BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005747
(679 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 226 LKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSV-- 283
L+K R L+ILD++W + LKA C++LLT R + M + V
Sbjct: 232 LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVES 284
Query: 284 SFLKEE--EAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFD 341
S KE+ E SLF M + +L E A + KEC G P+ + + LRD +
Sbjct: 285 SLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--R 337
Query: 342 WKDALEQLRRPSSTNLMNVQPTAYKAI 368
W+ L+QL+ + Y+A+
Sbjct: 338 WEYYLKQLQNKQFKRIRKSSSYDYEAL 364
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 226 LKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSV-- 283
L+K R L+ILD++W + LKA C++LLT R + M + V
Sbjct: 238 LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVES 290
Query: 284 SFLKEE--EAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFD 341
S KE+ E SLF M + +L E A + KEC G P+ + + LRD +
Sbjct: 291 SLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--R 343
Query: 342 WKDALEQLRRPSSTNLMNVQPTAYKAI 368
W+ L+QL+ + Y+A+
Sbjct: 344 WEYYLKQLQNKQFKRIRKSSSYDYEAL 370
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 226 LKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSV-S 284
L+K R L+ILD++W LKA C++LLT R + M + V S
Sbjct: 232 LRKHPRSLLILDDVWDPWVLKAFD-------NQCQILLTTRDKSVTDSVMGPKHVVPVES 284
Query: 285 FLKEE---EAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFD 341
L E E SLF M + +L A + KEC G P+ + + LRD +
Sbjct: 285 GLGREKGLEILSLFVNMKKE-----DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--R 337
Query: 342 WKDALEQLRRPSSTNLMNVQPTAYKAI 368
W L QL+ + Y+A+
Sbjct: 338 WAYYLRQLQNKQFKRIRKSSSYDYEAL 364
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 474 KLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLS 533
KL DI+ +++L L L L G+ ++ LP V +P V KL+
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 534 HLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKI 593
+L LY+ + +++ + +L +L L+L + +LP G+F +KL + K
Sbjct: 134 NLTYLYL-------YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF-DKLTQLKQ 185
Query: 594 L 594
L
Sbjct: 186 L 186
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 25/166 (15%)
Query: 474 KLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLS 533
KL DI+ +++L L L L G+ ++ LP V +P V KL+
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 534 HLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKI 593
+L L + +++ + +L +L L+L + +LP G+F +KL + K
Sbjct: 134 NLTYLNLA-------HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF-DKLTQLKD 185
Query: 594 LIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSD 639
L R ++ L S + DG+ +L ++ +WL D
Sbjct: 186 L--------------RLYQNQLKS---VPDGVFDRLTSLQYIWLHD 214
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 18/147 (12%)
Query: 226 LKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSV-S 284
L+K R L+ILD++W LKA C++LLT + M + V S
Sbjct: 239 LRKHPRSLLILDDVWDPWVLKAFD-------NQCQILLTTSDKSVTDSVMGPKHVVPVES 291
Query: 285 FLKEE---EAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFD 341
L E E SLF M + +L A + KEC G P+ + + LRD +
Sbjct: 292 GLGREKGLEILSLFVNMKKE-----DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--R 344
Query: 342 WKDALEQLRRPSSTNLMNVQPTAYKAI 368
W L QL+ + Y+A+
Sbjct: 345 WAYYLRQLQNKQFKRIRKSSSYDYEAL 371
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L+ V L L+ L L + + LPV V ++P V +L HL
Sbjct: 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLF--LEKLERYKI 593
+EL+M + +E L HL L L + ++P G F L L +
Sbjct: 115 KELFMCCNKLTELPRGIE--------RLTHLTHLALDQNQLKSIPHGAFDRLSSLT-HAY 165
Query: 594 LIGGVWGWEYADI 606
L G W E DI
Sbjct: 166 LFGNPWDCECRDI 178
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 524 IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL 583
+P V +L+ L +LY+G +++ + N ++L L L L + +LP G+
Sbjct: 43 LPNGVFDELTSLTQLYLGGN-------KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 584 FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWL 637
F +KL + K E ++ + L DG+ KL ++DL L
Sbjct: 96 F-DKLTQLK-----------------ELALNTNQLQSLPDGVFDKLTQLKDLRL 131
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + + + + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + + + + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + ++LK LE L + + ++ LP+ V +PP V L+ L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 536 EELYMG-------PRS-FDK---------WEVEVEGVKNASLHELKHLISLELQIQDVNT 578
L +G P+ FDK + +++ V + +L L +L+L +
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 579 LPRGLFLEKLERYKIL 594
+P G F + LE+ K+L
Sbjct: 196 VPEGAF-DSLEKLKML 210
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + + + + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 151
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + + + + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 152 EKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 204
Query: 596 GGVW 599
G W
Sbjct: 205 GNPW 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + + + + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + ++ + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLA-------NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + ++ + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLA-------NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + ++ + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLA-------NNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + ++ + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLA-------NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 476 LDITVIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHL 535
L + +R L +L+ L L+G+++K LP P +L+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLP------------------------PGLLTPTPKL 150
Query: 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595
E+L + ++ + L+ L++L +L LQ + T+P+G F L + L
Sbjct: 151 EKLSLA-------NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 596 GGVW 599
G W
Sbjct: 204 GNPW 207
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 524 IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL 583
+P V KL+ L +L + + +++ + + +L L L L + +LP G+
Sbjct: 43 LPHGVFDKLTQLTKLSLS-------QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95
Query: 584 FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWL 637
F +KL + K E +D + + DG+ +L ++ +WL
Sbjct: 96 F-DKLTQLK-----------------ELALDTNQLKSVPDGIFDRLTSLQKIWL 131
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|4H35|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum Before Exposure To 266nm Uv Laser
pdb|4H35|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum Before Exposure To 266nm Uv Laser
Length = 297
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 337 NSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLIGY 389
+S F ++ A++ RP+ + +N P A + +K +Y + G + N++L GY
Sbjct: 13 SSSFKYESAVQ--YRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGY 63
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1WB4|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Sinapinate
pdb|1WB4|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Sinapinate
pdb|1WB5|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Syringate
pdb|1WB5|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Syringate
pdb|1WB6|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Vanillate
pdb|1WB6|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Vanillate
Length = 297
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 337 NSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLIGY 389
+S F ++ A++ RP+ + +N P A + +K +Y + G + N++L GY
Sbjct: 13 SSSFKYESAVQ--YRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGY 63
>pdb|2Q9U|A Chain A, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
pdb|2Q9U|B Chain B, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
Length = 414
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 217 GRARRLHDRLKK----EKRILVILDNIWGNLDLKAAGIPHGDDHRGCK-VLLTARSLDTL 271
G A +DR K +K++ V+LD+++G A + G GC+ VLL S D
Sbjct: 240 GLAIAEYDRWSKGQHCQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDIT 299
Query: 272 STKMDSQKNFSVSF 285
+ + + +V+F
Sbjct: 300 KVALHTYDSGAVAF 313
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 273 TKMDSQKNFSVSFLKEEEAWSLFKKMA-----GDYVEGNELKEVARDVAK-ECAGLPVAI 326
TKMD K VS L E LFK+ D +G L ++ +A E A
Sbjct: 367 TKMDYPKQTQVSVLPEGGETPLFKQFFKNWRDPDQTDGLGLSYLSSHIANVERVPFDAAT 426
Query: 327 VTVATALRDNNSLFDWKDALEQLRRPSSTNLMNVQPTAY 365
+ +TA+ + + D +Q+ R +N + V P Y
Sbjct: 427 LHTSTAMAAQHGMDDDGTGQKQIWRIEGSNKVPVDPATY 465
>pdb|3HYN|A Chain A, Crystal Structure Of A Putative Signal Transduction
Protein (Eubrec_0645) From Eubacterium Rectale Atcc
33656 At 1.20 A Resolution
Length = 189
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 221 RLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKN 280
RLH RL K I++ L +I N +G +G V++ D S +DS N
Sbjct: 72 RLHTRLDNSKNIILFLSSITANSRALREEXNYGIGTKGLPVIVIYPDYDKKSDIVDSNGN 131
Query: 281 F 281
F
Sbjct: 132 F 132
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 28/124 (22%)
Query: 480 VIRDLKKLEVLCLRGSDIKRLPVEVGXXXXXXXXXXXXXXXXXIIPPNVLSKLSHLEELY 539
++ L+KLE+L L+ +++ RL P L LSHL L
Sbjct: 509 MLEGLEKLEILDLQHNNLARLWKHANPGG----------------PIYFLKGLSHLHILN 552
Query: 540 MGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLF-----LEKLERYKIL 594
+ FD E+ VE K+ L ELK ++L + ++NTLP +F L+ L K L
Sbjct: 553 LESNGFD--EIPVEVFKD--LFELK---IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 605
Query: 595 IGGV 598
I V
Sbjct: 606 ITSV 609
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,443,895
Number of Sequences: 62578
Number of extensions: 672333
Number of successful extensions: 1821
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1802
Number of HSP's gapped (non-prelim): 46
length of query: 679
length of database: 14,973,337
effective HSP length: 105
effective length of query: 574
effective length of database: 8,402,647
effective search space: 4823119378
effective search space used: 4823119378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)