gr~~~~Kg~~~li~ 191 (335)
T cd03802 150 -----PWVATVHNGIDLDDY--------------PF-------------------RGPKGDYLLFLGRISPEKGPHLAIR 191 (335)
T ss_pred -----cccEEecCCcChhhC--------------CC-------------------CCCCCCEEEEEEeeccccCHHHHHH
Confidence 468899999976532 11 0123457899999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCccc
Q 005746 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (679)
Q Consensus 464 A~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (679)
+++.. +
T Consensus 192 ~~~~~-----~--------------------------------------------------------------------- 197 (335)
T cd03802 192 AARRA-----G--------------------------------------------------------------------- 197 (335)
T ss_pred HHHhc-----C---------------------------------------------------------------------
Confidence 86421 1
Q ss_pred ccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc--hhHHHHH
Q 005746 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLY 621 (679)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVasly 621 (679)
..+++ +|.+. ...+......... .+.++|.|+|+. +++.++|
T Consensus 198 -----------------------------~~l~i---~G~~~-~~~~~~~~~~~~~---~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 198 -----------------------------IPLKL---AGPVS-DPDYFYREIAPEL---LDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred -----------------------------CeEEE---EeCCC-CHHHHHHHHHHhc---ccCCcEEEeCCCCHHHHHHHH
Confidence 12354 44442 2233333322221 167899999995 4678999
Q ss_pred HHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 622 sAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
++||++|+||. ..|+||++++||||||+|||+|+.|+.++-..+|
T Consensus 242 ~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~ 286 (335)
T cd03802 242 GNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDG 286 (335)
T ss_pred HhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeCC
Confidence 99999999997 4699999999999999999999999998866655
No 19
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.94 E-value=5.6e-25 Score=232.55 Aligned_cols=289 Identities=16% Similarity=0.184 Sum_probs=180.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCC--eEEEEEeCCCC-----CChhHHh--cCCeEEEEcCCCc----c--------------
Q 005746 253 SMTGAPLSMMELATELLSCGA--TVSAVVLSKRG-----GLMPELA--RRKIKVLEDRGEP----S-------------- 305 (679)
Q Consensus 253 smgGAplsmmeLAteL~s~G~--~VsaVvLs~~G-----gL~~EL~--rrgIkVl~~r~~~----s-------------- 305 (679)
..||++.++.+||.+|.+.|| +|++++....+ ++...+. ..|++|+..+... +
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 358999999999999999997 99988754322 2211222 3577776432210 0
Q ss_pred hh---h--hcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh----HH--------------H--HH---HHHH
Q 005746 306 FK---T--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----RE--------------Y--FD---RAKL 357 (679)
Q Consensus 306 fk---~--~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r----re--------------Y--fd---r~k~ 357 (679)
+. . ..++|+||+|+..+ .++...++.. .+. +++..+|... .. | +. ..+.
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~~-~~~~~~~~~~-~~~-p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYADA-GYVGARLSRL-LGV-PLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchhH-HHHHHHHHHH-hCC-CEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 00 1 12699999997432 2333222221 122 2343444210 00 0 11 1234
Q ss_pred HhhcCCEEEEechhhHHHHHHHHHH-hhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHH
Q 005746 358 VLDRVKLLVFLSESQTKQWLTWCEE-EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (679)
Q Consensus 358 vl~rvk~LIfvSesq~k~w~~~~~e-egi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRke 436 (679)
++.+++.+|++|...... .... .++. ++++.|||||||.+.+... -..+ .+...+. .+++
T Consensus 181 ~~~~ad~ii~~s~~~~~~---~~~~~~~~~-~~ki~vIpnGvd~~~f~~~----------~~~~----~~~~~~~-~~~~ 241 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEE---QYALYDSYQ-PERMQVIPPGVDLSRFYPP----------QSSE----ETSEIDN-LLAP 241 (439)
T ss_pred HHHhCCEEEECCHHHHHH---HHHhccCCC-ccceEEECCCcChhhcCCC----------Cccc----cchhHHH-HHHh
Confidence 677889999987543221 1111 1333 3578999999987643211 0000 0111222 2344
Q ss_pred cCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccc
Q 005746 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (679)
Q Consensus 437 lGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~ 516 (679)
+++++++.+|+++||+.+.||+++||+|++.+.+....
T Consensus 242 ~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~------------------------------------------ 279 (439)
T TIGR02472 242 FLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEM------------------------------------------ 279 (439)
T ss_pred hccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhh------------------------------------------
Confidence 66777888999999999999999999999864211000
Q ss_pred ccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCCh-------H
Q 005746 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV-------P 589 (679)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~-------~ 589 (679)
+ .+++| +|++.... .
T Consensus 280 ------------------------------------------------------~--~l~li--~G~g~~~~~l~~~~~~ 301 (439)
T TIGR02472 280 ------------------------------------------------------A--NLVLV--LGCRDDIRKMESQQRE 301 (439)
T ss_pred ------------------------------------------------------c--cEEEE--eCCccccccccHHHHH
Confidence 0 11222 45543221 1
Q ss_pred HHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHc----CEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccC
Q 005746 590 YVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAA----DVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKD 663 (679)
Q Consensus 590 y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAA----DV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~ 663 (679)
|. +.+..++++.++.++|.|+|+ .++++.+|++| |+||+||. .|+||+|++||||||+|||+|++|+.++-
T Consensus 302 ~~-~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~ei 378 (439)
T TIGR02472 302 VL-QKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDI 378 (439)
T ss_pred HH-HHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHH
Confidence 22 234456778999999999996 68999999988 99999996 89999999999999999999999998875
Q ss_pred CCC
Q 005746 664 PTS 666 (679)
Q Consensus 664 ~~~ 666 (679)
..+
T Consensus 379 v~~ 381 (439)
T TIGR02472 379 IAN 381 (439)
T ss_pred hcC
Confidence 544
No 20
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.94 E-value=1.9e-24 Score=223.56 Aligned_cols=282 Identities=17% Similarity=0.159 Sum_probs=188.4
Q ss_pred CeEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCC-----------hhHHhcCCeEEEEcCCC----c-
Q 005746 243 RKFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGL-----------MPELARRKIKVLEDRGE----P- 304 (679)
Q Consensus 243 rKILlI~heLs--mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL-----------~~EL~rrgIkVl~~r~~----~- 304 (679)
|||++|.+... .+|++.++.+|+++|.+.||+|++++.....+. ..+-...+++|+..+.. .
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 58999987653 589999999999999999999999985531110 01111347777643211 0
Q ss_pred ---------ch--------hh--hcCcCEEEEcchhH-HHHHHHHHHhcCCCCccEEEeeehhhH-----------HHHH
Q 005746 305 ---------SF--------KT--SMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENRR-----------EYFD 353 (679)
Q Consensus 305 ---------sf--------k~--~~kaDLVia~Sav~-aswI~qyia~~pag~s~VvWwI~E~rr-----------eYfd 353 (679)
+| .. ..++|+||+++... ...+..+++.. .+ .++++.+++... ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~-~~-~~~v~~~~d~~~~~~~~~~~~~~~~~~ 158 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARL-SG-ARTWLHIQDYEVDAAFGLGLLKGGKVA 158 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHh-hC-CCEEEEeccCCHHHHHHhCCccCcHHH
Confidence 00 11 15789999976321 11111112211 11 234445554221 0111
Q ss_pred -----HHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 005746 354 -----RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (679)
Q Consensus 354 -----r~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~ 428 (679)
..+.++..++.+|++|+...+.. ...++. ..++.|||||++.+.+. +... .
T Consensus 159 ~~~~~~~~~~~~~ad~ii~~S~~~~~~~----~~~~~~-~~~i~vi~ngvd~~~~~--------------~~~~-----~ 214 (412)
T PRK10307 159 RLATAFERSLLRRFDNVSTISRSMMNKA----REKGVA-AEKVIFFPNWSEVARFQ--------------PVAD-----A 214 (412)
T ss_pred HHHHHHHHHHHhhCCEEEecCHHHHHHH----HHcCCC-cccEEEECCCcCHhhcC--------------CCCc-----c
Confidence 12345677999999999888763 334443 34688999999865321 1100 0
Q ss_pred HHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccc
Q 005746 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (679)
Q Consensus 429 lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~ 508 (679)
.+..+++++|++++.++++++|++.+.||++.|++|++.+. +.
T Consensus 215 ~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~-~~------------------------------------ 257 (412)
T PRK10307 215 DVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLR-DR------------------------------------ 257 (412)
T ss_pred chHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhc-cC------------------------------------
Confidence 13457888999999999999999999999999999998762 11
Q ss_pred cccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCCh
Q 005746 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (679)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~ 588 (679)
++++++ ++|+|.
T Consensus 258 --------------------------------------------------------------~~~~l~---ivG~g~--- 269 (412)
T PRK10307 258 --------------------------------------------------------------PDLIFV---ICGQGG--- 269 (412)
T ss_pred --------------------------------------------------------------CCeEEE---EECCCh---
Confidence 123455 356653
Q ss_pred HHHHHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCC----ccHHHHHHHHcCCCEEEeCCCCC
Q 005746 589 PYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGET----FGRVTIEAMAFGVPKNISQIELS 660 (679)
Q Consensus 589 ~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~Eg----FGrV~IEAMA~GlPVV~S~~g~~ 660 (679)
.++.++.+++.++++ +|.|+|+. ++++.+|++|||+|+||. .|+ +|..++||||||+|||+|+.++.
T Consensus 270 --~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~ 342 (412)
T PRK10307 270 --GKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGT 342 (412)
T ss_pred --hHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCc
Confidence 345677777788997 69999984 699999999999999997 788 56668999999999999998764
No 21
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.94 E-value=2.6e-24 Score=203.78 Aligned_cols=267 Identities=23% Similarity=0.271 Sum_probs=182.5
Q ss_pred eEEEEeCCCC-CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCC--------c----c---hh
Q 005746 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE--------P----S---FK 307 (679)
Q Consensus 244 KILlI~heLs-mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~--------~----s---fk 307 (679)
||+++.+.+. .||+++.+.+|+.+|.+.||+|.+++.......... ...++.+...... . . +.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE-LDPKIKVIDLGDKRDSKLLARFKKLRRLRKLL 79 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc-cCCccceeecccccccchhccccchHHHHHhh
Confidence 6899999999 999999999999999999999999887655411111 1233444332110 0 0 11
Q ss_pred hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHH------HHHHHhhcCCEEEEechhhHHHHHHHHH
Q 005746 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD------RAKLVLDRVKLLVFLSESQTKQWLTWCE 381 (679)
Q Consensus 308 ~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfd------r~k~vl~rvk~LIfvSesq~k~w~~~~~ 381 (679)
...++|+||.+......++.. ......+++.|.|.....+.. ..+..+..++.++++|+.... ..
T Consensus 80 ~~~~~d~i~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~ 150 (348)
T cd03820 80 KNNKPDVVISFLTSLLTFLAS----LGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRA-----LY 150 (348)
T ss_pred cccCCCEEEEcCchHHHHHHH----HhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHH-----Hh
Confidence 236899999987542122221 111222455566643221111 134557789999999988751 11
Q ss_pred HhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHH
Q 005746 382 EEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (679)
Q Consensus 382 eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lL 461 (679)
... ...++.++|++++.+... + . .+.+...++++|++.+.||++.+
T Consensus 151 -~~~-~~~~~~vi~~~~~~~~~~--------------~-----------~-------~~~~~~~i~~~g~~~~~K~~~~l 196 (348)
T cd03820 151 -YKK-FNKNVVVIPNPLPFPPEE--------------P-----------S-------SDLKSKRILAVGRLVPQKGFDLL 196 (348)
T ss_pred -hcc-CCCCeEEecCCcChhhcc--------------c-----------c-------CCCCCcEEEEEEeeccccCHHHH
Confidence 111 234689999998754210 0 0 23566789999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCc
Q 005746 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (679)
Q Consensus 462 LeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 541 (679)
++|++.+.+..|
T Consensus 197 ~~~~~~l~~~~~-------------------------------------------------------------------- 208 (348)
T cd03820 197 IEAWAKIAKKHP-------------------------------------------------------------------- 208 (348)
T ss_pred HHHHHHHHhcCC--------------------------------------------------------------------
Confidence 999998865332
Q ss_pred ccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHH
Q 005746 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (679)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVasly 621 (679)
+..+++ +|.+.. +..++.+.+..++.+.|.|.|..+++..+|
T Consensus 209 ------------------------------~~~l~i---~G~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 250 (348)
T cd03820 209 ------------------------------DWKLRI---VGDGPE-----REALEALIKELGLEDRVILLGFTKNIEEYY 250 (348)
T ss_pred ------------------------------CeEEEE---EeCCCC-----HHHHHHHHHHcCCCCeEEEcCCcchHHHHH
Confidence 233454 455432 233445667789999999999999999999
Q ss_pred HHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 622 sAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
+.||++|+||. .|+||++++||||||+|||+|+.++...
T Consensus 251 ~~ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~ 289 (348)
T cd03820 251 AKASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPTGPS 289 (348)
T ss_pred HhCCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCCchH
Confidence 99999999996 7999999999999999999999866543
No 22
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.94 E-value=1.4e-24 Score=216.99 Aligned_cols=283 Identities=19% Similarity=0.232 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChh-HHhcCCeEEEEcCCCc--------------chh-------hhc-
Q 005746 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLEDRGEP--------------SFK-------TSM- 310 (679)
Q Consensus 254 mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~-EL~rrgIkVl~~r~~~--------------sfk-------~~~- 310 (679)
.||++.++.+||.+|.+.||+|.+++....++... .....+++++...... .+. ...
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREG 99 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999887654433221 2223466665432100 000 122
Q ss_pred -CcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH---------------HHHHHHHHHhhcCCEEEEechhhHH
Q 005746 311 -KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---------------EYFDRAKLVLDRVKLLVFLSESQTK 374 (679)
Q Consensus 311 -kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr---------------eYfdr~k~vl~rvk~LIfvSesq~k 374 (679)
++|+||++....+ ++...++... +.++++++|.... ..+...+.++..++.++++|+...+
T Consensus 100 ~~~Div~~~~~~~~-~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 176 (398)
T cd03800 100 GRPDLIHAHYWDSG-LVALLLARRL--GIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAE 176 (398)
T ss_pred CCccEEEEecCccc-hHHHHHHhhc--CCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHH
Confidence 8999999864332 2222222221 2234445553211 0011123456789999999998776
Q ss_pred HHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCC
Q 005746 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (679)
Q Consensus 375 ~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp 454 (679)
.... .......+..+||+|++.+.+ .+... ....+++++.++++++|+++|++.+
T Consensus 177 ~~~~----~~~~~~~~~~vi~ng~~~~~~--------------~~~~~-------~~~~~~~~~~~~~~~~i~~~gr~~~ 231 (398)
T cd03800 177 ELYS----LYGAYPRRIRVVPPGVDLERF--------------TPYGR-------AEARRARLLRDPDKPRILAVGRLDP 231 (398)
T ss_pred HHHH----HccccccccEEECCCCCccce--------------ecccc-------hhhHHHhhccCCCCcEEEEEccccc
Confidence 5322 222222347899999975432 11110 0112566778888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccccc
Q 005746 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (679)
Q Consensus 455 ~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (679)
.||++.+++|+..+.++.+
T Consensus 232 ~k~~~~ll~a~~~l~~~~~------------------------------------------------------------- 250 (398)
T cd03800 232 RKGIDTLIRAYAELPELRE------------------------------------------------------------- 250 (398)
T ss_pred ccCHHHHHHHHHHHHHhCC-------------------------------------------------------------
Confidence 9999999999998865432
Q ss_pred ccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCC-hHHHHHHHHHHHHhCCCCCcEEECCC
Q 005746 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK-VPYVKEILEFLSQHSNLSKAMLWTPA 613 (679)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk-~~y~k~~L~~L~~~lnLs~~V~ftG~ 613 (679)
++.++++| .+... ..+....++.+++..++.++|.|+|.
T Consensus 251 -------------------------------------~~~l~i~G---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 290 (398)
T cd03800 251 -------------------------------------RANLVIVG---GPRDDILAMDEEELRELARELGVIDRVDFPGR 290 (398)
T ss_pred -------------------------------------CeEEEEEE---CCCCcchhhhhHHHHHHHHhcCCCceEEEecc
Confidence 23456554 33222 23334557778888999999999999
Q ss_pred c--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 614 ~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
. .++..+|++||++|+||. .|+||++++||||||+|||+|+.++.++..+++
T Consensus 291 ~~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~ 344 (398)
T cd03800 291 VSREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDG 344 (398)
T ss_pred CCHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCC
Confidence 4 689999999999999995 899999999999999999999999988766554
No 23
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.94 E-value=1.9e-24 Score=229.72 Aligned_cols=279 Identities=20% Similarity=0.231 Sum_probs=182.4
Q ss_pred CCCCeEEEEeCCC---CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCC---------Ccc--
Q 005746 240 VWSRKFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG---------EPS-- 305 (679)
Q Consensus 240 ~~~rKILlI~heL---smgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~---------~~s-- 305 (679)
...|||+++++.. ..||++..+.+|+.+|.+.||+|++++... + ...++ .+++++.... ..+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~-~-~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~ 131 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE-G-VPQEF--HGAKVIGSWSFPCPFYQKVPLSLA 131 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC-C-CCccc--cCceeeccCCcCCccCCCceeecc
Confidence 4568999998754 358999999999999999999999887543 2 22221 3444432111 001
Q ss_pred -------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHH-------------HHHHHHHhhcCCEE
Q 005746 306 -------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY-------------FDRAKLVLDRVKLL 365 (679)
Q Consensus 306 -------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreY-------------fdr~k~vl~rvk~L 365 (679)
+....++|+||+++.-...|...+++.. .+. +++..+|..-..| +...+.+...++.+
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~-~~i-p~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKL-LCV-PLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH-hCC-CEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEE
Confidence 1123689999998743222322222221 122 2333334321111 11123445678999
Q ss_pred EEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcC-CCCCCE
Q 005746 366 VFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG-LTDQDM 444 (679)
Q Consensus 366 IfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelG-L~d~d~ 444 (679)
|++|+...+.. .+.+.....++.|||+|+|.+.+. |.+.. ...++++. ..++++
T Consensus 210 i~~S~~~~~~l----~~~~~~~~~kv~vi~nGvd~~~f~----------p~~~~-----------~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 210 LVTSPALGKEL----EAAGVTAANRIRVWNKGVDSESFH----------PRFRS-----------EEMRARLSGGEPEKP 264 (465)
T ss_pred EECCHHHHHHH----HHcCCCCcCeEEEeCCccCccccC----------Ccccc-----------HHHHHHhcCCCCCCe
Confidence 99999887763 334433345689999999865321 11111 12344443 345778
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccc
Q 005746 445 LVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (679)
Q Consensus 445 LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~ 524 (679)
+|+++|++.+.||++.|+++++.+ ++
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~~----~~-------------------------------------------------- 290 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMERL----PG-------------------------------------------------- 290 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHhC----CC--------------------------------------------------
Confidence 999999999999999999987643 11
Q ss_pred ccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCC
Q 005746 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (679)
Q Consensus 525 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnL 604 (679)
+++++ +|++. .++.++.+++.
T Consensus 291 ------------------------------------------------~~l~i---vG~G~-----~~~~l~~~~~~--- 311 (465)
T PLN02871 291 ------------------------------------------------ARLAF---VGDGP-----YREELEKMFAG--- 311 (465)
T ss_pred ------------------------------------------------cEEEE---EeCCh-----HHHHHHHHhcc---
Confidence 23454 45542 34456666553
Q ss_pred CCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCC
Q 005746 605 SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPT 665 (679)
Q Consensus 605 s~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~ 665 (679)
..|.|+|+. ++++.+|++|||+|+||. .|+||++++||||||+|||+|+.++.++...
T Consensus 312 -~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~ 371 (465)
T PLN02871 312 -TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIP 371 (465)
T ss_pred -CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhh
Confidence 369999996 799999999999999996 8999999999999999999999999887543
No 24
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.94 E-value=2.5e-24 Score=223.80 Aligned_cols=279 Identities=16% Similarity=0.225 Sum_probs=188.2
Q ss_pred CeEEEEeCC-C-----CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChh-HHhcCCeEEEEc--CC-C---------
Q 005746 243 RKFILIFHE-L-----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLED--RG-E--------- 303 (679)
Q Consensus 243 rKILlI~he-L-----smgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~-EL~rrgIkVl~~--r~-~--------- 303 (679)
.||+++.++ + ..||+|.++.+++..|.. +|++++....| |.+ +....|+.|... .. .
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPG-YPEYTKVNDNCDIHYIGFSRIYKRLFQKWTR 78 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCC-CCchhhccCCCceEEEEeccccchhhhhhhc
Confidence 467665544 3 358999999999999943 99999887764 333 344444444322 11 0
Q ss_pred ---cch-------h---hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEech
Q 005746 304 ---PSF-------K---TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSE 370 (679)
Q Consensus 304 ---~sf-------k---~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSe 370 (679)
..+ . ...++|+|+.|... .+...+....| ..+++.++|+. |. ...+.+.+.+|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~--~~~~~~~~~~~--~~~~v~~~h~~----~~--~~~~~~~~~ii~~S~ 148 (380)
T PRK15484 79 LDPLPYSQRILNIAHKFTITKDSVIVIHNSM--KLYRQIRERAP--QAKLVMHMHNA----FE--PELLDKNAKIIVPSQ 148 (380)
T ss_pred cCchhHHHHHHHHHHhcCCCCCcEEEEeCcH--HhHHHHHhhCC--CCCEEEEEecc----cC--hhHhccCCEEEEcCH
Confidence 000 0 12458999988743 23333333333 23455566643 21 123567789999999
Q ss_pred hhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEe
Q 005746 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (679)
Q Consensus 371 sq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvG 450 (679)
...+.+.. ... ..++.|||||++.+.+ .+.. +..+++++|+++++.+|+++|
T Consensus 149 ~~~~~~~~-----~~~-~~~i~vIpngvd~~~~--------------~~~~--------~~~~~~~~~~~~~~~~il~~G 200 (380)
T PRK15484 149 FLKKFYEE-----RLP-NADISIVPNGFCLETY--------------QSNP--------QPNLRQQLNISPDETVLLYAG 200 (380)
T ss_pred HHHHHHHh-----hCC-CCCEEEecCCCCHHHc--------------CCcc--------hHHHHHHhCCCCCCeEEEEec
Confidence 88776332 122 2357899999986532 1111 234567889998899999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccc
Q 005746 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (679)
Q Consensus 451 rInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (679)
++.+.||++.|++|++.+.++.|+
T Consensus 201 rl~~~Kg~~~Li~A~~~l~~~~p~-------------------------------------------------------- 224 (380)
T PRK15484 201 RISPDKGILLLMQAFEKLATAHSN-------------------------------------------------------- 224 (380)
T ss_pred cCccccCHHHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 999999999999999998765433
Q ss_pred ccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCC----ChHHHHHHHHHHHHhCCCCC
Q 005746 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN----KVPYVKEILEFLSQHSNLSK 606 (679)
Q Consensus 531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~sn----k~~y~k~~L~~L~~~lnLs~ 606 (679)
+.++++| ++.. ....+.+.++.+++.+ ..
T Consensus 225 ------------------------------------------~~lvivG---~g~~~~~~~~~~~~~~l~~~~~~l--~~ 257 (380)
T PRK15484 225 ------------------------------------------LKLVVVG---DPTASSKGEKAAYQKKVLEAAKRI--GD 257 (380)
T ss_pred ------------------------------------------eEEEEEe---CCccccccchhHHHHHHHHHHHhc--CC
Confidence 3456554 3321 1122344456666644 46
Q ss_pred cEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 607 ~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+|.|+|.. +++..+|++|||+|+||+ ..|+||++++||||||+|||+|+.|+..+...+|
T Consensus 258 ~v~~~G~~~~~~l~~~~~~aDv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~ 319 (380)
T PRK15484 258 RCIMLGGQPPEKMHNYYPLADLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEG 319 (380)
T ss_pred cEEEeCCCCHHHHHHHHHhCCEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHhhcccC
Confidence 89999984 699999999999999997 4699999999999999999999999998865544
No 25
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.94 E-value=2.7e-24 Score=228.67 Aligned_cols=312 Identities=18% Similarity=0.168 Sum_probs=200.4
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH--------------------------hc
Q 005746 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL--------------------------AR 292 (679)
Q Consensus 243 rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL--------------------------~r 292 (679)
||||+|..|.. .||....+-+|+++|.+.||+|.|++... +.+.+.. ..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY-GCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC-cChhhhhccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 68999999943 58889999999999999999999887543 3332211 01
Q ss_pred CCeEEEEc-------C-C--Cc-----c------hh---------hhcCcCEEEEcchhHHHHHHHHHHhcCCC-CccEE
Q 005746 293 RKIKVLED-------R-G--EP-----S------FK---------TSMKADLVIAGSAVCATWIDQYITRFPAG-GSQVV 341 (679)
Q Consensus 293 rgIkVl~~-------r-~--~~-----s------fk---------~~~kaDLVia~Sav~aswI~qyia~~pag-~s~Vv 341 (679)
.|++++-. + . .. . |. ...++|+||+|..-++ .+..++...... ..+++
T Consensus 80 ~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~-~~~~~l~~~~~~~~~~~v 158 (473)
T TIGR02095 80 EGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTA-LVPALLKAVYRPNPIKTV 158 (473)
T ss_pred CCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHH-HHHHHHHhhccCCCCCEE
Confidence 24554411 1 1 00 0 10 1247999999974332 223333221110 13455
Q ss_pred Eeeehhh------H----------HHH-----------HHHHHHhhcCCEEEEechhhHHHHHHHHHHhhcc-----CCC
Q 005746 342 WWIMENR------R----------EYF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK-----LRS 389 (679)
Q Consensus 342 WwI~E~r------r----------eYf-----------dr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~-----l~s 389 (679)
..+|... . .++ ...+..+.+++.++++|+..++...+.....++. .+.
T Consensus 159 ~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ 238 (473)
T TIGR02095 159 FTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSG 238 (473)
T ss_pred EEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCC
Confidence 5565321 0 011 1124457788999999998776633210000110 134
Q ss_pred CcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC--CCEEEEEEeccCCCCCHHHHHHHHHH
Q 005746 390 QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVESAQL 467 (679)
Q Consensus 390 q~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d--~d~LVlsvGrInp~KGq~lLLeA~~~ 467 (679)
+..+||||+|.+.+.... ...+ ...|+.+.+.. +...+..+|+++|+++ +.++|+++||+.++||+++|++|+..
T Consensus 239 ki~~I~NGid~~~~~p~~-~~~~-~~~~~~~~~~~-k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 315 (473)
T TIGR02095 239 KLRGILNGIDTEVWNPAT-DPYL-KANYSADDLAG-KAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPE 315 (473)
T ss_pred CeEEEeCCCCccccCCCC-Cccc-ccCcCccchhh-hhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHH
Confidence 689999999977542211 1111 12344444432 3334677899999986 78999999999999999999999998
Q ss_pred HHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCC
Q 005746 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (679)
Q Consensus 468 lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 547 (679)
+.++.
T Consensus 316 l~~~~--------------------------------------------------------------------------- 320 (473)
T TIGR02095 316 LLELG--------------------------------------------------------------------------- 320 (473)
T ss_pred HHHcC---------------------------------------------------------------------------
Confidence 75421
Q ss_pred CCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC-c-hhHHHHHHHcC
Q 005746 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA-T-TRVASLYSAAD 625 (679)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~-~-tdVaslysAAD 625 (679)
+++++ +|.+. +..++.++.++++. +.+|.|.+. . +.+..+|++||
T Consensus 321 -------------------------~~lvi---~G~g~---~~~~~~l~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aD 367 (473)
T TIGR02095 321 -------------------------GQLVV---LGTGD---PELEEALRELAERY--PGNVRVIIGYDEALAHLIYAGAD 367 (473)
T ss_pred -------------------------cEEEE---ECCCC---HHHHHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHhCC
Confidence 23454 45542 22455677777654 456766554 3 44678999999
Q ss_pred EEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCCCc
Q 005746 626 VYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSGTW 669 (679)
Q Consensus 626 V~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~~~ 669 (679)
++|+||. .|+||++++||||||+|||+|++|+..+...+|.|
T Consensus 368 v~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~ 409 (473)
T TIGR02095 368 FILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDP 409 (473)
T ss_pred EEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCC
Confidence 9999996 99999999999999999999999999987776643
No 26
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.94 E-value=6e-24 Score=214.42 Aligned_cols=283 Identities=17% Similarity=0.204 Sum_probs=184.6
Q ss_pred CeEEEEeCCCC---CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc----------ch---
Q 005746 243 RKFILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------SF--- 306 (679)
Q Consensus 243 rKILlI~heLs---mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~----------sf--- 306 (679)
|||++|.+... .||++.++.+||.+|.+. ++|.+++... +. ....+++++..+... .+
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGD-QR----FDSEGLTVKGYRPWSELKEANKALGTFSVD 74 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCC-ch----hcCCCeEEEEecChhhccchhhhhhhhhHH
Confidence 58999988876 389999999999999886 6666665432 21 234567765332110 00
Q ss_pred ----hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH-------------HHHH-HHHHHhhcCCEEEEe
Q 005746 307 ----KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------------EYFD-RAKLVLDRVKLLVFL 368 (679)
Q Consensus 307 ----k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr-------------eYfd-r~k~vl~rvk~LIfv 368 (679)
....++|+||+|+...+ ++....... . +.++++.+|+... .++. ..+..+..++.+|++
T Consensus 75 ~~~~~~~~~~divh~~~~~~~-~~~~~~~~~-~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 151 (388)
T TIGR02149 75 LAMANDPVDADVVHSHTWYTF-LAGHLAKKL-Y-DKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAV 151 (388)
T ss_pred HHHhhCCCCCCeEeecchhhh-hHHHHHHHh-c-CCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEc
Confidence 11236999999874322 222111111 1 2235555554310 0111 123456789999999
Q ss_pred chhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEE
Q 005746 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLS 448 (679)
Q Consensus 369 Sesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVls 448 (679)
|+...+....+. .++. ..++.|||||++.+.+ .+. .+...++++|++++.++|++
T Consensus 152 S~~~~~~~~~~~--~~~~-~~~i~vi~ng~~~~~~--------------~~~--------~~~~~~~~~~~~~~~~~i~~ 206 (388)
T TIGR02149 152 SGGMREDILKYY--PDLD-PEKVHVIYNGIDTKEY--------------KPD--------DGNVVLDRYGIDRSRPYILF 206 (388)
T ss_pred cHHHHHHHHHHc--CCCC-cceEEEecCCCChhhc--------------CCC--------chHHHHHHhCCCCCceEEEE
Confidence 998877643211 0232 2467899999976522 111 12346788999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccc
Q 005746 449 LSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQL 528 (679)
Q Consensus 449 vGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (679)
+|++.+.||++.|++|++.+.. +
T Consensus 207 ~Grl~~~Kg~~~li~a~~~l~~---~------------------------------------------------------ 229 (388)
T TIGR02149 207 VGRITRQKGVPHLLDAVHYIPK---D------------------------------------------------------ 229 (388)
T ss_pred EcccccccCHHHHHHHHHHHhh---c------------------------------------------------------
Confidence 9999999999999999987631 1
Q ss_pred ccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCC-Cc
Q 005746 529 NEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KA 607 (679)
Q Consensus 529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs-~~ 607 (679)
..++++| .+....+ +.+.++.+.+.++.. +.
T Consensus 230 --------------------------------------------~~l~i~g---~g~~~~~-~~~~~~~~~~~~~~~~~~ 261 (388)
T TIGR02149 230 --------------------------------------------VQVVLCA---GAPDTPE-VAEEVRQAVALLDRNRTG 261 (388)
T ss_pred --------------------------------------------CcEEEEe---CCCCcHH-HHHHHHHHHHHhccccCc
Confidence 1234433 2222222 334455555555553 45
Q ss_pred EEEC-CC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 608 MLWT-PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 608 V~ft-G~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
|.|. |. ..++..+|++||++|+||. .|+||++++||||||+|||+|++++.++..++
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~ 321 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVD 321 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC
Confidence 7765 43 5789999999999999996 89999999999999999999999998875544
No 27
>PRK14099 glycogen synthase; Provisional
Probab=99.93 E-value=5.7e-24 Score=230.69 Aligned_cols=310 Identities=16% Similarity=0.153 Sum_probs=200.6
Q ss_pred CCCCeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhH---------Hh-------------cC
Q 005746 240 VWSRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---------LA-------------RR 293 (679)
Q Consensus 240 ~~~rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~E---------L~-------------rr 293 (679)
|.++|||+|..|.. .||-.-.+-.|..+|.+.||+|.|++. .-+.+... +. ..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVP-GYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeC-CCcchhhhhcCceEEEEEeeeCCceEEEEEEEeC
Confidence 46799999999986 578888999999999999999998764 33333211 10 01
Q ss_pred CeEEEE-------cC-C------------Cc--c---hhh-----------hcCcCEEEEcchhHHHHHHHHHHhcCCCC
Q 005746 294 KIKVLE-------DR-G------------EP--S---FKT-----------SMKADLVIAGSAVCATWIDQYITRFPAGG 337 (679)
Q Consensus 294 gIkVl~-------~r-~------------~~--s---fk~-----------~~kaDLVia~Sav~aswI~qyia~~pag~ 337 (679)
|++++- .+ + +. . |.. ..+||+||+|...++ ++..++.......
T Consensus 80 ~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~~~~l~~~~~~~ 158 (485)
T PRK14099 80 GLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LAPAYLHYSGRPA 158 (485)
T ss_pred CceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HHHHHHHhCCCCC
Confidence 344331 01 1 00 0 101 247999999985443 3344443211112
Q ss_pred ccEEEeeehhh------------------------HHHHH---HHHHHhhcCCEEEEechhhHHHHHHHHHHhhcc----
Q 005746 338 SQVVWWIMENR------------------------REYFD---RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK---- 386 (679)
Q Consensus 338 s~VvWwI~E~r------------------------reYfd---r~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~---- 386 (679)
.+++..||... .+|+. ..+..+.+++.++++|+..++...+.....|+.
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 33555566421 01111 124557789999999999887643210000110
Q ss_pred -CCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC--CCEEEEEEeccCCCCCHHHHHH
Q 005746 387 -LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVE 463 (679)
Q Consensus 387 -l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d--~d~LVlsvGrInp~KGq~lLLe 463 (679)
...++.+||||||.+.+..... ..-...|+.+.+. .+...+..+|+++|++. +.++++++||+.++||+++|++
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~--~~~~~~~~~~~~~-~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~ 315 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATD--ELIAATYDVETLA-ARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLE 315 (485)
T ss_pred hhCCCeEEEecCCchhhcccccc--chhhhcCChhHHH-hHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHH
Confidence 1346899999999775432210 0011234555443 33445678899999984 4688999999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCccc
Q 005746 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (679)
Q Consensus 464 A~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (679)
|+..+.++
T Consensus 316 A~~~l~~~------------------------------------------------------------------------ 323 (485)
T PRK14099 316 ALPTLLGE------------------------------------------------------------------------ 323 (485)
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 99987642
Q ss_pred ccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcE-EECCCchhHHHHHH
Q 005746 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAM-LWTPATTRVASLYS 622 (679)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V-~ftG~~tdVaslys 622 (679)
+..++++ |+|. +..++.++.+++++ ++++ .|+|+.++++.+|.
T Consensus 324 ----------------------------~~~lviv---G~G~---~~~~~~l~~l~~~~--~~~v~~~~G~~~~l~~~~~ 367 (485)
T PRK14099 324 ----------------------------GAQLALL---GSGD---AELEARFRAAAQAY--PGQIGVVIGYDEALAHLIQ 367 (485)
T ss_pred ----------------------------CcEEEEE---ecCC---HHHHHHHHHHHHHC--CCCEEEEeCCCHHHHHHHH
Confidence 1234544 4432 22455677777654 3555 79999999999875
Q ss_pred -HcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCC
Q 005746 623 -AADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDP 664 (679)
Q Consensus 623 -AADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~ 664 (679)
+||+||+||+ .|+||++.+||||||+|+|+|++||..+-.
T Consensus 368 a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d~V 408 (485)
T PRK14099 368 AGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLADTV 408 (485)
T ss_pred hcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCcccee
Confidence 6999999996 899999999999999988999999987643
No 28
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.93 E-value=6.3e-25 Score=226.48 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=180.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc-----------ch------
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------SF------ 306 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~-----------sf------ 306 (679)
|||+|...+. -..-+||++|.++||+|++++....+.... |++++..+... .+
T Consensus 1 ~il~~~~~~p-----~~~~~la~~L~~~G~~v~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (396)
T cd03818 1 RILFVHQNFP-----GQFRHLAPALAAQGHEVVFLTEPNAAPPPG-----GVRVVRYRPPRGPTSGTHPYLREFEEAVLR 70 (396)
T ss_pred CEEEECCCCc-----hhHHHHHHHHHHCCCEEEEEecCCCCCCCC-----CeeEEEecCCCCCCCCCCccchhHHHHHHH
Confidence 4677766554 235689999999999999998766543322 67776432110 00
Q ss_pred ------------hhhcCcCEEEEcchhHHHH-HHHHHHhcCCCCccEE---Eeeeh-h----------hHH---HHHHH-
Q 005746 307 ------------KTSMKADLVIAGSAVCATW-IDQYITRFPAGGSQVV---WWIME-N----------RRE---YFDRA- 355 (679)
Q Consensus 307 ------------k~~~kaDLVia~Sav~asw-I~qyia~~pag~s~Vv---WwI~E-~----------rre---Yfdr~- 355 (679)
....+||+||+|+...... +.. .+|. .+.+. ||... . .+. ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~---~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (396)
T cd03818 71 GQAVARALLALRAKGFRPDVIVAHPGWGETLFLKD---VWPD-APLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNR 146 (396)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHH---hCCC-CCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHh
Confidence 1224799999998643221 111 2221 11111 11111 0 000 11111
Q ss_pred ----HHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHH
Q 005746 356 ----KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRD 431 (679)
Q Consensus 356 ----k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~ 431 (679)
...+..++.+|++|+.+.+.+.... +.++.|||+|+|.+.+ .+... ...
T Consensus 147 ~~~~~~~~~~ad~vi~~s~~~~~~~~~~~-------~~ki~vI~ngvd~~~f--------------~~~~~------~~~ 199 (396)
T cd03818 147 NALILLALAQADAGVSPTRWQRSTFPAEL-------RSRISVIHDGIDTDRL--------------RPDPQ------ARL 199 (396)
T ss_pred hhHhHHHHHhCCEEECCCHHHHhhCcHhh-------ccceEEeCCCcccccc--------------CCCch------hhh
Confidence 2346789999999999887643221 2468999999976532 22111 011
Q ss_pred HHHHHcCCCCCCEEEEEEec-cCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccc
Q 005746 432 SVRKEMGLTDQDMLVLSLSS-INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDD 510 (679)
Q Consensus 432 svRkelGL~d~d~LVlsvGr-Inp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~ 510 (679)
..+...++++++.+|+++|| +.+.||++.|++|++.+.++.|+
T Consensus 200 ~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~------------------------------------ 243 (396)
T cd03818 200 RLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPD------------------------------------ 243 (396)
T ss_pred cccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCC------------------------------------
Confidence 23344557788899999997 99999999999999988764432
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCC-----
Q 005746 511 VGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS----- 585 (679)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~s----- 585 (679)
++++++|..+...
T Consensus 244 --------------------------------------------------------------~~lvivG~~~~~~g~~~~ 261 (396)
T cd03818 244 --------------------------------------------------------------ARVVIVGGDGVSYGAPPP 261 (396)
T ss_pred --------------------------------------------------------------cEEEEEcCCCcccCCCCC
Confidence 3457665322100
Q ss_pred CChHHHHHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccC
Q 005746 586 NKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKD 663 (679)
Q Consensus 586 nk~~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~ 663 (679)
....|.+.+++.+...++ .++|.|+|.. ++++.+|++||++|+||. .|+||++++||||||+|||+|++++.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~ 338 (396)
T cd03818 262 DGESWKQHMLDELGGRLD-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREV 338 (396)
T ss_pred CcccHHHHHHHHhhcccC-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhh
Confidence 011244444555443222 4789999995 689999999999999995 99999999999999999999999998876
Q ss_pred CCCC
Q 005746 664 PTSG 667 (679)
Q Consensus 664 ~~~~ 667 (679)
..+|
T Consensus 339 i~~~ 342 (396)
T cd03818 339 ITDG 342 (396)
T ss_pred cccC
Confidence 6543
No 29
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.93 E-value=4.2e-24 Score=236.77 Aligned_cols=290 Identities=19% Similarity=0.200 Sum_probs=188.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHH----CCC--------eEEEEEeC--CCCC---ChhHHhcCCeEEEEcC---CC
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLS----CGA--------TVSAVVLS--KRGG---LMPELARRKIKVLEDR---GE 303 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s----~G~--------~VsaVvLs--~~Gg---L~~EL~rrgIkVl~~r---~~ 303 (679)
.+.++..+|+.|||++.+..+|-++.+ .|- .|.+++-+ .++| +.+++.+.+|.|.+.. +.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 488999999999999999966665543 333 35554433 3343 5678888899887521 00
Q ss_pred ------------cch------------------hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehh----h-
Q 005746 304 ------------PSF------------------KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN----R- 348 (679)
Q Consensus 304 ------------~sf------------------k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~----r- 348 (679)
.+| -...++|+||++..- .++...++...++.+.++...|-. +
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~--a~l~g~laA~lagvpviv~~~h~~~~~~~~ 320 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDG--ACLMIALAALIAGVPRIQLGLRGLPPVVRK 320 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcc--cHHHHHHHHHhcCCCEEEEeecccCCcchh
Confidence 000 134689999997532 122112222223444444333210 1
Q ss_pred ----HHHHH--HHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhH
Q 005746 349 ----REYFD--RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (679)
Q Consensus 349 ----reYfd--r~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~ 422 (679)
++|.. ++..+...++ ++..|..+++...++ .+++ ++++.||||||+.+. |.+...
T Consensus 321 r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~---lgip-~~KI~VIyNGVD~~r--------------f~p~~~ 381 (578)
T PRK15490 321 RLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADW---LKLE-AKHFQVVYNGVLPPS--------------TEPSSE 381 (578)
T ss_pred hHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHH---hCCC-HHHEEEEeCCcchhh--------------cCccch
Confidence 11110 0001111222 555677766664433 3443 357899999997642 222210
Q ss_pred HHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccc
Q 005746 423 REKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGR 502 (679)
Q Consensus 423 ~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~ 502 (679)
.+...|..+ ..++++++++|+++|++.+.||++.++++++.+.++.|
T Consensus 382 --~~~~~r~~~--~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~p----------------------------- 428 (578)
T PRK15490 382 --VPHKIWQQF--TQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHP----------------------------- 428 (578)
T ss_pred --hhHHHHHHh--hhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCC-----------------------------
Confidence 000112222 24566778899999999999999999999988765433
Q ss_pred cccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeC
Q 005746 503 GLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVG 582 (679)
Q Consensus 503 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VG 582 (679)
++++++ +|
T Consensus 429 ---------------------------------------------------------------------dirLvI---VG 436 (578)
T PRK15490 429 ---------------------------------------------------------------------ATRFVL---VG 436 (578)
T ss_pred ---------------------------------------------------------------------CeEEEE---Ee
Confidence 234564 45
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 583 SKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 583 s~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
+|. .++.++.+++++|+.++|.|+|+.+|++.+|++|||||+||. .|+||++++||||||+|||+|++|+..+
T Consensus 437 dG~-----~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~E 509 (578)
T PRK15490 437 DGD-----LRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAE 509 (578)
T ss_pred Cch-----hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHH
Confidence 542 456677888889999999999999999999999999999996 8999999999999999999999999887
Q ss_pred CCCC
Q 005746 663 DPTS 666 (679)
Q Consensus 663 ~~~~ 666 (679)
...+
T Consensus 510 iV~d 513 (578)
T PRK15490 510 CFIE 513 (578)
T ss_pred Hccc
Confidence 5443
No 30
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.93 E-value=1.9e-23 Score=219.88 Aligned_cols=298 Identities=16% Similarity=0.096 Sum_probs=187.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc---c----------h---
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---S----------F--- 306 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~---s----------f--- 306 (679)
+|.|.++.. .+.|++..|.++|.+|.+.||+|++++.+..+...+.....+|+++...... . +
T Consensus 3 ~~~~~~~~~-~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T cd03816 3 RKRVCVLVL-GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLW 81 (415)
T ss_pred ccEEEEEEe-cccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHHH
Confidence 344444333 4577777789999999999999999987654444333567788887654321 0 0
Q ss_pred ---------hhhcCcCEEEEcch--hHHHHHHHHHHhcCCCCccEEEeeehhhH--------------HHHHH-HHHHhh
Q 005746 307 ---------KTSMKADLVIAGSA--VCATWIDQYITRFPAGGSQVVWWIMENRR--------------EYFDR-AKLVLD 360 (679)
Q Consensus 307 ---------k~~~kaDLVia~Sa--v~aswI~qyia~~pag~s~VvWwI~E~rr--------------eYfdr-~k~vl~ 360 (679)
....++|+||+++. ..+.++..++... .+. +++..+|+... .++.. .+.+..
T Consensus 82 ~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~-~~~-~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 159 (415)
T cd03816 82 QFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLL-RRT-KLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGR 159 (415)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH-hCC-eEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhh
Confidence 11247999998752 2222222222221 122 33333343210 01111 234456
Q ss_pred cCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHH-----
Q 005746 361 RVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRK----- 435 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRk----- 435 (679)
+++.+|++|+...++. .+.++. +.++.||||+.. +.+. |.... +. +...++
T Consensus 160 ~ad~ii~vS~~~~~~l----~~~~~~-~~ki~vI~Ng~~-~~f~----------p~~~~----~~----~~~~~~~~~~~ 215 (415)
T cd03816 160 LADYNLCVTKAMKEDL----QQFNNW-KIRATVLYDRPP-EQFR----------PLPLE----EK----HELFLKLAKTF 215 (415)
T ss_pred cCCEeeecCHHHHHHH----Hhhhcc-CCCeeecCCCCH-HHce----------eCcHH----HH----HHHHHhccccc
Confidence 7899999999988773 234443 357899999843 3211 11000 00 011111
Q ss_pred --------HcCC-CCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccc
Q 005746 436 --------EMGL-TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQ 506 (679)
Q Consensus 436 --------elGL-~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~ 506 (679)
..++ +++..+++++|++.+.||++.|++|++.+.++....
T Consensus 216 ~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~------------------------------- 264 (415)
T cd03816 216 LTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG------------------------------- 264 (415)
T ss_pred cccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc-------------------------------
Confidence 1122 345678889999999999999999999886532110
Q ss_pred cccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCC
Q 005746 507 MSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN 586 (679)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~sn 586 (679)
..+++++++++ |+|.
T Consensus 265 -------------------------------------------------------------~~~~~i~l~iv---G~G~- 279 (415)
T cd03816 265 -------------------------------------------------------------PKLPKLLCIIT---GKGP- 279 (415)
T ss_pred -------------------------------------------------------------ccCCCEEEEEE---ecCc-
Confidence 01244566754 5542
Q ss_pred ChHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHcCEEEEcCC-CCCCCccHHHHHHHHcCCCEEEeCCCCCccC
Q 005746 587 KVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQ-GLGETFGRVTIEAMAFGVPKNISQIELSRKD 663 (679)
Q Consensus 587 k~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAADV~VlpSq-~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~ 663 (679)
.++.++.+++++++++.+.++|+ .++++.+|++||++|+++. ..+|+||++++||||||+|||+|++++.++-
T Consensus 280 ----~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~ei 355 (415)
T cd03816 280 ----LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDEL 355 (415)
T ss_pred ----cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 34566777778999877777785 5899999999999997532 1368999999999999999999999988875
Q ss_pred CCCC
Q 005746 664 PTSG 667 (679)
Q Consensus 664 ~~~~ 667 (679)
.++|
T Consensus 356 v~~~ 359 (415)
T cd03816 356 VKHG 359 (415)
T ss_pred hcCC
Confidence 5543
No 31
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.93 E-value=1.2e-23 Score=206.66 Aligned_cols=266 Identities=20% Similarity=0.212 Sum_probs=173.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchhH
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav~ 322 (679)
|||+++.+..+.||+++...+++.+|.+.||+|++++.... .+.. .....++|+||+|....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-~~~~-----------------~~~~~~~diih~~~~~~ 62 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-ALIS-----------------KIEIINADIVHLHWIHG 62 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-hhhh-----------------ChhcccCCEEEEEcccc
Confidence 68999999999999999999999999999999999886533 1111 11235678888765322
Q ss_pred HHHHHHHHHhcCCCCccEEEeeehh----------------------------------hHHHHHHHHHHh-hcCCEEEE
Q 005746 323 ATWIDQYITRFPAGGSQVVWWIMEN----------------------------------RREYFDRAKLVL-DRVKLLVF 367 (679)
Q Consensus 323 aswI~qyia~~pag~s~VvWwI~E~----------------------------------rreYfdr~k~vl-~rvk~LIf 367 (679)
..+.-..+.... ...++++.+|.. ....+.+....+ .....+|+
T Consensus 63 ~~~~~~~~~~~~-~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (365)
T cd03825 63 GFLSIEDLSKLL-DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVA 141 (365)
T ss_pred CccCHHHHHHHH-cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEe
Confidence 111000111100 122345555431 011111111222 23456788
Q ss_pred echhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEE
Q 005746 368 LSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVL 447 (679)
Q Consensus 368 vSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVl 447 (679)
+|+...+..... ..+. ..+..|||++++.+.+ .+. .+...++.+++++++.+++
T Consensus 142 ~s~~~~~~~~~~---~~~~-~~~~~vi~ngi~~~~~--------------~~~--------~~~~~~~~~~~~~~~~~i~ 195 (365)
T cd03825 142 PSRWLADCARSS---SLFK-GIPIEVIPNGIDTTIF--------------RPR--------DKREARKRLGLPADKKIIL 195 (365)
T ss_pred hhHHHHHHHHhc---cccC-CCceEEeCCCCccccc--------------CCC--------cHHHHHHHhCCCCCCeEEE
Confidence 887776653221 1122 2468999999976432 111 1234677889998888887
Q ss_pred EEeccCC--CCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccc
Q 005746 448 SLSSINP--GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESF 525 (679)
Q Consensus 448 svGrInp--~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~ 525 (679)
+.|+... .||++.+++|++.+.++..
T Consensus 196 ~~~~~~~~~~K~~~~ll~a~~~l~~~~~---------------------------------------------------- 223 (365)
T cd03825 196 FGAVGGTDPRKGFDELIEALKRLAERWK---------------------------------------------------- 223 (365)
T ss_pred EEecCCCccccCHHHHHHHHHHhhhccC----------------------------------------------------
Confidence 7777654 8999999999998754310
Q ss_pred cccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCC
Q 005746 526 TQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS 605 (679)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs 605 (679)
++..++ ++|.+... . ..++.
T Consensus 224 ---------------------------------------------~~~~~~---i~G~~~~~----~--------~~~~~ 243 (365)
T cd03825 224 ---------------------------------------------DDIELV---VFGASDPE----I--------PPDLP 243 (365)
T ss_pred ---------------------------------------------CCeEEE---EeCCCchh----h--------hccCC
Confidence 112334 34554211 0 01567
Q ss_pred CcEEECCCch---hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 606 KAMLWTPATT---RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 606 ~~V~ftG~~t---dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
..|.|+|+.+ ++..+|++||++++||. .|+||++++||||||+|||++++++..+..+++
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~ 306 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHG 306 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCC
Confidence 8899999966 68899999999999996 899999999999999999999999988765543
No 32
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=2.7e-23 Score=203.67 Aligned_cols=280 Identities=22% Similarity=0.224 Sum_probs=186.5
Q ss_pred eEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCC---------cch-----h
Q 005746 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE---------PSF-----K 307 (679)
Q Consensus 244 KILlI~heLs--mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~---------~sf-----k 307 (679)
|||+|++... .||++..+.+|+.+|.+.||+|.+++...... ..+....++++...... ..+ .
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPK-GRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKK 79 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCc-chhhhccCceEEEeecccccccccccHHHHHHHHh
Confidence 6888887776 69999999999999999999999987654332 33333344444432111 001 1
Q ss_pred hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh-------HHHHHHHHHHhhcCCEEEEechhhHHHHHHHH
Q 005746 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-------REYFDRAKLVLDRVKLLVFLSESQTKQWLTWC 380 (679)
Q Consensus 308 ~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r-------reYfdr~k~vl~rvk~LIfvSesq~k~w~~~~ 380 (679)
...++|+||.++......+...+. . ...+.++++|... ..|....+.++..++.+|++|+...+..
T Consensus 80 ~~~~~Dii~~~~~~~~~~~~~~~~--~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~---- 152 (357)
T cd03795 80 LAKKADVIHLHFPNPLADLALLLL--P-RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETS---- 152 (357)
T ss_pred cCCCCCEEEEecCcchHHHHHHHh--c-cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHH----
Confidence 246799999887543211111111 1 2233444555421 1111223456788999999998876642
Q ss_pred HHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHH
Q 005746 381 EEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLL 460 (679)
Q Consensus 381 ~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~l 460 (679)
.... ..+.+..+||+|++.+.+ .+... .+. .+....++.+.|+++|++.+.||++.
T Consensus 153 ~~~~-~~~~~~~~i~~gi~~~~~--------------~~~~~------~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~ 208 (357)
T cd03795 153 PVLR-RFRDKVRVIPLGLDPARY--------------PRPDA------LEE---AIWRRAAGRPFFLFVGRLVYYKGLDV 208 (357)
T ss_pred HHhc-CCccceEEecCCCChhhc--------------CCcch------hhh---HhhcCCCCCcEEEEecccccccCHHH
Confidence 2111 112468999999976421 11110 001 23445677889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCC
Q 005746 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (679)
Q Consensus 461 LLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (679)
+++|++.+. +
T Consensus 209 li~a~~~l~----~------------------------------------------------------------------ 218 (357)
T cd03795 209 LLEAAAALP----D------------------------------------------------------------------ 218 (357)
T ss_pred HHHHHHhcc----C------------------------------------------------------------------
Confidence 999998652 1
Q ss_pred cccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc--hhHH
Q 005746 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVA 618 (679)
Q Consensus 541 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVa 618 (679)
..+++ +|++. ....++.++++.++.++|.|+|+. +++.
T Consensus 219 --------------------------------~~l~i---~G~g~-----~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 219 --------------------------------APLVI---VGEGP-----LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred --------------------------------cEEEE---EeCCh-----hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 12353 45542 334456666778999999999996 4689
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCC
Q 005746 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPT 665 (679)
Q Consensus 619 slysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~ 665 (679)
.+|++||++++||....|+||++++|||+||+|||+|+.++..+...
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~ 305 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVN 305 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHh
Confidence 99999999999996336999999999999999999999998887544
No 33
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.93 E-value=5.8e-23 Score=199.67 Aligned_cols=286 Identities=19% Similarity=0.205 Sum_probs=182.0
Q ss_pred eEEEEeCCCC-CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhc-CCeEEEEcCCCc------chhhhcCcCEE
Q 005746 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGEP------SFKTSMKADLV 315 (679)
Q Consensus 244 KILlI~heLs-mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~r-rgIkVl~~r~~~------sfk~~~kaDLV 315 (679)
||++|.+... .||++..+.+|+.+|.+.|++|.+++............. ............ .+....++|+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 6889988888 799999999999999999999998876654432221111 112222111111 11234689999
Q ss_pred EEcchh--HHHHHHHHHHh-cCCCCccEEEeeehh-h----HHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhccC
Q 005746 316 IAGSAV--CATWIDQYITR-FPAGGSQVVWWIMEN-R----REYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (679)
Q Consensus 316 ia~Sav--~aswI~qyia~-~pag~s~VvWwI~E~-r----reYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l 387 (679)
|.+... .+.+...++.. ......++++++|.. . ..+....+.++..++.++++|....+.+. . ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~---~-~~~-- 154 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALL---L-RAY-- 154 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHH---h-hcC--
Confidence 986521 00011111111 011234577778774 1 11112234567789999999733322211 1 111
Q ss_pred CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHH
Q 005746 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (679)
Q Consensus 388 ~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~ 467 (679)
..++.+||++++... +.+.. ..++.+...+.+.|+++|++.+.||++.|++|++.
T Consensus 155 ~~~~~~i~~~~~~~~--------------~~~~~-----------~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 209 (366)
T cd03822 155 PEKIAVIPHGVPDPP--------------AEPPE-----------SLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPL 209 (366)
T ss_pred CCcEEEeCCCCcCcc--------------cCCch-----------hhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHH
Confidence 347899999986531 11110 01345556778999999999999999999999998
Q ss_pred HHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCC
Q 005746 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (679)
Q Consensus 468 lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 547 (679)
+.++.++
T Consensus 210 ~~~~~~~------------------------------------------------------------------------- 216 (366)
T cd03822 210 LVAKHPD------------------------------------------------------------------------- 216 (366)
T ss_pred HHhhCCC-------------------------------------------------------------------------
Confidence 8664332
Q ss_pred CCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC---chhHHHHHHHc
Q 005746 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA---TTRVASLYSAA 624 (679)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~---~tdVaslysAA 624 (679)
.+++++ |.+.............+++.+++.++|.|.|. .+++..+|++|
T Consensus 217 -------------------------~~l~i~---G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~a 268 (366)
T cd03822 217 -------------------------VRLLVA---GETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAA 268 (366)
T ss_pred -------------------------eEEEEe---ccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhc
Confidence 344544 44322211011000023566899999999987 67999999999
Q ss_pred CEEEEcCCCCCC--CccHHHHHHHHcCCCEEEeCCCCCccCC
Q 005746 625 DVYVINSQGLGE--TFGRVTIEAMAFGVPKNISQIELSRKDP 664 (679)
Q Consensus 625 DV~VlpSq~~~E--gFGrV~IEAMA~GlPVV~S~~g~~r~~~ 664 (679)
|++|+||. .| +||.+++||||||+|||+|++++ .+..
T Consensus 269 d~~v~ps~--~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i 307 (366)
T cd03822 269 DVVVLPYR--SADQTQSGVLAYAIGFGKPVISTPVGH-AEEV 307 (366)
T ss_pred CEEEeccc--ccccccchHHHHHHHcCCCEEecCCCC-hhee
Confidence 99999997 88 99999999999999999999998 5433
No 34
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.93 E-value=1.3e-23 Score=221.38 Aligned_cols=309 Identities=16% Similarity=0.132 Sum_probs=195.6
Q ss_pred eEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH--------------------------hcC
Q 005746 244 KFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL--------------------------ARR 293 (679)
Q Consensus 244 KILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL--------------------------~rr 293 (679)
|||+|+.|.. .||...++-+|+++|.+.||+|.|++... +...... ...
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKY-GRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCC-cchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeC
Confidence 6899998864 58999999999999999999999887543 3222110 113
Q ss_pred CeEEEEcCCCc-------------c----------hh-------h--hcCcCEEEEcchhHHHHHHHHHHhcC----CCC
Q 005746 294 KIKVLEDRGEP-------------S----------FK-------T--SMKADLVIAGSAVCATWIDQYITRFP----AGG 337 (679)
Q Consensus 294 gIkVl~~r~~~-------------s----------fk-------~--~~kaDLVia~Sav~aswI~qyia~~p----ag~ 337 (679)
|++|+-..... . |. . ..++|+||+|..-++ .+..++.... ...
T Consensus 80 gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~-~~~~~l~~~~~~~~~~~ 158 (476)
T cd03791 80 GVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTG-LVPALLKEKYADPFFKN 158 (476)
T ss_pred CceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHH-HHHHHHHHhhccccCCC
Confidence 56655211100 0 00 1 258999999965432 2222222111 124
Q ss_pred ccEEEeeehhhH------HH----------------------HHHHHHHhhcCCEEEEechhhHHHHHHH-----HHHhh
Q 005746 338 SQVVWWIMENRR------EY----------------------FDRAKLVLDRVKLLVFLSESQTKQWLTW-----CEEEK 384 (679)
Q Consensus 338 s~VvWwI~E~rr------eY----------------------fdr~k~vl~rvk~LIfvSesq~k~w~~~-----~~eeg 384 (679)
.++++.+|.... .. +...+..+..++.++++|+..++...+. .+...
T Consensus 159 ~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~ 238 (476)
T cd03791 159 IKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLL 238 (476)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHH
Confidence 567888875310 00 0112345677899999998877653210 00000
Q ss_pred ccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCC--CCCEEEEEEeccCCCCCHHHHH
Q 005746 385 LKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLT--DQDMLVLSLSSINPGKGQLLLV 462 (679)
Q Consensus 385 i~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~--d~d~LVlsvGrInp~KGq~lLL 462 (679)
.....++.+||||+|.+.+..... ..+. ..++.+.+ +.+...+..+++++|++ ++.++|+++||+.++||+++|+
T Consensus 239 ~~~~~ki~~I~NGid~~~~~p~~~-~~~~-~~~~~~~~-~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li 315 (476)
T cd03791 239 RARAGKLSGILNGIDYDVWNPATD-PHLP-ANYSADDL-EGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLL 315 (476)
T ss_pred HhccCCeEEEeCCCcCcccCcccc-chhh-hcCCcccc-ccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHH
Confidence 011347899999998664321110 0000 00111111 12234567789999996 7889999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcc
Q 005746 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (679)
Q Consensus 463 eA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (679)
+|+..+.++.
T Consensus 316 ~a~~~l~~~~---------------------------------------------------------------------- 325 (476)
T cd03791 316 EALPELLELG---------------------------------------------------------------------- 325 (476)
T ss_pred HHHHHHHHcC----------------------------------------------------------------------
Confidence 9999876421
Q ss_pred cccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEE-ECCCch-hHHHH
Q 005746 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATT-RVASL 620 (679)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~-ftG~~t-dVasl 620 (679)
+++++ +|.+. . ..++.++.+++++ .++|. +.|... .+..+
T Consensus 326 ------------------------------~~lvi---~G~g~--~-~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 326 ------------------------------GQLVI---LGSGD--P-EYEEALRELAARY--PGRVAVLIGYDEALAHLI 367 (476)
T ss_pred ------------------------------cEEEE---EecCC--H-HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHH
Confidence 23454 45442 2 2445566666654 55665 456654 45789
Q ss_pred HHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 621 YSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 621 ysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
|++||++|+||. .|+||++.+||||||+|||+|++|+..+...+|
T Consensus 368 ~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~ 412 (476)
T cd03791 368 YAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDY 412 (476)
T ss_pred HHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCC
Confidence 999999999996 899999999999999999999999998866554
No 35
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.93 E-value=3.4e-23 Score=197.06 Aligned_cols=277 Identities=20% Similarity=0.215 Sum_probs=184.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc---c----------h---h
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---S----------F---K 307 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~---s----------f---k 307 (679)
||++|.+. .+|++..+.+|+++|.+.||+|.+++....... .+...++.++..+... . + .
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLL 76 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--ccccCCceEEeccccccccChHhHHHHHHHHHHHH
Confidence 68888888 789999999999999999999998875543321 4455677765433221 0 0 1
Q ss_pred hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH---------HHHH-HHHHHhhcCCEEEEechhhHHHHH
Q 005746 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---------EYFD-RAKLVLDRVKLLVFLSESQTKQWL 377 (679)
Q Consensus 308 ~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr---------eYfd-r~k~vl~rvk~LIfvSesq~k~w~ 377 (679)
...++|+|++++.... ++..+.... .....+++++|.... .++. ..+..+..++.++++|+...+...
T Consensus 77 ~~~~~dvv~~~~~~~~-~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 154 (359)
T cd03808 77 RKERPDIVHTHTPKPG-ILGRLAARL-AGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLAL 154 (359)
T ss_pred HhcCCCEEEEccccch-hHHHHHHHH-cCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHH
Confidence 2358999999864322 222222221 233455555553211 1111 123456678999999998877643
Q ss_pred HHHHHhhccC-CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCC
Q 005746 378 TWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (679)
Q Consensus 378 ~~~~eegi~l-~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~K 456 (679)
. .+... .....++|++++.+.+ .+... . ..++.+.|+++|++.+.|
T Consensus 155 ~----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--------~-------~~~~~~~i~~~G~~~~~k 201 (359)
T cd03808 155 K----LGIIKKKKTVLIPGSGVDLDRF--------------SPSPE--------P-------IPEDDPVFLFVARLLKDK 201 (359)
T ss_pred H----hcCCCcCceEEecCCCCChhhc--------------Ccccc--------c-------cCCCCcEEEEEecccccc
Confidence 2 22221 1235566777665421 11100 0 345678999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccccccc
Q 005746 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (679)
Q Consensus 457 Gq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (679)
|++.+++++..+.+..+
T Consensus 202 ~~~~li~~~~~l~~~~~--------------------------------------------------------------- 218 (359)
T cd03808 202 GIDELLEAARILKAKGP--------------------------------------------------------------- 218 (359)
T ss_pred CHHHHHHHHHHHHhcCC---------------------------------------------------------------
Confidence 99999999998765332
Q ss_pred CCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchh
Q 005746 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (679)
Q Consensus 537 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~td 616 (679)
+..+++ +|.+... .+.+.. +.+..++.+.|.|+|..++
T Consensus 219 -----------------------------------~~~l~i---~G~~~~~-~~~~~~---~~~~~~~~~~v~~~g~~~~ 256 (359)
T cd03808 219 -----------------------------------NVRLLL---VGDGDEE-NPAAIL---EIEKLGLEGRVEFLGFRDD 256 (359)
T ss_pred -----------------------------------CeEEEE---EcCCCcc-hhhHHH---HHHhcCCcceEEEeecccc
Confidence 233454 4554322 122221 3455788899999999999
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 617 VaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+..+|++||++++||. .|+||.+++||||||+|||+|+.++..+..++
T Consensus 257 ~~~~~~~adi~i~ps~--~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~ 304 (359)
T cd03808 257 VPELLAAADVFVLPSY--REGLPRVLLEAMAMGRPVIATDVPGCREAVID 304 (359)
T ss_pred HHHHHHhccEEEecCc--ccCcchHHHHHHHcCCCEEEecCCCchhhhhc
Confidence 9999999999999997 79999999999999999999999998876654
No 36
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.92 E-value=7.2e-24 Score=224.53 Aligned_cols=271 Identities=14% Similarity=0.113 Sum_probs=172.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEE-E-cC----------------CCc
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL-E-DR----------------GEP 304 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl-~-~r----------------~~~ 304 (679)
||||+|...+++|||++.+++||+.|.+.||+|.++.+...++..+++...--.++ . .+ +-.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 69999999999999999999999999999999999988766665443222100111 0 00 000
Q ss_pred c-------hhhhcCcCEEEEcchhH---HH-HHHHHHH--hcCCCCccEEEeeehhhH-----H----------------
Q 005746 305 S-------FKTSMKADLVIAGSAVC---AT-WIDQYIT--RFPAGGSQVVWWIMENRR-----E---------------- 350 (679)
Q Consensus 305 s-------fk~~~kaDLVia~Sav~---as-wI~qyia--~~pag~s~VvWwI~E~rr-----e---------------- 350 (679)
+ ++...+||+||.|..-. .. .+..+.. .......++||-.|+.-. .
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 1 11235899999986432 11 1112211 122334578887775310 0
Q ss_pred ----H----HHH-------HHH----HhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccC
Q 005746 351 ----Y----FDR-------AKL----VLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS 411 (679)
Q Consensus 351 ----Y----fdr-------~k~----vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~s 411 (679)
| +++ .+. +++.+..+|.+|+..++..... .+ ..++.|||||+|.+..
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~---~~---~~~i~vI~NGid~~~~-------- 226 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSL---YG---PGRCRIINNGIDMATE-------- 226 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHH---cC---CCCEEEeCCCcCcccc--------
Confidence 1 122 122 2233567888898877653221 12 2468999999985321
Q ss_pred CCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEec-c-CCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccc
Q 005746 412 LNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS-I-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (679)
Q Consensus 412 lntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGr-I-np~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~ 489 (679)
.|.++. ...+ .+++..+|+++|+ + .++||++.|++|++.+. +
T Consensus 227 ----~~~~~~---------~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~---------------- 270 (405)
T PRK10125 227 ----AILAEL---------PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---D---------------- 270 (405)
T ss_pred ----cccccc---------cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---C----------------
Confidence 111110 0001 1356678899999 4 58999999999998641 1
Q ss_pred ccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhccccccc
Q 005746 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (679)
Q Consensus 490 ~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 569 (679)
T Consensus 271 -------------------------------------------------------------------------------- 270 (405)
T PRK10125 271 -------------------------------------------------------------------------------- 270 (405)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc---hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHH
Q 005746 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT---TRVASLYSAADVYVINSQGLGETFGRVTIEAM 646 (679)
Q Consensus 570 ~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~---tdVaslysAADV~VlpSq~~~EgFGrV~IEAM 646 (679)
+..++++ |.+... ..+.|.++|+. .+++.+|++||+||+||. .|+||+|++|||
T Consensus 271 --~~~L~iv---G~g~~~----------------~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAm 327 (405)
T PRK10125 271 --KIELHTF---GKFSPF----------------TAGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEAL 327 (405)
T ss_pred --CeEEEEE---cCCCcc----------------cccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHH
Confidence 1234544 443211 02457777764 578999999999999995 999999999999
Q ss_pred HcCCCEEEeCCCCCccCCCC
Q 005746 647 AFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 647 A~GlPVV~S~~g~~r~~~~~ 666 (679)
|||+|||+|++||.++-..+
T Consensus 328 A~G~PVVat~~gG~~Eiv~~ 347 (405)
T PRK10125 328 SIGVPVIATHSDAAREVLQK 347 (405)
T ss_pred HcCCCEEEeCCCChHHhEeC
Confidence 99999999999998875443
No 37
>PLN02939 transferase, transferring glycosyl groups
Probab=99.92 E-value=6.1e-23 Score=237.19 Aligned_cols=308 Identities=16% Similarity=0.170 Sum_probs=205.3
Q ss_pred CCeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCCh-hHHh-------------------------
Q 005746 242 SRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-PELA------------------------- 291 (679)
Q Consensus 242 ~rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~-~EL~------------------------- 291 (679)
++|||+|..|.. .||-.-.+-.|..+|.+.||+|.|++... +.+. .+..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y-~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 559 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY-DCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTG 559 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC-cccChhhhhcccccceEEEEeecCceeEEEEEEE
Confidence 389999999985 58888999999999999999999876543 3322 1100
Q ss_pred -cCCeEEE--EcCC----------C--c-c---h---h---------hhcCcCEEEEcchhHHHH----HHHHHHhcCCC
Q 005746 292 -RRKIKVL--EDRG----------E--P-S---F---K---------TSMKADLVIAGSAVCATW----IDQYITRFPAG 336 (679)
Q Consensus 292 -rrgIkVl--~~r~----------~--~-s---f---k---------~~~kaDLVia~Sav~asw----I~qyia~~pag 336 (679)
..||+|+ +... + . . | . ...+|||||+|-.-++.. ...|.. ....
T Consensus 560 ~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~-~~~~ 638 (977)
T PLN02939 560 TVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAP-KGFN 638 (977)
T ss_pred EECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhh-ccCC
Confidence 0234443 1100 0 0 0 1 0 124899999996544321 122211 1122
Q ss_pred CccEEEeeehhh--H--------------HHH-----------HH---HHHHhhcCCEEEEechhhHHHHHHHHHHhhc-
Q 005746 337 GSQVVWWIMENR--R--------------EYF-----------DR---AKLVLDRVKLLVFLSESQTKQWLTWCEEEKL- 385 (679)
Q Consensus 337 ~s~VvWwI~E~r--r--------------eYf-----------dr---~k~vl~rvk~LIfvSesq~k~w~~~~~eegi- 385 (679)
..+++..||... . ++| .. -|.-+.+++.++++|...++...+. --+|+
T Consensus 639 ~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te-~G~GL~ 717 (977)
T PLN02939 639 SARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSE-GGRGLQ 717 (977)
T ss_pred CCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHH-hccchH
Confidence 335666666431 0 111 00 1222446799999999988775541 00111
Q ss_pred ---c-CCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC---CCEEEEEEeccCCCCCH
Q 005746 386 ---K-LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD---QDMLVLSLSSINPGKGQ 458 (679)
Q Consensus 386 ---~-l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d---~d~LVlsvGrInp~KGq 458 (679)
. ...+..+||||||.+.+..... ..-...|+.+.+. ++..-+..+|+++||++ +.++|++|||+.++||+
T Consensus 718 ~~L~~~~~Kl~gIlNGID~e~wnPatD--~~L~~~Ys~~dl~-GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGi 794 (977)
T PLN02939 718 DTLKFHSKKFVGILNGIDTDTWNPSTD--RFLKVQYNANDLQ-GKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGV 794 (977)
T ss_pred HHhccccCCceEEecceehhhcCCccc--cccccccChhhhh-hhhhhhHHHHHHhCCCcccccceEEEEeecCCcccCh
Confidence 1 1346799999999875432211 1112346776664 34455778999999985 46999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCC
Q 005746 459 LLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLS 538 (679)
Q Consensus 459 ~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (679)
++|++|+..+.+.
T Consensus 795 DlLleA~~~Ll~~------------------------------------------------------------------- 807 (977)
T PLN02939 795 HLIRHAIYKTAEL------------------------------------------------------------------- 807 (977)
T ss_pred HHHHHHHHHHhhc-------------------------------------------------------------------
Confidence 9999999876531
Q ss_pred CCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhH-
Q 005746 539 PSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV- 617 (679)
Q Consensus 539 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdV- 617 (679)
++++++ +|+|. .+...+.++.+++++++.++|.|+|..++.
T Consensus 808 ---------------------------------dvqLVI---vGdGp--~~~~e~eL~~La~~l~l~drV~FlG~~de~l 849 (977)
T PLN02939 808 ---------------------------------GGQFVL---LGSSP--VPHIQREFEGIADQFQSNNNIRLILKYDEAL 849 (977)
T ss_pred ---------------------------------CCEEEE---EeCCC--cHHHHHHHHHHHHHcCCCCeEEEEeccCHHH
Confidence 123453 45552 223456678888889999999999987654
Q ss_pred -HHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 618 -ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 618 -aslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
..+|++||+||+||+ .|+||+|++||||||+|+|++++||..+
T Consensus 850 ah~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~D 893 (977)
T PLN02939 850 SHSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLND 893 (977)
T ss_pred HHHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcc
Confidence 579999999999996 8999999999999999999999999876
No 38
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.92 E-value=4.7e-23 Score=198.43 Aligned_cols=284 Identities=21% Similarity=0.265 Sum_probs=190.1
Q ss_pred eEEEEeCCC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEE------cCCC--cc-------h
Q 005746 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE------DRGE--PS-------F 306 (679)
Q Consensus 244 KILlI~heL--smgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~------~r~~--~s-------f 306 (679)
|||++.+.. ..||++..+.+++.+|.+.||+|++++....+..... ....+.... .+.. .. .
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE-EVVVVRPFRVPTFKYPDFRLPLPIPRALIII 79 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc-ccccccccccccchhhhhhccccHHHHHHHH
Confidence 578888776 4689999999999999999999998876543322111 111111111 0000 00 0
Q ss_pred hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHH----------------HHHHHHhhcCCEEEEech
Q 005746 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF----------------DRAKLVLDRVKLLVFLSE 370 (679)
Q Consensus 307 k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYf----------------dr~k~vl~rvk~LIfvSe 370 (679)
....++|+||+++.....++...+.. ....++++++|..-..|. ...+..+..++.+++.|+
T Consensus 80 ~~~~~~Div~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPFSLGLLGLRVAR--KLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCchhhhhHHHHHHH--HcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 12357999999875433222222221 112345555553221111 122345677899999998
Q ss_pred hhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEe
Q 005746 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (679)
Q Consensus 371 sq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvG 450 (679)
...+.+ ...+.. .++.++|++++.+.+ .+.. ....+++++++++.+.|+++|
T Consensus 158 ~~~~~~----~~~~~~--~~~~vi~~~~~~~~~--------------~~~~--------~~~~~~~~~~~~~~~~i~~~G 209 (374)
T cd03817 158 KIADLL----REYGVK--RPIEVIPTGIDLDRF--------------EPVD--------GDDERRKLGIPEDEPVLLYVG 209 (374)
T ss_pred HHHHHH----HhcCCC--CceEEcCCccchhcc--------------Cccc--------hhHHHHhcCCCCCCeEEEEEe
Confidence 866653 333433 347899999876532 1111 112267788888999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccc
Q 005746 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (679)
Q Consensus 451 rInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (679)
++.+.||++.++++++.+.++.++
T Consensus 210 ~~~~~k~~~~l~~~~~~~~~~~~~-------------------------------------------------------- 233 (374)
T cd03817 210 RLAKEKNIDFLIRAFARLLKEEPD-------------------------------------------------------- 233 (374)
T ss_pred eeecccCHHHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 999999999999999988654322
Q ss_pred ccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEE
Q 005746 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (679)
Q Consensus 531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~f 610 (679)
..++++ |.+. ..+.++.++++.++.++|.|
T Consensus 234 ------------------------------------------~~l~i~---G~~~-----~~~~~~~~~~~~~~~~~v~~ 263 (374)
T cd03817 234 ------------------------------------------VKLVIV---GDGP-----EREELEELARELGLADRVIF 263 (374)
T ss_pred ------------------------------------------eEEEEE---eCCc-----hHHHHHHHHHHcCCCCcEEE
Confidence 234544 4432 23445666777899999999
Q ss_pred CCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 611 TPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 611 tG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+|.. +++..+|+.||++++||. .|+||.+++||||||+|||+++.++.++...+
T Consensus 264 ~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~ 319 (374)
T cd03817 264 TGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVAD 319 (374)
T ss_pred eccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheec
Confidence 9995 789999999999999996 89999999999999999999999998876554
No 39
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.92 E-value=4.9e-23 Score=217.11 Aligned_cols=283 Identities=16% Similarity=0.146 Sum_probs=186.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC-Ch-hHHh--c--CCeEEEEcC---------------
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LM-PELA--R--RKIKVLEDR--------------- 301 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg-L~-~EL~--r--rgIkVl~~r--------------- 301 (679)
|||.+|.++.. .=.+..+..=...|.++|++|.++++-+... .. +... + ..+..++..
T Consensus 1 m~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 47888888876 4446677777788999999999998754432 11 1111 0 111111000
Q ss_pred ----------CCcc-------h------------hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh---H
Q 005746 302 ----------GEPS-------F------------KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---R 349 (679)
Q Consensus 302 ----------~~~s-------f------------k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r---r 349 (679)
.... . ....++|+||+|...++.. ...+........++++++|... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~-~~~~~~~~~~~~~~~~t~Hg~d~~~~ 158 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVT-AAKLRELGVLRGKIATIFHGIDISSR 158 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHH-HHHHHHhCCCCCCeEEEEcccccccc
Confidence 0000 0 0134689999998655432 2333332221223445666321 1
Q ss_pred ----HHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHh
Q 005746 350 ----EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (679)
Q Consensus 350 ----eYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ek 425 (679)
.|....+.++.+++.+|++|+...++. .+.+++ .+++.|||+|++.+.+. +...
T Consensus 159 ~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l----~~~g~~-~~ki~vi~nGvd~~~f~--------------~~~~--- 216 (406)
T PRK15427 159 EVLNHYTPEYQQLFRRGDLMLPISDLWAGRL----QKMGCP-PEKIAVSRMGVDMTRFS--------------PRPV--- 216 (406)
T ss_pred hhhhhhhHHHHHHHHhCCEEEECCHHHHHHH----HHcCCC-HHHEEEcCCCCCHHHcC--------------CCcc---
Confidence 122223456788999999999877763 334443 24678999999866431 1000
Q ss_pred hHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccccc
Q 005746 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLL 505 (679)
Q Consensus 426 r~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~ 505 (679)
...++.+.|+++|++.+.||++.|++|++.+.++.++
T Consensus 217 ------------~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~------------------------------- 253 (406)
T PRK15427 217 ------------KAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVA------------------------------- 253 (406)
T ss_pred ------------ccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCC-------------------------------
Confidence 0123557799999999999999999999988654432
Q ss_pred ccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCC
Q 005746 506 QMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (679)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~s 585 (679)
..+++ +|+|.
T Consensus 254 -------------------------------------------------------------------~~l~i---vG~G~ 263 (406)
T PRK15427 254 -------------------------------------------------------------------FRYRI---LGIGP 263 (406)
T ss_pred -------------------------------------------------------------------EEEEE---EECch
Confidence 23454 45542
Q ss_pred CChHHHHHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCC----CCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 586 NKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 586 nk~~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~----~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
.++.++.+++++|++++|.|+|+. +++..+|++||+||+||.. ..||||++++||||||+|||+|++++
T Consensus 264 -----~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g 338 (406)
T PRK15427 264 -----WERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG 338 (406)
T ss_pred -----hHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC
Confidence 345677788889999999999985 6899999999999999961 13999999999999999999999999
Q ss_pred CccCCCCC
Q 005746 660 SRKDPTSG 667 (679)
Q Consensus 660 ~r~~~~~~ 667 (679)
..+...+|
T Consensus 339 ~~E~v~~~ 346 (406)
T PRK15427 339 IPELVEAD 346 (406)
T ss_pred chhhhcCC
Confidence 98866554
No 40
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=1.5e-22 Score=199.53 Aligned_cols=277 Identities=18% Similarity=0.211 Sum_probs=177.4
Q ss_pred eEEEEeCC-C--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc--c-----h-----hh
Q 005746 244 KFILIFHE-L--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S-----F-----KT 308 (679)
Q Consensus 244 KILlI~he-L--smgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~--s-----f-----k~ 308 (679)
||++|..+ . ..||++..+.+||.+|.+.||+|.+++.... ....+....|++++..+... . + ..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPY-PKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILH 79 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCC-CCCcccccCCceEEEcCCCCccchhhhHHHHHHHHH
Confidence 46666333 2 4699999999999999999999998875432 22223445678877543221 0 0 01
Q ss_pred ----hcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh----------HHHHHHH-HHHhhcCCEEEEechhhH
Q 005746 309 ----SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----------REYFDRA-KLVLDRVKLLVFLSESQT 373 (679)
Q Consensus 309 ----~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r----------reYfdr~-k~vl~rvk~LIfvSesq~ 373 (679)
..++|+||........++ ..+... +.++++++|... +.++... +..+..++.+|++|+...
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 155 (363)
T cd04955 80 ALFVKRDIDHVHALGPAIAPFL-PLLRLK---GKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIK 155 (363)
T ss_pred HHhccCCeEEEEecCccHHHHH-HHHHhc---CCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHH
Confidence 223455544332211111 111111 345666666431 1122221 234567899999999888
Q ss_pred HHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccC
Q 005746 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (679)
Q Consensus 374 k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrIn 453 (679)
+... +..+. ...+||||++.+. +.+ +...+++++++++.. ++++|++.
T Consensus 156 ~~~~---~~~~~----~~~~i~ngv~~~~--------------~~~----------~~~~~~~~~~~~~~~-i~~~G~~~ 203 (363)
T cd04955 156 EYLK---EKYGR----DSTYIPYGADHVV--------------SSE----------EDEILKKYGLEPGRY-YLLVGRIV 203 (363)
T ss_pred HHHH---HhcCC----CCeeeCCCcChhh--------------cch----------hhhhHHhcCCCCCcE-EEEEeccc
Confidence 7642 22232 2389999997542 111 112345677776654 67899999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccc
Q 005746 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (679)
Q Consensus 454 p~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (679)
+.||++.|++|++.+..
T Consensus 204 ~~Kg~~~li~a~~~l~~--------------------------------------------------------------- 220 (363)
T cd04955 204 PENNIDDLIEAFSKSNS--------------------------------------------------------------- 220 (363)
T ss_pred ccCCHHHHHHHHHhhcc---------------------------------------------------------------
Confidence 99999999999986521
Q ss_pred cccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC
Q 005746 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (679)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~ 613 (679)
+.+++++ |.+.....|. +.+.+.+++.++|.|+|.
T Consensus 221 --------------------------------------~~~l~iv---G~~~~~~~~~----~~~~~~~~~~~~V~~~g~ 255 (363)
T cd04955 221 --------------------------------------GKKLVIV---GNADHNTPYG----KLLKEKAAADPRIIFVGP 255 (363)
T ss_pred --------------------------------------CceEEEE---cCCCCcchHH----HHHHHHhCCCCcEEEccc
Confidence 1234544 4442222232 223335678899999998
Q ss_pred c--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 614 ~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
. +++..+|++||++|+||. ..|+||++++||||||+|||+|++++..+...+
T Consensus 256 ~~~~~~~~~~~~ad~~v~ps~-~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~ 309 (363)
T cd04955 256 IYDQELLELLRYAALFYLHGH-SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD 309 (363)
T ss_pred cChHHHHHHHHhCCEEEeCCc-cCCCCChHHHHHHHcCCCEEEecCCccceeecC
Confidence 5 678899999999999997 249999999999999999999999988775544
No 41
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.92 E-value=6.9e-24 Score=206.04 Aligned_cols=281 Identities=21% Similarity=0.226 Sum_probs=186.7
Q ss_pred eEEEEeCCCCC---CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEE---cC----CC-------cch
Q 005746 244 KFILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE---DR----GE-------PSF 306 (679)
Q Consensus 244 KILlI~heLsm---gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~---~r----~~-------~sf 306 (679)
||+++.+.+.. ||++..+.+|+++|.+.|+.|.+++.+.................. .. .. ...
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 57888888865 999999999999999999999988877654332221111111000 00 00 000
Q ss_pred hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh-------------HHHHHHHHHHhhcCCEEEEechhhH
Q 005746 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-------------REYFDRAKLVLDRVKLLVFLSESQT 373 (679)
Q Consensus 307 k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r-------------reYfdr~k~vl~rvk~LIfvSesq~ 373 (679)
....++|+||+++...... .....++++++|+.- ..+....+.++..++.++++|+...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 152 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATK 152 (365)
T ss_pred hhhcCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHH
Confidence 1225799999887433211 112334555666531 1111223456778999999999888
Q ss_pred HHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccC
Q 005746 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (679)
Q Consensus 374 k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrIn 453 (679)
+...+.. ++. ..+..++|++++.+.. .+... .. +......++...|+++|++.
T Consensus 153 ~~~~~~~---~~~-~~~~~vi~~~~~~~~~--------------~~~~~--------~~-~~~~~~~~~~~~i~~~G~~~ 205 (365)
T cd03809 153 RDLLRYL---GVP-PDKIVVIPLGVDPRFR--------------PPPAE--------AE-VLRALYLLPRPYFLYVGTIE 205 (365)
T ss_pred HHHHHHh---CcC-HHHEEeeccccCcccc--------------CCCch--------HH-HHHHhcCCCCCeEEEeCCCc
Confidence 7754332 221 2357899999976522 11110 01 33445566788999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccc
Q 005746 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (679)
Q Consensus 454 p~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (679)
+.||++.+++++..+.++.+.
T Consensus 206 ~~K~~~~~l~~~~~~~~~~~~----------------------------------------------------------- 226 (365)
T cd03809 206 PRKNLERLLEAFARLPAKGPD----------------------------------------------------------- 226 (365)
T ss_pred cccCHHHHHHHHHHHHHhcCC-----------------------------------------------------------
Confidence 999999999999998764432
Q ss_pred cccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC
Q 005746 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (679)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~ 613 (679)
..++++| .+... ....+..+ +..++.+.|.|+|.
T Consensus 227 ---------------------------------------~~l~i~G---~~~~~---~~~~~~~~-~~~~~~~~v~~~g~ 260 (365)
T cd03809 227 ---------------------------------------PKLVIVG---KRGWL---NEELLARL-RELGLGDRVRFLGY 260 (365)
T ss_pred ---------------------------------------CCEEEec---CCccc---cHHHHHHH-HHcCCCCeEEECCC
Confidence 2245444 33212 12222222 56789999999999
Q ss_pred c--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 614 ~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
. +++..+|++||++++||. .|+||++++||||+|+|||+|++++..+....
T Consensus 261 ~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~ 313 (365)
T cd03809 261 VSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVAGD 313 (365)
T ss_pred CChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCccceecC
Confidence 7 789999999999999996 89999999999999999999999998876543
No 42
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.92 E-value=3.4e-22 Score=191.98 Aligned_cols=285 Identities=21% Similarity=0.199 Sum_probs=188.4
Q ss_pred eEEEEeCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhH------HhcCCeEEEEcCCC----c-------
Q 005746 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE------LARRKIKVLEDRGE----P------- 304 (679)
Q Consensus 244 KILlI~heLsm--gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~E------L~rrgIkVl~~r~~----~------- 304 (679)
|||+|.+.... ||++..+..++.+|.++|++|++++.......... -...+++++..... .
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 68999998876 89999999999999999999998875543332211 12346666532210 0
Q ss_pred ---ch-------h--hhcCcCEEEEcch-hHHHHHHHHHHhcCCCCccEEEeeehhhH-----------------HHHHH
Q 005746 305 ---SF-------K--TSMKADLVIAGSA-VCATWIDQYITRFPAGGSQVVWWIMENRR-----------------EYFDR 354 (679)
Q Consensus 305 ---sf-------k--~~~kaDLVia~Sa-v~aswI~qyia~~pag~s~VvWwI~E~rr-----------------eYfdr 354 (679)
++ . ...++|+||+++. .........+... ...++++++|+... .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARL--KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKL 158 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHh--cCCCEEEEehhhcchhHHHccCccccchHHHHHHHH
Confidence 00 0 1457999999972 2222222222221 13456777775311 11111
Q ss_pred HHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHH
Q 005746 355 AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVR 434 (679)
Q Consensus 355 ~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svR 434 (679)
.+.++..++.++++|+...+.+. ..++. ..++.+||++++.+.... ... ... +
T Consensus 159 ~~~~~~~~d~vi~~s~~~~~~~~----~~~~~-~~~~~~i~~~~~~~~~~~--------------~~~-------~~~-~ 211 (394)
T cd03794 159 ERLIYRRADAIVVISPGMREYLV----RRGVP-PEKISVIPNGVDLELFKP--------------PPA-------DES-L 211 (394)
T ss_pred HHHHHhcCCEEEEECHHHHHHHH----hcCCC-cCceEEcCCCCCHHHcCC--------------ccc-------hhh-h
Confidence 24557788999999998877643 23333 246899999998753211 000 001 4
Q ss_pred HHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCc
Q 005746 435 KEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLS 514 (679)
Q Consensus 435 kelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~ 514 (679)
.+....++.++++++|++.+.||++.+++|+..+.+. ++
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~---------------------------------------- 250 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PD---------------------------------------- 250 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CC----------------------------------------
Confidence 4566677889999999999999999999999987653 22
Q ss_pred ccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHH
Q 005746 515 SNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEI 594 (679)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~ 594 (679)
..+++ +|.+.. .+.
T Consensus 251 ----------------------------------------------------------~~l~i---~G~~~~-----~~~ 264 (394)
T cd03794 251 ----------------------------------------------------------IRFLI---VGDGPE-----KEE 264 (394)
T ss_pred ----------------------------------------------------------eEEEE---eCCccc-----HHH
Confidence 23353 455432 222
Q ss_pred HHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCc-----cHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 595 LEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETF-----GRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 595 L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgF-----GrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+..+....++ ++|.|+|.. +++..+|++||++|+||. .|++ |.+++||||||+|||+|+.++.++....+
T Consensus 265 ~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~ 341 (394)
T cd03794 265 LKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEA 341 (394)
T ss_pred HHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccC
Confidence 3333344455 579999974 699999999999999997 5654 88899999999999999999988766553
No 43
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.92 E-value=9.3e-23 Score=192.55 Aligned_cols=283 Identities=23% Similarity=0.268 Sum_probs=191.8
Q ss_pred eEEEEeCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEE----cCCC------------cc
Q 005746 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE----DRGE------------PS 305 (679)
Q Consensus 244 KILlI~heLsm--gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~----~r~~------------~s 305 (679)
||++|.+.... ||+...+..|+.+|.+.|++|.+++........... ........ .... ..
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE-VGGIVVVRPPPLLRVRRLLLLLLLALRLRR 79 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee-ecCcceecCCcccccchhHHHHHHHHHHHH
Confidence 58888888753 799999999999999999999988765443222111 11111110 0000 00
Q ss_pred hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHH------------HHHHHHHHhhcCCEEEEechhhH
Q 005746 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE------------YFDRAKLVLDRVKLLVFLSESQT 373 (679)
Q Consensus 306 fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rre------------Yfdr~k~vl~rvk~LIfvSesq~ 373 (679)
+....++|+|+.+......+.. ..... ...++++++|+.... +......++..++.++++|+...
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~~-~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 80 LLRRERFDVVHAHDWLALLAAA-LAARL--LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred HhhhcCCcEEEEechhHHHHHH-HHHHh--cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 1123579999998765433321 12221 233466666654221 11223456778899999999887
Q ss_pred HHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccC
Q 005746 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (679)
Q Consensus 374 k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrIn 453 (679)
+.+.. .+.....+..++|++++.+. +.+.. ...+.......+.+.|+++|++.
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~--------------~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~ 209 (374)
T cd03801 157 EELRE----LGGVPPEKITVIPNGVDTER--------------FRPAP---------RAARRRLGIPEDEPVILFVGRLV 209 (374)
T ss_pred HHHHh----cCCCCCCcEEEecCcccccc--------------cCccc---------hHHHhhcCCcCCCeEEEEecchh
Confidence 76432 22221246899999986542 11111 12345566677889999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccc
Q 005746 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (679)
Q Consensus 454 p~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (679)
+.||.+.+++|+..+..+.+
T Consensus 210 ~~k~~~~~i~~~~~~~~~~~------------------------------------------------------------ 229 (374)
T cd03801 210 PRKGVDLLLEALAKLRKEYP------------------------------------------------------------ 229 (374)
T ss_pred hhcCHHHHHHHHHHHhhhcC------------------------------------------------------------
Confidence 99999999999998765432
Q ss_pred cccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC
Q 005746 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (679)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~ 613 (679)
+..++++| .+. ....++.+++..++.+.|.|+|.
T Consensus 230 --------------------------------------~~~l~i~G---~~~-----~~~~~~~~~~~~~~~~~v~~~g~ 263 (374)
T cd03801 230 --------------------------------------DVRLVIVG---DGP-----LREELEALAAELGLGDRVTFLGF 263 (374)
T ss_pred --------------------------------------CeEEEEEe---CcH-----HHHHHHHHHHHhCCCcceEEEec
Confidence 23345444 331 34455566667899999999999
Q ss_pred c--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCC
Q 005746 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPT 665 (679)
Q Consensus 614 ~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~ 665 (679)
. +++..+|+.||++++||. .|+||.+++||||+|+|||+++.++.++...
T Consensus 264 ~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~ 315 (374)
T cd03801 264 VPDEDLPALYAAADVFVLPSL--YEGFGLVLLEAMAAGLPVVASDVGGIPEVVE 315 (374)
T ss_pred cChhhHHHHHHhcCEEEecch--hccccchHHHHHHcCCcEEEeCCCChhHHhc
Confidence 7 899999999999999997 7999999999999999999999998887655
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.91 E-value=6.1e-23 Score=197.79 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=175.8
Q ss_pred eEEEEeCCCCC---CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEc----CC-------------C
Q 005746 244 KFILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED----RG-------------E 303 (679)
Q Consensus 244 KILlI~heLsm---gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~----r~-------------~ 303 (679)
||++|.|.... ||+++.+.+||.+|.+.||+|++++...... .............. .. .
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPP-RQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCC-CcccccccceeeccccccccCCCchhhhhHHHhc
Confidence 68899888753 7999999999999999999999887554322 11111222222111 00 0
Q ss_pred cc---------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEechhhHH
Q 005746 304 PS---------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTK 374 (679)
Q Consensus 304 ~s---------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSesq~k 374 (679)
.. +....++|+||+++....... ++........+++..+|+...... .........+.++++|+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~~~~-~~~~~~~~~d~ii~~s~~~~~ 156 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWLICP-RQGLFKKGGDAVIAPSRFLLD 156 (359)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeeeecc-hhhhhccCCCEEEEeCHHHHH
Confidence 00 112358999999874221111 111111112345555554321110 111222344889999998877
Q ss_pred HHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCC
Q 005746 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (679)
Q Consensus 375 ~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp 454 (679)
.+. +.+.. ..++.+||++++.+... +.. . +.+++.+.|+++|++.+
T Consensus 157 ~~~----~~~~~-~~~~~vi~n~~~~~~~~--------------~~~--------------~-~~~~~~~~i~~~G~~~~ 202 (359)
T cd03823 157 RYV----ANGLF-AEKISVIRNGIDLDRAK--------------RPR--------------R-APPGGRLRFGFIGQLTP 202 (359)
T ss_pred HHH----HcCCC-ccceEEecCCcChhhcc--------------ccc--------------c-CCCCCceEEEEEecCcc
Confidence 643 33332 34689999999764211 000 0 34567889999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccccc
Q 005746 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (679)
Q Consensus 455 ~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (679)
.||++.++++++.+.+ ++
T Consensus 203 ~k~~~~li~~~~~l~~--~~------------------------------------------------------------ 220 (359)
T cd03823 203 HKGVDLLLEAFKRLPR--GD------------------------------------------------------------ 220 (359)
T ss_pred ccCHHHHHHHHHHHHh--cC------------------------------------------------------------
Confidence 9999999999998754 21
Q ss_pred ccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc
Q 005746 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (679)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~ 614 (679)
.++++ +|.+.... + ..... ++.+.|.++|+.
T Consensus 221 --------------------------------------~~l~i---~G~~~~~~-~----~~~~~---~~~~~v~~~g~~ 251 (359)
T cd03823 221 --------------------------------------IELVI---VGNGLELE-E----ESYEL---EGDPRVEFLGAY 251 (359)
T ss_pred --------------------------------------cEEEE---EcCchhhh-H----HHHhh---cCCCeEEEeCCC
Confidence 23453 45542211 1 11111 677899999996
Q ss_pred --hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 615 --TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 615 --tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+++.++|++||++|+||. ..|+||++++||||||+|||+|+.++..+...+
T Consensus 252 ~~~~~~~~~~~ad~~i~ps~-~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~ 304 (359)
T cd03823 252 PQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVIASDIGGMAELVRD 304 (359)
T ss_pred CHHHHHHHHHhCCEEEEcCc-ccCCCChHHHHHHHCCCCEEECCCCCHHHHhcC
Confidence 899999999999999996 479999999999999999999999998876555
No 45
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.91 E-value=2e-22 Score=197.45 Aligned_cols=280 Identities=19% Similarity=0.152 Sum_probs=184.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCCh--hHHhcCCeEEEEcCCC-------cchh---hhcC
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM--PELARRKIKVLEDRGE-------PSFK---TSMK 311 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~--~EL~rrgIkVl~~r~~-------~sfk---~~~k 311 (679)
||+++.+.+..+ ++..+.+++..|.++||+|.++++....... .........+...... ..+. ...+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688888887544 8899999999999999999998876543211 1111111111000000 0011 1368
Q ss_pred cCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHH---HHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCC
Q 005746 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388 (679)
Q Consensus 312 aDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rre---Yfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~ 388 (679)
+|+||+++.....++..+..... +.++++.+|..... .....+.++..++.++++|+...+.+.+. .+.. .
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~---~~~~-~ 153 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASRLG--GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRL---LGCD-P 153 (355)
T ss_pred CCEEEECCCCchHHHHHHHHHhc--CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHh---cCCC-c
Confidence 99999987533333322222221 23444445432110 00133456778999999999887764332 1332 2
Q ss_pred CCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHH
Q 005746 389 SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLM 468 (679)
Q Consensus 389 sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~l 468 (679)
.++.++|++++.+.+. +.. ....++...|+++|++.+.||++.+++|++.+
T Consensus 154 ~~~~vi~~~~d~~~~~--------------~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l 204 (355)
T cd03799 154 DKIHVVHCGVDLERFP--------------PRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALL 204 (355)
T ss_pred ccEEEEeCCcCHHHcC--------------Ccc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHH
Confidence 4689999999865321 000 11235678899999999999999999999987
Q ss_pred HHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCC
Q 005746 469 IEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNT 548 (679)
Q Consensus 469 ieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 548 (679)
.++.+
T Consensus 205 ~~~~~--------------------------------------------------------------------------- 209 (355)
T cd03799 205 KDRGI--------------------------------------------------------------------------- 209 (355)
T ss_pred hhcCC---------------------------------------------------------------------------
Confidence 65422
Q ss_pred CccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCE
Q 005746 549 DAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADV 626 (679)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV 626 (679)
+..+++ +|.+.. .+.++.+.+.+++++.|.|+|.. +++..+|++||+
T Consensus 210 -----------------------~~~l~i---~G~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi 258 (355)
T cd03799 210 -----------------------DFRLDI---VGDGPL-----RDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADL 258 (355)
T ss_pred -----------------------CeEEEE---EECCcc-----HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCE
Confidence 123454 344421 23344556667899999999997 799999999999
Q ss_pred EEEcCCCCC------CCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 627 YVINSQGLG------ETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 627 ~VlpSq~~~------EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+++||. . |+||++++||||||+|||+|+.++.++..+++
T Consensus 259 ~l~~s~--~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~ 303 (355)
T cd03799 259 FVLPSV--TAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDG 303 (355)
T ss_pred EEecce--ecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCC
Confidence 999997 6 99999999999999999999999988765544
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=2.4e-22 Score=194.61 Aligned_cols=275 Identities=19% Similarity=0.234 Sum_probs=177.5
Q ss_pred eEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEE--EcC----------CCcchh--
Q 005746 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDR----------GEPSFK-- 307 (679)
Q Consensus 244 KILlI~heLs--mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl--~~r----------~~~sfk-- 307 (679)
||++|.+... .||++..+.+|+.+|.+.||+|.+++...... .... ...+.+. ... ....+.
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRE-SEGP-ARVVPVPSVPLPGYPEIRLALPPRRRVRRL 78 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhh-ccCC-CCceeecccccCcccceEecccchhhHHHH
Confidence 5788876664 38999999999999999999999876443221 1100 0111111 000 001111
Q ss_pred -hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHH-------------HHHHHHhhcCCEEEEechhhH
Q 005746 308 -TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF-------------DRAKLVLDRVKLLVFLSESQT 373 (679)
Q Consensus 308 -~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYf-------------dr~k~vl~rvk~LIfvSesq~ 373 (679)
...++|+||+++.....|+...+.. ....++++++|+.-..+. ...+.+...++.+++.|+...
T Consensus 79 ~~~~~pdii~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 156 (364)
T cd03814 79 LDAFAPDVVHIATPGPLGLAALRAAR--RLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLA 156 (364)
T ss_pred HHhcCCCEEEEeccchhhHHHHHHHH--HcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHH
Confidence 2358999998865333333322222 122345666664321111 112345667899999998877
Q ss_pred HHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccC
Q 005746 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (679)
Q Consensus 374 k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrIn 453 (679)
+.. ...+ ..+..++|++++.+.+ .+... ....+++++ ..+..+++++|++.
T Consensus 157 ~~~----~~~~---~~~~~~~~~g~~~~~~--------------~~~~~-------~~~~~~~~~-~~~~~~i~~~G~~~ 207 (364)
T cd03814 157 DEL----RARG---FRRVRLWPRGVDTELF--------------HPRRR-------DEALRARLG-PPDRPVLLYVGRLA 207 (364)
T ss_pred HHH----hccC---CCceeecCCCcccccc--------------Ccccc-------cHHHHHHhC-CCCCeEEEEEeccc
Confidence 642 1122 2367899999876532 11100 112345566 56678999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccc
Q 005746 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (679)
Q Consensus 454 p~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (679)
+.||++.++++++.+.++ ++
T Consensus 208 ~~k~~~~~i~~~~~l~~~-~~----------------------------------------------------------- 227 (364)
T cd03814 208 PEKNLEALLDADLPLRRR-PP----------------------------------------------------------- 227 (364)
T ss_pred cccCHHHHHHHHHHhhhc-CC-----------------------------------------------------------
Confidence 999999999999987653 22
Q ss_pred cccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC
Q 005746 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (679)
Q Consensus 534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~ 613 (679)
..+++ +|.+.. .+.++ ++.++|.|+|.
T Consensus 228 ---------------------------------------~~l~i---~G~~~~-----~~~~~------~~~~~v~~~g~ 254 (364)
T cd03814 228 ---------------------------------------VRLVI---VGDGPA-----RARLE------ARYPNVHFLGF 254 (364)
T ss_pred ---------------------------------------ceEEE---EeCCch-----HHHHh------ccCCcEEEEec
Confidence 23454 444321 11122 46689999995
Q ss_pred --chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 614 --~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
.+++..+|++||++|+||. .|+||++++||||||+|||+++.++.++..+.
T Consensus 255 ~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~ 307 (364)
T cd03814 255 LDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTD 307 (364)
T ss_pred cCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcC
Confidence 6799999999999999996 89999999999999999999999998876654
No 47
>PRK14098 glycogen synthase; Provisional
Probab=99.91 E-value=3.1e-22 Score=217.38 Aligned_cols=307 Identities=15% Similarity=0.095 Sum_probs=198.4
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhH---Hhc-----------------------
Q 005746 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---LAR----------------------- 292 (679)
Q Consensus 243 rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~E---L~r----------------------- 292 (679)
+|||+|..|.. .||-.-.+-.|..+|.+.||+|.+|+. .-+.+... +..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMP-KYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcC-CCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 89999999985 578888999999999999999997754 33333221 100
Q ss_pred ----CCeEEE--E-----cCC----Cc-----------c---hh---------hhcCcCEEEEcchhHHHHHHHHHHhc-
Q 005746 293 ----RKIKVL--E-----DRG----EP-----------S---FK---------TSMKADLVIAGSAVCATWIDQYITRF- 333 (679)
Q Consensus 293 ----rgIkVl--~-----~r~----~~-----------s---fk---------~~~kaDLVia~Sav~aswI~qyia~~- 333 (679)
.+++++ + .+. +. . |. ...+||+||+|...+ .++..++...
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t-~l~~~~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYA-GLVPLLLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHH-HHHHHHHHHHh
Confidence 012222 1 000 00 0 00 013799999997433 3444444211
Q ss_pred ---C-CCCccEEEeeehhhH---------------HHHH----------HHHHHhhcCCEEEEechhhHHHHHHH-HHHh
Q 005746 334 ---P-AGGSQVVWWIMENRR---------------EYFD----------RAKLVLDRVKLLVFLSESQTKQWLTW-CEEE 383 (679)
Q Consensus 334 ---p-ag~s~VvWwI~E~rr---------------eYfd----------r~k~vl~rvk~LIfvSesq~k~w~~~-~~ee 383 (679)
+ ....++|..||.... ++++ ..+..+.+++.++++|+..++...+- -...
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~ 243 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAF 243 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCc
Confidence 1 112356666664210 1111 12335677899999999887763320 0001
Q ss_pred hcc-----CCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC--CCEEEEEEeccCCCC
Q 005746 384 KLK-----LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGK 456 (679)
Q Consensus 384 gi~-----l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d--~d~LVlsvGrInp~K 456 (679)
|+. ...++.+||||||.+.+.....+ .+ .-.|+.+.+.. +...+..+++++|++. +.++|+++||+.++|
T Consensus 244 gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~-~~-~~~~~~~~~~~-k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~K 320 (489)
T PRK14098 244 GLDKVLEERKMRLHGILNGIDTRQWNPSTDK-LI-KKRYSIERLDG-KLENKKALLEEVGLPFDEETPLVGVIINFDDFQ 320 (489)
T ss_pred ChHHHHHhcCCCeeEEeCCccccccCCcccc-cc-cccCCcchhhh-HHHHHHHHHHHhCCCCccCCCEEEEeccccccC
Confidence 221 13468999999998754322110 01 11344444432 2345778899999974 568999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccccccc
Q 005746 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (679)
Q Consensus 457 Gq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (679)
|+++|++|+..+.++
T Consensus 321 G~d~li~a~~~l~~~----------------------------------------------------------------- 335 (489)
T PRK14098 321 GAELLAESLEKLVEL----------------------------------------------------------------- 335 (489)
T ss_pred cHHHHHHHHHHHHhc-----------------------------------------------------------------
Confidence 999999999987531
Q ss_pred CCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc--
Q 005746 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT-- 614 (679)
Q Consensus 537 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~-- 614 (679)
+++++++ |+|. .. .++.++.+++++ +++|.|+|..
T Consensus 336 -----------------------------------~~~lviv---G~G~--~~-~~~~l~~l~~~~--~~~V~~~g~~~~ 372 (489)
T PRK14098 336 -----------------------------------DIQLVIC---GSGD--KE-YEKRFQDFAEEH--PEQVSVQTEFTD 372 (489)
T ss_pred -----------------------------------CcEEEEE---eCCC--HH-HHHHHHHHHHHC--CCCEEEEEecCH
Confidence 1235654 4442 22 345677777754 5889999975
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCC
Q 005746 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDP 664 (679)
Q Consensus 615 tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~ 664 (679)
+.+..+|++||+||+||+ .|+||++.+||||||+|+|++++||..+..
T Consensus 373 ~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v 420 (489)
T PRK14098 373 AFFHLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVETI 420 (489)
T ss_pred HHHHHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCceee
Confidence 456899999999999996 999999999999999999999999987643
No 48
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=2.9e-22 Score=199.28 Aligned_cols=274 Identities=19% Similarity=0.166 Sum_probs=179.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCC----C-------------cchhh
Q 005746 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG----E-------------PSFKT 308 (679)
Q Consensus 246 LlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~----~-------------~sfk~ 308 (679)
|+++++.-.++.+..+.++++.|. |++|++++....+....+....++.++.... . ..+..
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (367)
T cd05844 2 VLIFRPLLLAPSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLLR 79 (367)
T ss_pred EEEEeCCCCCCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHHH
Confidence 344555556669999999999994 7888777655544433333333444331100 0 00123
Q ss_pred hcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh----H--H-------HHHHHHHHhhcCCEEEEechhhHHH
Q 005746 309 SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----R--E-------YFDRAKLVLDRVKLLVFLSESQTKQ 375 (679)
Q Consensus 309 ~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r----r--e-------Yfdr~k~vl~rvk~LIfvSesq~k~ 375 (679)
..++|+||++....+.++- .++.. .+ .++++.+|+.. . . +......++..++.+|++|+...+.
T Consensus 80 ~~~~dvvh~~~~~~~~~~~-~~~~~-~~-~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (367)
T cd05844 80 RHRPDLVHAHFGFDGVYAL-PLARR-LG-VPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDR 156 (367)
T ss_pred hhCCCEEEeccCchHHHHH-HHHHH-cC-CCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHH
Confidence 4689999998654332221 11111 12 23454455311 0 0 1111234567889999999988776
Q ss_pred HHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCC
Q 005746 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (679)
Q Consensus 376 w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~ 455 (679)
.. +.+++ ..++.++|++++.+.+ .+.. ...+.+.++++|++.+.
T Consensus 157 ~~----~~~~~-~~~i~vi~~g~d~~~~--------------~~~~-----------------~~~~~~~i~~~G~~~~~ 200 (367)
T cd05844 157 LL----ALGFP-PEKVHVHPIGVDTAKF--------------TPAT-----------------PARRPPRILFVGRFVEK 200 (367)
T ss_pred HH----HcCCC-HHHeEEecCCCCHHhc--------------CCCC-----------------CCCCCcEEEEEEeeccc
Confidence 43 33443 2357899999976532 1110 12345689999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccc
Q 005746 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (679)
Q Consensus 456 KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (679)
||++.|++|++.+.++.++
T Consensus 201 K~~~~li~a~~~l~~~~~~------------------------------------------------------------- 219 (367)
T cd05844 201 KGPLLLLEAFARLARRVPE------------------------------------------------------------- 219 (367)
T ss_pred cChHHHHHHHHHHHHhCCC-------------------------------------------------------------
Confidence 9999999999988764432
Q ss_pred cCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc-
Q 005746 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT- 614 (679)
Q Consensus 536 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~- 614 (679)
+++++ +|.+. ..+.++.+++++|+.++|.|+|..
T Consensus 220 -------------------------------------~~l~i---vG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (367)
T cd05844 220 -------------------------------------VRLVI---IGDGP-----LLAALEALARALGLGGRVTFLGAQP 254 (367)
T ss_pred -------------------------------------eEEEE---EeCch-----HHHHHHHHHHHcCCCCeEEECCCCC
Confidence 34564 45431 345567777888999999999996
Q ss_pred -hhHHHHHHHcCEEEEcCCC----CCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 615 -TRVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 615 -tdVaslysAADV~VlpSq~----~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
++++.+|++||++|+||.. ..|+||++++||||||+|||+|+.++..+...+
T Consensus 255 ~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~ 311 (367)
T cd05844 255 HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVED 311 (367)
T ss_pred HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheec
Confidence 6899999999999999961 159999999999999999999999998875433
No 49
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.91 E-value=4.9e-22 Score=227.14 Aligned_cols=324 Identities=14% Similarity=0.174 Sum_probs=191.6
Q ss_pred cCCcccccccCCCCeEEEEeCCCC-----------CCCHHHHHHHHHHHH--------HHCCC----eEEEEEeCCCCCC
Q 005746 230 CDRKGDFARFVWSRKFILIFHELS-----------MTGAPLSMMELATEL--------LSCGA----TVSAVVLSKRGGL 286 (679)
Q Consensus 230 c~~k~~f~~~~~~rKILlI~heLs-----------mgGAplsmmeLAteL--------~s~G~----~VsaVvLs~~GgL 286 (679)
|.=..=++|+++.+||++|....+ .||.-.++.+||++| +..|+ +|.+++--.....
T Consensus 243 ~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~ 322 (784)
T TIGR02470 243 SVLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAE 322 (784)
T ss_pred hHHHHHHhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcc
Confidence 444556789999999998775552 366667899999974 68999 5556653322111
Q ss_pred h----hH--Hh--cCCeEEEEcCCCc----------c----------h--------hh--hcCcCEEEEcchhHHHHHHH
Q 005746 287 M----PE--LA--RRKIKVLEDRGEP----------S----------F--------KT--SMKADLVIAGSAVCATWIDQ 328 (679)
Q Consensus 287 ~----~E--L~--rrgIkVl~~r~~~----------s----------f--------k~--~~kaDLVia~Sav~aswI~q 328 (679)
. +. .. ..++.|+..+... + | .. ..++|+||+|.+..+ +...
T Consensus 323 ~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~g-lva~ 401 (784)
T TIGR02470 323 GTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGN-LVAS 401 (784)
T ss_pred ccccccccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchH-HHHH
Confidence 1 11 11 1456665422110 0 0 00 236999999975432 3333
Q ss_pred HHHhcCCCCccEE---------------Eee-ehhhHHHHH-H---HHHHhhcCCEEEEechhhHH-------HHHH---
Q 005746 329 YITRFPAGGSQVV---------------WWI-MENRREYFD-R---AKLVLDRVKLLVFLSESQTK-------QWLT--- 378 (679)
Q Consensus 329 yia~~pag~s~Vv---------------WwI-~E~rreYfd-r---~k~vl~rvk~LIfvSesq~k-------~w~~--- 378 (679)
.+++. .+.+++. .|- +|. +..|. + ...+++.++.+|+.|..... |+..
T Consensus 402 lla~~-lgVP~v~t~HsL~~~K~~~~g~~~~~~e~-~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ 479 (784)
T TIGR02470 402 LLARK-LGVTQCTIAHALEKTKYPDSDIYWQEFED-KYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQA 479 (784)
T ss_pred HHHHh-cCCCEEEECCcchhhcccccccccccchh-HHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhccc
Confidence 33211 1122111 111 111 11222 1 23567889999998853211 2110
Q ss_pred -----HHH-HhhccC-CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHH------HHHHHHHHcCC--CCCC
Q 005746 379 -----WCE-EEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL------LRDSVRKEMGL--TDQD 443 (679)
Q Consensus 379 -----~~~-eegi~l-~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~------lR~svRkelGL--~d~d 443 (679)
.+. ..||.. +.++.|||.|+|.+.++..... ..+....+.. .+...++.+|+ .++.
T Consensus 480 ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~---------~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~k 550 (784)
T TIGR02470 480 FTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDK---------EKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNK 550 (784)
T ss_pred ccccceeeeecCccCCcCCeEEECCCcChhhcCCCCch---------hhhhhhhhcchhhhccchhhHHHHhCCCCCCCC
Confidence 000 123432 3478999999998765432110 0000000000 11234577886 5677
Q ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccc
Q 005746 444 MLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSE 523 (679)
Q Consensus 444 ~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~ 523 (679)
++|+++||+.+.||++.|++|+..+.+..
T Consensus 551 piIl~VGRL~~~KGid~LIeA~~~l~~l~--------------------------------------------------- 579 (784)
T TIGR02470 551 PIIFSMARLDRVKNLTGLVECYGRSPKLR--------------------------------------------------- 579 (784)
T ss_pred cEEEEEeCCCccCCHHHHHHHHHHhHhhC---------------------------------------------------
Confidence 89999999999999999999998653211
Q ss_pred cccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCC--CCC---hHHHHHHHHHH
Q 005746 524 SFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSK--SNK---VPYVKEILEFL 598 (679)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~--snk---~~y~k~~L~~L 598 (679)
+++.+++||.-... +.. ..+. +.+..+
T Consensus 580 -----------------------------------------------~~~~LVIVGGg~~~~~s~d~ee~~~i-~~L~~l 611 (784)
T TIGR02470 580 -----------------------------------------------ELVNLVVVAGKLDAKESKDREEQAEI-EKMHNL 611 (784)
T ss_pred -----------------------------------------------CCeEEEEEeCCcccccccchhHHHHH-HHHHHH
Confidence 12345665521110 011 1123 346667
Q ss_pred HHhCCCCCcEEECCCc---hhHHHHHH----HcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 599 SQHSNLSKAMLWTPAT---TRVASLYS----AADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 599 ~~~lnLs~~V~ftG~~---tdVaslys----AADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
++++||.++|.|+|+. .+++.+|. ++||||+||. .|+||+|++||||||+|||+|++||.++...+
T Consensus 612 a~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~d 684 (784)
T TIGR02470 612 IDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQD 684 (784)
T ss_pred HHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC
Confidence 8889999999999974 46677775 2479999995 99999999999999999999999998874433
No 50
>PLN02275 transferase, transferring glycosyl groups
Probab=99.90 E-value=1.8e-21 Score=201.51 Aligned_cols=290 Identities=14% Similarity=0.059 Sum_probs=181.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC-eEEEEEeCCCCCChhHHhcCCeEEEEcCC--C-------------cch---------
Q 005746 252 LSMTGAPLSMMELATELLSCGA-TVSAVVLSKRGGLMPELARRKIKVLEDRG--E-------------PSF--------- 306 (679)
Q Consensus 252 LsmgGAplsmmeLAteL~s~G~-~VsaVvLs~~GgL~~EL~rrgIkVl~~r~--~-------------~sf--------- 306 (679)
++..|++..|.+++..|.+.|+ +|++++....+...+.+...+|+|+..+. . .++
T Consensus 12 ~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (371)
T PLN02275 12 LGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLL 91 (371)
T ss_pred ecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999875 79999876655555556666788876531 1 011
Q ss_pred ----hhhcCcCEEEEcch--hHHHHHHHHHHhcCCCCccEEEeeehhhH--------------HHHH-HHHHHhhcCCEE
Q 005746 307 ----KTSMKADLVIAGSA--VCATWIDQYITRFPAGGSQVVWWIMENRR--------------EYFD-RAKLVLDRVKLL 365 (679)
Q Consensus 307 ----k~~~kaDLVia~Sa--v~aswI~qyia~~pag~s~VvWwI~E~rr--------------eYfd-r~k~vl~rvk~L 365 (679)
....++|+||+++. +.+.++..+++. ..+.+ ++.++|.... ..+. ..+.+...++.+
T Consensus 92 ~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~-~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~i 169 (371)
T PLN02275 92 WFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW-LRRAK-FVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGH 169 (371)
T ss_pred HHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH-HhCCC-EEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEE
Confidence 12368999999752 222222222221 12233 3334443210 0111 123446678999
Q ss_pred EEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEE
Q 005746 366 VFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDML 445 (679)
Q Consensus 366 IfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~L 445 (679)
|++|+...+.... ..+++ ..||||++ .+.+. |.... . .+. .++..+
T Consensus 170 i~~S~~~~~~l~~---~~g~~----i~vi~n~~-~~~f~----------~~~~~-----------~----~~~-~~~~~~ 215 (371)
T PLN02275 170 LCVTKAMQHELDQ---NWGIR----ATVLYDQP-PEFFR----------PASLE-----------I----RLR-PNRPAL 215 (371)
T ss_pred EECCHHHHHHHHH---hcCCC----eEEECCCC-HHHcC----------cCCch-----------h----ccc-CCCcEE
Confidence 9999998876321 12432 68899984 23210 10000 0 011 234567
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccc
Q 005746 446 VLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESF 525 (679)
Q Consensus 446 VlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~ 525 (679)
++++|++.+.||++.|++|++.+..+.... .+.. .+
T Consensus 216 i~~~grl~~~k~~~~li~a~~~l~~~~~~~-------------~~~~----------~~--------------------- 251 (371)
T PLN02275 216 VVSSTSWTPDEDFGILLEAAVMYDRRVAAR-------------LNES----------DS--------------------- 251 (371)
T ss_pred EEEeCceeccCCHHHHHHHHHHHHhhhhhc-------------cccc----------cc---------------------
Confidence 889999999999999999998875322110 0000 00
Q ss_pred cccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCC
Q 005746 526 TQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS 605 (679)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs 605 (679)
+.+....+++.++++ +|+|. .++.++.+++++|++
T Consensus 252 -------------------------------------~~~~~~~~~~i~l~i---vG~G~-----~~~~l~~~~~~~~l~ 286 (371)
T PLN02275 252 -------------------------------------ASGKQSLYPRLLFII---TGKGP-----QKAMYEEKISRLNLR 286 (371)
T ss_pred -------------------------------------cccccccCCCeEEEE---EeCCC-----CHHHHHHHHHHcCCC
Confidence 000112245667774 56653 345677788889998
Q ss_pred CcEEECC-C--chhHHHHHHHcCEEEEcCC-CCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 606 KAMLWTP-A--TTRVASLYSAADVYVINSQ-GLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 606 ~~V~ftG-~--~tdVaslysAADV~VlpSq-~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+ |.|.+ + .++++.+|++|||+|+|+. ..+|+||++++||||||+|||+|+.|+.++..++|
T Consensus 287 ~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g 351 (371)
T PLN02275 287 H-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDG 351 (371)
T ss_pred c-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCC
Confidence 7 66644 4 6899999999999998632 13699999999999999999999999988765544
No 51
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.90 E-value=1.2e-21 Score=207.40 Aligned_cols=283 Identities=16% Similarity=0.092 Sum_probs=182.1
Q ss_pred EEEEeCCCCCC-CHHHHHHHHHHHHHHC--CCeEEEEEeCCCCCChhHHh----------cCCeEEEEc--CC---C---
Q 005746 245 FILIFHELSMT-GAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELA----------RRKIKVLED--RG---E--- 303 (679)
Q Consensus 245 ILlI~heLsmg-GAplsmmeLAteL~s~--G~~VsaVvLs~~GgL~~EL~----------rrgIkVl~~--r~---~--- 303 (679)
|.|+=++++.| |||+.+++.+.+|+++ +++|++++-...-.-...|. ..+++++.. .. .
T Consensus 3 ~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
T cd03806 3 VGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAST 82 (419)
T ss_pred EEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeecccc
Confidence 55666678887 9999999999999998 78877765332211101110 123342221 10 0
Q ss_pred -cc--------------hhh--hcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehh------h------------
Q 005746 304 -PS--------------FKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN------R------------ 348 (679)
Q Consensus 304 -~s--------------fk~--~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~------r------------ 348 (679)
.. ++. ..+||++|.++.....+.- ...++ ..+++.++|.- .
T Consensus 83 ~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~--~~~~~--~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 83 YPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPL--VRLLG--GCPVGAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred CCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHH--HHHhc--CCeEEEEecCCcchHHHHHHHhhccccccC
Confidence 00 011 2369999988744332221 11122 22566666621 1
Q ss_pred --------------HHH---HH-HHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhcccc
Q 005746 349 --------------REY---FD-RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTC 410 (679)
Q Consensus 349 --------------reY---fd-r~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~ 410 (679)
..| |+ ..+..+..++.+|+.|+.+.++... .. ....++.|||++++.+.+.
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~----~~-~~~~~~~vi~~gvd~~~~~------ 227 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRS----LW-KRNTKPSIVYPPCDVEELL------ 227 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHH----Hh-CcCCCcEEEcCCCCHHHhc------
Confidence 001 01 1123456789999999998877432 21 1123689999998754221
Q ss_pred CCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccc
Q 005746 411 SLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKK 490 (679)
Q Consensus 411 slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~ 490 (679)
+.. . ...++..+|+++|++.|.||++++|+|++.+.++.|..
T Consensus 228 --------~~~---------~------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--------------- 269 (419)
T cd03806 228 --------KLP---------L------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--------------- 269 (419)
T ss_pred --------ccc---------c------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc---------------
Confidence 000 0 11345678999999999999999999999988755430
Q ss_pred cccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccc
Q 005746 491 SSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ 570 (679)
Q Consensus 491 ~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 570 (679)
..
T Consensus 270 ------------------------------------------------------------------------------~~ 271 (419)
T cd03806 270 ------------------------------------------------------------------------------IK 271 (419)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred cceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHc
Q 005746 571 QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF 648 (679)
Q Consensus 571 ~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~ 648 (679)
++.+++++|.... ....+ ..+.|+++++.++|+++|.|+|. .+++..+|+.||++|+||. .|+||++++|||||
T Consensus 272 ~~~~lvivG~~~~-~~~~~-~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~ 347 (419)
T cd03806 272 EKIKLVLIGSCRN-EDDEK-RVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAA 347 (419)
T ss_pred CceEEEEEcCCCC-cccHH-HHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHc
Confidence 2355676553211 11123 45567888889999999999998 5799999999999999996 89999999999999
Q ss_pred CCCEEEeCCCCCcc
Q 005746 649 GVPKNISQIELSRK 662 (679)
Q Consensus 649 GlPVV~S~~g~~r~ 662 (679)
|+|||++++|+..+
T Consensus 348 G~pvIa~~~ggp~~ 361 (419)
T cd03806 348 GLIPLAHASGGPLL 361 (419)
T ss_pred CCcEEEEcCCCCch
Confidence 99999999977543
No 52
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.90 E-value=1.2e-21 Score=186.41 Aligned_cols=286 Identities=23% Similarity=0.312 Sum_probs=191.2
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcC----------CeEEE--EcCCC------
Q 005746 245 FILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----------KIKVL--EDRGE------ 303 (679)
Q Consensus 245 ILlI~heLsm---gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rr----------gIkVl--~~r~~------ 303 (679)
||+|.|.... ||++..+.+++.+|.+.|++|++++.............. ..... .....
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5788888875 899999999999999999999998765433222111000 00000 00000
Q ss_pred ---cchhh--hcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHH-------HHHHHHHHhhcCCEEEEechh
Q 005746 304 ---PSFKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------YFDRAKLVLDRVKLLVFLSES 371 (679)
Q Consensus 304 ---~sfk~--~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rre-------Yfdr~k~vl~rvk~LIfvSes 371 (679)
..+.. ..++|+|+++......++...+... ...++++++|..... +....+.++.+++.++++|+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 158 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRK--LGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEA 158 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHh--cCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHH
Confidence 01112 5689999998654444433333221 123466666653211 122234667889999999998
Q ss_pred hHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEec
Q 005746 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (679)
Q Consensus 372 q~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGr 451 (679)
..+.... .++. ..++.++|++++.+.+ .+... . .. .+++..++.+.++++|+
T Consensus 159 ~~~~~~~----~~~~-~~~~~~i~~~~~~~~~--------------~~~~~------~-~~--~~~~~~~~~~~i~~~g~ 210 (377)
T cd03798 159 LADELKA----LGID-PEKVTVIPNGVDTERF--------------SPADR------A-EA--RKLGLPEDKKVILFVGR 210 (377)
T ss_pred HHHHHHH----hcCC-CCceEEcCCCcCcccC--------------CCcch------H-HH--HhccCCCCceEEEEecc
Confidence 8776432 2222 3468999999876421 11111 0 01 45567778899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccc
Q 005746 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (679)
Q Consensus 452 Inp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (679)
+.+.||++.+++++..+.++.+
T Consensus 211 ~~~~k~~~~li~~~~~~~~~~~---------------------------------------------------------- 232 (377)
T cd03798 211 LVPRKGIDYLIEALARLLKKRP---------------------------------------------------------- 232 (377)
T ss_pred CccccCHHHHHHHHHHHHhcCC----------------------------------------------------------
Confidence 9999999999999998765422
Q ss_pred cccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEEC
Q 005746 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (679)
Q Consensus 532 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ft 611 (679)
+..+++ +|.+. ....++.+.++.++.+.|.+.
T Consensus 233 ----------------------------------------~~~l~i---~g~~~-----~~~~~~~~~~~~~~~~~v~~~ 264 (377)
T cd03798 233 ----------------------------------------DVHLVI---VGDGP-----LREALEALAAELGLEDRVTFL 264 (377)
T ss_pred ----------------------------------------CeEEEE---EcCCc-----chHHHHHHHHhcCCcceEEEe
Confidence 223443 45542 123345556678899999999
Q ss_pred CCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCCC
Q 005746 612 PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSGT 668 (679)
Q Consensus 612 G~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~~ 668 (679)
|.. +++.++|+.||++++||. .|+||.+++||||||+|||+|+.++..+...++.
T Consensus 265 g~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~ 321 (377)
T cd03798 265 GAVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMACGLPVVATDVGGIPEIITDGE 321 (377)
T ss_pred CCCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhcCCCEEEecCCChHHHhcCCc
Confidence 995 679999999999999996 7999999999999999999999998887665544
No 53
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.90 E-value=5.8e-22 Score=231.26 Aligned_cols=201 Identities=15% Similarity=0.208 Sum_probs=133.5
Q ss_pred HHHhhcCCEEEEechhhHH-HHHHHH--H-----------Hhhcc----CCCCcEEeeCCCchhhhhhhccccC---CCC
Q 005746 356 KLVLDRVKLLVFLSESQTK-QWLTWC--E-----------EEKLK----LRSQPAVVPLSVNDELAFVAGFTCS---LNT 414 (679)
Q Consensus 356 k~vl~rvk~LIfvSesq~k-~w~~~~--~-----------eegi~----l~sq~~VVP~gVndElafvagi~~s---lnt 414 (679)
..++..++.+|+.|..... +|.-.- . ..|+. ...++.|||+|||.+.|....-... +..
T Consensus 376 e~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~ 455 (1050)
T TIGR02468 376 ELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGN 455 (1050)
T ss_pred HHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccc
Confidence 4568889999999877664 443210 0 00111 0237899999999886543211000 000
Q ss_pred --CCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccc
Q 005746 415 --PTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSS 492 (679)
Q Consensus 415 --p~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~ 492 (679)
....+. ......+++ +..+++.++|+++||+.|.||++.||+|+..+.+..+.
T Consensus 456 ~~~~~~~~------~~~~~~l~r-~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~------------------ 510 (1050)
T TIGR02468 456 EEHPAKPD------PPIWSEIMR-FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLREL------------------ 510 (1050)
T ss_pred cccccccc------chhhHHHHh-hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccC------------------
Confidence 000000 011223333 44577888999999999999999999999987542111
Q ss_pred cccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccc
Q 005746 493 LTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQ 572 (679)
Q Consensus 493 ~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 572 (679)
++
T Consensus 511 ------------------------------------------------------------------------------~n 512 (1050)
T TIGR02468 511 ------------------------------------------------------------------------------AN 512 (1050)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred eEEEEEEeeCCCCCC-------hHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHc----CEEEEcCCCCCCCcc
Q 005746 573 ALKILIGSVGSKSNK-------VPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAA----DVYVINSQGLGETFG 639 (679)
Q Consensus 573 a~lvLiG~VGs~snk-------~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAA----DV~VlpSq~~~EgFG 639 (679)
.+ +++ |.+... .++.. .+..++++++|.++|.|+|+ .++++.+|.+| ||||+||. .|+||
T Consensus 513 L~-LIi---G~gdd~d~l~~~~~~~l~-~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFG 585 (1050)
T TIGR02468 513 LT-LIM---GNRDDIDEMSSGSSSVLT-SVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFG 585 (1050)
T ss_pred EE-EEE---ecCchhhhhhccchHHHH-HHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCC
Confidence 12 333 332111 12333 45667888999999999997 68999999988 69999995 99999
Q ss_pred HHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 640 RVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 640 rV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+|+|||||||+|||+|++|+.++...+
T Consensus 586 LvlLEAMAcGlPVVASdvGG~~EII~~ 612 (1050)
T TIGR02468 586 LTLIEAAAHGLPMVATKNGGPVDIHRV 612 (1050)
T ss_pred HHHHHHHHhCCCEEEeCCCCcHHHhcc
Confidence 999999999999999999998875443
No 54
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.90 E-value=6.3e-22 Score=215.47 Aligned_cols=271 Identities=15% Similarity=0.097 Sum_probs=173.0
Q ss_pred CCCeEEEEeCCCC--CCCHHHHHHHHHHHHHHCC-CeEEEEEeCCCCC---------------ChhH--H---hcCCe--
Q 005746 241 WSRKFILIFHELS--MTGAPLSMMELATELLSCG-ATVSAVVLSKRGG---------------LMPE--L---ARRKI-- 295 (679)
Q Consensus 241 ~~rKILlI~heLs--mgGAplsmmeLAteL~s~G-~~VsaVvLs~~Gg---------------L~~E--L---~rrgI-- 295 (679)
++|||.+++...- ++|...++..++.+|.+.| |+|++|....... -.+| + ....+
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 4688988876653 8999999999999999999 7999987532210 0011 0 00111
Q ss_pred -EEEEcCCCcc-h----------------hhhcCcCEEEEcchhHHHHH--HHHHHhcCCCCccEEEeeehhhHHHHHHH
Q 005746 296 -KVLEDRGEPS-F----------------KTSMKADLVIAGSAVCATWI--DQYITRFPAGGSQVVWWIMENRREYFDRA 355 (679)
Q Consensus 296 -kVl~~r~~~s-f----------------k~~~kaDLVia~Sav~aswI--~qyia~~pag~s~VvWwI~E~rreYfdr~ 355 (679)
+-++.+.+.. | ....++|+||+++.....|+ ...++.. . .. ++..+|.+.-+|+.+.
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k-~-~~-vV~tyHT~y~~Y~~~~ 159 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTK-F-RL-VIGIVHTNYLEYVKRE 159 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhc-C-Cc-EEEEECCChHHHHHHh
Confidence 1111111111 1 12367999999998776675 3222211 1 22 5555676555554321
Q ss_pred -----H--------HHh--hcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChh
Q 005746 356 -----K--------LVL--DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPE 420 (679)
Q Consensus 356 -----k--------~vl--~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspe 420 (679)
+ ..+ ..++.+|..|+...+. . + ...+.++|||.+.+ .+.
T Consensus 160 ~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l----~-~-------~~i~~v~GVd~~~f--------------~~~ 213 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQDY----P-R-------SIICNVHGVNPKFL--------------EIG 213 (462)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHHH----h-h-------CEEecCceechhhc--------------CCC
Confidence 1 111 2367888888754331 1 1 12233478876632 111
Q ss_pred hHHHhhHHHHHHHHHHcCCCCC--CEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccc
Q 005746 421 KMREKRNLLRDSVRKEMGLTDQ--DMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHH 498 (679)
Q Consensus 421 k~~ekr~~lR~svRkelGL~d~--d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~ 498 (679)
. + . .++..+ .++ ..+++++||+.+.||++.||+|++.+.+..|
T Consensus 214 ~----~----~-~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~------------------------- 258 (462)
T PLN02846 214 K----L----K-LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELS------------------------- 258 (462)
T ss_pred c----c----c-HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCC-------------------------
Confidence 1 0 1 222222 344 3468999999999999999999998765332
Q ss_pred cccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEE
Q 005746 499 LRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILI 578 (679)
Q Consensus 499 lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLi 578 (679)
+++++
T Consensus 259 -------------------------------------------------------------------------~~~l~-- 263 (462)
T PLN02846 259 -------------------------------------------------------------------------GLEVD-- 263 (462)
T ss_pred -------------------------------------------------------------------------CeEEE--
Confidence 23345
Q ss_pred EeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 579 GSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 579 G~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
++|+|. .++.|+.++.++++...| |+|. .+..++|+++||||+||. .||||+|++||||||+|||+++.+
T Consensus 264 -ivGdGp-----~~~~L~~~a~~l~l~~~v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~ 333 (462)
T PLN02846 264 -LYGSGE-----DSDEVKAAAEKLELDVRV-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHP 333 (462)
T ss_pred -EECCCc-----cHHHHHHHHHhcCCcEEE-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCC
Confidence 467774 355677788888887555 8886 566689999999999996 999999999999999999999998
Q ss_pred CC
Q 005746 659 LS 660 (679)
Q Consensus 659 ~~ 660 (679)
+.
T Consensus 334 ~~ 335 (462)
T PLN02846 334 SN 335 (462)
T ss_pred Cc
Confidence 63
No 55
>PLN02949 transferase, transferring glycosyl groups
Probab=99.89 E-value=3.8e-21 Score=208.40 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=177.5
Q ss_pred CCeEEEEeCCCCCC-CHHHHHHHHHHHHHHCCCeEEEEEeCCC-CCChhH-----HhcCCeEE------EEc-CCC----
Q 005746 242 SRKFILIFHELSMT-GAPLSMMELATELLSCGATVSAVVLSKR-GGLMPE-----LARRKIKV------LED-RGE---- 303 (679)
Q Consensus 242 ~rKILlI~heLsmg-GAplsmmeLAteL~s~G~~VsaVvLs~~-GgL~~E-----L~rrgIkV------l~~-r~~---- 303 (679)
+++|.++=++++-| |||+.+.+.+.+|.++|+++.+++.+.. +.-.++ ..+.+|++ +.. ++.
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~~ 112 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIEE 112 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecccccccc
Confidence 45677777788766 9999999999999999996555544422 111122 22344522 212 111
Q ss_pred ---cch--------------hhh-cCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh-----------------
Q 005746 304 ---PSF--------------KTS-MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----------------- 348 (679)
Q Consensus 304 ---~sf--------------k~~-~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r----------------- 348 (679)
..| ... ...|.|+..+.-.+.++. +.++ ...++++++|.--
T Consensus 113 ~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~p--l~~~--~~~~v~~yvH~p~~~~dm~~~v~~~~~~~~ 188 (463)
T PLN02949 113 ETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYP--LARL--FGCKVVCYTHYPTISSDMISRVRDRSSMYN 188 (463)
T ss_pred ccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHH--HHHh--cCCcEEEEEeCCcchHHHHHHHhhcccccC
Confidence 111 001 023345554432222321 1121 1356777777320
Q ss_pred ---------------HHHHHHHH----HHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccc
Q 005746 349 ---------------REYFDRAK----LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFT 409 (679)
Q Consensus 349 ---------------reYfdr~k----~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~ 409 (679)
..|+.... .....++.+|+.|+.+.+.... .. ..++++.||+++++.+.+. .
T Consensus 189 ~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~----~~-~~~~~i~vvyp~vd~~~~~--~-- 259 (463)
T PLN02949 189 NDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA----LW-RIPERIKRVYPPCDTSGLQ--A-- 259 (463)
T ss_pred ccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH----Hc-CCCCCeEEEcCCCCHHHcc--c--
Confidence 11222111 1135678999999988876432 11 2234678999998754210 0
Q ss_pred cCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccc
Q 005746 410 CSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (679)
Q Consensus 410 ~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~ 489 (679)
. +. .-+.+...++++|++.|.||++++|+|++.+.++.+.
T Consensus 260 -------~-~~-----------------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~--------------- 299 (463)
T PLN02949 260 -------L-PL-----------------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA--------------- 299 (463)
T ss_pred -------C-Cc-----------------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---------------
Confidence 0 00 0013446789999999999999999999988753321
Q ss_pred ccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhccccccc
Q 005746 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (679)
Q Consensus 490 ~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 569 (679)
.
T Consensus 300 -------------------------------------------------------------------------------~ 300 (463)
T PLN02949 300 -------------------------------------------------------------------------------D 300 (463)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHH
Q 005746 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMA 647 (679)
Q Consensus 570 ~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA 647 (679)
.++.+++++|.... ....+|. +.|+.+++++||+++|.|+|.. +++..+|+.||++|+||. .|+||++++||||
T Consensus 301 ~~~~~LvIvG~~~~-~~~~~~~-~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA 376 (463)
T PLN02949 301 VPRPKLQFVGSCRN-KEDEERL-QKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMA 376 (463)
T ss_pred CCCcEEEEEeCCCC-cccHHHH-HHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHH
Confidence 13445676553211 1123444 4577788889999999999985 799999999999999995 9999999999999
Q ss_pred cCCCEEEeCCCCCc
Q 005746 648 FGVPKNISQIELSR 661 (679)
Q Consensus 648 ~GlPVV~S~~g~~r 661 (679)
+|+|||++++||..
T Consensus 377 ~G~PVIa~~~gGp~ 390 (463)
T PLN02949 377 AGAVPIAHNSAGPK 390 (463)
T ss_pred cCCcEEEeCCCCCc
Confidence 99999999999864
No 56
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.88 E-value=2.5e-21 Score=207.42 Aligned_cols=217 Identities=20% Similarity=0.211 Sum_probs=152.5
Q ss_pred cCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh-------------------HH---HHH-HHHHHhhcCCEEE
Q 005746 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-------------------RE---YFD-RAKLVLDRVKLLV 366 (679)
Q Consensus 310 ~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r-------------------re---Yfd-r~k~vl~rvk~LI 366 (679)
.++|+||+++.-.+.++...++.. . +.++++..|... .. +|. ..+.++..++.++
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~-~-~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR-R-GTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH-h-CCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 478999999753344444333322 1 223555555320 00 111 1234567889999
Q ss_pred EechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEE
Q 005746 367 FLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV 446 (679)
Q Consensus 367 fvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LV 446 (679)
++|+...+. ..+.+++ ++++.|||||++.+.+ .+.. . -...++.++|
T Consensus 250 ~~s~~~~~~----~~~~g~~-~~ki~vIpNgid~~~f--------------~~~~---------~-----~~~~~~~~~i 296 (475)
T cd03813 250 TLYEGNRER----QIEDGAD-PEKIRVIPNGIDPERF--------------APAR---------R-----ARPEKEPPVV 296 (475)
T ss_pred ecCHHHHHH----HHHcCCC-HHHeEEeCCCcCHHHc--------------CCcc---------c-----cccCCCCcEE
Confidence 999987654 3344544 2468999999986532 1110 0 0234577899
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccc
Q 005746 447 LSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFT 526 (679)
Q Consensus 447 lsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~ 526 (679)
+++|++.|.||++.|++|++.+.++.|+
T Consensus 297 ~~vGrl~~~Kg~~~li~a~~~l~~~~p~---------------------------------------------------- 324 (475)
T cd03813 297 GLIGRVVPIKDIKTFIRAAAIVRKKIPD---------------------------------------------------- 324 (475)
T ss_pred EEEeccccccCHHHHHHHHHHHHHhCCC----------------------------------------------------
Confidence 9999999999999999999988765432
Q ss_pred ccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCC
Q 005746 527 QLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK 606 (679)
Q Consensus 527 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~ 606 (679)
+++++ +|++.....|. +.++.+++++|+.+
T Consensus 325 ----------------------------------------------~~l~I---vG~g~~~~~~~-~e~~~li~~l~l~~ 354 (475)
T cd03813 325 ----------------------------------------------AEGWV---IGPTDEDPEYA-EECRELVESLGLED 354 (475)
T ss_pred ----------------------------------------------eEEEE---ECCCCcChHHH-HHHHHHHHHhCCCC
Confidence 34554 45543233444 45677888899999
Q ss_pred cEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 607 ~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
+|.|+| ..++..+|++||++|+||. .|+||++++||||||+|||+|++|+.++...+
T Consensus 355 ~V~f~G-~~~v~~~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~ 411 (475)
T cd03813 355 NVKFTG-FQNVKEYLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEG 411 (475)
T ss_pred eEEEcC-CccHHHHHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcC
Confidence 999999 8899999999999999996 99999999999999999999999998875544
No 57
>PLN00142 sucrose synthase
Probab=99.87 E-value=1e-20 Score=217.00 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=129.8
Q ss_pred HHHhhcCCEEEEechhhHH-------HHHHH--------HH-HhhccC-CCCcEEeeCCCchhhhhhhcc--------cc
Q 005746 356 KLVLDRVKLLVFLSESQTK-------QWLTW--------CE-EEKLKL-RSQPAVVPLSVNDELAFVAGF--------TC 410 (679)
Q Consensus 356 k~vl~rvk~LIfvSesq~k-------~w~~~--------~~-eegi~l-~sq~~VVP~gVndElafvagi--------~~ 410 (679)
..+++.++.+|+.+..... |+... ++ -.|+.. +.++.|||.|+|.+.++..+. .+
T Consensus 470 ~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n 549 (815)
T PLN00142 470 LIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHP 549 (815)
T ss_pred HHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcc
Confidence 4567788888887754432 22211 11 023321 347889999998876543221 01
Q ss_pred CCCCCCCChhhHHHhhHHHHHHHHHHcCC--CCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccc
Q 005746 411 SLNTPTSSPEKMREKRNLLRDSVRKEMGL--TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGR 488 (679)
Q Consensus 411 slntp~fspek~~ekr~~lR~svRkelGL--~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~ 488 (679)
+++.-.|++ ...++.+|+ .++..+|+++||+.+.||++.|++|++.+.+..
T Consensus 550 ~I~~~l~~~-----------~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~---------------- 602 (815)
T PLN00142 550 SIEELLYSP-----------EQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLR---------------- 602 (815)
T ss_pred cchhhcCCh-----------HHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhC----------------
Confidence 111111221 123457786 455679999999999999999999998764322
Q ss_pred cccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccc
Q 005746 489 KKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDG 568 (679)
Q Consensus 489 ~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 568 (679)
T Consensus 603 -------------------------------------------------------------------------------- 602 (815)
T PLN00142 603 -------------------------------------------------------------------------------- 602 (815)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEEeeCCCCC--ChHHH--HHHHHHHHHhCCCCCcEEECCCch------hHHHHHH-HcCEEEEcCCCCCCC
Q 005746 569 KQQQALKILIGSVGSKSN--KVPYV--KEILEFLSQHSNLSKAMLWTPATT------RVASLYS-AADVYVINSQGLGET 637 (679)
Q Consensus 569 ~~~~a~lvLiG~VGs~sn--k~~y~--k~~L~~L~~~lnLs~~V~ftG~~t------dVaslys-AADV~VlpSq~~~Eg 637 (679)
+++.++++|....... ..+.. .+.+..+++++++.++|.|+|... ++..+|+ ++||||+||. .|+
T Consensus 603 --~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~Eg 678 (815)
T PLN00142 603 --ELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEA 678 (815)
T ss_pred --CCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccC
Confidence 1234576653211110 11111 133667888899999999999743 3455555 5799999995 999
Q ss_pred ccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 638 FGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 638 FGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
||+|++||||||+|||+|++||.++...+
T Consensus 679 FGLvvLEAMA~GlPVVATdvGG~~EIV~d 707 (815)
T PLN00142 679 FGLTVVEAMTCGLPTFATCQGGPAEIIVD 707 (815)
T ss_pred CCHHHHHHHHcCCCEEEcCCCCHHHHhcC
Confidence 99999999999999999999998875444
No 58
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.87 E-value=1.6e-20 Score=194.42 Aligned_cols=267 Identities=15% Similarity=0.143 Sum_probs=166.0
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCCh---hHHhc--CCeEEEEcCCC-------------
Q 005746 245 FILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLM---PELAR--RKIKVLEDRGE------------- 303 (679)
Q Consensus 245 ILlI~heLsm---gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~---~EL~r--rgIkVl~~r~~------------- 303 (679)
||+++|.+.. .|..+-+..++++|.+. |+|+++++.....-. +.+.. ..+.+++....
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTG 79 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCC
Confidence 5788888763 68889999999999665 999999987543212 12211 13333332100
Q ss_pred --------cc--hh-------hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhh---------------HHH
Q 005746 304 --------PS--FK-------TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---------------REY 351 (679)
Q Consensus 304 --------~s--fk-------~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~r---------------reY 351 (679)
.+ +. ...++|+||+++...+.+ +.....+.+ +++-.|... +.+
T Consensus 80 ~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~----~~~~~~~~p-~i~~~~d~~~~~~~~~~~~~~~~~~~~ 154 (397)
T TIGR03087 80 EPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQY----VTPHVRGVP-RIVDFVDVDSDKWLQYARTKRWPLRWI 154 (397)
T ss_pred CCCcchhhCCHHHHHHHHHHHhhCCCCEEEEecccccee----ccccccCCC-eEeehhhHHHHHHHHHHhccCcchhHH
Confidence 00 00 125789999987543322 211111222 222222210 001
Q ss_pred HH--------HHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHH
Q 005746 352 FD--------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (679)
Q Consensus 352 fd--------r~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ 423 (679)
+. ..+.++.+++.+|++|+...+.+.. .+.....++.|||||+|.+.+ .+...
T Consensus 155 ~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f--------------~~~~~- 215 (397)
T TIGR03087 155 YRREGRLLLAYERAIAARFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFF--------------SPDRD- 215 (397)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhc--------------CCCcc-
Confidence 10 1234567899999999988776432 222223468899999986532 11100
Q ss_pred HhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHH----HHHHhCCCCchhhhhhccccccccccccccccc
Q 005746 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQ----LMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHL 499 (679)
Q Consensus 424 ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~----~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~l 499 (679)
. .-.+.++..+++++|++.+.||++.++..+. .+.++.
T Consensus 216 -~----------~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~--------------------------- 257 (397)
T TIGR03087 216 -Y----------PNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARR--------------------------- 257 (397)
T ss_pred -c----------cCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHC---------------------------
Confidence 0 0012345678999999999999999885543 333322
Q ss_pred ccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEE
Q 005746 500 RGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIG 579 (679)
Q Consensus 500 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG 579 (679)
|++++++
T Consensus 258 -----------------------------------------------------------------------p~~~l~i-- 264 (397)
T TIGR03087 258 -----------------------------------------------------------------------PAAEFYI-- 264 (397)
T ss_pred -----------------------------------------------------------------------CCcEEEE--
Confidence 3345564
Q ss_pred eeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 580 ~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
+|++.. + .++. ++..+.|.|+|..+++..+|++|||+|+||+ .+||||++++||||||+|||+|+.+.
T Consensus 265 -vG~g~~--~----~~~~----l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~ 332 (397)
T TIGR03087 265 -VGAKPS--P----AVRA----LAALPGVTVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAA 332 (397)
T ss_pred -ECCCCh--H----HHHH----hccCCCeEEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCccc
Confidence 566531 1 2222 3445789999999999999999999999997 57999999999999999999999753
No 59
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.86 E-value=4e-20 Score=185.71 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=55.1
Q ss_pred CCCCcEEECCCchh--HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 603 NLSKAMLWTPATTR--VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 603 nLs~~V~ftG~~td--VaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
++.++|.|+|+.++ +..+|++||++|+|| . |+||++++||||||+|||+++.++.++...+
T Consensus 239 ~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps--~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~ 301 (351)
T cd03804 239 KAGPNVTFLGRVSDEELRDLYARARAFLFPA--E-EDFGIVPVEAMASGTPVIAYGKGGALETVID 301 (351)
T ss_pred hcCCCEEEecCCCHHHHHHHHHhCCEEEECC--c-CCCCchHHHHHHcCCCEEEeCCCCCcceeeC
Confidence 56789999999654 999999999999999 4 9999999999999999999999998875554
No 60
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.86 E-value=7.3e-20 Score=206.79 Aligned_cols=204 Identities=17% Similarity=0.109 Sum_probs=142.9
Q ss_pred hcCcCEEEEcchhHHHHH--HHHHHhcCCCCccEEEeeehhhHHHHHHHH-------------HHhhc--CCEEEEechh
Q 005746 309 SMKADLVIAGSAVCATWI--DQYITRFPAGGSQVVWWIMENRREYFDRAK-------------LVLDR--VKLLVFLSES 371 (679)
Q Consensus 309 ~~kaDLVia~Sav~aswI--~qyia~~pag~s~VvWwI~E~rreYfdr~k-------------~vl~r--vk~LIfvSes 371 (679)
...||+||+.+...-.|. ...++..- + +++-.+|-+.-+|..+.+ ..+.+ ++.+|++|+.
T Consensus 432 ~f~PDVVHLatP~~LGw~~~Glr~ArKl-~--PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~a 508 (794)
T PLN02501 432 SKDADIAILEEPEHLNWYHHGKRWTDKF-N--HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAA 508 (794)
T ss_pred ccCCCEEEECCchhhccHHHHHHHHHHc-C--CeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCEEEcCCHH
Confidence 457999999987655565 43343221 1 366667766656665321 12333 6888998876
Q ss_pred hHHHHHHHHHHhhccCCCCcEEee--CCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEE
Q 005746 372 QTKQWLTWCEEEKLKLRSQPAVVP--LSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL 449 (679)
Q Consensus 372 q~k~w~~~~~eegi~l~sq~~VVP--~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsv 449 (679)
+.+. +. .+|+ +|||.+ .|.|.+- ..-++++|+......++++
T Consensus 509 tq~L------------~~--~vI~nVnGVDte--------------~F~P~~r--------~~~~r~lgi~~~~kgiLfV 552 (794)
T PLN02501 509 TQDL------------PK--SVICNVHGVNPK--------------FLKIGEK--------VAEERELGQQAFSKGAYFL 552 (794)
T ss_pred HHHh------------cc--cceeeccccccc--------------ccCCcch--------hHHHHhcCCccccCceEEE
Confidence 6521 11 1223 477654 3444321 1122567887655567899
Q ss_pred eccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccc
Q 005746 450 SSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLN 529 (679)
Q Consensus 450 GrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (679)
||+.+.||++.||+|++.+.++.|
T Consensus 553 GRLa~EKGld~LLeAla~L~~~~p-------------------------------------------------------- 576 (794)
T PLN02501 553 GKMVWAKGYRELIDLLAKHKNELD-------------------------------------------------------- 576 (794)
T ss_pred EcccccCCHHHHHHHHHHHHhhCC--------------------------------------------------------
Confidence 999999999999999998765332
Q ss_pred cccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEE
Q 005746 530 EPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (679)
Q Consensus 530 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ 609 (679)
+++++ ++|+|. .++.|+.+++++++ .|.
T Consensus 577 ------------------------------------------nvrLv---IVGDGP-----~reeLe~la~eLgL--~V~ 604 (794)
T PLN02501 577 ------------------------------------------GFNLD---VFGNGE-----DAHEVQRAAKRLDL--NLN 604 (794)
T ss_pred ------------------------------------------CeEEE---EEcCCc-----cHHHHHHHHHHcCC--EEE
Confidence 23445 467764 34567777777887 499
Q ss_pred ECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCc
Q 005746 610 WTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSR 661 (679)
Q Consensus 610 ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r 661 (679)
|+|..+++..+|+++||||+||. .||||+|++||||||+|||+|++++..
T Consensus 605 FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e 654 (794)
T PLN02501 605 FLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNE 654 (794)
T ss_pred ecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCc
Confidence 99999999999999999999996 999999999999999999999999854
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.85 E-value=4.8e-20 Score=201.58 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=126.4
Q ss_pred hhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcC
Q 005746 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (679)
Q Consensus 359 l~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelG 438 (679)
.+.++.+|++|+.+++.........+.. ..++.+||+|+.++.. .+..
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~-~~ki~viP~g~~~~~~--------------~~~~----------------- 315 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNI-EPRIYTIPVGSLDELQ--------------YPEQ----------------- 315 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCC-CCcEEEEcCCCccccc--------------Cccc-----------------
Confidence 5668999999999888755443333322 2467899999754321 0000
Q ss_pred CCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccc
Q 005746 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (679)
Q Consensus 439 L~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~ 518 (679)
......|+++||+.+.||++.||+|++.+.++.|+
T Consensus 316 -~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~-------------------------------------------- 350 (500)
T TIGR02918 316 -ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPE-------------------------------------------- 350 (500)
T ss_pred -ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCC--------------------------------------------
Confidence 11346899999999999999999999998765543
Q ss_pred ccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHH
Q 005746 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (679)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L 598 (679)
+++++ +|+|. .++.|+.+
T Consensus 351 ------------------------------------------------------~~l~i---~G~G~-----~~~~l~~~ 368 (500)
T TIGR02918 351 ------------------------------------------------------LTFDI---YGEGG-----EKQKLQKI 368 (500)
T ss_pred ------------------------------------------------------eEEEE---EECch-----hHHHHHHH
Confidence 34554 45542 34567778
Q ss_pred HHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC-CCccCCCCC
Q 005746 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE-LSRKDPTSG 667 (679)
Q Consensus 599 ~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g-~~r~~~~~~ 667 (679)
++.+++.+.|.|+|.. +++.+|+.||+||+||. .||||+|++||||||+|||+|+++ |.++...+|
T Consensus 369 i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g 435 (500)
T TIGR02918 369 INENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDN 435 (500)
T ss_pred HHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccCC
Confidence 8889999999999975 89999999999999996 999999999999999999999996 666654443
No 62
>PHA01633 putative glycosyl transferase group 1
Probab=99.83 E-value=1.7e-19 Score=189.58 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=122.1
Q ss_pred HHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHH
Q 005746 357 LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (679)
Q Consensus 357 ~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRke 436 (679)
.++.+-..+|++|+.+.+. +.+.|++. ..+||+|+|.+. |++.. .....+|++
T Consensus 88 ~~m~~~~~vIavS~~t~~~----L~~~G~~~---~i~I~~GVD~~~--------------f~p~~------~~~~~~r~~ 140 (335)
T PHA01633 88 KYLLQDVKFIPNSKFSAEN----LQEVGLQV---DLPVFHGINFKI--------------VENAE------KLVPQLKQK 140 (335)
T ss_pred HHHhcCCEEEeCCHHHHHH----HHHhCCCC---ceeeeCCCChhh--------------cCccc------hhhHHHHHH
Confidence 4555666899999999887 33456653 245788987553 22221 012345666
Q ss_pred cCCC-CCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcc
Q 005746 437 MGLT-DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (679)
Q Consensus 437 lGL~-d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~ 515 (679)
++.. ++.++++++||+.++||+++|++|++.+.++.|..
T Consensus 141 ~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~---------------------------------------- 180 (335)
T PHA01633 141 LDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI---------------------------------------- 180 (335)
T ss_pred hCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc----------------------------------------
Confidence 6654 46789999999999999999999999987765431
Q ss_pred cccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHH
Q 005746 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (679)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L 595 (679)
.++.++++ +|.+ .
T Consensus 181 ------------------------------------------------------~~~i~l~i---vG~~---------~- 193 (335)
T PHA01633 181 ------------------------------------------------------AKKIHFFV---ISHK---------Q- 193 (335)
T ss_pred ------------------------------------------------------cccEEEEE---EcHH---------H-
Confidence 01123343 3421 1
Q ss_pred HHHHHhCCCCCcEEECCC-----chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 596 EFLSQHSNLSKAMLWTPA-----TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 596 ~~L~~~lnLs~~V~ftG~-----~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
.++++++++|.|+|+ .++++.+|++||+||+||. .|+||++++||||||+|||+|++++..|
T Consensus 194 ---~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~E 260 (335)
T PHA01633 194 ---FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDE 260 (335)
T ss_pred ---HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCcee
Confidence 134678999999953 5789999999999999996 8999999999999999999999997666
No 63
>PHA01630 putative group 1 glycosyl transferase
Probab=99.83 E-value=1.3e-18 Score=180.82 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=130.5
Q ss_pred CcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHH-hhcCCEEEEechhhHHHHHHHHHHhhccCCC
Q 005746 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLV-LDRVKLLVFLSESQTKQWLTWCEEEKLKLRS 389 (679)
Q Consensus 311 kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~v-l~rvk~LIfvSesq~k~w~~~~~eegi~l~s 389 (679)
+++..+.++... +|. +...++..+..++.-++...+-.......+ ..+++.+|++|+...+.+ .+.++..+.
T Consensus 46 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~ad~ii~~S~~~~~~l----~~~g~~~~~ 118 (331)
T PHA01630 46 GYPIYIYYTIFN-SML--FWKGIPHVGKNIVFEVADTDAISHTALYFFRNQPVDEIVVPSQWSKNAF----YTSGLKIPQ 118 (331)
T ss_pred CCceeeehhhhh-HHH--HHhhccccCCceEEEEEeechhhHHHHHHHhhccCCEEEECCHHHHHHH----HHcCCCCCC
Confidence 334445565433 332 234444445556554554221111111233 567999999999988873 334554345
Q ss_pred CcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHH
Q 005746 390 QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMI 469 (679)
Q Consensus 390 q~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~li 469 (679)
++.|||||||.+.+. +... + .++.+++++.|++.+.||++.|++|++.+.
T Consensus 119 ~i~vIpNGVd~~~f~--------------~~~~-------------~---~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~ 168 (331)
T PHA01630 119 PIYVIPHNLNPRMFE--------------YKPK-------------E---KPHPCVLAILPHSWDRKGGDIVVKIFHELQ 168 (331)
T ss_pred CEEEECCCCCHHHcC--------------CCcc-------------c---cCCCEEEEEeccccccCCHHHHHHHHHHHH
Confidence 688999999866421 1100 0 124567777889999999999999999987
Q ss_pred HhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCC
Q 005746 470 EQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTD 549 (679)
Q Consensus 470 eq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 549 (679)
++.++
T Consensus 169 ~~~~~--------------------------------------------------------------------------- 173 (331)
T PHA01630 169 NEGYD--------------------------------------------------------------------------- 173 (331)
T ss_pred hhCCC---------------------------------------------------------------------------
Confidence 64332
Q ss_pred ccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEE
Q 005746 550 AVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVI 629 (679)
Q Consensus 550 ~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~Vl 629 (679)
+.++++| ++.. .. + + .++.. +......++++.+|++|||||+
T Consensus 174 -----------------------~~llivG---~~~~-----~~--~-l---~~~~~-~~~~v~~~~l~~~y~~aDv~v~ 215 (331)
T PHA01630 174 -----------------------FYFLIKS---SNML-----DP--R-L---FGLNG-VKTPLPDDDIYSLFAGCDILFY 215 (331)
T ss_pred -----------------------EEEEEEe---Cccc-----ch--h-h---ccccc-eeccCCHHHHHHHHHhCCEEEE
Confidence 3456544 3311 11 1 1 13322 2222335899999999999999
Q ss_pred cCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 630 NSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 630 pSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
||+ .|+||++++||||||+|||+|++|+.++...+
T Consensus 216 pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~ 250 (331)
T PHA01630 216 PVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLS 250 (331)
T ss_pred CCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccC
Confidence 997 89999999999999999999999998875444
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.82 E-value=7.5e-19 Score=177.46 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=123.0
Q ss_pred HhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHc
Q 005746 358 VLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEM 437 (679)
Q Consensus 358 vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkel 437 (679)
.+.+++.+|++|+.+.+.+.... + ...++.+||++++.+... +..
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~~---~--~~~~v~~ip~g~~~~~~~--------------~~~---------------- 198 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQF---G--NYNPIYTIPVGSIDPLKL--------------PAQ---------------- 198 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHHh---C--CCCceEEEcccccChhhc--------------ccc----------------
Confidence 35778999999998887754321 2 122378999998754321 000
Q ss_pred CCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccc
Q 005746 438 GLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNE 517 (679)
Q Consensus 438 GL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~ 517 (679)
........++++|++.+.||++.+++|+..+.++.|+
T Consensus 199 ~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~------------------------------------------- 235 (372)
T cd04949 199 FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPD------------------------------------------- 235 (372)
T ss_pred hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCC-------------------------------------------
Confidence 0123456789999999999999999999998775543
Q ss_pred cccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHH
Q 005746 518 LSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEF 597 (679)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~ 597 (679)
++++++| .+. ....++.
T Consensus 236 -------------------------------------------------------~~l~i~G---~g~-----~~~~~~~ 252 (372)
T cd04949 236 -------------------------------------------------------ATLDIYG---YGD-----EEEKLKE 252 (372)
T ss_pred -------------------------------------------------------cEEEEEE---eCc-----hHHHHHH
Confidence 3345443 332 2334555
Q ss_pred HHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC-CCccCC
Q 005746 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE-LSRKDP 664 (679)
Q Consensus 598 L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g-~~r~~~ 664 (679)
+.+..++.+.|.|+|..+++..+|+.||++|+||+ .|+||++++||||||+|||+++++ +..+-.
T Consensus 253 ~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v 318 (372)
T cd04949 253 LIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEII 318 (372)
T ss_pred HHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHc
Confidence 66778999999999999999999999999999997 899999999999999999999987 555433
No 65
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.80 E-value=5e-19 Score=187.34 Aligned_cols=269 Identities=18% Similarity=0.193 Sum_probs=179.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCC-----cch-------------hhhcCcC
Q 005746 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE-----PSF-------------KTSMKAD 313 (679)
Q Consensus 252 LsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~-----~sf-------------k~~~kaD 313 (679)
.++||.+.++..|++.|.+.||.|.+++.+.+....-...-.|++|+..+.. -.| ....+..
T Consensus 12 P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pllr~i~lrE~I~ 91 (426)
T KOG1111|consen 12 PSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLLRPILLRERIE 91 (426)
T ss_pred cCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCcccchhhhhhceE
Confidence 4689999999999999999999999888775443322333456777754321 111 1235788
Q ss_pred EEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHH--------HHhhcCCEEEEechhhHHHHHHHHHHhhc
Q 005746 314 LVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAK--------LVLDRVKLLVFLSESQTKQWLTWCEEEKL 385 (679)
Q Consensus 314 LVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k--------~vl~rvk~LIfvSesq~k~w~~~~~eegi 385 (679)
+||.|++..+.-.+.++.. ...+-++++-=|+.-. +-+... .-+..++++|++|+..++.- ..+ -.+
T Consensus 92 ivhghs~fS~lahe~l~ha-rtMGlktVfTdHSlfG-fad~~si~~n~ll~~sL~~id~~IcVshtskent--vlr-~~L 166 (426)
T KOG1111|consen 92 IVHGHSPFSYLAHEALMHA-RTMGLKTVFTDHSLFG-FADIGSILTNKLLPLSLANIDRIICVSHTSKENT--VLR-GAL 166 (426)
T ss_pred EEecCChHHHHHHHHHHHH-HhcCceEEEecccccc-ccchhhhhhcceeeeeecCCCcEEEEeecCCCce--EEE-ecc
Confidence 9999987654333333322 2233455555554211 001111 11445789999998754320 000 111
Q ss_pred cCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCC-EEEEEEeccCCCCCHHHHHHH
Q 005746 386 KLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD-MLVLSLSSINPGKGQLLLVES 464 (679)
Q Consensus 386 ~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d-~LVlsvGrInp~KGq~lLLeA 464 (679)
.+.++.+|||.++.+ .|.|...+ -+..+ ..++.+||+-++||.|+|++.
T Consensus 167 -~p~kvsvIPnAv~~~--------------~f~P~~~~---------------~~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426)
T KOG1111|consen 167 -APAKVSVIPNAVVTH--------------TFTPDAAD---------------KPSADIITIVVASRLVYRKGIDLLLEI 216 (426)
T ss_pred -CHhHeeeccceeecc--------------ccccCccc---------------cCCCCeeEEEEEeeeeeccchHHHHHH
Confidence 134677888877544 45553210 13344 788899999999999999999
Q ss_pred HHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccc
Q 005746 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (679)
Q Consensus 465 ~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (679)
+..+..+.|+
T Consensus 217 Ip~vc~~~p~---------------------------------------------------------------------- 226 (426)
T KOG1111|consen 217 IPSVCDKHPE---------------------------------------------------------------------- 226 (426)
T ss_pred HHHHHhcCCC----------------------------------------------------------------------
Confidence 9998876554
Q ss_pred cCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHH
Q 005746 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYS 622 (679)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslys 622 (679)
+.++ ++|+|+ |..-+++ ..+.+.|.++|.++|. .++|.+.|.
T Consensus 227 ----------------------------vrfi---i~GDGP-k~i~lee----~lEk~~l~~rV~~lG~v~h~~Vr~vl~ 270 (426)
T KOG1111|consen 227 ----------------------------VRFI---IIGDGP-KRIDLEE----MLEKLFLQDRVVMLGTVPHDRVRDVLV 270 (426)
T ss_pred ----------------------------eeEE---EecCCc-ccchHHH----HHHHhhccCceEEecccchHHHHHHHh
Confidence 3345 345553 2222344 4445789999999999 589999999
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccC
Q 005746 623 AADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKD 663 (679)
Q Consensus 623 AADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~ 663 (679)
.-|||+.+| +.|+||++++|||.||+|||+|++||..+-
T Consensus 271 ~G~IFlntS--lTEafc~~ivEAaScGL~VVsTrVGGIpeV 309 (426)
T KOG1111|consen 271 RGDIFLNTS--LTEAFCMVIVEAASCGLPVVSTRVGGIPEV 309 (426)
T ss_pred cCcEEeccH--HHHHHHHHHHHHHhCCCEEEEeecCCcccc
Confidence 999999999 699999999999999999999999998873
No 66
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.80 E-value=6.3e-18 Score=177.85 Aligned_cols=171 Identities=20% Similarity=0.249 Sum_probs=128.4
Q ss_pred HHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHH
Q 005746 356 KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRK 435 (679)
Q Consensus 356 k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRk 435 (679)
+.++.+++.+|++|+...+...+ ..+.. ..++.++|+|++.+.. .+.
T Consensus 178 ~~~~~~~d~ii~~S~~~~~~l~~---~~~~~-~~ki~vi~~gv~~~~~--------------~~~--------------- 224 (407)
T cd04946 178 RYLLSSLDAVFPCSEQGRNYLQK---RYPAY-KEKIKVSYLGVSDPGI--------------ISK--------------- 224 (407)
T ss_pred HHHHhcCCEEEECCHHHHHHHHH---HCCCc-cccEEEEECCcccccc--------------cCC---------------
Confidence 45578899999999998876432 12222 3467899999875421 000
Q ss_pred HcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcc
Q 005746 436 EMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (679)
Q Consensus 436 elGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~ 515 (679)
...++.+.++++|++.+.||++.|++|+..+.++.|+.
T Consensus 225 --~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~---------------------------------------- 262 (407)
T cd04946 225 --PSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSI---------------------------------------- 262 (407)
T ss_pred --CCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCc----------------------------------------
Confidence 11346788999999999999999999999998765431
Q ss_pred cccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHH
Q 005746 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (679)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L 595 (679)
+..++ .+|.+. ..+.+
T Consensus 263 --------------------------------------------------------~l~~~---iiG~g~-----~~~~l 278 (407)
T cd04946 263 --------------------------------------------------------KIKWT---HIGGGP-----LEDTL 278 (407)
T ss_pred --------------------------------------------------------eEEEE---EEeCch-----HHHHH
Confidence 11233 345542 34456
Q ss_pred HHHHHhCCCCCcEEECCCc--hhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 596 EFLSQHSNLSKAMLWTPAT--TRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 596 ~~L~~~lnLs~~V~ftG~~--tdVaslysA--ADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+.+++..++.++|.|+|+. +++..+|+. ||+||+||. .||||++++||||||+|||+|++|+..+...+|
T Consensus 279 ~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~ 352 (407)
T cd04946 279 KELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNG 352 (407)
T ss_pred HHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCC
Confidence 6677677888999999996 488899975 789999996 999999999999999999999999999866665
No 67
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.77 E-value=6.2e-17 Score=162.28 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=158.1
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcC--C---Ccc----------------
Q 005746 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR--G---EPS---------------- 305 (679)
Q Consensus 247 lI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r--~---~~s---------------- 305 (679)
++++..+.||+...+.+||++|.+.||+|++++... +...+.+...++++...+ . ...
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKR-GLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCC-cchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHH
Confidence 345667778999999999999999999999886543 322222333456554321 1 100
Q ss_pred ---hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHH
Q 005746 306 ---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (679)
Q Consensus 306 ---fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~e 382 (679)
+....++|+||+++...+ +...+.+. ..+.+ ++.+.+....... .+.+...++.++++|+...+.
T Consensus 81 ~~~~i~~~~pDvI~~~~~~~~-~~~~~~a~-~~~~p-~v~~~~~~~~~~~--~~~~~~~~~~vi~~s~~~~~~------- 148 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYVS-GPVGLAAK-LLGIP-LVIHEQNAVPGLA--NRLLARFADRVALSFPETAKY------- 148 (350)
T ss_pred HHHHHHhcCCCEEEECCCCcc-hHHHHHHH-HhCCC-EEEEcCCCCccHH--HHHHHHhhCEEEEcchhhhhc-------
Confidence 012357999998863221 21111111 12222 2222211111111 122344578899988765442
Q ss_pred hhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHH-HH
Q 005746 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQL-LL 461 (679)
Q Consensus 383 egi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~-lL 461 (679)
+. ..+..++|++++.+.+. + ... +++++++++..+|+++|+..+.|+.. ++
T Consensus 149 --~~-~~~~~~i~n~v~~~~~~--------------~----------~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l 200 (350)
T cd03785 149 --FP-KDKAVVTGNPVREEILA--------------L----------DRE-RARLGLRPGKPTLLVFGGSQGARAINEAV 200 (350)
T ss_pred --CC-CCcEEEECCCCchHHhh--------------h----------hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHH
Confidence 11 34678999999765321 0 011 67889999898888888877777765 55
Q ss_pred HHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCc
Q 005746 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (679)
Q Consensus 462 LeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 541 (679)
++|++.+.+ ++
T Consensus 201 ~~a~~~l~~--~~------------------------------------------------------------------- 211 (350)
T cd03785 201 PEALAELLR--KR------------------------------------------------------------------- 211 (350)
T ss_pred HHHHHHhhc--cC-------------------------------------------------------------------
Confidence 577766531 11
Q ss_pred ccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHH
Q 005746 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (679)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVasly 621 (679)
...++ .+|.+ . . +.++.+.+++ +++|.|+|+.++++.+|
T Consensus 212 -------------------------------~~~~~--i~G~g--~---~-~~l~~~~~~~--~~~v~~~g~~~~~~~~l 250 (350)
T cd03785 212 -------------------------------LQVIH--QTGKG--D---L-EEVKKAYEEL--GVNYEVFPFIDDMAAAY 250 (350)
T ss_pred -------------------------------eEEEE--EcCCc--c---H-HHHHHHHhcc--CCCeEEeehhhhHHHHH
Confidence 11222 35664 1 2 3344444443 57899999999999999
Q ss_pred HHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 622 sAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
++||++|.+| + |.+++|||++|+|||++..++
T Consensus 251 ~~ad~~v~~s---g---~~t~~Eam~~G~Pvv~~~~~~ 282 (350)
T cd03785 251 AAADLVISRA---G---ASTVAELAALGLPAILIPLPY 282 (350)
T ss_pred HhcCEEEECC---C---HhHHHHHHHhCCCEEEeecCC
Confidence 9999999877 2 689999999999999987654
No 68
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=8.1e-17 Score=146.36 Aligned_cols=64 Identities=30% Similarity=0.340 Sum_probs=56.4
Q ss_pred HHhCCCCCcEEECCC---chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCC
Q 005746 599 SQHSNLSKAMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDP 664 (679)
Q Consensus 599 ~~~lnLs~~V~ftG~---~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~ 664 (679)
....++.++|.++|. .+.+..++++||++++||. .|+||..++||||||+|||+|+.++.++..
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i 220 (229)
T cd01635 154 LAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVGGPPEIV 220 (229)
T ss_pred HHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCCCcceEE
Confidence 445788899999998 5677777777999999996 899999999999999999999999998743
No 69
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.76 E-value=9.2e-17 Score=163.32 Aligned_cols=254 Identities=17% Similarity=0.168 Sum_probs=159.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhH-HhcCCeEEEEcC--C---Cc---------ch-
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-LARRKIKVLEDR--G---EP---------SF- 306 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~E-L~rrgIkVl~~r--~---~~---------sf- 306 (679)
+||+++..+ .||++..+++||.+|.+.||+|++++... +...+ +...|+++.... + .. .+
T Consensus 2 ~~i~i~~~g--~gG~~~~~~~la~~L~~~g~ev~vv~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (357)
T PRK00726 2 KKILLAGGG--TGGHVFPALALAEELKKRGWEVLYLGTAR--GMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLL 77 (357)
T ss_pred cEEEEEcCc--chHhhhHHHHHHHHHHhCCCEEEEEECCC--chhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHH
Confidence 677777554 47999999999999999999999876432 22222 233576665432 1 10 11
Q ss_pred ---------hhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEechhhHHHHH
Q 005746 307 ---------KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWL 377 (679)
Q Consensus 307 ---------k~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvSesq~k~w~ 377 (679)
....++|+||+++... .|...+.... .+ .+++++.+....... .+.+..+++.+++.++.+. +
T Consensus 78 ~~~~~~~~~ik~~~pDvv~~~~~~~-~~~~~~~~~~-~~-~p~v~~~~~~~~~~~--~r~~~~~~d~ii~~~~~~~--~- 149 (357)
T PRK00726 78 KGVLQARKILKRFKPDVVVGFGGYV-SGPGGLAARL-LG-IPLVIHEQNAVPGLA--NKLLARFAKKVATAFPGAF--P- 149 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcc-hhHHHHHHHH-cC-CCEEEEcCCCCccHH--HHHHHHHhchheECchhhh--h-
Confidence 1235799999997332 2332222222 12 234443322111111 1234556788887776321 1
Q ss_pred HHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCC
Q 005746 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (679)
Q Consensus 378 ~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KG 457 (679)
+ + ...+..|+||+++++.+. +. ..+++++++++..+|+.+|+..+.|+
T Consensus 150 -----~-~-~~~~i~vi~n~v~~~~~~--------------~~-----------~~~~~~~~~~~~~~i~~~gg~~~~~~ 197 (357)
T PRK00726 150 -----E-F-FKPKAVVTGNPVREEILA--------------LA-----------APPARLAGREGKPTLLVVGGSQGARV 197 (357)
T ss_pred -----c-c-CCCCEEEECCCCChHhhc--------------cc-----------chhhhccCCCCCeEEEEECCcHhHHH
Confidence 1 2 235789999999876321 00 01235677778888899998888888
Q ss_pred HHHHH-HHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccccccc
Q 005746 458 QLLLV-ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (679)
Q Consensus 458 q~lLL-eA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (679)
+..++ +|++.+... +
T Consensus 198 ~~~~l~~a~~~~~~~-~--------------------------------------------------------------- 213 (357)
T PRK00726 198 LNEAVPEALALLPEA-L--------------------------------------------------------------- 213 (357)
T ss_pred HHHHHHHHHHHhhhC-c---------------------------------------------------------------
Confidence 75554 887765210 0
Q ss_pred CCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchh
Q 005746 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (679)
Q Consensus 537 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~td 616 (679)
..++ ++|.+. .++.++.+ + +++. |.|+|++++
T Consensus 214 ------------------------------------~~~~---~~G~g~-----~~~~~~~~-~-~~~~--v~~~g~~~~ 245 (357)
T PRK00726 214 ------------------------------------QVIH---QTGKGD-----LEEVRAAY-A-AGIN--AEVVPFIDD 245 (357)
T ss_pred ------------------------------------EEEE---EcCCCc-----HHHHHHHh-h-cCCc--EEEeehHhh
Confidence 0112 467652 34444444 5 7775 999999999
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 617 VaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
++++|++||++|++| + +.+++||||||+|||++..+
T Consensus 246 ~~~~~~~~d~~i~~~---g---~~~~~Ea~~~g~Pvv~~~~~ 281 (357)
T PRK00726 246 MAAAYAAADLVICRA---G---ASTVAELAAAGLPAILVPLP 281 (357)
T ss_pred HHHHHHhCCEEEECC---C---HHHHHHHHHhCCCEEEecCC
Confidence 999999999999987 2 68999999999999999765
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.74 E-value=7.3e-16 Score=161.54 Aligned_cols=273 Identities=17% Similarity=0.187 Sum_probs=162.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE--EEeCCCCC-ChhHHhcCCeEEEEcCCCcc-----hhhhcCcCEEEE
Q 005746 246 ILIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGG-LMPELARRKIKVLEDRGEPS-----FKTSMKADLVIA 317 (679)
Q Consensus 246 LlI~heLsmgGAplsmmeLAteL~s~G~~Vsa--VvLs~~Gg-L~~EL~rrgIkVl~~r~~~s-----fk~~~kaDLVia 317 (679)
++=+|-.|.| =..++..|+++|.+++.++.+ .+.+..|. +..+....++.+...+.+.. |-...+||+||.
T Consensus 52 ~iW~Ha~s~G-e~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~ 130 (425)
T PRK05749 52 LIWFHAVSVG-ETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVII 130 (425)
T ss_pred eEEEEeCCHH-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEE
Confidence 3679999877 557899999999998755433 33333332 22222233455555444432 334578999987
Q ss_pred cchhHHHHHHHHHHhcCCCCccEEEeeehh-h--HH---HHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCCCc
Q 005746 318 GSAVCATWIDQYITRFPAGGSQVVWWIMEN-R--RE---YFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP 391 (679)
Q Consensus 318 ~Sav~aswI~qyia~~pag~s~VvWwI~E~-r--re---Yfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~ 391 (679)
+.. -.|...+......+.+.+++..+-. + .. +....+.++.+++.++++|+...+.+ .+.|+. ++ +
T Consensus 131 ~~~--~~~~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l----~~~g~~-~~-i 202 (425)
T PRK05749 131 MET--ELWPNLIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERF----LALGAK-NE-V 202 (425)
T ss_pred Eec--chhHHHHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHH----HHcCCC-CC-c
Confidence 632 1243322211122333343322111 0 11 11223456788999999999988774 334543 23 5
Q ss_pred EEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHh
Q 005746 392 AVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ 471 (679)
Q Consensus 392 ~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq 471 (679)
.|+|+.. .+. ..+.... ..+..+|++++ ++..+++++|+ ..|+.++|++|++.+.++
T Consensus 203 ~vi~n~~-~d~------------~~~~~~~------~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~~ 259 (425)
T PRK05749 203 TVTGNLK-FDI------------EVPPELA------ARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLKQ 259 (425)
T ss_pred Eeccccc-ccC------------CCChhhH------HHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHHh
Confidence 6776631 110 0011110 11345677887 45566777765 368899999999988654
Q ss_pred CCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCcc
Q 005746 472 EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAV 551 (679)
Q Consensus 472 ~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 551 (679)
.|+
T Consensus 260 ~~~----------------------------------------------------------------------------- 262 (425)
T PRK05749 260 FPN----------------------------------------------------------------------------- 262 (425)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 332
Q ss_pred ccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCC-------------cEEECCCchhHH
Q 005746 552 SFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK-------------AMLWTPATTRVA 618 (679)
Q Consensus 552 ~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~-------------~V~ftG~~tdVa 618 (679)
++++ ++|.+.. ..+.++.+++++|++. .|.+.+...+++
T Consensus 263 ---------------------~~li---ivG~g~~----r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~ 314 (425)
T PRK05749 263 ---------------------LLLI---LVPRHPE----RFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELG 314 (425)
T ss_pred ---------------------cEEE---EcCCChh----hHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHH
Confidence 3445 3566521 1244666677788852 344445567999
Q ss_pred HHHHHcCEEEE-cCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 619 SLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 619 slysAADV~Vl-pSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
.+|++|||+++ +| +.|+||.+++||||||+|||+++.
T Consensus 315 ~~y~~aDi~~v~~S--~~e~~g~~~lEAma~G~PVI~g~~ 352 (425)
T PRK05749 315 LLYAIADIAFVGGS--LVKRGGHNPLEPAAFGVPVISGPH 352 (425)
T ss_pred HHHHhCCEEEECCC--cCCCCCCCHHHHHHhCCCEEECCC
Confidence 99999999666 56 479999999999999999999764
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.74 E-value=1.3e-16 Score=172.23 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=150.0
Q ss_pred CcCEEEEcchhHHHHHHHHHH-hcCCCCccEEEeeehh--hHHHHHH---HHHH---hhcCCEEEEechhhHHHHHHHHH
Q 005746 311 KADLVIAGSAVCATWIDQYIT-RFPAGGSQVVWWIMEN--RREYFDR---AKLV---LDRVKLLVFLSESQTKQWLTWCE 381 (679)
Q Consensus 311 kaDLVia~Sav~aswI~qyia-~~pag~s~VvWwI~E~--rreYfdr---~k~v---l~rvk~LIfvSesq~k~w~~~~~ 381 (679)
..|+|+.|..-.. .+.+++. ..+ ..+++|+.|-- -.++|.. .+.+ +-.++.+.|-+..-.+.+...|.
T Consensus 131 ~~d~iwihDyhl~-llp~~lr~~~~--~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~ 207 (460)
T cd03788 131 PGDLVWVHDYHLL-LLPQMLRERGP--DARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCS 207 (460)
T ss_pred CCCEEEEeChhhh-HHHHHHHhhCC--CCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHH
Confidence 4689988764211 1223333 222 23577777621 1223321 1112 33478899987666666666665
Q ss_pred Hh-hcc--------C---CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEE
Q 005746 382 EE-KLK--------L---RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL 449 (679)
Q Consensus 382 ee-gi~--------l---~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsv 449 (679)
.. +.. . ..++.++|+|||.+.+.... .+ ...++.+++..++.++..+|+++
T Consensus 208 ~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~---------~~--------~~~~~~~~~~~~~~~~~~~il~v 270 (460)
T cd03788 208 RLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLA---------AS--------PEVQERAAELRERLGGRKLIVGV 270 (460)
T ss_pred HHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHh---------cC--------chhHHHHHHHHHhcCCCEEEEEe
Confidence 32 111 0 11468899999876543211 00 11223344455666788999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccc
Q 005746 450 SSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLN 529 (679)
Q Consensus 450 GrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (679)
||+.+.||++.+|+|++.++++.|+.
T Consensus 271 gRl~~~Kgi~~ll~A~~~ll~~~p~~------------------------------------------------------ 296 (460)
T cd03788 271 DRLDYSKGIPERLLAFERLLERYPEW------------------------------------------------------ 296 (460)
T ss_pred cCccccCCHHHHHHHHHHHHHhChhh------------------------------------------------------
Confidence 99999999999999999998876541
Q ss_pred cccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCC-hHHHHHHHHHHHHhCCC----
Q 005746 530 EPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK-VPYVKEILEFLSQHSNL---- 604 (679)
Q Consensus 530 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk-~~y~k~~L~~L~~~lnL---- 604 (679)
+.++.+++||....+..+ ...+++.++.++.+.|.
T Consensus 297 ----------------------------------------~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~ 336 (460)
T cd03788 297 ----------------------------------------RGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGT 336 (460)
T ss_pred ----------------------------------------cCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence 012345555432111111 12244555555554432
Q ss_pred ---CCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCC----EEEeCCCCCccCCCCCCc
Q 005746 605 ---SKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----KNISQIELSRKDPTSGTW 669 (679)
Q Consensus 605 ---s~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlP----VV~S~~g~~r~~~~~~~~ 669 (679)
..-+.+.|. .++++.+|++|||||+||. .||||+|++||||||+| ||+|+.+|..+...+|..
T Consensus 337 ~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~~~~g~l 408 (460)
T cd03788 337 LDWTPVRYLYRSLPREELAALYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEELSGALL 408 (460)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhhcCCCEE
Confidence 233345564 6899999999999999996 99999999999999999 999998888776555543
No 72
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.72 E-value=9.1e-16 Score=153.82 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=155.1
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH-hcCCeEEEEcCCCc--------------c--
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP--------------S-- 305 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL-~rrgIkVl~~r~~~--------------s-- 305 (679)
|||+++.-+. +|......+||++|.+.||+|++++- .++...++ ...|+++....... +
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~--~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGT--KRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeC--CCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHH
Confidence 4788776554 45555667999999999999998752 23333333 33577765432110 0
Q ss_pred --------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHH-HHHhhcCCEEEEechhhHHHH
Q 005746 306 --------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRA-KLVLDRVKLLVFLSESQTKQW 376 (679)
Q Consensus 306 --------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~-k~vl~rvk~LIfvSesq~k~w 376 (679)
+....++|+||+++...+ +....++.. .+.+ ++. ++.. .+.... +.+...++.+|++|+...+..
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~~-~~~~~~~~~-~~~p-~v~--~~~~-~~~~~~~~~~~~~~d~ii~~~~~~~~~~ 150 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYVS-GPAGLAAKL-LGIP-LFH--HEQN-AVPGLTNKLLSRFAKKVLISFPGAKDHF 150 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccc-HHHHHHHHH-cCCC-EEE--ECCC-CCccHHHHHHHHHhCeeEECchhHhhcC
Confidence 012357999999864332 221112211 1222 221 1110 011111 334556899999888654431
Q ss_pred HHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCC
Q 005746 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (679)
Q Consensus 377 ~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~K 456 (679)
...+||++++++..... ..++++|++++.++|+++|+..+.|
T Consensus 151 -------------~~~~i~n~v~~~~~~~~-------------------------~~~~~~~~~~~~~~i~~~gg~~~~~ 192 (348)
T TIGR01133 151 -------------EAVLVGNPVRQEIRSLP-------------------------VPRERFGLREGKPTILVLGGSQGAK 192 (348)
T ss_pred -------------CceEEcCCcCHHHhccc-------------------------chhhhcCCCCCCeEEEEECCchhHH
Confidence 23789999976532100 0123578998899999999887888
Q ss_pred CHHH-HHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccc
Q 005746 457 GQLL-LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (679)
Q Consensus 457 Gq~l-LLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (679)
++.. +++|++.+... .
T Consensus 193 ~~~~~l~~a~~~l~~~--~------------------------------------------------------------- 209 (348)
T TIGR01133 193 ILNELVPKALAKLAEK--G------------------------------------------------------------- 209 (348)
T ss_pred HHHHHHHHHHHHHhhc--C-------------------------------------------------------------
Confidence 8654 55777665321 0
Q ss_pred cCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCch
Q 005746 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT 615 (679)
Q Consensus 536 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~t 615 (679)
.+.++ .+|.+ .++.++...+++++.+.|.|+ ..
T Consensus 210 -------------------------------------~~~~~--~~g~~------~~~~l~~~~~~~~l~~~v~~~-~~- 242 (348)
T TIGR01133 210 -------------------------------------IQIVH--QTGKN------DLEKVKNVYQELGIEAIVTFI-DE- 242 (348)
T ss_pred -------------------------------------cEEEE--ECCcc------hHHHHHHHHhhCCceEEecCc-cc-
Confidence 11222 34543 124566666778887777887 33
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 616 dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
+++.+|++||++|.+| + |++++||||+|+|||++++++
T Consensus 243 ~~~~~l~~ad~~v~~~---g---~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 243 NMAAAYAAADLVISRA---G---ASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred CHHHHHHhCCEEEECC---C---hhHHHHHHHcCCCEEEeeCCC
Confidence 9999999999999877 2 789999999999999998754
No 73
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.72 E-value=5.5e-17 Score=147.54 Aligned_cols=131 Identities=27% Similarity=0.463 Sum_probs=106.2
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHh-CCCCchhhhhhcccccccccccccccccccccccccc
Q 005746 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (679)
Q Consensus 430 R~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq-~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~ 508 (679)
|+..|...+..++..+|+++|++.+.||++.|++|+..+.++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~----------------------------------- 46 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNP----------------------------------- 46 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCC-----------------------------------
Confidence 466788999999999999999999999999999999998753 22
Q ss_pred cccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCCh
Q 005746 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (679)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~ 588 (679)
+..+++ +|.+.
T Consensus 47 ---------------------------------------------------------------~~~l~i---~G~~~--- 57 (172)
T PF00534_consen 47 ---------------------------------------------------------------NYKLVI---VGDGE--- 57 (172)
T ss_dssp ---------------------------------------------------------------TEEEEE---ESHCC---
T ss_pred ---------------------------------------------------------------CeEEEE---Ecccc---
Confidence 233454 45321
Q ss_pred HHHHHHHHHHHHhCCCCCcEEECCCch--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCC
Q 005746 589 PYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTS 666 (679)
Q Consensus 589 ~y~k~~L~~L~~~lnLs~~V~ftG~~t--dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~ 666 (679)
....+..+++..++.+.|.|.|... ++..+|+.||++|+||. .|+||.+++|||+||+|||+|++++..+...+
T Consensus 58 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~ 133 (172)
T PF00534_consen 58 --YKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIIND 133 (172)
T ss_dssp --HHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT
T ss_pred --cccccccccccccccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeecc
Confidence 3445667778899999999999976 99999999999999997 79999999999999999999999998876665
Q ss_pred CC
Q 005746 667 GT 668 (679)
Q Consensus 667 ~~ 668 (679)
+.
T Consensus 134 ~~ 135 (172)
T PF00534_consen 134 GV 135 (172)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 74
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=6.4e-15 Score=151.74 Aligned_cols=267 Identities=13% Similarity=0.099 Sum_probs=157.2
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC--CChhHHhcC---------------CeEEEEc-CCC
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELARR---------------KIKVLED-RGE 303 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G--gL~~EL~rr---------------gIkVl~~-r~~ 303 (679)
.+|||+++.+. -+|.......|+.+|.+.|++|++++-.... +.+..+.+. -...... ...
T Consensus 4 ~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (380)
T PRK13609 4 NPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYDK 82 (380)
T ss_pred CCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccch
Confidence 36788887665 2477788999999999999986655422211 111111110 0000000 000
Q ss_pred cc--------------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEEec
Q 005746 304 PS--------------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLS 369 (679)
Q Consensus 304 ~s--------------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIfvS 369 (679)
.. +....+||+||++....+ +..+.+..... -+++.+++.... ....+..+++.++++|
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~--~~~~~~~~~~~-ip~~~~~td~~~----~~~~~~~~ad~i~~~s 155 (380)
T PRK13609 83 KIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA--VPELKKQTGIS-IPTYNVLTDFCL----HKIWVHREVDRYFVAT 155 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH--HHHHHHhcCCC-CCeEEEeCCCCC----CcccccCCCCEEEECC
Confidence 00 012358999998765432 22222222222 234444432211 1123456789999999
Q ss_pred hhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCC-EEEEE
Q 005746 370 ESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD-MLVLS 448 (679)
Q Consensus 370 esq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d-~LVls 448 (679)
+...+. ..+.|++. +++.++++.+.+.. .+. . .+..+|+++|++++. +++++
T Consensus 156 ~~~~~~----l~~~gi~~-~ki~v~G~p~~~~f---------------~~~-~------~~~~~~~~~~l~~~~~~il~~ 208 (380)
T PRK13609 156 DHVKKV----LVDIGVPP-EQVVETGIPIRSSF---------------ELK-I------NPDIIYNKYQLCPNKKILLIM 208 (380)
T ss_pred HHHHHH----HHHcCCCh-hHEEEECcccChHH---------------cCc-C------CHHHHHHHcCCCCCCcEEEEE
Confidence 988766 33456542 34556554443321 000 0 023468899998765 45556
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccc
Q 005746 449 LSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQL 528 (679)
Q Consensus 449 vGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (679)
.|++...|++..+++++.. .+
T Consensus 209 ~G~~~~~k~~~~li~~l~~----~~------------------------------------------------------- 229 (380)
T PRK13609 209 AGAHGVLGNVKELCQSLMS----VP------------------------------------------------------- 229 (380)
T ss_pred cCCCCCCcCHHHHHHHHhh----CC-------------------------------------------------------
Confidence 6889888999888887642 11
Q ss_pred ccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcE
Q 005746 529 NEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAM 608 (679)
Q Consensus 529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V 608 (679)
+.+++++| |.+ +..++.++.+.++++ ++|
T Consensus 230 -------------------------------------------~~~~viv~--G~~----~~~~~~l~~~~~~~~--~~v 258 (380)
T PRK13609 230 -------------------------------------------DLQVVVVC--GKN----EALKQSLEDLQETNP--DAL 258 (380)
T ss_pred -------------------------------------------CcEEEEEe--CCC----HHHHHHHHHHHhcCC--CcE
Confidence 12334432 432 124566776666544 789
Q ss_pred EECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC-CCC
Q 005746 609 LWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ-IEL 659 (679)
Q Consensus 609 ~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~-~g~ 659 (679)
+|+|+.++++.+|++||++|..+ .|++++||||||+|||+++ +++
T Consensus 259 ~~~g~~~~~~~l~~~aD~~v~~~------gg~t~~EA~a~g~PvI~~~~~~g 304 (380)
T PRK13609 259 KVFGYVENIDELFRVTSCMITKP------GGITLSEAAALGVPVILYKPVPG 304 (380)
T ss_pred EEEechhhHHHHHHhccEEEeCC------CchHHHHHHHhCCCEEECCCCCC
Confidence 99999999999999999998533 5899999999999999986 444
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.64 E-value=2e-14 Score=160.65 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=64.3
Q ss_pred HhhcCCEEEEechhhHHHHHHHHHH-hhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHH----HHHH
Q 005746 358 VLDRVKLLVFLSESQTKQWLTWCEE-EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL----LRDS 432 (679)
Q Consensus 358 vl~rvk~LIfvSesq~k~w~~~~~e-egi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~----lR~s 432 (679)
....++.++++|+.++.. |+. .+.+. + .|||||+|.+.+. +. +.|. ..-...|.. .+..
T Consensus 223 aa~~Ad~fttVS~it~~E----~~~Ll~~~p-d--~ViPNGid~~~f~-~~-------~e~~-~~~~~~k~ki~~f~~~~ 286 (590)
T cd03793 223 AAHCAHVFTTVSEITAYE----AEHLLKRKP-D--VVLPNGLNVKKFS-AL-------HEFQ-NLHAQSKEKINEFVRGH 286 (590)
T ss_pred HHhhCCEEEECChHHHHH----HHHHhCCCC-C--EEeCCCcchhhcc-cc-------hhhh-hhhHHhhhhhhHHHHHH
Confidence 445689999999999876 443 24332 2 3999999987532 11 0111 000011111 2344
Q ss_pred HHHHcCCCCCCEEEEE-EeccCC-CCCHHHHHHHHHHHHH
Q 005746 433 VRKEMGLTDQDMLVLS-LSSINP-GKGQLLLVESAQLMIE 470 (679)
Q Consensus 433 vRkelGL~d~d~LVls-vGrInp-~KGq~lLLeA~~~lie 470 (679)
++..+++++++.++++ +||+.. .||.++||||++.+-.
T Consensus 287 ~~~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 287 FYGHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred HhhhcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHH
Confidence 6777899888888777 799999 9999999999998864
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.64 E-value=2.5e-15 Score=163.28 Aligned_cols=195 Identities=14% Similarity=0.193 Sum_probs=127.9
Q ss_pred cCCEEEEechhhHHHHHHHHHH-hhcc-------C---CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHH
Q 005746 361 RVKLLVFLSESQTKQWLTWCEE-EKLK-------L---RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~e-egi~-------l---~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~l 429 (679)
.+|.|.|-+..-.+.++..|.. .+.. . ..++.++|+|||.+.+.... . .++ . +..
T Consensus 183 ~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~-----~----~~~-~----~~~ 248 (456)
T TIGR02400 183 AYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQA-----K----KPS-V----QKR 248 (456)
T ss_pred cCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHh-----c----Chh-H----HHH
Confidence 5788999888888888777763 2221 1 12367889999877543211 0 111 1 111
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccccccccc
Q 005746 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSD 509 (679)
Q Consensus 430 R~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~ 509 (679)
...+|++++ +..+|+++||+++.||++.+++|++.++++.|+. +
T Consensus 249 ~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~------------------------~--------- 292 (456)
T TIGR02400 249 IAELRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEW------------------------R--------- 292 (456)
T ss_pred HHHHHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccc------------------------c---------
Confidence 235677763 6789999999999999999999999998877641 0
Q ss_pred ccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCC-Ch
Q 005746 510 DVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN-KV 588 (679)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~sn-k~ 588 (679)
.++.++++|.-+.+.. ..
T Consensus 293 -------------------------------------------------------------~~v~Lv~v~~p~rg~~~~~ 311 (456)
T TIGR02400 293 -------------------------------------------------------------GKVVLVQIAVPSRGDVPEY 311 (456)
T ss_pred -------------------------------------------------------------CceEEEEEecCCccCchHH
Confidence 1233455542211111 11
Q ss_pred HHHHHHHHHHHHhCCCC-Cc-----EEECC-C--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCC----EEEe
Q 005746 589 PYVKEILEFLSQHSNLS-KA-----MLWTP-A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----KNIS 655 (679)
Q Consensus 589 ~y~k~~L~~L~~~lnLs-~~-----V~ftG-~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlP----VV~S 655 (679)
..++..++.++.+.|-. .. |.+.+ . .++++.+|++|||+|+||. .||||+|++||||||+| ||+|
T Consensus 312 ~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS 389 (456)
T TIGR02400 312 QQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILS 389 (456)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEe
Confidence 22444455553322211 11 44443 3 6899999999999999995 99999999999999999 9999
Q ss_pred CCCCCccCCCCCC
Q 005746 656 QIELSRKDPTSGT 668 (679)
Q Consensus 656 ~~g~~r~~~~~~~ 668 (679)
+.+|..+...+|.
T Consensus 390 ~~~G~~~~l~~gl 402 (456)
T TIGR02400 390 EFAGAAQELNGAL 402 (456)
T ss_pred CCCCChHHhCCcE
Confidence 9888777655443
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.63 E-value=8.2e-15 Score=152.75 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=131.8
Q ss_pred cCcCEEEEcchh----HHHHHHHHHHhcCCCCccEEEeeehh-hHHHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhh
Q 005746 310 MKADLVIAGSAV----CATWIDQYITRFPAGGSQVVWWIMEN-RREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEK 384 (679)
Q Consensus 310 ~kaDLVia~Sav----~aswI~qyia~~pag~s~VvWwI~E~-rreYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eeg 384 (679)
.+||+||++... ++.++..+.... ....+++.++.+. ..+ ...+...++.+++.|+...+. +.+.|
T Consensus 99 ~~pDvIi~thp~~~~~~~~~l~~~~~~~-~~~~p~~~~~tD~~~~~----~~w~~~~~d~~~~~s~~~~~~----l~~~g 169 (382)
T PLN02605 99 YKPDIIVSVHPLMQHVPLRVLRWQGKEL-GKKIPFTTVVTDLGTCH----PTWFHKGVTRCFCPSEEVAKR----ALKRG 169 (382)
T ss_pred cCcCEEEEeCcCcccCHHHHHHHHhhcc-CCCCCEEEEECCCCCcC----cccccCCCCEEEECCHHHHHH----HHHcC
Confidence 589999985433 232222211111 1122334344443 111 122356789999999887766 44556
Q ss_pred ccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHH
Q 005746 385 LKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVES 464 (679)
Q Consensus 385 i~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA 464 (679)
++ ++++.+++++++.+.. . + .+ .+..+|+++|++++.++|+++|+..+.|++..++++
T Consensus 170 ~~-~~ki~v~g~~v~~~f~--~--------~--~~---------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~ 227 (382)
T PLN02605 170 LE-PSQIRVYGLPIRPSFA--R--------A--VR---------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARA 227 (382)
T ss_pred CC-HHHEEEECcccCHhhc--c--------C--CC---------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHH
Confidence 65 3467888877765421 0 0 00 134578999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccc
Q 005746 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (679)
Q Consensus 465 ~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (679)
+..+......
T Consensus 228 l~~~~~~~~~---------------------------------------------------------------------- 237 (382)
T PLN02605 228 LGDSLYDKNL---------------------------------------------------------------------- 237 (382)
T ss_pred HHHhhccccc----------------------------------------------------------------------
Confidence 8754311000
Q ss_pred cCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHc
Q 005746 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAA 624 (679)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAA 624 (679)
..++.+.++ ++|.+ + ..++.|+.+ .....|.|+|++++++.+|++|
T Consensus 238 ------------------------~~~~~~~~v--i~G~~--~--~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aa 283 (382)
T PLN02605 238 ------------------------GKPIGQVVV--ICGRN--K--KLQSKLESR----DWKIPVKVRGFVTNMEEWMGAC 283 (382)
T ss_pred ------------------------cCCCceEEE--EECCC--H--HHHHHHHhh----cccCCeEEEeccccHHHHHHhC
Confidence 001122233 35653 1 233444433 2245799999999999999999
Q ss_pred CEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 625 DVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 625 DV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
|++|.+| .|.+++||||||+|||+++.
T Consensus 284 Dv~V~~~------g~~ti~EAma~g~PvI~~~~ 310 (382)
T PLN02605 284 DCIITKA------GPGTIAEALIRGLPIILNGY 310 (382)
T ss_pred CEEEECC------CcchHHHHHHcCCCEEEecC
Confidence 9999977 37899999999999999984
No 78
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.55 E-value=5e-13 Score=138.81 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=51.5
Q ss_pred CCcEEECCCc--hhHHHHHHHcCEEEEcCCC---CCCCccHHHHHHHHcCCCEEEeCCCCCccCC
Q 005746 605 SKAMLWTPAT--TRVASLYSAADVYVINSQG---LGETFGRVTIEAMAFGVPKNISQIELSRKDP 664 (679)
Q Consensus 605 s~~V~ftG~~--tdVaslysAADV~VlpSq~---~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~ 664 (679)
.++|+|+|.. ++++.+|++|||+++|+.- ..+++|+.++||||||+|||+|+++...+..
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~~ 317 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRYE 317 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhhc
Confidence 3689999996 7999999999999999861 1357899999999999999999988776654
No 79
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.8e-12 Score=140.45 Aligned_cols=309 Identities=18% Similarity=0.148 Sum_probs=190.0
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcC-------C-----------------
Q 005746 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-------K----------------- 294 (679)
Q Consensus 243 rKILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rr-------g----------------- 294 (679)
|||+++..|.. .||-.-.+-.|..+|++.|++|.++... -+.+.++.... +
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPS-YPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGK 79 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCC-chhhhhhhccccceeeEeeeeecccceEEEEEeecc
Confidence 57787777764 5888899999999999999999876543 33333332221 0
Q ss_pred ---eEE--EE-----cCC----C------cchh-----------hh---cCcCEEEEcchhHHHHHHHHHHhcC--CCCc
Q 005746 295 ---IKV--LE-----DRG----E------PSFK-----------TS---MKADLVIAGSAVCATWIDQYITRFP--AGGS 338 (679)
Q Consensus 295 ---IkV--l~-----~r~----~------~sfk-----------~~---~kaDLVia~Sav~aswI~qyia~~p--ag~s 338 (679)
+++ +. .+. . ..|. .. ..||+||+|..-++. +..+++... ....
T Consensus 80 ~~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L-~~~~lk~~~~~~~~i 158 (487)
T COG0297 80 DGGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGL-LPAYLKQRYRSGYII 158 (487)
T ss_pred cCCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHH-HHHHHhhcccccccC
Confidence 111 11 010 0 0010 01 369999999764432 333343321 1111
Q ss_pred cEEEeeehh------hH----------HHHH-----------HHHHHhhcCCEEEEechhhHHHHHHHHHHh---hc-cC
Q 005746 339 QVVWWIMEN------RR----------EYFD-----------RAKLVLDRVKLLVFLSESQTKQWLTWCEEE---KL-KL 387 (679)
Q Consensus 339 ~VvWwI~E~------rr----------eYfd-----------r~k~vl~rvk~LIfvSesq~k~w~~~~~ee---gi-~l 387 (679)
+.+..||.. +. ++|. -.|..+..++++.++|.+-++...+-.-.+ ++ ..
T Consensus 159 ~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~ 238 (487)
T COG0297 159 PTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSW 238 (487)
T ss_pred CeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhh
Confidence 233344421 11 1111 123345567888999877665433110001 11 00
Q ss_pred -CCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCC--CCEEEEEEeccCCCCCHHHHHHH
Q 005746 388 -RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVES 464 (679)
Q Consensus 388 -~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d--~d~LVlsvGrInp~KGq~lLLeA 464 (679)
.-+..-|-||+|.++.-....+ .+. -.|+.+.+. ++...+..+++++||+. +.++++++|||..+||.+++++|
T Consensus 239 ~~~~l~GI~NgiD~~~wnp~~d~-~~~-~~y~~~~~~-~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~ 315 (487)
T COG0297 239 RSGKLSGILNGIDYDLWNPETDP-YIA-ANYSAEVLP-AKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEA 315 (487)
T ss_pred ccccEEEEEeeEEecccCccccc-chh-ccCCccchh-hhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHH
Confidence 1245678888887643222111 111 235555543 35567889999999983 56999999999999999999999
Q ss_pred HHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccc
Q 005746 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (679)
Q Consensus 465 ~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (679)
+..++++.
T Consensus 316 i~~~l~~~------------------------------------------------------------------------ 323 (487)
T COG0297 316 IDELLEQG------------------------------------------------------------------------ 323 (487)
T ss_pred HHHHHHhC------------------------------------------------------------------------
Confidence 99998743
Q ss_pred cCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHH-HHHHH
Q 005746 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVA-SLYSA 623 (679)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVa-slysA 623 (679)
++++++ |.+ .+.+.+.+..+++.... .-..-.|+....+ .+|+.
T Consensus 324 ----------------------------~~~vil---G~g---d~~le~~~~~la~~~~~-~~~~~i~~~~~la~~i~ag 368 (487)
T COG0297 324 ----------------------------WQLVLL---GTG---DPELEEALRALASRHPG-RVLVVIGYDEPLAHLIYAG 368 (487)
T ss_pred ----------------------------ceEEEE---ecC---cHHHHHHHHHHHHhcCc-eEEEEeeecHHHHHHHHhc
Confidence 234644 443 13456666677765433 3334466765544 89999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCC
Q 005746 624 ADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPT 665 (679)
Q Consensus 624 ADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~ 665 (679)
||++++||+ +|+||++-++||++|++.|+..+||.++-+.
T Consensus 369 aD~~lmPSr--fEPcGL~ql~amryGtvpIv~~tGGLadTV~ 408 (487)
T COG0297 369 ADVILMPSR--FEPCGLTQLYAMRYGTLPIVRETGGLADTVV 408 (487)
T ss_pred CCEEEeCCc--CcCCcHHHHHHHHcCCcceEcccCCccceec
Confidence 999999997 9999999999999999999999999887443
No 80
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.45 E-value=3.4e-12 Score=130.83 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=40.4
Q ss_pred HHHHHHHHhC-CCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 593 EILEFLSQHS-NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 593 ~~L~~L~~~l-nLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
+.++.+.+.. ++. |.+.. .+++.+|++||++|++| |.+++||||||+|||++
T Consensus 234 ~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 234 EQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTVTLELALLKVPMVVG 286 (380)
T ss_pred HHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHHHHHHHHhCCCEEEE
Confidence 3344455555 554 55533 58999999999999998 78999999999999987
No 81
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.42 E-value=5.8e-12 Score=127.54 Aligned_cols=170 Identities=16% Similarity=0.125 Sum_probs=114.4
Q ss_pred hhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcC
Q 005746 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (679)
Q Consensus 359 l~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelG 438 (679)
...++.+++.++...++ +..+|+. +.++.+|++++-+...+.... ......++++|
T Consensus 139 ~~~ad~~~~~s~~~~~~----l~~~G~~-~~kI~vign~v~d~~~~~~~~-------------------~~~~~~~~~~~ 194 (363)
T cd03786 139 DKLSDLHFAPTEEARRN----LLQEGEP-PERIFVVGNTMIDALLRLLEL-------------------AKKELILELLG 194 (363)
T ss_pred HHHhhhccCCCHHHHHH----HHHcCCC-cccEEEECchHHHHHHHHHHh-------------------hccchhhhhcc
Confidence 34567777778877666 3456765 346788998864443322100 00112356889
Q ss_pred CCCCCEEEEEEeccCC---CCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCcc
Q 005746 439 LTDQDMLVLSLSSINP---GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (679)
Q Consensus 439 L~d~d~LVlsvGrInp---~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~ 515 (679)
++++.+++++.|+... .||++.+++|++.+.+. +
T Consensus 195 ~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~----------------------------------------- 231 (363)
T cd03786 195 LLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--D----------------------------------------- 231 (363)
T ss_pred cCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--C-----------------------------------------
Confidence 9888888889999764 89999999999876421 1
Q ss_pred cccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHH
Q 005746 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (679)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L 595 (679)
. .+++ .|.+. .++.+
T Consensus 232 ---------------------------------------------------------~--~vi~-~~~~~-----~~~~l 246 (363)
T cd03786 232 ---------------------------------------------------------V--PVVF-PNHPR-----TRPRI 246 (363)
T ss_pred ---------------------------------------------------------C--EEEE-ECCCC-----hHHHH
Confidence 1 1222 34321 23445
Q ss_pred HHHHHhCCC-CCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC-CCCccCCCCC
Q 005746 596 EFLSQHSNL-SKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI-ELSRKDPTSG 667 (679)
Q Consensus 596 ~~L~~~lnL-s~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~-g~~r~~~~~~ 667 (679)
+...+.+++ .+.|.|+|. .++++.+|++||++|.+| + | ++.|||++|+|||++.. +..++...+|
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S---g---g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g 315 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS---G---G-IQEEASFLGVPVLNLRDRTERPETVESG 315 (363)
T ss_pred HHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC---c---c-HHhhhhhcCCCEEeeCCCCccchhhhee
Confidence 555566666 678999975 679999999999999999 3 3 58999999999999974 3344555454
No 82
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.42 E-value=1.8e-12 Score=149.72 Aligned_cols=189 Identities=17% Similarity=0.242 Sum_probs=122.0
Q ss_pred cCCEEEEechhhHHHHHHHHHH-hhcc-------CC---CCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHH
Q 005746 361 RVKLLVFLSESQTKQWLTWCEE-EKLK-------LR---SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~e-egi~-------l~---sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~l 429 (679)
.++.|-|-+..-.+.+...|.. .+.. .. .++.++|+|||.+.+.... .+++ . + ..
T Consensus 203 ~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~---------~~~~-~---~-~~ 268 (797)
T PLN03063 203 TADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTC---------ELPE-V---K-QH 268 (797)
T ss_pred cCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHh---------cChh-H---H-HH
Confidence 4688888888777777776653 2211 11 2467899999877442110 0111 1 1 11
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccccccccc
Q 005746 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSD 509 (679)
Q Consensus 430 R~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~ 509 (679)
...+|+.++ +..+|+++||+++.||++.+|+|++.++++.|+. |
T Consensus 269 ~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~------------------------~--------- 312 (797)
T PLN03063 269 MKELKRFFA---GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEW------------------------R--------- 312 (797)
T ss_pred HHHHHHhcC---CCeEEEEecccccccCHHHHHHHHHHHHHhCccc------------------------c---------
Confidence 234565554 5678999999999999999999999999877751 0
Q ss_pred ccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChH
Q 005746 510 DVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVP 589 (679)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~ 589 (679)
.+..++.|+ ++..+..+
T Consensus 313 -------------------------------------------------------------~kvvLvqia--~psr~~~~ 329 (797)
T PLN03063 313 -------------------------------------------------------------DKVMLVQIA--VPTRNDVP 329 (797)
T ss_pred -------------------------------------------------------------CcEEEEEEe--cCCCCchH
Confidence 112233332 32212222
Q ss_pred H---HHHHHHHHHHhCCC-CCcEEECC--------CchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCC----EE
Q 005746 590 Y---VKEILEFLSQHSNL-SKAMLWTP--------ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----KN 653 (679)
Q Consensus 590 y---~k~~L~~L~~~lnL-s~~V~ftG--------~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlP----VV 653 (679)
. ++..++.+....|- -..+.|+| ..+++..+|++|||||+||. .||||+|++||||||+| +|
T Consensus 330 ~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlV 407 (797)
T PLN03063 330 EYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLV 407 (797)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcc--ccccCcchhhHheeecCCCCCEE
Confidence 2 33334434321111 12345555 24799999999999999994 99999999999999999 99
Q ss_pred EeCCCCCccCC
Q 005746 654 ISQIELSRKDP 664 (679)
Q Consensus 654 ~S~~g~~r~~~ 664 (679)
+|+.+|..+..
T Consensus 408 lSe~~G~~~~l 418 (797)
T PLN03063 408 LSEFAGAGQSL 418 (797)
T ss_pred eeCCcCchhhh
Confidence 99999887654
No 83
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.42 E-value=5.2e-12 Score=132.95 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=45.0
Q ss_pred HhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 600 QHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 600 ~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
+..+..++|.++|++++++.+|++||++|..+ .|++++||||+|+|||+++.
T Consensus 250 ~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k~------gg~tl~EA~a~G~PvI~~~~ 301 (391)
T PRK13608 250 AKFKSNENVLILGYTKHMNEWMASSQLMITKP------GGITISEGLARCIPMIFLNP 301 (391)
T ss_pred HHhccCCCeEEEeccchHHHHHHhhhEEEeCC------chHHHHHHHHhCCCEEECCC
Confidence 33455678999999999999999999999744 58999999999999999964
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.40 E-value=5.5e-13 Score=151.77 Aligned_cols=188 Identities=16% Similarity=0.212 Sum_probs=119.4
Q ss_pred cCCEEEEechhhHHHHHHHHHH-hh-------ccCC---CCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHH
Q 005746 361 RVKLLVFLSESQTKQWLTWCEE-EK-------LKLR---SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~e-eg-------i~l~---sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~l 429 (679)
..+.+-|-+..-.+.++..|.. .+ +... .++.++|+|||.+.+....- +++ . +..
T Consensus 189 ~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~---------~~~-~----~~~ 254 (726)
T PRK14501 189 GADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQ---------DPE-V----QEE 254 (726)
T ss_pred cCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhc---------Cch-H----HHH
Confidence 4577777666666666666653 22 1111 13678899998775532210 011 1 111
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccccccccc
Q 005746 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSD 509 (679)
Q Consensus 430 R~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~ 509 (679)
...+|+.+ ++..+|+++||+++.||+..+|+|+..++++.|+.
T Consensus 255 ~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~---------------------------------- 297 (726)
T PRK14501 255 IRRLRQDL---RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEW---------------------------------- 297 (726)
T ss_pred HHHHHHHc---CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccc----------------------------------
Confidence 23455554 46779999999999999999999999998877651
Q ss_pred ccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCC-C-
Q 005746 510 DVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN-K- 587 (679)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~sn-k- 587 (679)
..++.+++|| +|+..+ +
T Consensus 298 ------------------------------------------------------------~~~v~lv~v~-~~sr~~~~~ 316 (726)
T PRK14501 298 ------------------------------------------------------------RGKVRLVQVA-VPSRTGVPQ 316 (726)
T ss_pred ------------------------------------------------------------cCCEEEEEEe-cCCCcchHH
Confidence 0123456554 333221 1
Q ss_pred hHHHHHHHHHHHHhCC----C---CCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHc-----CCCEE
Q 005746 588 VPYVKEILEFLSQHSN----L---SKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF-----GVPKN 653 (679)
Q Consensus 588 ~~y~k~~L~~L~~~ln----L---s~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~-----GlPVV 653 (679)
...++..++.++.+.| . ..-+.|.|. .++++.+|++|||||+||. .||||+|++||||| |+||+
T Consensus 317 ~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vl 394 (726)
T PRK14501 317 YQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLIL 394 (726)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEeccc--ccccCcccceEEEEcCCCCceEEE
Confidence 1224444555543322 1 123456665 5899999999999999994 99999999999999 55666
Q ss_pred EeCCCCCcc
Q 005746 654 ISQIELSRK 662 (679)
Q Consensus 654 ~S~~g~~r~ 662 (679)
+..+|+..+
T Consensus 395 s~~~G~~~~ 403 (726)
T PRK14501 395 SEMAGAAAE 403 (726)
T ss_pred ecccchhHH
Confidence 666676554
No 85
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.39 E-value=2.8e-11 Score=128.11 Aligned_cols=255 Identities=18% Similarity=0.182 Sum_probs=147.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEE------EcCC---Cc--------c
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL------EDRG---EP--------S 305 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl------~~r~---~~--------s 305 (679)
.||+++ .+-||+-++--.||++|.+.+.++.++-. +|+.|+ ..|++.. ...+ .. .
T Consensus 6 ~ki~i~---aGgtsGhi~paal~~~l~~~~~~~~~~g~--gg~~m~---~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~ 77 (385)
T TIGR00215 6 PTIALV---AGEASGDILGAGLRQQLKEHYPNARFIGV--AGPRMA---AEGCEVLYSMEELSVMGLREVLGRLGRLLKI 77 (385)
T ss_pred CeEEEE---eCCccHHHHHHHHHHHHHhcCCCcEEEEE--ccHHHH---hCcCccccChHHhhhccHHHHHHHHHHHHHH
Confidence 466666 34466666655999999999999876643 233333 2222111 1001 00 0
Q ss_pred ------hhhhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEe------eehhhHHHHHHHHHHhhcCCEEEEechhhH
Q 005746 306 ------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWW------IMENRREYFDRAKLVLDRVKLLVFLSESQT 373 (679)
Q Consensus 306 ------fk~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWw------I~E~rreYfdr~k~vl~rvk~LIfvSesq~ 373 (679)
.-...+||+|+....++..+.-...++. .+. +++.+ ..+. .+.+.+...++.+++.++...
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~-~gi-p~v~~i~P~~waw~~-----~~~r~l~~~~d~v~~~~~~e~ 150 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKD-PGI-KIIYYISPQVWAWRK-----WRAKKIEKATDFLLAILPFEK 150 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhh-CCC-CEEEEeCCcHhhcCc-----chHHHHHHHHhHhhccCCCcH
Confidence 0124689999986554433321112221 232 23332 1121 123444556788888777666
Q ss_pred HHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEE--ec
Q 005746 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL--SS 451 (679)
Q Consensus 374 k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsv--Gr 451 (679)
+.+. ..++ +..+|.+.+-++... +.+ .+...|+++|++++.++|+.+ |+
T Consensus 151 ~~~~----~~g~----~~~~vGnPv~~~~~~------------~~~---------~~~~~r~~lgl~~~~~~Ilvl~GSR 201 (385)
T TIGR00215 151 AFYQ----KKNV----PCRFVGHPLLDAIPL------------YKP---------DRKSAREKLGIDHNGETLALLPGSR 201 (385)
T ss_pred HHHH----hcCC----CEEEECCchhhhccc------------cCC---------CHHHHHHHcCCCCCCCEEEEECCCC
Confidence 5532 2232 245566665433110 001 123467889999888777665 36
Q ss_pred cCC-CCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccc
Q 005746 452 INP-GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (679)
Q Consensus 452 Inp-~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (679)
..+ .|++..+++|++.+.++.|+
T Consensus 202 ~aei~k~~~~ll~a~~~l~~~~p~-------------------------------------------------------- 225 (385)
T TIGR00215 202 GSEVEKLFPLFLKAAQLLEQQEPD-------------------------------------------------------- 225 (385)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 666 79999999999988654432
Q ss_pred ccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEE
Q 005746 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (679)
Q Consensus 531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~f 610 (679)
.++++. ++.+. .++.++.+.+.+++...|.+
T Consensus 226 ------------------------------------------~~~vi~--~~~~~-----~~~~~~~~~~~~~~~~~v~~ 256 (385)
T TIGR00215 226 ------------------------------------------LRRVLP--VVNFK-----RRLQFEQIKAEYGPDLQLHL 256 (385)
T ss_pred ------------------------------------------eEEEEE--eCCch-----hHHHHHHHHHHhCCCCcEEE
Confidence 223432 23221 12334455555666667776
Q ss_pred CCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 611 TPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 611 tG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
.+. ++..+|++||++|.+| |.+++||||+|+|+|.+
T Consensus 257 ~~~--~~~~~l~aADl~V~~S-------Gt~tlEa~a~G~P~Vv~ 292 (385)
T TIGR00215 257 IDG--DARKAMFAADAALLAS-------GTAALEAALIKTPMVVG 292 (385)
T ss_pred ECc--hHHHHHHhCCEEeecC-------CHHHHHHHHcCCCEEEE
Confidence 653 6788999999999999 77999999999999987
No 86
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=7.8e-12 Score=115.55 Aligned_cols=68 Identities=31% Similarity=0.397 Sum_probs=60.1
Q ss_pred HHHhCCCCCcEEECCCch--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 598 LSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 598 L~~~lnLs~~V~ftG~~t--dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
+....+..+.|.|+|... ++..+|+.||++|+||. .|+||++++||||+|+|||+++.++.++....+
T Consensus 249 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~ 318 (381)
T COG0438 249 LAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDG 318 (381)
T ss_pred HHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEEECCCCChHHHhcCC
Confidence 556677788999999965 88889999999999997 699999999999999999999999888766664
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.27 E-value=1.4e-10 Score=119.34 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=45.2
Q ss_pred HhCCCCCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe-CCCCCcc
Q 005746 600 QHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS-QIELSRK 662 (679)
Q Consensus 600 ~~lnLs~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S-~~g~~r~ 662 (679)
+.++..++|+|+|. ..++..+|++||++|.+| |.+++||||||+|||++ ++++..+
T Consensus 249 ~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~~~EA~a~g~PvI~~~~~~~~~e 307 (365)
T TIGR00236 249 KHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-------GGVQEEAPSLGKPVLVLRDTTERPE 307 (365)
T ss_pred HHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-------hhHHHHHHHcCCCEEECCCCCCChH
Confidence 33466678999996 457889999999999998 45789999999999996 6665443
No 88
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.24 E-value=4.5e-10 Score=124.22 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=115.2
Q ss_pred cEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHH
Q 005746 391 PAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIE 470 (679)
Q Consensus 391 ~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lie 470 (679)
+.++|.|||.+.+.-.. . +++. ....+.+|+++| +..+|++++|+++.||+...|+|+..+++
T Consensus 250 v~~~PiGID~~~f~~~~-----~----~~~~-----~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~ 312 (487)
T TIGR02398 250 LGAHPVGTDPERIRSAL-----A----AASI-----REMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLE 312 (487)
T ss_pred EEEEECEecHHHHHHHh-----c----CchH-----HHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHH
Confidence 57788888877542211 0 1111 122456888888 67899999999999999999999999999
Q ss_pred hCCCCchhhhhhcccccccccccccccccccccccccccccCCcccccccccccccccccccccccCCCCcccccCCCCc
Q 005746 471 QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDA 550 (679)
Q Consensus 471 q~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 550 (679)
+.|+. |
T Consensus 313 ~~Pe~------------------------~-------------------------------------------------- 318 (487)
T TIGR02398 313 RRPEL------------------------L-------------------------------------------------- 318 (487)
T ss_pred hCccc------------------------c--------------------------------------------------
Confidence 88862 1
Q ss_pred cccCCccchhhhcccccccccceEEEEEEeeCCCCCCh--HHHHHHHHHHHHhC-------CCCCcEEECCC--chhHHH
Q 005746 551 VSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV--PYVKEILEFLSQHS-------NLSKAMLWTPA--TTRVAS 619 (679)
Q Consensus 551 ~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~--~y~k~~L~~L~~~l-------nLs~~V~ftG~--~tdVas 619 (679)
.++.+++|| +++-.+-. .-++..++.++.+. +...-+.|++. .+++..
T Consensus 319 --------------------gkv~Lvqi~-~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~a 377 (487)
T TIGR02398 319 --------------------GKVTLVTAC-VPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSA 377 (487)
T ss_pred --------------------CceEEEEEe-CCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHH
Confidence 234456553 22211111 22455566666553 55666888888 479999
Q ss_pred HHHHcCEEEEcCCCCCCCccHHHHHHHHcCC----CEEEeCCCCCccC
Q 005746 620 LYSAADVYVINSQGLGETFGRVTIEAMAFGV----PKNISQIELSRKD 663 (679)
Q Consensus 620 lysAADV~VlpSq~~~EgFGrV~IEAMA~Gl----PVV~S~~g~~r~~ 663 (679)
+|++|||++++| +.|||++|..|+|||+. |+|.|+.+|..+.
T Consensus 378 lYr~ADV~lvT~--lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~ 423 (487)
T TIGR02398 378 WFAMADVMWITP--LRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVE 423 (487)
T ss_pred HHHhCCEEEECc--cccccCcchhhHHhhhcCCCCCEEEeccccchhh
Confidence 999999999999 59999999999999999 9999999987653
No 89
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.15 E-value=5.8e-11 Score=104.45 Aligned_cols=51 Identities=29% Similarity=0.329 Sum_probs=40.8
Q ss_pred CcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 606 ~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
++|.|+|+.+++..+|++||+.++|+. ..|+++..++||||+|+|||+++.
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~-~~~~~~~k~~e~~~~G~pvi~~~~ 103 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSR-FNEGFPNKLLEAMAAGKPVIASDN 103 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BS-S-SCC-HHHHHHHCTT--EEEEHH
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEee-CCCcCcHHHHHHHHhCCCEEECCc
Confidence 589999999999999999999999996 478999999999999999999999
No 90
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.99 E-value=4e-09 Score=93.65 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=76.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEc-----CCC--cc---------hhhh
Q 005746 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED-----RGE--PS---------FKTS 309 (679)
Q Consensus 246 LlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~-----r~~--~s---------fk~~ 309 (679)
+...+....||+++.+.+|+++|.+.||+|++++....+....+ .+..... ... .. ....
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE----LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKK 78 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST----EEEE---TT-SSTSS--HHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh----ccceeeeeecccccccchhHHHHHHHHHHHHH
Confidence 34445556899999999999999999999999876655544333 1111111 010 01 1123
Q ss_pred cCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhH------------HHHH-H-HHHHhhcCCEEEEechhhHHH
Q 005746 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------------EYFD-R-AKLVLDRVKLLVFLSESQTKQ 375 (679)
Q Consensus 310 ~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rr------------eYfd-r-~k~vl~rvk~LIfvSesq~k~ 375 (679)
.++|+||++......+...... ..++++.+|..-. .++. . ...+..+++.+|++|+.+++.
T Consensus 79 ~~~DiVh~~~~~~~~~~~~~~~-----~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~ 153 (177)
T PF13439_consen 79 EKPDIVHIHGPPAFWIALLACR-----KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDE 153 (177)
T ss_dssp HT-SEEECCTTHCCCHHHHHHH-----CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHH
T ss_pred cCCCeEEecccchhHHHHHhcc-----CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHH
Confidence 5899999887543222111111 3346666665330 1111 1 234467899999999999887
Q ss_pred HHHHHHHhhccCCCCcEEeeCCCchhhh
Q 005746 376 WLTWCEEEKLKLRSQPAVVPLSVNDELA 403 (679)
Q Consensus 376 w~~~~~eegi~l~sq~~VVP~gVndEla 403 (679)
.. +.+++. .++.|||||||.+.|
T Consensus 154 l~----~~~~~~-~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 154 LI----KFGIPP-EKIHVIYNGIDTDRF 176 (177)
T ss_dssp HH----HHT--S-S-EEE----B-CCCH
T ss_pred HH----HhCCcc-cCCEEEECCccHHHc
Confidence 43 356553 579999999987643
No 91
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.64 E-value=4.8e-06 Score=89.76 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=72.5
Q ss_pred cceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHc
Q 005746 571 QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF 648 (679)
Q Consensus 571 ~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~ 648 (679)
.+++++++|++-... ...+++. |+.++.+++++++|.|--- -+++..+|..|-+-|..= +.|-||+.+.|+||+
T Consensus 304 ~~iKL~ivGScRnee-D~ervk~-Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~M--wNEHFGIsVVEyMAA 379 (465)
T KOG1387|consen 304 SPIKLIIVGSCRNEE-DEERVKS-LKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTM--WNEHFGISVVEYMAA 379 (465)
T ss_pred CCceEEEEeccCChh-hHHHHHH-HHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhh--hhhhcchhHHHHHhc
Confidence 356678666665432 2456664 7778899999999999765 479999999999999887 599999999999999
Q ss_pred CCCEEEeCCCCCccC
Q 005746 649 GVPKNISQIELSRKD 663 (679)
Q Consensus 649 GlPVV~S~~g~~r~~ 663 (679)
|+-.|+-+.||-+-|
T Consensus 380 GlIpi~h~SgGP~lD 394 (465)
T KOG1387|consen 380 GLIPIVHNSGGPLLD 394 (465)
T ss_pred CceEEEeCCCCCcee
Confidence 999999999987754
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.63 E-value=1.8e-06 Score=102.17 Aligned_cols=189 Identities=15% Similarity=0.251 Sum_probs=116.2
Q ss_pred cCCEEEEechhhHHHHHHHHHH-hhcc-------CCC---CcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHH
Q 005746 361 RVKLLVFLSESQTKQWLTWCEE-EKLK-------LRS---QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~e-egi~-------l~s---q~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~l 429 (679)
.++.|=|-+..-.+.++.-|.. .+.. ... ++.+.|.|||.+.+.-. +..| + . +..
T Consensus 287 ~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~-----~~~~----~-v----~~~ 352 (934)
T PLN03064 287 AADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRA-----LETP----Q-V----QQH 352 (934)
T ss_pred cCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHH-----hcCh----h-H----HHH
Confidence 3577777777777777776754 2221 111 24566888877654321 1111 1 1 112
Q ss_pred HHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccccccccc
Q 005746 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSD 509 (679)
Q Consensus 430 R~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~ 509 (679)
.+.+|+.++ +..+|+.++|+++.||+...|+||..++++.|+. |
T Consensus 353 ~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~------------------------r--------- 396 (934)
T PLN03064 353 IKELKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEW------------------------R--------- 396 (934)
T ss_pred HHHHHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccc------------------------c---------
Confidence 356777776 5679999999999999999999999999988862 1
Q ss_pred ccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChH
Q 005746 510 DVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVP 589 (679)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~ 589 (679)
.++.++.|. +.+..+-..
T Consensus 397 -------------------------------------------------------------~kVVLvQIa-~psr~~v~e 414 (934)
T PLN03064 397 -------------------------------------------------------------DKVVLLQIA-VPTRTDVPE 414 (934)
T ss_pred -------------------------------------------------------------CCEEEEEEc-CCCCCCcHH
Confidence 112233332 222211122
Q ss_pred H--HHHHHHHHHHh----CCCCC--cEEECCC---chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCC----CEEE
Q 005746 590 Y--VKEILEFLSQH----SNLSK--AMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV----PKNI 654 (679)
Q Consensus 590 y--~k~~L~~L~~~----lnLs~--~V~ftG~---~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~Gl----PVV~ 654 (679)
| ++..+..++.+ +|-.+ -|++... ..++..+|++|||+|++| +.|||++|..|+|||+. ++|.
T Consensus 415 Y~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTs--lrDGmNLva~Eyva~~~~~~GvLIL 492 (934)
T PLN03064 415 YQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTS--LRDGMNLVSYEFVACQDSKKGVLIL 492 (934)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCc--cccccCchHHHHHHhhcCCCCCeEE
Confidence 3 22334333333 22211 1333322 378899999999999999 59999999999999943 4444
Q ss_pred eCCCCCccC
Q 005746 655 SQIELSRKD 663 (679)
Q Consensus 655 S~~g~~r~~ 663 (679)
|+..|....
T Consensus 493 SEfaGaa~~ 501 (934)
T PLN03064 493 SEFAGAAQS 501 (934)
T ss_pred eCCCchHHH
Confidence 888876643
No 93
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.55 E-value=1.8e-05 Score=81.08 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 594 ILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 594 ~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
.++.+.++. .+|...+++++++++|++||+.|.++ |.++.||+|+|+|+|+-...
T Consensus 215 ~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 215 ELKKFAKEY---PNIILFIDVENMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEEec
Confidence 344454432 47999999999999999999999954 68999999999999987653
No 94
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.49 E-value=1.5e-06 Score=76.03 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcC--CCc------c----h---h--hhcCcCEEEE
Q 005746 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR--GEP------S----F---K--TSMKADLVIA 317 (679)
Q Consensus 255 gGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r--~~~------s----f---k--~~~kaDLVia 317 (679)
||++..+.+||++|.++||+|++++....+. .++....++.+.... ... . + - ...++|+||+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~ 79 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE-DDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHA 79 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG-G-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc-ccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEe
Confidence 7999999999999999999999998665443 333556677776422 111 0 1 1 2368999999
Q ss_pred cchhHHHHHHHHHHhcCCCCccEEEeeehhh--------HHHHHH-HHHHhhcCCEEEEechhhHHHHHHHHHHhhccCC
Q 005746 318 GSAVCATWIDQYITRFPAGGSQVVWWIMENR--------REYFDR-AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388 (679)
Q Consensus 318 ~Sav~aswI~qyia~~pag~s~VvWwI~E~r--------reYfdr-~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~ 388 (679)
++.. +.++..++. ... ..+++..+|... ..++.. ...++.+++.++++|+...+.. .+.+++ +
T Consensus 80 ~~~~-~~~~~~~~~-~~~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l----~~~g~~-~ 151 (160)
T PF13579_consen 80 HSPT-AGLVAALAR-RRR-GIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYL----RRYGVP-P 151 (160)
T ss_dssp EHHH-HHHHHHHHH-HHH-T--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHH----HHH----G
T ss_pred cccc-hhHHHHHHH-Hcc-CCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHH----HHhCCC-C
Confidence 9853 223332222 112 234555555431 112211 2466788999999999998874 335654 3
Q ss_pred CCcEEeeCC
Q 005746 389 SQPAVVPLS 397 (679)
Q Consensus 389 sq~~VVP~g 397 (679)
+++.|||||
T Consensus 152 ~ri~vipnG 160 (160)
T PF13579_consen 152 DRIHVIPNG 160 (160)
T ss_dssp GGEEE----
T ss_pred CcEEEeCcC
Confidence 578999987
No 95
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.47 E-value=1.1e-05 Score=83.52 Aligned_cols=61 Identities=8% Similarity=-0.094 Sum_probs=45.0
Q ss_pred CCCcEEECCC--chhHHHHHHHcCEEEEcCCC-----C----CCCccHHHHHHHHcCCCEEEeCCCCCccCCC
Q 005746 604 LSKAMLWTPA--TTRVASLYSAADVYVINSQG-----L----GETFGRVTIEAMAFGVPKNISQIELSRKDPT 665 (679)
Q Consensus 604 Ls~~V~ftG~--~tdVaslysAADV~VlpSq~-----~----~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~ 665 (679)
+.++|.|+|+ .++++.+|+. |+.+++... . .-.+|.-+.|+||||+|||+++.++..+-.+
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~ 276 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIV 276 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHH
Confidence 5578999999 4789999998 654443310 0 1246778999999999999999988765443
No 96
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.25 E-value=3.1e-05 Score=88.28 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEE-CCCchhHH-HHHHHcCEEEE-cCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 590 YVKEILEFLSQHSNLSKAMLW-TPATTRVA-SLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 590 y~k~~L~~L~~~lnLs~~V~f-tG~~tdVa-slysAADV~Vl-pSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
|.+ .+..++++...+++|.| .++...++ .+|++|||+++ ||++ .|+.|..=+=||..|.+..++--|..-+
T Consensus 443 ~i~-~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E 516 (601)
T TIGR02094 443 IIQ-RIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGE 516 (601)
T ss_pred HHH-HHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccc
Confidence 444 35567776667778877 55666666 78999999999 8874 9999999999999998888776544433
No 97
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.22 E-value=7.4e-06 Score=91.62 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=43.8
Q ss_pred CcEEECCCch--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEE
Q 005746 606 KAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKN 653 (679)
Q Consensus 606 ~~V~ftG~~t--dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV 653 (679)
++|.|.|.++ ++.+.|..|.++|..|. .|+|+ ..||||++|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee
Confidence 7999999998 99999999999999997 99999 9999999999999
No 98
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.16 E-value=0.00084 Score=71.23 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=36.9
Q ss_pred EEECCCc-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 608 MLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 608 V~ftG~~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
+...++. ++++.+|++||++|.-+- +.++.|++++|+|.|.-..
T Consensus 236 ~~~~~f~~~~m~~~~~~adlvIsr~G------~~t~~E~~~~g~P~I~iP~ 280 (352)
T PRK12446 236 YRQFEYVHGELPDILAITDFVISRAG------SNAIFEFLTLQKPMLLIPL 280 (352)
T ss_pred cEEecchhhhHHHHHHhCCEEEECCC------hhHHHHHHHcCCCEEEEcC
Confidence 3445887 689999999999998862 6789999999999998854
No 99
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.09 E-value=2.6e-05 Score=88.85 Aligned_cols=259 Identities=17% Similarity=0.208 Sum_probs=112.5
Q ss_pred HhhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHc
Q 005746 358 VLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEM 437 (679)
Q Consensus 358 vl~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkel 437 (679)
....++.+-+||+.+++. |+..=-+. .-.|+|||+|.+.+ .+. ..|. .+-...|+.+.+-++..+
T Consensus 218 aA~~AdvFTTVSeITa~E----a~~LL~r~--pDvV~pNGl~v~~~-~~~-------~efq-nl~~~~k~ki~~fv~~~f 282 (633)
T PF05693_consen 218 AAHYADVFTTVSEITAKE----AEHLLKRK--PDVVTPNGLNVDKF-PAL-------HEFQ-NLHAKAKEKIHEFVRGHF 282 (633)
T ss_dssp HHHHSSEEEESSHHHHHH----HHHHHSS----SEE----B-GGGT-SST-------THHH-HHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCeeeehhhhHHHH----HHHHhCCC--CCEEcCCCcccccc-ccc-------hHHH-HHHHHHHHHHHHHHHHHh
Confidence 345689999999999887 55321111 13889999987632 111 0011 111122333344445433
Q ss_pred -C---CC-CCCEEEEEEeccC-CCCCHHHHHHHHHHHHHhCCCC-chhhhhhccc--cccccc-cccccccccccccccc
Q 005746 438 -G---LT-DQDMLVLSLSSIN-PGKGQLLLVESAQLMIEQEPSM-DDSKIRKSRN--VGRKKS-SLTSRHHLRGRGLLQM 507 (679)
Q Consensus 438 -G---L~-d~d~LVlsvGrIn-p~KGq~lLLeA~~~lieq~p~~-~~~~~~~~~~--~~~~~~-~~~~~h~lr~~~l~~~ 507 (679)
| +. |+.++|...||.. ..||.|+||||++.+-...... .+ + ..+- |-.... +| .-.-|||+++...
T Consensus 283 ~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~--~-tVVaFii~pa~~~~~-~ve~l~~~a~~~~ 358 (633)
T PF05693_consen 283 YGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSD--K-TVVAFIIVPAKTNSF-NVESLKGQAVTKQ 358 (633)
T ss_dssp TT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S----EEEEEEE---SEEEE--HHHHHHHHHHHH
T ss_pred cccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCC--C-eEEEEEEecCccCCc-CHHHHhhHHHHHH
Confidence 3 22 5667778889985 5699999999999875321000 00 0 0000 000000 00 0011222222221
Q ss_pred ccccCCccc-ccc-cccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCC
Q 005746 508 SDDVGLSSN-ELS-VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (679)
Q Consensus 508 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~s 585 (679)
+++.--... .+. -.-|+-..- -+|++---+...|. ...||.+++.-...-|...-- .+-+..
T Consensus 359 l~~t~~~i~~~~g~~~~~~~~~~--------~~p~~~~~~~~~~~-----~~lkr~i~~~~r~~lPPi~TH---~l~d~~ 422 (633)
T PF05693_consen 359 LRDTVDEIQEKIGKRLFESCLSG--------RLPDLNELLDKEDI-----VRLKRCIFALQRNSLPPITTH---NLHDDS 422 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--------SS-SHHHCS-HHHH-----HHHHHHHHTT--T----SBSE---EETTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--------CCCChHHhcChhhH-----HHHHHHHHHhccCCCCCeeee---CCCCCc
Confidence 111100000 000 000000000 12332222222232 234777776655555553221 122222
Q ss_pred CChHHHHHHHHHHHHhCCCC----C--cEEECCC---------chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCC
Q 005746 586 NKVPYVKEILEFLSQHSNLS----K--AMLWTPA---------TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV 650 (679)
Q Consensus 586 nk~~y~k~~L~~L~~~lnLs----~--~V~ftG~---------~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~Gl 650 (679)
+ ..+|..+. +++|- + .|.|.|. .-+..+++.+||+-|+|| ++|++|-+-+|+.|+|+
T Consensus 423 ~-----DpILn~ir-r~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPS--YYEPWGYTPlE~~a~gV 494 (633)
T PF05693_consen 423 N-----DPILNMIR-RLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPS--YYEPWGYTPLECTAFGV 494 (633)
T ss_dssp T------HHHHHHH-HTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE----SSBSS-HHHHHHHHTT-
T ss_pred c-----CHHHHHHH-hCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeecc--ccccccCChHHHhhcCC
Confidence 1 22343332 34553 3 4677776 247889999999999999 59999999999999999
Q ss_pred CEEEeCCCC
Q 005746 651 PKNISQIEL 659 (679)
Q Consensus 651 PVV~S~~g~ 659 (679)
|.|.|+..|
T Consensus 495 PsITTnLsG 503 (633)
T PF05693_consen 495 PSITTNLSG 503 (633)
T ss_dssp -EEEETTBH
T ss_pred ceeeccchh
Confidence 999999875
No 100
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.80 E-value=0.0084 Score=62.78 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=42.1
Q ss_pred CCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 603 nLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
.++++|++.++. +...+|..||++|... | ..++.||+++|+|+|+.....
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~hg-----G-~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVHHG-----G-AGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeeecC-----C-chhHHHHHHcCCCEEeeCCCC
Confidence 567899999996 4789999999999766 1 369999999999999987653
No 101
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=97.80 E-value=4.9e-05 Score=83.66 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=70.0
Q ss_pred hhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCch-hHHHHHHHcCEEEEcCCCCCCCcc
Q 005746 561 KVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT-RVASLYSAADVYVINSQGLGETFG 639 (679)
Q Consensus 561 ~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~t-dVaslysAADV~VlpSq~~~EgFG 639 (679)
+++..+...-|++++=+ | .|.. +...|..| .++ ++.+++.|.++ ++.++|..||+|+-.|. +|+|+
T Consensus 295 ~~i~~Lv~~lPd~~f~I-g-a~te------~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin~--~e~~~ 361 (438)
T TIGR02919 295 EHLEEIVQALPDYHFHI-A-ALTE------MSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDINH--GNEIL 361 (438)
T ss_pred HHHHHHHHhCCCcEEEE-E-ecCc------ccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEccc--cccHH
Confidence 67888888889988875 4 3321 23456556 334 88899999887 99999999999999996 99999
Q ss_pred HHHHHHHHcCCCEEEeCCC
Q 005746 640 RVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 640 rV~IEAMA~GlPVV~S~~g 658 (679)
+++.|||+.|+||++.++-
T Consensus 362 ~al~eA~~~G~pI~afd~t 380 (438)
T TIGR02919 362 NAVRRAFEYNLLILGFEET 380 (438)
T ss_pred HHHHHHHHcCCcEEEEecc
Confidence 9999999999999999876
No 102
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.77 E-value=0.013 Score=62.55 Aligned_cols=43 Identities=33% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEE
Q 005746 605 SKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNI 654 (679)
Q Consensus 605 s~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~ 654 (679)
.++|.+++. ..+...+++.||++|-+|- | .+.||+++|+|||.
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------g-gi~EA~~lg~Pvv~ 305 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNADAVIGNSS------S-GIIEAPSFGVPTIN 305 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCEEEEcCh------h-HHHhhhhcCCCEEe
Confidence 357999996 5899999999999999994 2 33899999999994
No 103
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.77 E-value=0.003 Score=63.84 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCcEEECCCc-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCC
Q 005746 605 SKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDP 664 (679)
Q Consensus 605 s~~V~ftG~~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~ 664 (679)
.++|.+.+++ .++++++++||++|..+= ++ ++.||+++|+|++.-...+..|+.
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad~vIs~~G-----~~-t~~Ea~~~g~P~l~ip~~~~~EQ~ 285 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAADLVISKGG-----YT-TISEALALGKPALVIPRPGQDEQE 285 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCCEEEECCC-----HH-HHHHHHHcCCCEEEEeCCCCchHH
Confidence 6789999987 999999999999999882 33 589999999999998887655543
No 104
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0078 Score=68.84 Aligned_cols=281 Identities=14% Similarity=0.091 Sum_probs=162.5
Q ss_pred cccccccCCcccccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC-C-ChhHHhcCCeEEEEcC
Q 005746 224 EKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-G-LMPELARRKIKVLEDR 301 (679)
Q Consensus 224 ~~~~~~c~~k~~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G-g-L~~EL~rrgIkVl~~r 301 (679)
.-|--.|+ +.-++...+.||=+|.|+|.---.-..+.++-+.+.+.-++|.++.+...+ + +...+...--++++..
T Consensus 243 ~~~~~~~~--~~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~ 320 (620)
T COG3914 243 LVRFPIRD--ENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIG 320 (620)
T ss_pred ccccccch--hhccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccC
Confidence 34444555 223444556789999999987666667888888888888999998877332 2 3333333333455544
Q ss_pred C--Ccchh---hhcCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeehhhHHHHHHHHHHhhcCCEEEE----echhh
Q 005746 302 G--EPSFK---TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVF----LSESQ 372 (679)
Q Consensus 302 ~--~~sfk---~~~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E~rreYfdr~k~vl~rvk~LIf----vSesq 372 (679)
+ +.... .....||.+--+.....-..+.++|.|+.. ||-| .- |+.-. -+...+.+|. +.+..
T Consensus 321 ~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPi-qvsw-lG-----y~aT~--g~p~~DY~I~D~y~vPp~a 391 (620)
T COG3914 321 RMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI-QVSW-LG-----YPATT--GSPNMDYFISDPYTVPPTA 391 (620)
T ss_pred CcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCce-EEee-cc-----ccccc--CCCcceEEeeCceecCchH
Confidence 2 11111 123466665322111111335677877653 4555 31 22210 1122233321 23444
Q ss_pred HHHHHHHHHHhhccCCCCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEecc
Q 005746 373 TKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSI 452 (679)
Q Consensus 373 ~k~w~~~~~eegi~l~sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrI 452 (679)
..+|.+-. ++++ -...| ++.. . .-+|.. -|.++||+++.++++|++.
T Consensus 392 e~yysEkl----~RLp--~cy~p--~d~~-------~--~v~p~~---------------sR~~lglp~~avVf~c~~n- 438 (620)
T COG3914 392 EEYYSEKL----WRLP--QCYQP--VDGF-------E--PVTPPP---------------SRAQLGLPEDAVVFCCFNN- 438 (620)
T ss_pred HHHHHHHH----Hhcc--cccCC--CCCc-------c--cCCCCc---------------chhhcCCCCCeEEEEecCC-
Confidence 44543211 1221 01112 2111 0 112221 2568999999999988774
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccccccCCccccccccccccccccccc
Q 005746 453 NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPV 532 (679)
Q Consensus 453 np~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (679)
..|-..-++.-+..++...|+
T Consensus 439 -~~K~~pev~~~wmqIL~~vP~---------------------------------------------------------- 459 (620)
T COG3914 439 -YFKITPEVFALWMQILSAVPN---------------------------------------------------------- 459 (620)
T ss_pred -cccCCHHHHHHHHHHHHhCCC----------------------------------------------------------
Confidence 566666666666666665554
Q ss_pred ccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCC-CcEEEC
Q 005746 533 RKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KAMLWT 611 (679)
Q Consensus 533 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs-~~V~ft 611 (679)
..++|.| | + ..+-+...|+.+++..|+. ++..|.
T Consensus 460 ----------------------------------------Svl~L~~--~-~--~~~~~~~~l~~la~~~Gv~~eRL~f~ 494 (620)
T COG3914 460 ----------------------------------------SVLLLKA--G-G--DDAEINARLRDLAEREGVDSERLRFL 494 (620)
T ss_pred ----------------------------------------cEEEEec--C-C--CcHHHHHHHHHHHHHcCCChhheeec
Confidence 2334332 2 2 2345889999999999997 699999
Q ss_pred CC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 612 PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 612 G~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
|. +++.-..|.-||+|+=.- .=+=+-+++||+-+|+||++=
T Consensus 495 p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa~daLwm~vPVlT~ 537 (620)
T COG3914 495 PPAPNEDHRARYGIADLVLDTY---PYGGHTTASDALWMGVPVLTR 537 (620)
T ss_pred CCCCCHHHHHhhchhheeeecc---cCCCccchHHHHHhcCceeee
Confidence 98 567778999999987544 333456899999999999863
No 105
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.45 E-value=0.0057 Score=68.40 Aligned_cols=193 Identities=17% Similarity=0.256 Sum_probs=105.7
Q ss_pred cCCEEEEechhhHHHHHHHHHH-hhccCCCC------------cEEeeCCCchhhhh-hhccccCCCCCCCChhhHHHhh
Q 005746 361 RVKLLVFLSESQTKQWLTWCEE-EKLKLRSQ------------PAVVPLSVNDELAF-VAGFTCSLNTPTSSPEKMREKR 426 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~e-egi~l~sq------------~~VVP~gVndElaf-vagi~~slntp~fspek~~ekr 426 (679)
.+|.|=|-+..-.+.++..|+. .+....+. +.+.|.|||.+.+. .+. +|..
T Consensus 197 ~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~------~~~v--------- 261 (474)
T PF00982_consen 197 GADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLAR------SPEV--------- 261 (474)
T ss_dssp TSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-------S-----------
T ss_pred cCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhcc------ChHH---------
Confidence 4688888888888888888875 33322221 45667777765431 111 1111
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccc
Q 005746 427 NLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQ 506 (679)
Q Consensus 427 ~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~ 506 (679)
......++++++ ++..+|+++.|++.-||...=+.|+..++++.|+. |
T Consensus 262 ~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~------------------------~------ 309 (474)
T PF00982_consen 262 QERAEELREKFK--GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEY------------------------R------ 309 (474)
T ss_dssp -HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGG------------------------T------
T ss_pred HHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCc------------------------c------
Confidence 112355777765 23489999999999999999999999999998862 1
Q ss_pred cccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCC
Q 005746 507 MSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN 586 (679)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~sn 586 (679)
.++.++-|+.... .+
T Consensus 310 ----------------------------------------------------------------~kv~liQi~~psr-~~ 324 (474)
T PF00982_consen 310 ----------------------------------------------------------------GKVVLIQIAVPSR-ED 324 (474)
T ss_dssp ----------------------------------------------------------------TTEEEEEE--B-S-TT
T ss_pred ----------------------------------------------------------------CcEEEEEEeeccC-cc
Confidence 1233444443222 12
Q ss_pred ChH--HHHHHHHHHH----HhCCCCC--cEEECCC---chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCC----
Q 005746 587 KVP--YVKEILEFLS----QHSNLSK--AMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP---- 651 (679)
Q Consensus 587 k~~--y~k~~L~~L~----~~lnLs~--~V~ftG~---~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlP---- 651 (679)
-.. -+++.++.++ ..+|-.+ -|.+.-. ..+...+|++|||++++| +-+|+-+|..|..||..+
T Consensus 325 ~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTs--lrDGmNLva~Eyva~q~~~~Gv 402 (474)
T PF00982_consen 325 VPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTS--LRDGMNLVAKEYVACQDDNPGV 402 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE----SSBS--HHHHHHHHHS-TS--E
T ss_pred chhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecc--hhhccCCcceEEEEEecCCCCc
Confidence 221 1233333333 3344333 2333332 478999999999999999 599999999999999876
Q ss_pred EEEeCCCCCccCCCCC
Q 005746 652 KNISQIELSRKDPTSG 667 (679)
Q Consensus 652 VV~S~~g~~r~~~~~~ 667 (679)
+|.|+..|+...-.+|
T Consensus 403 LiLSefaGaa~~L~~~ 418 (474)
T PF00982_consen 403 LILSEFAGAAEQLSEA 418 (474)
T ss_dssp EEEETTBGGGGT-TTS
T ss_pred eEeeccCCHHHHcCCc
Confidence 7788877766544433
No 106
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.31 E-value=0.01 Score=64.72 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 595 L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
++...+..+..-.+... ..+-.++|++||+.+..| |.+|+||+.+|+|.|+.
T Consensus 234 i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 234 IEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVA 285 (373)
T ss_pred HHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEE
Confidence 33344434443344433 345678999999999999 78999999999998874
No 107
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.30 E-value=0.0094 Score=53.16 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=60.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCc--ch-----------hhhc
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SF-----------KTSM 310 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~--sf-----------k~~~ 310 (679)
|||+|.... ...++++|.+|.+.|++|++++.. ++........++++++..... .+ -...
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~--~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~ 73 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPR--NDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKE 73 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcC--CCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccC
Confidence 577776655 347899999999999999999863 333444557788888764211 11 1235
Q ss_pred CcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeeeh
Q 005746 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME 346 (679)
Q Consensus 311 kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~E 346 (679)
++|+||+|+......+..+++.+. +..++++.+|.
T Consensus 74 ~~DvIh~h~~~~~~~~~~l~~~~~-~~~~~i~~~hg 108 (139)
T PF13477_consen 74 KPDVIHCHTPSPYGLFAMLAKKLL-KNKKVIYTVHG 108 (139)
T ss_pred CCCEEEEecCChHHHHHHHHHHHc-CCCCEEEEecC
Confidence 899999998654333333333332 22456677764
No 108
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.04 E-value=0.011 Score=69.87 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=50.6
Q ss_pred HHHHHhCCCCCcEEECC-CchhHH-HHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCC
Q 005746 596 EFLSQHSNLSKAMLWTP-ATTRVA-SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELS 660 (679)
Q Consensus 596 ~~L~~~lnLs~~V~ftG-~~tdVa-slysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~ 660 (679)
..++++...+++|.|+. +...++ .++++|||++.||+.-.|+.|..=+=||.-|.+-+++--|--
T Consensus 537 ~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww 603 (778)
T cd04299 537 VEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWW 603 (778)
T ss_pred HHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcc
Confidence 34566566777888754 566666 789999999999975489999999999999988777765433
No 109
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.00 E-value=0.0035 Score=70.19 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCC-CcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 593 EILEFLSQHSNLS-KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 593 ~~L~~L~~~lnLs-~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
+.++...+..|+. +++.|.+.. .+--..|..+||++=+-- =.=|.+++||+.+|+|||.-...
T Consensus 328 ~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p---~nG~TTt~dALwmGVPvVTl~G~ 393 (468)
T PF13844_consen 328 ARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFP---YNGGTTTLDALWMGVPVVTLPGE 393 (468)
T ss_dssp HHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SS---S--SHHHHHHHHHT--EEB---S
T ss_pred HHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCC---CCCcHHHHHHHHcCCCEEeccCC
Confidence 4455555667887 789999874 344567889999986552 22368999999999999976544
No 110
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=96.93 E-value=0.0075 Score=67.74 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=115.3
Q ss_pred cCCEEEEechhhHHHHHHHHHHh-hccCCC-----------CcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 005746 361 RVKLLVFLSESQTKQWLTWCEEE-KLKLRS-----------QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~ee-gi~l~s-----------q~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~ 428 (679)
.+|.|=|-+..-.+.++..|+.. +..... .+.+.|.|||.+.+.-.. ..| . ..
T Consensus 179 ~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a-----~~~----~------~~ 243 (474)
T PRK10117 179 DYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQA-----AGP----L------PP 243 (474)
T ss_pred hCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHh-----hch----H------HH
Confidence 35666676766667777666542 221111 245667788766432110 011 1 11
Q ss_pred HHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccccccccccccccccc
Q 005746 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (679)
Q Consensus 429 lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~~ 508 (679)
..+.+|++++ +..+|+.+-|++.-||+..=++|+..++++.|+. |
T Consensus 244 ~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~------------------------~-------- 288 (474)
T PRK10117 244 KLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH------------------------H-------- 288 (474)
T ss_pred HHHHHHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhh------------------------c--------
Confidence 1345777775 5678999999999999999999999999999873 1
Q ss_pred cccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCCh
Q 005746 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (679)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~ 588 (679)
.++.++.|+ +-+-.+-.
T Consensus 289 --------------------------------------------------------------gkvvlvQia-~psR~~v~ 305 (474)
T PRK10117 289 --------------------------------------------------------------GKIRYTQIA-PTSRGDVQ 305 (474)
T ss_pred --------------------------------------------------------------CCEEEEEEc-CCCCCccH
Confidence 122234332 22221112
Q ss_pred HH--HHHHHHHHHHh----CCCCC--cEEECCC---chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCC-----E
Q 005746 589 PY--VKEILEFLSQH----SNLSK--AMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP-----K 652 (679)
Q Consensus 589 ~y--~k~~L~~L~~~----lnLs~--~V~ftG~---~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlP-----V 652 (679)
+| ++..++.++.+ +|-.+ -|+++-. .+++..+|++|||.+++| +-+|+-+|.-|-.||.-| +
T Consensus 306 ~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTp--lRDGMNLVAkEyva~q~~~~~GvL 383 (474)
T PRK10117 306 AYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTP--LRDGMNLVAKEYVAAQDPANPGVL 383 (474)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecc--cccccccccchheeeecCCCCccE
Confidence 22 23344444433 33322 1333322 468889999999999999 599999999999999763 7
Q ss_pred EEeCCCCCcc
Q 005746 653 NISQIELSRK 662 (679)
Q Consensus 653 V~S~~g~~r~ 662 (679)
|-|...|.-.
T Consensus 384 ILSefAGaA~ 393 (474)
T PRK10117 384 VLSQFAGAAN 393 (474)
T ss_pred EEecccchHH
Confidence 7777766543
No 111
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.93 E-value=0.29 Score=54.69 Aligned_cols=198 Identities=16% Similarity=0.193 Sum_probs=109.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeCCCCC-ChhHHhcCCeEEEEcCCCcc-----hhhhcCcCEE
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEPS-----FKTSMKADLV 315 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~--G~~VsaVvLs~~Gg-L~~EL~rrgIkVl~~r~~~s-----fk~~~kaDLV 315 (679)
.=++-+|..|.|- -+.+.-|.++|.+. +..+.+-+.+..|. ...++-...+.+...+-+.. |....+||++
T Consensus 49 ~p~vWiHaaSVGE-v~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~ 127 (419)
T COG1519 49 GPLVWIHAASVGE-VLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLL 127 (419)
T ss_pred CCeEEEEecchhH-HHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEE
Confidence 4578889998653 46778899999888 77776666555552 22333333366666555543 3446789998
Q ss_pred EEcchhHHHHHHHHHHhcCCCCccEEEeee-hhh--HHHHHH---HHHHhhcCCEEEEechhhHHHHHHHHHHhhccCCC
Q 005746 316 IAGSAVCATWIDQYITRFPAGGSQVVWWIM-ENR--REYFDR---AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRS 389 (679)
Q Consensus 316 ia~Sav~aswI~qyia~~pag~s~VvWwI~-E~r--reYfdr---~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~l~s 389 (679)
|.--.- -|-.-+.+....+.+.++---. ..| +.|-.+ .+.++..++.++.-|+...+.+. ..|++.
T Consensus 128 Ii~EtE--lWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~----~LGa~~-- 199 (419)
T COG1519 128 IIMETE--LWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR----SLGAKP-- 199 (419)
T ss_pred EEEecc--ccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH----hcCCcc--
Confidence 764322 2544333322334443321100 001 112211 35667788989888887776643 355531
Q ss_pred CcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHH
Q 005746 390 QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMI 469 (679)
Q Consensus 390 q~~VVP~gVndElafvagi~~slntp~fspek~~ekr~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~li 469 (679)
+.| .| |-. |. ++.+ |+. ....+..|..++.+ ..+++..|. ++ .--++.+++++.+.
T Consensus 200 -v~v--~G-NlK--fd------~~~~---~~~-----~~~~~~~r~~l~~~--r~v~iaaST-H~-GEeei~l~~~~~l~ 255 (419)
T COG1519 200 -VVV--TG-NLK--FD------IEPP---PQL-----AAELAALRRQLGGH--RPVWVAAST-HE-GEEEIILDAHQALK 255 (419)
T ss_pred -eEE--ec-cee--ec------CCCC---hhh-----HHHHHHHHHhcCCC--CceEEEecC-CC-chHHHHHHHHHHHH
Confidence 122 12 111 10 1111 111 12356788888876 555665665 33 34577999999998
Q ss_pred HhCCC
Q 005746 470 EQEPS 474 (679)
Q Consensus 470 eq~p~ 474 (679)
++.|+
T Consensus 256 ~~~~~ 260 (419)
T COG1519 256 KQFPN 260 (419)
T ss_pred hhCCC
Confidence 87765
No 112
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.86 E-value=0.073 Score=61.66 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 618 aslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
.+++++||+.+..| |.||+||+.+|+|.|+.
T Consensus 483 ~~~m~aaD~aLaaS-------GTaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 483 YELMRECDCALAKC-------GTIVLETALNQTPTIVT 513 (608)
T ss_pred HHHHHhcCeeeecC-------CHHHHHHHHhCCCEEEE
Confidence 69999999999999 89999999999998874
No 113
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.1 Score=56.70 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=41.8
Q ss_pred EEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCC
Q 005746 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELS 660 (679)
Q Consensus 608 V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~ 660 (679)
+...++.+|++.+|++||++|.=+ =+.++-|+.|+|+|+|.-.-+..
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRa------Ga~Ti~E~~a~g~P~IliP~p~~ 283 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRA------GALTIAELLALGVPAILVPYPPG 283 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCC------cccHHHHHHHhCCCEEEeCCCCC
Confidence 999999999999999999999877 26899999999999998766544
No 114
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.75 E-value=0.15 Score=55.10 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=36.2
Q ss_pred EEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 608 V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
+...+..-|..+++.-||++|--+ |-...||...|+|+|.+-.|
T Consensus 233 ~~i~~~~vd~~~Ll~~a~l~Ig~g-------gTMa~EAA~LGtPaIs~~~g 276 (335)
T PF04007_consen 233 VIIPPEPVDGLDLLYYADLVIGGG-------GTMAREAALLGTPAISCFPG 276 (335)
T ss_pred ccccCCCCCHHHHHHhcCEEEeCC-------cHHHHHHHHhCCCEEEecCC
Confidence 555666668889999999999888 45789999999999987543
No 115
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=96.20 E-value=0.029 Score=60.82 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=38.8
Q ss_pred cEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 607 ~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
.+.+.++..+++.+|++||++|..| |-++.|||++|+|+|....
T Consensus 280 ~~~v~~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~ 323 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPG 323 (396)
T ss_pred ceEEEechHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeC
Confidence 3666778889999999999999999 4688999999999999874
No 116
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.18 E-value=0.058 Score=64.58 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=64.4
Q ss_pred cCCEEEEechhhHHHHHHHHHH-hhccCCC--------------CcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHh
Q 005746 361 RVKLLVFLSESQTKQWLTWCEE-EKLKLRS--------------QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~e-egi~l~s--------------q~~VVP~gVndElafvagi~~slntp~fspek~~ek 425 (679)
.++.|=|-...-++.++..|.. .|+.... .+.+.|.||+.+.+.-. +.+| +. .+
T Consensus 257 ~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~-----~~~~----~~-~~- 325 (854)
T PLN02205 257 NSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSV-----LSLP----ET-EA- 325 (854)
T ss_pred cCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHH-----hcCh----hH-HH-
Confidence 4677777777777777776764 2332211 24567888876643211 1112 11 11
Q ss_pred hHHHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCC
Q 005746 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPS 474 (679)
Q Consensus 426 r~~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~ 474 (679)
..+.++++++- ++..+|+.+-|++.-||+..=|+|+..++++.|+
T Consensus 326 ---~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~ 370 (854)
T PLN02205 326 ---KVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPE 370 (854)
T ss_pred ---HHHHHHHHhcc-CCCEEEEEccCcccccCHHHHHHHHHHHHHhCcc
Confidence 12346666652 3568999999999999999999999999999987
No 117
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.21 Score=56.61 Aligned_cols=188 Identities=21% Similarity=0.331 Sum_probs=121.5
Q ss_pred cCCEEEEechhhHHHHHHHHHHhh-------ccCC------CCcEEeeCCCchhhhhhhccccCCCCCCCChhhHHHhhH
Q 005746 361 RVKLLVFLSESQTKQWLTWCEEEK-------LKLR------SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRN 427 (679)
Q Consensus 361 rvk~LIfvSesq~k~w~~~~~eeg-------i~l~------sq~~VVP~gVndElafvagi~~slntp~fspek~~ekr~ 427 (679)
.++.|=|-.+.-+..+...|.... +... .+....|.|+|.+.+.-+ +..|... .+
T Consensus 203 ~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~-----~~~~~v~-~~------ 270 (486)
T COG0380 203 GADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERA-----LKSPSVQ-EK------ 270 (486)
T ss_pred cCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHh-----hcCCchh-hH------
Confidence 467777878877787777777532 1111 235667888887654332 2223222 11
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEeccCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccccccccccccccccc
Q 005746 428 LLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (679)
Q Consensus 428 ~lR~svRkelGL~d~d~LVlsvGrInp~KGq~lLLeA~~~lieq~p~~~~~~~~~~~~~~~~~~~~~~~h~lr~~~l~~~ 507 (679)
-+.++++++ .+..+++++-|++.-||..-=+.|+..+++..|.. |
T Consensus 271 --~~el~~~~~--~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~------------------------~------- 315 (486)
T COG0380 271 --VLELKAELG--RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEW------------------------R------- 315 (486)
T ss_pred --HHHHHHHhc--CCceEEEEehhcccccCcHHHHHHHHHHHHhChhh------------------------h-------
Confidence 134566654 23779999999999999999999999999988863 1
Q ss_pred ccccCCcccccccccccccccccccccccCCCCcccccCCCCccccCCccchhhhcccccccccceEEEEEEeeCCCCCC
Q 005746 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK 587 (679)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk 587 (679)
.++.++-|+ ..+-.+.
T Consensus 316 ---------------------------------------------------------------~kvvliQi~-~pSr~~v 331 (486)
T COG0380 316 ---------------------------------------------------------------GKVVLLQIA-PPSREDV 331 (486)
T ss_pred ---------------------------------------------------------------CceEEEEec-CCCcccc
Confidence 122334332 2332223
Q ss_pred hHH--HHHHHHHHHHhC-CCCCcEEECCC--------chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcC----CCE
Q 005746 588 VPY--VKEILEFLSQHS-NLSKAMLWTPA--------TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFG----VPK 652 (679)
Q Consensus 588 ~~y--~k~~L~~L~~~l-nLs~~V~ftG~--------~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~G----lPV 652 (679)
.+| ++..++.++.+- +.-..+-|+|- .+++..+|.+|||.+++| +-||+-+|..|..||- =|.
T Consensus 332 ~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtp--lrDGMNLvakEyVa~q~~~~G~L 409 (486)
T COG0380 332 EEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTP--LRDGMNLVAKEYVAAQRDKPGVL 409 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeecc--ccccccHHHHHHHHhhcCCCCcE
Confidence 444 333344444332 23344555554 478999999999999999 5999999999999984 377
Q ss_pred EEeCCCCCc
Q 005746 653 NISQIELSR 661 (679)
Q Consensus 653 V~S~~g~~r 661 (679)
|-|+..|+.
T Consensus 410 iLSeFaGaa 418 (486)
T COG0380 410 ILSEFAGAA 418 (486)
T ss_pred EEeccccch
Confidence 777776654
No 118
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=1.8 Score=48.18 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=52.6
Q ss_pred eeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHcCEEEE--cCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVI--NSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 580 ~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAADV~Vl--pSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
+.|.|+-+..| .+.+.+.++.+--.-++. .+|.+.+++.||.-|. .|. -+=-.|+-++.-.-||+||+|-
T Consensus 298 ITGKGPlkE~Y-----~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSS-SGLDLPMKVVDMFGcglPvcA~ 371 (444)
T KOG2941|consen 298 ITGKGPLKEKY-----SQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAV 371 (444)
T ss_pred EcCCCchhHHH-----HHHHHHhcccceeeeecccccccchhHhhccccceEeeecC-cccCcchhHHHhhcCCCceeee
Confidence 45665444444 444555677653344555 6899999999997663 343 2666899999999999999998
Q ss_pred CCCCCc
Q 005746 656 QIELSR 661 (679)
Q Consensus 656 ~~g~~r 661 (679)
+..-.-
T Consensus 372 ~fkcl~ 377 (444)
T KOG2941|consen 372 NFKCLD 377 (444)
T ss_pred cchhHH
Confidence 876544
No 119
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.55 E-value=0.0085 Score=50.84 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=31.5
Q ss_pred EEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCccCCCCC
Q 005746 627 YVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRKDPTSG 667 (679)
Q Consensus 627 ~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~~~~~~ 667 (679)
++.|++ .++++..++||||||+|||+++.++.++....|
T Consensus 2 ~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~ 40 (92)
T PF13524_consen 2 NLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDG 40 (92)
T ss_pred EeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCC
Confidence 455675 699999999999999999999987766554444
No 120
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=95.48 E-value=0.48 Score=47.57 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=84.5
Q ss_pred CeEEEEeCC---CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEE--cCCCcch----------h
Q 005746 243 RKFILIFHE---LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE--DRGEPSF----------K 307 (679)
Q Consensus 243 rKILlI~he---LsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~--~r~~~sf----------k 307 (679)
+||.+|.+- ..+||-|..+-+|+..|.+.|++|+|.+.+...+.. +..=.|++++. .+...++ .
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~-~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~ 80 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK-EFEYNGVRLVYIPAPKNGSAESIIYDFLSLL 80 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC-CcccCCeEEEEeCCCCCCchHHHHHHHHHHH
Confidence 356666665 347999999999999999999999998866544322 22224555543 3222111 1
Q ss_pred hh--------cCcCEEEEcchhHHHHHHHHHHhcCCCCccEEEeee--hhh--------HHHHHHHHHH-hhcCCEEEEe
Q 005746 308 TS--------MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIM--ENR--------REYFDRAKLV-LDRVKLLVFL 368 (679)
Q Consensus 308 ~~--------~kaDLVia~Sav~aswI~qyia~~pag~s~VvWwI~--E~r--------reYfdr~k~v-l~rvk~LIfv 368 (679)
.+ .+.|+|+....-.+.++.-++..+...+.+++--++ |-+ +.|+..++.+ ...++.+|+.
T Consensus 81 ~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaD 160 (185)
T PF09314_consen 81 HALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIAD 160 (185)
T ss_pred HHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEc
Confidence 11 145677654322122222233333332333432221 111 2355444433 4568999999
Q ss_pred chhhHHHHHHHHHHhhccCCCCcEEeeCCCc
Q 005746 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVN 399 (679)
Q Consensus 369 Sesq~k~w~~~~~eegi~l~sq~~VVP~gVn 399 (679)
|+...+++.+. .+ +.+..+||.|.|
T Consensus 161 s~~I~~y~~~~---y~---~~~s~~IaYGad 185 (185)
T PF09314_consen 161 SKGIQDYIKER---YG---RKKSTFIAYGAD 185 (185)
T ss_pred CHHHHHHHHHH---cC---CCCcEEecCCCC
Confidence 99999986542 33 245788998853
No 121
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.83 E-value=5.3 Score=42.86 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHHhCCCCCcE-EECCCc-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 598 LSQHSNLSKAM-LWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 598 L~~~lnLs~~V-~ftG~~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
|.+.+.-...+ .|-+.- .-+..+|+.||.+|... +.-. -+-||.+.|+||.+-..++
T Consensus 201 L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~----DSvS-MvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 201 LRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTE----DSVS-MVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcC----ccHH-HHHHHHHcCCCEEEecCCC
Confidence 33333333555 775553 45889999999999876 3344 3679999999999998886
No 122
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.80 E-value=0.11 Score=57.17 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=28.9
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 617 VaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
-...+.+||+-++.| |.+++|+|.+|+|.|.+
T Consensus 258 ~~~a~~~aD~al~aS-------GT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 258 KRKAFAAADAALAAS-------GTATLEAALAGTPMVVA 289 (381)
T ss_pred HHHHHHHhhHHHHhc-------cHHHHHHHHhCCCEEEE
Confidence 356899999999999 78999999999999875
No 123
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=94.51 E-value=0.058 Score=50.45 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=38.1
Q ss_pred CCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 604 Ls~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
...+|...+++++++.+|++||+.|.-+= +.++.||+++|+|.|.-....
T Consensus 53 ~~~~v~~~~~~~~m~~~m~~aDlvIs~aG------~~Ti~E~l~~g~P~I~ip~~~ 102 (167)
T PF04101_consen 53 FNPNVKVFGFVDNMAELMAAADLVISHAG------AGTIAEALALGKPAIVIPLPG 102 (167)
T ss_dssp TTCCCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE--TT
T ss_pred cCCcEEEEechhhHHHHHHHcCEEEeCCC------ccHHHHHHHcCCCeeccCCCC
Confidence 33789999999999999999998777551 468899999999988765544
No 124
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=93.51 E-value=0.12 Score=53.69 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=43.7
Q ss_pred CCCcEEECCCc-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 604 LSKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 604 Ls~~V~ftG~~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
++++|.+.++. +++..+|++||++|..+- ++ ++.||+++|+|++.....+..+
T Consensus 227 ~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G-----~~-t~~Ea~~~g~P~l~ip~~~~~e 280 (321)
T TIGR00661 227 YNENVEIRRITTDNFKELIKNAELVITHGG-----FS-LISEALSLGKPLIVIPDLGQFE 280 (321)
T ss_pred cCCCEEEEECChHHHHHHHHhCCEEEECCC-----hH-HHHHHHHcCCCEEEEcCCCccc
Confidence 45788888887 599999999999999983 22 5889999999999988764333
No 125
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=93.42 E-value=0.65 Score=49.11 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=39.6
Q ss_pred CCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 604 Ls~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
++++|...++.+. ..+|..||++|..+- . .+++|||++|+|+|+....
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG-----~-~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG-----M-NSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC-----c-hHHHHHHHhCCCEEecCCc
Confidence 5688999988765 489999999998882 2 3789999999999997654
No 126
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.97 E-value=17 Score=40.74 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCCCCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCc
Q 005746 602 SNLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSR 661 (679)
Q Consensus 602 lnLs~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r 661 (679)
++-.++|.++.. ..+...|+..|=+.+..|- -..=||-.+|+||+.-....-|
T Consensus 258 L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSG-------giqEEAp~lg~Pvl~lR~~TER 312 (383)
T COG0381 258 LKNVERVKLIDPLGYLDFHNLMKNAFLILTDSG-------GIQEEAPSLGKPVLVLRDTTER 312 (383)
T ss_pred hCCCCcEEEeCCcchHHHHHHHHhceEEEecCC-------chhhhHHhcCCcEEeeccCCCC
Confidence 444455766666 4788999999999999994 3667999999999987666544
No 127
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=90.71 E-value=11 Score=39.73 Aligned_cols=48 Identities=13% Similarity=0.325 Sum_probs=32.8
Q ss_pred CCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 602 lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
....++|.+.....++.+++.+||++|.= +.-++.|++.++.|||--.
T Consensus 248 ~~~~~~i~~~~~~~~~~~ll~~aDiLITD-------ySSi~fD~~~l~KPiify~ 295 (369)
T PF04464_consen 248 KEDNSNIIFVSDNEDIYDLLAAADILITD-------YSSIIFDFLLLNKPIIFYQ 295 (369)
T ss_dssp TT-TTTEEE-TT-S-HHHHHHT-SEEEES-------S-THHHHHGGGT--EEEE-
T ss_pred hccCCcEEECCCCCCHHHHHHhcCEEEEe-------chhHHHHHHHhCCCEEEEe
Confidence 34567899988888999999999998863 3459999999999999553
No 128
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=90.61 E-value=32 Score=38.34 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=54.4
Q ss_pred eeCCCCCChHHHHHHHHHHHHhCCCCCcEEE-CCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 580 ~VGs~snk~~y~k~~L~~L~~~lnLs~~V~f-tG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
-.|-+.+...|.++..+. .+++--.+.+.. +.+ -++..++++.||+.+++.. .-+++|. ++=++.+|+||+.+.
T Consensus 220 PLsYg~~n~~Yi~~V~~~-~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~-RQQgiGn-I~lLl~~G~~v~L~~ 296 (360)
T PF07429_consen 220 PLSYGANNQAYIQQVIQA-GKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHN-RQQGIGN-ICLLLQLGKKVFLSR 296 (360)
T ss_pred ECCCCCchHHHHHHHHHH-HHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeec-hhhhHhH-HHHHHHcCCeEEEec
Confidence 345554556788775554 444433345654 444 4788999999999999998 6899995 566999999999886
Q ss_pred CC
Q 005746 657 IE 658 (679)
Q Consensus 657 ~g 658 (679)
-.
T Consensus 297 ~n 298 (360)
T PF07429_consen 297 DN 298 (360)
T ss_pred CC
Confidence 43
No 129
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=85.76 E-value=60 Score=35.57 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCCCcEEECCCc---hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCC
Q 005746 590 YVKEILEFLSQHSNLSKAMLWTPAT---TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELS 660 (679)
Q Consensus 590 y~k~~L~~L~~~lnLs~~V~ftG~~---tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~ 660 (679)
-++.+ +..+++-+.-+.|-+.. .-...++++||.++..-- .- .-.-||.|.|.||-+......
T Consensus 211 ~~~s~---l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD----Si-nM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 211 TVKSI---LKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD----SI-NMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred HHHHH---HHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecc----hh-hhhHHHhccCCCeEEEecCCc
Confidence 35544 44567777788888773 356689999999988753 11 235699999999998776654
No 130
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=82.47 E-value=21 Score=37.33 Aligned_cols=41 Identities=22% Similarity=0.150 Sum_probs=33.3
Q ss_pred EEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 608 V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
+-+.|.+ .+++.+++.||+||-+-.| .+==|-|.|+|+|+=
T Consensus 234 ~~l~g~~sL~el~ali~~a~l~I~~DSG-------p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 234 RNLAGETSLDEAVDLIALAKAVVTNDSG-------LMHVAAALNRPLVAL 276 (334)
T ss_pred ccCCCCCCHHHHHHHHHhCCEEEeeCCH-------HHHHHHHcCCCEEEE
Confidence 3467764 6999999999999999863 555678999999974
No 131
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=82.26 E-value=41 Score=40.56 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHH-------hCCCCC--cEEECCC-chhHH-HHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 588 VPYVKEILEFLSQ-------HSNLSK--AMLWTPA-TTRVA-SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 588 ~~y~k~~L~~L~~-------~lnLs~--~V~ftG~-~tdVa-slysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
...-|++++.+.+ +..+.+ +|.|++- .-.++ .++++|||....|+.-.|.-|..-+=||.-|.+-++|-
T Consensus 496 d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstl 575 (713)
T PF00343_consen 496 DYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTL 575 (713)
T ss_dssp -HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEES
T ss_pred cHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecc
Confidence 3445666655432 244555 6888887 33444 78899999999998668999999999999999999986
Q ss_pred CCC
Q 005746 657 IEL 659 (679)
Q Consensus 657 ~g~ 659 (679)
-|.
T Consensus 576 DG~ 578 (713)
T PF00343_consen 576 DGW 578 (713)
T ss_dssp STC
T ss_pred cch
Confidence 554
No 132
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=82.13 E-value=2.5 Score=43.09 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=35.4
Q ss_pred CcEEECCCchhHHHHHHHcCEEE-EcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 606 KAMLWTPATTRVASLYSAADVYV-INSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 606 ~~V~ftG~~tdVaslysAADV~V-lpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
..+.+.....++.+++..||.+| ++|+ |-+|||.+|+||++.--
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinSt--------vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINST--------VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECCH--------HHHHHHHcCCceEEecC
Confidence 45666667778999999999765 5665 99999999999999643
No 133
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.61 E-value=1.8 Score=46.81 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=55.3
Q ss_pred chhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCC
Q 005746 558 LRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGET 637 (679)
Q Consensus 558 ~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~Eg 637 (679)
..-|++++|..+..+.+.| +|+.. + -.+.... .+. ..+++.+.-.+.|++.|+..||..+...
T Consensus 173 lt~kvl~~L~~~~~nl~iV----~gs~~-p--~l~~l~k-~~~---~~~~i~~~~~~~dma~LMke~d~aI~Aa------ 235 (318)
T COG3980 173 LTLKVLAELEQKNVNLHIV----VGSSN-P--TLKNLRK-RAE---KYPNINLYIDTNDMAELMKEADLAISAA------ 235 (318)
T ss_pred hHHHHHHHhhccCeeEEEE----ecCCC-c--chhHHHH-HHh---hCCCeeeEecchhHHHHHHhcchheecc------
Confidence 3458899998888555443 57542 2 2344333 333 3467888888999999999999987665
Q ss_pred ccHHHHHHHHcCCC
Q 005746 638 FGRVTIEAMAFGVP 651 (679)
Q Consensus 638 FGrV~IEAMA~GlP 651 (679)
|.++-||...|+|
T Consensus 236 -GstlyEa~~lgvP 248 (318)
T COG3980 236 -GSTLYEALLLGVP 248 (318)
T ss_pred -chHHHHHHHhcCC
Confidence 7899999999999
No 134
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.46 E-value=30 Score=36.72 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=39.1
Q ss_pred HHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 596 EFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 596 ~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
+.+.+...-+..+.+.|.+ .+++.+++.||+||-+-.| .+==|-|+|+|+|+==
T Consensus 233 ~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSG-------p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 233 NEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSA-------PAHIAAAVNTPLICLF 288 (352)
T ss_pred HHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCH-------HHHHHHHcCCCEEEEE
Confidence 4444433333445678875 6999999999999999964 5556779999999754
No 135
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=78.12 E-value=3.9 Score=36.68 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCC
Q 005746 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE 303 (679)
Q Consensus 252 LsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~ 303 (679)
.+.+|--.-++.||.+|.++||+|.+++ ...+.+.+.+.|+...+...+
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~---~~~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLAT---PPDFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEE---TGGGHHHHHHTT-EEEESSSC
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEee---cccceecccccCceEEEecCC
Confidence 4455666668999999999999998654 346788888999999887555
No 136
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=77.12 E-value=9.2 Score=41.88 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=62.3
Q ss_pred hhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEE-CCC--chhHHHHHHHcCEEEEcCCCCCC
Q 005746 560 RKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPA--TTRVASLYSAADVYVINSQGLGE 636 (679)
Q Consensus 560 ~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~f-tG~--~tdVaslysAADV~VlpSq~~~E 636 (679)
-.+|..+...-.+-..|++ -.|-+++...|.++..+.-.+ +--.+++.. +.. -++...+++.||+.+++-. .-+
T Consensus 162 ie~L~~l~~~~~~~v~ii~-PlsYp~gn~~Yi~~V~~~~~~-lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~-RQQ 238 (322)
T PRK02797 162 IEALRALHQQFGDNVKIIV-PMGYPANNQAYIEEVRQAGLA-LFGAENFQILTEKLPFDDYLALLRQCDLGYFIFA-RQQ 238 (322)
T ss_pred HHHHHHHHHHhCCCeEEEE-ECCcCCCCHHHHHHHHHHHHH-hcCcccEEehhhhCCHHHHHHHHHhCCEEEEeec-hhh
Confidence 3455555443333334433 455544567888886665444 433245544 444 4789999999999999987 589
Q ss_pred CccHHHHHHHHcCCCEEEeCC
Q 005746 637 TFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 637 gFGrV~IEAMA~GlPVV~S~~ 657 (679)
++|. ++=.+.+|+||+.+.-
T Consensus 239 giGn-l~lLi~~G~~v~l~r~ 258 (322)
T PRK02797 239 GIGT-LCLLIQLGKPVVLSRD 258 (322)
T ss_pred HHhH-HHHHHHCCCcEEEecC
Confidence 9994 5668999999998843
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=75.36 E-value=47 Score=34.92 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 595 LEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 595 L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
.+++.+..+-+.-+-++|.+ .+++.+++.||+||-+-.| .+==|-|.|+|+|+=
T Consensus 230 ~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG-------p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 230 VNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV-------PMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH-------HHHHHHHcCCCEEEE
Confidence 44444433323345578875 5999999999999999863 566688999999985
No 138
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=74.95 E-value=1.8 Score=46.99 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=29.8
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEE
Q 005746 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNI 654 (679)
Q Consensus 616 dVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~ 654 (679)
+..++|++||+.+..| |-+|+|++++|+|.|.
T Consensus 228 ~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv 259 (347)
T PRK14089 228 DTHKALLEAEFAFICS-------GTATLEAALIGTPFVL 259 (347)
T ss_pred cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEE
Confidence 6678999999999999 7899999999999998
No 139
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=74.12 E-value=7.3 Score=42.00 Aligned_cols=83 Identities=19% Similarity=0.075 Sum_probs=49.5
Q ss_pred hhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCC--chhHHHHHHHcCEEEEcCCCCCCCc
Q 005746 561 KVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETF 638 (679)
Q Consensus 561 ~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~--~tdVaslysAADV~VlpSq~~~EgF 638 (679)
+++.++... ++...|+ ... |... ....+....+. + ++|.+... ..+.-.+++.||++|-+|
T Consensus 204 ~~l~~L~~~-~~~~vi~---~~h--n~p~-~~~~i~~~l~~--~-~~v~~~~~l~~~~~l~ll~~a~~vvgdS------- 266 (346)
T PF02350_consen 204 EALKALAER-QNVPVIF---PLH--NNPR-GSDIIIEKLKK--Y-DNVRLIEPLGYEEYLSLLKNADLVVGDS------- 266 (346)
T ss_dssp HHHHHHHHH-TTEEEEE---E----S-HH-HHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS-------
T ss_pred HHHHHHHhc-CCCcEEE---Eec--CCch-HHHHHHHHhcc--c-CCEEEECCCCHHHHHHHHhcceEEEEcC-------
Confidence 456666666 5555553 233 1222 33334433333 3 38888877 579999999999999999
Q ss_pred cHHHH-HHHHcCCCEEEeCCCCCc
Q 005746 639 GRVTI-EAMAFGVPKNISQIELSR 661 (679)
Q Consensus 639 GrV~I-EAMA~GlPVV~S~~g~~r 661 (679)
| -++ ||.++|+|||.-.-.+.|
T Consensus 267 s-GI~eEa~~lg~P~v~iR~~geR 289 (346)
T PF02350_consen 267 S-GIQEEAPSLGKPVVNIRDSGER 289 (346)
T ss_dssp H-HHHHHGGGGT--EEECSSS-S-
T ss_pred c-cHHHHHHHhCCeEEEecCCCCC
Confidence 4 566 999999999987544444
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=72.15 E-value=22 Score=36.13 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 594 ILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 594 ~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
..+.+.+..+-.+.+.+.|.+ .+++.+++.||++|-+.. |.+-+ |.|+|+|+|+=-..
T Consensus 167 ~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds------g~~Hl-A~a~~~p~i~l~g~ 226 (279)
T cd03789 167 LAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS------GPMHL-AAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC------HHHHH-HHHcCCCEEEEECC
Confidence 344444433323445667764 789999999999999873 44444 56999999886543
No 141
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=72.07 E-value=7.8 Score=34.06 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=60.1
Q ss_pred cCCccchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHH--HcCEEEEc
Q 005746 553 FGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS--AADVYVIN 630 (679)
Q Consensus 553 ~~~~~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslys--AADV~Vlp 630 (679)
+|.|+.-+.-+..+....++.. ++|++... .+..+...+.++++ ..+++.++++ ..|+.++.
T Consensus 6 iG~G~~g~~~~~~~~~~~~~~~--v~~v~d~~-------~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 6 IGAGSIGRRHLRALLRSSPDFE--VVAVCDPD-------PERAEAFAEKYGIP-------VYTDLEELLADEDVDAVIIA 69 (120)
T ss_dssp ESTSHHHHHHHHHHHHTTTTEE--EEEEECSS-------HHHHHHHHHHTTSE-------EESSHHHHHHHTTESEEEEE
T ss_pred ECCcHHHHHHHHHHHhcCCCcE--EEEEEeCC-------HHHHHHHHHHhccc-------chhHHHHHHHhhcCCEEEEe
Confidence 4666666666777777766663 34556653 22344456667776 3456788888 68999999
Q ss_pred CCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 631 SQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 631 Sq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
+. .+.-.-.+.+|+..|++|++-
T Consensus 70 tp--~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 70 TP--PSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp SS--GGGHHHHHHHHHHTTSEEEEE
T ss_pred cC--CcchHHHHHHHHHcCCEEEEE
Confidence 96 777888999999999999874
No 142
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=70.99 E-value=17 Score=40.13 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCC
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK 294 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrg 294 (679)
+|||+++..-. .|--.-.+.|+++|...||+|+..+ .+.+.+.+...|
T Consensus 1 ~mkil~~~~~~--~Ghv~p~~aL~~eL~~~gheV~~~~---~~~~~~~ve~ag 48 (406)
T COG1819 1 RMKILFVVCGA--YGHVNPCLALGKELRRRGHEVVFAS---TGKFKEFVEAAG 48 (406)
T ss_pred CceEEEEeccc--cccccchHHHHHHHHhcCCeEEEEe---CHHHHHHHHHhC
Confidence 47899887766 6666678899999999999998775 345666677778
No 143
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.63 E-value=37 Score=41.35 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHh-------CCCCC--cEEECCC-c-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 589 PYVKEILEFLSQH-------SNLSK--AMLWTPA-T-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 589 ~y~k~~L~~L~~~-------lnLs~--~V~ftG~-~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
..-|++++.+..- ..+.+ +|.|++- . +--..++.||||....|+.-.|.=|..=+=||.-|.+-++|--
T Consensus 583 ~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlD 662 (797)
T cd04300 583 YMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLD 662 (797)
T ss_pred HHHHHHHHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeeccc
Confidence 4455555554432 23555 7888877 3 4445789999999999986679999999999999999999855
Q ss_pred CC
Q 005746 658 EL 659 (679)
Q Consensus 658 g~ 659 (679)
|.
T Consensus 663 Ga 664 (797)
T cd04300 663 GA 664 (797)
T ss_pred ch
Confidence 43
No 144
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=68.16 E-value=95 Score=32.88 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=33.8
Q ss_pred EEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 608 V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
+-+.|.+ .+++.+++.||+||-+-.| .+==|-|.|+|+|+=
T Consensus 244 ~~l~g~~sL~el~ali~~a~l~I~nDTG-------p~HlAaA~g~P~val 286 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKAIVTNDSG-------LMHVAAALNRPLVAL 286 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCEEEecCCh-------HHHHHHHhCCCEEEE
Confidence 4566764 6999999999999999964 566688999999974
No 145
>PRK14986 glycogen phosphorylase; Provisional
Probab=66.86 E-value=62 Score=39.65 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=53.4
Q ss_pred HHHHHHHHHH---HH----hCCCCC--cEEECCC-c-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 589 PYVKEILEFL---SQ----HSNLSK--AMLWTPA-T-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 589 ~y~k~~L~~L---~~----~lnLs~--~V~ftG~-~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
..-|++++.+ ++ +..+.+ +|.|++- . +--..+++||||....|+.-.|.-|..=+=||.-|.+-++|--
T Consensus 596 ~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlD 675 (815)
T PRK14986 596 YMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLD 675 (815)
T ss_pred HHHHHHHHHHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccC
Confidence 3445555544 33 334555 7888877 3 4445789999999999986679999999999999999998876
Q ss_pred CCC
Q 005746 658 ELS 660 (679)
Q Consensus 658 g~~ 660 (679)
|..
T Consensus 676 G~n 678 (815)
T PRK14986 676 GAN 678 (815)
T ss_pred Cch
Confidence 643
No 146
>COG1647 Esterase/lipase [General function prediction only]
Probab=61.89 E-value=15 Score=38.86 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=39.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCC
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK 294 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrg 294 (679)
.+-||++|. .||.|.-+-.|+++|.++|++|++-.+..-|-+.++|..-+
T Consensus 15 ~~AVLllHG--FTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~ 64 (243)
T COG1647 15 NRAVLLLHG--FTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTT 64 (243)
T ss_pred CEEEEEEec--cCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCC
Confidence 467888887 69999999999999999999999876665555555665443
No 147
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=60.60 E-value=1e+02 Score=32.23 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 592 KEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 592 k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
++..+++.+. . ..+.++|.+ .+++.+++.||+||-+..| .+-=|-|+|+|+|+-=.
T Consensus 223 ~~~~~~i~~~--~-~~~~l~g~~sL~elaali~~a~l~I~nDSG-------p~HlA~A~g~p~valfG 280 (322)
T PRK10964 223 EQRAKRLAEG--F-PYVEVLPKLSLEQVARVLAGAKAVVSVDTG-------LSHLTAALDRPNITLYG 280 (322)
T ss_pred HHHHHHHHcc--C-CcceecCCCCHHHHHHHHHhCCEEEecCCc-------HHHHHHHhCCCEEEEEC
Confidence 3444555442 2 346677874 6899999999999999974 66778999999998544
No 148
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.47 E-value=30 Score=37.71 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCC---hhHHhcCCeEEEEcCCCcchhhhcCcCEEEEc
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL---~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~ 318 (679)
.++++++ |++. .-+.+|..|++.|++|+++.......+ ..+|...+++++...... .....+|+|+..
T Consensus 5 ~k~v~ii------G~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~d~vv~~ 75 (450)
T PRK14106 5 GKKVLVV------GAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE--EFLEGVDLVVVS 75 (450)
T ss_pred CCEEEEE------CCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch--hHhhcCCEEEEC
Confidence 4566554 4444 446999999999999987643321222 244556688876533221 122458998876
Q ss_pred ch
Q 005746 319 SA 320 (679)
Q Consensus 319 Sa 320 (679)
+.
T Consensus 76 ~g 77 (450)
T PRK14106 76 PG 77 (450)
T ss_pred CC
Confidence 54
No 149
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=58.00 E-value=19 Score=36.91 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred eEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Q 005746 244 KFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSK 282 (679)
Q Consensus 244 KILlI~heLs----mgGAplsmmeLAteL~s~G~~VsaVvLs~ 282 (679)
|||+|.-|.. .||-.-.+-.|+++|.+.|++|.+++..-
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 6889988876 47888999999999999999999887543
No 150
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=57.51 E-value=13 Score=40.87 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchh
Q 005746 250 HELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (679)
Q Consensus 250 heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav 321 (679)
|-.+.||+ -|..||..|.+.|++|++.-.........+|...|+++........ ....+|+|+..+++
T Consensus 3 hfigigG~--gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~--~~~~~d~vV~SpgI 70 (448)
T TIGR01081 3 HILGICGT--FMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQ--LEPKPDLVVIGNAM 70 (448)
T ss_pred EEEEECHH--hHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHH--CCCCCCEEEECCCC
Confidence 44677888 7889999999999998754211111122357778998875322111 11258999988765
No 151
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=57.18 E-value=42 Score=34.04 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=32.7
Q ss_pred chhHHHHHHHcCEEEEcCCCCCCC-ccHHHHHHHHcCC-CEEEeC
Q 005746 614 TTRVASLYSAADVYVINSQGLGET-FGRVTIEAMAFGV-PKNISQ 656 (679)
Q Consensus 614 ~tdVaslysAADV~VlpSq~~~Eg-FGrV~IEAMA~Gl-PVV~S~ 656 (679)
..+....|+.+...++|. +.+ +..-+.|||++|+ |||+++
T Consensus 227 ~~~~~~~l~~S~FCL~p~---G~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPR---GDGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred chHHHHhcccCeEEEECC---CCCcccchHHHHhhhceeeEEecC
Confidence 346788899998888876 554 8889999999996 999876
No 152
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=55.92 E-value=45 Score=33.58 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=38.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcC-CeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rr-gIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
.++++|+| ||++. ....++.|.++|++|+++.... ..-..++... .+.+...... ......+|+||+.+
T Consensus 9 ~~k~vLVI------GgG~v-a~~ka~~Ll~~ga~V~VIs~~~-~~~l~~l~~~~~i~~~~~~~~--~~~l~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIV------GGGKV-AGRRAITLLKYGAHIVVISPEL-TENLVKLVEEGKIRWKQKEFE--PSDIVDAFLVIAAT 78 (202)
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHHCCCeEEEEcCCC-CHHHHHHHhCCCEEEEecCCC--hhhcCCceEEEEcC
Confidence 35788887 55443 3567888999999998774211 1111233333 3554432111 11234689998865
No 153
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.67 E-value=38 Score=37.58 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=46.7
Q ss_pred cccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC---ChhHHhcCCeEEEEcCCCcchhhhcC
Q 005746 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPSFKTSMK 311 (679)
Q Consensus 235 ~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg---L~~EL~rrgIkVl~~r~~~sfk~~~k 311 (679)
+|..+...+||+++ ++|+ +-+.+|..|.+.|++|++.-...... ...+|...|+.+........ ...+
T Consensus 7 ~~~~~~~~~~i~v~----G~G~---sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~--~~~~ 77 (458)
T PRK01710 7 EFKKFIKNKKVAVV----GIGV---SNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLD--KLDG 77 (458)
T ss_pred HHhhhhcCCeEEEE----cccH---HHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChH--Hhcc
Confidence 45556566777665 3333 33488888999999987653222112 12457778988875432211 1246
Q ss_pred cCEEEEcchh
Q 005746 312 ADLVIAGSAV 321 (679)
Q Consensus 312 aDLVia~Sav 321 (679)
+|+|+...++
T Consensus 78 ~dlVV~Spgi 87 (458)
T PRK01710 78 FDVIFKTPSM 87 (458)
T ss_pred CCEEEECCCC
Confidence 8999887654
No 154
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=55.48 E-value=18 Score=37.12 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=49.1
Q ss_pred CcccccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH
Q 005746 232 RKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (679)
Q Consensus 232 ~k~~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL 290 (679)
..|+|++- ++.-|+.|..+++.-=.|..+++++.+|.+.|+.++.++|..+.|..+.-
T Consensus 23 QRGT~ae~-~~~eV~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lvLnaG~GvP~da 80 (194)
T TIGR03264 23 QRGTFAEC-GRNDVVAVAMSPGRRHITKPVCEITYALREAGIQTSVLVLNAGSGIPPDA 80 (194)
T ss_pred cceehhhc-cCCCEEEEecCcccccCCCcHHHHHHHHHHcCCccceEEEecCCCCCCcc
Confidence 45778876 44579999999999999999999999999999999999999877765543
No 155
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.52 E-value=61 Score=32.78 Aligned_cols=70 Identities=23% Similarity=0.195 Sum_probs=41.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcC-CeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rr-gIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
.++++|+| ||++ +...-+..|+++|+.|+++.... ..-..++.+. +++++..... ......+|+|++.+
T Consensus 8 ~gk~vlVv------GgG~-va~rk~~~Ll~~ga~VtVvsp~~-~~~l~~l~~~~~i~~~~~~~~--~~dl~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVV------GGGD-VALRKARLLLKAGAQLRVIAEEL-ESELTLLAEQGGITWLARCFD--ADILEGAFLVIAAT 77 (205)
T ss_pred CCCeEEEE------CcCH-HHHHHHHHHHHCCCEEEEEcCCC-CHHHHHHHHcCCEEEEeCCCC--HHHhCCcEEEEECC
Confidence 35688887 4444 44566788999999998775322 2222334443 5665543322 22235689998865
Q ss_pred h
Q 005746 320 A 320 (679)
Q Consensus 320 a 320 (679)
.
T Consensus 78 ~ 78 (205)
T TIGR01470 78 D 78 (205)
T ss_pred C
Confidence 3
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=51.50 E-value=32 Score=28.79 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCC----------ChhHHhcCCeEEEEc
Q 005746 259 LSMMELATELLSCGATVSAVVLSKRGG----------LMPELARRKIKVLED 300 (679)
Q Consensus 259 lsmmeLAteL~s~G~~VsaVvLs~~Gg----------L~~EL~rrgIkVl~~ 300 (679)
..-+|+|..|...|.+|+++...+.-. +.+.|.+.||+++..
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 356899999999999999886543221 224567789988764
No 157
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=51.15 E-value=72 Score=39.03 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=46.0
Q ss_pred CCC--cEEECCC--chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 604 LSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 604 Ls~--~V~ftG~--~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
+.+ +|.|++- .+--..+++||||....|+.-.|.-|..=+=||.-|.+-++|--|.
T Consensus 602 v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGa 661 (794)
T TIGR02093 602 VGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 661 (794)
T ss_pred hCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccch
Confidence 555 6888877 3455588999999999998667999999999999999999985443
No 158
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=51.14 E-value=56 Score=31.70 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcC-CeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rr-gIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
..++||+| ||++ .-...++.|.+.|++|++|. + .+.+++.+. .+.+...... -.....+|+|++-+
T Consensus 12 ~~~~vlVv------GGG~-va~rka~~Ll~~ga~V~VIs--p--~~~~~l~~l~~i~~~~~~~~--~~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVII------GGGK-IAYRKASGLKDTGAFVTVVS--P--EICKEMKELPYITWKQKTFS--NDDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEE------CCCH-HHHHHHHHHHhCCCEEEEEc--C--ccCHHHHhccCcEEEecccC--hhcCCCceEEEECC
Confidence 35778877 4443 44678889999999999773 2 244455443 2333321111 11234678988754
No 159
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=48.99 E-value=69 Score=33.39 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=39.6
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
+++|+| ||++... .=+..|+++|++|+||...-...+......-.|+++....... ....+++|++.+
T Consensus 26 ~~VLVV------GGG~VA~-RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~--dl~g~~LViaAT 93 (223)
T PRK05562 26 IKVLII------GGGKAAF-IKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE--FIKDKHLIVIAT 93 (223)
T ss_pred CEEEEE------CCCHHHH-HHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH--HhCCCcEEEECC
Confidence 466666 6666554 4456788899999988643222232222334577775432221 235689998865
No 160
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=48.17 E-value=64 Score=39.50 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=44.4
Q ss_pred cEEECCC-c-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 607 AMLWTPA-T-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 607 ~V~ftG~-~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
+|.|++- . +--..+++||||....|+.-.|.-|..=+=||.-|.+-++|--|.
T Consensus 609 kVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGa 663 (798)
T PRK14985 609 KVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGA 663 (798)
T ss_pred eEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccch
Confidence 6888877 3 444578999999999998668999999999999999999886554
No 161
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=47.98 E-value=48 Score=34.31 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCCCcEEECCCchhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHcCCCEEE
Q 005746 594 ILEFLSQHSNLSKAMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPKNI 654 (679)
Q Consensus 594 ~L~~L~~~lnLs~~V~ftG~~tdVaslysA--ADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~ 654 (679)
..+.++++++++ -..+++.++++. .|++++.+. ...-.=+++.|+..|++|++
T Consensus 42 ~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~ 96 (342)
T COG0673 42 RAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLC 96 (342)
T ss_pred HHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEE
Confidence 366777888876 446788889987 589999996 67777788999999999986
No 162
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=45.32 E-value=31 Score=34.33 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=30.0
Q ss_pred hHHHHHHH-cCEEEEcCCCC----CCCccHHHHHHHHcCCCEEEeCCC
Q 005746 616 RVASLYSA-ADVYVINSQGL----GETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 616 dVaslysA-ADV~VlpSq~~----~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
.+...+.. +|++|+|=-|. +.||-=++.|||+.|+||+++=-.
T Consensus 85 ~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 85 ALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 34444444 99999996442 344555789999999999986443
No 163
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=42.35 E-value=1.1e+02 Score=32.62 Aligned_cols=60 Identities=25% Similarity=0.239 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCCcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 591 VKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 591 ~k~~L~~L~~~lnLs~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
..+..+++.+. +...+...|.+ .+++.+++.||++|-|..| -+-=|-|.|+|+|+--...
T Consensus 219 e~e~~~~i~~~--~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg-------~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 219 EEERAEEIAKG--LPNAVILAGKTSLEELAALIAGADLVIGNDSG-------PMHLAAALGTPTIALYGPT 280 (334)
T ss_pred HHHHHHHHHHh--cCCccccCCCCCHHHHHHHHhcCCEEEccCCh-------HHHHHHHcCCCEEEEECCC
Confidence 34555666653 33344477775 6999999999999999963 4556889999999976444
No 164
>PRK06988 putative formyltransferase; Provisional
Probab=42.31 E-value=45 Score=35.77 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=41.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC--------ChhHHhcCCeEEEEcCC--Cc---chhhh
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG--------LMPELARRKIKVLEDRG--EP---SFKTS 309 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg--------L~~EL~rrgIkVl~~r~--~~---sfk~~ 309 (679)
+||+++ |.+..-....++|.+.|++|.+|+...+.+ +.+...+.||+++.... +. .....
T Consensus 3 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 3 PRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred cEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHh
Confidence 688887 333344566667788899998776543221 23344567999875221 11 12235
Q ss_pred cCcCEEEEc
Q 005746 310 MKADLVIAG 318 (679)
Q Consensus 310 ~kaDLVia~ 318 (679)
.++|++++-
T Consensus 76 ~~~Dliv~~ 84 (312)
T PRK06988 76 AAPDFIFSF 84 (312)
T ss_pred cCCCEEEEe
Confidence 689998753
No 165
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=42.24 E-value=4.4e+02 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=31.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg 285 (679)
+|++|...-+--|.......||..|++.|..|.++-.....+
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA 44 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 567776666666777778999999999999998776554444
No 166
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=42.22 E-value=1.6e+02 Score=30.51 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=32.4
Q ss_pred EECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 609 LWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 609 ~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
.+.|.+ .+++.+++.||++|-+-.| .+==|-|+|+|+|+==
T Consensus 238 ~l~g~~sL~el~ali~~a~l~I~~DSg-------p~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 238 VVLPKMSLAEVAALLAGADAVVGVDTG-------LTHLAAALDKPTVTLY 280 (319)
T ss_pred eecCCCCHHHHHHHHHcCCEEEeCCCh-------HHHHHHHcCCCEEEEE
Confidence 456754 5889999999999999863 5555779999999854
No 167
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=41.44 E-value=77 Score=33.95 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=42.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC-----------CChhHHhcCCeEEEEcCCC-----cch
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGE-----PSF 306 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G-----------gL~~EL~rrgIkVl~~r~~-----~sf 306 (679)
|||+++ |.+-.......+|.+.|++|..|+...+. .+.+...+.+|+|+..... ...
T Consensus 1 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~ 73 (313)
T TIGR00460 1 LRIVFF-------GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPL 73 (313)
T ss_pred CEEEEE-------CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHH
Confidence 467776 44445567777888899999877654321 1233345679999764321 112
Q ss_pred hhhcCcCEEEEc
Q 005746 307 KTSMKADLVIAG 318 (679)
Q Consensus 307 k~~~kaDLVia~ 318 (679)
....++|++++.
T Consensus 74 l~~~~~Dliv~~ 85 (313)
T TIGR00460 74 VRELKPDVIVVV 85 (313)
T ss_pred HHhhCCCEEEEc
Confidence 245689999864
No 168
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=41.06 E-value=1.9e+02 Score=35.40 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=52.4
Q ss_pred HHHHHHHHHH---HHhCCCCCcEEECCC-c-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCc
Q 005746 589 PYVKEILEFL---SQHSNLSKAMLWTPA-T-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSR 661 (679)
Q Consensus 589 ~y~k~~L~~L---~~~lnLs~~V~ftG~-~-tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r 661 (679)
.+-|++++.+ ++..|.-.+|.|++- . +-..-++.||||-...|..-.|.-|..-+=||.-|.+-++|--|..-
T Consensus 537 ~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanv 614 (750)
T COG0058 537 YAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANV 614 (750)
T ss_pred hHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHH
Confidence 3445544433 333344456777776 3 34447889999999999866799999999999999999998665433
No 169
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.03 E-value=88 Score=34.73 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=42.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC---CChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEc
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG---GLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G---gL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~ 318 (679)
.+++++| +.|+ .-|++|..|.+.|++|+++-..... .+.++|.+.|++++...... ....+|+|+..
T Consensus 16 ~~~v~vi----G~G~---~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s 85 (480)
T PRK01438 16 GLRVVVA----GLGV---SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTS 85 (480)
T ss_pred CCEEEEE----CCCH---HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEEC
Confidence 4566665 2233 4446788999999998875322111 13356778899987643221 23468999876
Q ss_pred chh
Q 005746 319 SAV 321 (679)
Q Consensus 319 Sav 321 (679)
+.+
T Consensus 86 ~Gi 88 (480)
T PRK01438 86 PGW 88 (480)
T ss_pred CCc
Confidence 543
No 170
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=40.58 E-value=32 Score=31.78 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=35.4
Q ss_pred chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 614 ~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
.+++..++..+||+|--|. .+..---+-.|+.+|+|+|+-.+|...+
T Consensus 58 ~~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 58 TDDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp BS-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred chhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 4788999999999999995 7777777788899999999998887654
No 171
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.73 E-value=1.2e+02 Score=29.67 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=44.3
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCCh-------hHHhcCCeEEEEcCCCcch-hhhcCcC
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-------PELARRKIKVLEDRGEPSF-KTSMKAD 313 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~-------~EL~rrgIkVl~~r~~~sf-k~~~kaD 313 (679)
.++|+++.-. +-.|+ --+-+|++|...|++|.++.+.....+. ..+...+++++........ .....+|
T Consensus 25 ~~~v~il~G~-GnNGg--Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d 101 (169)
T PF03853_consen 25 GPRVLILCGP-GNNGG--DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPAD 101 (169)
T ss_dssp T-EEEEEE-S-SHHHH--HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCES
T ss_pred CCeEEEEECC-CCChH--HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccccccc
Confidence 4566665433 33344 5678899999999999987666544433 2355678888875443322 2223789
Q ss_pred EEEE
Q 005746 314 LVIA 317 (679)
Q Consensus 314 LVia 317 (679)
+||-
T Consensus 102 lIID 105 (169)
T PF03853_consen 102 LIID 105 (169)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 172
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=38.77 E-value=1.3e+02 Score=29.85 Aligned_cols=56 Identities=29% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCC-CcEEECCCc--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEe
Q 005746 591 VKEILEFLSQHSNLS-KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNIS 655 (679)
Q Consensus 591 ~k~~L~~L~~~lnLs-~~V~ftG~~--tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S 655 (679)
.++..+.+.. +++ ..+.++|.+ .+++.+++.||++|-+-.| .+==|.|+|+|+|+=
T Consensus 150 ~~~~~~~~~~--~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~Dtg-------~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 150 EKEIADQIAA--GLQNPVINLAGKTSLRELAALISRADLVIGNDTG-------PMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHT--THTTTTEEETTTS-HHHHHHHHHTSSEEEEESSH-------HHHHHHHTT--EEEE
T ss_pred HHHHHHHHHH--hcccceEeecCCCCHHHHHHHHhcCCEEEecCCh-------HHHHHHHHhCCEEEE
Confidence 3555555554 332 267888874 6889999999999998853 555689999999986
No 173
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=38.71 E-value=57 Score=39.14 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchhH
Q 005746 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (679)
Q Consensus 252 LsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav~ 322 (679)
++.||. -|--||..|.+.|++|++.-.. ....+.+|...|+++...... .....+|+|+..+++.
T Consensus 10 iG~G~s--G~salA~~L~~~G~~V~~sD~~-~~~~~~~L~~~gi~~~~g~~~---~~~~~~d~vV~SpgI~ 74 (809)
T PRK14573 10 IGIGGI--GMSALAHILLDRGYSVSGSDLS-EGKTVEKLKAKGARFFLGHQE---EHVPEDAVVVYSSSIS 74 (809)
T ss_pred EEecHH--hHHHHHHHHHHCCCeEEEECCC-CChHHHHHHHCCCEEeCCCCH---HHcCCCCEEEECCCcC
Confidence 566664 3445688899999998764321 223456788889998754321 1123589999887653
No 174
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=38.40 E-value=89 Score=28.59 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChh
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP 288 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~ 288 (679)
|++-|+-..+..|.....++||..|.++|..|.++-+....+...
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~ 45 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLS 45 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcc
Confidence 566677767778999999999999999999988887766555333
No 175
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=38.26 E-value=1.2e+02 Score=31.78 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHH-----------HHHHHHcCCCEEEe
Q 005746 587 KVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRV-----------TIEAMAFGVPKNIS 655 (679)
Q Consensus 587 k~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV-----------~IEAMA~GlPVV~S 655 (679)
...|+....+.+. .+|+. |..+-..++....+..||++.++- +++|=+. +.|+...|+|++.+
T Consensus 46 ~~~y~~~~~~af~-~lG~~--v~~l~~~~d~~~~l~~ad~I~v~G---Gnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~ 119 (233)
T PRK05282 46 WDDYTAKVAEALA-PLGIE--VTGIHRVADPVAAIENAEAIFVGG---GNTFQLLKQLYERGLLAPIREAVKNGTPYIGW 119 (233)
T ss_pred HHHHHHHHHHHHH-HCCCE--EEEeccchhhHHHHhcCCEEEECC---ccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEE
Confidence 3578877655555 47775 555444466778899999888877 7766544 67899999999999
Q ss_pred CCCC
Q 005746 656 QIEL 659 (679)
Q Consensus 656 ~~g~ 659 (679)
-+|.
T Consensus 120 SAGA 123 (233)
T PRK05282 120 SAGA 123 (233)
T ss_pred CHHH
Confidence 8885
No 176
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=38.09 E-value=1.6e+02 Score=35.83 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=36.5
Q ss_pred chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcC----CCEEEeCCCCC
Q 005746 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFG----VPKNISQIELS 660 (679)
Q Consensus 614 ~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~G----lPVV~S~~g~~ 660 (679)
..+...+|..||+....| +.+|..++.+|..+|. .+.|.|..-|.
T Consensus 363 ~~~l~a~~~Vaev~~v~s--~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~ 411 (732)
T KOG1050|consen 363 FLELLALYKVAEVCPVTS--WRDGMNLVFLEYILCQENKKSVLVLSEFIGD 411 (732)
T ss_pred HHHHhhhHHhhhheeecc--cccccchhhhHHHHhhcccCCceEEeeeccc
Confidence 468889999999999999 6999999999999985 45555554443
No 177
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=37.80 E-value=1.3e+02 Score=30.82 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE-EEeCCCC-CChhHHhcCCeEEEE
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSA-VVLSKRG-GLMPELARRKIKVLE 299 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~Vsa-VvLs~~G-gL~~EL~rrgIkVl~ 299 (679)
..+++++|-- .=.||+ ++.+.++.|.++|++|.. +++..++ +-.+.+...|+++..
T Consensus 117 ~g~~VlIVDD-ViTTG~--Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~s 174 (206)
T PRK13809 117 PGQTCLVIND-MVSSGK--SIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSS 174 (206)
T ss_pred CCCEEEEEEe-ccccCH--HHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEE
Confidence 4566666654 445666 677888889999988733 2222222 334455566776653
No 178
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.53 E-value=96 Score=27.44 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCcEE--ECCCc---hhHHHHHHHcCEEEEcCCCC-CCCccHHHHHHHHcCCCEEEeCCC
Q 005746 595 LEFLSQHSNLSKAML--WTPAT---TRVASLYSAADVYVINSQGL-GETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 595 L~~L~~~lnLs~~V~--ftG~~---tdVaslysAADV~VlpSq~~-~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
++.+.+..|..-.++ =-|.. ..+++.+..||++|++.... -...-.+--+|-..|+|++.+...
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 444445566643333 02222 34888999999998876521 255667778888999999999843
No 179
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=36.71 E-value=94 Score=31.31 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEE--EEEeCCCCCChhHHhcCCeEEEEc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVS--AVVLSKRGGLMPELARRKIKVLED 300 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~Vs--aVvLs~~GgL~~EL~rrgIkVl~~ 300 (679)
...||++|-.-+..|| ++.+.+..+.++|++|. ++++.+..+-.+.|.+.|+++...
T Consensus 121 ~g~rVlIVDDVitTGg---S~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~sl 179 (187)
T PRK13810 121 PEDRIVMLEDVTTSGG---SVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELVPL 179 (187)
T ss_pred CcCEEEEEEeccCCCh---HHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEEEE
Confidence 4567777766666555 45566666777999973 333444445566788889887653
No 180
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=36.09 E-value=50 Score=36.65 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 604 Ls~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
+++++.-.+.... ..++..||++|.+.- +| .|.||+.+|+|+|+-..+
T Consensus 282 ~p~n~~v~~~~p~-~~~l~~ad~vI~hGG-----~g-tt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 282 VPDNVIVADYVPQ-LELLPRADAVIHHGG-----AG-TTSEALYAGVPLVVIPDG 329 (406)
T ss_pred CCCceEEecCCCH-HHHhhhcCEEEecCC-----cc-hHHHHHHcCCCEEEecCC
Confidence 4444444444332 459999999999993 55 899999999999998776
No 181
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.87 E-value=1.2e+02 Score=33.53 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=42.3
Q ss_pred cCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhc--CCeEEEEcCCCcchhhhcCcCEEE
Q 005746 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVI 316 (679)
Q Consensus 239 ~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~r--rgIkVl~~r~~~sfk~~~kaDLVi 316 (679)
+|.+--.++| ++.||.- |.+|..|.+.|++|++.-.........+|.. .|+++........ ...++|+|+
T Consensus 2 ~~~~~~~~~v---~G~G~sG---~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~--~~~~~d~vV 73 (448)
T PRK03803 2 LMQSDGLHIV---VGLGKTG---LSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCE--LLVQASEII 73 (448)
T ss_pred ccccCCeEEE---EeecHhH---HHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChH--HhcCCCEEE
Confidence 4555444555 4566643 3489999999999876532221123345655 3887764321211 123578888
Q ss_pred Ecchh
Q 005746 317 AGSAV 321 (679)
Q Consensus 317 a~Sav 321 (679)
..+++
T Consensus 74 ~sp~i 78 (448)
T PRK03803 74 ISPGL 78 (448)
T ss_pred ECCCC
Confidence 76654
No 182
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=35.83 E-value=4.6e+02 Score=26.74 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=64.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchhH
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav~ 322 (679)
||||+|..- .||.-+..++...+-. .|++++++|..+.--- +-||-.+.-. ..+.....+|+|++.+.+-
T Consensus 1 M~ILlle~y--~ggSHk~~~~~L~~~~--~~~~~lltLP~r~w~W---RmRg~AL~~a---~~~~~~~~~dll~aTsmld 70 (168)
T PF12038_consen 1 MRILLLEPY--YGGSHKQWADGLAAHS--EHEWTLLTLPARKWHW---RMRGAALYFA---QQIPLSHSYDLLFATSMLD 70 (168)
T ss_pred CeEEEEccc--cccCHHHHHHHHHHhc--cCCEEEEEcCCCcccc---ccCCCHHHHh---hccccccCCCEEEeecccc
Confidence 578888554 5777776555332222 5888888886533100 0011110000 0011234569999988542
Q ss_pred HHHHHHHHHhcCC-CCccEEEeeehhhHHHHHHH----------HHHh--hcCCEEEEechhhHHHHHHHHH
Q 005746 323 ATWIDQYITRFPA-GGSQVVWWIMENRREYFDRA----------KLVL--DRVKLLVFLSESQTKQWLTWCE 381 (679)
Q Consensus 323 aswI~qyia~~pa-g~s~VvWwI~E~rreYfdr~----------k~vl--~rvk~LIfvSesq~k~w~~~~~ 381 (679)
+..+.+-.|. +..+.+-+.|||.-.|-.+. ..++ -.+|.++|.|+..++.+++-+.
T Consensus 71 ---La~l~gL~p~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 71 ---LATLRGLRPDLANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred ---HHHHHhhccCCCCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 1122222332 22334446799854332110 0111 1368999999999988876544
No 183
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=35.75 E-value=52 Score=36.35 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchhH
Q 005746 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (679)
Q Consensus 252 LsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav~ 322 (679)
++.||+ -|-.||..|.+.|++|++.-... .....+|...|+++... .+. .....+|+|+...++.
T Consensus 5 iGiggs--Gm~~la~~L~~~G~~v~~~D~~~-~~~~~~l~~~gi~~~~g-~~~--~~~~~~d~vV~spgi~ 69 (448)
T TIGR01082 5 VGIGGI--GMSGIAEILLNRGYQVSGSDIAE-NATTKRLEALGIPIYIG-HSA--ENLDDADVVVVSAAIK 69 (448)
T ss_pred EEECHH--HHHHHHHHHHHCCCeEEEECCCc-chHHHHHHHCcCEEeCC-CCH--HHCCCCCEEEECCCCC
Confidence 456664 23349999999999987542111 12335677789988754 221 1123589999877653
No 184
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.70 E-value=6.9e+02 Score=28.20 Aligned_cols=40 Identities=18% Similarity=-0.021 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEE
Q 005746 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (679)
Q Consensus 259 lsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~ 299 (679)
.....+..+|.+.||+|.+. .-+.|.+.+-|...|++...
T Consensus 14 hfFk~lI~elekkG~ev~iT-~rd~~~v~~LLd~ygf~~~~ 53 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLIT-CRDFGVVTELLDLYGFPYKS 53 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEE-EeecCcHHHHHHHhCCCeEe
Confidence 34678999999999999754 45567777777777877654
No 185
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=35.03 E-value=58 Score=37.05 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred cccCCc-----cchhhhcccccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcC
Q 005746 551 VSFGSG-----HLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAAD 625 (679)
Q Consensus 551 ~~~~~~-----~~~~~~~~~l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAAD 625 (679)
|||||. ..-+++...+.........+ ++...+...-...+-..+.++.. ...++..++... ..+++-..
T Consensus 288 vsfGS~~~~~~~~~~ela~gL~~~~~~flw~----~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ-~~vL~h~~ 361 (477)
T PLN02863 288 VCFGSQVVLTKEQMEALASGLEKSGVHFIWC----VKEPVNEESDYSNIPSGFEDRVA-GRGLVIRGWAPQ-VAILSHRA 361 (477)
T ss_pred EEeeceecCCHHHHHHHHHHHHhCCCcEEEE----ECCCcccccchhhCCHHHHHHhc-cCCEEecCCCCH-HHHhcCCC
Q ss_pred EEEEcCCCCCCCccHHHHHHHHcCCCEEE
Q 005746 626 VYVINSQGLGETFGRVTIEAMAFGVPKNI 654 (679)
Q Consensus 626 V~VlpSq~~~EgFGrV~IEAMA~GlPVV~ 654 (679)
|-++-+.+ =-+.++||+++|+|+|+
T Consensus 362 v~~fvtH~----G~nS~~Eal~~GvP~l~ 386 (477)
T PLN02863 362 VGAFLTHC----GWNSVLEGLVAGVPMLA 386 (477)
T ss_pred cCeEEecC----CchHHHHHHHcCCCEEe
No 186
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=33.61 E-value=1.2e+02 Score=29.85 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEE--EEEeCCCCCChhHHhcCCeEEEEc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVS--AVVLSKRGGLMPELARRKIKVLED 300 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~Vs--aVvLs~~GgL~~EL~rrgIkVl~~ 300 (679)
..+++|+|---+. ||. ++.+.+..|.++|++|. ++++.+..+-.+.+.+.|+++...
T Consensus 103 ~g~~VlIVDDvi~-TG~--T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~sl 161 (170)
T PRK13811 103 KGKRVLLVEDVTT-SGG--SALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTPL 161 (170)
T ss_pred CCCEEEEEEeccc-ccH--HHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEEE
Confidence 3567777766555 554 56677777888999983 333444435556677788888754
No 187
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.51 E-value=99 Score=34.34 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=42.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHH-HHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 241 WSRKFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmme-LAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
..++|+++ ++|| +-|. +|..|.+.|++|++.-.. ......+|.+.|+++.... .. .....+|+|+...
T Consensus 6 ~~~~v~vi----G~G~---sG~s~~a~~L~~~G~~V~~~D~~-~~~~~~~l~~~gi~~~~~~-~~--~~~~~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFV----GIGG---IGMSGLAEVLLNLGYKVSGSDLK-ESAVTQRLLELGAIIFIGH-DA--ENIKDADVVVYSS 74 (461)
T ss_pred CCCEEEEE----EEch---hhHHHHHHHHHhCCCeEEEECCC-CChHHHHHHHCCCEEeCCC-CH--HHCCCCCEEEECC
Confidence 34555444 4554 3355 788899999998764221 1123456777898886421 11 1123689999877
Q ss_pred hhH
Q 005746 320 AVC 322 (679)
Q Consensus 320 av~ 322 (679)
++.
T Consensus 75 gi~ 77 (461)
T PRK00421 75 AIP 77 (461)
T ss_pred CCC
Confidence 653
No 188
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=33.36 E-value=90 Score=32.27 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=44.2
Q ss_pred ccccccCC-cccccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEE--EEEeCCCCCChhHHhcCCeEEEEc
Q 005746 225 KRSGTCDR-KGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVS--AVVLSKRGGLMPELARRKIKVLED 300 (679)
Q Consensus 225 ~~~~~c~~-k~~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~Vs--aVvLs~~GgL~~EL~rrgIkVl~~ 300 (679)
|+.||=.. .|.+. .++|||+|-. +-.||. ++++-+..|.+.|++|. ++++.+..+..+.+.+.|+++++.
T Consensus 97 K~hG~~~~ieG~~~---~G~kVvvVED-ViTTG~--Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~~sl 169 (201)
T COG0461 97 KDHGTGGLIEGGEV---KGEKVVVVED-VITTGG--SILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKLVSL 169 (201)
T ss_pred ccCCCcceeEecCC---CCCEEEEEEe-cccCCH--hHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCceEEE
Confidence 44666422 34433 5667776654 445555 67788888999999983 333444345556677888888764
No 189
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=33.10 E-value=76 Score=31.83 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=27.3
Q ss_pred hhcCCEEEEechhhHHHHHHHHHHhhccCCCCcEEeeCCCchhh
Q 005746 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDEL 402 (679)
Q Consensus 359 l~rvk~LIfvSesq~k~w~~~~~eegi~l~sq~~VVP~gVndEl 402 (679)
+..++..|.-++-|+.++-.+. ++++.||+-|||.+.
T Consensus 133 l~~~D~~isPT~wQ~~~fP~~~-------r~kI~VihdGiDt~~ 169 (171)
T PF12000_consen 133 LEQADAGISPTRWQRSQFPAEF-------RSKISVIHDGIDTDR 169 (171)
T ss_pred HHhCCcCcCCCHHHHHhCCHHH-------HcCcEEeecccchhh
Confidence 4457888888888887765544 357899999998653
No 190
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.96 E-value=1.2e+02 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHH-HHHHHCCCeEEEEEeCC
Q 005746 243 RKFILIFHELSMTGAPLSMMELA-TELLSCGATVSAVVLSK 282 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLA-teL~s~G~~VsaVvLs~ 282 (679)
|||++|..+....|--..+++.+ ..|.+.|++|.++-+..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 69999999998888877776654 55566799999887654
No 191
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.60 E-value=1.5e+02 Score=32.39 Aligned_cols=61 Identities=21% Similarity=0.114 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCC--CCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcchh
Q 005746 260 SMMELATELLSCGATVSAVVLSKR--GGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (679)
Q Consensus 260 smmeLAteL~s~G~~VsaVvLs~~--GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~Sav 321 (679)
.-+..|..|++.|++|++.-.... .....+|...|+++.......... ...+|+|+...++
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~d~vV~s~gi 78 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELL-DEDFDLMVKNPGI 78 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHh-cCcCCEEEECCCC
Confidence 555669999999999876532111 123356777788886532221111 1137888877643
No 192
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=32.01 E-value=73 Score=35.28 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=47.7
Q ss_pred ccccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC-CC-hhHHhc--CCeEEEEcCCCc---ch
Q 005746 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GL-MPELAR--RKIKVLEDRGEP---SF 306 (679)
Q Consensus 234 ~~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G-gL-~~EL~r--rgIkVl~~r~~~---sf 306 (679)
.++......+|++++. .+-....|++.|.++|.+|..+...... .+ .+++.. .+..|+++.... ..
T Consensus 266 ~~~~~~l~Gkrv~i~g-------d~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~ 338 (407)
T TIGR01279 266 EPHTQLLRGKKIFFFG-------DNLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQR 338 (407)
T ss_pred HHHHHhcCCCEEEEEC-------CchHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHH
Confidence 3455556677877652 2457788999999999999766533221 12 222221 245666553322 22
Q ss_pred hhhcCcCEEEEcch
Q 005746 307 KTSMKADLVIAGSA 320 (679)
Q Consensus 307 k~~~kaDLVia~Sa 320 (679)
-...++||+|.|+.
T Consensus 339 i~~~~pDllig~~~ 352 (407)
T TIGR01279 339 IRATRPDLVVTGLG 352 (407)
T ss_pred HHhcCCCEEecCcc
Confidence 24468999999983
No 193
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=31.95 E-value=83 Score=33.57 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=41.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC-----------CChhHHhcCCeEEEEcCC--Ccc---h
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRG--EPS---F 306 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G-----------gL~~EL~rrgIkVl~~r~--~~s---f 306 (679)
|||+++ |.+.......++|.+.|+++..|+...+. .+.+...+.+|+++.... +.. .
T Consensus 1 mkIvf~-------G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFM-------GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAE 73 (309)
T ss_pred CEEEEE-------CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHH
Confidence 477776 33445567777888889999877653321 123445567999875322 111 2
Q ss_pred hhhcCcCEEEEc
Q 005746 307 KTSMKADLVIAG 318 (679)
Q Consensus 307 k~~~kaDLVia~ 318 (679)
....++|+++.-
T Consensus 74 l~~~~~Dliv~~ 85 (309)
T PRK00005 74 LAALNADVIVVV 85 (309)
T ss_pred HHhcCcCEEEEe
Confidence 235689998763
No 194
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.41 E-value=2.1e+02 Score=31.62 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhc--CCeEEEEcCCCcchhhhcCcCEEEEcchh
Q 005746 260 SMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (679)
Q Consensus 260 smmeLAteL~s~G~~VsaVvLs~~GgL~~EL~r--rgIkVl~~r~~~sfk~~~kaDLVia~Sav 321 (679)
+-|..|..|.+.|++|++.-.........+|.. .|+++........ ....+|+|+..+++
T Consensus 16 ~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~--~~~~~d~vv~spgi 77 (445)
T PRK04308 16 TGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA--LDNGFDILALSPGI 77 (445)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH--HHhCCCEEEECCCC
Confidence 445568899999999876543222123345654 4887765432211 12367999887654
No 195
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=31.20 E-value=1e+02 Score=26.63 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVv 279 (679)
+-+|+|+|.+. .-....-++|..|.+.|+.|.+.-
T Consensus 16 k~~v~i~HG~~--eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFG--EHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46899999873 333468899999999999987653
No 196
>PHA02518 ParA-like protein; Provisional
Probab=31.19 E-value=1.6e+02 Score=28.21 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=36.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL 290 (679)
|++-|...-+-.|-......||.+|.+.|+.|.++-+...+.+...+
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~ 47 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWA 47 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHH
Confidence 46667777666788888999999999999999988877666655544
No 197
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.47 E-value=1.2e+02 Score=27.31 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=46.4
Q ss_pred eCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCC
Q 005746 581 VGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIEL 659 (679)
Q Consensus 581 VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~ 659 (679)
.|.|.. ...+-.-+++.++..|++-.|.-.+ ..++.+.+..+|++++..| ...-+..+--.+-..|+||+.-+...
T Consensus 10 C~~G~s-SS~l~~k~~~~~~~~gi~~~v~a~~-~~~~~~~~~~~Dvill~pq-i~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 10 CAAGMS-TSLLVNKMNKAAEEYGVPVKIAAGS-YGAAGEKLDDADVVLLAPQ-VAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred CCCchh-HHHHHHHHHHHHHHCCCcEEEEEec-HHHHHhhcCCCCEEEECch-HHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 455433 2344456666777788875554444 3457777889999999998 23333333333344577999866543
No 198
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=30.42 E-value=1e+02 Score=30.12 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHCCCeEEEEE
Q 005746 260 SMMELATELLSCGATVSAVV 279 (679)
Q Consensus 260 smmeLAteL~s~G~~VsaVv 279 (679)
.-..+|.+|++.|++|.++.
T Consensus 17 IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 17 LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEc
Confidence 45688999999999987664
No 199
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=29.96 E-value=71 Score=30.54 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=31.2
Q ss_pred chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCC
Q 005746 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQI 657 (679)
Q Consensus 614 ~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~ 657 (679)
..++..+|+.||++|-..- - ..|=|+++|+|+|+-..
T Consensus 248 ~~~~~~~~~~~~~~Is~Rl-----H--~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 248 PDELLELISQADLVISMRL-----H--GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHHhcCCEEEecCC-----H--HHHHHHHcCCCEEEEec
Confidence 5789999999999998884 2 57789999999998653
No 200
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=29.84 E-value=67 Score=36.73 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=34.2
Q ss_pred CCCCcEEECCCchhHHHHH--HHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCC
Q 005746 603 NLSKAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 603 nLs~~V~ftG~~tdVasly--sAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g 658 (679)
+++++|+..++-.. .+++ ..+|+||.-.- . ..+.||+.+|+|+|+-...
T Consensus 343 ~~p~Nv~i~~w~Pq-~~lL~hp~v~~fItHGG-----~-~s~~Eal~~GvP~v~iP~~ 393 (507)
T PHA03392 343 NLPANVLTQKWFPQ-RAVLKHKNVKAFVTQGG-----V-QSTDEAIDALVPMVGLPMM 393 (507)
T ss_pred cCCCceEEecCCCH-HHHhcCCCCCEEEecCC-----c-ccHHHHHHcCCCEEECCCC
Confidence 35566665555432 4566 55888887662 3 4899999999999997654
No 201
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.67 E-value=1.7e+02 Score=28.44 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg 285 (679)
..+|++.|+..-+-.|.......||..|+..|+.|.+|-+...++
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 347888887777777888899999999999999998876554443
No 202
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.45 E-value=99 Score=29.22 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=31.5
Q ss_pred CeEEEEeCCCCCCCH-HHHHHHHHHHHHHCCCeE-EEEEeCCCC
Q 005746 243 RKFILIFHELSMTGA-PLSMMELATELLSCGATV-SAVVLSKRG 284 (679)
Q Consensus 243 rKILlI~heLsmgGA-plsmmeLAteL~s~G~~V-saVvLs~~G 284 (679)
||+++|++.-..++. .+..+++|..+...||+| .++ +..+|
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vF-f~~Dg 43 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVF-FYQDG 43 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEE-EehHH
Confidence 689999999887544 477999999999999995 554 44334
No 203
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.22 E-value=84 Score=34.97 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=47.1
Q ss_pred cccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCC-CC-hhHHhc--CCeEEEEcCCCc---ch
Q 005746 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRG-GL-MPELAR--RKIKVLEDRGEP---SF 306 (679)
Q Consensus 235 ~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s-~G~~VsaVvLs~~G-gL-~~EL~r--rgIkVl~~r~~~---sf 306 (679)
++......+|+++. |.+-....++..|.+ +|.+|..+...... .+ .+++.. .++.|+++.... ..
T Consensus 283 ~~~~~l~Gkrvai~-------g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~ 355 (427)
T PRK02842 283 PYRELLRGKRVFFL-------PDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDR 355 (427)
T ss_pred HhhhhcCCcEEEEE-------CCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHH
Confidence 34445567787664 233467788999998 99999766533221 12 222322 366676653221 22
Q ss_pred hhhcCcCEEEEcchh
Q 005746 307 KTSMKADLVIAGSAV 321 (679)
Q Consensus 307 k~~~kaDLVia~Sav 321 (679)
-...++|++|+|+..
T Consensus 356 i~~~~pDllig~~~~ 370 (427)
T PRK02842 356 IRALRPDLVVCGLGL 370 (427)
T ss_pred HHHcCCCEEEccCcc
Confidence 234689999999843
No 204
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.11 E-value=2.2e+02 Score=24.06 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=35.9
Q ss_pred eCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCC
Q 005746 581 VGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQ 632 (679)
Q Consensus 581 VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq 632 (679)
.|+|..-.-.++..++...++.|++-.+.-.. ......+...+|++++..+
T Consensus 6 C~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 6 CGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp ESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred CCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 45554444556577888888888776665555 6677777778999999997
No 205
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=28.35 E-value=1.6e+02 Score=29.35 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEE-EEE-eCCCCCChhHHhcCCeEEEEc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVS-AVV-LSKRGGLMPELARRKIKVLED 300 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~Vs-aVv-Ls~~GgL~~EL~rrgIkVl~~ 300 (679)
..+++|+|---+. ||. ++.+.+..|.++|++|. +++ +.+..+-.+.+...|+++...
T Consensus 106 ~g~~VlIVDDvit-TG~--Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL 164 (176)
T PRK13812 106 EGEEVVVLEDIAT-TGQ--SAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEAL 164 (176)
T ss_pred CcCEEEEEEEeeC-CCH--HHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEE
Confidence 3467777766665 555 56788888889999863 333 344334456677788887653
No 206
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.40 E-value=1.3e+02 Score=29.37 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHCCCeEEEEE
Q 005746 260 SMMELATELLSCGATVSAVV 279 (679)
Q Consensus 260 smmeLAteL~s~G~~VsaVv 279 (679)
.-.++|..|+++|++|.++.
T Consensus 16 iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 45689999999999987654
No 207
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=27.19 E-value=1.1e+02 Score=29.81 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg 285 (679)
+...|+|+|+. .|-.-.+.++|..|+++|+.|.+.-+-.+.+
T Consensus 13 ~~~~Vvv~~d~--~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~ 54 (218)
T PF01738_consen 13 PRPAVVVIHDI--FGLNPNIRDLADRLAEEGYVVLAPDLFGGRG 54 (218)
T ss_dssp SEEEEEEE-BT--TBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS
T ss_pred CCCEEEEEcCC--CCCchHHHHHHHHHHhcCCCEEecccccCCC
Confidence 34678888884 5666788899999999999987765544333
No 208
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=26.78 E-value=1.8e+02 Score=29.96 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=37.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL 290 (679)
||++.|+..=|--|-....+.||.+|.+.|..|.++-+...+.+...+
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWK 48 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHH
Confidence 467888777766777788999999999999999888776655555444
No 209
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=26.62 E-value=2.3e+02 Score=29.93 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCCCcEEECCC-chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHH-cCCCEEEeCC
Q 005746 594 ILEFLSQHSNLSKAMLWTPA-TTRVASLYSAADVYVINSQGLGETFGRVTIEAMA-FGVPKNISQI 657 (679)
Q Consensus 594 ~L~~L~~~lnLs~~V~ftG~-~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA-~GlPVV~S~~ 657 (679)
+|.+..++.|++ +.=+++ ...+..+...+|++-++| .+..-..++++.| .|+||+.+.-
T Consensus 80 ~l~~~~~~~Gl~--~~t~~~d~~~~~~l~~~~d~lkI~s---~~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 80 LLRRAADEHGLP--VVTEVMDPRDVEIVAEYADILQIGA---RNMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHhCCC--EEEeeCChhhHHHHHhhCCEEEECc---ccccCHHHHHHHhcCCCcEEEeCC
Confidence 366677778886 444555 345556667799999999 5666666777766 6999999875
No 210
>PRK07890 short chain dehydrogenase; Provisional
Probab=25.63 E-value=1.2e+02 Score=29.62 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCCeEEEEE
Q 005746 260 SMMELATELLSCGATVSAVV 279 (679)
Q Consensus 260 smmeLAteL~s~G~~VsaVv 279 (679)
.-..+|..|+++|++|.++.
T Consensus 17 IG~~la~~l~~~G~~V~~~~ 36 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAA 36 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEe
Confidence 45588899999999987654
No 211
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=25.51 E-value=5.2e+02 Score=27.63 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=47.5
Q ss_pred eeeccCCcchhhhccccccccccccCCcccccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC
Q 005746 206 LLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (679)
Q Consensus 206 ~~~gp~~~~e~~~l~~s~~~~~~~c~~k~~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg 285 (679)
..+||.-........|.+.. ..+++|+|.-.-.....+..+-+++..|.+.+..+.+.+ ..+.
T Consensus 203 ~~~Gp~~~~~~~~~~~~~~~---------------~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~--g~~~ 265 (392)
T TIGR01426 203 TFVGPCIGDRKEDGSWERPG---------------DGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSV--GRGV 265 (392)
T ss_pred EEECCCCCCccccCCCCCCC---------------CCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEE--CCCC
Confidence 36788543333334466531 234566663322223444455667888888888765443 2222
Q ss_pred ChhHHh--cCCeEEEEcCCCcchhhhcCcCEEEEcch
Q 005746 286 LMPELA--RRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (679)
Q Consensus 286 L~~EL~--rrgIkVl~~r~~~sfk~~~kaDLVia~Sa 320 (679)
-...+. ..++.+...-.. ......+|++|.|+.
T Consensus 266 ~~~~~~~~~~~v~~~~~~p~--~~ll~~~~~~I~hgG 300 (392)
T TIGR01426 266 DPADLGELPPNVEVRQWVPQ--LEILKKADAFITHGG 300 (392)
T ss_pred ChhHhccCCCCeEEeCCCCH--HHHHhhCCEEEECCC
Confidence 122222 234544432111 122346899988865
No 212
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=25.31 E-value=1.9e+02 Score=33.83 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=40.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC--------CChhHHhcCCeEEEEcCCC--c---chhhh
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGE--P---SFKTS 309 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G--------gL~~EL~rrgIkVl~~r~~--~---sfk~~ 309 (679)
|||+++ |.+-......++|.+.|++|.+|+...+. .+.....+.||+|+..... . .....
T Consensus 1 mkivf~-------g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T PRK08125 1 MKAVVF-------AYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRE 73 (660)
T ss_pred CeEEEE-------CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHh
Confidence 467765 34444455556788899999866643322 1223345679999853221 1 12234
Q ss_pred cCcCEEEEc
Q 005746 310 MKADLVIAG 318 (679)
Q Consensus 310 ~kaDLVia~ 318 (679)
.++|+++.-
T Consensus 74 ~~~D~iv~~ 82 (660)
T PRK08125 74 LAPDVIFSF 82 (660)
T ss_pred cCCCEEEEc
Confidence 689998753
No 213
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=25.00 E-value=99 Score=26.78 Aligned_cols=54 Identities=28% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEE--EcC---CCc---chhhhcCcCEEEEcc
Q 005746 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDR---GEP---SFKTSMKADLVIAGS 319 (679)
Q Consensus 261 mmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl--~~r---~~~---sfk~~~kaDLVia~S 319 (679)
++++|+.|.+.|+++.+- +|-...|++.|+++- ..+ +.+ ..-...++|+||...
T Consensus 2 ~~~~~~~l~~lG~~i~AT-----~gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 2 LVELAKRLAELGFELVAT-----GGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHHHCCCEEEEc-----cHHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 568999999999997542 345677888898762 211 111 112345788887643
No 214
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=24.96 E-value=1.3e+02 Score=34.54 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCCCCCCHH-HHHHHHHHHHHHCCCeEEEEEe
Q 005746 241 WSRKFILIFHELSMTGAP-LSMMELATELLSCGATVSAVVL 280 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAp-lsmmeLAteL~s~G~~VsaVvL 280 (679)
.+-|||.+++. +++.- ..+-.++++|+++||+|+++..
T Consensus 19 ~~~kIl~~~P~--~~~SH~~~~~~l~~~La~rGH~VTvi~p 57 (507)
T PHA03392 19 RAARILAVFPT--PAYSHHSVFKVYVEALAERGHNVTVIKP 57 (507)
T ss_pred CcccEEEEcCC--CCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34567777655 34443 5677899999999999998864
No 215
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=24.91 E-value=2.8e+02 Score=27.45 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=41.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHH-HHHHHHH-CCCeEEEEEeCCCCCChhHHh-cCCeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 243 RKFILIFHELSMTGAPLSMME-LATELLS-CGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmme-LAteL~s-~G~~VsaVvLs~~GgL~~EL~-rrgIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
+||++|.++. +|.-..|.+ ++..+.+ .|++|.++.+... +..++. ..+.................+|.|+.++
T Consensus 2 ~kilIvy~S~--~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 77 (200)
T PRK03767 2 AKVLVLYYSM--YGHIETMAEAVAEGAREVAGAEVTIKRVPET--VPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGT 77 (200)
T ss_pred CeEEEEEcCC--CCHHHHHHHHHHHHHhhcCCcEEEEEecccc--CCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEe
Confidence 3799998875 676655555 5666766 8999988877532 223222 2221110000001133445789888877
Q ss_pred h
Q 005746 320 A 320 (679)
Q Consensus 320 a 320 (679)
.
T Consensus 78 P 78 (200)
T PRK03767 78 P 78 (200)
T ss_pred c
Confidence 4
No 216
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=24.90 E-value=24 Score=40.80 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=40.9
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCC
Q 005746 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELS 660 (679)
Q Consensus 615 tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~ 660 (679)
-|..++...|-+-|+|| ++|+.|-+-.|.-.+|+|-|.|+..|-
T Consensus 492 lDYeeFVRGCHLGVFPS--YYEPWGYTPAECTVMGiPSvtTNlSGF 535 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPS--YYEPWGYTPAECTVMGIPSVTTNLSGF 535 (692)
T ss_pred CCHHHHhcccccccccc--ccCCCCCCchheEEeccccccccccch
Confidence 37889999999999999 699999999999999999999998874
No 217
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.24 E-value=1.9e+02 Score=28.62 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=34.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg 285 (679)
+|++.|+..-+-.|-....+.||..|++.|..|.++-+...+.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~ 43 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL 43 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch
Confidence 4677777777777888889999999999999998887665443
No 218
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=23.99 E-value=1.7e+02 Score=33.63 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=49.4
Q ss_pred CCcccccccCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCC-CChhH----Hhc-------CCeEEE
Q 005746 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPE----LAR-------RKIKVL 298 (679)
Q Consensus 231 ~~k~~f~~~~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~G-gL~~E----L~r-------rgIkVl 298 (679)
|.=.++......+|+. + .|.|-..+.|++.|.++|.+|..+...... .+++. +.. .+..++
T Consensus 303 dal~d~~~~L~GKrva-i------~Gdp~~~i~LarfL~elGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~viv 375 (457)
T CHL00073 303 ESLKDYLDLVRGKSVF-F------MGDNLLEISLARFLIRCGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIV 375 (457)
T ss_pred HHHHHHHHHHCCCEEE-E------ECCCcHHHHHHHHHHHCCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEE
Confidence 3445566667788886 3 345567788999999999999877544322 22222 322 233445
Q ss_pred EcCCCc---chhhhcCcCEEEEcc
Q 005746 299 EDRGEP---SFKTSMKADLVIAGS 319 (679)
Q Consensus 299 ~~r~~~---sfk~~~kaDLVia~S 319 (679)
++.... .+-...++||+|+|-
T Consensus 376 e~~D~~el~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 376 EKPDNYNQIQRIRELQPDLAITGM 399 (457)
T ss_pred eCCCHHHHHHHHhhCCCCEEEccc
Confidence 543221 122446899999884
No 219
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=23.88 E-value=1.7e+02 Score=30.76 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=22.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS 281 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs 281 (679)
|||-+|.- +|. .--+++.|..++||+|++++-+
T Consensus 1 mKIaiIgA----sG~--~Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGA----SGK--AGSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEec----Cch--hHHHHHHHHHhCCCeeEEEEeC
Confidence 46666532 232 3347888999999999999843
No 220
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=23.51 E-value=31 Score=31.41 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=43.9
Q ss_pred eeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccH
Q 005746 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGR 640 (679)
Q Consensus 580 ~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGr 640 (679)
..|.|.+-.--++..++...+++|++-.+- .=..+.+..+...||+||.... +.+.|+.
T Consensus 7 aCG~GvgSS~~ik~kve~~l~~~gi~~~~~-~~~v~~~~~~~~~aDiiv~s~~-l~~~~~~ 65 (93)
T COG3414 7 ACGNGVGSSTMIKMKVEEVLKELGIDVDVE-QCAVDEIKALTDGADIIVTSTK-LADEFED 65 (93)
T ss_pred ECCCCccHHHHHHHHHHHHHHHcCCCceee-eEEecccccCCCcccEEEEehH-hhhhcCc
Confidence 467776667778888888889999973332 2235778888999999999887 6666744
No 221
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=23.39 E-value=66 Score=33.34 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=38.1
Q ss_pred chhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 614 ~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
.+++..++..+||++.-|. .+..--.+..|+..|+|||+...|.+.+
T Consensus 51 ~~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG~s~~ 97 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTGFTEE 97 (257)
T ss_pred cCCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 4677888878999997775 7887788999999999999887666544
No 222
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=23.30 E-value=3.1e+02 Score=26.22 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=44.5
Q ss_pred cccccccCC-CCeEEEEeCCCCCC----CHHHHHHHHHHHHHHCCCeEEEEEeCC--CCCChhHHhcCCe
Q 005746 233 KGDFARFVW-SRKFILIFHELSMT----GAPLSMMELATELLSCGATVSAVVLSK--RGGLMPELARRKI 295 (679)
Q Consensus 233 k~~f~~~~~-~rKILlI~heLsmg----GAplsmmeLAteL~s~G~~VsaVvLs~--~GgL~~EL~rrgI 295 (679)
-.+++.|.+ .|.|++.|..-..- -..+.+.+|+..|.+.|++|.++.... +-|+-+.|...|-
T Consensus 58 ~p~L~~~~~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KGiDD~l~~~G~ 127 (130)
T PF12965_consen 58 IPELAKLAKPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKGIDDLLAAKGP 127 (130)
T ss_pred chhHHHhccCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCCHhHHHHhcCc
Confidence 456677764 47788887765322 334678999999999999999988773 2267777766654
No 223
>PRK06194 hypothetical protein; Provisional
Probab=23.28 E-value=2.2e+02 Score=28.68 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEE
Q 005746 259 LSMMELATELLSCGATVSAVV 279 (679)
Q Consensus 259 lsmmeLAteL~s~G~~VsaVv 279 (679)
-.-.+||.+|+++|++|.++.
T Consensus 17 gIG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 17 GFGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 345578899999999987653
No 224
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=22.90 E-value=3.4e+02 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=35.4
Q ss_pred EEEEeCCCCCC-CHHHHHHHHHHHHHHC--CCeEEEEEeCCCCCCh----hHHhcCCe
Q 005746 245 FILIFHELSMT-GAPLSMMELATELLSC--GATVSAVVLSKRGGLM----PELARRKI 295 (679)
Q Consensus 245 ILlI~heLsmg-GAplsmmeLAteL~s~--G~~VsaVvLs~~GgL~----~EL~rrgI 295 (679)
+|++.|..... .....+.+++..|.+. +..|.+..++...+.. +++.+.|+
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~ 59 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGY 59 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 78999999876 7777889999999765 4677766666523333 34555554
No 225
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=22.88 E-value=3.4e+02 Score=31.01 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=42.1
Q ss_pred CcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeCCCCCcc
Q 005746 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQIELSRK 662 (679)
Q Consensus 606 ~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~~g~~r~ 662 (679)
.+|....++.|+.+|+.+||..|--+- | +++.|=+.+|+|.++-....-|+
T Consensus 277 p~i~I~~f~~~~~~ll~gA~~vVSm~G-----Y-NTvCeILs~~k~aLivPr~~p~e 327 (400)
T COG4671 277 PHISIFEFRNDFESLLAGARLVVSMGG-----Y-NTVCEILSFGKPALIVPRAAPRE 327 (400)
T ss_pred CCeEEEEhhhhHHHHHHhhheeeeccc-----c-hhhhHHHhCCCceEEeccCCCcH
Confidence 678888899999999999999997773 2 68999999999998866554443
No 226
>PRK05569 flavodoxin; Provisional
Probab=22.86 E-value=2.7e+02 Score=25.54 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCCCHHHHHH-HHHHHHHHCCCeEEEEEeC
Q 005746 244 KFILIFHELSMTGAPLSMM-ELATELLSCGATVSAVVLS 281 (679)
Q Consensus 244 KILlI~heLsmgGAplsmm-eLAteL~s~G~~VsaVvLs 281 (679)
|++++.++ ++|.-..|. .++..+.+.|++|.+.-+.
T Consensus 3 ki~iiY~S--~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 3 KVSIIYWS--CGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred eEEEEEEC--CCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67777766 577755544 4677788899988766443
No 227
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.69 E-value=2.6e+02 Score=31.60 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=39.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH---hc-CCeEEEEcCCCcchhhhcCcCEEE
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL---AR-RKIKVLEDRGEPSFKTSMKADLVI 316 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL---~r-rgIkVl~~r~~~sfk~~~kaDLVi 316 (679)
..+++|+| ||+....-. +..|+++|+.|+||... +.+++ .. .+|+.+...... .....+++|+
T Consensus 11 ~~~~vlvv------GgG~vA~rk-~~~ll~~ga~v~visp~----~~~~~~~l~~~~~i~~~~~~~~~--~dl~~~~lv~ 77 (457)
T PRK10637 11 RDRDCLLV------GGGDVAERK-ARLLLDAGARLTVNALA----FIPQFTAWADAGMLTLVEGPFDE--SLLDTCWLAI 77 (457)
T ss_pred CCCEEEEE------CCCHHHHHH-HHHHHHCCCEEEEEcCC----CCHHHHHHHhCCCEEEEeCCCCh--HHhCCCEEEE
Confidence 45788887 666554444 45688899999887532 33443 23 356665533221 2234678998
Q ss_pred Ecc
Q 005746 317 AGS 319 (679)
Q Consensus 317 a~S 319 (679)
+.+
T Consensus 78 ~at 80 (457)
T PRK10637 78 AAT 80 (457)
T ss_pred ECC
Confidence 765
No 228
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.68 E-value=2.3e+02 Score=27.10 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=39.6
Q ss_pred hcCcCEEEEcchhHHHH-HHHHHHhcCCCCccEEEeeehhhH-HHHHHHHHHhhcCCEEEEechhhHHHHHHHHHHhhcc
Q 005746 309 SMKADLVIAGSAVCATW-IDQYITRFPAGGSQVVWWIMENRR-EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK 386 (679)
Q Consensus 309 ~~kaDLVia~Sav~asw-I~qyia~~pag~s~VvWwI~E~rr-eYfdr~k~vl~rvk~LIfvSesq~k~w~~~~~eegi~ 386 (679)
..+||+||+.-.+++.- +..+-..-.....++++.+.+... + .--+-..+|..+..|+..+++ +.+.|++
T Consensus 87 ~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H----~~W~~~~~D~y~Vase~~~~~----l~~~Gi~ 158 (169)
T PF06925_consen 87 EFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVH----PFWIHPGVDRYFVASEEVKEE----LIERGIP 158 (169)
T ss_pred hcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCC----cCeecCCCCEEEECCHHHHHH----HHHcCCC
Confidence 46899999887776554 443322221213445566655421 1 011235688888889988877 3345554
No 229
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.42 E-value=1.3e+02 Score=33.96 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=39.4
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcC--CeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR--KIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rr--gIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
.++|+++ +.||.- |.+|..|.+.|++|++.-.........+|... ++++........ ....+|+|+..+
T Consensus 7 ~~~i~v~----G~G~sG---~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~--~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVL----GLGESG---LAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPA--LLDGVDLVALSP 77 (498)
T ss_pred CCEEEEE----eecHhH---HHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchh--HhcCCCEEEECC
Confidence 3455444 556554 34888999999998764321111123456555 455543221211 123689999876
Q ss_pred hh
Q 005746 320 AV 321 (679)
Q Consensus 320 av 321 (679)
++
T Consensus 78 ~I 79 (498)
T PRK02006 78 GL 79 (498)
T ss_pred CC
Confidence 54
No 230
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=22.37 E-value=2.1e+02 Score=30.29 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCe
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKI 295 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgI 295 (679)
|+.-|-+-| +..|+.. .+.++...|.+.|+.|.++|..-+++-..-..+.||
T Consensus 181 WKQpi~~~f-~t~m~~~--~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 181 WKQPIYFDF-DTSMDAD--ILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred CCccEEEEe-cCcCCHH--HHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCC
Confidence 555566666 3466643 457899999999999999885544443333344454
No 231
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=22.35 E-value=41 Score=34.86 Aligned_cols=92 Identities=11% Similarity=-0.008 Sum_probs=48.0
Q ss_pred ccccccceEEEEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHH----HcCEEEEcCC-CCCCCccH
Q 005746 566 SDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS----AADVYVINSQ-GLGETFGR 640 (679)
Q Consensus 566 l~~~~~~a~lvLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslys----AADV~VlpSq-~~~EgFGr 640 (679)
+..-.|+++.+.+ ...+.........+.++..++.+|+.-........+++...+. ..|+++++.- .....+..
T Consensus 124 ~~~l~P~~k~igv-l~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~ 202 (294)
T PF04392_consen 124 IKKLFPDAKRIGV-LYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEA 202 (294)
T ss_dssp HHHHSTT--EEEE-EEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHH
T ss_pred HHHhCCCCCEEEE-EecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHH
Confidence 3344455566632 1222211122344556666777888655455666677776666 4587766652 22344555
Q ss_pred HHHHHHHcCCCEEEeCCC
Q 005746 641 VTIEAMAFGVPKNISQIE 658 (679)
Q Consensus 641 V~IEAMA~GlPVV~S~~g 658 (679)
++..|..+++||+++.-.
T Consensus 203 i~~~~~~~~iPv~~~~~~ 220 (294)
T PF04392_consen 203 ILQLANEAKIPVFGSSDF 220 (294)
T ss_dssp HHHHCCCTT--EEESSHH
T ss_pred HHHHHHhcCCCEEECCHH
Confidence 677788899999997643
No 232
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=22.35 E-value=1.9e+02 Score=29.80 Aligned_cols=65 Identities=32% Similarity=0.395 Sum_probs=36.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHH----hcCCeEEEEcCCCcchhhhcCcCEEEE
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL----ARRKIKVLEDRGEPSFKTSMKADLVIA 317 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL----~rrgIkVl~~r~~~sfk~~~kaDLVia 317 (679)
++++|+| ||+.. ...=|..|+++|++|+++...- .+++ .+.+|+.+....+. .....+++|++
T Consensus 12 ~k~Vlvv------GgG~v-a~rKa~~ll~~ga~v~Vvs~~~----~~el~~~~~~~~i~~~~~~~~~--~~~~~~~lvia 78 (210)
T COG1648 12 GKKVLVV------GGGSV-ALRKARLLLKAGADVTVVSPEF----EPELKALIEEGKIKWIEREFDA--EDLDDAFLVIA 78 (210)
T ss_pred CCEEEEE------CCCHH-HHHHHHHHHhcCCEEEEEcCCc----cHHHHHHHHhcCcchhhcccCh--hhhcCceEEEE
Confidence 4677777 44432 3345677899999999886443 3443 33455555422221 12223788876
Q ss_pred cc
Q 005746 318 GS 319 (679)
Q Consensus 318 ~S 319 (679)
-+
T Consensus 79 At 80 (210)
T COG1648 79 AT 80 (210)
T ss_pred eC
Confidence 54
No 233
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=22.23 E-value=1.1e+02 Score=33.22 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=45.8
Q ss_pred cccccccCC-CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC
Q 005746 233 KGDFARFVW-SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (679)
Q Consensus 233 k~~f~~~~~-~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg 285 (679)
+|+|++.+. +.-|+.|..+++.-=.|..+++++.+|.+.|+.++.++|..+.|
T Consensus 60 ~Gt~~e~Pl~g~eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~L~~G~G 113 (268)
T PF04609_consen 60 RGTISEAPLAGTEVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIGLARGSG 113 (268)
T ss_pred ccEEEEccCCCCcEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEEEeccCC
Confidence 578888743 46799999999999999999999999999999999999987544
No 234
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.17 E-value=41 Score=31.66 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHhheeE
Q 005746 67 RLVYWLLLITLWTYLGFYV 85 (679)
Q Consensus 67 r~~~w~~l~~lw~~l~f~v 85 (679)
-.++|+||+.-|+..+.|+
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~ 101 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYI 101 (103)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4689999999998766664
No 235
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=21.95 E-value=2.5e+02 Score=25.02 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEcCCCcchhhhcCcCEEEEcc
Q 005746 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (679)
Q Consensus 241 ~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~r~~~sfk~~~kaDLVia~S 319 (679)
.++++|+| ||++. ...=++.|++.|++|+++...- +..+..+++.....+ .....+|+|++.+
T Consensus 6 ~~~~vlVv------GgG~v-a~~k~~~Ll~~gA~v~vis~~~------~~~~~~i~~~~~~~~---~~l~~~~lV~~at 68 (103)
T PF13241_consen 6 KGKRVLVV------GGGPV-AARKARLLLEAGAKVTVISPEI------EFSEGLIQLIRREFE---EDLDGADLVFAAT 68 (103)
T ss_dssp TT-EEEEE------EESHH-HHHHHHHHCCCTBEEEEEESSE------HHHHTSCEEEESS-G---GGCTTESEEEE-S
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHhCCCEEEEECCch------hhhhhHHHHHhhhHH---HHHhhheEEEecC
Confidence 35677777 44443 3456677999999999875331 223356666544321 2234688998765
No 236
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=21.87 E-value=1e+02 Score=33.86 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC---CCChhHHhcCCeEEEEcC
Q 005746 250 HELSMTGAPLSMMELATELLSCGATVSAVVLSKR---GGLMPELARRKIKVLEDR 301 (679)
Q Consensus 250 heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~---GgL~~EL~rrgIkVl~~r 301 (679)
-|..+||| .+|-++++.||+|.+.-.+.. ..+++.+...|++|..+.
T Consensus 27 gE~PyGGa-----~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD 76 (340)
T COG4007 27 GEPPYGGA-----RMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDD 76 (340)
T ss_pred CCCCCCch-----HHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCc
Confidence 35667777 677889999999865433221 124556788999999874
No 237
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.85 E-value=2.6e+02 Score=28.65 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhc--CCeEEEEcCC-Ccch-hh--hcCcCEEEEcc
Q 005746 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRG-EPSF-KT--SMKADLVIAGS 319 (679)
Q Consensus 256 GAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~r--rgIkVl~~r~-~~sf-k~--~~kaDLVia~S 319 (679)
|+-+.-..+|+.|.+.||+|.++- .......+... ....++...+ +... +. ..++|.+++-+
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id--~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLID--RDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEE--cCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 555677899999999999998764 33344444333 5666665433 2222 21 35789998754
No 238
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.84 E-value=2.7e+02 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=35.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEEc
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED 300 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~~ 300 (679)
-++++ .|..|-...+++.++...++|+.|.+++ ..+.+.+.-.+.++.+++.
T Consensus 45 dl~I~---iS~SG~t~e~i~~~~~a~~~g~~iI~IT--~~~~l~~~~~~~~~~~~~~ 96 (119)
T cd05017 45 TLVIA---VSYSGNTEETLSAVEQAKERGAKIVAIT--SGGKLLEMAREHGVPVIII 96 (119)
T ss_pred CEEEE---EECCCCCHHHHHHHHHHHHCCCEEEEEe--CCchHHHHHHHcCCcEEEC
Confidence 36666 4567777788888888889999987766 3455555444467677654
No 239
>PRK04148 hypothetical protein; Provisional
Probab=21.80 E-value=1.8e+02 Score=28.30 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=42.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHhcCCeEEEE-cCCCcchhhhcCcCEEEE
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE-DRGEPSFKTSMKADLVIA 317 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~rrgIkVl~-~r~~~sfk~~~kaDLVia 317 (679)
+||+-|.-. .| .++|..|.+.|++|.++-.+. ...+.....++.++. |-.+..+.....+|+|.+
T Consensus 18 ~kileIG~G---fG-----~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 18 KKIVELGIG---FY-----FKVAKKLKESGFDVIVIDINE--KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred CEEEEEEec---CC-----HHHHHHHHHCCCEEEEEECCH--HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 567766322 23 356778889999998886543 235556667777665 445566666778888865
No 240
>PRK13054 lipid kinase; Reviewed
Probab=21.58 E-value=2.7e+02 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChhHHh
Q 005746 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA 291 (679)
Q Consensus 240 ~~~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~EL~ 291 (679)
|+-+|+++|.+.- +|+....-++...|.+.|+++.+......+. ..++.
T Consensus 1 ~~~~~~~~i~N~~--~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~-a~~~a 49 (300)
T PRK13054 1 MTFPKSLLILNGK--SAGNEELREAVGLLREEGHTLHVRVTWEKGD-AARYV 49 (300)
T ss_pred CCCceEEEEECCC--ccchHHHHHHHHHHHHcCCEEEEEEecCCCc-HHHHH
Confidence 3456888888833 4445567778888999999987754443343 44443
No 241
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.51 E-value=1.5e+02 Score=33.82 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCCCH-------HHHHHHHHHHHHHCC-CeEEEEEe
Q 005746 244 KFILIFHELSMTGA-------PLSMMELATELLSCG-ATVSAVVL 280 (679)
Q Consensus 244 KILlI~heLsmgGA-------plsmmeLAteL~s~G-~~VsaVvL 280 (679)
|||||.+....+|+ |+.+.-||..|.++| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 58888877665554 778999999999999 89988743
No 242
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=21.51 E-value=1e+02 Score=28.42 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=39.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCC--ChhHHhcCCeEEEEc-----CCC--cchhhhcCcC
Q 005746 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG--LMPELARRKIKVLED-----RGE--PSFKTSMKAD 313 (679)
Q Consensus 243 rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~~Gg--L~~EL~rrgIkVl~~-----r~~--~sfk~~~kaD 313 (679)
|||++++.. +++.....+++..|.+.|++|.++. ++... +.++. ..+-+|..+ ... ........+|
T Consensus 1 k~i~l~vtG---s~~~~~~~~~l~~L~~~g~~v~vv~-S~~A~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~D 75 (129)
T PF02441_consen 1 KRILLGVTG---SIAAYKAPDLLRRLKRAGWEVRVVL-SPSAERFVTPEG-LTGEPVYTDWDTWDRGDPAEHIELSRWAD 75 (129)
T ss_dssp -EEEEEE-S---SGGGGGHHHHHHHHHTTTSEEEEEE-SHHHHHHSHHHG-HCCSCEECTHCTCSTTTTTCHHHHHHTES
T ss_pred CEEEEEEEC---HHHHHHHHHHHHHHhhCCCEEEEEE-CCcHHHHhhhhc-cccchhhhccccCCCCCCcCcccccccCC
Confidence 577777544 2333348899999999999999764 54331 22222 333455544 111 1122245688
Q ss_pred EEEEcc
Q 005746 314 LVIAGS 319 (679)
Q Consensus 314 LVia~S 319 (679)
+++.-.
T Consensus 76 ~~vVaP 81 (129)
T PF02441_consen 76 AMVVAP 81 (129)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 876544
No 243
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.92 E-value=2.6e+02 Score=25.78 Aligned_cols=72 Identities=7% Similarity=0.098 Sum_probs=47.6
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 582 GSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 582 Gs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
|.|. ....+-+-+++.++..|++-.|. .....++.+....+|++++..| ..=-+.-+-=.|-..|+||..-+
T Consensus 8 ~~Ga-SSs~la~km~~~a~~~gi~~~i~-a~~~~e~~~~~~~~Dvill~PQ-v~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 8 AGGG-TSGLLANALNKGAKERGVPLEAA-AGAYGSHYDMIPDYDLVILAPQ-MASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred CCCC-CHHHHHHHHHHHHHHCCCcEEEE-EeeHHHHHHhccCCCEEEEcCh-HHHHHHHHHHHhhhcCCCEEEeC
Confidence 4442 34456666777788888863332 4446788899999999999998 23333334444555688998766
No 244
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.81 E-value=2.8e+02 Score=28.63 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=35.7
Q ss_pred HHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHcCCCEEEeC
Q 005746 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPKNISQ 656 (679)
Q Consensus 595 L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq~~~EgFGrV~IEAMA~GlPVV~S~ 656 (679)
.+.+.+...-...|.-.....++.++++.||++|-..- =.+|=|+++|+|+++-.
T Consensus 222 ~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-------H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 222 ARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-------HALILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-------HHHHHHHHcCCCEEEee
Confidence 34444433323345422234678889999997776663 16788999999999763
No 245
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=20.63 E-value=2.5e+02 Score=27.87 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Q 005746 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (679)
Q Consensus 244 KILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVv 279 (679)
|.++|+- |+.-.-.++|.+|++.|++|.++.
T Consensus 11 k~~lItG-----~~~gIG~a~a~~l~~~G~~vv~~~ 41 (253)
T PRK08993 11 KVAVVTG-----CDTGLGQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred CEEEEEC-----CCchHHHHHHHHHHHCCCEEEEec
Confidence 5566632 222345688999999999987653
No 246
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.63 E-value=1.5e+02 Score=31.74 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=32.9
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHhCCCCCcEEECCCchhHHHHHHHcCEEEEcCC
Q 005746 576 ILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQ 632 (679)
Q Consensus 576 vLiG~VGs~snk~~y~k~~L~~L~~~lnLs~~V~ftG~~tdVaslysAADV~VlpSq 632 (679)
++|| |+..-...-+.+.++.+....+|| -++|.|..+.+.. .||.|.+||-
T Consensus 45 ImIG--GS~gvt~~~~~~~v~~ik~~~~lP-vilfP~~~~~is~---~aDavff~sv 95 (240)
T COG1646 45 IMIG--GSDGVTEENVDNVVEAIKERTDLP-VILFPGSPSGISP---YADAVFFPSV 95 (240)
T ss_pred EEEC--CcccccHHHHHHHHHHHHhhcCCC-EEEecCChhccCc---cCCeEEEEEE
Confidence 6665 432112234677777777678886 5788887665554 8999877664
No 247
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=20.50 E-value=1.8e+02 Score=31.76 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCCCChh---HHh-cCCeEEEEcCCCcchhhhcCcCEEEEcchh
Q 005746 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA-RRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (679)
Q Consensus 252 LsmgGAplsmmeLAteL~s~G~~VsaVvLs~~GgL~~---EL~-rrgIkVl~~r~~~sfk~~~kaDLVia~Sav 321 (679)
++.||. -| .+|..|.+.|++|++.-......... .+. ..||++..... . .....+|+|+..+++
T Consensus 5 iG~G~~--G~-a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~--~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 5 LGLGKT--GR-AVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-L--EDLNNADLVVKSPGI 72 (433)
T ss_pred EEeCHh--HH-HHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-h--HHhccCCEEEECCCC
Confidence 445553 33 89999999999987643221111211 232 35888865422 1 112468999887765
No 248
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=20.08 E-value=1.6e+02 Score=32.19 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Q 005746 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK 282 (679)
Q Consensus 242 ~rKILlI~heLsmgGAplsmmeLAteL~s~G~~VsaVvLs~ 282 (679)
..++|+.+. ..|--..|+++|..|+++||+|+++....
T Consensus 6 ~~~il~~~p---~~sH~~~~~~la~~L~~~gh~vt~~~~~~ 43 (496)
T KOG1192|consen 6 AHNILVPFP---GQSHLNPMLQLAKRLAERGHNVTVVTPSF 43 (496)
T ss_pred ceeEEEECC---cccHHHHHHHHHHHHHHcCCceEEEEeec
Confidence 345666666 45666789999999999999999887554
No 249
>PRK06128 oxidoreductase; Provisional
Probab=20.01 E-value=4.2e+02 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCeEEEEEeC
Q 005746 261 MMELATELLSCGATVSAVVLS 281 (679)
Q Consensus 261 mmeLAteL~s~G~~VsaVvLs 281 (679)
-..+|..|++.|++|.++.+.
T Consensus 68 G~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 68 GRATAIAFAREGADIALNYLP 88 (300)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 357888999999998765443
Done!