Query 005747
Match_columns 679
No_of_seqs 672 out of 3521
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 13:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.5E-74 1.2E-78 642.5 43.8 511 28-543 39-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-56 3.6E-61 529.6 45.6 447 127-597 181-715 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.5E-43 1.6E-47 355.4 17.6 273 135-410 1-284 (287)
4 KOG4194 Membrane glycoprotein 99.8 3E-21 6.6E-26 196.1 4.3 225 441-674 174-408 (873)
5 KOG0444 Cytoskeletal regulator 99.8 9.9E-22 2.1E-26 200.8 -2.2 228 440-677 103-358 (1255)
6 PLN00113 leucine-rich repeat r 99.8 9.4E-20 2E-24 216.8 12.7 149 441-597 141-295 (968)
7 KOG4194 Membrane glycoprotein 99.8 1.4E-20 3E-25 191.4 4.0 225 440-676 102-335 (873)
8 PLN00113 leucine-rich repeat r 99.8 2.4E-19 5.2E-24 213.3 14.1 202 462-675 139-350 (968)
9 KOG0444 Cytoskeletal regulator 99.8 3.3E-21 7.1E-26 197.0 -3.1 224 440-678 78-313 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 1.9E-20 4.2E-25 182.4 -3.0 226 440-674 206-544 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 9.8E-21 2.1E-25 184.4 -7.3 222 440-676 68-293 (565)
12 KOG0617 Ras suppressor protein 99.7 1.3E-19 2.7E-24 156.7 -5.0 166 454-652 25-192 (264)
13 KOG0617 Ras suppressor protein 99.7 7.5E-19 1.6E-23 151.9 -5.0 156 440-604 33-191 (264)
14 PRK15370 E3 ubiquitin-protein 99.7 7.3E-17 1.6E-21 179.9 8.5 98 440-547 199-297 (754)
15 PLN03210 Resistant to P. syrin 99.7 3.8E-16 8.2E-21 186.3 14.7 198 440-651 611-821 (1153)
16 PRK15370 E3 ubiquitin-protein 99.7 2.6E-16 5.7E-21 175.5 12.3 206 440-676 178-385 (754)
17 PRK15387 E3 ubiquitin-protein 99.7 2E-16 4.3E-21 175.2 10.8 200 440-672 242-459 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 9.3E-16 2E-20 170.0 11.4 74 565-641 383-456 (788)
19 KOG0618 Serine/threonine phosp 99.6 2.1E-17 4.4E-22 177.4 -1.6 223 440-669 241-487 (1081)
20 KOG4237 Extracellular matrix p 99.5 3.5E-15 7.5E-20 145.9 -0.1 128 440-575 67-199 (498)
21 KOG0618 Serine/threonine phosp 99.5 5.2E-15 1.1E-19 159.2 -1.1 224 441-676 46-282 (1081)
22 KOG4237 Extracellular matrix p 99.5 6.6E-15 1.4E-19 144.0 -1.1 110 465-581 69-181 (498)
23 KOG3207 Beta-tubulin folding c 99.4 6.8E-14 1.5E-18 138.9 1.2 209 440-672 121-340 (505)
24 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-13 3.4E-18 142.1 3.8 226 442-673 25-293 (319)
25 KOG0532 Leucine-rich repeat (L 99.4 7.9E-15 1.7E-19 149.8 -6.0 174 444-677 79-253 (722)
26 PRK04841 transcriptional regul 99.4 7.3E-11 1.6E-15 140.0 25.7 280 126-428 10-332 (903)
27 PF14580 LRR_9: Leucine-rich r 99.3 7.2E-13 1.6E-17 120.8 3.8 124 461-592 17-146 (175)
28 cd00116 LRR_RI Leucine-rich re 99.3 9.7E-13 2.1E-17 136.2 4.8 224 441-670 52-319 (319)
29 PF14580 LRR_9: Leucine-rich r 99.3 2.4E-12 5.2E-17 117.4 4.7 127 440-571 19-147 (175)
30 TIGR03015 pepcterm_ATPase puta 99.3 7.7E-10 1.7E-14 111.3 22.8 183 148-333 40-242 (269)
31 PRK00411 cdc6 cell division co 99.2 2.8E-09 6.2E-14 113.5 25.8 236 128-378 28-297 (394)
32 KOG1259 Nischarin, modulator o 99.2 1.8E-12 3.9E-17 122.5 0.5 133 507-675 283-416 (490)
33 PF01637 Arch_ATPase: Archaeal 99.2 8.9E-11 1.9E-15 115.5 12.4 194 132-328 1-233 (234)
34 PF05729 NACHT: NACHT domain 99.2 1.1E-10 2.4E-15 108.1 11.7 143 152-299 1-163 (166)
35 COG2909 MalT ATP-dependent tra 99.2 1.2E-09 2.5E-14 118.4 20.1 282 127-430 16-340 (894)
36 KOG1259 Nischarin, modulator o 99.2 1.7E-12 3.8E-17 122.6 -1.1 134 440-582 284-417 (490)
37 TIGR02928 orc1/cdc6 family rep 99.1 1.7E-08 3.8E-13 106.4 26.1 198 129-326 14-243 (365)
38 COG4886 Leucine-rich repeat (L 99.1 6.3E-11 1.4E-15 126.3 5.2 40 628-673 253-292 (394)
39 KOG0532 Leucine-rich repeat (L 99.1 5.7E-12 1.2E-16 129.2 -4.3 132 440-583 121-253 (722)
40 KOG3207 Beta-tubulin folding c 99.0 3.1E-11 6.7E-16 120.3 0.2 192 459-675 117-318 (505)
41 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 6.9E-15 120.9 4.8 153 440-602 116-271 (394)
42 KOG4658 Apoptotic ATPase [Sign 98.9 3.4E-09 7.4E-14 120.9 7.9 105 462-575 544-653 (889)
43 KOG0531 Protein phosphatase 1, 98.9 3.6E-10 7.8E-15 120.7 -0.2 106 440-548 95-201 (414)
44 KOG0531 Protein phosphatase 1, 98.9 2E-10 4.2E-15 122.7 -2.7 190 441-642 73-267 (414)
45 TIGR00635 ruvB Holliday juncti 98.8 1.1E-07 2.3E-12 97.6 17.3 189 130-332 4-204 (305)
46 PRK06893 DNA replication initi 98.8 4.7E-08 1E-12 95.1 13.6 152 150-330 38-204 (229)
47 PRK13342 recombination factor 98.8 7.3E-08 1.6E-12 102.6 16.0 180 127-333 9-200 (413)
48 KOG1909 Ran GTPase-activating 98.8 7.8E-10 1.7E-14 107.6 0.9 228 440-671 30-311 (382)
49 PLN03150 hypothetical protein; 98.8 1.3E-08 2.8E-13 113.8 9.1 103 465-575 420-526 (623)
50 PRK00080 ruvB Holliday junctio 98.8 3E-07 6.5E-12 94.9 17.7 191 127-331 22-224 (328)
51 PLN03150 hypothetical protein; 98.8 1.4E-08 2.9E-13 113.6 8.3 103 487-597 420-526 (623)
52 PRK07003 DNA polymerase III su 98.7 8.4E-07 1.8E-11 97.0 20.0 187 127-331 13-223 (830)
53 PTZ00112 origin recognition co 98.7 1.2E-06 2.5E-11 96.3 21.0 204 130-334 755-987 (1164)
54 PRK12402 replication factor C 98.7 3.4E-07 7.3E-12 95.5 16.5 199 128-328 13-225 (337)
55 COG2256 MGS1 ATPase related to 98.7 3.1E-07 6.7E-12 91.8 14.7 171 128-325 22-208 (436)
56 PRK05564 DNA polymerase III su 98.7 5.3E-07 1.1E-11 92.4 16.4 176 130-327 4-188 (313)
57 PF13855 LRR_8: Leucine rich r 98.7 1.5E-08 3.3E-13 75.9 3.7 60 485-545 1-61 (61)
58 COG3899 Predicted ATPase [Gene 98.7 6.3E-07 1.4E-11 102.9 17.4 260 132-400 2-331 (849)
59 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.3E-07 5E-12 90.7 12.0 170 134-331 21-203 (226)
60 KOG2982 Uncharacterized conser 98.6 1.7E-09 3.6E-14 102.8 -3.1 186 461-672 69-263 (418)
61 PF13173 AAA_14: AAA domain 98.6 8E-08 1.7E-12 84.4 7.1 121 151-291 2-127 (128)
62 PLN03025 replication factor C 98.6 7.6E-07 1.6E-11 91.5 15.3 185 127-327 10-198 (319)
63 PRK14961 DNA polymerase III su 98.6 1.4E-06 3E-11 91.1 17.4 180 128-329 14-220 (363)
64 COG1474 CDC6 Cdc6-related prot 98.6 4.3E-06 9.2E-11 86.4 20.6 199 131-330 18-239 (366)
65 PF13855 LRR_8: Leucine rich r 98.6 3E-08 6.5E-13 74.3 3.1 61 508-576 1-61 (61)
66 PRK00440 rfc replication facto 98.6 1.9E-06 4E-11 89.2 17.7 184 128-328 15-202 (319)
67 PRK14949 DNA polymerase III su 98.6 7.9E-07 1.7E-11 99.1 15.4 185 127-329 13-220 (944)
68 KOG1909 Ran GTPase-activating 98.6 3.5E-08 7.6E-13 96.3 4.3 214 458-672 25-284 (382)
69 PRK04195 replication factor C 98.6 4.1E-06 8.9E-11 91.1 20.9 185 127-334 11-207 (482)
70 PRK06645 DNA polymerase III su 98.6 1.8E-06 3.9E-11 92.7 17.4 178 127-326 18-226 (507)
71 PRK12323 DNA polymerase III su 98.6 9E-07 1.9E-11 95.5 14.9 181 127-329 13-225 (700)
72 PTZ00202 tuzin; Provisional 98.6 3.6E-06 7.8E-11 85.9 17.8 165 125-299 257-434 (550)
73 cd00009 AAA The AAA+ (ATPases 98.6 6.6E-07 1.4E-11 80.7 11.5 122 133-268 1-130 (151)
74 KOG1859 Leucine-rich repeat pr 98.6 1.6E-09 3.4E-14 114.5 -6.7 129 440-578 164-293 (1096)
75 PF13401 AAA_22: AAA domain; P 98.6 3.3E-07 7.2E-12 81.0 9.1 116 150-267 3-125 (131)
76 PRK14963 DNA polymerase III su 98.5 2.8E-06 6E-11 91.7 17.6 196 128-327 12-215 (504)
77 PRK14960 DNA polymerase III su 98.5 1.5E-06 3.4E-11 93.9 15.5 183 127-327 12-217 (702)
78 TIGR02903 spore_lon_C ATP-depe 98.5 4.9E-06 1.1E-10 92.4 20.0 204 127-332 151-398 (615)
79 PRK14962 DNA polymerase III su 98.5 2.8E-06 6.1E-11 90.9 16.8 189 127-333 11-223 (472)
80 PF05496 RuvB_N: Holliday junc 98.5 1.4E-06 3.1E-11 81.4 12.2 178 126-332 20-224 (233)
81 COG3903 Predicted ATPase [Gene 98.5 1.8E-07 3.9E-12 94.2 6.6 234 150-396 13-258 (414)
82 cd01128 rho_factor Transcripti 98.5 3.4E-07 7.3E-12 89.3 8.3 92 150-242 15-115 (249)
83 PRK14956 DNA polymerase III su 98.5 4.3E-06 9.4E-11 88.0 15.6 197 127-327 15-220 (484)
84 PRK14957 DNA polymerase III su 98.4 5.2E-06 1.1E-10 89.8 16.5 186 128-331 14-223 (546)
85 PRK14964 DNA polymerase III su 98.4 5.3E-06 1.1E-10 88.4 16.2 183 127-327 10-215 (491)
86 PRK07940 DNA polymerase III su 98.4 7.1E-06 1.5E-10 85.7 16.6 176 130-329 5-213 (394)
87 PRK07471 DNA polymerase III su 98.4 1E-05 2.2E-10 83.9 17.5 195 126-329 15-238 (365)
88 PRK08691 DNA polymerase III su 98.4 4E-06 8.6E-11 91.7 15.0 185 127-329 13-220 (709)
89 TIGR02397 dnaX_nterm DNA polym 98.4 1E-05 2.2E-10 85.0 17.8 185 127-330 11-219 (355)
90 PRK07994 DNA polymerase III su 98.4 3.7E-06 8E-11 92.3 14.7 181 127-329 13-220 (647)
91 TIGR00678 holB DNA polymerase 98.4 7.2E-06 1.6E-10 77.4 15.0 159 141-324 3-186 (188)
92 PRK14951 DNA polymerase III su 98.4 7.2E-06 1.6E-10 89.9 16.8 181 127-329 13-225 (618)
93 KOG1859 Leucine-rich repeat pr 98.4 4.5E-09 9.7E-14 111.1 -7.6 180 456-672 102-293 (1096)
94 PRK09112 DNA polymerase III su 98.4 9.4E-06 2E-10 83.6 16.6 198 126-329 19-240 (351)
95 KOG2227 Pre-initiation complex 98.4 2.2E-05 4.8E-10 80.2 18.3 195 128-322 148-361 (529)
96 PRK08727 hypothetical protein; 98.4 4.3E-06 9.4E-11 81.5 13.0 161 138-326 28-201 (233)
97 PRK09376 rho transcription ter 98.4 1E-06 2.2E-11 89.5 8.6 90 151-241 169-267 (416)
98 PRK05896 DNA polymerase III su 98.4 7.3E-06 1.6E-10 88.7 15.6 197 127-331 13-223 (605)
99 PRK08084 DNA replication initi 98.4 6.7E-06 1.5E-10 80.3 14.2 166 136-329 30-209 (235)
100 PRK14958 DNA polymerase III su 98.4 6.8E-06 1.5E-10 89.0 15.5 184 127-328 13-219 (509)
101 TIGR01242 26Sp45 26S proteasom 98.4 4.7E-06 1E-10 87.4 14.0 175 127-323 119-328 (364)
102 PRK13341 recombination factor 98.4 5.7E-06 1.2E-10 92.8 15.1 172 127-324 25-212 (725)
103 PF13191 AAA_16: AAA ATPase do 98.4 1.2E-06 2.6E-11 82.6 8.1 48 131-178 1-51 (185)
104 PRK14970 DNA polymerase III su 98.3 2E-05 4.3E-10 82.9 17.7 181 128-326 15-206 (367)
105 PRK14955 DNA polymerase III su 98.3 8.7E-06 1.9E-10 86.1 14.6 200 128-328 14-227 (397)
106 PRK14959 DNA polymerase III su 98.3 1.2E-05 2.6E-10 87.5 15.3 188 128-333 14-225 (624)
107 PRK09087 hypothetical protein; 98.3 1.2E-05 2.6E-10 77.7 13.5 142 150-328 43-194 (226)
108 PRK14969 DNA polymerase III su 98.3 1.5E-05 3.3E-10 86.9 15.8 184 128-329 14-221 (527)
109 PRK14971 DNA polymerase III su 98.3 2.7E-05 5.9E-10 86.3 17.4 181 128-327 15-220 (614)
110 KOG2120 SCF ubiquitin ligase, 98.3 6.2E-08 1.3E-12 92.3 -2.8 154 440-597 185-349 (419)
111 PRK09111 DNA polymerase III su 98.3 2.6E-05 5.7E-10 85.7 16.8 199 127-330 21-234 (598)
112 KOG2028 ATPase related to the 98.3 1.3E-05 2.8E-10 78.8 12.5 135 142-298 153-293 (554)
113 PRK08451 DNA polymerase III su 98.2 4.4E-05 9.4E-10 82.3 17.6 185 128-330 12-219 (535)
114 PRK03992 proteasome-activating 98.2 2.1E-05 4.5E-10 82.9 14.5 175 127-323 128-337 (389)
115 TIGR00767 rho transcription te 98.2 7E-06 1.5E-10 83.9 10.1 92 150-242 167-267 (415)
116 PRK07764 DNA polymerase III su 98.2 4.2E-05 9.1E-10 87.1 16.9 182 128-327 13-219 (824)
117 KOG4579 Leucine-rich repeat (L 98.2 8.7E-08 1.9E-12 80.8 -3.3 104 441-546 28-136 (177)
118 PRK14954 DNA polymerase III su 98.2 5.2E-05 1.1E-09 83.5 16.8 196 128-324 14-223 (620)
119 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 3.9E-11 59.1 3.4 38 464-501 2-40 (44)
120 PRK14950 DNA polymerase III su 98.2 6.8E-05 1.5E-09 83.3 17.6 196 128-330 14-222 (585)
121 PRK05642 DNA replication initi 98.2 4.1E-05 8.8E-10 74.7 14.0 151 151-329 45-208 (234)
122 PRK14952 DNA polymerase III su 98.2 7.5E-05 1.6E-09 81.7 17.5 185 127-333 10-224 (584)
123 PRK06305 DNA polymerase III su 98.1 6.7E-05 1.5E-09 80.3 16.4 183 128-329 15-223 (451)
124 PHA02544 44 clamp loader, smal 98.1 2.1E-05 4.5E-10 81.1 12.2 148 127-297 18-171 (316)
125 KOG1644 U2-associated snRNP A' 98.1 3.7E-06 8E-11 76.2 5.2 123 443-572 22-148 (233)
126 PRK07133 DNA polymerase III su 98.1 9.2E-05 2E-09 82.1 17.1 181 127-329 15-220 (725)
127 PF05621 TniB: Bacterial TniB 98.1 0.00011 2.4E-09 72.2 15.8 190 136-326 43-258 (302)
128 PRK14948 DNA polymerase III su 98.1 0.00011 2.5E-09 81.4 17.8 197 127-329 13-222 (620)
129 PF12799 LRR_4: Leucine Rich r 98.1 4.5E-06 9.7E-11 57.2 4.2 34 486-519 2-35 (44)
130 PRK14953 DNA polymerase III su 98.1 0.00013 2.9E-09 78.6 17.6 181 128-330 14-221 (486)
131 PF14516 AAA_35: AAA-like doma 98.1 0.00036 7.9E-09 71.9 20.1 201 127-335 8-245 (331)
132 KOG4579 Leucine-rich repeat (L 98.1 4.5E-07 9.7E-12 76.6 -1.1 89 440-529 53-143 (177)
133 KOG2120 SCF ubiquitin ligase, 98.1 2.3E-07 5E-12 88.5 -3.1 177 464-669 186-374 (419)
134 TIGR03689 pup_AAA proteasome A 98.1 7.4E-05 1.6E-09 80.1 15.1 162 127-301 179-380 (512)
135 PF00308 Bac_DnaA: Bacterial d 98.1 2.1E-05 4.5E-10 75.8 9.9 160 151-327 34-206 (219)
136 KOG0989 Replication factor C, 98.1 4E-05 8.8E-10 74.1 11.6 192 126-329 32-231 (346)
137 PRK08903 DnaA regulatory inact 98.0 6.1E-05 1.3E-09 73.5 12.9 166 137-334 27-204 (227)
138 PRK06647 DNA polymerase III su 98.0 0.00018 3.9E-09 78.8 17.7 180 127-329 13-220 (563)
139 PRK15386 type III secretion pr 98.0 1.4E-05 3.1E-10 82.2 8.3 74 460-544 49-123 (426)
140 COG5238 RNA1 Ran GTPase-activa 98.0 6E-06 1.3E-10 78.0 4.8 80 440-519 30-131 (388)
141 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.6E-11 83.7 0.1 185 461-673 43-239 (418)
142 PRK07399 DNA polymerase III su 98.0 0.00021 4.5E-09 72.7 16.2 195 130-329 4-221 (314)
143 PRK14965 DNA polymerase III su 98.0 0.00011 2.3E-09 81.4 15.1 183 127-331 13-223 (576)
144 PRK14087 dnaA chromosomal repl 98.0 5.2E-05 1.1E-09 81.1 12.3 167 152-332 142-322 (450)
145 PRK15386 type III secretion pr 98.0 1.6E-05 3.4E-10 81.9 7.7 134 480-640 47-187 (426)
146 TIGR02881 spore_V_K stage V sp 98.0 8.3E-05 1.8E-09 74.1 12.5 154 131-300 7-192 (261)
147 TIGR03345 VI_ClpV1 type VI sec 98.0 8.1E-05 1.8E-09 85.9 13.5 180 129-322 186-389 (852)
148 KOG3665 ZYG-1-like serine/thre 97.9 5E-06 1.1E-10 92.9 3.4 136 440-577 122-263 (699)
149 PTZ00454 26S protease regulato 97.9 0.00015 3.2E-09 76.1 14.1 175 127-323 142-351 (398)
150 CHL00095 clpC Clp protease ATP 97.9 0.00012 2.5E-09 85.0 14.1 156 130-298 179-353 (821)
151 CHL00181 cbbX CbbX; Provisiona 97.9 0.00023 5E-09 71.5 14.5 133 152-300 60-210 (287)
152 PRK05563 DNA polymerase III su 97.9 0.0005 1.1E-08 75.8 18.2 193 127-327 13-218 (559)
153 KOG2543 Origin recognition com 97.9 0.0001 2.2E-09 73.6 10.7 164 130-298 6-192 (438)
154 PRK06620 hypothetical protein; 97.9 8.6E-05 1.9E-09 71.2 10.2 135 152-326 45-186 (214)
155 TIGR02639 ClpA ATP-dependent C 97.9 0.00015 3.3E-09 83.0 13.7 156 129-299 181-358 (731)
156 KOG1644 U2-associated snRNP A' 97.9 2.4E-05 5.2E-10 71.0 5.7 123 465-595 21-149 (233)
157 PTZ00361 26 proteosome regulat 97.9 0.00013 2.8E-09 77.1 11.8 153 129-301 182-369 (438)
158 TIGR02880 cbbX_cfxQ probable R 97.8 0.00032 6.8E-09 70.6 14.2 132 153-300 60-209 (284)
159 KOG0991 Replication factor C, 97.8 0.00016 3.4E-09 67.0 10.6 101 128-242 25-125 (333)
160 TIGR01241 FtsH_fam ATP-depende 97.8 0.00042 9.2E-09 75.8 16.0 176 126-323 51-260 (495)
161 COG2255 RuvB Holliday junction 97.8 0.00037 7.9E-09 67.0 13.1 177 127-332 23-226 (332)
162 PRK05707 DNA polymerase III su 97.8 0.00046 1E-08 70.6 14.7 152 151-329 22-203 (328)
163 PRK11331 5-methylcytosine-spec 97.8 8.8E-05 1.9E-09 77.4 9.4 108 130-242 175-284 (459)
164 COG1373 Predicted ATPase (AAA+ 97.8 0.00035 7.6E-09 73.6 14.1 164 134-327 21-190 (398)
165 smart00382 AAA ATPases associa 97.8 0.00015 3.2E-09 64.6 9.2 90 152-244 3-92 (148)
166 KOG2123 Uncharacterized conser 97.7 2.8E-06 6.1E-11 80.5 -2.3 99 440-539 19-123 (388)
167 TIGR00362 DnaA chromosomal rep 97.7 0.00036 7.9E-09 74.4 13.3 158 152-326 137-307 (405)
168 PRK14088 dnaA chromosomal repl 97.7 0.00035 7.5E-09 74.8 13.1 183 151-349 130-332 (440)
169 PRK10536 hypothetical protein; 97.7 0.00038 8.2E-09 67.2 11.9 58 127-186 52-109 (262)
170 PRK00149 dnaA chromosomal repl 97.7 0.00033 7.2E-09 75.7 12.7 182 151-349 148-349 (450)
171 COG5238 RNA1 Ran GTPase-activa 97.7 1.6E-05 3.5E-10 75.2 2.2 214 440-673 58-318 (388)
172 PF05673 DUF815: Protein of un 97.7 0.0035 7.6E-08 59.9 17.6 90 126-241 23-117 (249)
173 CHL00176 ftsH cell division pr 97.7 0.001 2.2E-08 74.0 16.3 172 129-322 182-387 (638)
174 PRK08769 DNA polymerase III su 97.7 0.0017 3.7E-08 65.8 16.4 174 137-329 11-208 (319)
175 PRK14086 dnaA chromosomal repl 97.6 0.00065 1.4E-08 74.0 13.5 155 152-323 315-482 (617)
176 PRK08058 DNA polymerase III su 97.6 0.0014 3E-08 67.5 15.5 146 131-298 6-181 (329)
177 COG1222 RPT1 ATP-dependent 26S 97.6 0.0025 5.4E-08 63.5 16.0 184 127-334 148-372 (406)
178 PF13177 DNA_pol3_delta2: DNA 97.6 0.00095 2.1E-08 61.0 12.0 137 134-287 1-162 (162)
179 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00097 2.1E-08 77.7 14.4 157 129-299 172-349 (852)
180 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00098 2.1E-08 71.7 13.3 175 129-323 227-429 (489)
181 PRK10865 protein disaggregatio 97.5 0.00088 1.9E-08 77.7 13.7 157 129-299 177-354 (857)
182 PRK11034 clpA ATP-dependent Cl 97.5 0.00027 6E-09 79.9 9.3 157 130-299 186-362 (758)
183 PF00004 AAA: ATPase family as 97.5 0.00023 4.9E-09 62.7 6.9 69 154-242 1-70 (132)
184 KOG2739 Leucine-rich acidic nu 97.5 2.4E-05 5.3E-10 74.1 0.6 58 462-519 42-102 (260)
185 PRK06871 DNA polymerase III su 97.5 0.0056 1.2E-07 62.2 17.2 175 138-326 10-200 (325)
186 KOG0731 AAA+-type ATPase conta 97.5 0.0022 4.7E-08 70.9 15.0 174 131-325 312-520 (774)
187 TIGR00602 rad24 checkpoint pro 97.5 0.00057 1.2E-08 75.4 10.5 51 126-176 80-135 (637)
188 COG0593 DnaA ATPase involved i 97.5 0.003 6.5E-08 65.4 15.0 134 150-300 112-258 (408)
189 PRK12422 chromosomal replicati 97.5 0.0015 3.2E-08 69.9 13.3 152 152-322 142-306 (445)
190 COG1223 Predicted ATPase (AAA+ 97.4 0.0015 3.2E-08 61.8 11.1 172 129-322 120-318 (368)
191 PRK08181 transposase; Validate 97.4 0.0013 2.8E-08 65.0 11.3 80 142-241 99-178 (269)
192 PRK06090 DNA polymerase III su 97.4 0.0076 1.6E-07 61.1 16.8 161 138-329 11-201 (319)
193 COG0466 Lon ATP-dependent Lon 97.4 0.002 4.3E-08 69.9 12.8 153 133-299 326-508 (782)
194 PRK08118 topology modulation p 97.4 0.00012 2.6E-09 67.2 3.4 35 152-186 2-37 (167)
195 PHA00729 NTP-binding motif con 97.4 0.0017 3.6E-08 61.8 11.0 35 141-175 7-41 (226)
196 COG3267 ExeA Type II secretory 97.4 0.021 4.5E-07 54.6 17.8 181 148-332 48-248 (269)
197 KOG0730 AAA+-type ATPase [Post 97.3 0.008 1.7E-07 64.7 16.4 159 124-302 428-618 (693)
198 TIGR01243 CDC48 AAA family ATP 97.3 0.0023 5E-08 73.6 13.4 175 128-324 176-382 (733)
199 KOG3665 ZYG-1-like serine/thre 97.3 0.00021 4.5E-09 80.2 4.4 106 440-546 148-263 (699)
200 KOG2123 Uncharacterized conser 97.3 1.3E-05 2.9E-10 76.0 -4.2 101 461-570 17-123 (388)
201 TIGR01243 CDC48 AAA family ATP 97.3 0.0043 9.3E-08 71.5 15.1 173 129-323 452-657 (733)
202 PRK07993 DNA polymerase III su 97.3 0.011 2.5E-07 60.6 16.6 165 138-327 10-202 (334)
203 PRK08116 hypothetical protein; 97.3 0.00067 1.4E-08 67.5 7.4 101 152-267 115-220 (268)
204 PF10443 RNA12: RNA12 protein; 97.3 0.014 3.1E-07 60.4 16.7 195 135-339 1-288 (431)
205 PRK12608 transcription termina 97.3 0.0023 5E-08 65.4 11.0 102 139-241 120-231 (380)
206 PRK06964 DNA polymerase III su 97.2 0.017 3.6E-07 59.3 17.0 92 229-329 131-225 (342)
207 KOG0733 Nuclear AAA ATPase (VC 97.2 0.013 2.9E-07 62.3 16.1 152 129-300 189-375 (802)
208 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.5E-09 68.7 1.6 125 415-542 19-152 (260)
209 TIGR02640 gas_vesic_GvpN gas v 97.1 0.012 2.6E-07 58.5 14.8 57 136-199 8-64 (262)
210 PRK04132 replication factor C 97.1 0.01 2.2E-07 67.6 15.7 157 159-331 574-733 (846)
211 PRK07261 topology modulation p 97.1 0.0019 4.1E-08 59.7 8.3 34 153-186 2-36 (171)
212 PF00448 SRP54: SRP54-type pro 97.1 0.0029 6.3E-08 59.6 9.7 87 151-239 1-92 (196)
213 TIGR02902 spore_lonB ATP-depen 97.1 0.0036 7.8E-08 68.8 11.4 49 127-175 62-110 (531)
214 TIGR00763 lon ATP-dependent pr 97.1 0.0052 1.1E-07 71.0 13.2 47 131-177 321-373 (775)
215 KOG1514 Origin recognition com 97.1 0.027 5.8E-07 61.2 17.1 200 131-333 397-625 (767)
216 KOG0743 AAA+-type ATPase [Post 97.1 0.17 3.7E-06 52.5 22.3 154 152-337 236-417 (457)
217 TIGR02237 recomb_radB DNA repa 97.1 0.0025 5.5E-08 61.2 9.0 48 151-201 12-59 (209)
218 PF04665 Pox_A32: Poxvirus A32 97.1 0.001 2.2E-08 64.0 6.0 35 153-189 15-49 (241)
219 COG2812 DnaX DNA polymerase II 97.1 0.0055 1.2E-07 65.6 12.1 189 127-323 13-214 (515)
220 PRK10787 DNA-binding ATP-depen 97.0 0.0065 1.4E-07 69.6 13.3 156 130-299 322-506 (784)
221 PRK12377 putative replication 97.0 0.004 8.6E-08 60.8 9.5 75 150-241 100-174 (248)
222 COG0470 HolB ATPase involved i 97.0 0.0072 1.6E-07 62.5 12.1 139 132-286 3-168 (325)
223 PRK08939 primosomal protein Dn 97.0 0.0025 5.5E-08 64.5 8.3 115 134-266 135-259 (306)
224 KOG0734 AAA+-type ATPase conta 97.0 0.0038 8.3E-08 65.1 9.2 92 130-241 304-407 (752)
225 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0039 8.5E-08 61.1 8.8 89 151-240 19-125 (235)
226 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0031 6.7E-08 73.0 9.1 106 130-242 566-680 (852)
227 TIGR02639 ClpA ATP-dependent C 96.9 0.0053 1.1E-07 70.5 10.8 102 131-242 455-565 (731)
228 KOG2035 Replication factor C, 96.8 0.043 9.3E-07 52.9 14.5 207 131-350 14-259 (351)
229 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0017 3.6E-08 66.1 5.5 47 131-177 52-104 (361)
230 PF08423 Rad51: Rad51; InterP 96.8 0.0093 2E-07 58.9 10.6 89 151-240 38-143 (256)
231 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0057 1.2E-07 71.4 10.5 106 130-242 565-679 (852)
232 PF13207 AAA_17: AAA domain; P 96.8 0.0011 2.5E-08 57.2 3.6 24 153-176 1-24 (121)
233 PRK10865 protein disaggregatio 96.8 0.0056 1.2E-07 71.2 10.1 106 130-242 568-682 (857)
234 KOG0735 AAA+-type ATPase [Post 96.8 0.0073 1.6E-07 65.3 9.8 151 151-322 431-608 (952)
235 PTZ00494 tuzin-like protein; P 96.8 0.6 1.3E-05 48.6 22.8 163 127-299 368-544 (664)
236 TIGR02238 recomb_DMC1 meiotic 96.8 0.0077 1.7E-07 61.2 9.7 89 151-240 96-201 (313)
237 KOG1969 DNA replication checkp 96.7 0.0042 9E-08 67.4 7.9 75 151-243 326-400 (877)
238 KOG0733 Nuclear AAA ATPase (VC 96.7 0.048 1E-06 58.2 15.4 151 151-323 545-718 (802)
239 COG1484 DnaC DNA replication p 96.7 0.0092 2E-07 58.8 9.8 81 142-241 98-178 (254)
240 PRK07952 DNA replication prote 96.7 0.014 3E-07 56.9 10.8 90 137-242 83-174 (244)
241 CHL00095 clpC Clp protease ATP 96.7 0.0071 1.5E-07 70.3 10.4 106 130-242 509-623 (821)
242 TIGR02012 tigrfam_recA protein 96.7 0.0076 1.6E-07 61.0 8.9 84 151-241 55-144 (321)
243 KOG0741 AAA+-type ATPase [Post 96.7 0.046 1E-06 57.3 14.5 160 150-333 537-716 (744)
244 PRK06526 transposase; Provisio 96.7 0.0021 4.6E-08 63.2 4.8 74 151-242 98-171 (254)
245 KOG0739 AAA+-type ATPase [Post 96.7 0.042 9.2E-07 53.3 13.1 91 131-241 134-236 (439)
246 KOG2004 Mitochondrial ATP-depe 96.7 0.013 2.9E-07 63.4 10.8 155 131-299 412-596 (906)
247 COG2884 FtsE Predicted ATPase 96.7 0.0073 1.6E-07 54.8 7.5 27 151-177 28-54 (223)
248 PRK10733 hflB ATP-dependent me 96.6 0.022 4.7E-07 64.2 12.9 149 152-322 186-356 (644)
249 cd00983 recA RecA is a bacter 96.6 0.0093 2E-07 60.4 8.9 83 151-240 55-143 (325)
250 PRK09354 recA recombinase A; P 96.6 0.01 2.2E-07 60.6 9.2 84 151-241 60-149 (349)
251 PRK11034 clpA ATP-dependent Cl 96.6 0.007 1.5E-07 68.8 8.9 102 131-242 459-569 (758)
252 PRK14722 flhF flagellar biosyn 96.6 0.01 2.3E-07 61.3 9.4 88 151-240 137-225 (374)
253 cd01393 recA_like RecA is a b 96.6 0.014 3.1E-07 56.8 9.9 50 151-200 19-72 (226)
254 PLN03187 meiotic recombination 96.6 0.015 3.3E-07 59.5 10.3 58 151-209 126-187 (344)
255 PRK09361 radB DNA repair and r 96.5 0.01 2.2E-07 57.7 8.6 46 151-199 23-68 (225)
256 PRK06696 uridine kinase; Valid 96.5 0.0039 8.5E-08 60.5 5.6 44 134-177 2-48 (223)
257 PRK09183 transposase/IS protei 96.5 0.0056 1.2E-07 60.6 6.8 26 151-176 102-127 (259)
258 cd01133 F1-ATPase_beta F1 ATP 96.5 0.018 3.8E-07 56.7 10.0 90 151-242 69-175 (274)
259 PRK08699 DNA polymerase III su 96.5 0.031 6.7E-07 57.2 12.2 88 229-325 112-202 (325)
260 PRK11889 flhF flagellar biosyn 96.5 0.029 6.2E-07 57.8 11.6 89 150-240 240-330 (436)
261 TIGR01425 SRP54_euk signal rec 96.5 0.091 2E-06 55.4 15.7 38 150-189 99-136 (429)
262 PRK07132 DNA polymerase III su 96.5 0.11 2.5E-06 52.3 15.8 166 139-327 5-183 (299)
263 COG2607 Predicted ATPase (AAA+ 96.5 0.037 8.1E-07 52.2 11.2 115 128-268 58-183 (287)
264 KOG2228 Origin recognition com 96.5 0.045 9.7E-07 54.3 12.2 168 129-299 23-219 (408)
265 PF01695 IstB_IS21: IstB-like 96.5 0.017 3.6E-07 53.7 9.0 74 151-242 47-120 (178)
266 cd01120 RecA-like_NTPases RecA 96.4 0.022 4.7E-07 52.0 9.8 40 153-194 1-40 (165)
267 PRK12727 flagellar biosynthesi 96.4 0.023 4.9E-07 60.9 10.7 89 150-240 349-438 (559)
268 COG0542 clpA ATP-binding subun 96.4 0.011 2.4E-07 66.0 8.6 105 130-242 491-605 (786)
269 PRK05541 adenylylsulfate kinas 96.4 0.012 2.5E-07 54.8 7.6 36 150-187 6-41 (176)
270 PRK09270 nucleoside triphospha 96.4 0.024 5.3E-07 55.2 10.2 30 149-178 31-60 (229)
271 TIGR03499 FlhF flagellar biosy 96.4 0.017 3.7E-07 58.0 9.3 88 150-239 193-281 (282)
272 PLN00020 ribulose bisphosphate 96.4 0.011 2.5E-07 59.9 7.7 30 149-178 146-175 (413)
273 TIGR02236 recomb_radA DNA repa 96.4 0.025 5.5E-07 57.9 10.7 57 151-208 95-155 (310)
274 PF00560 LRR_1: Leucine Rich R 96.4 0.0017 3.7E-08 36.9 1.1 21 486-506 1-21 (22)
275 PRK06921 hypothetical protein; 96.3 0.018 4E-07 57.1 9.2 71 150-239 116-186 (266)
276 PF13504 LRR_7: Leucine rich r 96.3 0.002 4.3E-08 33.9 1.1 17 658-674 1-17 (17)
277 PTZ00035 Rad51 protein; Provis 96.3 0.029 6.2E-07 57.8 10.5 58 151-209 118-179 (337)
278 PLN03186 DNA repair protein RA 96.3 0.02 4.4E-07 58.7 9.3 58 151-209 123-184 (342)
279 COG0464 SpoVK ATPases of the A 96.3 0.089 1.9E-06 57.8 15.0 132 150-301 275-425 (494)
280 PRK12723 flagellar biosynthesi 96.2 0.042 9.2E-07 57.3 11.6 90 150-241 173-265 (388)
281 PF13306 LRR_5: Leucine rich r 96.2 0.011 2.5E-07 51.5 6.4 110 459-582 8-120 (129)
282 PRK08533 flagellar accessory p 96.2 0.033 7.1E-07 54.2 10.1 53 151-208 24-76 (230)
283 KOG0736 Peroxisome assembly fa 96.2 0.25 5.3E-06 54.6 16.8 95 128-242 670-776 (953)
284 PRK15455 PrkA family serine pr 96.2 0.0071 1.5E-07 64.9 5.3 49 129-177 75-129 (644)
285 TIGR02239 recomb_RAD51 DNA rep 96.1 0.026 5.7E-07 57.5 9.3 58 151-209 96-157 (316)
286 TIGR02858 spore_III_AA stage I 96.1 0.04 8.7E-07 54.6 10.3 113 148-270 108-231 (270)
287 cd01121 Sms Sms (bacterial rad 96.1 0.02 4.3E-07 59.7 8.4 85 151-240 82-168 (372)
288 COG1066 Sms Predicted ATP-depe 96.1 0.032 6.9E-07 57.0 9.4 85 151-241 93-179 (456)
289 COG0542 clpA ATP-binding subun 96.1 0.0098 2.1E-07 66.4 6.4 156 129-299 169-346 (786)
290 PRK04301 radA DNA repair and r 96.1 0.038 8.3E-07 56.7 10.5 57 151-208 102-162 (317)
291 COG1419 FlhF Flagellar GTP-bin 96.1 0.06 1.3E-06 55.4 11.4 98 139-239 187-290 (407)
292 PRK12726 flagellar biosynthesi 96.1 0.039 8.5E-07 56.6 10.0 90 150-241 205-296 (407)
293 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.044 9.6E-07 53.6 10.2 48 151-202 21-68 (237)
294 TIGR00554 panK_bact pantothena 96.0 0.036 7.8E-07 55.5 9.5 28 149-176 60-87 (290)
295 cd01394 radB RadB. The archaea 96.0 0.029 6.4E-07 54.2 8.8 42 151-194 19-60 (218)
296 PF07728 AAA_5: AAA domain (dy 96.0 0.013 2.8E-07 52.0 5.9 43 154-201 2-44 (139)
297 PRK06547 hypothetical protein; 96.0 0.0096 2.1E-07 54.8 5.1 35 142-176 6-40 (172)
298 PF00154 RecA: recA bacterial 96.0 0.063 1.4E-06 54.3 11.2 85 151-242 53-143 (322)
299 PRK04296 thymidine kinase; Pro 96.0 0.0077 1.7E-07 56.7 4.5 110 152-269 3-117 (190)
300 KOG0729 26S proteasome regulat 96.0 0.059 1.3E-06 51.4 10.1 92 129-240 176-280 (435)
301 PRK05703 flhF flagellar biosyn 96.0 0.052 1.1E-06 57.7 11.1 87 151-239 221-308 (424)
302 COG0468 RecA RecA/RadA recombi 96.0 0.05 1.1E-06 53.8 10.1 88 151-241 60-152 (279)
303 cd02025 PanK Pantothenate kina 96.0 0.037 8E-07 53.4 9.0 41 153-193 1-41 (220)
304 cd03115 SRP The signal recogni 95.9 0.038 8.3E-07 51.1 8.7 54 153-208 2-56 (173)
305 COG4608 AppF ABC-type oligopep 95.9 0.04 8.6E-07 53.5 8.8 119 151-273 39-175 (268)
306 PRK00771 signal recognition pa 95.9 0.057 1.2E-06 57.4 10.7 59 150-210 94-153 (437)
307 COG1618 Predicted nucleotide k 95.9 0.01 2.2E-07 52.4 4.1 28 152-179 6-33 (179)
308 PRK12724 flagellar biosynthesi 95.9 0.031 6.7E-07 58.3 8.3 84 151-238 223-307 (432)
309 PRK14974 cell division protein 95.8 0.093 2E-06 53.7 11.6 58 150-210 139-198 (336)
310 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.027 5.8E-07 52.7 7.3 24 153-176 1-24 (183)
311 PRK07667 uridine kinase; Provi 95.8 0.012 2.7E-07 55.5 5.0 38 140-177 4-43 (193)
312 COG1102 Cmk Cytidylate kinase 95.8 0.014 3E-07 51.5 4.7 45 153-210 2-46 (179)
313 PRK06835 DNA replication prote 95.8 0.064 1.4E-06 54.9 10.4 39 151-191 183-221 (329)
314 cd01124 KaiC KaiC is a circadi 95.8 0.032 7E-07 52.3 7.7 44 154-201 2-45 (187)
315 PF14532 Sigma54_activ_2: Sigm 95.8 0.0064 1.4E-07 54.0 2.6 44 134-177 2-47 (138)
316 PRK14721 flhF flagellar biosyn 95.8 0.065 1.4E-06 56.4 10.4 87 151-239 191-278 (420)
317 PF13238 AAA_18: AAA domain; P 95.8 0.0085 1.8E-07 52.3 3.3 22 154-175 1-22 (129)
318 PRK06067 flagellar accessory p 95.7 0.065 1.4E-06 52.4 9.8 85 151-240 25-130 (234)
319 PF00485 PRK: Phosphoribulokin 95.7 0.01 2.2E-07 56.2 4.0 26 153-178 1-26 (194)
320 KOG0728 26S proteasome regulat 95.7 0.34 7.3E-06 46.0 13.6 148 132-299 149-331 (404)
321 PRK04328 hypothetical protein; 95.7 0.054 1.2E-06 53.4 9.2 54 150-208 22-75 (249)
322 PRK05439 pantothenate kinase; 95.7 0.085 1.9E-06 53.2 10.6 81 149-231 84-166 (311)
323 PF13481 AAA_25: AAA domain; P 95.7 0.041 8.8E-07 52.0 8.0 50 152-203 33-90 (193)
324 cd01135 V_A-ATPase_B V/A-type 95.7 0.088 1.9E-06 51.8 10.2 92 151-242 69-178 (276)
325 TIGR00064 ftsY signal recognit 95.7 0.094 2E-06 52.3 10.7 57 150-209 71-129 (272)
326 PF12775 AAA_7: P-loop contain 95.7 0.01 2.2E-07 59.2 3.7 87 140-240 23-110 (272)
327 PRK14723 flhF flagellar biosyn 95.6 0.084 1.8E-06 59.5 11.2 88 151-240 185-273 (767)
328 PRK13531 regulatory ATPase Rav 95.6 0.018 4E-07 61.0 5.7 51 130-182 20-70 (498)
329 PRK06995 flhF flagellar biosyn 95.6 0.06 1.3E-06 57.7 9.6 60 151-210 256-316 (484)
330 PF00560 LRR_1: Leucine Rich R 95.6 0.0056 1.2E-07 34.8 1.0 20 659-678 1-20 (22)
331 KOG0727 26S proteasome regulat 95.6 0.091 2E-06 49.7 9.4 151 129-299 154-339 (408)
332 PHA02244 ATPase-like protein 95.6 0.06 1.3E-06 55.1 9.0 35 140-176 110-144 (383)
333 COG0467 RAD55 RecA-superfamily 95.6 0.11 2.4E-06 51.6 11.0 50 150-203 22-71 (260)
334 PF03308 ArgK: ArgK protein; 95.6 0.022 4.8E-07 54.8 5.5 62 139-200 15-78 (266)
335 KOG0744 AAA+-type ATPase [Post 95.6 0.028 6.2E-07 55.2 6.2 28 151-178 177-204 (423)
336 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.6E-07 44.9 3.0 23 153-175 1-23 (69)
337 PF01583 APS_kinase: Adenylyls 95.5 0.021 4.6E-07 51.1 4.9 36 151-188 2-37 (156)
338 PRK05480 uridine/cytidine kina 95.5 0.013 2.9E-07 56.2 3.9 27 149-175 4-30 (209)
339 PF13671 AAA_33: AAA domain; P 95.5 0.013 2.8E-07 52.3 3.6 24 153-176 1-24 (143)
340 COG1703 ArgK Putative periplas 95.5 0.021 4.6E-07 55.8 5.1 61 141-201 39-101 (323)
341 PRK05917 DNA polymerase III su 95.5 0.34 7.4E-06 48.3 13.7 130 139-286 6-154 (290)
342 cd01131 PilT Pilus retraction 95.5 0.029 6.4E-07 53.2 6.1 109 152-270 2-111 (198)
343 cd02117 NifH_like This family 95.5 0.016 3.5E-07 55.7 4.3 26 152-177 1-26 (212)
344 TIGR02655 circ_KaiC circadian 95.5 0.067 1.4E-06 58.3 9.6 85 150-239 262-362 (484)
345 TIGR00235 udk uridine kinase. 95.5 0.014 3.1E-07 55.8 3.9 28 149-176 4-31 (207)
346 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.081 1.8E-06 52.5 9.4 39 151-191 36-74 (259)
347 PF06309 Torsin: Torsin; Inte 95.4 0.029 6.3E-07 47.8 5.2 44 131-174 26-76 (127)
348 cd00544 CobU Adenosylcobinamid 95.4 0.079 1.7E-06 48.6 8.5 80 154-239 2-82 (169)
349 PRK13765 ATP-dependent proteas 95.4 0.034 7.3E-07 61.9 7.1 80 126-209 27-106 (637)
350 PF00006 ATP-synt_ab: ATP synt 95.4 0.055 1.2E-06 51.6 7.6 86 152-241 16-116 (215)
351 PRK08233 hypothetical protein; 95.4 0.014 3.1E-07 54.5 3.6 26 151-176 3-28 (182)
352 COG0194 Gmk Guanylate kinase [ 95.4 0.079 1.7E-06 48.3 8.0 25 151-175 4-28 (191)
353 PRK11823 DNA repair protein Ra 95.4 0.051 1.1E-06 58.3 8.1 85 151-240 80-166 (446)
354 PTZ00301 uridine kinase; Provi 95.3 0.015 3.3E-07 55.3 3.7 26 151-176 3-28 (210)
355 PRK10463 hydrogenase nickel in 95.3 0.19 4.1E-06 50.0 11.3 94 142-241 95-195 (290)
356 COG3640 CooC CO dehydrogenase 95.3 0.034 7.5E-07 52.3 5.7 50 153-210 2-51 (255)
357 PRK13236 nitrogenase reductase 95.3 0.021 4.6E-07 57.9 4.8 45 148-194 3-47 (296)
358 PRK13230 nitrogenase reductase 95.3 0.02 4.4E-07 57.6 4.6 42 152-195 2-43 (279)
359 PRK09519 recA DNA recombinatio 95.3 0.068 1.5E-06 60.4 8.9 83 151-240 60-148 (790)
360 TIGR00959 ffh signal recogniti 95.3 0.13 2.8E-06 54.5 10.6 59 150-209 98-157 (428)
361 PRK06762 hypothetical protein; 95.2 0.017 3.7E-07 53.1 3.5 25 151-175 2-26 (166)
362 COG1428 Deoxynucleoside kinase 95.2 0.038 8.3E-07 51.3 5.7 47 151-202 4-50 (216)
363 COG0572 Udk Uridine kinase [Nu 95.2 0.018 4E-07 54.1 3.7 29 150-178 7-35 (218)
364 cd03247 ABCC_cytochrome_bd The 95.2 0.069 1.5E-06 49.7 7.6 26 151-176 28-53 (178)
365 TIGR00390 hslU ATP-dependent p 95.2 0.062 1.4E-06 55.9 7.8 48 130-177 12-73 (441)
366 PRK15429 formate hydrogenlyase 95.2 0.11 2.3E-06 59.6 10.5 61 129-191 375-437 (686)
367 PF13306 LRR_5: Leucine rich r 95.2 0.055 1.2E-06 47.1 6.5 114 440-567 12-129 (129)
368 KOG0473 Leucine-rich repeat pr 95.2 0.00067 1.5E-08 63.0 -5.8 83 461-545 40-123 (326)
369 KOG3347 Predicted nucleotide k 95.2 0.021 4.5E-07 49.6 3.4 37 151-194 7-43 (176)
370 cd03223 ABCD_peroxisomal_ALDP 95.2 0.15 3.3E-06 46.7 9.6 26 151-176 27-52 (166)
371 PF00910 RNA_helicase: RNA hel 95.2 0.016 3.4E-07 48.8 2.8 24 154-177 1-24 (107)
372 PRK08972 fliI flagellum-specif 95.1 0.1 2.2E-06 54.9 9.2 89 150-242 161-264 (444)
373 cd03214 ABC_Iron-Siderophores_ 95.1 0.092 2E-06 48.9 8.2 116 151-271 25-161 (180)
374 TIGR00416 sms DNA repair prote 95.1 0.082 1.8E-06 56.8 8.8 85 151-240 94-180 (454)
375 PF02562 PhoH: PhoH-like prote 95.1 0.028 6.1E-07 52.9 4.5 125 134-267 4-155 (205)
376 PRK10867 signal recognition pa 95.1 0.13 2.7E-06 54.7 9.9 28 150-177 99-126 (433)
377 PRK06851 hypothetical protein; 95.1 0.25 5.5E-06 51.0 11.7 44 148-192 211-254 (367)
378 cd02028 UMPK_like Uridine mono 95.0 0.053 1.2E-06 50.4 6.3 25 153-177 1-25 (179)
379 cd00561 CobA_CobO_BtuR ATP:cor 95.0 0.1 2.2E-06 47.0 7.8 115 152-268 3-138 (159)
380 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.1 2.3E-06 50.5 8.2 23 152-174 31-53 (254)
381 cd01125 repA Hexameric Replica 95.0 0.15 3.3E-06 49.9 9.7 87 153-239 3-120 (239)
382 PRK13232 nifH nitrogenase redu 95.0 0.026 5.7E-07 56.6 4.4 40 152-193 2-41 (273)
383 PF12780 AAA_8: P-loop contain 95.0 0.079 1.7E-06 52.5 7.6 78 138-240 19-99 (268)
384 PRK03839 putative kinase; Prov 95.0 0.022 4.8E-07 53.1 3.6 25 153-177 2-26 (180)
385 TIGR01360 aden_kin_iso1 adenyl 95.0 0.023 5E-07 53.4 3.7 26 150-175 2-27 (188)
386 PF07726 AAA_3: ATPase family 95.0 0.026 5.7E-07 48.2 3.5 25 154-178 2-26 (131)
387 PF13245 AAA_19: Part of AAA d 95.0 0.072 1.6E-06 41.4 5.8 26 150-175 9-35 (76)
388 PRK08149 ATP synthase SpaL; Va 94.9 0.088 1.9E-06 55.5 8.2 89 150-242 150-253 (428)
389 PRK13235 nifH nitrogenase redu 94.9 0.029 6.2E-07 56.4 4.5 41 152-194 2-42 (274)
390 PRK12597 F0F1 ATP synthase sub 94.9 0.14 3.1E-06 54.4 9.8 90 151-241 143-248 (461)
391 PF13504 LRR_7: Leucine rich r 94.9 0.017 3.6E-07 30.4 1.4 16 486-501 2-17 (17)
392 cd01132 F1_ATPase_alpha F1 ATP 94.9 0.15 3.2E-06 50.2 9.0 88 151-242 69-173 (274)
393 cd02027 APSK Adenosine 5'-phos 94.9 0.12 2.6E-06 46.5 7.9 24 153-176 1-24 (149)
394 PRK11608 pspF phage shock prot 94.9 0.07 1.5E-06 54.9 7.1 46 130-175 6-53 (326)
395 PF03205 MobB: Molybdopterin g 94.8 0.026 5.6E-07 50.0 3.4 39 152-191 1-39 (140)
396 TIGR00764 lon_rel lon-related 94.8 0.072 1.6E-06 59.5 7.6 79 127-209 15-93 (608)
397 PRK08927 fliI flagellum-specif 94.8 0.19 4.1E-06 53.1 10.2 89 150-242 157-260 (442)
398 PF07724 AAA_2: AAA domain (Cd 94.8 0.029 6.3E-07 51.6 3.8 43 151-194 3-45 (171)
399 PRK06002 fliI flagellum-specif 94.8 0.15 3.4E-06 53.8 9.5 89 151-242 165-266 (450)
400 KOG0652 26S proteasome regulat 94.8 1.2 2.5E-05 42.8 14.2 53 125-177 166-231 (424)
401 COG0541 Ffh Signal recognition 94.8 2.3 5E-05 44.3 17.5 59 150-210 99-158 (451)
402 COG0488 Uup ATPase components 94.8 0.34 7.3E-06 52.9 12.4 130 152-285 349-511 (530)
403 PF03215 Rad17: Rad17 cell cyc 94.8 0.062 1.3E-06 58.5 6.8 59 127-189 16-79 (519)
404 PRK04040 adenylate kinase; Pro 94.8 0.027 5.9E-07 52.8 3.5 25 152-176 3-27 (188)
405 PF08433 KTI12: Chromatin asso 94.8 0.062 1.3E-06 53.4 6.2 26 152-177 2-27 (270)
406 COG1224 TIP49 DNA helicase TIP 94.7 0.066 1.4E-06 53.5 6.1 56 128-183 37-97 (450)
407 TIGR00150 HI0065_YjeE ATPase, 94.7 0.066 1.4E-06 46.6 5.5 27 151-177 22-48 (133)
408 PRK00625 shikimate kinase; Pro 94.7 0.028 6E-07 51.8 3.4 24 153-176 2-25 (173)
409 KOG3354 Gluconate kinase [Carb 94.7 0.18 3.8E-06 44.2 7.9 66 152-227 13-78 (191)
410 PF00625 Guanylate_kin: Guanyl 94.7 0.047 1E-06 51.1 5.0 38 151-190 2-39 (183)
411 COG4618 ArpD ABC-type protease 94.7 0.068 1.5E-06 56.0 6.4 25 152-176 363-387 (580)
412 TIGR01069 mutS2 MutS2 family p 94.7 0.097 2.1E-06 60.1 8.3 177 150-349 321-520 (771)
413 TIGR02322 phosphon_PhnN phosph 94.6 0.029 6.3E-07 52.3 3.4 25 152-176 2-26 (179)
414 cd02024 NRK1 Nicotinamide ribo 94.6 0.025 5.5E-07 52.6 2.9 23 153-175 1-23 (187)
415 PRK13768 GTPase; Provisional 94.6 0.19 4E-06 49.7 9.2 36 152-189 3-38 (253)
416 cd03228 ABCC_MRP_Like The MRP 94.6 0.084 1.8E-06 48.8 6.4 26 151-176 28-53 (171)
417 cd02023 UMPK Uridine monophosp 94.6 0.024 5.3E-07 53.8 2.9 23 153-175 1-23 (198)
418 PF00158 Sigma54_activat: Sigm 94.6 0.16 3.4E-06 46.7 8.0 44 133-176 2-47 (168)
419 PF10236 DAP3: Mitochondrial r 94.6 3 6.4E-05 42.6 18.0 47 280-326 258-306 (309)
420 PRK10751 molybdopterin-guanine 94.6 0.036 7.8E-07 50.7 3.7 29 150-178 5-33 (173)
421 COG0465 HflB ATP-dependent Zn 94.6 0.33 7.2E-06 53.0 11.5 171 129-323 149-355 (596)
422 CHL00081 chlI Mg-protoporyphyr 94.6 0.054 1.2E-06 55.6 5.4 50 127-176 14-63 (350)
423 PF06745 KaiC: KaiC; InterPro 94.6 0.1 2.2E-06 50.7 7.2 86 151-240 19-125 (226)
424 KOG1532 GTPase XAB1, interacts 94.6 0.042 9E-07 52.7 4.1 62 150-211 18-88 (366)
425 PF03193 DUF258: Protein of un 94.6 0.056 1.2E-06 48.7 4.8 34 139-175 26-59 (161)
426 COG1126 GlnQ ABC-type polar am 94.6 0.038 8.3E-07 51.4 3.8 36 151-189 28-63 (240)
427 TIGR00750 lao LAO/AO transport 94.6 0.13 2.7E-06 52.4 8.1 31 148-178 31-61 (300)
428 PRK09099 type III secretion sy 94.5 0.12 2.6E-06 54.8 8.0 90 150-242 162-265 (441)
429 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.3 6.4E-06 47.6 10.4 53 151-208 20-72 (229)
430 TIGR02030 BchI-ChlI magnesium 94.5 0.061 1.3E-06 55.2 5.7 47 129-175 3-49 (337)
431 PRK09280 F0F1 ATP synthase sub 94.5 0.24 5.1E-06 52.7 10.1 91 151-242 144-250 (463)
432 PF02374 ArsA_ATPase: Anion-tr 94.5 0.058 1.3E-06 54.8 5.5 46 152-199 2-47 (305)
433 PRK00131 aroK shikimate kinase 94.5 0.037 8.1E-07 51.2 3.8 26 151-176 4-29 (175)
434 KOG0738 AAA+-type ATPase [Post 94.5 0.21 4.5E-06 50.7 9.0 48 131-178 213-272 (491)
435 KOG0473 Leucine-rich repeat pr 94.5 0.0011 2.4E-08 61.6 -6.2 82 440-521 42-124 (326)
436 COG0003 ArsA Predicted ATPase 94.5 0.066 1.4E-06 54.3 5.8 49 151-201 2-50 (322)
437 cd01134 V_A-ATPase_A V/A-type 94.5 0.25 5.4E-06 50.2 9.7 87 151-241 157-265 (369)
438 TIGR01040 V-ATPase_V1_B V-type 94.5 0.25 5.4E-06 52.2 10.1 91 151-241 141-258 (466)
439 KOG4341 F-box protein containi 94.5 0.0027 5.9E-08 64.3 -4.1 224 440-671 138-385 (483)
440 PRK01184 hypothetical protein; 94.5 0.21 4.5E-06 46.7 8.8 22 152-174 2-23 (184)
441 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.19 4.2E-06 53.2 9.3 91 151-242 138-244 (449)
442 PRK07276 DNA polymerase III su 94.5 1.5 3.3E-05 43.9 15.2 137 136-296 8-172 (290)
443 PRK06217 hypothetical protein; 94.4 0.033 7.2E-07 52.1 3.3 25 153-177 3-27 (183)
444 KOG0924 mRNA splicing factor A 94.4 0.13 2.8E-06 55.6 7.8 119 141-267 363-509 (1042)
445 cd00227 CPT Chloramphenicol (C 94.4 0.036 7.8E-07 51.4 3.5 25 152-176 3-27 (175)
446 cd01136 ATPase_flagellum-secre 94.4 0.27 5.9E-06 50.0 9.9 88 151-242 69-171 (326)
447 PF05970 PIF1: PIF1-like helic 94.4 0.11 2.4E-06 54.3 7.5 101 137-242 8-114 (364)
448 PRK05922 type III secretion sy 94.4 0.17 3.6E-06 53.5 8.6 89 150-242 156-259 (434)
449 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.043 9.3E-07 52.6 3.9 24 151-174 29-52 (213)
450 COG4088 Predicted nucleotide k 94.4 0.029 6.2E-07 51.6 2.5 27 152-178 2-28 (261)
451 PRK00889 adenylylsulfate kinas 94.4 0.045 9.7E-07 50.8 4.0 28 150-177 3-30 (175)
452 TIGR03575 selen_PSTK_euk L-ser 94.4 0.12 2.6E-06 52.9 7.3 37 154-191 2-38 (340)
453 PF06068 TIP49: TIP49 C-termin 94.3 0.073 1.6E-06 54.0 5.6 53 129-181 23-80 (398)
454 TIGR00708 cobA cob(I)alamin ad 94.3 0.25 5.4E-06 45.1 8.5 116 151-268 5-140 (173)
455 PF05659 RPW8: Arabidopsis bro 94.3 0.35 7.6E-06 42.9 9.2 95 2-103 3-113 (147)
456 PRK09435 membrane ATPase/prote 94.3 0.4 8.7E-06 49.0 11.0 51 148-198 53-103 (332)
457 PTZ00185 ATPase alpha subunit; 94.3 0.38 8.2E-06 51.4 10.9 92 151-242 189-301 (574)
458 KOG0726 26S proteasome regulat 94.3 0.32 7E-06 47.3 9.4 54 125-178 180-246 (440)
459 COG0714 MoxR-like ATPases [Gen 94.3 0.11 2.5E-06 53.6 7.2 63 132-201 26-88 (329)
460 COG4240 Predicted kinase [Gene 94.3 0.24 5.2E-06 46.4 8.3 82 148-230 47-133 (300)
461 PRK05201 hslU ATP-dependent pr 94.3 0.14 3E-06 53.5 7.5 48 130-177 15-76 (443)
462 COG2019 AdkA Archaeal adenylat 94.3 0.042 9E-07 48.8 3.2 25 151-175 4-28 (189)
463 PRK13234 nifH nitrogenase redu 94.3 0.055 1.2E-06 54.9 4.7 43 150-194 3-45 (295)
464 TIGR03263 guanyl_kin guanylate 94.3 0.035 7.7E-07 51.7 3.1 24 152-175 2-25 (180)
465 PRK07594 type III secretion sy 94.2 0.12 2.6E-06 54.5 7.2 89 150-242 154-257 (433)
466 cd01878 HflX HflX subfamily. 94.2 0.15 3.3E-06 48.6 7.5 26 150-175 40-65 (204)
467 PRK06936 type III secretion sy 94.2 0.26 5.6E-06 52.1 9.6 89 150-242 161-264 (439)
468 TIGR01041 ATP_syn_B_arch ATP s 94.2 0.3 6.5E-06 52.1 10.2 92 151-242 141-250 (458)
469 PF13086 AAA_11: AAA domain; P 94.2 0.1 2.2E-06 50.8 6.4 50 153-202 19-73 (236)
470 cd02021 GntK Gluconate kinase 94.2 0.036 7.8E-07 49.9 2.9 23 153-175 1-23 (150)
471 PLN02165 adenylate isopentenyl 94.2 0.06 1.3E-06 54.5 4.6 30 147-176 39-68 (334)
472 PRK10416 signal recognition pa 94.2 0.59 1.3E-05 47.7 11.9 38 150-189 113-150 (318)
473 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.079 1.7E-06 53.7 5.4 76 130-210 61-149 (358)
474 COG0563 Adk Adenylate kinase a 94.2 0.041 9E-07 50.9 3.2 24 153-176 2-25 (178)
475 TIGR00073 hypB hydrogenase acc 94.1 0.055 1.2E-06 51.7 4.2 32 145-176 16-47 (207)
476 PRK05800 cobU adenosylcobinami 94.1 0.16 3.5E-06 46.7 7.0 45 153-203 3-47 (170)
477 COG1124 DppF ABC-type dipeptid 94.1 0.057 1.2E-06 51.3 4.1 26 151-176 33-58 (252)
478 cd02029 PRK_like Phosphoribulo 94.1 0.22 4.8E-06 48.7 8.2 25 153-177 1-25 (277)
479 TIGR01039 atpD ATP synthase, F 94.1 0.32 6.9E-06 51.6 10.0 91 151-242 143-249 (461)
480 PRK12678 transcription termina 94.1 0.17 3.8E-06 54.5 8.1 91 151-242 416-515 (672)
481 PF08477 Miro: Miro-like prote 94.1 0.046 9.9E-07 46.9 3.3 24 154-177 2-25 (119)
482 cd02020 CMPK Cytidine monophos 94.1 0.041 9E-07 49.2 3.1 24 153-176 1-24 (147)
483 PF13479 AAA_24: AAA domain 94.1 0.15 3.3E-06 48.9 7.2 30 153-192 5-34 (213)
484 PRK14531 adenylate kinase; Pro 94.1 0.2 4.3E-06 46.9 7.7 25 152-176 3-27 (183)
485 PRK13947 shikimate kinase; Pro 94.1 0.045 9.8E-07 50.5 3.3 25 153-177 3-27 (171)
486 PRK00409 recombination and DNA 94.1 0.28 6E-06 56.6 10.3 178 149-349 325-525 (782)
487 TIGR03498 FliI_clade3 flagella 94.0 0.22 4.8E-06 52.5 8.7 89 151-242 140-242 (418)
488 PRK00300 gmk guanylate kinase; 94.0 0.045 9.8E-07 52.3 3.4 26 151-176 5-30 (205)
489 cd00071 GMPK Guanosine monopho 94.0 0.04 8.6E-07 48.7 2.7 24 153-176 1-24 (137)
490 PRK05688 fliI flagellum-specif 94.0 0.34 7.3E-06 51.4 10.0 88 151-242 168-270 (451)
491 PTZ00088 adenylate kinase 1; P 94.0 0.11 2.4E-06 50.3 6.0 23 154-176 9-31 (229)
492 PRK13407 bchI magnesium chelat 94.0 0.079 1.7E-06 54.2 5.2 48 128-175 6-53 (334)
493 TIGR01650 PD_CobS cobaltochela 94.0 0.23 5E-06 50.3 8.3 61 131-198 46-106 (327)
494 KOG4341 F-box protein containi 94.0 0.0032 7E-08 63.7 -4.7 152 440-597 216-383 (483)
495 PRK13949 shikimate kinase; Pro 94.0 0.053 1.1E-06 49.9 3.6 25 152-176 2-26 (169)
496 PRK05022 anaerobic nitric oxid 94.0 0.16 3.5E-06 55.9 7.9 62 129-192 186-249 (509)
497 COG1763 MobB Molybdopterin-gua 94.0 0.052 1.1E-06 48.9 3.3 37 151-189 2-38 (161)
498 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.58 1.3E-05 57.4 12.7 27 151-177 1630-1656(2281)
499 COG0529 CysC Adenylylsulfate k 93.9 0.095 2.1E-06 47.2 4.8 32 147-178 19-50 (197)
500 KOG2170 ATPase of the AAA+ sup 93.9 0.22 4.8E-06 48.8 7.6 98 131-242 83-190 (344)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-74 Score=642.50 Aligned_cols=511 Identities=29% Similarity=0.478 Sum_probs=405.8
Q ss_pred hhhhHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHhhhHHhh-----------------ccccccCCC-CChhHHHHH
Q 005747 28 RDKRKVDEAERKGEEIEENVENWLARANNVIEDADEFTNDEATA-----------------NKHCFKGLC-PNLKTRCQL 89 (679)
Q Consensus 28 ~i~~~l~~a~~~~~~~~~~v~~Wl~~l~~~~yd~ed~ld~~~~~-----------------~~~~~~~~~-~~~~~r~~~ 89 (679)
.++.++++|+.++.. ...+..|...+++++|++||.++.+... +.-|+.+.| ..+..-+.+
T Consensus 39 ~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~ 117 (889)
T KOG4658|consen 39 ALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKY 117 (889)
T ss_pred HHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhH
Confidence 899999999988753 6888999999999999999998754211 112333333 233444667
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCC-CccccCCCCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH
Q 005747 90 SKEAVRLMEAIVKVREAGRFDNISYSIIP-EDNLLMPNKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLA 168 (679)
Q Consensus 90 ~~~i~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa 168 (679)
++++-++.+.++.+..++.|..+.....| ......|...... +|.+..++++.+.|.+++..+++|+||||+||||||
T Consensus 118 ~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~ 196 (889)
T KOG4658|consen 118 GKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLA 196 (889)
T ss_pred HHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHH
Confidence 77777777777777666566555432111 2222333333334 899999999999999888899999999999999999
Q ss_pred HHHHHHhc-cCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccc---hhHHHHHHHHHHHcCCceEEEEecCCCccc
Q 005747 169 KEVARRAE-NDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEES---ESGRARRLHDRLKKEKRILVILDNIWGNLD 244 (679)
Q Consensus 169 ~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~---~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~ 244 (679)
++++|+.. ++++||.++||.||+.++..+++++|++.++....... ....+..+.+.|. +|||+|||||||+..+
T Consensus 197 ~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~d 275 (889)
T KOG4658|consen 197 RQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVD 275 (889)
T ss_pred HHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEeccccccc
Confidence 99999988 89999999999999999999999999999987443322 2455666666666 7999999999999999
Q ss_pred hhhcCCCCCCCCCCcEEEEeecCcchhcccCCCcceEEecCCChHHHHHHHHHHhCCC--CCCccHHHHHHHHHHHcCCC
Q 005747 245 LKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDY--VEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 245 ~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~I~~~~~gl 322 (679)
|+.++.++|...+||+|++|||+++|+...+++...++++.|+.+|||.||.+.++.. ...+.++++|++++++|+|+
T Consensus 276 w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GL 355 (889)
T KOG4658|consen 276 WDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGL 355 (889)
T ss_pred HHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999987768889999999999999999999999854 33355899999999999999
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChhHHHHHHHHhccccc---CChhHHH
Q 005747 323 PVAIVTVATALRDNNSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLIGYTAI---ASIDDLL 399 (679)
Q Consensus 323 Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~---~~~~~li 399 (679)
|||++++|+.|+.+++..+|+++.+.+......+..++.+.+++++++||+.||++ +|.||+|||+||+ |+++.|+
T Consensus 356 PLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 356 PLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHH
Confidence 99999999999998899999999999988766666677899999999999999965 9999999999996 9999999
Q ss_pred Hhhhccccccc---------------------------C-----CcEEeehhHHHHHHHHhh-----cccceeeec----
Q 005747 400 MYGMGMGYFKK---------------------------K-----GLFSMHDVVRDVAISIAS-----TEQNVFSAT---- 438 (679)
Q Consensus 400 ~~w~~~g~~~~---------------------------~-----~~~~mHdlv~~~~~~~~~-----~~~~~~~~~---- 438 (679)
.+|+||||+.. . .+|.|||+||++|.++++ .++.+....
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~ 514 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS 514 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcc
Confidence 99999998854 1 689999999999999999 555444322
Q ss_pred ---C--------------------------CceEEEEeeccc--CCCCCcc-ccCCCCCCEEEcCCCC-CCC-chhhcCC
Q 005747 439 ---E--------------------------EQVRVINVSYMN--LLSLPSS-LGLLSNLQTLSLYNCK-LLD-ITVIRDL 484 (679)
Q Consensus 439 ---~--------------------------~~L~~L~l~~n~--l~~lp~~-~~~l~~L~~L~L~~n~-l~~-~~~~~~l 484 (679)
. +.|++|-+.+|. +..++.. |..++.|++|||++|. +.. |..+++|
T Consensus 515 ~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred ccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 0 446666666654 4444433 5567777777777765 344 5667777
Q ss_pred CCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCC
Q 005747 485 KKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPR 543 (679)
Q Consensus 485 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n 543 (679)
-+||||+|+++.|+.+|.++++|+.|.+|++..+.....+| ++...|++|++|.+...
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecc
Confidence 77777777777777777777777777777777766555553 33556777777777654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-56 Score=529.56 Aligned_cols=447 Identities=23% Similarity=0.320 Sum_probs=328.8
Q ss_pred CCcccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc---CCC---------
Q 005747 127 KDYEAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV---SES--------- 192 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~--------- 192 (679)
.+..+++|+++.++++..++. .+++++|+||||||+||||||+++|+.... .|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccc
Confidence 345678999999999999885 567899999999999999999999998764 4988888742 111
Q ss_pred --cC-HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcc
Q 005747 193 --QD-IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLD 269 (679)
Q Consensus 193 --~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 269 (679)
++ ...++++++..+....... ......+.+.+. ++|+||||||||+..+|+.+.....+.++||+||||||++.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 1234445554432211111 011234555555 78999999999999999998877777789999999999999
Q ss_pred hhcccCCCcceEEecCCChHHHHHHHHHHhCCCC-CCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHH
Q 005747 270 TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYV-EGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQ 348 (679)
Q Consensus 270 v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~ 348 (679)
++. ..+..++|+++.|++++||+||++.||... ++.++.+++++|+++|+|+|||++++|+.|++ ++..+|+.++++
T Consensus 336 vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 874 355678999999999999999999998543 45568899999999999999999999999998 689999999999
Q ss_pred hcCCCCCCcCCchhhHHHHHHhhhcCCChhHHHHHHHHhccccc-CChhHHHHhhhccccccc----------------C
Q 005747 349 LRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLIGYTAI-ASIDDLLMYGMGMGYFKK----------------K 411 (679)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~-~~~~~li~~w~~~g~~~~----------------~ 411 (679)
++... ...+..+|++||+.|+++..|.||+++|+|+. ...+. +..|.+.+.... .
T Consensus 414 L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~~~~l~~L~~ksLi~~~~ 485 (1153)
T PLN03210 414 LRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDVNIGLKNLVDKSLIHVRE 485 (1153)
T ss_pred HHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCchhChHHHHhcCCEEEcC
Confidence 86532 35689999999999987547999999999986 44443 444544432211 4
Q ss_pred CcEEeehhHHHHHHHHhhccc-------ceeeecC-------------------------------------CceEEEEe
Q 005747 412 GLFSMHDVVRDVAISIASTEQ-------NVFSATE-------------------------------------EQVRVINV 447 (679)
Q Consensus 412 ~~~~mHdlv~~~~~~~~~~~~-------~~~~~~~-------------------------------------~~L~~L~l 447 (679)
..+.|||++|++|++++.++. +.+...+ .+|+.|.+
T Consensus 486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 679999999999999986542 1111100 45666666
Q ss_pred ecccCC-------CCCccccCCC-CCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 448 SYMNLL-------SLPSSLGLLS-NLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 448 ~~n~l~-------~lp~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
.++... .+|..|..++ +|+.|++.+|.++.++.-..+.+|++|++++|.++.+|.++..+++|+.|+|++|.
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 544221 3455555553 47777777777766444335678888888888888888777788888888888776
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEe-ecCCCCCCcccccccceeEEEEcC
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTLPRGLFLEKLERYKILIGG 597 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~lp~~~~l~~L~~L~l~~~~ 597 (679)
.++.+|. ++.+++|+.|++++|.. ...+|..++++++|+.|++++ +.++.+|..+.+++|+.|.+++|.
T Consensus 646 ~l~~ip~--ls~l~~Le~L~L~~c~~-------L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 646 NLKEIPD--LSMATNLETLKLSDCSS-------LVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CcCcCCc--cccCCcccEEEecCCCC-------ccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 6777774 67778888888887655 345677777788888888875 456677766666777777766553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.5e-43 Score=355.38 Aligned_cols=273 Identities=30% Similarity=0.512 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC-
Q 005747 135 RMSILNEITDALKN--GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFD- 211 (679)
Q Consensus 135 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~- 211 (679)
|+.++++|.++|.+ ++.++|+|+|+||+||||||+.++++...+++|+.++|+.++...+..+++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999997777889999999999999999999999999988743
Q ss_pred ---ccchhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhcccCCCcceEEecCCCh
Q 005747 212 ---EESESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSVSFLKE 288 (679)
Q Consensus 212 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~ 288 (679)
..+.......+.+.+. ++++||||||||+...|+.+...++....||+||||||+..++.........+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2234445666666665 679999999999999999988888777789999999999888754333367999999999
Q ss_pred HHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHHhcCCCCCCcCCchhhHHH
Q 005747 289 EEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQLRRPSSTNLMNVQPTAYK 366 (679)
Q Consensus 289 ~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 366 (679)
++|++||.+.++... ..+..++.+++|+++|+|+|||++++|++|+.+.+..+|..+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998543 3455578899999999999999999999997756789999999887654422 1124688999
Q ss_pred HHHhhhcCCChhHHHHHHHHhccccc---CChhHHHHhhhccccccc
Q 005747 367 AIKLSYDKLAGEELKNIFLLIGYTAI---ASIDDLLMYGMGMGYFKK 410 (679)
Q Consensus 367 ~l~~sy~~L~~~~lk~cfl~~s~fp~---~~~~~li~~w~~~g~~~~ 410 (679)
++.+||+.||++ +|.||+|||+||. |+.+.++++|+++|++++
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999997 9999999999995 889999999999999864
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3e-21 Score=196.12 Aligned_cols=225 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred ceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEecc
Q 005747 441 QVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLR 516 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~ 516 (679)
+++.|+|++|.|+.+. ..|..+.+|.+|.|+.|+++.+ ..|.+|++|+.|+|..|+|..+ ...+..|++|+.|.|.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 4444444444444332 1244444444444444444441 2233444444444444444432 2234444444444444
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
.|. +..+.+++|..|.++++|+|..|++. ..-..++.+|+.|+.|++|+|.|..+.... +.++|+.|+++
T Consensus 254 rN~-I~kL~DG~Fy~l~kme~l~L~~N~l~-------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 254 RND-ISKLDDGAFYGLEKMEHLNLETNRLQ-------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hcC-cccccCcceeeecccceeecccchhh-------hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 443 34444455555566666666666552 233456677777777777777777554433 67777777777
Q ss_pred EcCcccccccc----ccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcC
Q 005747 595 IGGVWGWEYAD----IWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHL 670 (679)
Q Consensus 595 ~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l 670 (679)
+|.+..++... ..++.|.|+.|......++.+..+.+|+.|+|++|.+...-+-... .+.++++|+.|++.||+|
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~-~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV-AFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh-hhccchhhhheeecCcee
Confidence 77777765433 2556666777666666666677777777777777663211111111 134456666666666666
Q ss_pred ccCC
Q 005747 671 TLNP 674 (679)
Q Consensus 671 ~~lp 674 (679)
..+|
T Consensus 405 k~I~ 408 (873)
T KOG4194|consen 405 KSIP 408 (873)
T ss_pred eecc
Confidence 5554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=9.9e-22 Score=200.76 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=156.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~ 517 (679)
+.|++||||+|++.++|..+...+++-+|+|++|+|..+ +-+-+|..|-+||||+|++..+|+.+..|.+|++|+|++
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 567888888888888888888888888888888888774 336677888888888888888888888888888888888
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEc
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIG 596 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~ 596 (679)
|.+. .+.-..+-.|++|+.|++++.+-+ ...+|.++..|.||..+|+|+|++..+|.-+ .+.+|+.|+++.|
T Consensus 183 NPL~-hfQLrQLPsmtsL~vLhms~TqRT------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 183 NPLN-HFQLRQLPSMTSLSVLHMSNTQRT------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred Chhh-HHHHhcCccchhhhhhhcccccch------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 7632 222111334566777777764432 2356788888888888888888888888877 8888888888888
Q ss_pred Cccccc---cccccccEEEEecCccccchHHHHHHhcccceeeccccccc----------------------cccccccc
Q 005747 597 GVWGWE---YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEER----------------------DVNYFVNE 651 (679)
Q Consensus 597 ~~~~~~---~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~----------------------~l~~i~~~ 651 (679)
.+..+. .....+.+|+++.|.....|..+-. +++|+.|++.+|+.+ .++-+|..
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhccchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 776653 2334566666666555555544332 355555555544411 23344444
Q ss_pred cCcCCCCCccEEEEecCcCccCCCCC
Q 005747 652 LDKVGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 652 l~~~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
+ ..++.|+.|.|+.|+|-++|+.|
T Consensus 335 l--cRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 335 L--CRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred h--hhhHHHHHhcccccceeechhhh
Confidence 4 55678888888888888888765
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=9.4e-20 Score=216.76 Aligned_cols=149 Identities=24% Similarity=0.342 Sum_probs=74.3
Q ss_pred ceEEEEeecccCC-CCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEecc
Q 005747 441 QVRVINVSYMNLL-SLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 441 ~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l~ 516 (679)
+|++|++++|.+. .+|..++++++|++|+|++|.+.. |..++++++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 4555555555554 344445555555555555555443 344555555555555555544 345555555555555555
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC-CCCCcc-cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TLPRGL-FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~-~l~~L~~L~l~ 594 (679)
+|.+.+.+|.. ++++++|++|++++|.+ .+..|..++++++|+.|++++|.+. .+|..+ .+++|+.|+++
T Consensus 221 ~n~l~~~~p~~-l~~l~~L~~L~L~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 221 YNNLSGEIPYE-IGGLTSLNHLDLVYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CCccCCcCChh-HhcCCCCCEEECcCcee-------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 55544444444 45555555555555544 3344444455555555555544443 333333 44444444444
Q ss_pred EcC
Q 005747 595 IGG 597 (679)
Q Consensus 595 ~~~ 597 (679)
+|.
T Consensus 293 ~n~ 295 (968)
T PLN00113 293 DNS 295 (968)
T ss_pred CCe
Confidence 443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-20 Score=191.38 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=106.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~ 516 (679)
++|+.+++..|.++.+|.......+|+.|+|.+|.|+.+ +.+.-++.||.||||.|.|+++|. ++..-.++++|+|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 455555555555555554433444455555555555543 334455555555555555555443 23333445555555
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
+|. ++.+..+.|..+.+|-.|.|+.|.++ ...+..|.+|++|+.|+|..|.|..+.... ++++|+.|.+.
T Consensus 182 ~N~-It~l~~~~F~~lnsL~tlkLsrNrit-------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 182 SNR-ITTLETGHFDSLNSLLTLKLSRNRIT-------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred ccc-ccccccccccccchheeeecccCccc-------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 544 33333334555555555555555552 222344444555555555555554332211 44555555554
Q ss_pred EcCccccccc----cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcC
Q 005747 595 IGGVWGWEYA----DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHL 670 (679)
Q Consensus 595 ~~~~~~~~~~----~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l 670 (679)
.|++..+... ......+.|..|.......+....+++|+.|+||+|.|..+.--.+ .-.++|+.|+|++|+|
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W----sftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW----SFTQKLKELDLSSNRI 329 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh----hhcccceeEecccccc
Confidence 4444443222 1234444454444444333333344555555555555433321111 2235555555555555
Q ss_pred ccCCCC
Q 005747 671 TLNPAE 676 (679)
Q Consensus 671 ~~lp~~ 676 (679)
+.+|++
T Consensus 330 ~~l~~~ 335 (873)
T KOG4194|consen 330 TRLDEG 335 (873)
T ss_pred ccCChh
Confidence 555543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=2.4e-19 Score=213.33 Aligned_cols=202 Identities=23% Similarity=0.278 Sum_probs=111.1
Q ss_pred CCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEeccCCcCccccChhhhcCCccccee
Q 005747 462 LSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEEL 538 (679)
Q Consensus 462 l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L 538 (679)
+++|++|+|++|.++. +..++++++|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEE
Confidence 4444444444444433 334555555555555555544 44555555555555555555544455544 4555555555
Q ss_pred ecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC-CCCCcc-cccccceeEEEEcCccccc----cccccccEEE
Q 005747 539 YMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TLPRGL-FLEKLERYKILIGGVWGWE----YADIWCREFK 612 (679)
Q Consensus 539 ~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~-~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~ 612 (679)
++++|.+ .+.+|..++++++|++|++++|.++ .+|..+ .+++|+.|+++.|.+.... .....++.|.
T Consensus 218 ~L~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 218 YLGYNNL-------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred ECcCCcc-------CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 5555555 4455666666666666666666665 445444 5666666666655543321 1123455555
Q ss_pred EecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc-cCCC
Q 005747 613 IDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT-LNPA 675 (679)
Q Consensus 613 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~-~lp~ 675 (679)
++.|......+.....+++|+.|++++|. ....+|..+ ..+++|+.|++++|.++ .+|.
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~--~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNN--FTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCc--cCCcCChhH--hcCCCCCEEECcCCCCcCcCCh
Confidence 65554443334444456677777777766 222334334 56778888888888875 3443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=3.3e-21 Score=196.98 Aligned_cols=224 Identities=23% Similarity=0.270 Sum_probs=173.4
Q ss_pred CceEEEEeecccCC--CCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLL--SLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l 515 (679)
+.||.+++..|++. .+|+.+.++..|..|||++|+++. |..+..-+++-+|+||+|+|..+|..+ -+|+.|-+|||
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 67888888888886 588888888889999999988888 677888888888999999888888765 48888888899
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecC--CCCCCcc-cccccceeE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV--NTLPRGL-FLEKLERYK 592 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l--~~lp~~~-~l~~L~~L~ 592 (679)
|+|+ +..+|+. +..|.+|++|.|++|.+... -...+-.+++|+.|.+++.+- ..+|..+ .+.||..++
T Consensus 158 S~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hf-------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 158 SNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHF-------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred ccch-hhhcCHH-HHHHhhhhhhhcCCChhhHH-------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 8877 7888888 78888899999988877322 223445667788888887654 3788888 889999999
Q ss_pred EEEcCccccccc---cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 593 ILIGGVWGWEYA---DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 593 l~~~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
++.|++...+.. ..+++.|+|+.|.+....-+... ..+|++|+||.|+ +..+|..+ ..++.|+.|.+.+|+
T Consensus 229 lS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~-W~~lEtLNlSrNQ---Lt~LP~av--cKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 229 LSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGE-WENLETLNLSRNQ---LTVLPDAV--CKLTKLTKLYANNNK 302 (1255)
T ss_pred ccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHH-Hhhhhhhccccch---hccchHHH--hhhHHHHHHHhccCc
Confidence 998887776543 34677778877766655433332 4788999999886 66667766 778899999999998
Q ss_pred Cc--cCCCCCC
Q 005747 670 LT--LNPAESK 678 (679)
Q Consensus 670 l~--~lp~~~~ 678 (679)
|+ .+|++|.
T Consensus 303 L~FeGiPSGIG 313 (1255)
T KOG0444|consen 303 LTFEGIPSGIG 313 (1255)
T ss_pred ccccCCccchh
Confidence 75 4577663
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.9e-20 Score=182.38 Aligned_cols=226 Identities=19% Similarity=0.228 Sum_probs=164.7
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc-hh-hcCCCCCcEEEcccccccccchhhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI-TV-IRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~ 517 (679)
.+|..|++..|.+..+| .|.+|..|..|+++.|.+..+ .. ...+.+|.+|||+.|+++++|+.++.+.+|.+||+|+
T Consensus 206 ~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence 45666777777777777 677777777777777777663 33 4488999999999999999999999999999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhh---------------------------------------------
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEV--------------------------------------------- 552 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------------------------------------- 552 (679)
|. ++.+|.. ++++ .|+.|-+.+|.+..+..++
T Consensus 285 N~-is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 285 ND-ISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred Cc-cccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 87 7778888 7888 8999999888764320000
Q ss_pred --------------------------------------------------------------cccccccccccCCCcEEE
Q 005747 553 --------------------------------------------------------------EGVKNASLHELKHLISLE 570 (679)
Q Consensus 553 --------------------------------------------------------------~~~~~~~l~~l~~L~~L~ 570 (679)
.+-+|..++.+++|..|+
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 002234456667788888
Q ss_pred EEeecCCCCCCcc-cccccceeEEEEcCccccccccc---cccEEEEecCccccchHHHHHHhcccceeecccccccccc
Q 005747 571 LQIQDVNTLPRGL-FLEKLERYKILIGGVWGWEYADI---WCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVN 646 (679)
Q Consensus 571 l~~n~l~~lp~~~-~l~~L~~L~l~~~~~~~~~~~~~---~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~ 646 (679)
+++|.+..+|... .+..|+.|++++|.+...+...- .+..+..+.+..-..++.....+.+|..|+|.+|. +.
T Consensus 442 L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd---lq 518 (565)
T KOG0472|consen 442 LSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND---LQ 518 (565)
T ss_pred cccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc---hh
Confidence 8888888888777 77778888888876655543222 22222223233333444445568999999998875 78
Q ss_pred ccccccCcCCCCCccEEEEecCcCccCC
Q 005747 647 YFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 647 ~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
.+|+.+ +.+.+|++|+++||++...|
T Consensus 519 ~IPp~L--gnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 519 QIPPIL--GNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred hCChhh--ccccceeEEEecCCccCCCH
Confidence 889988 99999999999999998443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=9.8e-21 Score=184.44 Aligned_cols=222 Identities=23% Similarity=0.253 Sum_probs=156.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
..+.+|++++|.+.++|+.++.+..+..|+.++|++.. |+.++++.+|+.|+.++|.+.++|++++.+..|..|+..+|
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc
Confidence 46778888888888888888888888888888888777 67788888888888888888888888888888888888877
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEcC
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIGG 597 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~~ 597 (679)
+ +..+|++ +.++.+|..|++.+|.+... |...-+++.|++||...|-++.+|+.+ .+.+|..|++..|.
T Consensus 148 ~-i~slp~~-~~~~~~l~~l~~~~n~l~~l--------~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 148 Q-ISSLPED-MVNLSKLSKLDLEGNKLKAL--------PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred c-cccCchH-HHHHHHHHHhhccccchhhC--------CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence 6 6667777 67778888888888777332 223333677777777777777777777 67777777777776
Q ss_pred cccccccc--ccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCC
Q 005747 598 VWGWEYAD--IWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 598 ~~~~~~~~--~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~ 675 (679)
+..++... ..+..+.+..|.....+......+++|..|+|.+|+ ++++|.++ .-+.+|.+||+|+|.++.+|-
T Consensus 218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk---lke~Pde~--clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK---LKEVPDEI--CLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc---cccCchHH--HHhhhhhhhcccCCccccCCc
Confidence 66554221 234444555544444555555566777777777765 56666666 556677777777777777765
Q ss_pred C
Q 005747 676 E 676 (679)
Q Consensus 676 ~ 676 (679)
+
T Consensus 293 s 293 (565)
T KOG0472|consen 293 S 293 (565)
T ss_pred c
Confidence 4
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.3e-19 Score=156.69 Aligned_cols=166 Identities=27% Similarity=0.368 Sum_probs=119.4
Q ss_pred CCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCC
Q 005747 454 SLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKL 532 (679)
Q Consensus 454 ~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l 532 (679)
.+| .+..+.+++.|-|++|+++. ++.+..+.+|+.|++++|+|+++|.+++.+++|+.|+++-|+ +..+|.+ |+.+
T Consensus 25 ~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprg-fgs~ 101 (264)
T KOG0617|consen 25 ELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRG-FGSF 101 (264)
T ss_pred hcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccc-cCCC
Confidence 344 45567778888888888877 677888888888888888888888888888888888888876 6778887 7888
Q ss_pred cccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEcCccccccccccccEE
Q 005747 533 SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIGGVWGWEYADIWCREF 611 (679)
Q Consensus 533 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l 611 (679)
+.|+.|+++.|++. ...+|..|..++.|+.|.++.|.+..+|+.+ .+++|+-|.+..|++
T Consensus 102 p~levldltynnl~------e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl------------- 162 (264)
T KOG0617|consen 102 PALEVLDLTYNNLN------ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL------------- 162 (264)
T ss_pred chhhhhhccccccc------cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-------------
Confidence 88888888888774 3467778888888888888888888888776 666666555544332
Q ss_pred EEecCccccchHHHHHHhcccceeecccccccccccccccc
Q 005747 612 KIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNEL 652 (679)
Q Consensus 612 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l 652 (679)
+..|..+.. +..|++|.+.+|+ +.-+|+++
T Consensus 163 -------l~lpkeig~-lt~lrelhiqgnr---l~vlppel 192 (264)
T KOG0617|consen 163 -------LSLPKEIGD-LTRLRELHIQGNR---LTVLPPEL 192 (264)
T ss_pred -------hhCcHHHHH-HHHHHHHhcccce---eeecChhh
Confidence 222333332 4666677766654 44455544
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.5e-19 Score=151.92 Aligned_cols=156 Identities=26% Similarity=0.360 Sum_probs=142.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
++++.|.+|+|.++.+|+.+..+.+|++|++++|++++ |.+++++++|+.|+++-|++..+|.+++.++-|+.|||++|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 67899999999999999999999999999999999999 78899999999999999999999999999999999999998
Q ss_pred cCcc-ccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEc
Q 005747 519 RELE-IIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIG 596 (679)
Q Consensus 519 ~~~~-~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~ 596 (679)
++.+ .+|.+ |-.|+.|+.|++++|.+ ..+|..+++|++|+.|.+..|.+-++|..+ .+..|+.|.+.+|
T Consensus 113 nl~e~~lpgn-ff~m~tlralyl~dndf--------e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 113 NLNENSLPGN-FFYMTTLRALYLGDNDF--------EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ccccccCCcc-hhHHHHHHHHHhcCCCc--------ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 8654 56666 67899999999999988 467889999999999999999999999999 9999999999988
Q ss_pred Cccccccc
Q 005747 597 GVWGWEYA 604 (679)
Q Consensus 597 ~~~~~~~~ 604 (679)
.+.-++..
T Consensus 184 rl~vlppe 191 (264)
T KOG0617|consen 184 RLTVLPPE 191 (264)
T ss_pred eeeecChh
Confidence 87665543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=7.3e-17 Score=179.88 Aligned_cols=98 Identities=27% Similarity=0.347 Sum_probs=68.2
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCch-hhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDIT-VIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
++++.|++++|.++.+|..+. .+|++|++++|.++.++ .+ ..+|+.|+|++|+++.+|..+. .+|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 467788888888887776554 47888888888777643 23 2467788888888777776654 46778888777
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDK 547 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~ 547 (679)
+ +..+|.. + .++|+.|++++|.+..
T Consensus 273 ~-L~~LP~~-l--~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 273 K-ISCLPEN-L--PEELRYLSVYDNSIRT 297 (754)
T ss_pred c-cCccccc-c--CCCCcEEECCCCcccc
Confidence 6 4466765 2 2477778887777744
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=3.8e-16 Score=186.29 Aligned_cols=198 Identities=20% Similarity=0.202 Sum_probs=131.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCC-CCCchhhcCCCCCcEEEcccc-cccccchhhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCK-LLDITVIRDLKKLEVLCLRGS-DIKRLPVEVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~~L~l~~ 517 (679)
.+|+.|++++|.+..+|..+..+++|+.|+|++|. +..++.++.+++|++|+|++| .+..+|.+++++++|+.|++++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 46667777777777776667777777777777664 444666777777777777776 4557777777777777777777
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcC
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGG 597 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~ 597 (679)
|..++.+|.. + ++++|+.|++++|.. ....|. ..++|+.|++++|.+..+|..+.+++|..|.+..+.
T Consensus 691 c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~-------L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 691 CENLEILPTG-I-NLKSLYRLNLSGCSR-------LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred CCCcCccCCc-C-CCCCCCEEeCCCCCC-------cccccc---ccCCcCeeecCCCccccccccccccccccccccccc
Confidence 7777777765 2 677777777777654 222332 246788888998888888887777788877775532
Q ss_pred cccc-----------ccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccc
Q 005747 598 VWGW-----------EYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNE 651 (679)
Q Consensus 598 ~~~~-----------~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~ 651 (679)
.... ......++.|.++.+......+.....+++|+.|++++|. .+..+|..
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~--~L~~LP~~ 821 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--NLETLPTG 821 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--CcCeeCCC
Confidence 1111 0112356667776655444334444557788888888776 56555543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.6e-16 Score=175.45 Aligned_cols=206 Identities=16% Similarity=0.227 Sum_probs=148.0
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc-hhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI-TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
.+...|+++++.++.+|..+. ++|+.|+|++|.++.+ ..+. .+|++|++++|+++.+|..+. .+|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 467899999999999997664 6899999999999984 3343 589999999999999998664 47999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGV 598 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~ 598 (679)
. +..+|.. + ..+|+.|++++|.+.. +|..+. ++|+.|++++|+++.+|..+ .++|+.|++++|.+
T Consensus 252 ~-L~~LP~~-l--~s~L~~L~Ls~N~L~~--------LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-p~sL~~L~Ls~N~L 316 (754)
T PRK15370 252 R-ITELPER-L--PSALQSLDLFHNKISC--------LPENLP--EELRYLSVYDNSIRTLPAHL-PSGITHLNVQSNSL 316 (754)
T ss_pred c-cCcCChh-H--hCCCCEEECcCCccCc--------cccccC--CCCcEEECCCCccccCcccc-hhhHHHHHhcCCcc
Confidence 8 5688887 3 3589999999999843 344332 47999999999998888653 24677777777776
Q ss_pred ccccc-ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCCC
Q 005747 599 WGWEY-ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPAE 676 (679)
Q Consensus 599 ~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~ 676 (679)
..++. ....++.|.++.|.....+..+ .++|+.|++++|+ +..+|..+ .++|++|+|++|+|+.+|..
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~---L~~LP~~l----p~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQ---ITVLPETL----PPTITTLDVSRNALTNLPEN 385 (754)
T ss_pred ccCCccccccceeccccCCccccCChhh---cCcccEEECCCCC---CCcCChhh----cCCcCEEECCCCcCCCCCHh
Confidence 65543 2335666666665544444322 3567777777765 33344333 35667777777766666643
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=2e-16 Score=175.21 Aligned_cols=200 Identities=19% Similarity=0.171 Sum_probs=100.7
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|+++.+|.. .++|+.|++++|.++.++. .+.+|+.|++++|+++.+|.. +++|+.|++++|.
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~ 313 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ 313 (788)
T ss_pred CCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc
Confidence 4556666666666655532 2455566666665554332 124556666666666666542 3566667776665
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc----------------
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL---------------- 583 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~---------------- 583 (679)
+..+|.. ..+|+.|++++|.+.. +|. ...+|+.|+|++|+++.+|...
T Consensus 314 -L~~Lp~l----p~~L~~L~Ls~N~L~~--------LP~---lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 314 -LASLPAL----PSELCKLWAYNNQLTS--------LPT---LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL 377 (788)
T ss_pred -cccCCCC----cccccccccccCcccc--------ccc---cccccceEecCCCccCCCCCCCcccceehhhccccccC
Confidence 3334431 1223334444443321 111 0124555555555555555321
Q ss_pred --cccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCcc
Q 005747 584 --FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLK 661 (679)
Q Consensus 584 --~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~ 661 (679)
...+|+.|++++|.+..++.....++.|+++.|.....|. .+.+|+.|++++|+ +..+|..+ ..+++|+
T Consensus 378 P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~Nq---Lt~LP~sl--~~L~~L~ 448 (788)
T PRK15387 378 PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQ---LTRLPESL--IHLSSET 448 (788)
T ss_pred cccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCc----chhhhhhhhhccCc---ccccChHH--hhccCCC
Confidence 1234455555555544444433445555555544433322 12345566666654 33455554 5667777
Q ss_pred EEEEecCcCcc
Q 005747 662 HLYIRGSHLTL 672 (679)
Q Consensus 662 ~L~l~~n~l~~ 672 (679)
.|+|++|+|+.
T Consensus 449 ~LdLs~N~Ls~ 459 (788)
T PRK15387 449 TVNLEGNPLSE 459 (788)
T ss_pred eEECCCCCCCc
Confidence 88888887763
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=9.3e-16 Score=169.97 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=36.2
Q ss_pred CCcEEEEEeecCCCCCCcccccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 565 HLISLELQIQDVNTLPRGLFLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 565 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
+|+.|++++|.++.+|.. .++|+.|++++|.+..++.....+..|.++.|.....|..+ ..+++|+.|+|++|+
T Consensus 383 ~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESL-IHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHH-hhccCCCeEECCCCC
Confidence 455555555555555542 24455555555555544443334444445444444433332 234555555555555
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=2.1e-17 Score=177.41 Aligned_cols=223 Identities=22% Similarity=0.268 Sum_probs=169.7
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
.+++.+++++|.++.+|++++.+.+|+.|+..+|.++. +..+....+|++|++.+|.++.+|+....+++|++|+|..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 68999999999999999999999999999999999977 56788889999999999999999988888999999999998
Q ss_pred cCccccChhhhcCCcc-cceeecCCCCCCcchh-----------------hhcccccccccccCCCcEEEEEeecCCCCC
Q 005747 519 RELEIIPPNVLSKLSH-LEELYMGPRSFDKWEV-----------------EVEGVKNASLHELKHLISLELQIQDVNTLP 580 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~-L~~L~l~~n~~~~~~~-----------------~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp 580 (679)
+ +..+|+..+..+.. |+.|+.+.|.+...+. .+.+..-..+.+..+|+.|+|++|++..+|
T Consensus 321 ~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 N-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred c-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 7 78888765443332 4444444443322210 002233346778899999999999999999
Q ss_pred Ccc--cccccceeEEEEcCccccccccc---cccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcC
Q 005747 581 RGL--FLEKLERYKILIGGVWGWEYADI---WCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKV 655 (679)
Q Consensus 581 ~~~--~l~~L~~L~l~~~~~~~~~~~~~---~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~ 655 (679)
... .++.|+.|++++|.+..++.... .+..|....|.....| -...++.|+.+|++.|++..+. ++.. .
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~-l~~~---~ 473 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVT-LPEA---L 473 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhh-hhhh---C
Confidence 887 89999999999999988875443 4555555656666656 3445799999999998843322 1211 2
Q ss_pred CCCCccEEEEecCc
Q 005747 656 GPSQLKHLYIRGSH 669 (679)
Q Consensus 656 ~~~~L~~L~l~~n~ 669 (679)
.-|+|++||++||.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 23899999999998
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=3.5e-15 Score=145.94 Aligned_cols=128 Identities=22% Similarity=0.295 Sum_probs=88.7
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccc-ccccccch-hhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRG-SDIKRLPV-EVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~-n~i~~lp~-~i~~l~~L~~L~ 514 (679)
.....++|..|+|+.+|+ .|+.+++||.|||++|.|+. +..|.++++|..|-+.+ |+|+.+|. .+++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 455677777777777766 47777778888887777776 46677777776665555 77777776 456777777777
Q ss_pred ccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeec
Q 005747 515 LRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD 575 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 575 (679)
+.-|. +.-++.++|..|++|..|.+.+|.+.. .-...|..+..++++.+..|.
T Consensus 147 lNan~-i~Cir~~al~dL~~l~lLslyDn~~q~-------i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANH-INCIRQDALRDLPSLSLLSLYDNKIQS-------ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhh-hcchhHHHHHHhhhcchhcccchhhhh-------hccccccchhccchHhhhcCc
Confidence 77766 555666667777777777777776622 222366677777777776665
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=5.2e-15 Score=159.21 Aligned_cols=224 Identities=19% Similarity=0.207 Sum_probs=150.1
Q ss_pred ceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 441 QVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
+|++|++++|.+..+|..+..+.+|+.|+++.|.+.. +.+..++.+|++|+|.+|.+..+|.++..+++|++|+++.|.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 5999999999999999999999999999999999988 677889999999999999999999999999999999999987
Q ss_pred CccccChhhhcCCcccceeecCCCCC-Ccch-----------hhhcccccccccccCCCcEEEEEeecCCCCCCcccccc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSF-DKWE-----------VEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEK 587 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~-~~~~-----------~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~ 587 (679)
.+.+|.- +..++.+..+..++|.. .... ..+.+.++..+..+++ .|+|.+|.+. .-....+.+
T Consensus 126 -f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~ 200 (1081)
T KOG0618|consen 126 -FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLAN 200 (1081)
T ss_pred -cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccc
Confidence 6777875 66777777777777711 1100 0112344445555555 5888888877 222225556
Q ss_pred cceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEec
Q 005747 588 LERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRG 667 (679)
Q Consensus 588 L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~ 667 (679)
|+.+....|.+..+.....+++.+..+.|......... ...+|+.+++++|+ +..+|..+ ..+++|+.|++.+
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~---l~~lp~wi--~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNN---LSNLPEWI--GACANLEALNANH 273 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeecccc--ccccceeeecchhh---hhcchHHH--HhcccceEecccc
Confidence 66666655555555555555555555544443221111 12355566665554 33334333 4455566666666
Q ss_pred CcCccCCCC
Q 005747 668 SHLTLNPAE 676 (679)
Q Consensus 668 n~l~~lp~~ 676 (679)
|+|+.+|..
T Consensus 274 N~l~~lp~r 282 (1081)
T KOG0618|consen 274 NRLVALPLR 282 (1081)
T ss_pred hhHHhhHHH
Confidence 655555543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=6.6e-15 Score=144.02 Aligned_cols=110 Identities=20% Similarity=0.295 Sum_probs=50.2
Q ss_pred CCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecC
Q 005747 465 LQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMG 541 (679)
Q Consensus 465 L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~ 541 (679)
-..++|..|.|+.+ ..|+.+++||.|||++|+|+.| |..+..+.+|..|-+.+|+.++.+|.++|++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 33444444444441 3344445555555555544444 33444444444444444333444444444445555444444
Q ss_pred CCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC
Q 005747 542 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR 581 (679)
Q Consensus 542 ~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~ 581 (679)
-|++ .......|..|++|..|.+..|.+..++.
T Consensus 149 an~i-------~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 149 ANHI-------NCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred hhhh-------cchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 4444 22233344444444444444444444443
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.8e-14 Score=138.91 Aligned_cols=209 Identities=22% Similarity=0.212 Sum_probs=157.9
Q ss_pred CceEEEEeecccCCCCCc--cccCCCCCCEEEcCCCCCCCc----hhhcCCCCCcEEEcccccccccchh--hhcCcCCC
Q 005747 440 EQVRVINVSYMNLLSLPS--SLGLLSNLQTLSLYNCKLLDI----TVIRDLKKLEVLCLRGSDIKRLPVE--VGELTLLR 511 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~L~~n~i~~lp~~--i~~l~~L~ 511 (679)
++|+.+.|.++.+...+. ....|++++.|||+.|-+... .....|++|+.|+|+.|.+.....+ -..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 678899999988876663 567899999999999999883 4567899999999999988743322 24788999
Q ss_pred EEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc---ccccc
Q 005747 512 LLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL---FLEKL 588 (679)
Q Consensus 512 ~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~---~l~~L 588 (679)
.|.|+.|.+...--......+|+|+.|+|..|.. ..........+..|++|||++|++-.++... .++.|
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-------~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-------ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-------cceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 9999999976544344466789999999999953 1223344566788999999999998777433 88999
Q ss_pred ceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecC
Q 005747 589 ERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGS 668 (679)
Q Consensus 589 ~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n 668 (679)
+.|+++.+++..+...+. ...+....+++|+.|+++.|++..+.++ ..+ ..+++|+.|.+..|
T Consensus 274 ~~Lnls~tgi~si~~~d~--------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~l--~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDV--------------ESLDKTHTFPKLEYLNISENNIRDWRSL-NHL--RTLENLKHLRITLN 336 (505)
T ss_pred hhhhccccCcchhcCCCc--------------cchhhhcccccceeeecccCcccccccc-chh--hccchhhhhhcccc
Confidence 999998887665432221 0011234579999999999996666655 444 56799999999999
Q ss_pred cCcc
Q 005747 669 HLTL 672 (679)
Q Consensus 669 ~l~~ 672 (679)
+|+.
T Consensus 337 ~ln~ 340 (505)
T KOG3207|consen 337 YLNK 340 (505)
T ss_pred cccc
Confidence 9865
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=1.6e-13 Score=142.08 Aligned_cols=226 Identities=18% Similarity=0.110 Sum_probs=98.3
Q ss_pred eEEEEeecccCC-----CCCccccCCCCCCEEEcCCCCCCC--------chhhcCCCCCcEEEccccccc-ccchhhhcC
Q 005747 442 VRVINVSYMNLL-----SLPSSLGLLSNLQTLSLYNCKLLD--------ITVIRDLKKLEVLCLRGSDIK-RLPVEVGEL 507 (679)
Q Consensus 442 L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~L~~n~l~~--------~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l 507 (679)
|+.|+++++.++ .++..+...++|+.|+++++.+.. +..+..+++|++|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 455555555542 233334444555555555554441 123344555555555555544 233333333
Q ss_pred cC---CCEEeccCCcCcc----ccChhhhcCC-cccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC-
Q 005747 508 TL---LRLLDLRDCRELE----IIPPNVLSKL-SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT- 578 (679)
Q Consensus 508 ~~---L~~L~l~~n~~~~----~lp~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~- 578 (679)
.+ |++|++++|.... .+... +..+ ++|+.|++++|.+.... ...++..+..+++|++|++++|.++.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 33 5555555554321 11111 2333 45555555555542110 01122334444455555555555441
Q ss_pred ----CCCcc-cccccceeEEEEcCcccc--------ccccccccEEEEecCcccc-chHHHHHH----hcccceeecccc
Q 005747 579 ----LPRGL-FLEKLERYKILIGGVWGW--------EYADIWCREFKIDLDSKIR-LKDGLILK----LQGIEDLWLSDL 640 (679)
Q Consensus 579 ----lp~~~-~l~~L~~L~l~~~~~~~~--------~~~~~~l~~l~l~~~~~~~-~~~~~~~~----l~~L~~L~L~~~ 640 (679)
++..+ .+++|+.|++++|.+... ......++.|.++.+.... ....+... .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 11111 223555555554443211 1112234455554433221 11112222 257777777777
Q ss_pred ccc--cccccccccCcCCCCCccEEEEecCcCccC
Q 005747 641 EER--DVNYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 641 ~~~--~l~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
.+. ....+...+ ..+++|++|++++|.++..
T Consensus 261 ~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 261 DITDDGAKDLAEVL--AEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCcHHHHHHHHHH--hcCCCccEEECCCCCCcHH
Confidence 633 122222222 3446777777777777643
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=7.9e-15 Score=149.79 Aligned_cols=174 Identities=21% Similarity=0.297 Sum_probs=116.8
Q ss_pred EEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCcc
Q 005747 444 VINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELE 522 (679)
Q Consensus 444 ~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~ 522 (679)
..|++.|++..+|..++.+..|..|.|..|.+.. +..++++..|.+|||+.|+++.+|..++.|+ |+.|-+++|+ ++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~ 156 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LT 156 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cc
Confidence 4567777777777777777777777777777666 5667777777777777777777777776665 6777777765 66
Q ss_pred ccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCccccc
Q 005747 523 IIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVWGWE 602 (679)
Q Consensus 523 ~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~ 602 (679)
.+|.+ ++.+..|.+|+.+.|.+. .+|..++++.+|+.|++..|++..+|..+..-
T Consensus 157 ~lp~~-ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~l~vrRn~l~~lp~El~~L---------------- 211 (722)
T KOG0532|consen 157 SLPEE-IGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL---------------- 211 (722)
T ss_pred cCCcc-cccchhHHHhhhhhhhhh--------hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC----------------
Confidence 67776 566677777777777662 34566677777777777777777666653111
Q ss_pred cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCCCC
Q 005747 603 YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 603 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
.|..||+++|+ +..+|-++ ..+..|++|-|.+|+|+.-|++|
T Consensus 212 ----------------------------pLi~lDfScNk---is~iPv~f--r~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 212 ----------------------------PLIRLDFSCNK---ISYLPVDF--RKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ----------------------------ceeeeecccCc---eeecchhh--hhhhhheeeeeccCCCCCChHHH
Confidence 35566666665 44455554 66677777777777777666543
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=7.3e-11 Score=140.04 Aligned_cols=280 Identities=15% Similarity=0.148 Sum_probs=172.9
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHHH
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIAD 204 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~ 204 (679)
|.....++-|....+.+-+ ....+++.|.|++|.||||++.++... ++.++|+++.. ..+...+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3445567788876665543 345789999999999999999998853 22689999964 4466667677776
Q ss_pred HhCCCCCc--------------cchhHHHHHHHHHHHc-CCceEEEEecCCCcc--chh-hcCCCCCCCCCCcEEEEeec
Q 005747 205 KLGLKFDE--------------ESESGRARRLHDRLKK-EKRILVILDNIWGNL--DLK-AAGIPHGDDHRGCKVLLTAR 266 (679)
Q Consensus 205 ~l~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~-~l~~~~~~~~~gs~iivTtR 266 (679)
.++..... .+.......+...+.. +.+++||+||+...+ ... .+...+....++.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 66421111 0111223344444443 678999999996542 112 22212222235668889999
Q ss_pred Ccchhc--ccCCCcceEEec----CCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChh
Q 005747 267 SLDTLS--TKMDSQKNFSVS----FLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLF 340 (679)
Q Consensus 267 ~~~v~~--~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~ 340 (679)
...... .........++. +|+.+|+.++|....+.... .+...+|.+.|+|+|+++..++..+......
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 743221 000122345565 99999999999877654322 3557789999999999999998877652211
Q ss_pred HHHHHHHHhcCCCCCCcCCchhhHHHHHH-hhhcCCChhHHHHHHHHhcccccCChh------------HHHHhhhcccc
Q 005747 341 DWKDALEQLRRPSSTNLMNVQPTAYKAIK-LSYDKLAGEELKNIFLLIGYTAIASID------------DLLMYGMGMGY 407 (679)
Q Consensus 341 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~lk~cfl~~s~fp~~~~~------------~li~~w~~~g~ 407 (679)
.......+.... ...+...+. -.+..||++ .+..+...|+++.++.+ .++......|+
T Consensus 236 -~~~~~~~~~~~~-------~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l 306 (903)
T PRK04841 236 -LHDSARRLAGIN-------ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGL 306 (903)
T ss_pred -hhhhhHhhcCCC-------chhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCC
Confidence 011111111100 122344333 247799998 89999999999865533 23333344455
Q ss_pred cc-c----CCcEEeehhHHHHHHHHh
Q 005747 408 FK-K----KGLFSMHDVVRDVAISIA 428 (679)
Q Consensus 408 ~~-~----~~~~~mHdlv~~~~~~~~ 428 (679)
+- . ...|+.|++++++.+...
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHH
Confidence 32 1 237899999999998765
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=7.2e-13 Score=120.84 Aligned_cols=124 Identities=27% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCCCCEEEcCCCCCCCchhhc-CCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceee
Q 005747 461 LLSNLQTLSLYNCKLLDITVIR-DLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELY 539 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~ 539 (679)
++..++.|+|++|.|+.++.++ .+.+|+.|+|++|.|+.++ ++..+++|++|++++|. ++.++..+...+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 4445566666666666555555 3556666666666666554 35556666666666655 4444433223456666666
Q ss_pred cCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-----cccccceeE
Q 005747 540 MGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-----FLEKLERYK 592 (679)
Q Consensus 540 l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-----~l~~L~~L~ 592 (679)
+++|.+..+. .-..++.+++|+.|++.+|+++..+..- .+|+|+.|+
T Consensus 95 L~~N~I~~l~------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLN------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCC------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChH------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666654331 1234455666666666666665443211 455555554
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=9.7e-13 Score=136.19 Aligned_cols=224 Identities=17% Similarity=0.148 Sum_probs=111.5
Q ss_pred ceEEEEeecccCCC-------CCccccCCCCCCEEEcCCCCCCC--chhhcCCCC---CcEEEccccccc-----ccchh
Q 005747 441 QVRVINVSYMNLLS-------LPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKK---LEVLCLRGSDIK-----RLPVE 503 (679)
Q Consensus 441 ~L~~L~l~~n~l~~-------lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~---L~~L~L~~n~i~-----~lp~~ 503 (679)
+++.|+++++.+.. ++..+..+++|+.|++++|.+.. +..+..+.+ |++|++++|.++ .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 45556665555442 12234455566666666666543 223333333 666666666554 12233
Q ss_pred hhcC-cCCCEEeccCCcCccc----cChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 504 VGEL-TLLRLLDLRDCRELEI----IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 504 i~~l-~~L~~L~l~~n~~~~~----lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
+..+ ++|+.|++++|.+.+. ++.. +..+++|++|++++|.+.... ...++..+..+++|+.|++++|.++.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDAG---IRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchHH---HHHHHHHHHhCCCCCEEeccCCccCh
Confidence 4444 5666666666654321 1212 344555666666666553210 01122333444566666666665542
Q ss_pred C-----CCcc-cccccceeEEEEcCcccc---------ccccccccEEEEecCcccc----chHHHHHHhcccceeeccc
Q 005747 579 L-----PRGL-FLEKLERYKILIGGVWGW---------EYADIWCREFKIDLDSKIR----LKDGLILKLQGIEDLWLSD 639 (679)
Q Consensus 579 l-----p~~~-~l~~L~~L~l~~~~~~~~---------~~~~~~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~L~~ 639 (679)
. +..+ .+++|+.|++++|.+.+. ......++.+.++.+.... ........+++|+.|++++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 1 1112 345566666665554321 0011345555555543321 1112223347899999999
Q ss_pred cccccc--cccccccCcCCC-CCccEEEEecCcC
Q 005747 640 LEERDV--NYFVNELDKVGP-SQLKHLYIRGSHL 670 (679)
Q Consensus 640 ~~~~~l--~~i~~~l~~~~~-~~L~~L~l~~n~l 670 (679)
|.+..- ..+...+ ..+ +.|+.|++.+|++
T Consensus 288 N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 288 NKFGEEGAQLLAESL--LEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHH--hhcCCchhhcccCCCCC
Confidence 884322 2222222 445 7899999999875
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=2.4e-12 Score=117.40 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=55.6
Q ss_pred CceEEEEeecccCCCCCcccc-CCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLG-LLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l~~ 517 (679)
..++.|+|++|.|+.+. .++ .+.+|+.|+|++|.++.++.+..+++|++|++++|.|+.+++.+ ..+++|+.|++++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 46899999999999875 465 68899999999999999999999999999999999999997766 4799999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL 571 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (679)
|++...-.-..++.+++|+.|++.+|.+...+. --...+..+++|+.||-
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~----YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN----YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGGSTT----HHHHHHHH-TT-SEETT
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccchhh----HHHHHHHHcChhheeCC
Confidence 985332222337789999999999999854321 12234677899999874
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.27 E-value=7.7e-10 Score=111.35 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=117.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHH---
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHD--- 224 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~--- 224 (679)
..+.+++.|+|++|+||||+++.+++...... + ..+|+ +....+..+++..|+..++.+....+.......+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998865321 1 22333 333457788999999999876544333333333333
Q ss_pred -HHHcCCceEEEEecCCCcc--chhhcCC--CC-CCCCCCcEEEEeecCcch--hc------ccCCCcceEEecCCChHH
Q 005747 225 -RLKKEKRILVILDNIWGNL--DLKAAGI--PH-GDDHRGCKVLLTARSLDT--LS------TKMDSQKNFSVSFLKEEE 290 (679)
Q Consensus 225 -~l~~~k~~LlVlDdv~~~~--~~~~l~~--~~-~~~~~gs~iivTtR~~~v--~~------~~~~~~~~~~l~~L~~~e 290 (679)
....+++.+||+||++... .++.+.. .+ ........|++|....-. +. ........+.+.+++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2335788999999998763 3443321 11 112223345566543211 00 001113467899999999
Q ss_pred HHHHHHHHhCCCC---CCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 005747 291 AWSLFKKMAGDYV---EGNELKEVARDVAKECAGLPVAIVTVATAL 333 (679)
Q Consensus 291 ~~~Lf~~~~~~~~---~~~~~~~~~~~I~~~~~glPlai~~~~~~L 333 (679)
..+++...+.... ...-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764221 112235788999999999999999988876
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=2.8e-09 Score=113.54 Aligned_cols=236 Identities=21% Similarity=0.152 Sum_probs=143.8
Q ss_pred CcccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.+..++||++++++|...+. ......+.|+|++|+|||++++.++++.......-.++|+++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 34678899999999998874 33456788999999999999999999876543234577888887778889999999
Q ss_pred HHhCCC-CC--ccchhHHHHHHHHHHHc-CCceEEEEecCCCcc------chhhcCCCCCCCCCCc--EEEEeecCcchh
Q 005747 204 DKLGLK-FD--EESESGRARRLHDRLKK-EKRILVILDNIWGNL------DLKAAGIPHGDDHRGC--KVLLTARSLDTL 271 (679)
Q Consensus 204 ~~l~~~-~~--~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs--~iivTtR~~~v~ 271 (679)
++++.. .. ..+..+....+.+.+.. +++.+||+|+++... .+..+.... ....++ .+|.++......
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchh
Confidence 998652 11 11233445556666653 456899999997642 122222111 111233 366666654332
Q ss_pred cc------cCCCcceEEecCCChHHHHHHHHHHhCCC-----CCCccHHHHHHHHHHHcCCChHHHHHHHHHhh----cC
Q 005747 272 ST------KMDSQKNFSVSFLKEEEAWSLFKKMAGDY-----VEGNELKEVARDVAKECAGLPVAIVTVATALR----DN 336 (679)
Q Consensus 272 ~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-----~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~----~~ 336 (679)
.. .......+.+.+++.++..+++..++... ..+..++.+++......|..+.|+.++-.+.. ..
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 11 01123478999999999999998876321 11222233333333334557777776654321 11
Q ss_pred ---CChhHHHHHHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChh
Q 005747 337 ---NSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGE 378 (679)
Q Consensus 337 ---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 378 (679)
-+.+....+.+... .....-.+..||.+
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~ 297 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH 297 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH
Confidence 13555555555431 12234457788876
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=1.8e-12 Score=122.52 Aligned_cols=133 Identities=19% Similarity=0.142 Sum_probs=90.5
Q ss_pred CcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cc
Q 005747 507 LTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FL 585 (679)
Q Consensus 507 l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l 585 (679)
.+.|+.||||+|. +..+..+ ..-+|.++.|++++|.+... ..+..|.+|+.||||+|.++.+..+- .+
T Consensus 283 Wq~LtelDLS~N~-I~~iDES-vKL~Pkir~L~lS~N~i~~v---------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDES-VKLAPKLRRLILSQNRIRTV---------QNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred Hhhhhhccccccc-hhhhhhh-hhhccceeEEeccccceeee---------hhhhhcccceEeecccchhHhhhhhHhhh
Confidence 4566777777765 5555555 45567777777777766321 23566677777777777776655544 66
Q ss_pred cccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEE
Q 005747 586 EKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYI 665 (679)
Q Consensus 586 ~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l 665 (679)
.|+++|.+..|.+..+. ....+-+|..|++++|+|..++++ ..+ +.+|.|++|.|
T Consensus 352 GNIKtL~La~N~iE~LS----------------------GL~KLYSLvnLDl~~N~Ie~ldeV-~~I--G~LPCLE~l~L 406 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLS----------------------GLRKLYSLVNLDLSSNQIEELDEV-NHI--GNLPCLETLRL 406 (490)
T ss_pred cCEeeeehhhhhHhhhh----------------------hhHhhhhheeccccccchhhHHHh-ccc--ccccHHHHHhh
Confidence 66666666555433221 122357899999999998888776 566 88999999999
Q ss_pred ecCcCccCCC
Q 005747 666 RGSHLTLNPA 675 (679)
Q Consensus 666 ~~n~l~~lp~ 675 (679)
.+||+..+|+
T Consensus 407 ~~NPl~~~vd 416 (490)
T KOG1259|consen 407 TGNPLAGSVD 416 (490)
T ss_pred cCCCccccch
Confidence 9999988775
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.22 E-value=8.9e-11 Score=115.52 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=105.2
Q ss_pred ccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH---------H
Q 005747 132 FESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE---------I 202 (679)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~---------i 202 (679)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.....+ + .++|+..........+... +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 689999999999999877788999999999999999999999874431 1 3445544444332221111 1
Q ss_pred HHHhCCCC-----------CccchhHHHHHHHHHHH-cCCceEEEEecCCCcc-chh-------hc---CCCCCCCCCCc
Q 005747 203 ADKLGLKF-----------DEESESGRARRLHDRLK-KEKRILVILDNIWGNL-DLK-------AA---GIPHGDDHRGC 259 (679)
Q Consensus 203 ~~~l~~~~-----------~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~~~-------~l---~~~~~~~~~gs 259 (679)
.+.++... ...........+.+.+. .+++++||+||+.... ... .+ ...... ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 11121100 01122334555666654 3456999999986655 111 11 111111 2333
Q ss_pred EEEEeecCcchhcc-------cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 260 KVLLTARSLDTLST-------KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 260 ~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
.+|+++.+...... ..+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..+..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44555544333211 2233446999999999999999997654311112245669999999999988764
No 34
>PF05729 NACHT: NACHT domain
Probab=99.21 E-value=1.1e-10 Score=108.07 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCC----CCeEEEEEcCCCcCHH---HHHHHHHHHhCCCCCccchhHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKL----FDQVVFSEVSESQDIR---KIQREIADKLGLKFDEESESGRARRLHD 224 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~l~~ 224 (679)
|++.|+|.+|+||||+++.++........ +...+|+..+...... .+...|..+......... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-----ELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-----HHHHH
Confidence 58999999999999999999998776543 3456777766544332 444444444432211111 12233
Q ss_pred HHHcCCceEEEEecCCCccc---------hhhcCCCCCC--CCCCcEEEEeecCcch--hcccCCCcceEEecCCChHHH
Q 005747 225 RLKKEKRILVILDNIWGNLD---------LKAAGIPHGD--DHRGCKVLLTARSLDT--LSTKMDSQKNFSVSFLKEEEA 291 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~iivTtR~~~v--~~~~~~~~~~~~l~~L~~~e~ 291 (679)
.+...++++||+|++++... +..+...+.. ..++++++||+|.... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33457899999999876532 1111111111 2468999999998666 333344456899999999999
Q ss_pred HHHHHHHh
Q 005747 292 WSLFKKMA 299 (679)
Q Consensus 292 ~~Lf~~~~ 299 (679)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.20 E-value=1.2e-09 Score=118.36 Aligned_cols=282 Identities=17% Similarity=0.158 Sum_probs=177.4
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~ 205 (679)
......+-|...++.+.. ..+.|++.|..++|.||||++.++...... -..+.|.+++.. .++..+...++..
T Consensus 16 ~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHH
Confidence 335556677755554443 347899999999999999999999884332 356999998765 4788888888877
Q ss_pred hCCCCCcc--------------chhHHHHHHHHHHH-cCCceEEEEecCC---CccchhhcCCCCCCCCCCcEEEEeecC
Q 005747 206 LGLKFDEE--------------SESGRARRLHDRLK-KEKRILVILDNIW---GNLDLKAAGIPHGDDHRGCKVLLTARS 267 (679)
Q Consensus 206 l~~~~~~~--------------~~~~~~~~l~~~l~-~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iivTtR~ 267 (679)
++.-.... +-......+...+. ..++..+||||.- +..--..+...+....++-..|||||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 76322211 11122344444443 2568999999953 222222222222334467889999998
Q ss_pred cchhc--ccCCCcceEEec----CCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhH
Q 005747 268 LDTLS--TKMDSQKNFSVS----FLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFD 341 (679)
Q Consensus 268 ~~v~~--~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~ 341 (679)
..-.. ...-.+..++++ .|+.+|+.++|....+..-+ +.-.+.+.+..+|.+-|+..++=.++++.+.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 54331 111122344444 48999999999887643333 345788999999999999999988884334333
Q ss_pred HHHHHHHhcCCCCCCcCCchhhHHHH-HHhhhcCCChhHHHHHHHHhcccccCChh------------HHHHhhhccccc
Q 005747 342 WKDALEQLRRPSSTNLMNVQPTAYKA-IKLSYDKLAGEELKNIFLLIGYTAIASID------------DLLMYGMGMGYF 408 (679)
Q Consensus 342 w~~~l~~l~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~lk~cfl~~s~fp~~~~~------------~li~~w~~~g~~ 408 (679)
-...+.- ..+-+..- ..=-++.||++ ++..++.||+++.|..+ .++...-..|++
T Consensus 246 ~~~~LsG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLF 313 (894)
T COG2909 246 SLRGLSG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLF 313 (894)
T ss_pred Hhhhccc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCc
Confidence 2222110 01111111 12246789998 99999999999864322 334444455554
Q ss_pred c-----cCCcEEeehhHHHHHHHHhhc
Q 005747 409 K-----KKGLFSMHDVVRDVAISIAST 430 (679)
Q Consensus 409 ~-----~~~~~~mHdlv~~~~~~~~~~ 430 (679)
- +...|+.|.++.+|.+.....
T Consensus 314 l~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 314 LQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eeeecCCCceeehhHHHHHHHHhhhcc
Confidence 3 277899999999998876554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=1.7e-12 Score=122.63 Aligned_cols=134 Identities=18% Similarity=0.207 Sum_probs=118.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
+.|+.||||+|.|+.+..++.-++.+++|++++|.+..+.++..|++|+.||||+|.++.+...-.+|-|.++|.|+.|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 56889999999999998888889999999999999999988999999999999999999887666789999999999986
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG 582 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~ 582 (679)
+..+.. +.+|.+|..|++++|++..++. -..+++|+.|++|.|.+|.+..+|..
T Consensus 364 -iE~LSG--L~KLYSLvnLDl~~N~Ie~lde------V~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 364 -IETLSG--LRKLYSLVNLDLSSNQIEELDE------VNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred -Hhhhhh--hHhhhhheeccccccchhhHHH------hcccccccHHHHHhhcCCCccccchH
Confidence 666654 7889999999999999965533 46789999999999999999887764
No 37
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=1.7e-08 Score=106.35 Aligned_cols=198 Identities=20% Similarity=0.211 Sum_probs=124.9
Q ss_pred cccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCC-CC---CeEEEEEcCCCcCHHHHHH
Q 005747 129 YEAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDK-LF---DQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~v~~~~~~~~l~~ 200 (679)
+..++||++++++|..++. ....+.+.|+|++|+|||++++.+++...... .. -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3478899999999999886 34456899999999999999999998754211 11 2467888887778889999
Q ss_pred HHHHHh---CCCCC--ccchhHHHHHHHHHHH-cCCceEEEEecCCCcc-c----hhhcCCCC-CCCC--CCcEEEEeec
Q 005747 201 EIADKL---GLKFD--EESESGRARRLHDRLK-KEKRILVILDNIWGNL-D----LKAAGIPH-GDDH--RGCKVLLTAR 266 (679)
Q Consensus 201 ~i~~~l---~~~~~--~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~----~~~l~~~~-~~~~--~gs~iivTtR 266 (679)
.|++++ +.... ..+..+....+.+.+. .+++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999998 33221 1122334455556554 3567899999997652 1 11221110 1111 2334555555
Q ss_pred Ccchh---ccc---CCCcceEEecCCChHHHHHHHHHHhCC----CCCCccHHHHHHHHHHHcCCChHHH
Q 005747 267 SLDTL---STK---MDSQKNFSVSFLKEEEAWSLFKKMAGD----YVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 267 ~~~v~---~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
..... ... ......+.+.+++.+|..+++..++.. ....++..+...+++..+.|.|-.+
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 43221 100 111356899999999999999988641 1122333345556777777887443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=6.3e-11 Score=126.34 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=25.9
Q ss_pred HhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccC
Q 005747 628 KLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 628 ~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
.+++++.|++++|.+..+ +. + ..+.+|+.|++++|.++..
T Consensus 253 ~l~~l~~L~~s~n~i~~i---~~-~--~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 253 NLSNLETLDLSNNQISSI---SS-L--GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccceecccccccccc---cc-c--cccCccCEEeccCcccccc
Confidence 346678888887763333 22 3 5667788888888776544
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=5.7e-12 Score=129.23 Aligned_cols=132 Identities=28% Similarity=0.362 Sum_probs=90.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
..|+.|+|+.|+++.+|..++.|+ |++|-+++|+++. |+.++.+.+|..||.+.|++..+|..++.+.+|+.|+++.|
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 456667777777777776665543 6777777777766 56666677777777777777777777777777777777776
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL 583 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~ 583 (679)
+ +..+|++ ++. -.|..||+++|++. .+|..|.+|++|++|-|.+|.+.+-|..+
T Consensus 200 ~-l~~lp~E-l~~-LpLi~lDfScNkis--------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 200 H-LEDLPEE-LCS-LPLIRLDFSCNKIS--------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred h-hhhCCHH-HhC-CceeeeecccCcee--------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 6 5566666 443 34677777777763 35666777777777777777777666655
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.1e-11 Score=120.30 Aligned_cols=192 Identities=19% Similarity=0.175 Sum_probs=134.2
Q ss_pred ccCCCCCCEEEcCCCCCCCch---hhcCCCCCcEEEcccccccc---cchhhhcCcCCCEEeccCCcCccccChhhhcCC
Q 005747 459 LGLLSNLQTLSLYNCKLLDIT---VIRDLKKLEVLCLRGSDIKR---LPVEVGELTLLRLLDLRDCRELEIIPPNVLSKL 532 (679)
Q Consensus 459 ~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~i~~---lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l 532 (679)
=+++.+|+...|.++....++ ....+++++.|||++|-+.. +-.-...|++|+.|+|+.|.+.-......-..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 357788999999999987753 57889999999999996663 334457899999999999885433333222357
Q ss_pred cccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeec-CCCCCCcc-cccccceeEEEEcCccccccccccccE
Q 005747 533 SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTLPRGL-FLEKLERYKILIGGVWGWEYADIWCRE 610 (679)
Q Consensus 533 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~lp~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~ 610 (679)
++|+.|.++.|.++ |. .+...+..+++|+.|+|..|. +..-.... .++.|+.|++++|++..++...
T Consensus 197 ~~lK~L~l~~CGls-~k-----~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~----- 265 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS-WK-----DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY----- 265 (505)
T ss_pred hhhheEEeccCCCC-HH-----HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-----
Confidence 88999999999885 21 233345567899999999884 22111111 5778888888877765543211
Q ss_pred EEEecCccccchHHHHHHhcccceeecccccccccccccccc--CcCCCCCccEEEEecCcCccCCC
Q 005747 611 FKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNEL--DKVGPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 611 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l--~~~~~~~L~~L~l~~n~l~~lp~ 675 (679)
....||.|+.|+++.|.+..+...+.+. ....||+|++|+++.|++...|+
T Consensus 266 --------------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 266 --------------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred --------------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 2234788999999988765554332211 02558999999999999976654
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=3.2e-10 Score=120.91 Aligned_cols=153 Identities=29% Similarity=0.428 Sum_probs=110.3
Q ss_pred CceEEEEeecccCCCCCccccCCC-CCCEEEcCCCCCCCc-hhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLS-NLQTLSLYNCKLLDI-TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~ 517 (679)
..++.|++.+|.++.+|+....+. +|+.|++++|.+..+ ..++.+++|+.|++++|+++.+|...+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 467888888888888887777774 888888888888875 578888888888888888888887777888888888888
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEc
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIG 596 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~ 596 (679)
|+ +..+|.. +..+..|++|.+++|... ..+..+.++.++..|.+.+|++..++..+ .+++|+.|+++.|
T Consensus 196 N~-i~~l~~~-~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 196 NK-ISDLPPE-IELLSALEELDLSNNSII--------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred Cc-cccCchh-hhhhhhhhhhhhcCCcce--------ecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 77 6777775 345666888888887431 23445566666666666666666555444 5556666666666
Q ss_pred Cccccc
Q 005747 597 GVWGWE 602 (679)
Q Consensus 597 ~~~~~~ 602 (679)
.+..+.
T Consensus 266 ~i~~i~ 271 (394)
T COG4886 266 QISSIS 271 (394)
T ss_pred cccccc
Confidence 655544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=3.4e-09 Score=120.87 Aligned_cols=105 Identities=34% Similarity=0.434 Sum_probs=64.6
Q ss_pred CCCCCEEEcCCCC--CCCc--hhhcCCCCCcEEEcccc-cccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccc
Q 005747 462 LSNLQTLSLYNCK--LLDI--TVIRDLKKLEVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLE 536 (679)
Q Consensus 462 l~~L~~L~L~~n~--l~~~--~~~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~ 536 (679)
++.|++|-+.+|. +..+ ..|..++.|++|||++| .+..+|.+|+.|-+|++|+++++. +..+|.+ +.+|.+|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~-l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSG-LGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchH-HHHHHhhh
Confidence 3456666666664 3332 23666777777777765 455677777777777777777655 5566766 66777777
Q ss_pred eeecCCCCCCcchhhhcccccccccccCCCcEEEEEeec
Q 005747 537 ELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD 575 (679)
Q Consensus 537 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 575 (679)
+|++..+.. ...+|..+..|++|++|.+....
T Consensus 622 ~Lnl~~~~~-------l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGR-------LESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccc-------cccccchhhhcccccEEEeeccc
Confidence 777766543 22234445556777777666443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=3.6e-10 Score=120.68 Aligned_cols=106 Identities=29% Similarity=0.349 Sum_probs=89.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
.++..|++.+|.+..+...+..+++|++|++++|.|+.+..+..++.|+.|++++|.|+.++ .+..+++|+.+++++|.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNR 173 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCcch
Confidence 68999999999999887658889999999999999999999999999999999999999877 46669999999999988
Q ss_pred CccccCh-hhhcCCcccceeecCCCCCCcc
Q 005747 520 ELEIIPP-NVLSKLSHLEELYMGPRSFDKW 548 (679)
Q Consensus 520 ~~~~lp~-~~~~~l~~L~~L~l~~n~~~~~ 548 (679)
+..+.. . ...+.+|+.+.+.+|.+..+
T Consensus 174 -i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 174 -IVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred -hhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 444444 2 36788999999999987543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=2e-10 Score=122.72 Aligned_cols=190 Identities=24% Similarity=0.236 Sum_probs=135.9
Q ss_pred ceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchh-hcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 441 QVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITV-IRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
.+..+++..|.+..+-..+..+++|..|++.+|.+..+.. +..+++|++|+|++|.|+.+. ++..++.|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 4566667888888755568889999999999999999888 999999999999999999887 48888889999999988
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..++. +..+++|+.+++++|.+...+.. . ...+.+|+.+.+..|.+..+.....+..+..+++..|.+.
T Consensus 152 -i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 152 -ISDISG--LESLKSLKLLDLSYNRIVDIEND------E-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred -chhccC--CccchhhhcccCCcchhhhhhhh------h-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccce
Confidence 666654 67799999999999998544220 1 5778888999999998886655444555555566666555
Q ss_pred cccccccc----ccEEEEecCccccchHHHHHHhcccceeecccccc
Q 005747 600 GWEYADIW----CREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEE 642 (679)
Q Consensus 600 ~~~~~~~~----l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 642 (679)
........ ++.+++..+.....+ .....+..+..|++.+|++
T Consensus 222 ~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 222 KLEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred eccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccc
Confidence 54432221 455555554443332 1122245566666666553
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=1.1e-07 Score=97.56 Aligned_cols=189 Identities=17% Similarity=0.128 Sum_probs=108.4
Q ss_pred ccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHH
Q 005747 130 EAFESRMSILNEITDALK-----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIAD 204 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 204 (679)
.+|+|+++.++.|..++. ......+.++|++|+|||+||+.+++..... + .++..+......++. ..+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHHH
Confidence 578999999999988886 3445678899999999999999999987542 2 222222111222222 2223
Q ss_pred HhCCCC----Cccc--hhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhccc-CCC
Q 005747 205 KLGLKF----DEES--ESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTK-MDS 277 (679)
Q Consensus 205 ~l~~~~----~~~~--~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~-~~~ 277 (679)
.++... ++.. .......+...+. +.+..+|+|+..+...+.. .. .+.+-|..||+...+.... ...
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc
Confidence 332211 0000 0111122332332 3445566666544443331 11 1244556666654332110 112
Q ss_pred cceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 278 QKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 278 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
...+++++++.++..+++.+.+...... --.+....|++.|+|.|-.+..++..
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 3578999999999999999887632211 12466788999999999766555443
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.84 E-value=4.7e-08 Score=95.13 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=92.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
..+.+.+||++|+|||+|++.+++....+ ...+.|+.+.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--
Confidence 34678999999999999999999986543 3345677664210 000 01122222
Q ss_pred CceEEEEecCCCc---cchhh-cCCCCCC-CCCCcEEEEeecCc----------chhcccCCCcceEEecCCChHHHHHH
Q 005747 230 KRILVILDNIWGN---LDLKA-AGIPHGD-DHRGCKVLLTARSL----------DTLSTKMDSQKNFSVSFLKEEEAWSL 294 (679)
Q Consensus 230 k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtR~~----------~v~~~~~~~~~~~~l~~L~~~e~~~L 294 (679)
+.-+|++||+|.. ..|+. +...+.. ...|..+||+|.+. ++.. .+.....++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 3359999999864 34442 2111211 12355565554442 2322 244567899999999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 295 FKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 295 f~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
+.+.+....-. --+++..-|++.+.|..-++..+-
T Consensus 170 L~~~a~~~~l~-l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 170 LQRNAYQRGIE-LSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHH
Confidence 99888633211 114677788888887765554433
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=7.3e-08 Score=102.58 Aligned_cols=180 Identities=18% Similarity=0.248 Sum_probs=109.3
Q ss_pred CCcccccchHHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHH
Q 005747 127 KDYEAFESRMSILNE---ITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREI 202 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i 202 (679)
.....++|++..+.. +..++.....+.+.++|++|+||||+|+.+++..... | +.++... ...+ .+.+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~-ir~i 80 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKD-LREV 80 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHH-HHHH
Confidence 344568898888666 8888887778889999999999999999999876532 2 2222211 1111 1222
Q ss_pred HHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEe--ecCcc--hhcccCC
Q 005747 203 ADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLT--ARSLD--TLSTKMD 276 (679)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT--tR~~~--v~~~~~~ 276 (679)
++. .......+++.+|++|+++... +.+.+...+. .|..+++. |.+.. +......
T Consensus 81 i~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 81 IEE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 211 1111223578999999998653 3333333322 24444443 33321 1111122
Q ss_pred CcceEEecCCChHHHHHHHHHHhCCCC-CC-ccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 005747 277 SQKNFSVSFLKEEEAWSLFKKMAGDYV-EG-NELKEVARDVAKECAGLPVAIVTVATAL 333 (679)
Q Consensus 277 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~-~~~~~~~~~I~~~~~glPlai~~~~~~L 333 (679)
....+.+.+++.++.+.++.+.+.... .. .--.+....|++.|+|.+..+..+....
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 346899999999999999988654211 11 1224667889999999987765544433
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=7.8e-10 Score=107.56 Aligned_cols=228 Identities=15% Similarity=0.092 Sum_probs=131.4
Q ss_pred CceEEEEeecccCC-----CCCccccCCCCCCEEEcCCCCCCC-----c-------hhhcCCCCCcEEEccccccc-c--
Q 005747 440 EQVRVINVSYMNLL-----SLPSSLGLLSNLQTLSLYNCKLLD-----I-------TVIRDLKKLEVLCLRGSDIK-R-- 499 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~L~~n~l~~-----~-------~~~~~l~~L~~L~L~~n~i~-~-- 499 (679)
.+++.++||+|.+. .+.+.+.+.++|+.-+++.--... | +.+-..++|++||||.|.+. .
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 56788888888775 244456666677777776432111 1 23445667888888887665 2
Q ss_pred --cchhhhcCcCCCEEeccCCcCccccChhh-------------hcCCcccceeecCCCCCCcchhhhcccccccccccC
Q 005747 500 --LPVEVGELTLLRLLDLRDCRELEIIPPNV-------------LSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK 564 (679)
Q Consensus 500 --lp~~i~~l~~L~~L~l~~n~~~~~lp~~~-------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 564 (679)
+-.-+..+..|++|.|.+|. ++...... ...-++|+++....|.+-.... ..+...|...+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga---~~~A~~~~~~~ 185 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA---TALAEAFQSHP 185 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH---HHHHHHHHhcc
Confidence 22234567778888887776 43322221 2344677777777777643221 12334455567
Q ss_pred CCcEEEEEeecCCC--C---CCcc-cccccceeEEEEcCcccc--------ccccccccEEEEecCc-----cccchHHH
Q 005747 565 HLISLELQIQDVNT--L---PRGL-FLEKLERYKILIGGVWGW--------EYADIWCREFKIDLDS-----KIRLKDGL 625 (679)
Q Consensus 565 ~L~~L~l~~n~l~~--l---p~~~-~l~~L~~L~l~~~~~~~~--------~~~~~~l~~l~l~~~~-----~~~~~~~~ 625 (679)
.|+.+.+++|.|.. + ...+ ++++|+.|++..|.+..- .+..+.++.++++.+. ...+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 77777777777652 2 1112 667777777766654332 1222245555553322 22223344
Q ss_pred HHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 626 ILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 626 ~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
....|+|+.|.|.+|.|+.-....-.......|.|+.|+|++|.+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4457899999999988553322211112244789999999999984
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=1.3e-08 Score=113.82 Aligned_cols=103 Identities=28% Similarity=0.357 Sum_probs=53.8
Q ss_pred CCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecC
Q 005747 465 LQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMG 541 (679)
Q Consensus 465 L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~ 541 (679)
++.|+|++|.+.+ ++.++++++|+.|+|++|.++ .+|..++.+++|+.|+|++|++.+.+|.. ++++++|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 4445555555544 344555555555555555554 45555555555555555555555555544 4555555555555
Q ss_pred CCCCCcchhhhccccccccccc-CCCcEEEEEeec
Q 005747 542 PRSFDKWEVEVEGVKNASLHEL-KHLISLELQIQD 575 (679)
Q Consensus 542 ~n~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~ 575 (679)
+|.+ .+.+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSL-------SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcc-------cccCChHHhhccccCceEEecCCc
Confidence 5555 44455444432 344455555543
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.77 E-value=3e-07 Score=94.94 Aligned_cols=191 Identities=16% Similarity=0.075 Sum_probs=106.8
Q ss_pred CCcccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALK-----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.....|+|+++.++.+..++. ....+.+.++|++|+|||++|+.+++..... + .++..+.. .....+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~-~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPAL-EKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccc-cChHHHHH
Confidence 456789999999999887775 3345678899999999999999999987543 1 12222211 11112223
Q ss_pred HHHHhCCCCC-ccch-----hHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhcc-c
Q 005747 202 IADKLGLKFD-EESE-----SGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLST-K 274 (679)
Q Consensus 202 i~~~l~~~~~-~~~~-----~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-~ 274 (679)
++..++...- -.++ ....+.+...+. +.+..+|+|+..+...+.. .+ .+.+-|..|++...+... .
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHH
Confidence 3333321110 0000 001111222222 3345555555433322211 11 123445566664333211 0
Q ss_pred CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 005747 275 MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVAT 331 (679)
Q Consensus 275 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~ 331 (679)
......+++++++.++..+++.+.+...... --.+....|++.|+|.|-.+..+..
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHH
Confidence 1123578999999999999999887643221 1246788999999999965554444
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=1.4e-08 Score=113.61 Aligned_cols=103 Identities=24% Similarity=0.358 Sum_probs=63.3
Q ss_pred CcEEEccccccc-ccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCC
Q 005747 487 LEVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH 565 (679)
Q Consensus 487 L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~ 565 (679)
++.|+|++|.++ .+|..++.+++|+.|+|++|.+.+.+|.. ++.+++|+.|+|++|.+ .+.+|..++++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCCC
Confidence 556666666665 55666666666666666666655666655 56666666666666666 5556666666666
Q ss_pred CcEEEEEeecCC-CCCCcc--cccccceeEEEEcC
Q 005747 566 LISLELQIQDVN-TLPRGL--FLEKLERYKILIGG 597 (679)
Q Consensus 566 L~~L~l~~n~l~-~lp~~~--~l~~L~~L~l~~~~ 597 (679)
|+.|+|++|.++ .+|..+ .+.++..+++..|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 666666666665 555544 22344455555443
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=8.4e-07 Score=96.98 Aligned_cols=187 Identities=15% Similarity=0.197 Sum_probs=116.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCC-------------------CCCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDK-------------------LFDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 186 (679)
....+++|.+..++.|.+++..++ .+.+.++|..|+||||+|+.+.+...-.. .|..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 345678999999999999998766 45668999999999999999988754211 1222333
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 264 (679)
++.+....++++ +++++.+. ..-..++.-++|||++.... .+..+...+.......++|++
T Consensus 93 IDAas~rgVDdI-ReLIe~a~----------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 93 MDAASNRGVDEM-AALLERAV----------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred ecccccccHHHH-HHHHHHHH----------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 333322222221 11211110 00112455689999997653 355554444444457788888
Q ss_pred ecCcchh-cccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh-HHHHHHHH
Q 005747 265 ARSLDTL-STKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP-VAIVTVAT 331 (679)
Q Consensus 265 tR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP-lai~~~~~ 331 (679)
|++..-. .........+.+.+++.++..+.+.+.+..+...- -.+....|++.++|.. -|+..+-.
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8764433 22234457899999999999999988775322111 2466778999998855 45554333
No 53
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.73 E-value=1.2e-06 Score=96.34 Aligned_cols=204 Identities=19% Similarity=0.171 Sum_probs=120.7
Q ss_pred ccccchHHHHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHHHhccC---CCC--CeEEEEEcCCCcCHHHHH
Q 005747 130 EAFESRMSILNEITDALK----N-GDVNTLGIYGIGGIGKTTLAKEVARRAEND---KLF--DQVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F--~~~~wv~v~~~~~~~~l~ 199 (679)
..+.||++++++|..+|. . +...++.|+|++|.|||++++.|.+..... ... -.+++|++....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 456799999999998886 2 233578899999999999999998875421 112 236788888777889999
Q ss_pred HHHHHHhCCCCC--ccchhHHHHHHHHHHHc--CCceEEEEecCCCcc--chhhcCCCCC-CCCCCcEEEE--eecCcch
Q 005747 200 REIADKLGLKFD--EESESGRARRLHDRLKK--EKRILVILDNIWGNL--DLKAAGIPHG-DDHRGCKVLL--TARSLDT 270 (679)
Q Consensus 200 ~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~--~~~~l~~~~~-~~~~gs~iiv--TtR~~~v 270 (679)
..|.+++..... ..........+...+.. +...+||||+++... .-+.+...+. ....+++|+| +|...+.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 999998843322 11223345555555532 234589999987542 1111111111 1123455544 3332111
Q ss_pred h----c---ccCCCcceEEecCCChHHHHHHHHHHhCCC---CCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 005747 271 L----S---TKMDSQKNFSVSFLKEEEAWSLFKKMAGDY---VEGNELKEVARDVAKECAGLPVAIVTVATALR 334 (679)
Q Consensus 271 ~----~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~ 334 (679)
. . ..+ ....+...|++.++-.+++..++... ..+..++-+|+.++...|-.-.|+.++-.+..
T Consensus 915 perLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 1 111 12346779999999999999988632 12222333444444444445566665555443
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.72 E-value=3.4e-07 Score=95.48 Aligned_cols=199 Identities=14% Similarity=0.113 Sum_probs=112.3
Q ss_pred CcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC-eEEEEEcCCCcCH--HHHHH--HH
Q 005747 128 DYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFD-QVVFSEVSESQDI--RKIQR--EI 202 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~--~~l~~--~i 202 (679)
....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++..... .+. ..+++++++..+. ..+.. ..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcch
Confidence 346788999999999999987776778999999999999999999876532 122 2445555432110 00000 00
Q ss_pred HHHhCCC-CCccchhHHHHHHHHHHH-----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcc
Q 005747 203 ADKLGLK-FDEESESGRARRLHDRLK-----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLST 273 (679)
Q Consensus 203 ~~~l~~~-~~~~~~~~~~~~l~~~l~-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~ 273 (679)
.+.++.. .......+....+.+... .+.+-+||+||+.... ....+...+......+++|+||.... +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 0000000 000011122222222221 1334589999996542 12223222222334567888775432 2221
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
.......+++.+++.++...++...+...... --.+....+++.++|.+-.+..
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 12234578999999999999988876532211 1246778888999887655443
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.71 E-value=3.1e-07 Score=91.83 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=102.1
Q ss_pred CcccccchHHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC-HHHHHHHHH
Q 005747 128 DYEAFESRMSIL---NEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD-IRKIQREIA 203 (679)
Q Consensus 128 ~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i~ 203 (679)
.-.+++|.+..+ .-|..++..+.+.-..+||++|+||||||+.+....... |..++-..+ ++++ ++++
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdl-r~i~ 93 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDL-REII 93 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHH-HHHH
Confidence 334555555433 234455567888888899999999999999999876543 333333332 2322 2222
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEE--eecCcchh--cccCCC
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLL--TARSLDTL--STKMDS 277 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~v~--~~~~~~ 277 (679)
+ .-.+....|++.+|++|.|..- .+-+.+ +|.-.+|.-|+| ||.+.... .-....
T Consensus 94 e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 94 E----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred H----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 1 1122223478999999999643 333333 233456777777 44432211 112334
Q ss_pred cceEEecCCChHHHHHHHHHHhCCC-C--C--Cc-cHHHHHHHHHHHcCCChHH
Q 005747 278 QKNFSVSFLKEEEAWSLFKKMAGDY-V--E--GN-ELKEVARDVAKECAGLPVA 325 (679)
Q Consensus 278 ~~~~~l~~L~~~e~~~Lf~~~~~~~-~--~--~~-~~~~~~~~I~~~~~glPla 325 (679)
..++++++|+.++-.+++.+.+... . . .. --++...-++..++|---+
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 5799999999999999998844211 1 1 11 1245667788888886543
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5.3e-07 Score=92.44 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=115.6
Q ss_pred ccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc----cCCCCCeEEEEEc-CCCcCHHHHHHHHH
Q 005747 130 EAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAE----NDKLFDQVVFSEV-SESQDIRKIQREIA 203 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-~~~~~~~~l~~~i~ 203 (679)
..++|.+..++.+..++..+. .+...++|+.|+||||+|+.+++..- ...|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 456799999999999998665 45778999999999999999998642 2346676555442 333344442 3333
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCC--CccchhhcCCCCCCCCCCcEEEEeecCcchh-cccCCCcce
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIW--GNLDLKAAGIPHGDDHRGCKVLLTARSLDTL-STKMDSQKN 280 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~ 280 (679)
+.+..... .+++-++|+|++. +...+..+...+.....++.+|++|.+.+.+ .........
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322110 1344566666654 4456777776776666788888888765433 222334568
Q ss_pred EEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 281 FSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 281 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
+++.++++++....+.+..... -.+.+..++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999988776654311 12446778899999886554
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.5e-08 Score=75.87 Aligned_cols=60 Identities=30% Similarity=0.483 Sum_probs=37.9
Q ss_pred CCCcEEEcccccccccch-hhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCC
Q 005747 485 KKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSF 545 (679)
Q Consensus 485 ~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~ 545 (679)
++|++|++++|+++.+|. .+..+++|++|++++|. +..+|++.|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666666654 45566666666666665 4555555566666677766666653
No 58
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=6.3e-07 Score=102.91 Aligned_cols=260 Identities=15% Similarity=0.173 Sum_probs=152.6
Q ss_pred ccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCCeEEEEEcCCCcC---HHHHHHHHHH
Q 005747 132 FESRMSILNEITDALK---NGDVNTLGIYGIGGIGKTTLAKEVARRAEND-KLFDQVVFSEVSESQD---IRKIQREIAD 204 (679)
Q Consensus 132 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~---~~~l~~~i~~ 204 (679)
++||+.+++.|...+. .+...++.+.|.+|||||+|+++|......+ +.|-...+-....+.. ..+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999999886 5667799999999999999999999986644 2221111111112111 2223333333
Q ss_pred Hh-------------------CCCCC---------------c--------cchhHH-----HHHHHHHHHcCCceEEEEe
Q 005747 205 KL-------------------GLKFD---------------E--------ESESGR-----ARRLHDRLKKEKRILVILD 237 (679)
Q Consensus 205 ~l-------------------~~~~~---------------~--------~~~~~~-----~~~l~~~l~~~k~~LlVlD 237 (679)
++ |.... . .....+ ...+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 21100 0 000011 1122223335679999999
Q ss_pred cCCCccc-----hhhcCCCCCC---CCCCcEEEEeecCc-chhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccH
Q 005747 238 NIWGNLD-----LKAAGIPHGD---DHRGCKVLLTARSL-DTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNEL 308 (679)
Q Consensus 238 dv~~~~~-----~~~l~~~~~~---~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 308 (679)
|+.-.+. ++.+...... ..+..-.+.|.+.. ............+.+.||+..+...+.....+..... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--P 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--c
Confidence 9842211 1111111100 00011122233321 1112233445799999999999999999888753222 2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhcC------CChhHHHHHHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChhHHHH
Q 005747 309 KEVARDVAKECAGLPVAIVTVATALRDN------NSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKN 382 (679)
Q Consensus 309 ~~~~~~I~~~~~glPlai~~~~~~L~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 382 (679)
.+....|+++..|.|+-+.-+-..+..+ .+...|..-..++... +..+.+...+..-.+.||.. .+.
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~kL~~~-t~~ 312 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQKLPGT-TRE 312 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhcCCHH-HHH
Confidence 4778899999999999999999888763 3455565444433221 11233555678889999987 788
Q ss_pred HHHHhccccc-CChhHHHH
Q 005747 383 IFLLIGYTAI-ASIDDLLM 400 (679)
Q Consensus 383 cfl~~s~fp~-~~~~~li~ 400 (679)
.....|++-. |+.+.|..
T Consensus 313 Vl~~AA~iG~~F~l~~La~ 331 (849)
T COG3899 313 VLKAAACIGNRFDLDTLAA 331 (849)
T ss_pred HHHHHHHhCccCCHHHHHH
Confidence 8888888754 66554433
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.65 E-value=2.3e-07 Score=90.66 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc
Q 005747 134 SRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE 213 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~ 213 (679)
+....++.+.+++.....+.+.|+|..|+|||++|+.+++..... ....+|++++.-.+.. .
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~---~------------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQAD---P------------- 82 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhH---H-------------
Confidence 456678888887766667889999999999999999999886533 3345666655432110 0
Q ss_pred chhHHHHHHHHHHHcCCceEEEEecCCCcc---chh-hcCCCCCC-CCCCcEEEEeecCcchh--------cccCCCcce
Q 005747 214 SESGRARRLHDRLKKEKRILVILDNIWGNL---DLK-AAGIPHGD-DHRGCKVLLTARSLDTL--------STKMDSQKN 280 (679)
Q Consensus 214 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtR~~~v~--------~~~~~~~~~ 280 (679)
.+...+. +.-+||+||++... .|. .+...+.. ...+.++|+||+..... .........
T Consensus 83 -------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 83 -------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred -------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 1111122 23489999997543 222 22221111 12334788888753211 111222468
Q ss_pred EEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 005747 281 FSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVAT 331 (679)
Q Consensus 281 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~ 331 (679)
+++.++++++...++...+..... .--++..+.+++.+.|.|..+..+..
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999999998876532111 11135567777788888876665543
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.7e-09 Score=102.76 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=92.5
Q ss_pred CCCCCCEEEcCCCCCCCc----hhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEeccCCcCccccChhhhcCCccc
Q 005747 461 LLSNLQTLSLYNCKLLDI----TVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCRELEIIPPNVLSKLSHL 535 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L 535 (679)
.++.++.|||.+|.+++. ..+.+++.|++|+|+.|.+...-.+. ..+.+|+.|-|.+..+...-....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 456677777777777663 22456777777777777655221122 3456677777766554333333345666667
Q ss_pred ceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC---CCCcc-cccccceeEEEEcCccccccccccccEE
Q 005747 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT---LPRGL-FLEKLERYKILIGGVWGWEYADIWCREF 611 (679)
Q Consensus 536 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l 611 (679)
+.|+++.|.+..+..+-....+ + -+.+.+|+.-.|.... +-... -++++..+.+..|.+....
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~--~--s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s--------- 215 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIED--W--STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES--------- 215 (418)
T ss_pred hhhhhccchhhhhccccccccc--c--chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh---------
Confidence 7777776644322110000000 0 0122222222221110 00000 2344444444333322211
Q ss_pred EEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 612 KIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 612 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
.+.-+..+|.+.-|+|+.+++..+.++ +.+ .+||+|..|.+++|||..
T Consensus 216 ----------~ek~se~~p~~~~LnL~~~~idswasv-D~L--n~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 216 ----------SEKGSEPFPSLSCLNLGANNIDSWASV-DAL--NGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ----------hcccCCCCCcchhhhhcccccccHHHH-HHH--cCCchhheeeccCCcccc
Confidence 011122356667777887776666665 455 778888888888888753
No 61
>PF13173 AAA_14: AAA domain
Probab=98.62 E-value=8e-08 Score=84.35 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
.+++.|.|+.|+||||++++++++.. ....++|++..+.........+ ....+.+.. .++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhh-ccC
Confidence 47899999999999999999998876 2345778877765332111000 111222221 135
Q ss_pred ceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhcc-----cCCCcceEEecCCChHHH
Q 005747 231 RILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLST-----KMDSQKNFSVSFLKEEEA 291 (679)
Q Consensus 231 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-----~~~~~~~~~l~~L~~~e~ 291 (679)
+.+|++|++.....|......+.+..+..+|++|+.+...... ..+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7899999999888887765555555567899999997555421 223345789999987763
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.62 E-value=7.6e-07 Score=91.50 Aligned_cols=185 Identities=15% Similarity=0.084 Sum_probs=110.5
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC-eEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFD-QVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|.++.++.|.+++..++.+-+.++|++|+||||+|+.+++..... .|. .++-++.++...... .+.+++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHHHHH
Confidence 3456778999999999888887777778899999999999999999886432 122 233333444333332 2222222
Q ss_pred hCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcceEE
Q 005747 206 LGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKNFS 282 (679)
Q Consensus 206 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~ 282 (679)
+..... .+..++.-++++|++.... ....+...+......+++++++.... +..........++
T Consensus 88 ~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 88 FAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 110000 0001446799999997653 22222222222234567777765432 2111112245889
Q ss_pred ecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 283 VSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 283 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
+.++++++....+...+......-. .+....|++.++|-.-.+.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 9999999999998887753222111 4567889999998764433
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.4e-06 Score=91.06 Aligned_cols=180 Identities=14% Similarity=0.208 Sum_probs=110.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCC-------------------CeEEEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLF-------------------DQVVFS 187 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~wv 187 (679)
...+++|.+..++.+...+..++. +.+.++|+.|+||||+|+.+++........ ....++
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 346788999999999998886654 567899999999999999999876421111 111222
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEE
Q 005747 188 EVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKV 261 (679)
Q Consensus 188 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~i 261 (679)
+.+....+. ....+.+.+. .+++-++|+|++.... .+..+...+.......++
T Consensus 94 ~~~~~~~v~---------------------~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 94 DAASRTKVE---------------------EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred cccccCCHH---------------------HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 211111111 1222222221 2455699999997654 345554444444456677
Q ss_pred EEeecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 262 LLTARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 262 ivTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
|++|.+.. +.....+....+++.+++.++..+.+...+......- -++....|++.++|.|-.+...
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 77775433 2222223346899999999999988887664322111 1356778999999988544333
No 64
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.3e-06 Score=86.44 Aligned_cols=199 Identities=21% Similarity=0.242 Sum_probs=129.2
Q ss_pred cccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 131 AFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
.+.+|+++++++...|. ++...-+.|+|..|.|||+.++.+.+.......=..+++|++....+..+++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37799999999988775 34444599999999999999999999976542222289999999999999999999999
Q ss_pred CC-CCCccchhHHHHHHHHHHHc-CCceEEEEecCCCccch--hhcCCCCCCC-CCCcEEEEee--cCcchh-------c
Q 005747 207 GL-KFDEESESGRARRLHDRLKK-EKRILVILDNIWGNLDL--KAAGIPHGDD-HRGCKVLLTA--RSLDTL-------S 272 (679)
Q Consensus 207 ~~-~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~--~~l~~~~~~~-~~gs~iivTt--R~~~v~-------~ 272 (679)
+. +....+..+....+.+.+.. ++.+++|||++.....- +.+...+... ...++|++.. -+.... .
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 63 33344555666677777753 67899999998654221 1221111111 1245444433 322111 1
Q ss_pred ccCCCcceEEecCCChHHHHHHHHHHhC----CCCCCccHHHHHHHHHHHcCC-ChHHHHHHH
Q 005747 273 TKMDSQKNFSVSFLKEEEAWSLFKKMAG----DYVEGNELKEVARDVAKECAG-LPVAIVTVA 330 (679)
Q Consensus 273 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~~~~~~~~I~~~~~g-lPlai~~~~ 330 (679)
...+ ...+...|.+.+|-.+++..++. .....+..-+++..++..-+| .-.|+..+-
T Consensus 178 s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 178 SSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1122 23478899999999999998874 222334444555555555554 444554443
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=3e-08 Score=74.29 Aligned_cols=61 Identities=28% Similarity=0.459 Sum_probs=54.2
Q ss_pred cCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecC
Q 005747 508 TLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV 576 (679)
Q Consensus 508 ~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 576 (679)
++|++|++++|+ +..+|++.|.++++|++|++++|.+ ....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l-------~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNL-------TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSE-------SEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCcc-------CccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999987 7788988899999999999999999 555678899999999999999875
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.60 E-value=1.9e-06 Score=89.15 Aligned_cols=184 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCe-EEEEEcCCCcCHHHHHHHHHHHh
Q 005747 128 DYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQ-VVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
....++|+++.++.+..++..+..+.+.++|..|+||||+|+.+++...... +.. .+-++.+.......+...+ ..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~i-~~~ 92 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRNKI-KEF 92 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHHHH-HHH
Confidence 4456889999999999999877777789999999999999999998864332 211 1222223322222111111 111
Q ss_pred CCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcceEEe
Q 005747 207 GLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKNFSV 283 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l 283 (679)
..... .....+-++++|++.... ....+...+......+++|+++.... +..........+++
T Consensus 93 ~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 93 ARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 10000 001235689999986542 22333322333334567777765322 21111122347899
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
.+++.++....+...+......- -.+....+++.++|.+--+..
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIEI-TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 99999999888888775322111 145678889999998765433
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=7.9e-07 Score=99.11 Aligned_cols=185 Identities=17% Similarity=0.207 Sum_probs=113.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVN-TLGIYGIGGIGKTTLAKEVARRAENDKL-------------------FDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 186 (679)
.....++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++....... |..+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 34567889999999999999876655 4589999999999999999988643211 111222
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 264 (679)
++......+.++ +.|.+.+. ..-..+++-++|+|++... .....+...+.......++|++
T Consensus 93 idAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 93 VDAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred eccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 222211122211 22222211 1111366789999998765 3445544444333445666666
Q ss_pred ecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 265 ARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 265 tR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
|.+ ..+..........+++.+++.++....+.+.+..... .--.+....|++.++|.|--+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 654 3333222334578999999999999999887643211 112456788999999987544433
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=3.5e-08 Score=96.27 Aligned_cols=214 Identities=18% Similarity=0.109 Sum_probs=146.3
Q ss_pred cccCCCCCCEEEcCCCCCCC-----c-hhhcCCCCCcEEEcccc---c-ccccchh-------hhcCcCCCEEeccCCcC
Q 005747 458 SLGLLSNLQTLSLYNCKLLD-----I-TVIRDLKKLEVLCLRGS---D-IKRLPVE-------VGELTLLRLLDLRDCRE 520 (679)
Q Consensus 458 ~~~~l~~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~L~~n---~-i~~lp~~-------i~~l~~L~~L~l~~n~~ 520 (679)
.+-.+..++.|+|++|.+.. + +.+.+.++|+..+++.- + ..++|+. +...++|++|+||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34567889999999999875 1 56778889999999863 2 2256654 34567999999999986
Q ss_pred ccccChh---hhcCCcccceeecCCCCCCcchhhhccc------ccccccccCCCcEEEEEeecCCCCCCcc------cc
Q 005747 521 LEIIPPN---VLSKLSHLEELYMGPRSFDKWEVEVEGV------KNASLHELKHLISLELQIQDVNTLPRGL------FL 585 (679)
Q Consensus 521 ~~~lp~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~------~~~~l~~l~~L~~L~l~~n~l~~lp~~~------~l 585 (679)
-...++. .++.+++|++|.|.+|.+.......-+. ...-...-++|+++..+.|.+..-+... ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 5444443 4677899999999999885432211000 2233445578999999999998655432 56
Q ss_pred cccceeEEEEcCccccc--------cccccccEEEEecCccccchH----HHHHHhcccceeecccccccc--ccccccc
Q 005747 586 EKLERYKILIGGVWGWE--------YADIWCREFKIDLDSKIRLKD----GLILKLQGIEDLWLSDLEERD--VNYFVNE 651 (679)
Q Consensus 586 ~~L~~L~l~~~~~~~~~--------~~~~~l~~l~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~--l~~i~~~ 651 (679)
+.|+.+.+..|.+..-. ...++++.|+|+.|.....-. .....+++|+.|++++|.+.. ...+...
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 78999999988765432 223567777777765543221 223346789999999997322 2223233
Q ss_pred cCcCCCCCccEEEEecCcCcc
Q 005747 652 LDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 652 l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+ ...+|+|+.|.+.+|.++.
T Consensus 265 l-~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 265 L-KESAPSLEVLELAGNEITR 284 (382)
T ss_pred H-hccCCCCceeccCcchhHH
Confidence 3 3458999999999999874
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=98.59 E-value=4.1e-06 Score=91.08 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=112.5
Q ss_pred CCcccccchHHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKN----GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++.++.++..+...+ ..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i-~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVI-ERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHH-HHH
Confidence 4456789999999999999862 2267899999999999999999999874 22 344555554333322 222
Q ss_pred HHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc------hhhcCCCCCCCCCCcEEEEeecCcchhc--cc
Q 005747 203 ADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD------LKAAGIPHGDDHRGCKVLLTARSLDTLS--TK 274 (679)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtR~~~v~~--~~ 274 (679)
+....... .+...++-+||+|+++.... +..+...+. ..+..||+|+.+..-.. ..
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 22211100 01112568999999976422 233322221 22345666665422111 11
Q ss_pred CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 005747 275 MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALR 334 (679)
Q Consensus 275 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~ 334 (679)
......+++.+++.++....+...+......-. .+....|++.++|-.-.+......+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 223468899999999999988887653222111 46788899999997665554443343
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.8e-06 Score=92.70 Aligned_cols=178 Identities=15% Similarity=0.210 Sum_probs=111.4
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCC-----------------------C
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLF-----------------------D 182 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----------------------~ 182 (679)
.....++|.+..+..|...+..+. .+.+.++|+.|+||||+|+.+++...-.... .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 345677899999999988777655 3688999999999999999999876422111 0
Q ss_pred eEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCC
Q 005747 183 QVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDH 256 (679)
Q Consensus 183 ~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 256 (679)
.++.++......+.+ +..+.+... .+++-++|+|+++.. ..+..+...+....
T Consensus 98 Dv~eidaas~~~vd~---------------------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp 156 (507)
T PRK06645 98 DIIEIDAASKTSVDD---------------------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP 156 (507)
T ss_pred cEEEeeccCCCCHHH---------------------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC
Confidence 112222222222222 222222221 256679999999875 34666654454444
Q ss_pred CCcEEEEee-cCcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 257 RGCKVLLTA-RSLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 257 ~gs~iivTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
+.+.+|++| +...+..........+++.+++.++....+...+.......+ .+....|++.++|.+--+
T Consensus 157 ~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 566666544 444443322234468999999999999999988763322111 355677999999977444
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=9e-07 Score=95.46 Aligned_cols=181 Identities=14% Similarity=0.196 Sum_probs=114.4
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC------------------------CC
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK------------------------LF 181 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F 181 (679)
....+++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+...-.. .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 3456789999999999999987764 4678999999999999999998764210 01
Q ss_pred CeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHH----HcCCceEEEEecCCCc--cchhhcCCCCCCC
Q 005747 182 DQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRL----KKEKRILVILDNIWGN--LDLKAAGIPHGDD 255 (679)
Q Consensus 182 ~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~ 255 (679)
..+++++......++ .+..+.+.+ ..++.-++|+|++... ..+..+...+..-
T Consensus 93 pDviEIdAas~~gVD---------------------dIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 93 VDYIEMDAASNRGVD---------------------EMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred CcceEecccccCCHH---------------------HHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 112233222222222 222222222 1356679999999765 3455555555444
Q ss_pred CCCcEEEEeecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 256 HRGCKVLLTARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 256 ~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
..++++|++|.+ ..+..........+.+..++.++..+.+.+.+....... -.+..+.|++.++|.|.-...+
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 455666665554 444333333457899999999999998887764322111 1345678899999998655444
No 72
>PTZ00202 tuzin; Provisional
Probab=98.57 E-value=3.6e-06 Score=85.89 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCCCcccccchHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 125 PNKDYEAFESRMSILNEITDALKN---GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.+.+...|+||+.+...+...|.+ +..+++.|.|++|+|||||++.+..... + ...+++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 456778999999999999998863 2346899999999999999999996654 1 13334433 67999999
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHH----c-CCceEEEEecCCCccchhhc---CCCCCCCCCCcEEEEeecCcch--h
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLK----K-EKRILVILDNIWGNLDLKAA---GIPHGDDHRGCKVLLTARSLDT--L 271 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~iivTtR~~~v--~ 271 (679)
|+.+||.+.. ....+....+.+.+. . |++.+||+-= .+-..+..+ ...+.....-|.|++----+.. +
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9999998432 222344455555443 2 6777777742 111111111 0111122334556653322211 1
Q ss_pred cccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 272 STKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 272 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
......-.-|.+.+++.++|.++..+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1223334578899999999988766543
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=6.6e-07 Score=80.72 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc
Q 005747 133 ESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE 212 (679)
Q Consensus 133 ~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~ 212 (679)
.|++..+..+...+.....+.+.|+|.+|+|||++++.+++..... -..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3788889999998877667889999999999999999999987532 2346777766544333222111100
Q ss_pred cchhHHHHHHHHHHHcCCceEEEEecCCCc-----cchhhcCCCCCC---CCCCcEEEEeecCc
Q 005747 213 ESESGRARRLHDRLKKEKRILVILDNIWGN-----LDLKAAGIPHGD---DHRGCKVLLTARSL 268 (679)
Q Consensus 213 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~iivTtR~~ 268 (679)
............++.++|+||++.. ..+......+.. ...+..+|+||...
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0001111112246789999999853 122222222211 13577888888764
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.6e-09 Score=114.48 Aligned_cols=129 Identities=26% Similarity=0.331 Sum_probs=99.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n 518 (679)
..|.+.++++|.+..+..++.-++.|+.|+|++|++++...+..+++|++|||++|.+..+|. +...+. |+.|.+++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 357777888888888878888888999999999999888888899999999999999888875 222333 889999987
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
. ++.+-. +.+|.+|+.||++.|.+.... -...+..|..|+.|.|.+|.+--
T Consensus 243 ~-l~tL~g--ie~LksL~~LDlsyNll~~hs------eL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 A-LTTLRG--IENLKSLYGLDLSYNLLSEHS------ELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred H-HHhhhh--HHhhhhhhccchhHhhhhcch------hhhHHHHHHHHHHHhhcCCcccc
Confidence 7 555443 678899999999998875431 12345667778888888888753
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=3.3e-07 Score=80.98 Aligned_cols=116 Identities=26% Similarity=0.324 Sum_probs=80.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC---CCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-cchhHHHHHHHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEND---KLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-ESESGRARRLHDR 225 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 225 (679)
+.+.+.|+|.+|+|||++++.+.+..... ..-..++|+.++...+...+...|++.++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999986421 0023477999988889999999999999987665 4455566778888
Q ss_pred HHcCCceEEEEecCCCc-c--chhhcCCCCCCCCCCcEEEEeecC
Q 005747 226 LKKEKRILVILDNIWGN-L--DLKAAGIPHGDDHRGCKVLLTARS 267 (679)
Q Consensus 226 l~~~k~~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTtR~ 267 (679)
+.+.+..+||+|++... . .++.+..... ..+.++|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 87666679999998664 2 2333322221 566678877765
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.8e-06 Score=91.72 Aligned_cols=196 Identities=16% Similarity=0.121 Sum_probs=112.1
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
...+++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...-.+.+...+|.|.+... +.......+..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEe
Confidence 345788999999999999886664 466999999999999999999886532222223333221100 000000000000
Q ss_pred CCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecC-cchhcccCCCcc
Q 005747 207 GLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARS-LDTLSTKMDSQK 279 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~ 279 (679)
+. ......+.+..+.+.+. .+++-++|+|+++... .+..+...+........+|++|.. ..+.........
T Consensus 91 ~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 91 DA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred cc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 00 00001111222222221 2456799999997552 355554444443445555655543 333222233456
Q ss_pred eEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 280 NFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 280 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
.+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 899999999999999988775322211 24667889999999885443
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.5e-06 Score=93.91 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=112.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCC-------------------CCCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDK-------------------LFDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 186 (679)
.....++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.+++...-.. .|..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 345678999999999999998666 46779999999999999999988754211 1112223
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 264 (679)
++.+....+.++ +.++..+. ..-..+++-++|+|++.... ....+...+.....+.++|++
T Consensus 92 IDAAs~~~VddI-Reli~~~~----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 92 IDAASRTKVEDT-RELLDNVP----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred ecccccCCHHHH-HHHHHHHh----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 332222222221 11211110 00112566799999997652 344444333333455677777
Q ss_pred ecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 265 ARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 265 tR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
|.+.. +..........+++.+++.++..+.+.+.+......- -.+....|++.++|.+-.+.
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 76532 2222234457899999999999998888765322211 14567789999999774443
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=4.9e-06 Score=92.43 Aligned_cols=204 Identities=17% Similarity=0.123 Sum_probs=115.2
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC---CeEEEEEcCC---CcCHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLF---DQVVFSEVSE---SQDIRKIQR 200 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~---~~~~~~l~~ 200 (679)
.....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3455788999999998888876667789999999999999999998876433222 1223443322 112222211
Q ss_pred HH---------------HHHhCCCC----------------Ccc--chhHHHHHHHHHHHcCCceEEEEecCCCc--cch
Q 005747 201 EI---------------ADKLGLKF----------------DEE--SESGRARRLHDRLKKEKRILVILDNIWGN--LDL 245 (679)
Q Consensus 201 ~i---------------~~~l~~~~----------------~~~--~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~ 245 (679)
.+ +...+... ++. -+......+...+. .+++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 11 11112110 000 01123344555554 46677776666544 346
Q ss_pred hhcCCCCCCCCCCcEEEE--eecCcchhcccC-CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 246 KAAGIPHGDDHRGCKVLL--TARSLDTLSTKM-DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 246 ~~l~~~~~~~~~gs~iiv--TtR~~~v~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
..+...+....+...+++ ||++........ .....+.+.+++.++.+.++.+.+......- -.+....|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHCCCcH
Confidence 666655555555555555 555433221111 1234778999999999999998775321111 134555555555544
Q ss_pred hHHHHHHHHH
Q 005747 323 PVAIVTVATA 332 (679)
Q Consensus 323 Plai~~~~~~ 332 (679)
+-|+..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5666655544
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.8e-06 Score=90.90 Aligned_cols=189 Identities=19% Similarity=0.204 Sum_probs=111.1
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKL-------------------FDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 186 (679)
.....++|.+...+.|...+..+.. +.+.++|++|+||||+|+.+++....... +..+..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3456788999998888888887766 56889999999999999999987542110 111222
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 264 (679)
++.+....+.++ ++|.+.... .-..+++-++|+|++... ...+.+...+........+|++
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 333222222222 122221110 001245679999998654 2334443333332334455545
Q ss_pred ecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHHHHh
Q 005747 265 ARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAG-LPVAIVTVATAL 333 (679)
Q Consensus 265 tR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~g-lPlai~~~~~~L 333 (679)
|.+ ..+..........+++.+++.++....+.+.+......- -.+....|++.++| ++.++..+..+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 443 333332233456899999999999998888774321111 14567778887765 567766665543
No 80
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.51 E-value=1.4e-06 Score=81.42 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=91.6
Q ss_pred CCCcccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 126 NKDYEAFESRMSILNEITDALK-----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
|..-.+|+|.++.++.+.-++. ++...-+.+||++|+||||||+-+++..... |. +.+.+.-....++.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl~- 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDLA- 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHHH-
Confidence 3456789999998887655443 3456778999999999999999999998754 31 22221111112111
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--c-------hhhcCCC-CCCCCC-----------Cc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--D-------LKAAGIP-HGDDHR-----------GC 259 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~-------~~~l~~~-~~~~~~-----------gs 259 (679)
.+ ...+ +++-+|.+|++.... + .+..... ....++ =+
T Consensus 94 ~i--------------------l~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AI--------------------LTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HH--------------------HHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HH--------------------HHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11 1222 234566777775431 1 1111000 001111 12
Q ss_pred EEEEeecCcchhcc-cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 260 KVLLTARSLDTLST-KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 260 ~iivTtR~~~v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
-|=-|||...+-+. ........+++..+.+|-.++..+.+.-... +--++.+.+|+++|.|-|--+.-+-..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34457776444321 1122345689999999999999887653222 222578999999999999755544333
No 81
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=1.8e-07 Score=94.18 Aligned_cols=234 Identities=23% Similarity=0.243 Sum_probs=156.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCC-CeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLF-DQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
..|.+.++|.|||||||++-.+.. .... | +.++++......+...+.......++.... +.......+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--~g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQ--PGDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccc--cchHHHHHHHHHHh-
Confidence 357899999999999999999988 4332 6 668888888888888888888887876543 22233444555554
Q ss_pred CCceEEEEecCCCccc-hhhcCCCCCCCCCCcEEEEeecCcchhcccCCCcceEEecCCChH-HHHHHHHHHhCCC----
Q 005747 229 EKRILVILDNIWGNLD-LKAAGIPHGDDHRGCKVLLTARSLDTLSTKMDSQKNFSVSFLKEE-EAWSLFKKMAGDY---- 302 (679)
Q Consensus 229 ~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~---- 302 (679)
+++.++|+||..+... -..+...+-.+++.-.|+.|+|..-. .....+..+.+|+.. ++.++|...+...
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 6889999999754421 11111222233455578889986322 344567777777754 7889998877421
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHH----HHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChh
Q 005747 303 VEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKD----ALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGE 378 (679)
Q Consensus 303 ~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~----~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 378 (679)
.-...-.....+|.++.+|.|++|...++..+. -...+-.. -...+..- .....-......+.+.+||.-|...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH
Confidence 112223567889999999999999999998887 43333222 22222222 2222222566788999999999988
Q ss_pred HHHHHHHHhccccc-CChh
Q 005747 379 ELKNIFLLIGYTAI-ASID 396 (679)
Q Consensus 379 ~lk~cfl~~s~fp~-~~~~ 396 (679)
-+.-|..++.|.. |..+
T Consensus 241 -e~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 241 -ERALFGRLAVFVGGFDLG 258 (414)
T ss_pred -HHHHhcchhhhhhhhccc
Confidence 5888888888875 5544
No 82
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.50 E-value=3.4e-07 Score=89.26 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=64.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC--cCHHHHHHHH-----HHHhCCCCCccc-hhHH-HH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES--QDIRKIQREI-----ADKLGLKFDEES-ESGR-AR 220 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~i-----~~~l~~~~~~~~-~~~~-~~ 220 (679)
....++|.|++|+|||||++.+++..... +|+.++|+.+.+. +++.++++.+ +.+++.+..... .... ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44679999999999999999999988765 8999999997776 7999999998 333332111000 0001 11
Q ss_pred HHHHHHHcCCceEEEEecCCCc
Q 005747 221 RLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 221 ~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
........|++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223589999999998653
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.3e-06 Score=88.00 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=112.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++...-....... .+....+-..+...+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTSCLEITKGISSD 91 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcHHHHHHccCCcc
Confidence 3456788999999999999987775 468999999999999999999875432111100 000000111111110000
Q ss_pred hC-CCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-cchhcccCCC
Q 005747 206 LG-LKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS-LDTLSTKMDS 277 (679)
Q Consensus 206 l~-~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~~~ 277 (679)
+. .........+.+..+.+.+. .++.-++|+|++... ..+..+...+........+|++|.. ..+.......
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 00 00000001112222333222 356679999999765 3456655444333345555555544 3343333344
Q ss_pred cceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 278 QKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 278 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
...|.+.+++.++..+.+.+.+......- -.+....|++.++|.+--+.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHHHH
Confidence 56899999999999988888765322111 24667889999999875443
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.2e-06 Score=89.79 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=111.4
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccC-------------------CCCCeEEEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAEND-------------------KLFDQVVFS 187 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 187 (679)
....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++...-. ..|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 456788999999999999986654 557899999999999999999865321 012223333
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEee
Q 005747 188 EVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 188 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt 265 (679)
+......++++ +.+++.+ ...-..+++-++|+|++... ..+..+...+......+.+|++|
T Consensus 94 daas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 94 DAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred ecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 33222222221 1222111 11111256679999998654 23445544444434456666555
Q ss_pred cC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh-HHHHHHHH
Q 005747 266 RS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP-VAIVTVAT 331 (679)
Q Consensus 266 R~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP-lai~~~~~ 331 (679)
.+ ..+..........+++.+++.++....+.+.+...... --++....|++.++|.+ .|+..+-.
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44 33332223345789999999999888887765432211 12455677899999966 44444433
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=5.3e-06 Score=88.39 Aligned_cols=183 Identities=13% Similarity=0.145 Sum_probs=114.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhccC-------------------CCCCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVN-TLGIYGIGGIGKTTLAKEVARRAEND-------------------KLFDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 186 (679)
....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++...-. ..+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34567889999999998888876654 79999999999999999998753110 11223455
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 264 (679)
++.+....+.++ +.|++...... ..+++-++|+|++.... ....+...+....+.+++|++
T Consensus 90 idaas~~~vddI-R~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 555544444432 22222221000 02456689999986542 344454444444456677766
Q ss_pred ecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 265 ARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 265 tR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
|.. ..+..........+++.+++.++....+.+.+......-+ ++....|++.++|.+-.+.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 643 3333322334568999999999999999887753322111 3566789999999775443
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=7.1e-06 Score=85.70 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=105.8
Q ss_pred ccccchHHHHHHHHHHhcCCC----------ccEEEEEcCCCCcHHHHHHHHHHHhccCC-------------------C
Q 005747 130 EAFESRMSILNEITDALKNGD----------VNTLGIYGIGGIGKTTLAKEVARRAENDK-------------------L 180 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~ 180 (679)
..++|.+..++.|..++..+. .+.+.++|+.|+|||++|+.+++..--.. |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 467899999999999987553 46788999999999999999987643211 1
Q ss_pred CCeEEEEEcC-CCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCC
Q 005747 181 FDQVVFSEVS-ESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHR 257 (679)
Q Consensus 181 F~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~ 257 (679)
.| +.++... ....++++ +.+.+.+... -..+++-++|+|++.... ....+...+....+
T Consensus 85 pD-~~~i~~~~~~i~i~~i-R~l~~~~~~~----------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDEV-RELVTIAARR----------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEeccccccCCHHHH-HHHHHHHHhC----------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 2222211 11122221 1222222110 012455688889987652 23334333333345
Q ss_pred CcEEEEeecCc-chhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 258 GCKVLLTARSL-DTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 258 gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
+..+|++|.+. .+..........+.+.+++.++..+.+.+..+. . .+.+..+++.++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 56666666653 333333344579999999999999888754321 1 355778899999999755433
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1e-05 Score=83.87 Aligned_cols=195 Identities=17% Similarity=0.099 Sum_probs=113.0
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeE------EEEEcCCCcCHHHH
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQV------VFSEVSESQDIRKI 198 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------~wv~v~~~~~~~~l 198 (679)
|.....++|.++.++.|.+.+..+.. +.+.++|+.|+||+|+|..+++..--....... .-..+...+. .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---V 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---H
Confidence 34556789999999999999987764 468999999999999999998875322111000 0000000010 1
Q ss_pred HHHHHHHhCCCC--------Cc-------cchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCC
Q 005747 199 QREIADKLGLKF--------DE-------ESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHR 257 (679)
Q Consensus 199 ~~~i~~~l~~~~--------~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~ 257 (679)
.+.|.. -..+. ++ .-..+.+..+.+.+. .+++.++|+|++.... ....+...+.....
T Consensus 92 c~~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAA-GAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHc-cCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111110 00000 00 001122333333332 3567799999987553 33344333333334
Q ss_pred CcEEEEeecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 258 GCKVLLTARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 258 gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
++.+|++|.+.. +..........+.+.+++.++..+++.+...... .+....+++.++|.|..+..+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 566777776643 3333344567999999999999999987643211 122267899999999866544
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=4e-06 Score=91.68 Aligned_cols=185 Identities=14% Similarity=0.185 Sum_probs=110.2
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKL-------------------FDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 186 (679)
.....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+.+...-... |..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3456789999999999999987664 57899999999999999999886432111 111222
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc--hhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD--LKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivT 264 (679)
++......+.. .+++++... ..-..+++-++|+|++..... ...+...+......+++|++
T Consensus 93 idaAs~~gVd~-IRelle~a~----------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 93 IDAASNTGIDN-IREVLENAQ----------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred EeccccCCHHH-HHHHHHHHH----------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 32222222211 111211110 000125667999999865432 33333333323345667777
Q ss_pred ecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 265 ARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 265 tR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
|.+.. +.....+....+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+..+
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHHH
Confidence 65432 2222223345788899999999998888775332211 1456788999999987544433
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=1e-05 Score=85.01 Aligned_cols=185 Identities=17% Similarity=0.192 Sum_probs=111.0
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC--------------------CCCeEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK--------------------LFDQVV 185 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~ 185 (679)
.....++|.++.++.+.+++..+.. +.+.++|+.|+||||+|+.+........ +++. .
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3455778999999999999986654 4678999999999999999988753211 2222 2
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEE
Q 005747 186 FSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLL 263 (679)
Q Consensus 186 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 263 (679)
+++........+ .+++.+.+.... ..+++-++|+|++... .....+...+......+.+|+
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 332222112111 122222221100 0144568899998654 234444334433334566677
Q ss_pred eecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 264 TARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 264 TtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
+|.+.. +..........+++.++++++..+.+...+....... -.+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 765533 2221122345788999999999998888765322111 14677888999999886665444
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=3.7e-06 Score=92.33 Aligned_cols=181 Identities=15% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCC-------------------CCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKL-------------------FDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 186 (679)
.....++|.+..++.|...+..++. +.+.++|..|+||||+|+.+++...-... |...+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 3456788999999999999987665 45689999999999999999887543211 111122
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHH----HcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcE
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRL----KKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCK 260 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 260 (679)
++......++ .+..+.+.+ ..+++-++|+|++... .....+...+.......+
T Consensus 93 idaas~~~Vd---------------------diR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 93 IDAASRTKVE---------------------DTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred ecccccCCHH---------------------HHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 2211111111 122222222 1366779999999765 234444434433334555
Q ss_pred EEEeecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 261 VLLTARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 261 iivTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
+|++|.+ ..+..........+.+.+++.++....+.+.+...... .-.+....|++.++|.+--+..+
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6655554 33333323345799999999999999988766422111 11355678999999977644443
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.42 E-value=7.2e-06 Score=77.38 Aligned_cols=159 Identities=20% Similarity=0.196 Sum_probs=94.7
Q ss_pred HHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccC--------------------CCCCeEEEEEcC-CCcCHHHH
Q 005747 141 EITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAEND--------------------KLFDQVVFSEVS-ESQDIRKI 198 (679)
Q Consensus 141 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v~-~~~~~~~l 198 (679)
.+.+.+..++. +.+.++|+.|+||||+|+.+.+..... .+.|. .++... .....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45555655555 678999999999999999998886432 12222 222221 11222222
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCc-chhcccC
Q 005747 199 QREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSL-DTLSTKM 275 (679)
Q Consensus 199 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~ 275 (679)
+++.+.+.... ..+.+-++|+||+.... .++.+...+......+.+|++|++. .+.....
T Consensus 82 -~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 -RELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred -HHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 22222221100 01456789999986542 3444544444444556677777653 2222222
Q ss_pred CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH
Q 005747 276 DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV 324 (679)
Q Consensus 276 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl 324 (679)
.....+++.+++.++..+.+.+. + .. .+.+..|++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCcc
Confidence 23468999999999998888876 2 11 4668899999999885
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.2e-06 Score=89.90 Aligned_cols=181 Identities=12% Similarity=0.167 Sum_probs=111.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC------------------------CC
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK------------------------LF 181 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F 181 (679)
....+++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++...-.. .+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 3456788999999999999987665 5678999999999999999987653211 01
Q ss_pred CeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCC
Q 005747 182 DQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDD 255 (679)
Q Consensus 182 ~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~ 255 (679)
..+++++......++ .+..+.+... .++.-++|+|++... ..+..+...+...
T Consensus 93 ~D~~eldaas~~~Vd---------------------~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 93 VDYTELDAASNRGVD---------------------EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred CceeecCcccccCHH---------------------HHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 112222222211221 1222222221 245568999999765 3345555444444
Q ss_pred CCCcEEEEeecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 256 HRGCKVLLTARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 256 ~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
....++|++|.+ ..+..........+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+..+
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 455666666543 333333334457899999999999998888765322211 1356778889999977544443
No 93
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=4.5e-09 Score=111.09 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=92.1
Q ss_pred CccccCCCCCCEEEcCCCCCCCchhhcCCC-CCcEEEcccccccccchhh-------h---cCcCCCEEeccCCcCcccc
Q 005747 456 PSSLGLLSNLQTLSLYNCKLLDITVIRDLK-KLEVLCLRGSDIKRLPVEV-------G---ELTLLRLLDLRDCRELEII 524 (679)
Q Consensus 456 p~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~L~~n~i~~lp~~i-------~---~l~~L~~L~l~~n~~~~~l 524 (679)
|-.+..+..||+|.|.+|.+.....+..+. .|+.| +.+|.+..+-.-| + ....|.+.+.++|. +..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHhH
Confidence 335666778888888888766532222111 12222 2222222211111 0 11235555556655 4444
Q ss_pred ChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEcCcccccc
Q 005747 525 PPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIGGVWGWEY 603 (679)
Q Consensus 525 p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~~~~~~~~ 603 (679)
... +.-++.|++|+|++|++.+. ..+..|++|++|||++|.+..+|..- .--+|..|.+.+|.+..+.
T Consensus 180 D~S-Lqll~ale~LnLshNk~~~v---------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 180 DES-LQLLPALESLNLSHNKFTKV---------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR- 248 (1096)
T ss_pred HHH-HHHHHHhhhhccchhhhhhh---------HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-
Confidence 444 55566777777777776432 24566677777777777777666543 1122666666555433321
Q ss_pred ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 604 ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 604 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
....+.+|+.||+++|-+....++ .. ...+..|+.|+|.|||+-.
T Consensus 249 ---------------------gie~LksL~~LDlsyNll~~hseL-~p--LwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 249 ---------------------GIENLKSLYGLDLSYNLLSEHSEL-EP--LWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ---------------------hHHhhhhhhccchhHhhhhcchhh-hH--HHHHHHHHHHhhcCCcccc
Confidence 112356667777776653333222 11 2445667777777777643
No 94
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=9.4e-06 Score=83.61 Aligned_cols=198 Identities=17% Similarity=0.137 Sum_probs=114.7
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCC--CCeEEEEEcCCCcCHHHHHHHH
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKL--FDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~l~~~i 202 (679)
|.....++|.++..+.+...+..+.. +.+.|+|+.|+||||+|..+++..-.... +... .....+......+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 44567789999999999999987664 56899999999999999999988643110 1111 001111111122222
Q ss_pred HHH-------hCCCCC-------ccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEE
Q 005747 203 ADK-------LGLKFD-------EESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVL 262 (679)
Q Consensus 203 ~~~-------l~~~~~-------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ii 262 (679)
... +..+.+ ..-..+.+..+.+.+. .+++-++|+|++.... ....+...+.....+..+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 211 000000 0011223334444443 3567799999997653 2333333332222344444
Q ss_pred Eee-cCcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 263 LTA-RSLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 263 vTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
++| +...+..........+.+.+++.++..+++.+...... --.+....+++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444 44334333333456999999999999999987432211 11355678999999999866544
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.2e-05 Score=80.15 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=124.4
Q ss_pred CcccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.+..+.||+.++..+.+|+. ....+-+.|.|-+|.|||.+...++.+......=-+++++++..-....+++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45678899999999999986 44567899999999999999999999876432223567888877678888899988
Q ss_pred HHhCCCCCc-cchhHHHHHHHHHHHcCC-ceEEEEecCCCcc--chhhcCCCCCCC-CCCcEEEEeec---------Ccc
Q 005747 204 DKLGLKFDE-ESESGRARRLHDRLKKEK-RILVILDNIWGNL--DLKAAGIPHGDD-HRGCKVLLTAR---------SLD 269 (679)
Q Consensus 204 ~~l~~~~~~-~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~iivTtR---------~~~ 269 (679)
..+-..... ..+.+....+.....+.+ .+|+|+|.++... .-..+...|.|. -+++|+|+.-- --.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 877222111 122333444555555444 7899999986542 122233333332 35666655332 111
Q ss_pred hhcc-cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 270 TLST-KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 270 v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
.+.. ..-....+...|.+.++-.+++.++.........+....+-++++|.|.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 1111 1223567888999999999999998875444443333444445555443
No 96
>PRK08727 hypothetical protein; Validated
Probab=98.39 E-value=4.3e-06 Score=81.53 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhH
Q 005747 138 ILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESG 217 (679)
Q Consensus 138 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 217 (679)
.+..+...........+.|+|.+|+|||+|++.+++..... ...+.|+.+.+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~--------------- 84 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL--------------- 84 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH---------------
Confidence 34444443333344579999999999999999999886544 23566766432 11111
Q ss_pred HHHHHHHHHHcCCceEEEEecCCCcc---chhhcCCCCCC--CCCCcEEEEeecCcchh--------cccCCCcceEEec
Q 005747 218 RARRLHDRLKKEKRILVILDNIWGNL---DLKAAGIPHGD--DHRGCKVLLTARSLDTL--------STKMDSQKNFSVS 284 (679)
Q Consensus 218 ~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~~~~--~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~ 284 (679)
....+.+. +.-+||+||+.... .|......+.+ ..+|..+|+|++...-- ...+.....++++
T Consensus 85 --~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~ 160 (233)
T PRK08727 85 --RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP 160 (233)
T ss_pred --HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec
Confidence 11222332 34699999986432 23221111111 12456799999852110 1122335689999
Q ss_pred CCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 285 FLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 285 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
++++++-.+++.+++....- .--++...-|++.++|-.-.+
T Consensus 161 ~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 161 VLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 99999999999987753211 111466777888888765544
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.38 E-value=1e-06 Score=89.49 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc--CHHHHHHHHHHHhCCC-CCccchhH-----HHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ--DIRKIQREIADKLGLK-FDEESESG-----RARRL 222 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~i~~~l~~~-~~~~~~~~-----~~~~l 222 (679)
-+-..|+|++|+||||||+.+|+..... +|+.++||.+.+.+ .+.++++.|...+-.. .+..+... .+-..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999998765 89999999999887 7788888886322111 11111111 11112
Q ss_pred HHHH-HcCCceEEEEecCCC
Q 005747 223 HDRL-KKEKRILVILDNIWG 241 (679)
Q Consensus 223 ~~~l-~~~k~~LlVlDdv~~ 241 (679)
-+++ ..|++++|++|++..
T Consensus 248 Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHcCCCEEEEEEChHH
Confidence 2222 358999999999854
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.3e-06 Score=88.73 Aligned_cols=197 Identities=15% Similarity=0.148 Sum_probs=108.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
....+++|++..++.+.+++..+. .+.+.++|+.|+||||+|+.+++...-.+..+. ..+..-...+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-------~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-------DCCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHHcC
Confidence 345678899999999999987654 457889999999999999999987642211100 000111111111110
Q ss_pred hCCCC---C--ccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-cchhcc
Q 005747 206 LGLKF---D--EESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS-LDTLST 273 (679)
Q Consensus 206 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~ 273 (679)
..... + .....+.+..+.+... .+++-++|+|++... ..+..+...+......+.+|++|.. ..+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 00000 0 0001111222222111 133457999998654 3344444433333345555555543 333222
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHH
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTVAT 331 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~~~ 331 (679)
.......+++.+++.++....+...+......-. .+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2333568999999999999888887643221111 3567788999999664 4444443
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.38 E-value=6.7e-06 Score=80.31 Aligned_cols=166 Identities=15% Similarity=0.109 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccch
Q 005747 136 MSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESE 215 (679)
Q Consensus 136 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~ 215 (679)
...+..+.++......+.+.|+|+.|+|||+|++.+++..... ...+.|+.+.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3455556565555556789999999999999999999876543 34566776643110
Q ss_pred hHHHHHHHHHHHcCCceEEEEecCCCc---cchhhcC-CCCCC-CCCC-cEEEEeecCcchh--------cccCCCcceE
Q 005747 216 SGRARRLHDRLKKEKRILVILDNIWGN---LDLKAAG-IPHGD-DHRG-CKVLLTARSLDTL--------STKMDSQKNF 281 (679)
Q Consensus 216 ~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~l~-~~~~~-~~~g-s~iivTtR~~~v~--------~~~~~~~~~~ 281 (679)
....+.+.+. +--++++||+... ..|+... ..+.. ...| .++|+||+...-. ...+....++
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 0011222222 1248899999653 2343211 11111 1123 4789998853211 1223445799
Q ss_pred EecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 282 SVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 282 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
++.++++++-.+++.+.+....- .--+++..-|++.+.|..-++..+
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999999999886653211 112467777888888765554433
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=6.8e-06 Score=88.96 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=112.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC-------------------CCCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK-------------------LFDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 186 (679)
....+++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...-.. .|..++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 3456789999999999999987665 4578999999999999999998753221 1222344
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEe
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 264 (679)
++.+....++++ +++++.+... -..++.-++|+|++... .....+...+......+++|++
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 444333333332 2233322111 01256678999999764 2344444444333456667766
Q ss_pred ecCc-chhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 265 ARSL-DTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 265 tR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
|.+. .+..........+++.+++.++....+.+.+......-+ .+....|++.++|.+.-+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHH
Confidence 6543 332222233467899999999988777766543221111 34567788999998754443
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.38 E-value=4.7e-06 Score=87.39 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=102.5
Q ss_pred CCcccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
.....+.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch--
Confidence 345567899999999988764 1 124568999999999999999999976532 2 22221
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc----------------chhhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL----------------DLKAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~ 255 (679)
..+.... ++ ........+.+......+.+|++|+++... .+..+...+. ..
T Consensus 190 --~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111110 11 011222333333344567899999986431 1111111111 11
Q ss_pred CCCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
..+.+||.||.....+... ......+.+...+.++..++|...+......++. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 2456788888754333211 1234578999999999999999887643322211 1356677777764
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.37 E-value=5.7e-06 Score=92.80 Aligned_cols=172 Identities=22% Similarity=0.295 Sum_probs=99.5
Q ss_pred CCcccccchHHHHH---HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 127 KDYEAFESRMSILN---EITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 127 ~~~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
....+++|++..+. .+...+..+....+.++|++|+||||+|+.+++.... .|. .++... ....++ +++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~~- 96 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RAE- 96 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HHH-
Confidence 44567889888774 5667777777778899999999999999999987643 231 111110 011111 111
Q ss_pred HHhCCCCCccchhHHHHHHHHHHH-cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCcc----hhcccCC
Q 005747 204 DKLGLKFDEESESGRARRLHDRLK-KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSLD----TLSTKMD 276 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~----v~~~~~~ 276 (679)
.....+.+. .+++.+||+||++.. .+.+.+...+ ..|+.++++++.+. +......
T Consensus 97 ---------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 97 ---------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ---------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111111 245689999999654 3344443222 23555555433222 1111112
Q ss_pred CcceEEecCCChHHHHHHHHHHhCC------CCCCccHHHHHHHHHHHcCCChH
Q 005747 277 SQKNFSVSFLKEEEAWSLFKKMAGD------YVEGNELKEVARDVAKECAGLPV 324 (679)
Q Consensus 277 ~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~I~~~~~glPl 324 (679)
....+.+.+++.++...++.+.+.. .....--++....|++.+.|..-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2457999999999999999886641 11111124566788888888643
No 103
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.36 E-value=1.2e-06 Score=82.62 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 131 AFESRMSILNEITDALK---NGDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999993 5567899999999999999999999988766
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2e-05 Score=82.94 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=105.9
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccC------CCCCe-EEEEEcCCCcCHHHHH
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAEND------KLFDQ-VVFSEVSESQDIRKIQ 199 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~-~~wv~v~~~~~~~~l~ 199 (679)
...+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+.+..... ..|.. ++.++.....+..++
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i- 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI- 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-
Confidence 456778999999999999987654 488899999999999999998875431 11222 121221111122222
Q ss_pred HHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecC-cchhcccCC
Q 005747 200 REIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARS-LDTLSTKMD 276 (679)
Q Consensus 200 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~~ 276 (679)
+.+++.+.... . .+++-++++|++.... .+..+...+......+.+|++|.. ..+......
T Consensus 94 ~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22222221100 0 1345689999986542 244443323222334556655533 333222223
Q ss_pred CcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 277 SQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 277 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
....++..++++++....+...+......- -.+....+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHHHH
Confidence 345789999999999988888765322111 1467788888999865533
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=8.7e-06 Score=86.14 Aligned_cols=200 Identities=15% Similarity=0.176 Sum_probs=110.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE-cCCCcCHHHHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITDALKNGDVN-TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE-VSESQDIRKIQREIADK 205 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~l~~~i~~~ 205 (679)
....++|.+..++.|..++.++.++ .+.++|+.|+||||+|+.+++...-...+....|.. +..++..-..-+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 4567889999999999999876654 588999999999999999998764321111111110 00000000011111100
Q ss_pred hCCCC-----CccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeec-Ccchhcc
Q 005747 206 LGLKF-----DEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTAR-SLDTLST 273 (679)
Q Consensus 206 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR-~~~v~~~ 273 (679)
-.... ......+.+..+.+.+. .+++-++|+|++.... .+..+...+....+.+.+|++|. ...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 00000 00011122222333331 2455689999987543 45555444444445666666553 3333321
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
.......+++.++++++..+.+...+..... .--.+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1222457899999999998888877642211 11146788899999997754433
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.2e-05 Score=87.52 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=112.3
Q ss_pred CcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC-------------------eEEEE
Q 005747 128 DYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFD-------------------QVVFS 187 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~wv 187 (679)
....++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.+++...-....+ .++++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 44577899999999999888765 46788999999999999999998764211000 02233
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEee
Q 005747 188 EVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 188 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt 265 (679)
+......+.++ +.+.+.+. ..-..+++-++|+|++... .....+...+........+|++|
T Consensus 94 d~a~~~~Id~i-R~L~~~~~----------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 94 DGASNRGIDDA-KRLKEAIG----------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred ecccccCHHHH-HHHHHHHH----------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 22212122211 11111111 0001256679999998665 23444444433333455566655
Q ss_pred cC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHHHHHHh
Q 005747 266 RS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVTVATAL 333 (679)
Q Consensus 266 R~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~~~~~L 333 (679)
.. ..+..........+++.+++.++....+...+...... --.+....|++.++|. -.|+..+..++
T Consensus 157 t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 157 TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 54 33332222334588999999999998888866532211 1146678889999995 46777766554
No 107
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=1.2e-05 Score=77.72 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=85.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
..+.+.|||++|+|||+|++.++..... .|++.. .+...+. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhh--
Confidence 3467999999999999999999876432 243332 1111111 1111
Q ss_pred CceEEEEecCCCccc-hhhcCCCCCC-CCCCcEEEEeecCcch--------hcccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 230 KRILVILDNIWGNLD-LKAAGIPHGD-DHRGCKVLLTARSLDT--------LSTKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 230 k~~LlVlDdv~~~~~-~~~l~~~~~~-~~~gs~iivTtR~~~v--------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
.-+|++||+..... -+.+...+.. ...|..+|+|++.... +...+....+++++++++++-.+++.+.+
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 13788899954311 1111111111 1346679998874211 11234556799999999999999999888
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 300 GDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 300 ~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
....- .--+++..-|++.+.|..-++..
T Consensus 167 ~~~~~-~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQL-YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCC-CCCHHHHHHHHHHhhhhHHHHHH
Confidence 64211 11146777788888887766554
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.5e-05 Score=86.85 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=109.6
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC-------------------CCCeEEEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK-------------------LFDQVVFS 187 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 187 (679)
....++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++...-.. .|...+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 456788999999999999987665 4568999999999999999988753211 11122333
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEee
Q 005747 188 EVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 188 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 265 (679)
+.+....+.++ +++++.+... -..+++-++|+|++.... ....+...+......+.+|++|
T Consensus 94 ~~~~~~~vd~i-r~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 94 DAASNTQVDAM-RELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eccccCCHHHH-HHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 32222222221 2222221110 012566799999997653 2444444443333456666666
Q ss_pred cCc-chhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 005747 266 RSL-DTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTV 329 (679)
Q Consensus 266 R~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~ 329 (679)
.+. .+..........+++.+++.++..+.+.+.+....... -.+....|++.++|.+- |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 543 22211122346889999999999988877664222111 23556788999999775 44433
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.7e-05 Score=86.26 Aligned_cols=181 Identities=13% Similarity=0.158 Sum_probs=111.8
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc---------------------CCCCCeEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAEN---------------------DKLFDQVV 185 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~ 185 (679)
....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+.....- ..+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 346788999999999999987665 45889999999999999998887531 123432 2
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEE
Q 005747 186 FSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLL 263 (679)
Q Consensus 186 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiv 263 (679)
.++.+....+.++. .+++++.... ..+++-++|+|++.... .+..+...+.....++.+|+
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 33333333333322 2222221110 01445688999986653 34455444443344566655
Q ss_pred ee-cCcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 264 TA-RSLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 264 Tt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
+| +...+..........+++.++++++....+.+.+....... -.+.+..|++.++|..--+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 55 44444433334467899999999999988887765332211 13567889999999665433
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.2e-08 Score=92.31 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=104.0
Q ss_pred CceEEEEeecccCC--CCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccc-cccc--cchhhhcCcCCCE
Q 005747 440 EQVRVINVSYMNLL--SLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGS-DIKR--LPVEVGELTLLRL 512 (679)
Q Consensus 440 ~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n-~i~~--lp~~i~~l~~L~~ 512 (679)
..|+.||||+..++ .+..-++.|.+|+.|.|.++.+.++ ..+.+-.+|+.|||+.+ .+++ +.--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46889999988877 3444577889999999999999883 56788889999999986 5663 3334578899999
Q ss_pred EeccCCcCccccChhhhcCC-cccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEee-cCCC-CCCcc-ccccc
Q 005747 513 LDLRDCRELEIIPPNVLSKL-SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ-DVNT-LPRGL-FLEKL 588 (679)
Q Consensus 513 L~l~~n~~~~~lp~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~-lp~~~-~l~~L 588 (679)
|+|+.|......-..++... ++|..|+++++.-.-. ...+..-...+++|.+|||+.| .++. .-..+ .++.|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~----~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ----KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh----hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 99999876554433323333 5788888888532111 0111222356788999999854 4442 22222 67788
Q ss_pred ceeEEEEcC
Q 005747 589 ERYKILIGG 597 (679)
Q Consensus 589 ~~L~l~~~~ 597 (679)
++|.++.|-
T Consensus 341 ~~lSlsRCY 349 (419)
T KOG2120|consen 341 QHLSLSRCY 349 (419)
T ss_pred eeeehhhhc
Confidence 888776554
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.6e-05 Score=85.74 Aligned_cols=199 Identities=12% Similarity=0.167 Sum_probs=112.8
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCC--eEEEEEcCCCcCHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFD--QVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++...-..... ...+-.+ ..-.--+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHHHh
Confidence 3456789999999999999987664 4789999999999999999998754221110 0000000 0000001111
Q ss_pred HHhCCCC-----CccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeec-Ccchh
Q 005747 204 DKLGLKF-----DEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTAR-SLDTL 271 (679)
Q Consensus 204 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR-~~~v~ 271 (679)
..-.... ......+.+..+.+.+. .+++-++|+|++.... ....+...+.....++.+|++|. ...+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1000000 00011122223333222 2455689999986553 34444444444445666666553 33333
Q ss_pred cccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 272 STKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 272 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
.........+++.+++.++....+.+.+......- -.+....|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22223456899999999999999888765322111 13667888999999886555443
No 112
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.25 E-value=1.3e-05 Score=78.84 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=88.6
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHH
Q 005747 142 ITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARR 221 (679)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 221 (679)
|..+++++...-+.+||++|+||||||+.+....+... ..||..|-...-..-.+.|+++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq-------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ-------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------
Confidence 44455578888899999999999999999999877543 557777765443333444443321
Q ss_pred HHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEE--eecCcchh--cccCCCcceEEecCCChHHHHHHH
Q 005747 222 LHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLL--TARSLDTL--STKMDSQKNFSVSFLKEEEAWSLF 295 (679)
Q Consensus 222 l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf 295 (679)
.+....++|.+|.+|.|..- .+-+ ..+|.-.+|.-++| ||.+.+.- ........++-+++|+.++...++
T Consensus 215 -~~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 215 -NEKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred -HHHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 11122368899999998542 2222 23444567777776 55543221 112345679999999999999988
Q ss_pred HHH
Q 005747 296 KKM 298 (679)
Q Consensus 296 ~~~ 298 (679)
.+.
T Consensus 291 ~ra 293 (554)
T KOG2028|consen 291 MRA 293 (554)
T ss_pred HHH
Confidence 773
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=4.4e-05 Score=82.27 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=110.8
Q ss_pred CcccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhccCCC------------------C-CeEEEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDVN-TLGIYGIGGIGKTTLAKEVARRAENDKL------------------F-DQVVFS 187 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F-~~~~wv 187 (679)
....++|.+...+.+..++..++.. +..++|+.|+||||+|+.+++..-.... + ..++.+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 4567889999999999999877655 6689999999999999999887532110 1 112222
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEee
Q 005747 188 EVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 188 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 265 (679)
+.+....+.++.. +++..... -..+++-++|+|++.... ....+...+......+++|++|
T Consensus 92 daas~~gId~IRe-lie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 92 DAASNRGIDDIRE-LIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred ccccccCHHHHHH-HHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 2222222222221 11111100 001455689999986552 3444443333334456777777
Q ss_pred cCc-chhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 266 RSL-DTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 266 R~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
.+. .+..........+++.+++.++....+.+.+......- -.+....|++.++|.+--+..+.
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHH
Confidence 653 22222223356899999999999988887665322211 24677889999999885544443
No 114
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=2.1e-05 Score=82.87 Aligned_cols=175 Identities=19% Similarity=0.281 Sum_probs=101.2
Q ss_pred CCcccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
.....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh--
Confidence 344567899999999888763 1 235678999999999999999999976532 222211
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~ 255 (679)
.++.... .+ ........+.+......+.+|++|+++... . +..+...+. ..
T Consensus 199 --~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111110 11 111223334444444567899999986421 0 111111111 11
Q ss_pred CCCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
..+.+||.||...+.+.... .....+++.+.+.++..++|+..........+ .....+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence 23556777777644332211 23457999999999999999988764322221 11345666776653
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=7e-06 Score=83.94 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=64.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC--cCHHHHHHHHHHHhCCCCCccchhH---HHH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES--QDIRKIQREIADKLGLKFDEESESG---RAR---- 220 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~---~~~---- 220 (679)
.-+.++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-...-..+... .+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34679999999999999999999987664 7999999999866 7899999998443321111111111 111
Q ss_pred HHHHHHHcCCceEEEEecCCCc
Q 005747 221 RLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 221 ~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.......+|++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 1222224689999999998643
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4.2e-05 Score=87.06 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=109.1
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCC---------------------CeEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLF---------------------DQVV 185 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~~ 185 (679)
....++|.+..++.|..++..+++ +.+.++|+.|+||||+|+.+.+...-.+.. -.++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 456788999999999999987665 467899999999999999999886421111 0122
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEE
Q 005747 186 FSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLL 263 (679)
Q Consensus 186 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 263 (679)
+++-.....+.++ +++.+.+ ...-..+++-++|||++... .....|...+..-...+.+|+
T Consensus 93 eidaas~~~Vd~i-R~l~~~~----------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 93 EIDAASHGGVDDA-RELRERA----------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred EecccccCCHHHH-HHHHHHH----------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 2222221122221 1111111 00111245568899998765 334445444444445566665
Q ss_pred eecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 264 TARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 264 TtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
+|.+ ..+..........|++..++.++..+.+.+.+....... -.+....|++.++|.+..+.
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 5543 334333334467899999999999888887654222111 13456778999999774433
No 117
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=8.7e-08 Score=80.82 Aligned_cols=104 Identities=20% Similarity=0.261 Sum_probs=61.9
Q ss_pred ceEEEEeecccCCCCCcc---ccCCCCCCEEEcCCCCCCC-chhhc-CCCCCcEEEcccccccccchhhhcCcCCCEEec
Q 005747 441 QVRVINVSYMNLLSLPSS---LGLLSNLQTLSLYNCKLLD-ITVIR-DLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDL 515 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~---~~~l~~L~~L~L~~n~l~~-~~~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l 515 (679)
.+..++|++|.+-.++.. +....+|...+|++|.+.+ ++.|. +++.++.|+|++|.|+++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 455667777766655443 3444556666677776666 33333 344666666666666666666666666666666
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCC
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~ 546 (679)
+.|. +...|.- +..|.+|-.|+..+|.+.
T Consensus 108 ~~N~-l~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNP-LNAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCc-cccchHH-HHHHHhHHHhcCCCCccc
Confidence 6665 3444443 444666666666666553
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.2e-05 Score=83.55 Aligned_cols=196 Identities=16% Similarity=0.196 Sum_probs=107.2
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE-cCCCcCHHHHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE-VSESQDIRKIQREIADK 205 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~l~~~i~~~ 205 (679)
...+++|.+..++.|..++..+.+ +.+.++|+.|+||||+|+.+++...-...++...|.. +...+..-...+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 456788999999999998887665 4588999999999999999998764322111000110 00000000011111000
Q ss_pred hCCCC---C--ccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEee-cCcchhcc
Q 005747 206 LGLKF---D--EESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTA-RSLDTLST 273 (679)
Q Consensus 206 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~ 273 (679)
-.... + .....+.+..+.+.+. .+++-++|+|++.... ..+.+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000 0 0011122222333321 2456689999986653 3444444443333455555555 33444333
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV 324 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl 324 (679)
.......+++.+++.++....+.+.+......- -.+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHH
Confidence 334467899999999998888877654221111 14667889999999554
No 119
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.8e-06 Score=59.14 Aligned_cols=38 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCCEEEcCCCCCCCchh-hcCCCCCcEEEcccccccccc
Q 005747 464 NLQTLSLYNCKLLDITV-IRDLKKLEVLCLRGSDIKRLP 501 (679)
Q Consensus 464 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~i~~lp 501 (679)
+|++|++++|.+++++. +++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 45555555555555333 555666666666666555444
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=6.8e-05 Score=83.30 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=111.2
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++.......+. ....++.-...+.|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 346788999999999998886654 5678999999999999999998764211100 000111111222222111
Q ss_pred CCCC---C--ccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCc-chhccc
Q 005747 207 GLKF---D--EESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSL-DTLSTK 274 (679)
Q Consensus 207 ~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~ 274 (679)
+... + .....+.+..+.+.+. .+++-++|+|++... ...+.+...+......+.+|++|.+. .+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1100 0 0011112222222221 145679999998654 33444443343333456666666542 232222
Q ss_pred CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 275 MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 275 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
......+++.+++.++....+...+......- -.+....|++.++|.+..+...-
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23346788999999999888888765322111 13667889999999886554443
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=4.1e-05 Score=74.72 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=90.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
...+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C
Confidence 3678999999999999999999876433 23467776543 1111 0123333332 1
Q ss_pred ceEEEEecCCCc---cchhh-cCCCCCC-CCCCcEEEEeecCcchh--------cccCCCcceEEecCCChHHHHHHHHH
Q 005747 231 RILVILDNIWGN---LDLKA-AGIPHGD-DHRGCKVLLTARSLDTL--------STKMDSQKNFSVSFLKEEEAWSLFKK 297 (679)
Q Consensus 231 ~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 297 (679)
=++|+||+... ..|.. +...+.. ...|.++|+|++..... ........+++++++++++..+++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 26889999633 34433 2222211 12466788888753221 01122346889999999999999986
Q ss_pred HhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 298 MAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 298 ~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
++....- .--+++..-|++.+.|..-.+..+
T Consensus 178 ka~~~~~-~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 178 RASRRGL-HLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 6643211 111467777888887765544433
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=7.5e-05 Score=81.73 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=111.0
Q ss_pred CCcccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhccCCCC---------------------CeE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVN-TLGIYGIGGIGKTTLAKEVARRAENDKLF---------------------DQV 184 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~ 184 (679)
.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++...-.+.. ..+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 34567889999999999999876654 57899999999999999999875421101 012
Q ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCC
Q 005747 185 VFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRG 258 (679)
Q Consensus 185 ~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 258 (679)
+.++.+....+.+ +..+.+... .+++-++|+|++... .....+...+......
T Consensus 90 ieidaas~~gvd~---------------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 90 VELDAASHGGVDD---------------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred EEeccccccCHHH---------------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 2222222112221 122222211 245668999998654 3344444444433445
Q ss_pred cEEEEeec-CcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHHHh
Q 005747 259 CKVLLTAR-SLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTVATAL 333 (679)
Q Consensus 259 s~iivTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~~~~L 333 (679)
..+|++|. ...+..........+++.+++.++..+.+.+.+......- -.+....|++.++|.+- |+..+-.++
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555554 3444332233457899999999999888877665322111 13566778889999764 444444433
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=6.7e-05 Score=80.32 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=106.9
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC---------------------CCCeEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK---------------------LFDQVV 185 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~ 185 (679)
....++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+++...... +++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 456788999999999999987665 5688999999999999999988753211 111 11
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEE
Q 005747 186 FSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLL 263 (679)
Q Consensus 186 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiv 263 (679)
++.........++ +.+.+.+. ..-..+++-++|+|++.... ....+...+.....+..+|+
T Consensus 94 ~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 94 EIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 2211111111111 11211111 00012456789999986442 23334333333334556666
Q ss_pred eecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 005747 264 TARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTV 329 (679)
Q Consensus 264 TtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~ 329 (679)
+|.+ ..+..........+++.++++++....+...+......- -.+.+..|++.++|.+- |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6643 333222223356899999999999888887664321111 14567889999999654 44433
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.14 E-value=2.1e-05 Score=81.13 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=86.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|.++..+.+..++..+.. .++.++|++|+||||+|+.+++.... ...+++.+. .....+...+. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i~~~l~-~ 90 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFVRNRLT-R 90 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHHHHHHH-H
Confidence 4456788999999999999986654 56667999999999999999987532 134455544 22222111111 1
Q ss_pred hCCCCCccchhHHHHHHHHHH-HcCCceEEEEecCCCc---cchhhcCCCCCCCCCCcEEEEeecCcchh-cccCCCcce
Q 005747 206 LGLKFDEESESGRARRLHDRL-KKEKRILVILDNIWGN---LDLKAAGIPHGDDHRGCKVLLTARSLDTL-STKMDSQKN 280 (679)
Q Consensus 206 l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~ 280 (679)
+ .... ..+.+-++|+|++... .....+...+.....++++|+||.....+ .........
T Consensus 91 ~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 F----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred H----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1 0000 0134568999998654 11122222222234567888888754322 111122346
Q ss_pred EEecCCChHHHHHHHHH
Q 005747 281 FSVSFLKEEEAWSLFKK 297 (679)
Q Consensus 281 ~~l~~L~~~e~~~Lf~~ 297 (679)
+.+...+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77778888887766543
No 125
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=3.7e-06 Score=76.15 Aligned_cols=123 Identities=21% Similarity=0.286 Sum_probs=74.4
Q ss_pred EEEEeecccCCCCCcccc-CCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhh-cCcCCCEEeccCCcC
Q 005747 443 RVINVSYMNLLSLPSSLG-LLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVG-ELTLLRLLDLRDCRE 520 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~l~~n~~ 520 (679)
+.+++.+..+..+.. ++ -+.+...+||++|.+..++.|..++.|.+|.|++|+|+.+.+.+. .+++|..|.|.+|++
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 455566555543322 11 233566777777777777777777788888888888877765554 456677777777763
Q ss_pred c--cccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEE
Q 005747 521 L--EIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQ 572 (679)
Q Consensus 521 ~--~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 572 (679)
. +.+.+ +..++.|++|.+-+|....... --.--+..+++|+.||..
T Consensus 101 ~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~----YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 101 QELGDLDP--LASCPKLEYLTLLGNPVEHKKN----YRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhhhhcch--hccCCccceeeecCCchhcccC----ceeEEEEecCcceEeehh
Confidence 2 23333 5567777777777776633211 111234566677777654
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=9.2e-05 Score=82.06 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCC-CC---------------eEEEEEc
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKL-FD---------------QVVFSEV 189 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---------------~~~wv~v 189 (679)
.....++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.++...--... .. .++++..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 345678899999999999998665 456789999999999999999886432111 00 0111111
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEE
Q 005747 190 SESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLL 263 (679)
Q Consensus 190 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 263 (679)
..... .+.+..+.+.+. .+++-++|+|++... ..+..+...+........+|+
T Consensus 95 asn~~---------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 95 ASNNG---------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred cccCC---------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 11111 111223333322 255669999998654 234444444433334455554
Q ss_pred ee-cCcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 005747 264 TA-RSLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTV 329 (679)
Q Consensus 264 Tt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~ 329 (679)
+| +...+..........+++.+++.++....+...+....... -.+.+..|++.++|.+- |+..+
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 44444332233456899999999999988887654222111 13557789999988664 44433
No 127
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=0.00011 Score=72.24 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----CeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 136 MSILNEITDALK---NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLF----DQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 136 ~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
.+.++++.+++. ....+-+.|||.+|.|||++++.+.+.......- -.++.|......+...++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344556666665 3345679999999999999999999875432111 147888999999999999999999999
Q ss_pred CCCccchhHH-HHHHHHHHHcCCceEEEEecCCCcc---------chhhcCCCCCCCCCCcEEEEeecCcchhc----cc
Q 005747 209 KFDEESESGR-ARRLHDRLKKEKRILVILDNIWGNL---------DLKAAGIPHGDDHRGCKVLLTARSLDTLS----TK 274 (679)
Q Consensus 209 ~~~~~~~~~~-~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~~----~~ 274 (679)
+....+.... .......+..-+--+||+|++.+.- .+..+ ..+.+.-.=+-|.+-|+.---+- ..
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8754433333 3333444444445699999986531 11111 11112222334666666422210 00
Q ss_pred CCCcceEEecCCC-hHHHHHHHHHHhC----CCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 275 MDSQKNFSVSFLK-EEEAWSLFKKMAG----DYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 275 ~~~~~~~~l~~L~-~~e~~~Lf~~~~~----~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
......+.+.... +++...|+..... .....-...++++.|...++|+.=-+
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 0112355555544 3455555544322 11122234689999999999986433
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00011 Score=81.38 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=110.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...-...... ....+..-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcC
Confidence 3456778999999999999886653 67889999999999999999998643211100 00011111122222111
Q ss_pred hCCCC-----CccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-cchhcc
Q 005747 206 LGLKF-----DEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS-LDTLST 273 (679)
Q Consensus 206 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~ 273 (679)
..... ......+.+..+.+... .+++-++|+|++... ..+..+...+........+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 00011122223332221 245568999998754 3345554444333344555555543 333322
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
.......+++..++.++....+...+......- -.+....|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 233456788899999998888877664322111 1355778999999977655443
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=4.5e-06 Score=57.19 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=20.7
Q ss_pred CCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 486 KLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 486 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
+|++|++++|+|+.+|..+++|++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5666666666666666556666666666666665
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00013 Score=78.61 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=106.7
Q ss_pred CcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccC--C-----------------CCCeEEEE
Q 005747 128 DYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAEND--K-----------------LFDQVVFS 187 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-----------------~F~~~~wv 187 (679)
....++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.++....-. . .|...+++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 445778999999999999987654 456789999999999999998875310 0 01112223
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEE
Q 005747 188 EVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKV 261 (679)
Q Consensus 188 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i 261 (679)
+.+......+ ...+.+... .+++-++|+|++... .....+...+....+...+
T Consensus 94 daas~~gvd~---------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 94 DAASNRGIDD---------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred eCccCCCHHH---------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2222211111 112222221 255679999998654 2334443333333345555
Q ss_pred EEeecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 262 LLTARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 262 ivTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
|++|.+ ..+..........+++.+++.++....+...+....... -.+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 555543 233221122345889999999999888888665322111 13566778889999765444443
No 131
>PF14516 AAA_35: AAA-like domain
Probab=98.09 E-value=0.00036 Score=71.86 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=119.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-----cCHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-----QDIRKIQRE 201 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~l~~~ 201 (679)
.+.+-++.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+..... -..++++++..- .+.++.++.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHHHHHHH
Confidence 34556678887777778777653 3689999999999999999999887654 234567776642 245555555
Q ss_pred HH----HHhCCCCCcc--------chhHHHHHHHHHHH--cCCceEEEEecCCCccc--------hhhcCCCCCC---C-
Q 005747 202 IA----DKLGLKFDEE--------SESGRARRLHDRLK--KEKRILVILDNIWGNLD--------LKAAGIPHGD---D- 255 (679)
Q Consensus 202 i~----~~l~~~~~~~--------~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~--------~~~l~~~~~~---~- 255 (679)
++ ++++....-. +.......+.+.+. .+++.+|++|+++.... +..+...... .
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 54 5554432110 11111222333332 26899999999865421 1111111100 0
Q ss_pred CCC-cEEEEeecCcc-hh----cccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 256 HRG-CKVLLTARSLD-TL----STKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 256 ~~g-s~iivTtR~~~-v~----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
.-. -++++....+. .. .........++|++++.+|...|....-.... ....++|...+||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHH
Confidence 011 12222211111 11 11122345889999999999999887632211 233889999999999999999
Q ss_pred HHHhhc
Q 005747 330 ATALRD 335 (679)
Q Consensus 330 ~~~L~~ 335 (679)
+..+..
T Consensus 240 ~~~l~~ 245 (331)
T PF14516_consen 240 CYLLVE 245 (331)
T ss_pred HHHHHH
Confidence 999976
No 132
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=4.5e-07 Score=76.63 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=78.9
Q ss_pred CceEEEEeecccCCCCCcccc-CCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLG-LLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~ 517 (679)
..|+..++++|.+..+|+.|. .++.++.|+|++|.+++ |..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 368899999999999998875 45689999999999999 6779999999999999999999999999999999999999
Q ss_pred CcCccccChhhh
Q 005747 518 CRELEIIPPNVL 529 (679)
Q Consensus 518 n~~~~~lp~~~~ 529 (679)
|. ...+|.+.|
T Consensus 133 na-~~eid~dl~ 143 (177)
T KOG4579|consen 133 NA-RAEIDVDLF 143 (177)
T ss_pred Cc-cccCcHHHh
Confidence 77 677787643
No 133
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.3e-07 Score=88.49 Aligned_cols=177 Identities=19% Similarity=0.132 Sum_probs=111.8
Q ss_pred CCCEEEcCCCCCCC---chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEeccCCcCccccChh-hhcCCccccee
Q 005747 464 NLQTLSLYNCKLLD---ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCRELEIIPPN-VLSKLSHLEEL 538 (679)
Q Consensus 464 ~L~~L~L~~n~l~~---~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l~~n~~~~~lp~~-~~~~l~~L~~L 538 (679)
.|++|||+...++. ...+..+.+|+.|.|.++++. .+...+.+-.+|+.|+|+.|+-.+..... ++.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888998888775 245677888888889888887 56667888888999999887654443322 36778888888
Q ss_pred ecCCCCCCcchhhhccccccccccc-CCCcEEEEEeecC----CCCCCcc-cccccceeEEEEcCccccccccccccEEE
Q 005747 539 YMGPRSFDKWEVEVEGVKNASLHEL-KHLISLELQIQDV----NTLPRGL-FLEKLERYKILIGGVWGWEYADIWCREFK 612 (679)
Q Consensus 539 ~l~~n~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~l----~~lp~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 612 (679)
+++.|.+..-. .-..+... ++|..|+|++..= +.+.... .+++|..|+++.+....-
T Consensus 266 NlsWc~l~~~~------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~----------- 328 (419)
T KOG2120|consen 266 NLSWCFLFTEK------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN----------- 328 (419)
T ss_pred CchHhhccchh------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-----------
Confidence 88887653211 11111111 4567777775421 1222222 567777777765542210
Q ss_pred EecCccccchHHHHHHhcccceeeccccccccccccccc-cCcCCCCCccEEEEecCc
Q 005747 613 IDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNE-LDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 613 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~-l~~~~~~~L~~L~l~~n~ 669 (679)
.....+..|+.|++|.++.|. .+. |.. +.+...|+|.+|++-+|-
T Consensus 329 --------~~~~~~~kf~~L~~lSlsRCY--~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 --------DCFQEFFKFNYLQHLSLSRCY--DII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred --------hHHHHHHhcchheeeehhhhc--CCC--hHHeeeeccCcceEEEEecccc
Confidence 011234457889999999988 432 211 134677999999988763
No 134
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.08 E-value=7.4e-05 Score=80.09 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=93.0
Q ss_pred CCcccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCC---CCCeEEEEEcC
Q 005747 127 KDYEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDK---LFDQVVFSEVS 190 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~v~ 190 (679)
.....+.|.+..++++.+.+. -...+-+.++|++|.|||++|+.+++...... .+....|+.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 345667789999888887753 11345689999999999999999999865321 12234555544
Q ss_pred CCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHH----HcCCceEEEEecCCCcc---------c-----hhhcCCCC
Q 005747 191 ESQDIRKIQREIADKLGLKFDEESESGRARRLHDRL----KKEKRILVILDNIWGNL---------D-----LKAAGIPH 252 (679)
Q Consensus 191 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~---------~-----~~~l~~~~ 252 (679)
... +... .... ....+..+.+.. ..+++.+|++|+++... + +..+...+
T Consensus 259 ~~e----Ll~k--------yvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GPE----LLNK--------YVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred chh----hccc--------ccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 321 1000 0000 011222222222 23578999999986421 1 11222111
Q ss_pred CC--CCCCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCC
Q 005747 253 GD--DHRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGD 301 (679)
Q Consensus 253 ~~--~~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 301 (679)
.. ...+..||.||...+.+...+ .-...+++...+.++..++|..+...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 123445566665544432222 23457999999999999999988753
No 135
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=2.1e-05 Score=75.80 Aligned_cols=160 Identities=23% Similarity=0.242 Sum_probs=91.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
...+.|+|..|+|||.|.+++++.......-..++|++ ..++...+...+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 35689999999999999999999876432223466764 34455555544422 12234445554 3
Q ss_pred ceEEEEecCCCcc---chhh-cCCCCCC-CCCCcEEEEeecCcch-h-------cccCCCcceEEecCCChHHHHHHHHH
Q 005747 231 RILVILDNIWGNL---DLKA-AGIPHGD-DHRGCKVLLTARSLDT-L-------STKMDSQKNFSVSFLKEEEAWSLFKK 297 (679)
Q Consensus 231 ~~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTtR~~~v-~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 297 (679)
-=+|++||++... .|.. +...+.. ...|.++|+|++.... + ...+....++++.++++++..+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 4699999996542 2222 1111111 1346689999975321 1 11234456899999999999999998
Q ss_pred HhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 298 MAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 298 ~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
.+....-. --+++..-|++.+.+..-.+.
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHH
Confidence 88632211 124666667777666554443
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.07 E-value=4e-05 Score=74.12 Aligned_cols=192 Identities=20% Similarity=0.220 Sum_probs=122.8
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeE-EEEEcCCCcCHHHHHHHH--
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQV-VFSEVSESQDIRKIQREI-- 202 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~v~~~~~~~~l~~~i-- 202 (679)
+....++.|.+..+.-+.+.+......+...+|++|.|||+-|+.++...-..+.|.+. +=.++|....+.-+-.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 45567788999999999999888778899999999999999999999887666677664 334555544332111111
Q ss_pred HHHhCCCCCccchhHHHHHHHHHHHcCCc-eEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCcchhc-ccCCCc
Q 005747 203 ADKLGLKFDEESESGRARRLHDRLKKEKR-ILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSLDTLS-TKMDSQ 278 (679)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-~~~~~~ 278 (679)
..++......... ..-++ -.+|||+++.. +.|..+..........+|.|+.+..-+... ......
T Consensus 112 fakl~~~~~~~~~-----------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 112 FAKLTVLLKRSDG-----------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred HHHHhhccccccC-----------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 0011000000000 00123 48899998775 568877666655566777777666544332 222334
Q ss_pred ceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 005747 279 KNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP-VAIVTV 329 (679)
Q Consensus 279 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP-lai~~~ 329 (679)
..+..++|.+++..+-+...+..+...-+ .+..+.|++.++|-- -|+.++
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHH
Confidence 57889999999998888887763332222 356788999999853 344433
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.05 E-value=6.1e-05 Score=73.49 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=93.2
Q ss_pred HHHHHHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccch
Q 005747 137 SILNEITDALK-NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESE 215 (679)
Q Consensus 137 ~~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~ 215 (679)
.....+.++.. ....+.+.|+|..|+|||+||+.+++.....+ ....+++...... . +
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~----~--------- 85 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A----F--------- 85 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----H---------
Confidence 34444555444 23456889999999999999999999764321 2345555443210 0 0
Q ss_pred hHHHHHHHHHHHcCCceEEEEecCCCccch--hhcCCCCCC-CCCCc-EEEEeecCcchhcc-------cCCCcceEEec
Q 005747 216 SGRARRLHDRLKKEKRILVILDNIWGNLDL--KAAGIPHGD-DHRGC-KVLLTARSLDTLST-------KMDSQKNFSVS 284 (679)
Q Consensus 216 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~l~~~~~~-~~~gs-~iivTtR~~~v~~~-------~~~~~~~~~l~ 284 (679)
... ...-+||+||+.....+ ..+...+.. ...+. .+|+|++....... .......+++.
T Consensus 86 --------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~ 155 (227)
T PRK08903 86 --------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELK 155 (227)
T ss_pred --------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEec
Confidence 011 23357899999654221 122112211 12333 46666664321110 12224688999
Q ss_pred CCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 005747 285 FLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALR 334 (679)
Q Consensus 285 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~ 334 (679)
++++++-..++.+.+...... --++....+++.+.|.+..+..+-..+.
T Consensus 156 pl~~~~~~~~l~~~~~~~~v~-l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 156 PLSDADKIAALKAAAAERGLQ-LADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999988777777654321111 1246777788888888887766655543
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00018 Score=78.85 Aligned_cols=180 Identities=14% Similarity=0.200 Sum_probs=109.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC--------------------CCCeEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK--------------------LFDQVV 185 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~ 185 (679)
.....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...... +++. +
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~ 91 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-I 91 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-E
Confidence 3456788999999999999986654 4688999999999999999998754211 1111 1
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCc
Q 005747 186 FSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGC 259 (679)
Q Consensus 186 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 259 (679)
++.......+. .+..+.+.+. .+++-++|+|++.... .+..+...+....+.+
T Consensus 92 ~idgas~~~vd---------------------dIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~ 150 (563)
T PRK06647 92 EIDGASNTSVQ---------------------DVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYI 150 (563)
T ss_pred EecCcccCCHH---------------------HHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCE
Confidence 11111111111 1222222111 2556689999986553 3555555554444566
Q ss_pred EEEEeecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 260 KVLLTARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 260 ~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
.+|.+|.. ..+..........++..+++.++..+.+.+.+...... --.+....|++.++|.+-.+..+
T Consensus 151 vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 151 VFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred EEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 66666543 23322222334578999999999988888776432211 11466777899999977544433
No 139
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.4e-05 Score=82.19 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=40.0
Q ss_pred cCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccc-cccccchhhhcCcCCCEEeccCCcCccccChhhhcCCccccee
Q 005747 460 GLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEEL 538 (679)
Q Consensus 460 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L 538 (679)
..+.+++.|++++|.++.++. -..+|+.|.++++ .++.+|..+. .+|++|++++|..+..+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------ccceE
Confidence 345666677777666665442 1235666666653 4555555442 4566666666643444443 34555
Q ss_pred ecCCCC
Q 005747 539 YMGPRS 544 (679)
Q Consensus 539 ~l~~n~ 544 (679)
++++|.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 555443
No 140
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=6e-06 Score=78.04 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=42.2
Q ss_pred CceEEEEeecccCCC-----CCccccCCCCCCEEEcCCCCCCC------------chhhcCCCCCcEEEccccccc-ccc
Q 005747 440 EQVRVINVSYMNLLS-----LPSSLGLLSNLQTLSLYNCKLLD------------ITVIRDLKKLEVLCLRGSDIK-RLP 501 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~~------------~~~~~~l~~L~~L~L~~n~i~-~lp 501 (679)
..+..++||+|.+.. +...+.+-.+|+..+++.-.... .+.+-++++|+..+||.|.+. ..|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 356667777776652 33345555666666665432111 133445666666666666554 233
Q ss_pred h----hhhcCcCCCEEeccCCc
Q 005747 502 V----EVGELTLLRLLDLRDCR 519 (679)
Q Consensus 502 ~----~i~~l~~L~~L~l~~n~ 519 (679)
+ -|+.-+.|.+|.+++|.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC
Confidence 2 23445556666666654
No 141
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1.2e-06 Score=83.72 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=116.5
Q ss_pred CCCCCCEEEcCCCCCCCc---hhhc-CCCCCcEEEcccccccccc---hhhhcCcCCCEEeccCCcCccccChhhhcCCc
Q 005747 461 LLSNLQTLSLYNCKLLDI---TVIR-DLKKLEVLCLRGSDIKRLP---VEVGELTLLRLLDLRDCRELEIIPPNVLSKLS 533 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~~~---~~~~-~l~~L~~L~L~~n~i~~lp---~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~ 533 (679)
.+..+..|.+.++.|... ..|+ ..+.++.|||.+|.|+... .-+.+|+.|++|+|+.|.+...+... -..+.
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-ccccc
Confidence 344566777778877663 3343 5678999999999988543 34568999999999998854443321 13567
Q ss_pred ccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC--cc---cccccceeEEEEcCccccccccccc
Q 005747 534 HLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR--GL---FLEKLERYKILIGGVWGWEYADIWC 608 (679)
Q Consensus 534 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~--~~---~l~~L~~L~l~~~~~~~~~~~~~~l 608 (679)
+|+.|-|.+..+ .|. ..-..+..++.++.|++|.|++..+-. .. .-+.+.+|....|....|.
T Consensus 122 nl~~lVLNgT~L-~w~-----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~------ 189 (418)
T KOG2982|consen 122 NLRVLVLNGTGL-SWT-----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL------ 189 (418)
T ss_pred ceEEEEEcCCCC-Chh-----hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH------
Confidence 899999988655 221 233456778888899888886543211 11 1123333333222211111
Q ss_pred cEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccC
Q 005747 609 REFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 609 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
........||++..+.+..|.+.. ...+-.++.+|.+-.|+|+.|++...
T Consensus 190 ------------~~~~l~r~Fpnv~sv~v~e~PlK~---~s~ek~se~~p~~~~LnL~~~~idsw 239 (418)
T KOG2982|consen 190 ------------NKNKLSRIFPNVNSVFVCEGPLKT---ESSEKGSEPFPSLSCLNLGANNIDSW 239 (418)
T ss_pred ------------HHHhHHhhcccchheeeecCcccc---hhhcccCCCCCcchhhhhcccccccH
Confidence 112234568999999999987333 33333457789999999999988643
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00021 Score=72.70 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=112.0
Q ss_pred ccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC-------------CCCeEEEEEcCCCcCH
Q 005747 130 EAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK-------------LFDQVVFSEVSESQDI 195 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~v~~~~~~ 195 (679)
..++|.+..++.+...+..++. +...++|+.|+||+++|..+++..-... ......|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999987774 7999999999999999999988753221 1122344432110000
Q ss_pred HHHHHHHHHHhCCC--CCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEee-c
Q 005747 196 RKIQREIADKLGLK--FDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTA-R 266 (679)
Q Consensus 196 ~~l~~~i~~~l~~~--~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R 266 (679)
..+-..-++..+.. ....-..+.+..+.+.+. .+++-++|+|++.... ....+...+.... .+.+|++| .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 00001111111110 001111223334444443 2566789999986542 2333333332222 33455544 4
Q ss_pred CcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 267 SLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 267 ~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
...+..........+++.++++++..+.+.+....... ......++..++|.|..+..+
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 44444444455679999999999999999876432111 111357889999999766543
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=81.37 Aligned_cols=183 Identities=14% Similarity=0.180 Sum_probs=108.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCC-------------------CeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLF-------------------DQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~w 186 (679)
.....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++...-.+.. ..++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 3456788999999999999987665 567899999999999999998875321111 00112
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcE
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCK 260 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 260 (679)
++......+++ +..+.+.+. .+++-++|+|++.... ....+...+......+.
T Consensus 93 id~~s~~~v~~---------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 93 IDGASNTGVDD---------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred eeccCccCHHH---------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 22111112222 222222221 2455689999986543 33444433333334556
Q ss_pred EEEeec-CcchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh-HHHHHHHH
Q 005747 261 VLLTAR-SLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP-VAIVTVAT 331 (679)
Q Consensus 261 iivTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP-lai~~~~~ 331 (679)
+|++|. ...+..........+++.+++.++....+...+......- -.+....|++.++|.. .|+..+-.
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 665554 3444333233456888999999998888877654322111 1356777889998865 45444433
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=5.2e-05 Score=81.11 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
..+.|+|..|+|||+|++++++.......-..++|++. .++...+...++.. .+......+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 46889999999999999999997654322234556544 45666666555321 012233333333 34
Q ss_pred eEEEEecCCCcc---ch-hhcCCCCCC-CCCCcEEEEeecCcch-h-------cccCCCcceEEecCCChHHHHHHHHHH
Q 005747 232 ILVILDNIWGNL---DL-KAAGIPHGD-DHRGCKVLLTARSLDT-L-------STKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 232 ~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR~~~v-~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
-+||+||+.... .+ +.+...+.. ...|..||+|+....- . ...+..+-++++.+++.++..+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996432 12 222211111 1234468888764211 1 122344568899999999999999988
Q ss_pred hCCCCC-CccHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 299 AGDYVE-GNELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 299 ~~~~~~-~~~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
+..... ..--+++..-|++.++|.|-.+..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 853221 1222578888999999998776655533
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=1.6e-05 Score=81.86 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=83.9
Q ss_pred hhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhccccccc
Q 005747 480 VIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNAS 559 (679)
Q Consensus 480 ~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 559 (679)
.+..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|.. + .++|++|++++|.. ...+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~-------L~sLP-- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPE-------ISGLP-- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccc-------ccccc--
Confidence 35567999999999999999982 2346999999998888888865 3 46899999999833 12234
Q ss_pred ccccCCCcEEEEEeecCC---CCCCcccccccceeEEEEcCc---cccc-cccccccEEEEecCccccchHHHHHHhccc
Q 005747 560 LHELKHLISLELQIQDVN---TLPRGLFLEKLERYKILIGGV---WGWE-YADIWCREFKIDLDSKIRLKDGLILKLQGI 632 (679)
Q Consensus 560 l~~l~~L~~L~l~~n~l~---~lp~~~~l~~L~~L~l~~~~~---~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L 632 (679)
.+|+.|+++++... .+|. +|+.|.+..++. ...+ ..+.+++.|.+..+.....+.. ...+|
T Consensus 112 ----~sLe~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~---LP~SL 179 (426)
T PRK15386 112 ----ESVRSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK---LPESL 179 (426)
T ss_pred ----cccceEEeCCCCCcccccCcc-----hHhheeccccccccccccccccCCcccEEEecCCCcccCccc---ccccC
Confidence 45778888876644 4444 456666533221 1111 1224556666655444333322 12456
Q ss_pred ceeecccc
Q 005747 633 EDLWLSDL 640 (679)
Q Consensus 633 ~~L~L~~~ 640 (679)
+.|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 66666554
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=8.3e-05 Score=74.10 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=78.0
Q ss_pred cccchHHHHHHHHH---Hhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 131 AFESRMSILNEITD---ALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 131 ~~~gr~~~~~~l~~---~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
.++|.+..++++.+ +.. .+...-+.++|++|+||||+|+.+++.......-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 46677666655543 321 123456789999999999999999887532111111122333221
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc----------cchhhcCCCCCCCCCCcEEEEee
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN----------LDLKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTt 265 (679)
++... .++ .. .. .+.+.+.....-+|++|++... +..+.+............+|+++
T Consensus 84 -~l~~~---~~g-----~~-~~---~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVGE---YIG-----HT-AQ---KTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhhh---hcc-----ch-HH---HHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 011 01 11 1122222222358899998642 12233322222222333555555
Q ss_pred cCcchh-----c--ccCCCcceEEecCCChHHHHHHHHHHhC
Q 005747 266 RSLDTL-----S--TKMDSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 266 R~~~v~-----~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
...+.- . ........+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 432210 0 0111235688999999999999987765
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.95 E-value=8.1e-05 Score=85.86 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=100.5
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC----CCeEEE-EEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL----FDQVVF-SEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~v~~~~~~~~l~~~i~ 203 (679)
...++||+.++.++++.|......-+.++|.+|+||||+|+.++++...... .+..+| ++++.-..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a--------- 256 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA--------- 256 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc---------
Confidence 4568899999999999988766667789999999999999999998643321 122332 33322100
Q ss_pred HHhCCCCCccchhHHHHHHHHHHH-cCCceEEEEecCCCcc-------chh--hcCCCCCCCCCCcEEEEeecCcchh--
Q 005747 204 DKLGLKFDEESESGRARRLHDRLK-KEKRILVILDNIWGNL-------DLK--AAGIPHGDDHRGCKVLLTARSLDTL-- 271 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-------~~~--~l~~~~~~~~~gs~iivTtR~~~v~-- 271 (679)
+.. ....-...+..+.+.+. .+++.+|++|++.... ..+ .+..+... ...-++|-||...+.-
T Consensus 257 ---g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~~~ 331 (852)
T TIGR03345 257 ---GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYKKY 331 (852)
T ss_pred ---ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHhhh
Confidence 000 00011123334444443 2568999999975431 111 12222211 1234566666543210
Q ss_pred ---c-ccCCCcceEEecCCChHHHHHHHHHHhCC---CCCCccHHHHHHHHHHHcCCC
Q 005747 272 ---S-TKMDSQKNFSVSFLKEEEAWSLFKKMAGD---YVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 272 ---~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~~~~~~I~~~~~gl 322 (679)
. -.......+.+.+++.+++.+++...... ...-.-..+....+++.+.++
T Consensus 332 ~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 0 01112358999999999999997554421 111111234556666666653
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=5e-06 Score=92.89 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=94.6
Q ss_pred CceEEEEeecccCC--CCCccc-cCCCCCCEEEcCCCCCCCc---hhhcCCCCCcEEEcccccccccchhhhcCcCCCEE
Q 005747 440 EQVRVINVSYMNLL--SLPSSL-GLLSNLQTLSLYNCKLLDI---TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLL 513 (679)
Q Consensus 440 ~~L~~L~l~~n~l~--~lp~~~-~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L 513 (679)
.+|+.|++++...- .-|..+ ..+|+|+.|.+++=.+... ....++++|+.||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 58999999886543 122223 3689999999988776552 3456899999999999999988 689999999999
Q ss_pred eccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 514 DLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 514 ~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
.+.+=.+...-.-..+-+|++|++||+|......... +...--+.-..|++|+.||.|++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-IIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchH-HHHHHHHhcccCccccEEecCCcchh
Confidence 9887443221111125689999999999865533221 01111122344789999999988776
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.94 E-value=0.00015 Score=76.11 Aligned_cols=175 Identities=17% Similarity=0.227 Sum_probs=99.8
Q ss_pred CCcccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
.....+.|-+..+++|.+.+. . ...+-+.++|++|.|||++|+.+++..... | +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~---- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG---- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh----
Confidence 345567888888888777653 1 235678999999999999999999876532 2 22211
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~ 255 (679)
..+... .++ ........+........+.+|++|+++... . +..+...+. ..
T Consensus 213 --s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 --SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred --HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111111 111 111233444444455678999999975320 0 111111111 12
Q ss_pred CCCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
..+..||.||...+.+.... .-...+++...+.++...+|..........++ -...++++.+.|+-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 24567888887655443221 23457899999999988888876653222211 11345566666653
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.92 E-value=0.00012 Score=84.97 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=90.7
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC---C-CeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 130 EAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL---F-DQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
..++||+++++++++.|......-+.++|++|+|||++|+.++........ . +..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 467899999999999998666666789999999999999999998643211 1 234442 1 1111110
Q ss_pred hCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc---------chhhcCCCCCCCCCCcEEEEeecCcchh-----
Q 005747 206 LGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL---------DLKAAGIPHGDDHRGCKVLLTARSLDTL----- 271 (679)
Q Consensus 206 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~----- 271 (679)
|..... .-...+..+.+.+...++.+|++|++.... ....+..+... ...-++|-+|...+.-
T Consensus 249 -g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 -GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred -cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHHhc
Confidence 111111 122345556665555568999999984221 11112112111 1223556555543321
Q ss_pred -cccCCCcceEEecCCChHHHHHHHHHH
Q 005747 272 -STKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 272 -~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
.........+.+...+.++...+++..
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 011122357788899999988887654
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=97.91 E-value=0.00023 Score=71.49 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++.... .|. .. .....+.+. ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~-----~~-~~~~~~l~~---a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH-----TA-PKTKEVLKK---AMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc-----ch-HHHHHHHHH---ccC
Confidence 3478999999999999999988753221111112444442 1222111 111 11 111222222 223
Q ss_pred eEEEEecCCCc-----------cchhhcCCCCCCCCCCcEEEEeecCcchhc-------ccCCCcceEEecCCChHHHHH
Q 005747 232 ILVILDNIWGN-----------LDLKAAGIPHGDDHRGCKVLLTARSLDTLS-------TKMDSQKNFSVSFLKEEEAWS 293 (679)
Q Consensus 232 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-------~~~~~~~~~~l~~L~~~e~~~ 293 (679)
-+|++|++... +....+.........+.+||.++....... ........+.+.+++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999998542 112222222223334566777765432210 011234588999999999999
Q ss_pred HHHHHhC
Q 005747 294 LFKKMAG 300 (679)
Q Consensus 294 Lf~~~~~ 300 (679)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888764
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.0005 Score=75.77 Aligned_cols=193 Identities=18% Similarity=0.169 Sum_probs=106.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|.+..++.+.+++..++ .+.+.++|+.|+||||+|+.+.+.....+.-+. .+++.-...+.|...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 345678899999999999998655 456778999999999999999877532211000 000000111111110
Q ss_pred hCCCC-----CccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeec-Ccchhcc
Q 005747 206 LGLKF-----DEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTAR-SLDTLST 273 (679)
Q Consensus 206 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR-~~~v~~~ 273 (679)
..... ......+.+..+.+... .+++-++|+|++... ..+..+...+........+|++|. ...+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 00000 00011112223333321 255678899998654 234444433333334455555554 3333222
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
.......+++.+++.++....+...+.......+ .+....|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 2233567889999999998888877643221111 3567778888988775443
No 153
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.88 E-value=0.0001 Score=73.58 Aligned_cols=164 Identities=19% Similarity=0.215 Sum_probs=103.3
Q ss_pred ccccchHHHHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 130 EAFESRMSILNEITDALKNGD---VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
+.+.+|+.++..+..++.+.. +..|.|+|.+|.|||.+++++.+..... .+|+++-..++.+.++.+|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 456699999999999887443 3456899999999999999999987433 58999999999999999999998
Q ss_pred CC-CCCccch---hHHHHHHHHHHH-------cCCceEEEEecCCCccchhhcCCC------CCCCCCCcEEEEeecC-c
Q 005747 207 GL-KFDEESE---SGRARRLHDRLK-------KEKRILVILDNIWGNLDLKAAGIP------HGDDHRGCKVLLTARS-L 268 (679)
Q Consensus 207 ~~-~~~~~~~---~~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~l~~~------~~~~~~gs~iivTtR~-~ 268 (679)
+. +.+.... .+........+. .++.++||||+++...+.+....+ -.-..+...|+...-. +
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 62 2221111 111111111111 256899999999765544332110 0012233333333322 2
Q ss_pred chhcccCCCc--ceEEecCCChHHHHHHHHHH
Q 005747 269 DTLSTKMDSQ--KNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 269 ~v~~~~~~~~--~~~~l~~L~~~e~~~Lf~~~ 298 (679)
......++.. .++.....+.+|..+++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2211123333 35666788899998888664
No 154
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=8.6e-05 Score=71.15 Aligned_cols=135 Identities=18% Similarity=0.018 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
+.+.|||++|+|||+|++.+++.... .++. ..+.. . +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~--------------------~-------~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN--------------------E-------EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc--------------------h-------hHH--hcC
Confidence 56899999999999999998776531 1211 00000 0 011 123
Q ss_pred eEEEEecCCCccchhhcCCCCCC-CCCCcEEEEeecCcchh------cccCCCcceEEecCCChHHHHHHHHHHhCCCCC
Q 005747 232 ILVILDNIWGNLDLKAAGIPHGD-DHRGCKVLLTARSLDTL------STKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVE 304 (679)
Q Consensus 232 ~LlVlDdv~~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 304 (679)
-++++||+....+ ..+...+.. ...|..+|+|++..... ...+....+++++++++++...++.+.+....-
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 5788999964321 111111100 13466899998853321 112334558999999999988888877653211
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 005747 305 GNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 305 ~~~~~~~~~~I~~~~~glPlai 326 (679)
.--+++..-|++.+.|.--.+
T Consensus 166 -~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 166 -TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred -CCCHHHHHHHHHHccCCHHHH
Confidence 111467777787777654433
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.86 E-value=0.00015 Score=82.98 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=90.6
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC---C-CeEEE-EEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL---F-DQVVF-SEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~w-v~v~~~~~~~~l~~~i~ 203 (679)
...++||+++++++++.|......-+.++|++|+|||++|+.+++....... + +..+| ++++ .+..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l~a--- 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SLLA--- 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HHhh---
Confidence 3468899999999999998666667789999999999999999998643221 1 33333 2211 1110
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc----------chhhcCCCCCCCCCC-cEEEEeecCcchh-
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL----------DLKAAGIPHGDDHRG-CKVLLTARSLDTL- 271 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~iivTtR~~~v~- 271 (679)
+.... ..-...+..+.+.+...++.+|++|++.... +...+..+.. .+| -++|-+|...+..
T Consensus 252 ---~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 ---GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred ---hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHHH
Confidence 00000 1112344455555544567999999985321 1111211211 223 3455554432110
Q ss_pred ----cc-cCCCcceEEecCCChHHHHHHHHHHh
Q 005747 272 ----ST-KMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 272 ----~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
.. .......+++.+++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 00 01123478999999999999998654
No 156
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=2.4e-05 Score=70.99 Aligned_cols=123 Identities=21% Similarity=0.224 Sum_probs=91.4
Q ss_pred CCEEEcCCCCCCCchhhcC-CCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCC
Q 005747 465 LQTLSLYNCKLLDITVIRD-LKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPR 543 (679)
Q Consensus 465 L~~L~L~~n~l~~~~~~~~-l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n 543 (679)
=+.++|.+.++..+..++- +.+...+||++|++..++ .+..++.|.+|.|++|. +..+.+.+-..+++|..|.+.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCc
Confidence 5667777777655444432 346789999999998877 47889999999999988 55666664556788999999999
Q ss_pred CCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-----cccccceeEEEE
Q 005747 544 SFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-----FLEKLERYKILI 595 (679)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-----~l~~L~~L~l~~ 595 (679)
.+..+. + ...+..+++|++|.+-+|+++.....- .+++|+.|+...
T Consensus 99 si~~l~----d--l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELG----D--LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhh----h--cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 986542 1 234677889999999999988654321 677888877643
No 157
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.85 E-value=0.00013 Score=77.13 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=90.0
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...+.|.+..+++|.+++. . ...+-+.++|++|+|||++|+.+++..... | +.+..+.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se---- 252 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE---- 252 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch----
Confidence 4456788888888877663 1 234568899999999999999999976532 3 2222111
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCC--CCCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHG--DDHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~ 257 (679)
+... ..+ ........+......+.+.+|++|+++... . +..+...+. ....
T Consensus 253 --L~~k---~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 --LIQK---YLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred --hhhh---hcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1110 001 011223334444444678899999974220 0 001111110 1123
Q ss_pred CcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCC
Q 005747 258 GCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGD 301 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 301 (679)
+.+||.||...+.+.... .....+++...+.++..++|..+...
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 567888888655543222 23468899999999999999987653
No 158
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.85 E-value=0.00032 Score=70.56 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCce
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRI 232 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 232 (679)
-+.++|++|+|||++|+.++............-|+.++. .++... .+|. .. .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~---~~g~-----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQ---YIGH-----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHh---hccc-----ch-HHHHHHHHHc---cCc
Confidence 588999999999999988887754322221112444432 122111 1121 11 1122222222 336
Q ss_pred EEEEecCCCc-----------cchhhcCCCCCCCCCCcEEEEeecCcchhcc-------cCCCcceEEecCCChHHHHHH
Q 005747 233 LVILDNIWGN-----------LDLKAAGIPHGDDHRGCKVLLTARSLDTLST-------KMDSQKNFSVSFLKEEEAWSL 294 (679)
Q Consensus 233 LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~L 294 (679)
+|++|++... ..+..+...+.....+.+||.++.....-.. .......+++.+++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998522 1122232232233345566666643221100 011235789999999999999
Q ss_pred HHHHhC
Q 005747 295 FKKMAG 300 (679)
Q Consensus 295 f~~~~~ 300 (679)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888764
No 159
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.84 E-value=0.00016 Score=67.04 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=70.7
Q ss_pred CcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhC
Q 005747 128 DYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLG 207 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~ 207 (679)
...+++|-++.++++.-...+++.+-+.|.||+|+||||-+..+++..-....=+.+.-.+.|+...+.-+-.+|- .+.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK-~FA 103 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK-MFA 103 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH-HHH
Confidence 3457899999999998888899999999999999999999999998876654445566666666655443333321 110
Q ss_pred CCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 208 LKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
+-.-.+..|+.-++|||..++.
T Consensus 104 -------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 -------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -------------HhhccCCCCceeEEEeeccchh
Confidence 0001122366778999998775
No 160
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.83 E-value=0.00042 Score=75.79 Aligned_cols=176 Identities=19% Similarity=0.216 Sum_probs=96.6
Q ss_pred CCCcccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 126 NKDYEAFESRMSILNEITDALK---N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
.....++.|-++.++++.+++. . ...+-+.++|++|+|||++|+.++...... |+.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH--
Confidence 3445567787777666555432 1 123458899999999999999999875432 222221
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------ch----hhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------DL----KAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~~~--~~ 255 (679)
.++.... .+. .......+.+......+.+|++|+++... .+ ..+...+. ..
T Consensus 122 --~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111110 010 11233344444444567999999985421 01 11111111 12
Q ss_pred CCCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
..+-.||.||...+.+... ..-...+.+...+.++-.++|...........+ .....+++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 2344566666554322211 123468899999999999999887754322211 22347778887743
No 161
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00037 Score=66.95 Aligned_cols=177 Identities=16% Similarity=0.151 Sum_probs=101.0
Q ss_pred CCcccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALK-----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
..-.+|+|.++.++++.=++. +...--+.++|++|.||||||.-+++...+. + -++-.....-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK------ 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEK------ 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccC------
Confidence 445689999999988876665 4456678999999999999999999998765 1 1111110000
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc---------chhhcCCC-CCCCCCCcE-----------
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL---------DLKAAGIP-HGDDHRGCK----------- 260 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~-~~~~~~gs~----------- 260 (679)
...+..+...|. ..=++.+|.+.... ..+.+... ....++++|
T Consensus 91 --------------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 --------------PGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred --------------hhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 111112222222 23355556553221 01111000 001122232
Q ss_pred EEEeecCcchhc-ccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 261 VLLTARSLDTLS-TKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 261 iivTtR~~~v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
|=-|||.-.+-. .......+.+++..+.+|-.++..+.+..-.. .--++-+.+|+++..|-|--+.-+-+.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 334888533321 11223457889999999999999888752111 111467899999999999655444333
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00046 Score=70.56 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=90.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC--------------------CCCeEEEEEcC---CCcCHHHHHHHHHHHhC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK--------------------LFDQVVFSEVS---ESQDIRKIQREIADKLG 207 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v~---~~~~~~~l~~~i~~~l~ 207 (679)
.+.+.++|+.|+||||+|+.+++..--.+ |-| ..|+... +...++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id----------- 89 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVD----------- 89 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHH-----------
Confidence 45788999999999999999998754221 111 2233211 111222
Q ss_pred CCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcce
Q 005747 208 LKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKN 280 (679)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~ 280 (679)
.+..+.+.+. .+++-++|+|++... .....+...+.....++.+|+||.+.. +..........
T Consensus 90 ----------~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 90 ----------QVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQ 159 (328)
T ss_pred ----------HHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhcee
Confidence 2222222221 234455677998765 234444444433345677777777643 33333444678
Q ss_pred EEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 281 FSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 281 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
+.+.+++.+++.+.+....... ..+.+..++..++|.|..+..+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998887654211 1244567789999999765543
No 163
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=8.8e-05 Score=77.38 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=72.7
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 130 EAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
.++++.++..+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+.- .+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCC
Confidence 34667888899998888643 57888999999999999999998876667888999999999887776542210 0100
Q ss_pred CCccchhHHHHHHHHHHH--cCCceEEEEecCCCc
Q 005747 210 FDEESESGRARRLHDRLK--KEKRILVILDNIWGN 242 (679)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 242 (679)
.. -..+...++..... .++++++|+|++...
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00111112222222 246899999998544
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.80 E-value=0.00035 Score=73.62 Aligned_cols=164 Identities=21% Similarity=0.216 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCc
Q 005747 134 SRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDE 212 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~ 212 (679)
.|..-..++++.+..... ++.|.|+-++||||+++.+....... .+++...+.. +..++ .+..+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~-------- 85 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLR-------- 85 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHH--------
Confidence 344556666666654433 99999999999999997776665433 5555444332 11111 11111
Q ss_pred cchhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhc-----ccCCCcceEEecCCC
Q 005747 213 ESESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLS-----TKMDSQKNFSVSFLK 287 (679)
Q Consensus 213 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-----~~~~~~~~~~l~~L~ 287 (679)
....+...++..|+||.|.....|......+.+.++. +|++|+-+..... ...+....+++-||+
T Consensus 86 ---------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 86 ---------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ---------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 1111111256899999999999999876666665555 7888888755442 223445689999999
Q ss_pred hHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 288 EEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 288 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
-.|...+-.. ......... .-+-.-..||.|-++.
T Consensus 156 F~Efl~~~~~----~~~~~~~~~-~f~~Yl~~GGfP~~v~ 190 (398)
T COG1373 156 FREFLKLKGE----EIEPSKLEL-LFEKYLETGGFPESVK 190 (398)
T ss_pred HHHHHhhccc----ccchhHHHH-HHHHHHHhCCCcHHHh
Confidence 9887664330 000001111 2222335788887665
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=0.00015 Score=64.60 Aligned_cols=90 Identities=29% Similarity=0.199 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
+.+.|+|++|+||||+++.++....... ..++++..+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999876542 34666665554332222211 11111111112222334445555544345
Q ss_pred eEEEEecCCCccc
Q 005747 232 ILVILDNIWGNLD 244 (679)
Q Consensus 232 ~LlVlDdv~~~~~ 244 (679)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987643
No 166
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=2.8e-06 Score=80.47 Aligned_cols=99 Identities=26% Similarity=0.230 Sum_probs=85.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccch--hhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPV--EVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~l~~ 517 (679)
.+++.|++.+|.+..+. ...+++.|++|.|+-|+|+.+..+..+++|+.|+|..|.|..+.+ -+.++++|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 46788999999998774 456899999999999999999999999999999999999987764 467999999999999
Q ss_pred CcCccccChh----hhcCCcccceee
Q 005747 518 CRELEIIPPN----VLSKLSHLEELY 539 (679)
Q Consensus 518 n~~~~~lp~~----~~~~l~~L~~L~ 539 (679)
|...+.-+.+ ++.-|++|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 9888776654 467789999886
No 167
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.74 E-value=0.00036 Score=74.40 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
..+.|+|..|+|||+|++++++.......-..++|++.. ++...+...+... ......+.+. ..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 468999999999999999999987644222346676543 3344444444321 1223334443 23
Q ss_pred eEEEEecCCCccc---h-hhcCCCCCC-CCCCcEEEEeecCcch--------hcccCCCcceEEecCCChHHHHHHHHHH
Q 005747 232 ILVILDNIWGNLD---L-KAAGIPHGD-DHRGCKVLLTARSLDT--------LSTKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 232 ~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR~~~v--------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
-+|++||+..... + +.+...+.. ...|..+|+|+....- +...+.....+++.+.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999965321 1 111111110 1234568887764211 1112333457999999999999999998
Q ss_pred hCCCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 299 AGDYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 299 ~~~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
+......- -+++..-|++.+.|..-.+
T Consensus 281 ~~~~~~~l-~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 281 AEEEGLEL-PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHcCCCC-CHHHHHHHHHhcCCCHHHH
Confidence 86432211 1567778888888866543
No 168
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00035 Score=74.80 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=103.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
..-+.|+|.+|+|||+|++++++.......-..++|++. .++...+...+... ......+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 346999999999999999999998754321234677754 34555555544311 1122333333 23
Q ss_pred ceEEEEecCCCcc---ch-hhcCCCCCC-CCCCcEEEEeecC-cchh-------cccCCCcceEEecCCChHHHHHHHHH
Q 005747 231 RILVILDNIWGNL---DL-KAAGIPHGD-DHRGCKVLLTARS-LDTL-------STKMDSQKNFSVSFLKEEEAWSLFKK 297 (679)
Q Consensus 231 ~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR~-~~v~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 297 (679)
.-+|++||+.... .+ ..+...+.. ...|..||+||.. ..-+ .........+++++.+.++-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 111111110 1234568888752 1111 11233456889999999999999998
Q ss_pred HhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH------hhc-CCChhHHHHHHHHh
Q 005747 298 MAGDYVEGNELKEVARDVAKECAGLPVAIVTVATA------LRD-NNSLFDWKDALEQL 349 (679)
Q Consensus 298 ~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~------L~~-~~~~~~w~~~l~~l 349 (679)
.+...... --+++..-|++.+.|..-.+.-+-.. +.+ .-+....++++..+
T Consensus 275 ~~~~~~~~-l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCCC-CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 87532111 11467778888887754333222111 122 13566666666654
No 169
>PRK10536 hypothetical protein; Provisional
Probab=97.73 E-value=0.00038 Score=67.23 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=43.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 186 (679)
.+...+.+|......++.++.+. .+|.+.|.+|.|||+||.++..+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 44556778888888999888764 49999999999999999999886432233554443
No 170
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.72 E-value=0.00033 Score=75.70 Aligned_cols=182 Identities=18% Similarity=0.168 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
...+.|+|..|+|||+|++.+++.......-..++|++..+ +...+...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 35689999999999999999999876542223466665543 233333333211 1123344443 3
Q ss_pred ceEEEEecCCCccc---h-hhcCCCCCC-CCCCcEEEEeecCcc--h------hcccCCCcceEEecCCChHHHHHHHHH
Q 005747 231 RILVILDNIWGNLD---L-KAAGIPHGD-DHRGCKVLLTARSLD--T------LSTKMDSQKNFSVSFLKEEEAWSLFKK 297 (679)
Q Consensus 231 ~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR~~~--v------~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 297 (679)
.-+||+||+..... + +.+...+.. ...|..+|+||.... + +...+.....+++++++.++-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999964311 1 112111110 123445788776421 1 112234456899999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHcCCChHHHHHH----HHH--hhc-CCChhHHHHHHHHh
Q 005747 298 MAGDYVEGNELKEVARDVAKECAGLPVAIVTV----ATA--LRD-NNSLFDWKDALEQL 349 (679)
Q Consensus 298 ~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~----~~~--L~~-~~~~~~w~~~l~~l 349 (679)
.+..... .--+++..-|++.+.|..-.+.-+ ..+ +.+ .-+....+.++..+
T Consensus 292 ~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8763211 112467788888888876543322 211 111 12566677777664
No 171
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=1.6e-05 Score=75.21 Aligned_cols=214 Identities=16% Similarity=0.043 Sum_probs=103.8
Q ss_pred CceEEEEeecccCC----CCC-------ccccCCCCCCEEEcCCCCCCC--c----hhhcCCCCCcEEEcccccccccch
Q 005747 440 EQVRVINVSYMNLL----SLP-------SSLGLLSNLQTLSLYNCKLLD--I----TVIRDLKKLEVLCLRGSDIKRLPV 502 (679)
Q Consensus 440 ~~L~~L~l~~n~l~----~lp-------~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~L~~n~i~~lp~ 502 (679)
++|++.+++.-... .+| +.+-+|++|+..+||.|.+.. + ..+++-..|.+|.|++|.+..+..
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 45666666654322 122 234567777777777777654 2 335566777777777776553221
Q ss_pred --------------hhhcCcCCCEEeccCCcCccccChhh----hcCCcccceeecCCCCCCcchhhhcccccccccccC
Q 005747 503 --------------EVGELTLLRLLDLRDCRELEIIPPNV----LSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK 564 (679)
Q Consensus 503 --------------~i~~l~~L~~L~l~~n~~~~~lp~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~ 564 (679)
...+-+.|++.....|+ +...|... +..-.+|+.+.+..|.+..-.. ....-..+..+.
T Consensus 138 ~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv--~~L~~~gl~y~~ 214 (388)
T COG5238 138 GRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGV--TMLAFLGLFYSH 214 (388)
T ss_pred hHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchh--HHHHHHHHHHhC
Confidence 12334566666666655 33333221 2222456666666665521100 001112234445
Q ss_pred CCcEEEEEeecCCCCCCc-----c-cccccceeEEEEcCccccccccccccEEEEecCccccchHH-HHHHhcccceeec
Q 005747 565 HLISLELQIQDVNTLPRG-----L-FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDG-LILKLQGIEDLWL 637 (679)
Q Consensus 565 ~L~~L~l~~n~l~~lp~~-----~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~L 637 (679)
+|+.|||..|.++...+. + .++.|+.|.+..|-+..- +.-..... ....+|+|..|-+
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~---------------G~~~v~~~f~e~~~p~l~~L~~ 279 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE---------------GVKSVLRRFNEKFVPNLMPLPG 279 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc---------------cHHHHHHHhhhhcCCCcccccc
Confidence 666666666666532211 1 234445555433322110 00000111 1112577777777
Q ss_pred cccccccccccc-----cccCcCCCCCccEEEEecCcCccC
Q 005747 638 SDLEERDVNYFV-----NELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 638 ~~~~~~~l~~i~-----~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
.+|. .-..+. +.+....+|-|..|.+.+|++.++
T Consensus 280 ~Yne--~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 280 DYNE--RRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred chhh--hcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 7766 211111 122234567777888888887654
No 172
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.70 E-value=0.0035 Score=59.90 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=59.5
Q ss_pred CCCcccccchHHHHHHHHH----HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 126 NKDYEAFESRMSILNEITD----ALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
+.....++|-+..++.|++ ++......-+.+||..|.|||++++++.+....+. .--|.|.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------
Confidence 3455678898888887765 44455666788999999999999999999876643 112223221
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHH-cCCceEEEEecCCC
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
+...+..+.+.+. ...||+|.+||+.=
T Consensus 90 -------------~L~~l~~l~~~l~~~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRDRPYKFILFCDDLSF 117 (249)
T ss_pred -------------HhccHHHHHHHHhcCCCCEEEEecCCCC
Confidence 1112233444443 35789999999853
No 173
>CHL00176 ftsH cell division protein; Validated
Probab=97.69 E-value=0.001 Score=74.00 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=96.0
Q ss_pred cccccchHHHHHHHHH---HhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH
Q 005747 129 YEAFESRMSILNEITD---ALKNG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 196 (679)
..++.|.++.++++.+ ++.+. ..+-|.++|++|+|||++|+.++...... |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 3456676665555444 44322 23568999999999999999999876432 2222211
Q ss_pred HHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCC--CCCCC
Q 005747 197 KIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHG--DDHRG 258 (679)
Q Consensus 197 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~g 258 (679)
++.... .+ ........+.+......+.+|++||++... . +..+...+. ....+
T Consensus 251 ~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111100 01 011233344455555678999999985321 1 122221111 12335
Q ss_pred cEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 259 CKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 259 s~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
-.||.||...+.+...+ .-...+.++..+.++-.++++..+......+ ......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 56666766544332211 2346889999999999999988876422111 23456677777773
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0017 Score=65.85 Aligned_cols=174 Identities=17% Similarity=0.157 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCCCC----------------eEEEEEcCCCcCHHHHH
Q 005747 137 SILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKLFD----------------QVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 137 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------------~~~wv~v~~~~~~~~l~ 199 (679)
...+.+...+..+++ +.+.++|+.|+||+++|..+++..--.+... ...|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~----- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT----- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc-----
Confidence 445667777766654 5789999999999999999887643221111 122221100000
Q ss_pred HHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecC-cchhc
Q 005747 200 REIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARS-LDTLS 272 (679)
Q Consensus 200 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~-~~v~~ 272 (679)
+.+.......+.+..+.+.+. .+++-++|+|++.... .-..+...+.....++.+|++|.+ ..++.
T Consensus 86 -------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 86 -------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000000001122223333322 2556799999987653 223333333333456767777765 44444
Q ss_pred ccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 273 TKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 273 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
........+.+.+++.+++.+.+... + .. ...+..++..++|.|+.+..+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 44445678999999999998888653 1 11 233667899999999866543
No 175
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00065 Score=74.00 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=90.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
..+.|+|..|+|||.|++++++.......-..++|++.. ++..++...+.. .....+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~--------~~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRD--------GKGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHh--------ccHHHHHHHhh--cC
Confidence 458999999999999999999986542222346676543 333344333211 11122333333 23
Q ss_pred eEEEEecCCCc---cchhh-cCCCCCC-CCCCcEEEEeecCcc--------hhcccCCCcceEEecCCChHHHHHHHHHH
Q 005747 232 ILVILDNIWGN---LDLKA-AGIPHGD-DHRGCKVLLTARSLD--------TLSTKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 232 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtR~~~--------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
=+|||||+... ..|.. +...+.. ...|..|||||+... -+...+...-++++.+.+.+.-..++.+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 58999999654 12221 1111111 123556888887521 11223455678999999999999999988
Q ss_pred hCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 299 AGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 299 ~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
+....-.- -+++..-|++.+.+..
T Consensus 459 a~~r~l~l-~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQLNA-PPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcCCCC-CHHHHHHHHHhccCCH
Confidence 76432111 1466666777766553
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0014 Score=67.52 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=88.6
Q ss_pred cccc-hHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCC--------------------CCCeEEEEE
Q 005747 131 AFES-RMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDK--------------------LFDQVVFSE 188 (679)
Q Consensus 131 ~~~g-r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~ 188 (679)
.++| .+..++.+.+.+..++ .+...++|+.|+||||+|+.+.+..--.+ |.|.. ++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eec
Confidence 3456 7778888888887665 45679999999999999999988753221 22221 221
Q ss_pred cC-CCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEE
Q 005747 189 VS-ESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKV 261 (679)
Q Consensus 189 v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~i 261 (679)
.. ....++ .+..+.+.+. .+.+-++|+|++.... ....+...+.....++.+
T Consensus 85 ~~~~~i~id---------------------~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 85 PDGQSIKKD---------------------QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cccccCCHH---------------------HHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 11 111111 2222222221 2455688999986542 334444444444556777
Q ss_pred EEeecCcc-hhcccCCCcceEEecCCChHHHHHHHHHH
Q 005747 262 LLTARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 262 ivTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
|++|.+.. +..........+++.++++++..+.+.+.
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77776533 33333345678999999999998888653
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0025 Score=63.46 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=110.3
Q ss_pred CCcccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
..+..+-|-++.+++|.+.+. + +.++=|.+||++|.|||-||++|+++.... |+.|..+
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH-
Confidence 345567788888888888764 1 246778999999999999999999987654 4444332
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCCCC--
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHGDD-- 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~-- 255 (679)
++.++- +| .....+..+++.-+.+.+.+|.+|.++... + +-.+...+..+
T Consensus 220 ---ElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ---ELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ---HHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 122211 11 223455566666666789999999875320 0 11122222222
Q ss_pred CCCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCC--CCCCccHHHHHHHHHHHcCCCh----HH
Q 005747 256 HRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGD--YVEGNELKEVARDVAKECAGLP----VA 325 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~I~~~~~glP----la 325 (679)
...-|||..|...+++... -.-...+++..-+.+.-.++|+-++.. .....+++. +++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHHH
Confidence 2345899988876666322 123468888866666667777766653 223344444 455666643 34
Q ss_pred HHHHHHHhh
Q 005747 326 IVTVATALR 334 (679)
Q Consensus 326 i~~~~~~L~ 334 (679)
+.+=|+++.
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 444455543
No 178
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.59 E-value=0.00095 Score=60.98 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCCC------------------CCeEEEEEcCCC--
Q 005747 134 SRMSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDKL------------------FDQVVFSEVSES-- 192 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~v~~~-- 192 (679)
|.++..+.|.+.+..+.. +.+.++|+.|+||+++|..+++..-.... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 566778888888876664 57899999999999999999987443221 222444444332
Q ss_pred -cCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCcc
Q 005747 193 -QDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSLD 269 (679)
Q Consensus 193 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 269 (679)
..++++. .+.+.+..... .++.-++|+||++.. .....+...+.....++++|++|++.+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 3444333 44444433211 245678999999765 344455444444456788888888755
Q ss_pred -hhcccCCCcceEEecCCC
Q 005747 270 -TLSTKMDSQKNFSVSFLK 287 (679)
Q Consensus 270 -v~~~~~~~~~~~~l~~L~ 287 (679)
+..........+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 334333445567776654
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.56 E-value=0.00097 Score=77.68 Aligned_cols=157 Identities=14% Similarity=0.178 Sum_probs=89.8
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----Ce-EEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLF----DQ-VVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~-~~wv~v~~~~~~~~l~~~i~ 203 (679)
...++||+.+++++++.|......-+.++|++|+|||++|+.++.+....... .. +++++++. +..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l~a--- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------LIA--- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------Hhh---
Confidence 34688999999999999986666677799999999999999999886432111 22 22232211 110
Q ss_pred HHhCCCCCccchhHHHHHHHHHHH-cCCceEEEEecCCCcc---------chhhcCCCCCCCCCCcEEEEeecCcchh--
Q 005747 204 DKLGLKFDEESESGRARRLHDRLK-KEKRILVILDNIWGNL---------DLKAAGIPHGDDHRGCKVLLTARSLDTL-- 271 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~-- 271 (679)
+.... ..-...+..+.+.+. .+++.+|++|++.... +...+..+... ...-++|-+|...+.-
T Consensus 243 ---~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 ---GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRKY 317 (852)
T ss_pred ---cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHHH
Confidence 00000 011223444555543 2468999999986331 11122222221 1223455555533220
Q ss_pred ---cc-cCCCcceEEecCCChHHHHHHHHHHh
Q 005747 272 ---ST-KMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 272 ---~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
.. .......+.+...+.++...++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 00 11123468899999999999987654
No 180
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.56 E-value=0.00098 Score=71.70 Aligned_cols=175 Identities=17% Similarity=0.111 Sum_probs=93.7
Q ss_pred cccccchHHHHHHHHHHhc-------C---CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH
Q 005747 129 YEAFESRMSILNEITDALK-------N---GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI 198 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 198 (679)
..++.|.+..++.+.+... . ...+-|.++|++|.|||.+|+.+++..... | +-++++.-+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~l~----- 296 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGKLF----- 296 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHHhc-----
Confidence 3456677666655543211 1 234678999999999999999999987543 2 222222111
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc--------------hhhcCCCCCCCCCCcEEEEe
Q 005747 199 QREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD--------------LKAAGIPHGDDHRGCKVLLT 264 (679)
Q Consensus 199 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~iivT 264 (679)
. ..... .......+.+......+++|++|+++.... ...+...+.....+--||.|
T Consensus 297 -~--------~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 297 -G--------GIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred -c--------cccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0 01111 122333444444445789999999863210 00111111112223345556
Q ss_pred ecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 265 ARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 265 tR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
|.+.+.+... ..-...+.++..+.++-.++|+...........-......+++.+.|+-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 6654433211 1335688899999999999998877542211100122455666776654
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.55 E-value=0.00088 Score=77.72 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=89.6
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----Ce-EEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLF----DQ-VVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~-~~wv~v~~~~~~~~l~~~i~ 203 (679)
...++||+.+++++++.|......-+.++|.+|+|||++|+.++......... .. +++++++.-..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a--------- 247 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA--------- 247 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh---------
Confidence 35688999999999999987666677899999999999999999986432111 22 33333332110
Q ss_pred HHhCCCCCccchhHHHHHHHHHHH-cCCceEEEEecCCCcc---------chhhcCCCCCCCCCCcEEEEeecCcchh--
Q 005747 204 DKLGLKFDEESESGRARRLHDRLK-KEKRILVILDNIWGNL---------DLKAAGIPHGDDHRGCKVLLTARSLDTL-- 271 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~-- 271 (679)
+.... ..-...+..+.+.+. .+++.+|++|++.... +...+..+... ...-++|-+|...+.-
T Consensus 248 ---g~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 248 ---GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQY 322 (857)
T ss_pred ---ccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHHH
Confidence 00000 011223334444432 3567999999985431 11222222221 1233555555543320
Q ss_pred ---ccc-CCCcceEEecCCChHHHHHHHHHHh
Q 005747 272 ---STK-MDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 272 ---~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
... ......+.+...+.++...+++...
T Consensus 323 ~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 323 IEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 000 1122367777778999999887654
No 182
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00027 Score=79.94 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=90.4
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCC-CC---CeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 130 EAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDK-LF---DQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
..++||+++++++++.|......-+.++|.+|+|||++|+.++....... .| ++.+|.. +...++ +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll---a-- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL---A-- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh---c--
Confidence 46789999999999998865555667999999999999999998753221 11 4444421 111111 0
Q ss_pred hCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc----------cchhhcCCCCCCCCCCcEEEEeecCcchh----
Q 005747 206 LGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN----------LDLKAAGIPHGDDHRGCKVLLTARSLDTL---- 271 (679)
Q Consensus 206 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~---- 271 (679)
|..... .-......+.+.+.+.++.+|++|++... .+...+..++.. ...-++|-+|...+..
T Consensus 256 -G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 256 -GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred -ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhh
Confidence 111111 11233445555555456789999998532 111112222221 1223455555433210
Q ss_pred -cc-cCCCcceEEecCCChHHHHHHHHHHh
Q 005747 272 -ST-KMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 272 -~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
.. .......+.+++++.+++.+++....
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 01123579999999999999998654
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.00023 Score=62.71 Aligned_cols=69 Identities=23% Similarity=0.220 Sum_probs=42.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC-ce
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK-RI 232 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 232 (679)
|.|+|++|+|||++|+.+++..... .+.++.+...+. ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999997522 345554432210 01111223333333433333 79
Q ss_pred EEEEecCCCc
Q 005747 233 LVILDNIWGN 242 (679)
Q Consensus 233 LlVlDdv~~~ 242 (679)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998643
No 184
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=2.4e-05 Score=74.13 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=25.4
Q ss_pred CCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccc--ccc-ccchhhhcCcCCCEEeccCCc
Q 005747 462 LSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGS--DIK-RLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 462 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n--~i~-~lp~~i~~l~~L~~L~l~~n~ 519 (679)
+..|+.|++.++.++....+-.|++|++|.++.| .+. .++.....+++|++|++++|+
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3344444444444444444444444555555544 222 333333333444444444444
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0056 Score=62.23 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC-------
Q 005747 138 ILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLK------- 209 (679)
Q Consensus 138 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~------- 209 (679)
..+.+...+..+. .+.+.++|+.|+||+++|+.++...--.+.... ..+..-..-+.+... ..+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g-~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAG-NHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcC-CCCCEEEEcc
Confidence 3455666666555 467889999999999999999987532111100 000000000000000 000
Q ss_pred -CCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCc-chhcccCCCcceE
Q 005747 210 -FDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSL-DTLSTKMDSQKNF 281 (679)
Q Consensus 210 -~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~ 281 (679)
....-..+.+..+.+.+. .+++-++|+|++.... ....+...+....+++.+|++|.+. .++.........+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000011222333333332 3566788899987653 3444444444445566777777654 4444434456799
Q ss_pred EecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 282 SVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 282 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
.+.++++++..+.+.+..... ...+...+..++|.|..+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999998887754211 123556678899999644
No 186
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0022 Score=70.91 Aligned_cols=174 Identities=22% Similarity=0.185 Sum_probs=106.7
Q ss_pred cccchHH---HHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH
Q 005747 131 AFESRMS---ILNEITDALKNG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI 198 (679)
Q Consensus 131 ~~~gr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 198 (679)
++.|-++ ++++++++|+++ -++=+.++|++|.|||-||++++-...+- |+.++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH------
Confidence 4455554 556666677643 25668899999999999999999887654 4444432
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-----------------chhhcCCCCCCCC--CCc
Q 005747 199 QREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-----------------DLKAAGIPHGDDH--RGC 259 (679)
Q Consensus 199 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~gs 259 (679)
+..+.+.. ....++..+...-+...+.+|.+|+++... .+.++........ .+-
T Consensus 379 --EFvE~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 --EFVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 11111111 113455566666666788999999875321 1222222221112 222
Q ss_pred EEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHH
Q 005747 260 KVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVA 325 (679)
Q Consensus 260 ~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPla 325 (679)
-++-+|+..++++.. -.-+..+.++.-+.....++|.-++.......+..++++ |+...-|.+=|
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 333455555555321 223568888888999999999998875544455567777 99999888754
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.00057 Score=75.43 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=42.0
Q ss_pred CCCcccccchHHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 126 NKDYEAFESRMSILNEITDALKN-----GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
|....+++|.++.++++..|+.+ ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44566788999999999999873 2346799999999999999999998754
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.003 Score=65.45 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=79.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
.-..+.|||..|.|||.|++++.+.......-..+++++. ++....++..+.. .......+.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 3678999999999999999999999776532234555432 2333333322211 1222333333 1
Q ss_pred CceEEEEecCCCcc---chh-hcCCCCCC-CCCCcEEEEeecCcc--------hhcccCCCcceEEecCCChHHHHHHHH
Q 005747 230 KRILVILDNIWGNL---DLK-AAGIPHGD-DHRGCKVLLTARSLD--------TLSTKMDSQKNFSVSFLKEEEAWSLFK 296 (679)
Q Consensus 230 k~~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtR~~~--------v~~~~~~~~~~~~l~~L~~~e~~~Lf~ 296 (679)
-=++++||++-.. .|+ .+-..|.. ...|-.||+|++... .+......+-++++.+++++....++.
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 2388999986532 222 12111111 123448999997421 112234556799999999999999999
Q ss_pred HHhC
Q 005747 297 KMAG 300 (679)
Q Consensus 297 ~~~~ 300 (679)
+.+.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8775
No 189
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.0015 Score=69.86 Aligned_cols=152 Identities=10% Similarity=0.115 Sum_probs=86.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
..+.|+|+.|+|||+|++++++..... ...++|++. ..+...+...+... ........+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 568899999999999999999987543 233566643 33444444444211 112222222 234
Q ss_pred eEEEEecCCCccc--h--hhcCCCCCC-CCCCcEEEEeecCc-c----h---hcccCCCcceEEecCCChHHHHHHHHHH
Q 005747 232 ILVILDNIWGNLD--L--KAAGIPHGD-DHRGCKVLLTARSL-D----T---LSTKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 232 ~LlVlDdv~~~~~--~--~~l~~~~~~-~~~gs~iivTtR~~-~----v---~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
-+|++||+..... + +.+...+.. ...|..||+||... . + +......+..+++.+++.++...++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5899999865321 1 111111110 11355688888642 1 1 1112344578999999999999999988
Q ss_pred hCCCCCCccHHHHHHHHHHHcCCC
Q 005747 299 AGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 299 ~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
+..... .--+++..-|++.+.|.
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCC
Confidence 753221 11135555566666643
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0015 Score=61.82 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=102.1
Q ss_pred cccccchHHHHHH---HHHHhcCC------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHH
Q 005747 129 YEAFESRMSILNE---ITDALKNG------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 129 ~~~~~gr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 199 (679)
..+++|.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+++++..++- | +.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t--- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----T--- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----H---
Confidence 3456788876554 66777643 47899999999999999999999987654 2 11111 1
Q ss_pred HHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--------------chhhcCCCCCC--CCCCcEEEE
Q 005747 200 REIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--------------DLKAAGIPHGD--DHRGCKVLL 263 (679)
Q Consensus 200 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~gs~iiv 263 (679)
+-|-+.+| +....+.+++++-.+--++++.+|.++... ....+...+.. .+.|-.-|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11222222 334566777777776779999999874320 11222222211 234444455
Q ss_pred eecCcchhcccCCC--cceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 264 TARSLDTLSTKMDS--QKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 264 TtR~~~v~~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
.|...+.+...... ...++..--+++|-..++..++....-+.+ .-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 55555554333333 346777778899999999888863322211 1144566666664
No 191
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.0013 Score=65.04 Aligned_cols=80 Identities=21% Similarity=0.184 Sum_probs=48.9
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHH
Q 005747 142 ITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARR 221 (679)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 221 (679)
..+|+.. ..-+.++|++|+|||.||..+.+..... ...+.|+.+ .++...+..... . .....
T Consensus 99 ~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~ 160 (269)
T PRK08181 99 GDSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E----LQLES 160 (269)
T ss_pred HHHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C----CcHHH
Confidence 3356543 3569999999999999999999876543 334566543 445555533211 0 11223
Q ss_pred HHHHHHcCCceEEEEecCCC
Q 005747 222 LHDRLKKEKRILVILDNIWG 241 (679)
Q Consensus 222 l~~~l~~~k~~LlVlDdv~~ 241 (679)
....+. +.=|||+||+..
T Consensus 161 ~l~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 161 AIAKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHHHh--cCCEEEEecccc
Confidence 344443 346999999854
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0076 Score=61.11 Aligned_cols=161 Identities=15% Similarity=0.143 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccC-------------------CCCCeEEEEEcC---CCcC
Q 005747 138 ILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAEND-------------------KLFDQVVFSEVS---ESQD 194 (679)
Q Consensus 138 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~v~---~~~~ 194 (679)
..+++.+.+..++ .+.+.++|+.|+||+++|+.++...--. .|.| ..|+... +...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCC
Confidence 3455666665554 4688999999999999999998864321 1112 2222211 1112
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS- 267 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~- 267 (679)
++ .+..+.+.+. .+++-++|+|++... .....+...+....+++.+|++|.+
T Consensus 90 vd---------------------qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 90 VE---------------------QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred HH---------------------HHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 22 2222222221 245568889998765 2344454444444556666666665
Q ss_pred cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 268 LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 268 ~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
..++.........+.+.+++++++.+.+.... .. ....++..++|.|+.+..+
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---Cc------hHHHHHHHcCCCHHHHHHH
Confidence 44555545556799999999999998886531 11 1356788999999876544
No 193
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.002 Score=69.88 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=87.8
Q ss_pred cchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 133 ESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 133 ~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
+|-++.+++|++.|. .-.-+++.+||++|||||+|++.+++-.... | +-+.+..-.|..+|--.--..+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccccc
Confidence 589999999999985 2345799999999999999999999987644 4 2334444444443311000000
Q ss_pred CCCCCccchhHHHHHHHHHHH--cCCceEEEEecCCCcc---------chhhcCCC-----CCC-----CCCCcEEE-Ee
Q 005747 207 GLKFDEESESGRARRLHDRLK--KEKRILVILDNIWGNL---------DLKAAGIP-----HGD-----DHRGCKVL-LT 264 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~---------~~~~l~~~-----~~~-----~~~gs~ii-vT 264 (679)
| + .-.++.+.+. +.++=+++||.++... .+-.+..| |.+ .--=|.|+ |+
T Consensus 401 G------a---mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 401 G------A---MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred c------c---CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 0 0 1123444443 2456799999886431 01011100 000 00113333 33
Q ss_pred ec-Ccc-hhcccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 265 AR-SLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 265 tR-~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
|- +-+ +-...+....++++.+.+++|-.++-+++.
T Consensus 472 TANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33 222 222334556799999999999998887764
No 194
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=0.00012 Score=67.24 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccC-CCCCeEEE
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEND-KLFDQVVF 186 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 186 (679)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999997654 45677775
No 195
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.0017 Score=61.78 Aligned_cols=35 Identities=40% Similarity=0.497 Sum_probs=28.5
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 141 EITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 141 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999875
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.021 Score=54.56 Aligned_cols=181 Identities=18% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcC-CCcCHHHHHHHHHHHhCCCCCcc--chhH-HHHHHH
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVS-ESQDIRKIQREIADKLGLKFDEE--SESG-RARRLH 223 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~--~~~~-~~~~l~ 223 (679)
.++.+++.++|.-|.|||.+++......... .++-|.++ ...+...+...|+..+..+.... .... ....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4556799999999999999999655554432 22223333 44567778888888887632211 1111 222334
Q ss_pred HHHHcCCc-eEEEEecCCCc--cchhhcCC--CCC-CCCCCcEEEEeecCcc-------hhcccCCCcce-EEecCCChH
Q 005747 224 DRLKKEKR-ILVILDNIWGN--LDLKAAGI--PHG-DDHRGCKVLLTARSLD-------TLSTKMDSQKN-FSVSFLKEE 289 (679)
Q Consensus 224 ~~l~~~k~-~LlVlDdv~~~--~~~~~l~~--~~~-~~~~gs~iivTtR~~~-------v~~~~~~~~~~-~~l~~L~~~ 289 (679)
.-..++++ ..+++|+..+. ..++.++. ... ....--+|+..-..+- +.......... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 44456777 89999998654 22333211 111 1111112333322110 00000011223 899999999
Q ss_pred HHHHHHHHHhCCCCCCc--cHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 290 EAWSLFKKMAGDYVEGN--ELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 290 e~~~Lf~~~~~~~~~~~--~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
+...++..+......+. --.+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999988876332222 22567788999999999999877654
No 197
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.008 Score=64.65 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=86.7
Q ss_pred CCCCCcccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcC
Q 005747 124 MPNKDYEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVS 190 (679)
Q Consensus 124 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 190 (679)
.|......+-|-++.+.+|-+.+. -...+-|..+|++|.|||++|+++++..... | +.+.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvk 500 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVK 500 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eecc
Confidence 344445566667776666665543 1356789999999999999999999987754 3 3333
Q ss_pred CCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-------------chhhcCCCCCCCCC
Q 005747 191 ESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-------------DLKAAGIPHGDDHR 257 (679)
Q Consensus 191 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~ 257 (679)
.+ +++.. +.. ..+..+..+.+.-++--+.+|.||.++... .+..+.........
T Consensus 501 gp----EL~sk--------~vG-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 501 GP----ELFSK--------YVG-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred CH----HHHHH--------hcC-chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 32 11110 011 112334445555444557888888764321 01112112211111
Q ss_pred C-cEEEEe-ecCcchhc-ccCC---CcceEEecCCChHHHHHHHHHHhCCC
Q 005747 258 G-CKVLLT-ARSLDTLS-TKMD---SQKNFSVSFLKEEEAWSLFKKMAGDY 302 (679)
Q Consensus 258 g-s~iivT-tR~~~v~~-~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~ 302 (679)
. ..+||. |...+... -.+. ....+.++.-+.+...++|+.++...
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 2 223332 22222221 1122 35677888888888889999998744
No 198
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.31 E-value=0.0023 Score=73.62 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=95.1
Q ss_pred CcccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 128 DYEAFESRMSILNEITDALKN-------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
...++.|.++.++++.+++.- ...+-+.++|++|+|||++|+.+++..... | +.++.+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~~--- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGPE--- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecHH---
Confidence 344578999999888877631 234678899999999999999999876432 2 2232211
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-------------chhhcCCCCCC-CCCCcE
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-------------DLKAAGIPHGD-DHRGCK 260 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~-~~~gs~ 260 (679)
+.. . ... ........+.+......+.+|++|++.... ....+...+.. ...+..
T Consensus 248 ---i~~----~----~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 248 ---IMS----K----YYG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ---Hhc----c----ccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 100 0 000 111233344444444567899999975321 01112111111 122334
Q ss_pred EEE-eecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH
Q 005747 261 VLL-TARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV 324 (679)
Q Consensus 261 iiv-TtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl 324 (679)
++| ||....-..... .-...+.+...+.++-.+++...........+ ....++++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 444 444322211111 12457888888888888888865543221111 224667788888653
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00021 Score=80.19 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=80.6
Q ss_pred CceEEEEeecccCC--CCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccc--hhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLL--SLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLP--VEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~l 515 (679)
++|+.|.+++-.+. .+..-..++++|+.||+++++++.+..++.|++|+.|.+.+=.+..-+ ..+.+|++|+.||+
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDI 227 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDI 227 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeec
Confidence 78999999887664 233345688999999999999999999999999999999887776433 35788999999999
Q ss_pred cCCcCccccChh------hhcCCcccceeecCCCCCC
Q 005747 516 RDCRELEIIPPN------VLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 516 ~~n~~~~~lp~~------~~~~l~~L~~L~l~~n~~~ 546 (679)
|...... .+.- .-..||+|+.||.++..+.
T Consensus 228 S~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 228 SRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 9854322 2211 1245899999999987663
No 200
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=1.3e-05 Score=76.04 Aligned_cols=101 Identities=29% Similarity=0.397 Sum_probs=79.2
Q ss_pred CCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccCh-hhhcCCcccceee
Q 005747 461 LLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPP-NVLSKLSHLEELY 539 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~-~~~~~l~~L~~L~ 539 (679)
.+.+.+.|+..+|.+.++....+++.|++|.|+-|.|+.+. .+..+++|+.|+|..|. +..+.. .-+.++++|+.|-
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 45678889999999999999999999999999999999986 38899999999999987 444442 2367899999999
Q ss_pred cCCCCCCcchhhhccccc-----ccccccCCCcEEE
Q 005747 540 MGPRSFDKWEVEVEGVKN-----ASLHELKHLISLE 570 (679)
Q Consensus 540 l~~n~~~~~~~~~~~~~~-----~~l~~l~~L~~L~ 570 (679)
|..|.= .+..+ ..+.-|++|+.||
T Consensus 95 L~ENPC-------c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPC-------CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCc-------ccccchhHHHHHHHHcccchhcc
Confidence 988754 22211 2345567777765
No 201
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.28 E-value=0.0043 Score=71.45 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=96.7
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...+.|.+..++.|.+.+. -...+-+.++|++|+|||++|+.+++..... | +.++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH---
Confidence 3456677777777766543 1234568899999999999999999986532 2 222211
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--------------chhhcCCCCCC--CCCCc
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--------------DLKAAGIPHGD--DHRGC 259 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~gs 259 (679)
++ +.. +..+ ....+..+.+......+.+|++|+++... ....+...+.. ...+-
T Consensus 522 -~l----~~~----~vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -EI----LSK----WVGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -HH----hhc----ccCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 110 1111 12234455555555678999999985321 01111111111 12334
Q ss_pred EEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 260 KVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 260 ~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
.||.||...+.+.... .....+.+...+.++-.++|+.........++ .-...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 4555665544432211 33568889999999999999876653322111 11345667777754
No 202
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.011 Score=60.61 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccC--------------------CCCCeEEEEEcCCCcCHH
Q 005747 138 ILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAEND--------------------KLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 138 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v~~~~~~~ 196 (679)
.-+++.+.+..++ .+.+.+.|+.|+||+++|..++...--. .|-|. .++......
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~--- 85 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGK--- 85 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccc---
Confidence 3456666666554 5678899999999999999988875321 11121 222111000
Q ss_pred HHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecC-cc
Q 005747 197 KIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARS-LD 269 (679)
Q Consensus 197 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~-~~ 269 (679)
..-..+.+..+.+.+. .+++-++|+|+++... .-..+...+.....++.+|++|.+ ..
T Consensus 86 ---------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 86 ---------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred ---------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 0011122333333332 3566789999986652 334444444444556777777765 44
Q ss_pred hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 270 TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 270 v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
++.........+.+.+++++++.+.+.+..+ .+ .+.+..++..++|.|..+.
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 4444344556889999999999887765421 11 2346678999999996543
No 203
>PRK08116 hypothetical protein; Validated
Probab=97.28 E-value=0.00067 Score=67.49 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
..+.++|..|+|||.||.++++....+ ...++|+++ .+++..+........ ......+.+.+.. -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~-~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSG-----KEDENEIIRSLVN-A- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccc-----cccHHHHHHHhcC-C-
Confidence 458899999999999999999997644 344666653 345555554443211 1112234444442 2
Q ss_pred eEEEEecCCC--ccchhh--cCCCCCC-CCCCcEEEEeecC
Q 005747 232 ILVILDNIWG--NLDLKA--AGIPHGD-DHRGCKVLLTARS 267 (679)
Q Consensus 232 ~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~iivTtR~ 267 (679)
=||||||+.. ..+|.. +...+.. ...|..+|+||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3899999943 334432 2111111 1245568888864
No 204
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.26 E-value=0.014 Score=60.36 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHHHhccCCCCCeEEEEEcCCC---cCHHHHHHHHHHHhCCCC
Q 005747 135 RMSILNEITDALKNGDVNTLGIYGIGGIGKTTLA-KEVARRAENDKLFDQVVFSEVSES---QDIRKIQREIADKLGLKF 210 (679)
Q Consensus 135 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~l~~~i~~~l~~~~ 210 (679)
|.+..++|..||.+..-..|.|.|+-|.||+.|+ .++..+.+. +.+++|.+- .+-..+...++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888889999999999999999 777665432 777777643 234556666666665320
Q ss_pred -----------------------C--ccchhHHHHHHHHH----HH-------------------------cCCceEEEE
Q 005747 211 -----------------------D--EESESGRARRLHDR----LK-------------------------KEKRILVIL 236 (679)
Q Consensus 211 -----------------------~--~~~~~~~~~~l~~~----l~-------------------------~~k~~LlVl 236 (679)
. .++.+..+..+.+. |+ ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 01111111111110 00 012568999
Q ss_pred ecCCCc-----------cchhhcCCCCCCCCCCcEEEEeecCcchh---cccC--CCcceEEecCCChHHHHHHHHHHhC
Q 005747 237 DNIWGN-----------LDLKAAGIPHGDDHRGCKVLLTARSLDTL---STKM--DSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 237 Ddv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~---~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
||.... .+|..... ..+=..||++|-+.... ...+ ...+.+.+...+.+.|.++......
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 997543 13443211 12334688888764433 1122 3456889999999999999988875
Q ss_pred CCCCC-------------------ccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCCh
Q 005747 301 DYVEG-------------------NELKEVARDVAKECAGLPVAIVTVATALRDNNSL 339 (679)
Q Consensus 301 ~~~~~-------------------~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~ 339 (679)
..... .....-....++.+||=-.-+..+++.++...++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 32110 1223344567788888888888888888774443
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.25 E-value=0.0023 Score=65.41 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=66.7
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCe-EEEEEcCC-CcCHHHHHHHHHHHhCCCCCccch
Q 005747 139 LNEITDALKN-GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQ-VVFSEVSE-SQDIRKIQREIADKLGLKFDEESE 215 (679)
Q Consensus 139 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~ 215 (679)
..++++.+.. +.-+-+.|+|..|+|||||++.+++..... +-+. ++|+.+.+ ..++.++.+.+...+.......+.
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3446776652 333567999999999999999999876543 2233 46666654 457888999888877654332222
Q ss_pred hH------HHHHHHHHH-HcCCceEEEEecCCC
Q 005747 216 SG------RARRLHDRL-KKEKRILVILDNIWG 241 (679)
Q Consensus 216 ~~------~~~~l~~~l-~~~k~~LlVlDdv~~ 241 (679)
.. .+..+.+++ .+|++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 22 122333333 358999999999853
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.017 Score=59.27 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=59.5
Q ss_pred CCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-cchhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCC
Q 005747 229 EKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS-LDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEG 305 (679)
Q Consensus 229 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 305 (679)
+++-++|+|+++.. .....+...+....+++.+|++|.+ ..+..........+.+.+++.++..+.+.+. + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~--~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G--V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C--C--
Confidence 45568889998765 3455555555555566766666655 4444444445679999999999999888764 1 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHH
Q 005747 306 NELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 306 ~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
+. ...++..++|.|..+..+
T Consensus 206 ~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755433
No 207
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.013 Score=62.29 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=88.8
Q ss_pred cccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH
Q 005747 129 YEAFESRMSILNEITDALK---N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 196 (679)
...+-|-++.+.++.+++. . ...+=|.+||++|.|||.||++++....+- | +.++-+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 4567788888888877664 1 135678899999999999999999998764 3 333322
Q ss_pred HHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc---ch----------hhcC---CCCC-CCCCCc
Q 005747 197 KIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL---DL----------KAAG---IPHG-DDHRGC 259 (679)
Q Consensus 197 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~----------~~l~---~~~~-~~~~gs 259 (679)
+|+.... . ..+..+..+++.-...-++++++|+++-.. +| .++. ..+. ....|-
T Consensus 258 ----eivSGvS----G-ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVS----G-ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccC----c-ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 2222221 1 123455666766666789999999985321 11 1111 1111 111232
Q ss_pred EEEE--eecCcchh----cccCCCcceEEecCCChHHHHHHHHHHhC
Q 005747 260 KVLL--TARSLDTL----STKMDSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 260 ~iiv--TtR~~~v~----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
.|+| +|...+.+ .+.-...+.|.+.--++..-.++++..+.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 2333 33322322 22223356778887787777777777665
No 208
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00016 Score=68.65 Aligned_cols=125 Identities=24% Similarity=0.276 Sum_probs=82.3
Q ss_pred EeehhHHHHHHHHhhcccceeeecCCceEEEEeecccCCCCCccccCCCCCCEEEcCCCC--CCC-c-hhhcCCCCCcEE
Q 005747 415 SMHDVVRDVAISIASTEQNVFSATEEQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCK--LLD-I-TVIRDLKKLEVL 490 (679)
Q Consensus 415 ~mHdlv~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~--l~~-~-~~~~~l~~L~~L 490 (679)
.+|++..+-+++....-.... .....++.|++.+..++++. .|..+++|+.|.++.|. +.. + .....+++|++|
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~-d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l 96 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLT-DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL 96 (260)
T ss_pred hhhhhhcchhhhcCCCccccc-ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence 445555554444432221111 11156778888888877654 46688999999999994 443 2 334566999999
Q ss_pred Ecccccccccc--hhhhcCcCCCEEeccCCcCccccC---hhhhcCCcccceeecCC
Q 005747 491 CLRGSDIKRLP--VEVGELTLLRLLDLRDCRELEIIP---PNVLSKLSHLEELYMGP 542 (679)
Q Consensus 491 ~L~~n~i~~lp--~~i~~l~~L~~L~l~~n~~~~~lp---~~~~~~l~~L~~L~l~~ 542 (679)
++++|.|+.+. ..+..+.+|..|++.+|.... +. ..+|.-+++|.+|+-..
T Consensus 97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred eecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 99999887432 135788889999999987443 22 23466788888887544
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.14 E-value=0.012 Score=58.53 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHH
Q 005747 136 MSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 136 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 199 (679)
.+..+++..++..+ +-|.+.|++|+|||++|+.+++... ....+++++...+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 34455666665543 3567899999999999999997542 124566666655555543
No 210
>PRK04132 replication factor C small subunit; Provisional
Probab=97.13 E-value=0.01 Score=67.59 Aligned_cols=157 Identities=12% Similarity=0.024 Sum_probs=95.6
Q ss_pred CCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEec
Q 005747 159 IGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDN 238 (679)
Q Consensus 159 ~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDd 238 (679)
|.++||||+|..++++.-..+.-..++-++.++......+...+-+....... ...+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~---------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI---------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc---------------CCCCCEEEEEEC
Confidence 78999999999999986332211346778888766665443333221111100 012457999999
Q ss_pred CCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHH
Q 005747 239 IWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDV 315 (679)
Q Consensus 239 v~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I 315 (679)
++... ....+...+......+++|++|.+.. +..........+++.++++++....+...+......- -++....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHH
Confidence 98763 44444444433344667777666533 3233234467999999999999888877664321111 14577889
Q ss_pred HHHcCCChHHHHHHHH
Q 005747 316 AKECAGLPVAIVTVAT 331 (679)
Q Consensus 316 ~~~~~glPlai~~~~~ 331 (679)
++.|+|.+-.+..+-.
T Consensus 718 a~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 718 LYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999998755444333
No 211
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0019 Score=59.69 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccC-CCCCeEEE
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEND-KLFDQVVF 186 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 186 (679)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998775432 13455555
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.13 E-value=0.0029 Score=59.64 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCc----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDE----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 225 (679)
++||.++|+.|+||||.+..++.....+ -..+..++..... ...+-++..++.++.+... .+....+.+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999888888876654 4457777765432 4566678888999876422 2233334344444
Q ss_pred HHcCCceEEEEecC
Q 005747 226 LKKEKRILVILDNI 239 (679)
Q Consensus 226 l~~~k~~LlVlDdv 239 (679)
...++.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44333347777865
No 213
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.09 E-value=0.0036 Score=68.77 Aligned_cols=49 Identities=27% Similarity=0.378 Sum_probs=40.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.....++|.+..++.+...+......-+.|+|..|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445788999999999887766555667899999999999999998753
No 214
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.09 E-value=0.0052 Score=71.02 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 131 AFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.++|.++.+++|.+++. ....+++.++|++|+|||++|+.+++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45688888998888764 223458999999999999999999998753
No 215
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.08 E-value=0.027 Score=61.20 Aligned_cols=200 Identities=19% Similarity=0.141 Sum_probs=119.7
Q ss_pred cccchHHHHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHHHhc------cCCCCCeEEEEEcCCCcCHHHHH
Q 005747 131 AFESRMSILNEITDALK----N-GDVNTLGIYGIGGIGKTTLAKEVARRAE------NDKLFDQVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~v~~~~~~~~l~ 199 (679)
.+-+|+.+..+|-.++. + +..+.+.|.|.+|.|||..+..|.+... .-..|+ .+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 45689999999988875 3 4456999999999999999999999644 112343 3455666666799999
Q ss_pred HHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCccc--hhhcCCCCCC-CCCCcEEEEeecC-----
Q 005747 200 REIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNLD--LKAAGIPHGD-DHRGCKVLLTARS----- 267 (679)
Q Consensus 200 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~iivTtR~----- 267 (679)
..|...+..... .....++.+..++. ..+..++++|+++..-. -+-+...|.| ..++||++|.+=.
T Consensus 476 ~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 476 EKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 999999865422 22333444444443 24568889998754311 1112223333 3467776665432
Q ss_pred -cchhccc---CCCcceEEecCCChHHHHHHHHHHhCCC--CCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 005747 268 -LDTLSTK---MDSQKNFSVSFLKEEEAWSLFKKMAGDY--VEGNELKEVARDVAKECAGLPVAIVTVATAL 333 (679)
Q Consensus 268 -~~v~~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~I~~~~~glPlai~~~~~~L 333 (679)
+..+... .-....+...|.+.++-.++...+..+. ......+-++++|+...|-.-.|+.+.-++.
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1111100 0112466777888888888777766532 1222334455666665555555555444443
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.17 Score=52.51 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=82.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
|=-.++|++|.|||+++.++++... |+.. =+..+...+-.+ ++.+ ... ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d-Lr~L--------------------L~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD-LRHL--------------------LLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH-HHHH--------------------HHh--CCCC
Confidence 4567999999999999999999875 4332 122222111111 2222 111 1335
Q ss_pred eEEEEecCCCccch--------------------hhcCCCC---CCCCCCcEEEE-eecCcchhccc----CCCcceEEe
Q 005747 232 ILVILDNIWGNLDL--------------------KAAGIPH---GDDHRGCKVLL-TARSLDTLSTK----MDSQKNFSV 283 (679)
Q Consensus 232 ~LlVlDdv~~~~~~--------------------~~l~~~~---~~~~~gs~iiv-TtR~~~v~~~~----~~~~~~~~l 283 (679)
-+||+.|++-..+. ..+...+ .+.+.+=|||| ||...+-+... -....++.|
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 67777776533110 0011111 11122235555 66555544221 223458889
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNN 337 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~ 337 (679)
.--+.+....||..+.+...+. .+..+|.+...|.-++-..+++.|-.++
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 9999999999999998754322 4455555555555444445555554434
No 217
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.07 E-value=0.0025 Score=61.19 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=38.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
-+++.|+|.+|+|||+++.+++...... ...++|++... ++..++.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH
Confidence 4789999999999999999998876533 46789999976 666665543
No 218
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.07 E-value=0.001 Score=64.00 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
.++|+|.+|.||||++..+...... .|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 5779999999999999999987664 4877777654
No 219
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0055 Score=65.58 Aligned_cols=189 Identities=16% Similarity=0.193 Sum_probs=113.1
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
....+++|.+.....|...+..+. .+-....|+-|+||||+|+-++...--.+. ....++..-..-+.|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 345667899999999999988655 456778999999999999999887432210 000111111111222111
Q ss_pred hCCCC-----CccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-cchhcc
Q 005747 206 LGLKF-----DEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS-LDTLST 273 (679)
Q Consensus 206 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~ 273 (679)
-..+. -.....+....+.+... .++.-+.|+|.|.-. ..|..+...+......-..|+.|++ ..+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 00000 00112234445555543 356668999998544 4577776666555556666666665 344344
Q ss_pred cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 274 KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 274 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
.......|.++.++.++-...+...+....-..+ ++...-|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 4556789999999999988888887753322211 345555666666644
No 220
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.05 E-value=0.0065 Score=69.60 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=85.6
Q ss_pred ccccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 130 EAFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
...+|.++.+++|++++. .....++.++|++|+||||+|+.++...... | +-+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 346799999999998886 2345689999999999999999999876432 3 2233444334332221110
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHc--CCceEEEEecCCCccc------hhhcCCCCC---------------CCCCCcE
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKK--EKRILVILDNIWGNLD------LKAAGIPHG---------------DDHRGCK 260 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~------~~~l~~~~~---------------~~~~gs~ 260 (679)
...|. ..+ .+.+.+.. ..+-+++||.++.... ...+...+. -.-.+.-
T Consensus 397 ~~~g~------~~G---~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIGS------MPG---KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCCC------CCc---HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 01110 011 12222221 1345788999854311 111111111 0113334
Q ss_pred EEEeecCcchhcccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 261 VLLTARSLDTLSTKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 261 iivTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
+|.|+.+..+-........++++.+++.+|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445554433322223334688999999999988877654
No 221
>PRK12377 putative replication protein; Provisional
Probab=97.00 E-value=0.004 Score=60.84 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=48.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
+...+.++|..|+|||+||.++++..... ...+.|+++. ++...+-...... .....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--
Confidence 34679999999999999999999987644 3345666554 3444444333110 01123444443
Q ss_pred CceEEEEecCCC
Q 005747 230 KRILVILDNIWG 241 (679)
Q Consensus 230 k~~LlVlDdv~~ 241 (679)
+-=|||+||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 457999999943
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0072 Score=62.50 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=83.5
Q ss_pred ccchHHHHHHHHHHhc-CCCcc-EEEEEcCCCCcHHHHHHHHHHHhccCC-------------------CCCeEEEEEcC
Q 005747 132 FESRMSILNEITDALK-NGDVN-TLGIYGIGGIGKTTLAKEVARRAENDK-------------------LFDQVVFSEVS 190 (679)
Q Consensus 132 ~~gr~~~~~~l~~~L~-~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v~ 190 (679)
++|-+....++..+.. .++.+ .+.++|+.|+||||+|..+++...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777776 33344 599999999999999999999865322 12345555555
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc--hhhcCCCCCCCCCCcEEEEee
Q 005747 191 ESQD---IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD--LKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 191 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivTt 265 (679)
+... ..+..+++.+....... .++.-++++|+++.... -..+..........+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 5544 34444555544432211 25678999999876532 333333333345567788777
Q ss_pred cC-cchhcccCCCcceEEecCC
Q 005747 266 RS-LDTLSTKMDSQKNFSVSFL 286 (679)
Q Consensus 266 R~-~~v~~~~~~~~~~~~l~~L 286 (679)
.. ..+..........+++.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred CChhhccchhhhcceeeecCCc
Confidence 74 3333333334456677663
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.0025 Score=64.49 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 134 SRMSILNEITDALKN----GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 134 gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
+|....+...+++.+ ...+-+.++|..|+|||.||.++++....+ -..+.|++++ ++...+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC
Confidence 555555556666652 245679999999999999999999997643 2335666554 4555554443211
Q ss_pred CCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhh--cCCCC-CCC-CCCcEEEEeec
Q 005747 210 FDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKA--AGIPH-GDD-HRGCKVLLTAR 266 (679)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~~~-~~~-~~gs~iivTtR 266 (679)
......+.+. +-=||||||+... ..|.. +...+ ... ..+-.+|+||.
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1223344443 4569999998543 34543 22221 111 13445677775
No 224
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0038 Score=65.09 Aligned_cols=92 Identities=28% Similarity=0.321 Sum_probs=60.6
Q ss_pred ccccchH---HHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHH
Q 005747 130 EAFESRM---SILNEITDALKNGD---------VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRK 197 (679)
Q Consensus 130 ~~~~gr~---~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 197 (679)
.++.|-+ .++++|+++|.+.. ++=|.++|++|.|||-||++|+-...+- | |......|+..-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm~ 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEMF 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhhh
Confidence 3444544 56788888887432 4678999999999999999999876654 2 333333333221
Q ss_pred HHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCC
Q 005747 198 IQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWG 241 (679)
Q Consensus 198 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 241 (679)
+ | -...++..+...-+..-+++|.+|.++.
T Consensus 378 V--------G------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 378 V--------G------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred h--------c------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 0 1 1234555666666667799999998754
No 225
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.91 E-value=0.0039 Score=61.10 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc----------cch-
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQREIADKLGLKFDE----------ESE- 215 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------~~~- 215 (679)
-.++.|+|.+|+|||++|.+++-...... ....++|++....++..++.. +++..+..... .+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHH
Confidence 46899999999999999999986533221 135799999988877665543 34444332110 011
Q ss_pred --hHHHHHHHHHHHcC-CceEEEEecCC
Q 005747 216 --SGRARRLHDRLKKE-KRILVILDNIW 240 (679)
Q Consensus 216 --~~~~~~l~~~l~~~-k~~LlVlDdv~ 240 (679)
......+.+.+.+. +.-+||+|.+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 11223344444444 66788888874
No 226
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.90 E-value=0.0031 Score=73.03 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=61.4
Q ss_pred ccccchHHHHHHHHHHhc-------C--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 130 EAFESRMSILNEITDALK-------N--GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.++...-.. ....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 356899999999888874 1 123478999999999999999998876322 1223333433321111
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.+.+-+|.+.... ..+....+.+.+.+...-+|+||++...
T Consensus 640 ~~~~l~g~~~gyv-g~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYV-GYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCcc-cccccchHHHHHHhCCCcEEEEechhhc
Confidence 1112223221111 1111123445555555679999999654
No 227
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.88 E-value=0.0053 Score=70.52 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 131 AFESRMSILNEITDALKN-------G--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.++|.++.++.+.+.+.. . ...++.++|+.|+|||++|+.++.... ...+.++.+.-.+.. .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 457888888888877651 1 234688999999999999999998763 234555655432211 1
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
+.+.+|.+... ...+....+.+.+.....-+++||+++..
T Consensus 526 ~~~lig~~~gy-vg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGY-VGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCC-cccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 12223322111 11112233445555444569999999755
No 228
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.85 E-value=0.043 Score=52.86 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=114.7
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCC----------c---
Q 005747 131 AFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSES----------Q--- 193 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~----------~--- 193 (679)
.+.++++....+......++.+-..++|++|.||-|.+..+.+..-.. -.-+...|.+.+.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 355777777777776666778888999999999999988888774321 12234445443332 1
Q ss_pred --------CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCce-EEEEecCCCc--cchhhcCCCCCCCCCCcEEE
Q 005747 194 --------DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRI-LVILDNIWGN--LDLKAAGIPHGDDHRGCKVL 262 (679)
Q Consensus 194 --------~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 262 (679)
.-+-+.++|+++++...+-+. ...+.| ++|+-.+++. +.-..+......-...+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 112234444444332211100 012344 4555544332 11112221111123456777
Q ss_pred EeecCcchh-cccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcC-----
Q 005747 263 LTARSLDTL-STKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDN----- 336 (679)
Q Consensus 263 vTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~----- 336 (679)
+...+-+.. .......-.+.+...+++|....+......+.-.-. .+++.+|+++++|.---...+-..++-+
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 754432211 111223347889999999999999888763322111 6899999999999654444444443321
Q ss_pred -----CChhHHHHHHHHhc
Q 005747 337 -----NSLFDWKDALEQLR 350 (679)
Q Consensus 337 -----~~~~~w~~~l~~l~ 350 (679)
-...+|+-++.+..
T Consensus 241 a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccCCCCCCccHHHHHHHHH
Confidence 13568998777653
No 229
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.0017 Score=66.15 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 131 AFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.++|.++.++++++++. ....+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999986 234689999999999999999999998754
No 230
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.82 E-value=0.0093 Score=58.92 Aligned_cols=89 Identities=26% Similarity=0.331 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc---------c-chh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE---------E-SES 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---------~-~~~ 216 (679)
..+.=|+|.+|+|||+|+.+++-..... ..-..++|++....|+.+++. +|++..+..... . +..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3588999999999999999887654321 123569999999999998875 467766543210 0 111
Q ss_pred ---HHHHHHHHHHHcCCceEEEEecCC
Q 005747 217 ---GRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 217 ---~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
..+..+...+.+++--|||+|.+.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 112233333334555688888873
No 231
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.82 E-value=0.0057 Score=71.40 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=62.3
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 130 EAFESRMSILNEITDALKN-------G--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+....... -...+.++++.-.....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH--
Confidence 3578999999999888752 1 23578899999999999999999876432 123455555543221111
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.+.+|.+.... ..+....+.+.+......+|+||++...
T Consensus 641 --~~l~g~~~g~~-g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGYV-GYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCcc-CcccccHHHHHHHcCCCcEEEEeccccC
Confidence 12223221100 1111123444444334459999999755
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.79 E-value=0.0011 Score=57.25 Aligned_cols=24 Identities=50% Similarity=0.583 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 233
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.79 E-value=0.0056 Score=71.16 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 130 EAFESRMSILNEITDALKN-------G--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..... -...+.++++.-... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h---
Confidence 3567999988888887751 1 12478899999999999999999875322 123445555432211 1
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.+.+-+|.+.... ..+....+.+.+.....-+|+||++...
T Consensus 642 ~~~~LiG~~pgy~-g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYV-GYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCccc-ccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 1222233322111 1111223444444333469999999754
No 234
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0073 Score=65.26 Aligned_cols=151 Identities=17% Similarity=0.121 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc--CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ--DIRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
..-|.|.|..|+|||+||+++++... ++..-.+.+|+++.-. ..+.+++.+-..+ .+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~- 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW- 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh-
Confidence 35789999999999999999999887 4455567777776532 3444444332222 11222
Q ss_pred CCceEEEEecCCCc--------cchhh-----------cCCCCCCCCCCcE--EEEeecCcchhcccC----CCcceEEe
Q 005747 229 EKRILVILDNIWGN--------LDLKA-----------AGIPHGDDHRGCK--VLLTARSLDTLSTKM----DSQKNFSV 283 (679)
Q Consensus 229 ~k~~LlVlDdv~~~--------~~~~~-----------l~~~~~~~~~gs~--iivTtR~~~v~~~~~----~~~~~~~l 283 (679)
..+-+|||||++-. .+|.. +...+ ...+.+ +|-|.....-..... ....+..+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 46899999998522 12221 11111 123344 444444322221111 22346788
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
..+...+-.++++........... .+...-+..+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCc
Confidence 888888888877766543221111 22222377888885
No 235
>PTZ00494 tuzin-like protein; Provisional
Probab=96.77 E-value=0.6 Score=48.59 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCcccccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALK---NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.....++.|+.+-..+.+.|. ...++++.+.|.-|.||++|.+....+...- .++|++.... +-++.|.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~E---DtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGTE---DTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCCc---chHHHHH
Confidence 445667888887666666665 4568999999999999999999998887654 6788887764 4567888
Q ss_pred HHhCCCCCccchhHHHHHHHHHH------HcCCceEEEEecCCCccchhhc---CCCCCCCCCCcEEEEeecCcch--hc
Q 005747 204 DKLGLKFDEESESGRARRLHDRL------KKEKRILVILDNIWGNLDLKAA---GIPHGDDHRGCKVLLTARSLDT--LS 272 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l------~~~k~~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~iivTtR~~~v--~~ 272 (679)
+.+|.+..+.- -+.++.+-+.. ..|+.=+||+-= .+-..+..+ ...+.....-|.|++----+.. +.
T Consensus 440 KALgV~nve~C-GDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 440 RALGVSNVEVC-GDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHhCCCChhhh-ccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 88887653321 11222222221 135555666531 111111111 0111122334555553222111 11
Q ss_pred ccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 273 TKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 273 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
.....-..|.+.+++.++|.++..+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 123334578899999999988776643
No 236
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.76 E-value=0.0077 Score=61.19 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc----------chh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE----------SES 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~----------~~~ 216 (679)
.+++-|+|.+|+|||+++.+++-..... ..-..++||+....|+.+++.+ +++.++...... +..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 4688999999999999999877543211 1124699999999999988754 677776542210 111
Q ss_pred ---HHHHHHHHHHHcCCceEEEEecCC
Q 005747 217 ---GRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 217 ---~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
+.+..+...+..++--|||+|.+.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 122233333444455578888874
No 237
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.75 E-value=0.0042 Score=67.36 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
-++..++|++|+||||||+.++++..- .++=|+.|+..+...+-..|...+.....-. ..++
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------adsr 387 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADSR 387 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCCC
Confidence 578999999999999999999987653 3778899999888888777766553221100 0257
Q ss_pred ceEEEEecCCCcc
Q 005747 231 RILVILDNIWGNL 243 (679)
Q Consensus 231 ~~LlVlDdv~~~~ 243 (679)
+.-+|+|.++...
T Consensus 388 P~CLViDEIDGa~ 400 (877)
T KOG1969|consen 388 PVCLVIDEIDGAP 400 (877)
T ss_pred cceEEEecccCCc
Confidence 8899999987763
No 238
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.048 Score=58.22 Aligned_cols=151 Identities=22% Similarity=0.343 Sum_probs=92.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
..=|.+||++|.|||-||++|+|..... |+.|..+ +++.. .+| ..+..+..++++-+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNk---YVG------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNK---YVG------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHH---Hhh------hHHHHHHHHHHHhhcCC
Confidence 4568899999999999999999998765 4555443 12211 111 12344566777777788
Q ss_pred ceEEEEecCCCcc-------------chhhcCCCCCC--CCCCcEEEEeecCcchhcccC----CCcceEEecCCChHHH
Q 005747 231 RILVILDNIWGNL-------------DLKAAGIPHGD--DHRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEA 291 (679)
Q Consensus 231 ~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~ 291 (679)
+++|.||.++... ...++...+.. ...|--||-.|...++....+ .-....-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999985431 12222222221 224445565665555543222 2245777888889999
Q ss_pred HHHHHHHhCCC--C--CCccHHHHHHHHHHHcCCCh
Q 005747 292 WSLFKKMAGDY--V--EGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 292 ~~Lf~~~~~~~--~--~~~~~~~~~~~I~~~~~glP 323 (679)
..+++...... . .+.++.++++. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999888732 2 23455666553 4666654
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0092 Score=58.79 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=50.9
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHH
Q 005747 142 ITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARR 221 (679)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 221 (679)
+.+++. +..-+.++|.+|+|||.||.++.+... +. --.+.|+++ .++..++...... .....+
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~~------~el~~~Lk~~~~~-------~~~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFITA------PDLLSKLKAAFDE-------GRLEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEEH------HHHHHHHHHHHhc-------CchHHH
Confidence 334443 566799999999999999999999987 32 234556544 4455555544432 111223
Q ss_pred HHHHHHcCCceEEEEecCCC
Q 005747 222 LHDRLKKEKRILVILDNIWG 241 (679)
Q Consensus 222 l~~~l~~~k~~LlVlDdv~~ 241 (679)
+...+. +-=||||||+-.
T Consensus 161 l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 161 LLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHhh--cCCEEEEecccC
Confidence 333343 345999999854
No 240
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.014 Score=56.89 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccc
Q 005747 137 SILNEITDALKN--GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEES 214 (679)
Q Consensus 137 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~ 214 (679)
..+..+.++..+ .+...+.++|.+|+|||+||.++++..... -..++++++ .++...+-..... ..
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~--~~-- 150 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN--SE-- 150 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh--cc--
Confidence 345555555442 234578999999999999999999987643 245666643 4455444433321 01
Q ss_pred hhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 215 ESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 215 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.....+.+.+. +.=+||+||+...
T Consensus 151 --~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 --TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223444454 3458899998543
No 241
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.72 E-value=0.0071 Score=70.34 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=61.0
Q ss_pred ccccchHHHHHHHHHHhc-------CC--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 130 EAFESRMSILNEITDALK-------NG--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
..++|.+..++.+...+. +. ....+.++|+.|+|||+||+.+++..-.. -...+.++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 457899999999988775 11 13467799999999999999999875322 123444555443222111
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.+.+|.+.. ....+....+.+.+.....-+++||++...
T Consensus 585 --~~l~g~~~g-yvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPG-YVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCc-ccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 112232211 101111223445555433458999999755
No 242
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0076 Score=60.95 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc------cchhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE------ESESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 224 (679)
-+++-|+|++|+||||||.++....... -..++||+....++.. .+++++...+. ...++....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4699999999999999999988776433 3557899887766653 35566654211 122222333333
Q ss_pred HHHcCCceEEEEecCCC
Q 005747 225 RLKKEKRILVILDNIWG 241 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~~ 241 (679)
.+..+..-+||+|-+..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 33445667999998753
No 243
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.046 Score=57.31 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
....+.+.|++|+|||+||..++.... |..+--++..+.. |. .+......+..+.+.--+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi-------------G~--sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI-------------GL--SESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc-------------Cc--cHHHHHHHHHHHHHHhhcC
Confidence 355678999999999999999988754 6554333222111 11 0111111222232222234
Q ss_pred CceEEEEecCCCccchhhcCCCC---------------CCCCCCcEEEEeecCcchhcccCC----CcceEEecCCCh-H
Q 005747 230 KRILVILDNIWGNLDLKAAGIPH---------------GDDHRGCKVLLTARSLDTLSTKMD----SQKNFSVSFLKE-E 289 (679)
Q Consensus 230 k~~LlVlDdv~~~~~~~~l~~~~---------------~~~~~gs~iivTtR~~~v~~~~~~----~~~~~~l~~L~~-~ 289 (679)
.--.||+||+....+|..++..| |+.++.--|+-||....++. .|+ ....|.+..++. +
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchH
Confidence 45789999998777776655433 22233333444665566653 232 235788888887 6
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 005747 290 EAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATAL 333 (679)
Q Consensus 290 e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L 333 (679)
+..+.+...- ...+...+.++.+...+| +-..|+.+-.++
T Consensus 677 ~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 677 QLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred HHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7776666532 111233445566666666 223344444443
No 244
>PRK06526 transposase; Provisional
Probab=96.66 E-value=0.0021 Score=63.18 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=43.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
...+.++|++|+|||+||..+.......+ + .+.|+ +..++...+..... . .........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~----~~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A----GRLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c----CcHHHHHHHhc--c
Confidence 45689999999999999999988764331 2 23443 33444444433211 0 11112223332 3
Q ss_pred ceEEEEecCCCc
Q 005747 231 RILVILDNIWGN 242 (679)
Q Consensus 231 ~~LlVlDdv~~~ 242 (679)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 468999998643
No 245
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.042 Score=53.33 Aligned_cols=91 Identities=23% Similarity=0.331 Sum_probs=58.2
Q ss_pred cccchHHHHHHHHHHhc----------CC--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH
Q 005747 131 AFESRMSILNEITDALK----------NG--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI 198 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 198 (679)
.+.|-+..++.|.+..- .. .-+-|.++|++|.||+.||++|+...... |++||... +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehHH----H
Confidence 34566666666665542 11 25679999999999999999999876532 44455431 1
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCC
Q 005747 199 QREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWG 241 (679)
Q Consensus 199 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 241 (679)
. -..+| .....+..+.+--+..|+-+|.+|.++.
T Consensus 203 v---SKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 203 V---SKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred H---HHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1 11222 1233455666666678999999999863
No 246
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.013 Score=63.43 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=88.5
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHH
Q 005747 131 AFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIAD 204 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 204 (679)
+-+|.++.+++|++++. ..+-+++..+|++|||||++|+.++.-...+ | +-++|..-.|..+|--.--.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhccccee
Confidence 34699999999999985 3356899999999999999999999887543 3 34556665555543211000
Q ss_pred HhCCCCCccchhHHHHHHHHHHHc--CCceEEEEecCCCcc---------chhhcCCC-----C----CC-CCCCcEEEE
Q 005747 205 KLGLKFDEESESGRARRLHDRLKK--EKRILVILDNIWGNL---------DLKAAGIP-----H----GD-DHRGCKVLL 263 (679)
Q Consensus 205 ~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~---------~~~~l~~~-----~----~~-~~~gs~iiv 263 (679)
.+| . .-.++.+-|++ -.+=|+.+|.|+... .+-.+..| | .+ .-.=|+|+.
T Consensus 487 YVG------A---MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 487 YVG------A---MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eec------c---CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 000 0 11234444432 345688889885431 11111110 0 00 012355554
Q ss_pred eecCcchh---cccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 264 TARSLDTL---STKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 264 TtR~~~v~---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
...-..+. ........+|++.+...+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33321221 1122345688999999999888776654
No 247
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.0073 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
-..+.++|++|.||||+.+.+|...+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 357899999999999999999998764
No 248
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.61 E-value=0.022 Score=64.25 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=79.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKR 231 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 231 (679)
+-|.++|++|.|||++|+.++...... | +.++.++ +... ..+ ........+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~~---~~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVEM---FVG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHHh---hhc------ccHHHHHHHHHHHHhcCC
Confidence 458999999999999999998876542 2 2222221 1110 001 011223333444444568
Q ss_pred eEEEEecCCCcc------------c----hhhcCCCCCC--CCCCcEEEEeecCcchhcccC----CCcceEEecCCChH
Q 005747 232 ILVILDNIWGNL------------D----LKAAGIPHGD--DHRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEE 289 (679)
Q Consensus 232 ~LlVlDdv~~~~------------~----~~~l~~~~~~--~~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~ 289 (679)
.+|++|+++... . +..+...+.. ...+.-+|.||...+.+.... .....+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999985431 0 1111111111 123444555776655442221 23567888888888
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 290 EAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 290 e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
+-.++++.........++. ....+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCC
Confidence 8888888877543221111 123456666663
No 249
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.60 E-value=0.0093 Score=60.36 Aligned_cols=83 Identities=24% Similarity=0.293 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----cc-chhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFD-----EE-SESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~-----~~-~~~~~~~~l~~ 224 (679)
-+++-|+|++|+||||||.+++...... -..++||+....++.. .+++++...+ .. +..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4688999999999999999988765433 3568899988777653 3455554321 11 12222223322
Q ss_pred HHHcCCceEEEEecCC
Q 005747 225 RLKKEKRILVILDNIW 240 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~ 240 (679)
.+..+..-+||+|-|.
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 2344566799999874
No 250
>PRK09354 recA recombinase A; Provisional
Probab=96.60 E-value=0.01 Score=60.62 Aligned_cols=84 Identities=23% Similarity=0.293 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc------cchhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE------ESESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 224 (679)
-+++-|+|++|+||||||.+++...... -..++||+....++.. .++++|...+. ....+....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999988776533 4568899988877753 45666654211 122222333333
Q ss_pred HHHcCCceEEEEecCCC
Q 005747 225 RLKKEKRILVILDNIWG 241 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~~ 241 (679)
.+..+..-+||+|-|..
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 33455677999998753
No 251
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.60 E-value=0.007 Score=68.81 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred cccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 131 AFESRMSILNEITDALKN---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.++|.++.++.+.+.+.. .....+.++|+.|+|||++|+.++..... ..+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 467888888888888751 12457899999999999999999887732 23344444322211 1
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
+.+-+|.+.... .......+.+.+.+...-+|+||++...
T Consensus 530 ~~~LiG~~~gyv-g~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYV-GFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCcc-cccccchHHHHHHhCCCcEEEeccHhhh
Confidence 222234321111 0111123334444444569999999765
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.01 Score=61.27 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
.+++.++|+.|+||||++..+......+.....+.+++.... ....+-++...+.++.+................+. +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-N 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-C
Confidence 479999999999999999999987543211234666664332 23455566667777766433222222333334443 3
Q ss_pred CceEEEEecCC
Q 005747 230 KRILVILDNIW 240 (679)
Q Consensus 230 k~~LlVlDdv~ 240 (679)
+-++++|..-
T Consensus 216 -~DlVLIDTaG 225 (374)
T PRK14722 216 -KHMVLIDTIG 225 (374)
T ss_pred -CCEEEEcCCC
Confidence 4567789874
No 253
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.57 E-value=0.014 Score=56.77 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~ 200 (679)
-.++.|+|.+|+|||++|.+++....... .=..++|++....++..++.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 46999999999999999999987653321 115689999888877766543
No 254
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.56 E-value=0.015 Score=59.52 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=44.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc----CCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN----DKLFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
.+++-|+|.+|+|||+|+.+++-.... ...-..++||+....|+++++.+ +++.++..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 468889999999999999998754321 11224689999999999988755 66777654
No 255
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.54 E-value=0.01 Score=57.73 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 199 (679)
-+++.|+|.+|+|||++|.+++...... ...++|++.. .++.+++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH
Confidence 4699999999999999999998876533 4678999887 56665543
No 256
>PRK06696 uridine kinase; Validated
Probab=96.53 E-value=0.0039 Score=60.46 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 134 SRMSILNEITDALK---NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 134 gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46677777777774 456789999999999999999999988753
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.0056 Score=60.59 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+.|+|++|+|||+||..++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999987654
No 258
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.51 E-value=0.018 Score=56.72 Aligned_cols=90 Identities=21% Similarity=0.365 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCC-CeEEEEEcCCCc-CHHHHHHHHHHHhCCC-------CCccchhH----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLF-DQVVFSEVSESQ-DIRKIQREIADKLGLK-------FDEESESG---- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 217 (679)
-+-++|.|.+|+|||||++.+++....+ | +.++++-+.+.. ...++.+.+.+.-... ...++...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999987754 4 456666665543 4555666554432111 11111111
Q ss_pred --HHHHHHHHHH-c-CCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-K-EKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~-~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. + ++.+|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1234445554 3 89999999998543
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.031 Score=57.22 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=47.7
Q ss_pred CCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCC
Q 005747 229 EKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEG 305 (679)
Q Consensus 229 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 305 (679)
+++-++|+|++...+ .-..+...+.....++.+|++|.+.. +..........+.+.+++.+++.+.+.+.. . .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~--~ 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG--V--A 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC--C--C
Confidence 344455667776542 11222212211123466777777644 333333445688999999999988776531 1 1
Q ss_pred ccHHHHHHHHHHHcCCChHH
Q 005747 306 NELKEVARDVAKECAGLPVA 325 (679)
Q Consensus 306 ~~~~~~~~~I~~~~~glPla 325 (679)
.. . ..+..++|-|+.
T Consensus 188 ~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP--E---ERLAFHSGAPLF 202 (325)
T ss_pred cH--H---HHHHHhCCChhh
Confidence 11 1 123568898864
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.029 Score=57.79 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
..++|+++|++|+||||++..++.....++ ..+.+++..... ...+-++..++.++.+.....+...+......+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999999988765331 235555554322 22223344455556553322222333334444432
Q ss_pred C-CceEEEEecCC
Q 005747 229 E-KRILVILDNIW 240 (679)
Q Consensus 229 ~-k~~LlVlDdv~ 240 (679)
. +.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 23467778653
No 261
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.49 E-value=0.091 Score=55.39 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
...+|.++|..|+||||.+..++.....++ ..++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcC
Confidence 357999999999999999999887665332 24455544
No 262
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.11 Score=52.26 Aligned_cols=166 Identities=11% Similarity=0.052 Sum_probs=94.1
Q ss_pred HHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh--------ccCCCCCeEEEEEc-CCCcCHHHHHHHHHHHhCC
Q 005747 139 LNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRA--------ENDKLFDQVVFSEV-SESQDIRKIQREIADKLGL 208 (679)
Q Consensus 139 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-~~~~~~~~l~~~i~~~l~~ 208 (679)
++.+...+..+. .++..++|..|.||+++|..+.+.. ....+-+...+++. .....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555555544 4566799999999999999998886 22222222333332 2223333333 33443322
Q ss_pred CCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecC-cchhcccCCCcceEEecC
Q 005747 209 KFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARS-LDTLSTKMDSQKNFSVSF 285 (679)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~ 285 (679)
... ..+++-++|+|++.... ....+...+....+++.+|++|.+ ..+..........+++.+
T Consensus 84 ~~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SSF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CCc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 110 01466788888876543 234444444444556666665543 444443344567999999
Q ss_pred CChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 286 LKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 286 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
+++++..+.+... + . + ++.+..++...+|.--|+.
T Consensus 149 l~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~ 183 (299)
T PRK07132 149 PDQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEK 183 (299)
T ss_pred CCHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHH
Confidence 9999998777654 1 1 1 2445556666666333444
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.47 E-value=0.037 Score=52.20 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=69.2
Q ss_pred CcccccchHHHHHHHHH----HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITD----ALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
+-..++|.+...+.+++ ++..-...-|.+||.-|.||++|++++.+....+ .-. -|.|++
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k------------ 121 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDK------------ 121 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcH------------
Confidence 34456787777776665 3444455678899999999999999999987654 211 233322
Q ss_pred HHhCCCCCccchhHHHHHHHHHHH-cCCceEEEEecCCCc---cchhhcCCCCCC---CCCCcEEEEeecCc
Q 005747 204 DKLGLKFDEESESGRARRLHDRLK-KEKRILVILDNIWGN---LDLKAAGIPHGD---DHRGCKVLLTARSL 268 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~~~~---~~~gs~iivTtR~~ 268 (679)
++...+..+.+.|+ ...||+|..||+.=+ .....++..+.. +.+...++..|.++
T Consensus 122 ----------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 ----------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11223344555554 367899999998644 234444444432 23444455555543
No 264
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.46 E-value=0.045 Score=54.30 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=95.2
Q ss_pred cccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC-eEEEEEcCCCcCH-HHHHHHH
Q 005747 129 YEAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFD-QVVFSEVSESQDI-RKIQREI 202 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~-~~l~~~i 202 (679)
...++|-.++..++-++++ .++..-+.|+|+.|.|||+|...+..+.+ .|. ...-|......-. .-.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHH
Confidence 3456788888888888876 45566788999999999999988887722 232 3344444443322 2245556
Q ss_pred HHHhCCCCC-----ccchhHHHHHHHHHHHc-----CCceEEEEecCCCccc-------hhhcCCCCCCCCCCcEEEEee
Q 005747 203 ADKLGLKFD-----EESESGRARRLHDRLKK-----EKRILVILDNIWGNLD-------LKAAGIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 203 ~~~l~~~~~-----~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTt 265 (679)
.+++..... ..+-.+....+.+.|.+ +-++++|+|.++--.. ..-+...-....|=|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 665533211 11223445667777653 2358888887753321 011111111234667788899
Q ss_pred cCcch------hcccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 266 RSLDT------LSTKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 266 R~~~v------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
|-.-. .........++-+..++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 84211 11112222345556677777777777654
No 265
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.45 E-value=0.017 Score=53.67 Aligned_cols=74 Identities=31% Similarity=0.378 Sum_probs=44.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
..-+.++|..|+|||.||.++.+..... -..+.|+.+ .+++..+-. .... .......+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~----~~~~----~~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQ----SRSD----GSYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHC----CHCC----TTHCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceeccccc----cccc----cchhhhcCccc--c
Confidence 4679999999999999999999886543 233566654 344444432 1111 11223445554 3
Q ss_pred ceEEEEecCCCc
Q 005747 231 RILVILDNIWGN 242 (679)
Q Consensus 231 ~~LlVlDdv~~~ 242 (679)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 468889998654
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.44 E-value=0.022 Score=51.96 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
++.|+|.+|+||||+++.+....... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999998887542 45678888776543
No 267
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.023 Score=60.88 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=50.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
..++|+|+|.+|+||||++..++.....+.....+..++..... ...+.++...+.++................+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~- 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR- 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-
Confidence 35799999999999999999988765443223446666553321 1223333334445543332222233334444443
Q ss_pred CCceEEEEecCC
Q 005747 229 EKRILVILDNIW 240 (679)
Q Consensus 229 ~k~~LlVlDdv~ 240 (679)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888764
No 268
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.011 Score=66.00 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=65.5
Q ss_pred ccccchHHHHHHHHHHhc---------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 130 EAFESRMSILNEITDALK---------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
..++|.+..++.+.+.+. +....++..+|+.|||||.||++++...-... +..+-++.|.--...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHH----
Confidence 456899999999998886 22356788999999999999999998763221 334445544422111
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCce-EEEEecCCCc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRI-LVILDNIWGN 242 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 242 (679)
.+.+-+|.+..-. ..+....+-+..+ .++| +|.||++...
T Consensus 565 sVSrLIGaPPGYV-GyeeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGYV-GYEEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCCc-eeccccchhHhhh-cCCCeEEEechhhhc
Confidence 2233344443211 1112334555665 4667 8888999755
No 269
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.012 Score=54.84 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEE
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFS 187 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 187 (679)
...+|.+.|+.|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 44699999999999999999999987643 5555555
No 270
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.38 E-value=0.024 Score=55.17 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
....+++|.|++|.|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567799999999999999999999887653
No 271
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.37 E-value=0.017 Score=58.03 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
..++++++|++|+||||++..++.....+..-..+..|+..... ...+.+..-.+.++.+................+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 35699999999999999999998876532111346666655422 1223333445555555432222233334444442
Q ss_pred CCceEEEEecC
Q 005747 229 EKRILVILDNI 239 (679)
Q Consensus 229 ~k~~LlVlDdv 239 (679)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2357777753
No 272
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.36 E-value=0.011 Score=59.85 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
...+.++|||++|.|||.+|+++++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999998654
No 273
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.36 E-value=0.025 Score=57.93 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
.+++-|+|.+|+|||+++.+++....... .-..++||+....|+.+++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 57889999999999999999987753210 11379999999988888764 45556554
No 274
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0017 Score=36.92 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCcEEEcccccccccchhhhc
Q 005747 486 KLEVLCLRGSDIKRLPVEVGE 506 (679)
Q Consensus 486 ~L~~L~L~~n~i~~lp~~i~~ 506 (679)
+|++|||++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466677777777666665543
No 275
>PRK06921 hypothetical protein; Provisional
Probab=96.34 E-value=0.018 Score=57.13 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=44.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
....+.++|..|+|||+||.++++....+. ...++|+... +++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhc--
Confidence 456799999999999999999999865431 2446676642 2333332221 11122333333
Q ss_pred CceEEEEecC
Q 005747 230 KRILVILDNI 239 (679)
Q Consensus 230 k~~LlVlDdv 239 (679)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 3469999999
No 276
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.31 E-value=0.002 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=11.4
Q ss_pred CCccEEEEecCcCccCC
Q 005747 658 SQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 658 ~~L~~L~l~~n~l~~lp 674 (679)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 57899999999998887
No 277
>PTZ00035 Rad51 protein; Provisional
Probab=96.29 E-value=0.029 Score=57.78 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=42.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc----CCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN----DKLFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
..++.|+|.+|+||||++..++-.... ...-..++|++....|+.+++ .++++.++..
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 578999999999999999998755431 111245789999888888774 4456666543
No 278
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.27 E-value=0.02 Score=58.69 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=43.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
..++-|+|.+|+|||+++..++-..... ..-..++||+....|+.+++ .+|++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 5688899999999999999887543211 11236999999999999886 4567777654
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.089 Score=57.82 Aligned_cols=132 Identities=23% Similarity=0.241 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
..+.+.++|++|.|||.||+++++..... | +.+... ++.. .+.. .....+..+...-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l~s--------k~vG-esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS----ELLS--------KWVG-ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HHhc--------cccc-hHHHHHHHHHHHHHcC
Confidence 45689999999999999999999965543 3 222221 0000 0011 1122334444444456
Q ss_pred CceEEEEecCCCccch-------------hhcCCCCCC--CCCCcEEEEeecCcchhccc----CCCcceEEecCCChHH
Q 005747 230 KRILVILDNIWGNLDL-------------KAAGIPHGD--DHRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEE 290 (679)
Q Consensus 230 k~~LlVlDdv~~~~~~-------------~~l~~~~~~--~~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e 290 (679)
.+..|.+|+++....+ ..+...+.. ...+..||-||-........ ..-...+.+..-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 7899999998543211 112222211 12233344455443333211 1335688999999999
Q ss_pred HHHHHHHHhCC
Q 005747 291 AWSLFKKMAGD 301 (679)
Q Consensus 291 ~~~Lf~~~~~~ 301 (679)
..+.|+.....
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998863
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.042 Score=57.34 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC--CCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEND--KLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRL 226 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l 226 (679)
..++|.++|+.|+||||.+..++...... ..-..+..++..... ...+-++..++.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999999988775432 122346666665432 223336666777777643332222233333333
Q ss_pred HcCCceEEEEecCCC
Q 005747 227 KKEKRILVILDNIWG 241 (679)
Q Consensus 227 ~~~k~~LlVlDdv~~ 241 (679)
.+.-++++|..-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 2346888898743
No 281
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.24 E-value=0.011 Score=51.53 Aligned_cols=110 Identities=13% Similarity=0.255 Sum_probs=46.8
Q ss_pred ccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcCccccChhhhcCCccc
Q 005747 459 LGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRELEIIPPNVLSKLSHL 535 (679)
Q Consensus 459 ~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L 535 (679)
|.++.+|+.+.+.. .+..+ ..|..+.+|+.+.+..+ +..++. .+..+++|+.+.+.. . ...++...|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccccccc
Confidence 55566666666653 33332 34556666666666654 555544 344555666666654 2 444555556666667
Q ss_pred ceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc
Q 005747 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG 582 (679)
Q Consensus 536 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~ 582 (679)
+.+.+..+ + .......|.+. +|+.+.+.. .+..++..
T Consensus 84 ~~i~~~~~-~-------~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~ 120 (129)
T PF13306_consen 84 KNIDIPSN-I-------TEIGSSSFSNC-NLKEINIPS-NITKIEEN 120 (129)
T ss_dssp CEEEETTT---------BEEHTTTTTT--T--EEE-TT-B-SS----
T ss_pred cccccCcc-c-------cEEchhhhcCC-CceEEEECC-CccEECCc
Confidence 76666553 3 12223445554 666665543 33444433
No 282
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.23 E-value=0.033 Score=54.15 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
..++.|.|..|.||||+|.++......+. ..++|++... +..++.+.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 45899999999999999877666543221 3467776433 556666666 44543
No 283
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.25 Score=54.57 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=65.2
Q ss_pred CcccccchHHHHHHHHHHhc---------CC---CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 128 DYEAFESRMSILNEITDALK---------NG---DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
.-.++-|-++.+.+|.+-+. .. .++=|.++|++|.|||-+|++|+....-. |+.|-.+
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH---
Confidence 34566788888888888764 12 24578899999999999999999876533 5555443
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
+++.. .+| ..++-+.++.++-+..++++|.+|.+++.
T Consensus 740 -ELLNM---YVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNM---YVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHH---Hhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 111 12344667777777789999999998653
No 284
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.15 E-value=0.0071 Score=64.93 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=42.2
Q ss_pred cccccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 129 YEAFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..+++|.++.+++|++.|. +...+++.++|+.|+||||||+.+++-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3467899999999999983 556789999999999999999999987654
No 285
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.15 E-value=0.026 Score=57.51 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=42.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc----CCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN----DKLFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
..++.|+|.+|+||||++..++..... ...-..++|++....++..++ .++++.++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 578999999999999999998764221 111246799999988888774 4456666543
No 286
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.14 E-value=0.04 Score=54.64 Aligned_cols=113 Identities=22% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE---cCCCcCHHHHHHHHHHHhC-CCC-------Cccchh
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE---VSESQDIRKIQREIADKLG-LKF-------DEESES 216 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~l~~~i~~~l~-~~~-------~~~~~~ 216 (679)
+.+.+-++|+|+.|.||||+.+.+....... ...+++. +....... +++.... .+. +..+..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~~r~~v~~~~ 180 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVGIRTDVLDGC 180 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHH----HHHHHhcccccccccccccccccc
Confidence 4445789999999999999999999876532 2333332 11111122 2322221 111 111111
Q ss_pred HHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcch
Q 005747 217 GRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDT 270 (679)
Q Consensus 217 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 270 (679)
.....+...+..-.+-++++|.+...+.+..+...+ ..|..+|+||.+..+
T Consensus 181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 223334444554568899999987766555554333 246779999987554
No 287
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.13 E-value=0.02 Score=59.68 Aligned_cols=85 Identities=29% Similarity=0.327 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc--chhHHHHHHHHHHHc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE--SESGRARRLHDRLKK 228 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 228 (679)
-.++.|.|.+|+|||||+.+++...... -..++|++.... ..++ +.-++.++...+.. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999998876543 346788876543 3333 23345666543221 111224455555555
Q ss_pred CCceEEEEecCC
Q 005747 229 EKRILVILDNIW 240 (679)
Q Consensus 229 ~k~~LlVlDdv~ 240 (679)
.+.-++|+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 567788999873
No 288
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.032 Score=56.99 Aligned_cols=85 Identities=32% Similarity=0.393 Sum_probs=60.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc--chhHHHHHHHHHHHc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE--SESGRARRLHDRLKK 228 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 228 (679)
-.+|.|=|-+|+|||||..+++.+...+. .+.||+-.+. ..++ +-.+++++.+.... -.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999987653 6777765553 3332 34467777544321 223345677788877
Q ss_pred CCceEEEEecCCC
Q 005747 229 EKRILVILDNIWG 241 (679)
Q Consensus 229 ~k~~LlVlDdv~~ 241 (679)
.++-++|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 8899999998843
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0098 Score=66.43 Aligned_cols=156 Identities=16% Similarity=0.251 Sum_probs=87.6
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC----eEEE-EEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFD----QVVF-SEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~w-v~v~~~~~~~~l~~~i~ 203 (679)
-..++||+++++++++.|....-.--.++|.+|||||++|.-++.+....+-.. ..++ ++++ .+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------~L----- 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------SL----- 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------HH-----
Confidence 345789999999999999743333345689999999999999998865543211 1111 1111 00
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc--------hhh--cCCCCCCCCCC-cEEE-EeecCcch-
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD--------LKA--AGIPHGDDHRG-CKVL-LTARSLDT- 270 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~~--l~~~~~~~~~g-s~ii-vTtR~~~v- 270 (679)
..|.... -.-++++..+.+.+.+.++.+|++|.+..... .+. +..|.. .+| -++| -||-++-.
T Consensus 238 -vAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--ARGeL~~IGATT~~EYRk 313 (786)
T COG0542 238 -VAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--ARGELRCIGATTLDEYRK 313 (786)
T ss_pred -hcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--hcCCeEEEEeccHHHHHH
Confidence 0111111 12234566666777655589999999743311 111 111211 223 2344 34443211
Q ss_pred -h---cccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 271 -L---STKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 271 -~---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
. .-.....+.+.+...+.+++..+++...
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0 0011234678888889999888887644
No 290
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.12 E-value=0.038 Score=56.70 Aligned_cols=57 Identities=25% Similarity=0.395 Sum_probs=43.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
..++-|+|.+|+|||+++.+++....... .-..++||+....|+..++.+ +++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 57899999999999999999987643211 114799999999888887654 4555554
No 291
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.10 E-value=0.06 Score=55.38 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=56.1
Q ss_pred HHHHHHHhcCC----CccEEEEEcCCCCcHHH-HHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCc
Q 005747 139 LNEITDALKNG----DVNTLGIYGIGGIGKTT-LAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDE 212 (679)
Q Consensus 139 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~ 212 (679)
...+..++.++ +.++|.++|+.|||||| ||+..+.-... ..=..+..|+...-. ...+-++.-++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 34444444433 47899999999999998 55555544411 112446677665432 3444556667777777654
Q ss_pred cchhHHHHHHHHHHHcCCceEEEEecC
Q 005747 213 ESESGRARRLHDRLKKEKRILVILDNI 239 (679)
Q Consensus 213 ~~~~~~~~~l~~~l~~~k~~LlVlDdv 239 (679)
.........-...+. .+ =+|.+|-+
T Consensus 266 v~~~~el~~ai~~l~-~~-d~ILVDTa 290 (407)
T COG1419 266 VYSPKELAEAIEALR-DC-DVILVDTA 290 (407)
T ss_pred ecCHHHHHHHHHHhh-cC-CEEEEeCC
Confidence 444444444444444 23 45555654
No 292
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.039 Score=56.63 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC-HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD-IRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
+.+++.++|+.|+||||++..++.....+ -..+.+|+...... ..+-++..++.++.+.....+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46799999999999999999998776433 23567777654332 3445566666676654322222333333444431
Q ss_pred -CCceEEEEecCCC
Q 005747 229 -EKRILVILDNIWG 241 (679)
Q Consensus 229 -~k~~LlVlDdv~~ 241 (679)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 2345788887643
No 293
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.06 E-value=0.044 Score=53.65 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
.+++.|.|.+|+|||++|.++......+ -..++||+... +..++.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 4689999999999999999877654322 45688888765 455555553
No 294
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.05 E-value=0.036 Score=55.45 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
....+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988766543
No 295
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.05 E-value=0.029 Score=54.17 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
-+++.|.|.+|+||||+|.+++...... -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 5789999999999999999998876432 34678888766554
No 296
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.05 E-value=0.013 Score=52.03 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=33.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
|.++|.+|+|||+||+.+++.... ....+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999998732 3556788888888776543
No 297
>PRK06547 hypothetical protein; Provisional
Probab=96.04 E-value=0.0096 Score=54.85 Aligned_cols=35 Identities=43% Similarity=0.472 Sum_probs=28.4
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 142 ITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444566788999999999999999999998754
No 298
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.04 E-value=0.063 Score=54.27 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=52.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 225 (679)
-+++-|+|+.|+||||||..+....... -..++||+....++.. .++.+|.+.+. .+..+.+-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999998876443 4568999998887765 35566665432 1222222233344
Q ss_pred H-HcCCceEEEEecCCCc
Q 005747 226 L-KKEKRILVILDNIWGN 242 (679)
Q Consensus 226 l-~~~k~~LlVlDdv~~~ 242 (679)
+ +.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 3 4455568999988554
No 299
>PRK04296 thymidine kinase; Provisional
Probab=96.03 E-value=0.0077 Score=56.67 Aligned_cols=110 Identities=20% Similarity=0.131 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc---cchhHHHHHHHHHHHc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE---ESESGRARRLHDRLKK 228 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 228 (679)
.++.|+|..|.||||+|..+..+.... ...++++. ..++.+.....++++++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999998887543 22334342 2222222234556666643322 111222222222 23
Q ss_pred CCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCcc
Q 005747 229 EKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSLD 269 (679)
Q Consensus 229 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 269 (679)
++.-+||+|.+.-. ++...+...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 44458999998542 2222222111 235778999998743
No 300
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.059 Score=51.38 Aligned_cols=92 Identities=22% Similarity=0.358 Sum_probs=58.6
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
+..+-|=.+.++++.+-.. -+..+-|.++|++|.|||-+|++|+|+-... |+.|-..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac-------firvigs--- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC-------FIRVIGS--- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce-------EEeehhH---
Confidence 4556677777888777553 1345678899999999999999999976532 3332221
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
++.++- +| .....+..+.+-.+.+|-++|.+|.++
T Consensus 246 -elvqky---vg------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 -ELVQKY---VG------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -HHHHHH---hh------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 111111 11 123445566666666778899999874
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.01 E-value=0.052 Score=57.74 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=48.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC-HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD-IRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
.+++.++|++|+||||++..++........-..+.+|+...... ..+-++...+.++.+................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 46999999999999999988877654111134577777654221 122334445555655432222222222233332
Q ss_pred CceEEEEecC
Q 005747 230 KRILVILDNI 239 (679)
Q Consensus 230 k~~LlVlDdv 239 (679)
..=+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3457888865
No 302
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.05 Score=53.83 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=56.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH-hCCCC-CccchhHHHHHHHHHHHc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK-LGLKF-DEESESGRARRLHDRLKK 228 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~-l~~~~-~~~~~~~~~~~l~~~l~~ 228 (679)
.+++=|+|+.|.||||+|.+++-..... -..++|++....++++.+.. ++.. +..-. ......+....+.+.+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4688999999999999999988765543 34799999999999887644 3333 22111 122222333333333321
Q ss_pred -C--CceEEEEecCCC
Q 005747 229 -E--KRILVILDNIWG 241 (679)
Q Consensus 229 -~--k~~LlVlDdv~~ 241 (679)
. +--|+|+|.+..
T Consensus 137 ~~~~~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAEKIDLLVVDSVAA 152 (279)
T ss_pred hccCCCCEEEEecCcc
Confidence 2 356889998743
No 303
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.97 E-value=0.037 Score=53.36 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
+|+|.|.+|+||||+|+.+.........=..+..++....+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999876531001234455555444
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.038 Score=51.14 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGL 208 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~ 208 (679)
++.++|++|+||||+++.++...... -..++.++..... ...+.+...++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 68899999999999999999876543 1235555544321 223333344444443
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.04 Score=53.45 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=67.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-----CcCHHHHHHHHHHHhCCCCCc-------cchhHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-----SQDIRKIQREIADKLGLKFDE-------ESESGR 218 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 218 (679)
..+++|+|.+|.||||+++.+..-.... .+.+++.-.+ .....+-..++++.+|..... -+.-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 4689999999999999999999876543 3333433221 222344456667777754211 111122
Q ss_pred HHHHHHHHHcCCceEEEEecCCCccch------hhcCCCCCCCCCCcEEEEeecCcchhcc
Q 005747 219 ARRLHDRLKKEKRILVILDNIWGNLDL------KAAGIPHGDDHRGCKVLLTARSLDTLST 273 (679)
Q Consensus 219 ~~~l~~~l~~~k~~LlVlDdv~~~~~~------~~l~~~~~~~~~gs~iivTtR~~~v~~~ 273 (679)
......+...-++-++|.|..-+..+. -.+...+ ....|-..+..|.+-.++..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhh
Confidence 222233333357899999986554221 1111111 11235568888888777643
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.057 Score=57.37 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=40.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKF 210 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~ 210 (679)
...+|.++|..|+||||.|..++......+ ..+..|++... ....+.++.++++++.+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 467999999999999999999998776432 24555554432 123455666777776653
No 307
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.01 Score=52.37 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDK 179 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 179 (679)
--|.|.|++|+||||+++.+.+..+...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999887654
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.031 Score=58.29 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
.+++.++|++|+||||++..++........ ..+..++..... ...+.++..++.++.+.... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 468999999999999999999875432211 234444443311 22334444555666543221 1123444444433
Q ss_pred CceEEEEec
Q 005747 230 KRILVILDN 238 (679)
Q Consensus 230 k~~LlVlDd 238 (679)
..=+||+|-
T Consensus 299 ~~D~VLIDT 307 (432)
T PRK12724 299 GSELILIDT 307 (432)
T ss_pred CCCEEEEeC
Confidence 334688884
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=95.84 E-value=0.093 Score=53.73 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC--HHHHHHHHHHHhCCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD--IRKIQREIADKLGLKF 210 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~i~~~l~~~~ 210 (679)
+..+|.++|+.|+||||++..++......+ + .++.+.. +.+. ..+-++..++.++.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAG-DTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecC-CcCcHHHHHHHHHHHHHcCCce
Confidence 467999999999999998888887765432 2 3444443 2332 2334556677777653
No 310
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.84 E-value=0.027 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998764
No 311
>PRK07667 uridine kinase; Provisional
Probab=95.83 E-value=0.012 Score=55.48 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=29.4
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 140 NEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 140 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
+.|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444 345579999999999999999999988753
No 312
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.014 Score=51.50 Aligned_cols=45 Identities=33% Similarity=0.493 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKF 210 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 210 (679)
+|.|-|.+|.||||+|+.++++..-. | .+...++++|++..|...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999987643 1 134568899999988763
No 313
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.82 E-value=0.064 Score=54.88 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=30.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
...+.++|..|+|||+||.++++....+ -..++|+++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTADE 221 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHHH
Confidence 3779999999999999999999987644 23567765543
No 314
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.79 E-value=0.032 Score=52.34 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
+.|.|++|+|||++|.++....... -..++|++... +.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6799999999999999987775432 24577887654 35555444
No 315
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.77 E-value=0.0064 Score=53.96 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 134 SRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 134 gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
|+...++++.+.+. ......|.|+|..|+||+++|+.++.....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 55555666666554 234456789999999999999999987553
No 316
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.065 Score=56.45 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=47.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
..+++++|+.|+||||++..++.........+.+.++..... ....+-+...++.++.+................+. +
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-G 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc-C
Confidence 479999999999999999988775422211233444443331 12333355566666665432222222222233332 2
Q ss_pred CceEEEEecC
Q 005747 230 KRILVILDNI 239 (679)
Q Consensus 230 k~~LlVlDdv 239 (679)
.-++++|-.
T Consensus 270 -~d~VLIDTa 278 (420)
T PRK14721 270 -KHMVLIDTV 278 (420)
T ss_pred -CCEEEecCC
Confidence 345666654
No 317
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.75 E-value=0.0085 Score=52.28 Aligned_cols=22 Identities=64% Similarity=0.912 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 005747 154 LGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (679)
|.|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 318
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.74 E-value=0.065 Score=52.40 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc------------------
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE------------------ 212 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------------------ 212 (679)
-+++.|+|.+|+|||++|.++......+ -..++|++.... ..++.+.+ ++++.....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 5689999999999999999996654322 356888888654 45555553 344432111
Q ss_pred ---cchhHHHHHHHHHHHcCCceEEEEecCC
Q 005747 213 ---ESESGRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 213 ---~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
.........+.+.+.+.+.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334444444544456689999875
No 319
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.73 E-value=0.01 Score=56.19 Aligned_cols=26 Identities=46% Similarity=0.617 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
||+|.|.+|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999987643
No 320
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.34 Score=46.00 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=84.6
Q ss_pred ccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH
Q 005747 132 FESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI 198 (679)
Q Consensus 132 ~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 198 (679)
+-|-++.+++|.+-+. -.+.+-+.++|++|.|||-||++|+.+. ++.|+.||.. ++
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----el 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----EL 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HH
Confidence 3355666666665543 1246678899999999999999998754 3456777764 22
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------ch----hhcCCCCC--CCCCCcE
Q 005747 199 QREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------DL----KAAGIPHG--DDHRGCK 260 (679)
Q Consensus 199 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~~~--~~~~gs~ 260 (679)
.++.+ | .....+..++--.+...+-+|..|.+++.. +. -.+...+. ...+.-+
T Consensus 218 vqk~i---g------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 218 VQKYI---G------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHHh---h------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 22211 1 112233334333344668899999875431 00 01111111 1234567
Q ss_pred EEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHh
Q 005747 261 VLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 261 iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
||..|..-+++.... .-...++..+-+++.-.++++-..
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888887666663221 224567777777777677766544
No 321
>PRK04328 hypothetical protein; Provisional
Probab=95.71 E-value=0.054 Score=53.39 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
.-+++.|.|.+|.|||++|.++......+ -..++|++... +..++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHHHH-HHHHcCC
Confidence 35789999999999999999977664322 35678888766 3444433 3455553
No 322
>PRK05439 pantothenate kinase; Provisional
Probab=95.71 E-value=0.085 Score=53.21 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=44.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH--HHHHhCCCCCccchhHHHHHHHHHH
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE--IADKLGLKFDEESESGRARRLHDRL 226 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~--i~~~l~~~~~~~~~~~~~~~l~~~l 226 (679)
+..-+|+|.|.+|+||||+|+.+............+.-++...-+...+.+.. +...-|. .+.-+..........+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~--Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF--PESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC--cccccHHHHHHHHHHH
Confidence 45679999999999999999999886542211123445555554433332221 1111111 1222334455666666
Q ss_pred HcCCc
Q 005747 227 KKEKR 231 (679)
Q Consensus 227 ~~~k~ 231 (679)
+.|+.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66654
No 323
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.70 E-value=0.041 Score=51.98 Aligned_cols=50 Identities=30% Similarity=0.404 Sum_probs=33.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCC--------CeEEEEEcCCCcCHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLF--------DQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.++.|.|.+|+||||++..+.........| ..++|++.... ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 488999999999999999999887653333 35888877765 334444443
No 324
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.67 E-value=0.088 Score=51.79 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=58.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc--cCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CccchhH---
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE--NDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKF-------DEESESG--- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~--- 217 (679)
-+-++|.|-+|+|||+|+..+.+... .+..-+.++|+-+.+.. ...++..++.+.=.... ..++...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 35689999999999999999988754 12234678888887654 55666666654322211 1111111
Q ss_pred ---HHHHHHHHHH-c-CCceEEEEecCCCc
Q 005747 218 ---RARRLHDRLK-K-EKRILVILDNIWGN 242 (679)
Q Consensus 218 ---~~~~l~~~l~-~-~k~~LlVlDdv~~~ 242 (679)
....+-+++. + ++++|+++||+...
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1234555654 3 78999999998654
No 325
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.66 E-value=0.094 Score=52.29 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=37.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH--HHHHHHHHHHhCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI--RKIQREIADKLGLK 209 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~i~~~l~~~ 209 (679)
+.+++.++|++|+||||.+..++...... -..+.+++... +.. .+-++..++..+.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeE
Confidence 45799999999999999999998776543 23566666553 322 22333345555543
No 326
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.65 E-value=0.01 Score=59.20 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc-chhHH
Q 005747 140 NEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE-SESGR 218 (679)
Q Consensus 140 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~-~~~~~ 218 (679)
..+++.+...+ +-+.++|+.|+|||++++.......... | .+.-++.+...+...+++.+-..+....... ..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC---
Confidence 34455544444 4568999999999999999887644322 1 2445566665555544433222221100000 00
Q ss_pred HHHHHHHHHcCCceEEEEecCC
Q 005747 219 ARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 219 ~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
..+|+.++.+||+-
T Consensus 97 --------~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 97 --------PGGKKLVLFIDDLN 110 (272)
T ss_dssp --------ESSSEEEEEEETTT
T ss_pred --------CCCcEEEEEecccC
Confidence 13688899999974
No 327
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.084 Score=59.48 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
.++|+++|+.|+||||.+..++...........+..++..... ...+-++...+.++.+.....+...+....+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 4699999999999999999888765322112345555544321 2345566666777765432222222333333333 2
Q ss_pred CceEEEEecCC
Q 005747 230 KRILVILDNIW 240 (679)
Q Consensus 230 k~~LlVlDdv~ 240 (679)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 2 466777653
No 328
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.64 E-value=0.018 Score=60.99 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=40.5
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC
Q 005747 130 EAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFD 182 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 182 (679)
..++||++.++.+...+..+ .-|.+.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 35779999999998887644 3578999999999999999998765433453
No 329
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.06 Score=57.68 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=38.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKF 210 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~ 210 (679)
.+|++++|+.|+||||.+..++.....+.....+..++.... ....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 479999999999999999999987643221224556655432 133344555566666543
No 330
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.0056 Score=34.77 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=15.9
Q ss_pred CccEEEEecCcCccCCCCCC
Q 005747 659 QLKHLYIRGSHLTLNPAESK 678 (679)
Q Consensus 659 ~L~~L~l~~n~l~~lp~~~~ 678 (679)
+|++|+|++|+|+.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 57888888888888887653
No 331
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.091 Score=49.74 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=80.1
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
+..+-|-+-.++++.+... -+..+-|.++|++|.|||.||++|+++-... | +.|-..
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs--- 223 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS--- 223 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH---
Confidence 3445566666666666543 2356778899999999999999999987644 3 322221
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------chhhc----CCCCC--CCCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------DLKAA----GIPHG--DDHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~~~l----~~~~~--~~~~ 257 (679)
+..+ +.+|.. ...+..+..--+.+.+-+|.+|.++... +...+ ..... +...
T Consensus 224 -efvq---kylgeg------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 224 -EFVQ---KYLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred -HHHH---HHhccC------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 1111 122211 2333444444445678889999875321 11111 11111 2234
Q ss_pred CcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHh
Q 005747 258 GCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
.-+||..|...+.+... -.-...++..--+.-+-.-.|....
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 56788877654433211 1123455665444455555565544
No 332
>PHA02244 ATPase-like protein
Probab=95.58 E-value=0.06 Score=55.11 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 140 NEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 140 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+..++..+ .-|.|+|++|+|||++|++++....
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555433 3467899999999999999998854
No 333
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.58 E-value=0.11 Score=51.64 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=39.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
..+++.|.|.+|+|||+++.++....... ...++||+.... .+++.+.+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH
Confidence 46799999999999999999999887655 778999988874 445555443
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.57 E-value=0.022 Score=54.84 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=40.2
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 139 LNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 139 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
-.++++.+. .++..+|+|.|++|+||+||+-.+......+.+=-.++-|+.|.+++--.++-
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 334444443 44678999999999999999999998887655455677788888887655543
No 335
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.028 Score=55.22 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
-|+|.++|++|.|||+|+++++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999997664
No 336
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.54 E-value=0.012 Score=44.94 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 337
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.52 E-value=0.021 Score=51.09 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE 188 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (679)
..||.|.|.+|.||||||+.+....... -..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3589999999999999999999998765 34456654
No 338
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.52 E-value=0.013 Score=56.18 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.49 E-value=0.013 Score=52.26 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 340
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.49 E-value=0.021 Score=55.76 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=47.6
Q ss_pred HHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 141 EITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 141 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
+++..+. .++..+|+|.|.+|+||+||.-.+......+.+=-.++=|+.|.+++--.++-+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 3444443 566789999999999999999999999877766667888888888876666544
No 341
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.34 Score=48.31 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccC------------CCCCeEEEEEcC-C--CcCHHHHHHHH
Q 005747 139 LNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAEND------------KLFDQVVFSEVS-E--SQDIRKIQREI 202 (679)
Q Consensus 139 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~F~~~~wv~v~-~--~~~~~~l~~~i 202 (679)
-+++...+..+. .+...++|+.|+||+++|..++...--. .|-|.. |+... . ...++++ +++
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~-~i~p~~~~~~I~idqi-R~l 83 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH-EFSPQGKGRLHSIETP-RAI 83 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE-EEecCCCCCcCcHHHH-HHH
Confidence 456666666655 4577899999999999999988765321 123322 22111 1 1122222 222
Q ss_pred HHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-cchhcccCCCcc
Q 005747 203 ADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS-LDTLSTKMDSQK 279 (679)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~~~~~ 279 (679)
.+.+.... ..++.-++|+|++... ..+..+...+....+++.+|++|.+ ..++........
T Consensus 84 ~~~~~~~p----------------~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq 147 (290)
T PRK05917 84 KKQIWIHP----------------YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred HHHHhhCc----------------cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcce
Confidence 22222110 1255568888988665 3455555555444556666666666 444333333445
Q ss_pred eEEecCC
Q 005747 280 NFSVSFL 286 (679)
Q Consensus 280 ~~~l~~L 286 (679)
.+.+.++
T Consensus 148 ~~~~~~~ 154 (290)
T PRK05917 148 SIHIPME 154 (290)
T ss_pred EEEccch
Confidence 6666654
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.47 E-value=0.029 Score=53.16 Aligned_cols=109 Identities=11% Similarity=0.111 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEK 230 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 230 (679)
.+|.|+|+.|.||||++..+....... ....++.--.. .+.... ...+..+-.. ..........+...+.. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~-~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHES-KRSLINQREV---GLDTLSFENALKAALRQ-D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccC-ccceeeeccc---CCCccCHHHHHHHHhcC-C
Confidence 478999999999999999887765432 23333322111 110000 0011111000 11112233344555553 4
Q ss_pred ceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcch
Q 005747 231 RILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDT 270 (679)
Q Consensus 231 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 270 (679)
+=.|++|++.+.+.+...... ...|..++.|+...++
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 679999999876654432221 1235557777765544
No 343
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.47 E-value=0.016 Score=55.72 Aligned_cols=26 Identities=35% Similarity=0.699 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
++|+|.|-||+||||++..++.-...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999999888877654
No 344
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.47 E-value=0.067 Score=58.35 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc----------------c
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE----------------E 213 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----------------~ 213 (679)
.-+++.|.|.+|+|||||+.++......+ -..++|+.... +..++...+ +.+|.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 35789999999999999999998876543 34577766555 455665553 566643211 0
Q ss_pred chhHHHHHHHHHHHcCCceEEEEecC
Q 005747 214 SESGRARRLHDRLKKEKRILVILDNI 239 (679)
Q Consensus 214 ~~~~~~~~l~~~l~~~k~~LlVlDdv 239 (679)
...+.+..+.+.+...+.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 11334555555555445556777765
No 345
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.46 E-value=0.014 Score=55.82 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
....+|+|+|++|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 346
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.45 E-value=0.081 Score=52.49 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
-+++.|.|.+|+|||++|.+++.....+ -..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999987764332 34678888764
No 347
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.44 E-value=0.029 Score=47.80 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=32.2
Q ss_pred cccchHHHHHHHHHHhc-------CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 131 AFESRMSILNEITDALK-------NGDVNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
.++|..-..+.+++.+. ....=|++.+|++|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 44566555555555553 234558999999999999999999887
No 348
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.44 E-value=0.079 Score=48.59 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=47.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC-Cce
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE-KRI 232 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 232 (679)
+.|.|.+|+|||++|.++.... ...++|+.-...++.+ ..+.|.+.-..........+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6789999999999999998652 2457788777777653 44454432222222222222223344444321 334
Q ss_pred EEEEecC
Q 005747 233 LVILDNI 239 (679)
Q Consensus 233 LlVlDdv 239 (679)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999986
No 349
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.41 E-value=0.034 Score=61.92 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=60.6
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
+.....++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+.... ..++..+|..- ...+...+++.++..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 345667889999999888877655 46889999999999999999987532 34577777544 444777888888877
Q ss_pred hCCC
Q 005747 206 LGLK 209 (679)
Q Consensus 206 l~~~ 209 (679)
+|..
T Consensus 103 ~G~~ 106 (637)
T PRK13765 103 KGKQ 106 (637)
T ss_pred cCHH
Confidence 7643
No 350
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.40 E-value=0.055 Score=51.64 Aligned_cols=86 Identities=26% Similarity=0.517 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccchhH------
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLK-------FDEESESG------ 217 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~------ 217 (679)
.-++|.|.+|+|||+|++.+.+.... +.++++.+.+. ....++.+++...-... ...++...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~----d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA----DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT----TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc----cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 57899999999999999999998753 44577777654 45566666653321111 11111111
Q ss_pred HHHHHHHHHH-cCCceEEEEecCCC
Q 005747 218 RARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 218 ~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
..-.+-+++. +++.+|+++||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 1122333333 58999999999843
No 351
>PRK08233 hypothetical protein; Provisional
Probab=95.39 E-value=0.014 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 352
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.079 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999886
No 353
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.35 E-value=0.051 Score=58.33 Aligned_cols=85 Identities=31% Similarity=0.341 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc--chhHHHHHHHHHHHc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE--SESGRARRLHDRLKK 228 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 228 (679)
-.++.|.|.+|+|||||+.+++...... -..++|++.... ..++.. .++.++...... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999998876532 245788876543 344332 255666432210 011123455555554
Q ss_pred CCceEEEEecCC
Q 005747 229 EKRILVILDNIW 240 (679)
Q Consensus 229 ~k~~LlVlDdv~ 240 (679)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 566688888873
No 354
>PTZ00301 uridine kinase; Provisional
Probab=95.35 E-value=0.015 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.541 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 355
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.34 E-value=0.19 Score=49.99 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-------cc
Q 005747 142 ITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-------ES 214 (679)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-------~~ 214 (679)
..+++...+..+|.|.|..|+|||||+..+.+..... . .++.+ ..+..+..+ ...++..+.+..+ ..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 4445556778999999999999999999999987543 2 22333 222222222 1223444433211 11
Q ss_pred hhHHHHHHHHHHHcCCceEEEEecCCC
Q 005747 215 ESGRARRLHDRLKKEKRILVILDNIWG 241 (679)
Q Consensus 215 ~~~~~~~l~~~l~~~k~~LlVlDdv~~ 241 (679)
+...+......|.....-++|++++-+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 223344445555433446778898854
No 356
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.32 E-value=0.034 Score=52.35 Aligned_cols=50 Identities=26% Similarity=0.433 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKF 210 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 210 (679)
.|+|+|-||+||||+|.........++. ..+.-|+...+++.. ++||...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCC
Confidence 5899999999999999997777655443 345667777766543 4566554
No 357
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.31 E-value=0.021 Score=57.93 Aligned_cols=45 Identities=20% Similarity=0.427 Sum_probs=33.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
+++.++|.+.|-|||||||+|..++.-.... -..+.-++.....+
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~--G~rVLliD~D~q~~ 47 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM--GQRILIVGCDPKAD 47 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC--CCcEEEEEccCCCC
Confidence 4667999999999999999998888876654 22455666655443
No 358
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.29 E-value=0.02 Score=57.65 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
++|+|+|-||+||||+|..++.-....+ ..+.-|+.....+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G--~rVLliD~Dpq~n~ 43 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESG--KKVLVVGCDPKADC 43 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCC--CEEEEEeeCCcccc
Confidence 5789999999999999999888876432 24666666655443
No 359
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.27 E-value=0.068 Score=60.40 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc------cchhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE------ESESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 224 (679)
-+++-|+|.+|+|||||+.+++...... -..++|++....++.. .++++|...+. ...+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788999999999999998876654322 3558999988877743 67778775321 122222333333
Q ss_pred HHHcCCceEEEEecCC
Q 005747 225 RLKKEKRILVILDNIW 240 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~ 240 (679)
.+..++.-|||+|-+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 3445667799999875
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.26 E-value=0.13 Score=54.54 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLK 209 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~ 209 (679)
...++.++|.+|+||||.|..++.....+. -..+..|++.... ...+-++..++..+.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 357999999999999999998887754211 1234455444321 1223334445555544
No 361
>PRK06762 hypothetical protein; Provisional
Probab=95.24 E-value=0.017 Score=53.12 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.++|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 362
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.038 Score=51.32 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=33.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
..+|+|-||=|+||||||+.++++.... +++-.+.++.=......++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4689999999999999999999998743 3333444544344444443
No 363
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.018 Score=54.14 Aligned_cols=29 Identities=41% Similarity=0.554 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
.+.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45789999999999999999999987743
No 364
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.22 E-value=0.069 Score=49.67 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|.|..|.|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999987643
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.21 E-value=0.062 Score=55.89 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHHhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 130 EAFESRMSILNEITDALKNG--------------DVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34678888877776555421 2367899999999999999999998754
No 366
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.17 E-value=0.11 Score=59.63 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=42.9
Q ss_pred cccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 129 YEAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
...++|+...+..+.+.+. ......|.|+|..|+|||++|+.++...... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 3468898888888776665 2334568899999999999999998865322 12344555554
No 367
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.17 E-value=0.055 Score=47.11 Aligned_cols=114 Identities=15% Similarity=0.271 Sum_probs=64.5
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
.+|+.+.+.. .+..++. .|.++++|+.+.+.++ +..+ ..|.++++|+.+.+.. .+..++. .+..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4788888874 5666654 5788889999999875 6664 5588888999999976 6666655 4566999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCc
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI 567 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~ 567 (679)
..+ +..++...|.+. +|+.+.+.. .+ .......|.++++|+
T Consensus 89 ~~~--~~~i~~~~f~~~-~l~~i~~~~-~~-------~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN--ITEIGSSSFSNC-NLKEINIPS-NI-------TKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT---BEEHTTTTTT--T--EEE-TT-B--------SS----GGG------
T ss_pred Ccc--ccEEchhhhcCC-CceEEEECC-Cc-------cEECCccccccccCC
Confidence 764 567777778887 999999876 33 223345666666653
No 368
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.17 E-value=0.00067 Score=63.04 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=41.2
Q ss_pred CCCCCCEEEcCCCCCCCc-hhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceee
Q 005747 461 LLSNLQTLSLYNCKLLDI-TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELY 539 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~ 539 (679)
.+...+.||++.|++... ..|+.++.|..|+++.|.+..+|..++.+..++.+++..|+ .+..|.+ ++.++.+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcchhh
Confidence 344445555555554442 33444455555555555555555555555555555554443 4445544 45555555555
Q ss_pred cCCCCC
Q 005747 540 MGPRSF 545 (679)
Q Consensus 540 l~~n~~ 545 (679)
+-+|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 554443
No 369
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.021 Score=49.58 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.+-|.|.|.+|+||||++..++....-. |+++++-..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~-------~i~isd~vk 43 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE-------YIEISDLVK 43 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc-------eEehhhHHh
Confidence 4568899999999999999999665433 677776433
No 370
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.15 E-value=0.15 Score=46.72 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|..|.|||||++.+.-...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987643
No 371
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.15 E-value=0.016 Score=48.83 Aligned_cols=24 Identities=54% Similarity=0.750 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
|.|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999998887653
No 372
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.1 Score=54.89 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CccchhH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKF-------DEESESG---- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~---- 217 (679)
.-..++|+|..|+|||||++.++.... .+.++++-+.+.. ...++.+.++..-+... ..++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999986432 3455566565443 34555555543322211 1111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +|+++|+++||+...
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1233444553 589999999998543
No 373
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.14 E-value=0.092 Score=48.94 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE---cCCCcCHHHHHH------HHHHHhCCCCC------ccch
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE---VSESQDIRKIQR------EIADKLGLKFD------EESE 215 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~l~~------~i~~~l~~~~~------~~~~ 215 (679)
-.+++|+|..|.|||||++.++-.... ..+.+++. +.. .+...... ++++.++.... ..+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999876432 33444442 221 12222211 24555554321 0111
Q ss_pred -hHHHHHHHHHHHcCCceEEEEecCCCccc---hhhcCCCCCC-CCC-CcEEEEeecCcchh
Q 005747 216 -SGRARRLHDRLKKEKRILVILDNIWGNLD---LKAAGIPHGD-DHR-GCKVLLTARSLDTL 271 (679)
Q Consensus 216 -~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~~~~-~~~-gs~iivTtR~~~v~ 271 (679)
....-.+...+. ..+-++++|+....-+ ...+...+.. ... |..||++|.+.+.+
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 111222333444 4678999998754422 1122111111 112 56788888875543
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.13 E-value=0.082 Score=56.81 Aligned_cols=85 Identities=25% Similarity=0.274 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCcc--chhHHHHHHHHHHHc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEE--SESGRARRLHDRLKK 228 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 228 (679)
-.++.|.|.+|+|||||+.++....... -..++|++.... ..++.. -++.++...+.. ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4689999999999999999998775433 135788876543 333322 234555432110 011123445555554
Q ss_pred CCceEEEEecCC
Q 005747 229 EKRILVILDNIW 240 (679)
Q Consensus 229 ~k~~LlVlDdv~ 240 (679)
.+.-++|+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 456678888774
No 375
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.10 E-value=0.028 Score=52.91 Aligned_cols=125 Identities=20% Similarity=0.230 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC------cCHHHH-------HH
Q 005747 134 SRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES------QDIRKI-------QR 200 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~------~~~~~l-------~~ 200 (679)
++..+....++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-+ |-+.++ ..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 34445555666665 4569999999999999999999887655577888888743221 111111 11
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHH---------HHcCC---ceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeec
Q 005747 201 EIADKLGLKFDEESESGRARRLHDR---------LKKEK---RILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTAR 266 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~---------l~~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR 266 (679)
-+.+.+..-... .....+.+. ..+|+ ..+||+|++.+. .++..+.... +.|||+|++--
T Consensus 82 p~~d~l~~~~~~----~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD 154 (205)
T PF02562_consen 82 PIYDALEELFGK----EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGD 154 (205)
T ss_dssp HHHHHHTTTS-T----TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE-
T ss_pred HHHHHHHHHhCh----HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecC
Confidence 122222211111 111122110 01233 468999999876 3566654443 57899999875
Q ss_pred C
Q 005747 267 S 267 (679)
Q Consensus 267 ~ 267 (679)
.
T Consensus 155 ~ 155 (205)
T PF02562_consen 155 P 155 (205)
T ss_dssp -
T ss_pred c
Confidence 4
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=95.10 E-value=0.13 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
...+|.++|.+|+||||.+..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999988888776543
No 377
>PRK06851 hypothetical protein; Provisional
Probab=95.06 E-value=0.25 Score=51.00 Aligned_cols=44 Identities=32% Similarity=0.411 Sum_probs=33.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
++-.+++.|.|.+|+||||+++.++.....++ ++..++-|.+++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEEEeCCCCC
Confidence 34457899999999999999999999986543 555555555554
No 378
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.053 Score=50.42 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988653
No 379
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.04 E-value=0.1 Score=46.98 Aligned_cols=115 Identities=22% Similarity=0.188 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC---CcCHHHHHHHHH----HHhCCC--CCccchhH---H-
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE---SQDIRKIQREIA----DKLGLK--FDEESESG---R- 218 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~l~~~i~----~~l~~~--~~~~~~~~---~- 218 (679)
..|-|++..|.||||.|...+-+.... -..+.++..-+ ......+++.+- .+++.. +...+..+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888999999999999988876543 22344544332 233333333320 000111 00011111 1
Q ss_pred ---HHHHHHHHHcCCceEEEEecCCCcc-----chhhcCCCCCCCCCCcEEEEeecCc
Q 005747 219 ---ARRLHDRLKKEKRILVILDNIWGNL-----DLKAAGIPHGDDHRGCKVLLTARSL 268 (679)
Q Consensus 219 ---~~~l~~~l~~~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~ 268 (679)
.....+.+..+.-=|+|||++-... ..+.+...+.....+.-+|+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223333444555699999975442 2233333333344566899999984
No 380
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.1 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
..++|+|+.|.|||||.+.+.--
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 381
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.01 E-value=0.15 Score=49.94 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=49.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCC----------CeEEEEEcCCCcC-HHHHHHHHHHHhCCCCC----------
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLF----------DQVVFSEVSESQD-IRKIQREIADKLGLKFD---------- 211 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----------~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~---------- 211 (679)
+..|+|++|+|||+||..++-.......| ..++|++...+.+ +.+=+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56799999999999999998765432211 2366777665432 23333334443321100
Q ss_pred -------c---cchhHHHHHHHHHHHcCCceEEEEecC
Q 005747 212 -------E---ESESGRARRLHDRLKKEKRILVILDNI 239 (679)
Q Consensus 212 -------~---~~~~~~~~~l~~~l~~~k~~LlVlDdv 239 (679)
. .........+.+.+...+.-+||+|-+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl 120 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPL 120 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECCh
Confidence 0 011234445555554456779999965
No 382
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.01 E-value=0.026 Score=56.65 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
++|+|+|-||+||||++..++.-.... -..+.-|+.....
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~--G~rVllvD~Dpq~ 41 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTM--GNKILLVGCDPKA 41 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhh--CCCeEEEeccccc
Confidence 578888999999999999988876543 1235555555443
No 383
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.99 E-value=0.079 Score=52.49 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH---HHHHHhCCCCCccc
Q 005747 138 ILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR---EIADKLGLKFDEES 214 (679)
Q Consensus 138 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~---~i~~~l~~~~~~~~ 214 (679)
.+.+|...|..++... .++|.||+||+|+++.++.-...+ ++-+.+++.++..+.-. .++.+.|.
T Consensus 19 hi~ri~RvL~~~~Gh~-LLvG~~GsGr~sl~rLaa~i~~~~-----~~~i~~~~~y~~~~f~~dLk~~~~~ag~------ 86 (268)
T PF12780_consen 19 HIARISRVLSQPRGHA-LLVGVGGSGRQSLARLAAFICGYE-----VFQIEITKGYSIKDFKEDLKKALQKAGI------ 86 (268)
T ss_dssp HHHHHHHHHCSTTEEE-EEECTTTSCHHHHHHHHHHHTTEE-----EE-TTTSTTTHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCCCCCe-EEecCCCccHHHHHHHHHHHhccc-----eEEEEeeCCcCHHHHHHHHHHHHHHHhc------
Confidence 4555566666555444 599999999999999888754322 33345566665554432 22222222
Q ss_pred hhHHHHHHHHHHHcCCceEEEEecCC
Q 005747 215 ESGRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 215 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
++++..++++|-+
T Consensus 87 -------------~~~~~vfll~d~q 99 (268)
T PF12780_consen 87 -------------KGKPTVFLLTDSQ 99 (268)
T ss_dssp -------------S-S-EEEEEECCC
T ss_pred -------------cCCCeEEEecCcc
Confidence 3678888888753
No 384
>PRK03839 putative kinase; Provisional
Probab=94.98 E-value=0.022 Score=53.15 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.|.|.|++|+||||+++.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998753
No 385
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.97 E-value=0.023 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999765
No 386
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.97 E-value=0.026 Score=48.24 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
|.|+|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 5799999999999999999987644
No 387
>PF13245 AAA_19: Part of AAA domain
Probab=94.96 E-value=0.072 Score=41.43 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=19.0
Q ss_pred CccEEEEEcCCCCcHHH-HHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTT-LAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTt-La~~v~~~~ 175 (679)
+.+++.|.|++|.|||+ +++.+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999999995 445554444
No 388
>PRK08149 ATP synthase SpaL; Validated
Probab=94.94 E-value=0.088 Score=55.47 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHHHHhCCC-------CCccchhH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIADKLGLK-------FDEESESG---- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 217 (679)
.-..++|+|.+|+|||||++.++..... +.+++..+.. ..+..++..+........ ....+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 3467899999999999999999875432 3334444433 335556666655533221 11111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +||++|+++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 2233444443 589999999998543
No 389
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.93 E-value=0.029 Score=56.39 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
++|+|.|-||+||||++-.++.-....+ ..+.-|+.....+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G--~rVLlID~Dpq~~ 42 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMG--KKVMVVGCDPKAD 42 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCC--CcEEEEecCCccc
Confidence 5889999999999999999888765431 2355666655443
No 390
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.93 E-value=0.14 Score=54.44 Aligned_cols=90 Identities=22% Similarity=0.368 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccchhH-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLK-------FDEESESG----- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~----- 217 (679)
-+-++|.|.+|+|||||+.++....... +-+.++++-+.+. ....++...+...-... ....+...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4578999999999999999988877643 4577778777654 34556666655432211 11111111
Q ss_pred -HHHHHHHHHH-c-CCceEEEEecCCC
Q 005747 218 -RARRLHDRLK-K-EKRILVILDNIWG 241 (679)
Q Consensus 218 -~~~~l~~~l~-~-~k~~LlVlDdv~~ 241 (679)
.+..+-++++ + |+++|+++|++..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2334555554 3 7999999999854
No 391
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.91 E-value=0.017 Score=30.41 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=6.4
Q ss_pred CCcEEEcccccccccc
Q 005747 486 KLEVLCLRGSDIKRLP 501 (679)
Q Consensus 486 ~L~~L~L~~n~i~~lp 501 (679)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 392
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.88 E-value=0.15 Score=50.24 Aligned_cols=88 Identities=11% Similarity=0.206 Sum_probs=51.5
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhccCCCCCeE-EEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccchhH---
Q 005747 151 VNTLGIYGIGGIGKTTLA-KEVARRAENDKLFDQV-VFSEVSES-QDIRKIQREIADKLGLK-------FDEESESG--- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~--- 217 (679)
-+-++|.|.+|+|||+|| ..+.+... -+.+ +++-+.+. ....++.+.+.+.-... ...++...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356899999999999995 66665432 2333 66666554 34566666665432111 11111111
Q ss_pred ---HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 ---RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 ---~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +|+.+|+++||+...
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1233444443 589999999998654
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.88 E-value=0.12 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998864
No 394
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.86 E-value=0.07 Score=54.94 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 130 EAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..++|+...+.++.+.+. .....-|.|+|..|+||+++|+.+....
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 357788888888877765 2333567899999999999999998653
No 395
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.84 E-value=0.026 Score=49.99 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
++|.|+|..|+|||||++.+.+....++ +...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g-~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG-YRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC-CceEEEEEccC
Confidence 4799999999999999999999987542 44444555444
No 396
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.84 E-value=0.072 Score=59.47 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=54.5
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
.....++|.++.++.+...+.+.. -+.++|+.|+||||+|+.+.+..... .|...+++. ....+...+++.++..+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhh
Confidence 345577899998888887776553 55599999999999999999876543 343333332 22235566677777777
Q ss_pred CCC
Q 005747 207 GLK 209 (679)
Q Consensus 207 ~~~ 209 (679)
+..
T Consensus 91 g~~ 93 (608)
T TIGR00764 91 GRE 93 (608)
T ss_pred chH
Confidence 643
No 397
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.82 E-value=0.19 Score=53.11 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CccchhH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKF-------DEESESG---- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~---- 217 (679)
.-..++|.|..|+|||||+++++..... +.++++-+.... ...++....+..-+... ...+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 3467899999999999999999976542 445555555433 34455444433322211 1111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +|+++|+++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1233445553 589999999998543
No 398
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.82 E-value=0.029 Score=51.59 Aligned_cols=43 Identities=26% Similarity=0.252 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
..++.+.|+.|+|||.+|+.+++.... +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 457889999999999999999998863 1245566667665433
No 399
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.82 E-value=0.15 Score=53.84 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=50.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh-----CCCC-CccchhH------H
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL-----GLKF-DEESESG------R 218 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l-----~~~~-~~~~~~~------~ 218 (679)
-..++|+|.+|+|||||++.+...... ...+++..-....++.++........ +.-. ..++... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 357999999999999999988765432 22344443334445554444333322 1111 1111111 1
Q ss_pred HHHHHHHHH-cCCceEEEEecCCCc
Q 005747 219 ARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 219 ~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
+..+-+++. +|+.+|+++||+...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 223444443 589999999998543
No 400
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=1.2 Score=42.77 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCCcccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 125 PNKDYEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
|...+..+-|-++.++++++.+- -...+-+..+|++|.|||-+|++.+..-..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 44556778899999999998864 113567889999999999999998876543
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.80 E-value=2.3 Score=44.31 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHHHHhCCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIADKLGLKF 210 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~ 210 (679)
.+.||-.+|.-|.||||-|-.+++..+.++ ..+.-|.+.. -+..-+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 367899999999999999999988877632 2233333221 1133445666777776653
No 402
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.79 E-value=0.34 Score=52.93 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccC------CCCCeEEEEEcCC---------------Cc-C-HHHHHHHHHHHhCC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEND------KLFDQVVFSEVSE---------------SQ-D-IRKIQREIADKLGL 208 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~wv~v~~---------------~~-~-~~~l~~~i~~~l~~ 208 (679)
..|+|+|+.|+|||||.+.+....... ..--.+.|+.-.. .+ + .+.-.+..+.+++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 469999999999999999996654321 1111233332111 00 1 13344455555554
Q ss_pred CCCcc-------chhHHHHHHHHHHHcCCceEEEEecCCCccchhh---cCCCCCCCCCCcEEEEeecCcchhcccCCCc
Q 005747 209 KFDEE-------SESGRARRLHDRLKKEKRILVILDNIWGNLDLKA---AGIPHGDDHRGCKVLLTARSLDTLSTKMDSQ 278 (679)
Q Consensus 209 ~~~~~-------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~ 278 (679)
..+.. +.-+...-....+.-.++=+||||.-.+.-+.+. +...+.. -+| .||+.|.++..+.. .+.
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~Fl~~--va~ 504 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDR--VAT 504 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHHHHh--hcc
Confidence 43221 2222333344444446788999998877644332 2222211 124 38888888766532 224
Q ss_pred ceEEecC
Q 005747 279 KNFSVSF 285 (679)
Q Consensus 279 ~~~~l~~ 285 (679)
.++.+++
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 4555553
No 403
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.78 E-value=0.062 Score=58.45 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=44.3
Q ss_pred CCcccccchHHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 127 KDYEAFESRMSILNEITDALKN-----GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
....++.-..+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+.
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 3444555566778888888862 2357999999999999999999999864 566667543
No 404
>PRK04040 adenylate kinase; Provisional
Probab=94.76 E-value=0.027 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 405
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.76 E-value=0.062 Score=53.36 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999998665
No 406
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.74 E-value=0.066 Score=53.51 Aligned_cols=56 Identities=27% Similarity=0.282 Sum_probs=44.3
Q ss_pred CcccccchHHHHHH---HHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCe
Q 005747 128 DYEAFESRMSILNE---ITDALKNG--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQ 183 (679)
Q Consensus 128 ~~~~~~gr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 183 (679)
...+++|..+..+. ++++++++ .-+.|.++|++|.|||+||-.+.+.....-+|..
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 35678888766553 67777655 3579999999999999999999999988767743
No 407
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.73 E-value=0.066 Score=46.58 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..+|.+.|.-|.||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999998654
No 408
>PRK00625 shikimate kinase; Provisional
Probab=94.71 E-value=0.028 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|.++|+.|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998865
No 409
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.18 Score=44.21 Aligned_cols=66 Identities=14% Similarity=0.348 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK 227 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 227 (679)
.+|.|.|.+|.||||+++++.....-. | ++..+-.....+ +++- -|.+....+...++..+...+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~--F-----~dgDd~Hp~~Nv-eKM~--~GipLnD~DR~pWL~~i~~~~~ 78 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLK--F-----IDGDDLHPPANV-EKMT--QGIPLNDDDRWPWLKKIAVELR 78 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCc--c-----cccccCCCHHHH-HHHh--cCCCCCcccccHHHHHHHHHHH
Confidence 489999999999999999999987633 2 222222222221 2221 2444445555566666666554
No 410
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.70 E-value=0.047 Score=51.05 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVS 190 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 190 (679)
.++|.|+|++|+|||||++.+......+ |..++..+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4789999999999999999999987644 7555555444
No 411
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.70 E-value=0.068 Score=56.05 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+++|+|++|.||||||+.+.--+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~ 387 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWP 387 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccc
Confidence 5899999999999999999876543
No 412
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.66 E-value=0.097 Score=60.09 Aligned_cols=177 Identities=19% Similarity=0.197 Sum_probs=84.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh-ccC-CCC------------CeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccch
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA-END-KLF------------DQVVFSEVSESQDIRKIQREIADKLGLKFDEESE 215 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~~F------------~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~ 215 (679)
+.+++.|.|+.|.||||+.+.+.-.. ... ..| +.+ +..+... ..+.+.++. -...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~-------~si~~~LSt---fS~~ 389 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDE-------QSIEQNLST---FSGH 389 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChH-------hHHhhhhhH---HHHH
Confidence 34789999999999999999987651 111 101 111 1111111 111111100 0001
Q ss_pred hHHHHHHHHHHHcCCceEEEEecCCCccc---hhhc----CCCCCCCCCCcEEEEeecCcchhcccCCCcc--eEEecCC
Q 005747 216 SGRARRLHDRLKKEKRILVILDNIWGNLD---LKAA----GIPHGDDHRGCKVLLTARSLDTLSTKMDSQK--NFSVSFL 286 (679)
Q Consensus 216 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~--~~~l~~L 286 (679)
......+...+ ..+-|+++|..-...+ ...+ ...+ ...|+.+|+||...++......... ...+. +
T Consensus 390 m~~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~ 464 (771)
T TIGR01069 390 MKNISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-F 464 (771)
T ss_pred HHHHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-E
Confidence 11122222222 4679999999865422 1112 1122 1357889999998665422111111 11111 1
Q ss_pred ChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHHh
Q 005747 287 KEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQL 349 (679)
Q Consensus 287 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~l 349 (679)
+.+ ... |....-...+. ...|-+|++++ |+|-.+.--|..+.. ....+...+++.+
T Consensus 465 d~~-~l~-p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L 520 (771)
T TIGR01069 465 DEE-TLS-PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKL 520 (771)
T ss_pred cCC-CCc-eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 111 110 00001011111 24577777766 788888888877765 4445555555554
No 413
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.63 E-value=0.029 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+++|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 414
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.63 E-value=0.025 Score=52.64 Aligned_cols=23 Identities=48% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999885
No 415
>PRK13768 GTPase; Provisional
Probab=94.63 E-value=0.19 Score=49.70 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
.++.|.|.||+||||++..+....... -..++.|+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEEC
Confidence 578999999999999999988776543 223555544
No 416
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.084 Score=48.76 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999988654
No 417
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.61 E-value=0.024 Score=53.80 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+|+|.|.+|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 418
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.60 E-value=0.16 Score=46.65 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 133 ESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 133 ~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|....+.++++.+. .....-|.|+|..|+||+.+|+.+++...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 566667777776654 22235566999999999999999998543
No 419
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.59 E-value=3 Score=42.56 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=33.1
Q ss_pred eEEecCCChHHHHHHHHHHhCCCCC--CccHHHHHHHHHHHcCCChHHH
Q 005747 280 NFSVSFLKEEEAWSLFKKMAGDYVE--GNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 280 ~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~I~~~~~glPlai 326 (679)
.+++++++.+|+..++.-+...... ...-+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887652211 1233456666666779998543
No 420
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.58 E-value=0.036 Score=50.71 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
...+++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887643
No 421
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.33 Score=53.05 Aligned_cols=171 Identities=23% Similarity=0.257 Sum_probs=88.2
Q ss_pred cccccchHHHHHH---HHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH
Q 005747 129 YEAFESRMSILNE---ITDALKNGD---------VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 129 ~~~~~gr~~~~~~---l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 196 (679)
.....|.++.+++ ++++|++.. ++=|.++|++|.|||.||++++-...+- | ...|...-++
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FVe 221 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFVE 221 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhhh
Confidence 3455677665554 555665432 4568899999999999999999987764 2 1222110000
Q ss_pred HHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc------------cch----hhcCCCCCCCC--CC
Q 005747 197 KIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN------------LDL----KAAGIPHGDDH--RG 258 (679)
Q Consensus 197 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------------~~~----~~l~~~~~~~~--~g 258 (679)
+. .| -...++..+..+-++.-+++|++|.++.. +.+ .++........ .|
T Consensus 222 -----mf--VG------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 222 -----MF--VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred -----hh--cC------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 00 01 11234445555555556899999987532 112 22222221122 23
Q ss_pred cEEEEeecCcchhc----ccCCCcceEEecCCChHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCCh
Q 005747 259 CKVLLTARSLDTLS----TKMDSQKNFSVSFLKEEEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 259 s~iivTtR~~~v~~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glP 323 (679)
-.|+-.|-..+|+. +...-.+.+.++..+-..-.++++-.+.... ...++.. |++.+-|.-
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfs 355 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFS 355 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcc
Confidence 23333344444542 1222345666666665666666665544222 2223222 666666643
No 422
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.57 E-value=0.054 Score=55.62 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=42.8
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-+...++|.++.+..|...+.+....-|.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34567899999999988888788888888999999999999999987643
No 423
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.56 E-value=0.1 Score=50.72 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=49.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC-------------------
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFD------------------- 211 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~------------------- 211 (679)
.+++.|.|.+|+|||+++.++......+ .-..++||+...+ .+++.+.+. .++....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 4699999999999999999877554221 0135788887654 355544432 4432210
Q ss_pred --ccchhHHHHHHHHHHHcCCceEEEEecCC
Q 005747 212 --EESESGRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 212 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
..+.......+.+.+...+...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 01122334445555544455788899763
No 424
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.56 E-value=0.042 Score=52.72 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=39.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE-------cCCCcCHHHH--HHHHHHHhCCCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE-------VSESQDIRKI--QREIADKLGLKFD 211 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------v~~~~~~~~l--~~~i~~~l~~~~~ 211 (679)
+...|.++||+|.||||..|.++.+...++.-..++=.+ ..-+.|+++. .++..++.+....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 356788999999999999999999887653322222221 1223355554 4566777655443
No 425
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.55 E-value=0.056 Score=48.67 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 139 LNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 139 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+++|.+++.+ +++.++|.+|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5566666654 799999999999999999998764
No 426
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.55 E-value=0.038 Score=51.43 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
-.|++|+|++|+|||||.+.+..-.... .+.+||+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g 63 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDG 63 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECC
Confidence 4689999999999999999997655433 45666643
No 427
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.55 E-value=0.13 Score=52.38 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=26.2
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
.+...+|+|.|.+|+||||++..+.......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998876543
No 428
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.55 E-value=0.12 Score=54.81 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCC-------CccchhH-----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKF-------DEESESG----- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~-------~~~~~~~----- 217 (679)
.-..++|.|..|+|||||++.++...... ..+++..-.......++.+.+...-+... ...+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999998765432 23444333444455665555544322211 1111111
Q ss_pred -HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 -RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +|+++|+++||+...
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233444553 589999999998653
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.55 E-value=0.3 Score=47.55 Aligned_cols=53 Identities=26% Similarity=0.363 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
-.++.|.|.+|.||||+|.++....... -..++|++... +.+++.+. +++++.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFGM 72 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhCC
Confidence 4689999999999999999877654322 35678887744 34444433 444543
No 430
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.53 E-value=0.061 Score=55.19 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...++|.++.+..++-.+.+....-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35678999999888766666666667899999999999999998765
No 431
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.53 E-value=0.24 Score=52.69 Aligned_cols=91 Identities=21% Similarity=0.373 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccchhH-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLK-------FDEESESG----- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~----- 217 (679)
-+-++|.|.+|+|||||+.++........ -+.++++-+.+. ..+.++.+++...=... ....+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999887765432 245777766543 34566666665432221 11111111
Q ss_pred -HHHHHHHHHH--cCCceEEEEecCCCc
Q 005747 218 -RARRLHDRLK--KEKRILVILDNIWGN 242 (679)
Q Consensus 218 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 242 (679)
.+..+-++++ +|+++|+++|++...
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1334555552 589999999998543
No 432
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.53 E-value=0.058 Score=54.77 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=33.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQ 199 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 199 (679)
+++.+.|-||+||||+|.+.+-....++ ..+.-++.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6899999999999999998888766542 346666666655555444
No 433
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.52 E-value=0.037 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...|.++|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 434
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.21 Score=50.69 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=34.0
Q ss_pred cccchHHHHHHHHHHhc---------C---CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 131 AFESRMSILNEITDALK---------N---GDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~---------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
.+.|-.+.++-|.++.. . ..=+-|..+|++|.|||-||++|+..-...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 44566666666655542 1 123568899999999999999999887643
No 435
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.51 E-value=0.0011 Score=61.64 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=72.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
+..++||++.|++..+...|+-++.|..|+++.|.+.. +..++++..++.+++..|+.+..|.+.+.+++++++++..|
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 57889999999988888888888999999999998877 67889999999999999999999999999999999999887
Q ss_pred cCc
Q 005747 519 REL 521 (679)
Q Consensus 519 ~~~ 521 (679)
.+.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 643
No 436
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.066 Score=54.29 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=37.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.+++.+.|.|||||||+|.+.+-.....+ ..+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999877766553 44777777776666665544
No 437
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.50 E-value=0.25 Score=50.22 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHH----hCCC----------CCccch
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADK----LGLK----------FDEESE 215 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~----l~~~----------~~~~~~ 215 (679)
-+.++|.|..|+|||+|++++.+... -+.++|+-+.+. ....+++.++-+. .+.. ....+.
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 45799999999999999999998643 356788877654 3455555554321 1111 011111
Q ss_pred hH------HHHHHHHHHH-cCCceEEEEecCCC
Q 005747 216 SG------RARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 216 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
.. ....+-++++ .|+.+|+++|++..
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 11 1223444443 58899999999843
No 438
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.49 E-value=0.25 Score=52.17 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=57.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc------C-----CCCCeEEEEEcCCCcCHHHHHHHHHHHhC-CCC-------C
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN------D-----KLFDQVVFSEVSESQDIRKIQREIADKLG-LKF-------D 211 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~------~-----~~F~~~~wv~v~~~~~~~~l~~~i~~~l~-~~~-------~ 211 (679)
-+-++|.|-+|+|||||+.++.+.... . +.-..++++-+.+.....+.+...+..-+ ... .
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 456899999999999999999987641 0 11115667777776555555555555544 221 1
Q ss_pred ccchhH------HHHHHHHHHH--cCCceEEEEecCCC
Q 005747 212 EESESG------RARRLHDRLK--KEKRILVILDNIWG 241 (679)
Q Consensus 212 ~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 241 (679)
.++... .+..+-+++. +|+++|+++||+..
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 2334556666 58999999999854
No 439
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.48 E-value=0.0027 Score=64.26 Aligned_cols=224 Identities=17% Similarity=0.099 Sum_probs=128.7
Q ss_pred CceEEEEeecccC---CCCCccccCCCCCCEEEcCCCC-CCC--chh-hcCCCCCcEEEcccc-ccccc--chhhhcCcC
Q 005747 440 EQVRVINVSYMNL---LSLPSSLGLLSNLQTLSLYNCK-LLD--ITV-IRDLKKLEVLCLRGS-DIKRL--PVEVGELTL 509 (679)
Q Consensus 440 ~~L~~L~l~~n~l---~~lp~~~~~l~~L~~L~L~~n~-l~~--~~~-~~~l~~L~~L~L~~n-~i~~l--p~~i~~l~~ 509 (679)
..|+.|.+.++.= +.+-....++++++.|.+.+|. +++ ..+ -..+++|++|+|..+ .|+.. -.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4678888887643 2344446789999999999987 444 223 346789999999984 66632 223357899
Q ss_pred CCEEeccCCcCcccc-ChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEE-eecCCCCCCcc---c
Q 005747 510 LRLLDLRDCRELEII-PPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQ-IQDVNTLPRGL---F 584 (679)
Q Consensus 510 L~~L~l~~n~~~~~l-p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~n~l~~lp~~~---~ 584 (679)
|.+|+++.|..+..- -...+.++.+|+.+.+.+|.-...+. +...=+....+-.+++. +|.++...-.. .
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-----l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-----LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH-----HHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 999999998754431 11224566778888777653211110 00000122234444443 55566433221 5
Q ss_pred ccccceeEEEEcCc------cccccccccccEEEEecCccccch--HHHHHHhcccceeecccccccccccc-ccccCcC
Q 005747 585 LEKLERYKILIGGV------WGWEYADIWCREFKIDLDSKIRLK--DGLILKLQGIEDLWLSDLEERDVNYF-VNELDKV 655 (679)
Q Consensus 585 l~~L~~L~l~~~~~------~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~l~~i-~~~l~~~ 655 (679)
+..|+.|..+++.. +.+......++.+.+.....+... ..+....+.|+.|++..|. ...+- ...+ ..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~--~~~d~tL~sl-s~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG--LITDGTLASL-SR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc--eehhhhHhhh-cc
Confidence 67788887766542 222333345666666544332211 2233345778888888775 22111 1222 24
Q ss_pred CCCCccEEEEecCcCc
Q 005747 656 GPSQLKHLYIRGSHLT 671 (679)
Q Consensus 656 ~~~~L~~L~l~~n~l~ 671 (679)
..|.|+.|.+++|.+.
T Consensus 370 ~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELI 385 (483)
T ss_pred CCchhccCChhhhhhh
Confidence 5788999999988754
No 440
>PRK01184 hypothetical protein; Provisional
Probab=94.47 E-value=0.21 Score=46.74 Aligned_cols=22 Identities=36% Similarity=0.749 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
.+|+|+|+.|+||||+++ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 441
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.47 E-value=0.19 Score=53.15 Aligned_cols=91 Identities=21% Similarity=0.355 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCC-------CCccchhH-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLK-------FDEESESG----- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~----- 217 (679)
-+-++|.|.+|+|||+|+.++....... +-+.++|+-+.... ...++.+++...-... ....+...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 4578999999999999999988875432 24677888776543 4566666655432211 11111111
Q ss_pred -HHHHHHHHHH--cCCceEEEEecCCCc
Q 005747 218 -RARRLHDRLK--KEKRILVILDNIWGN 242 (679)
Q Consensus 218 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 242 (679)
.+..+-++++ +|+++|+++||+...
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2334556665 489999999998653
No 442
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.47 E-value=1.5 Score=43.89 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhccCC-------------------CCCeEEEEEcCC-CcC
Q 005747 136 MSILNEITDALKNGDV-NTLGIYGIGGIGKTTLAKEVARRAENDK-------------------LFDQVVFSEVSE-SQD 194 (679)
Q Consensus 136 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v~~-~~~ 194 (679)
...++.+...+..+++ +...++| |+||+++|..++...--.+ .+..+.|+.-.. ...
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~ 85 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIK 85 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCC
Confidence 3445666666666654 4667777 5899999998887542111 111122332111 111
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecC-
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARS- 267 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~- 267 (679)
+ +.+..+...+. .+++-++|+|++... .....+...+....+++.+|++|.+
T Consensus 86 i---------------------dqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~ 144 (290)
T PRK07276 86 T---------------------DTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDE 144 (290)
T ss_pred H---------------------HHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 1 12222222221 255678999998765 3455555555444556667776655
Q ss_pred cchhcccCCCcceEEecCCChHHHHHHHH
Q 005747 268 LDTLSTKMDSQKNFSVSFLKEEEAWSLFK 296 (679)
Q Consensus 268 ~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~ 296 (679)
..++.........+.+.+ +.++..+.+.
T Consensus 145 ~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 145 NKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred hhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 445555445566778866 6666666664
No 443
>PRK06217 hypothetical protein; Validated
Probab=94.43 E-value=0.033 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.|.|.|.+|+||||+|+.+......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999988653
No 444
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.43 E-value=0.13 Score=55.58 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=63.9
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHH-HHHHHHHHhccCCCCCeEEEEEcCCCcCH--HHHHHHHHHHhCCCCCc-----
Q 005747 141 EITDALKNGDVNTLGIYGIGGIGKTT-LAKEVARRAENDKLFDQVVFSEVSESQDI--RKIQREIADKLGLKFDE----- 212 (679)
Q Consensus 141 ~l~~~L~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~i~~~l~~~~~~----- 212 (679)
+|++.+.+ .+||.|+|..|.|||| |+|.+|.+--.. .--|.+.++.-+ ..+.+.+++.++.....
T Consensus 363 ~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edGY~~-----~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 363 QLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDGYAD-----NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhccccc-----CCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 34444433 4799999999999998 777777663222 124555665433 34566667776543211
Q ss_pred -----cc----------hh-HHHHHHHHHHHcCCceEEEEecCCCccc----hhhcCCCCCCCCCCcEEEEeecC
Q 005747 213 -----ES----------ES-GRARRLHDRLKKEKRILVILDNIWGNLD----LKAAGIPHGDDHRGCKVLLTARS 267 (679)
Q Consensus 213 -----~~----------~~-~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~~~~~~gs~iivTtR~ 267 (679)
.. +- -.-+.+.+..+ .|--.||+|.+.+... +-.+..........-|+||||-.
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L-~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDL-DKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhh-hheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 00 00 01122333333 4556899999865421 11111111122346789999875
No 445
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.43 E-value=0.036 Score=51.43 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 446
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.41 E-value=0.27 Score=49.97 Aligned_cols=88 Identities=25% Similarity=0.387 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcC-CCcCHHHHHHHHHHHhCCCC-------CccchhH-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVS-ESQDIRKIQREIADKLGLKF-------DEESESG----- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~-------~~~~~~~----- 217 (679)
-..++|+|..|.|||||.+.+...... +...+..+. ...+..++.......-+... ..++...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999999999876542 233333333 33455665555554432211 1111111
Q ss_pred -HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 -RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +||.+|+++||+...
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1223344442 589999999998543
No 447
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.39 E-value=0.11 Score=54.35 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH--HHHHHHHhCCCCCccc
Q 005747 137 SILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI--QREIADKLGLKFDEES 214 (679)
Q Consensus 137 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l--~~~i~~~l~~~~~~~~ 214 (679)
...+.+++.+.......+.|.|.||.|||+|.+.+.+..+.. -. .+-+..+.......+ -..+-+.++.+.....
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~--~~-~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR--GK-KVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc--cc-eEEEecchHHHHHhccCCcchHHhcCccccccc
Confidence 345566666666667889999999999999999999887653 12 233333332222222 2334445554433221
Q ss_pred hh----HHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 215 ES----GRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 215 ~~----~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.. .......+.+. +--+||+|.+.-.
T Consensus 85 ~~~~~~~~~~~~~~~l~--~~~~lIiDEism~ 114 (364)
T PF05970_consen 85 KSQCKISKNSRLRERLR--KADVLIIDEISMV 114 (364)
T ss_pred cccccccccchhhhhhh--hheeeecccccch
Confidence 11 11223333343 2358999998643
No 448
>PRK05922 type III secretion system ATPase; Validated
Probab=94.37 E-value=0.17 Score=53.47 Aligned_cols=89 Identities=18% Similarity=0.340 Sum_probs=51.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHHHHhCCCC-------CccchhH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIADKLGLKF-------DEESESG---- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~-------~~~~~~~---- 217 (679)
.-..++|.|..|+|||||.+.+..... .+...++.+.. .....+.+.+......... ...+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345689999999999999999987543 23334433333 2334455555443332221 1111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-++++ +|+++|+++||+...
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1234455553 589999999998653
No 449
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.37 E-value=0.043 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998843
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.029 Score=51.60 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999886643
No 451
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.36 E-value=0.045 Score=50.81 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
...+|+|.|.+|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998754
No 452
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.36 E-value=0.12 Score=52.88 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
+.+.|+.|.||||+++.+.........+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 5789999999999999999887532212 345555444
No 453
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.35 E-value=0.073 Score=54.02 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=38.9
Q ss_pred cccccchHHHHHH---HHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHHHhccCCCC
Q 005747 129 YEAFESRMSILNE---ITDALKNGD--VNTLGIYGIGGIGKTTLAKEVARRAENDKLF 181 (679)
Q Consensus 129 ~~~~~gr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 181 (679)
..+++|..+..+. +++++.+.. -+.|.+.|++|.|||+||..+++....+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 5688998766554 667776554 5899999999999999999999998876555
No 454
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.34 E-value=0.25 Score=45.10 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=61.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEE---EcCCCcCHHHHHHHHH---HHhCCC--CCccch---hH--
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFS---EVSESQDIRKIQREIA---DKLGLK--FDEESE---SG-- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~v~~~~~~~~l~~~i~---~~l~~~--~~~~~~---~~-- 217 (679)
...|-|++..|.||||.|..++-+..... + .++.+ .-.........++... .+.+.. +...+. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-K-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788899999999999999888866432 2 23333 2222233333443320 001111 111111 11
Q ss_pred --HHHHHHHHHHcCCceEEEEecCCCcc-----chhhcCCCCCCCCCCcEEEEeecCc
Q 005747 218 --RARRLHDRLKKEKRILVILDNIWGNL-----DLKAAGIPHGDDHRGCKVLLTARSL 268 (679)
Q Consensus 218 --~~~~l~~~l~~~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~ 268 (679)
......+.+..+.-=++|||.+-... ..+.+...+....++.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233444444555699999975332 2223333333444567899999974
No 455
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.32 E-value=0.35 Score=42.95 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=64.6
Q ss_pred hhhHHH-HHHHHHHhhhHHHHhhhc----ch-----------hhhhHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 005747 2 AEIILD-IVAEVVKCLAPPAYRQIG----NL-----------RDKRKVDEAERKGEEIEENVENWLARANNVIEDADEFT 65 (679)
Q Consensus 2 a~~~~~-~~~~~~~~l~~~~~~~~~----~~-----------~i~~~l~~a~~~~~~~~~~v~~Wl~~l~~~~yd~ed~l 65 (679)
||.+.| ++|.+++-|+..+.+... |- ++..++++.+.-..+.|..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 455544 566666666654444332 21 66667777776555556665778889999999999999
Q ss_pred hhHHhhccccccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 005747 66 NDEATANKHCFKGLCPNLKTRCQLSKEAVRLMEAIVKV 103 (679)
Q Consensus 66 d~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~i 103 (679)
+.+..-+ ++++...++.+++|+++.+.+...
T Consensus 83 ~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 83 EKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 8764322 356777888999999999888765
No 456
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.32 E-value=0.4 Score=49.01 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=33.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI 198 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 198 (679)
.++..+|+|.|.+|+||||++..+.......+.=-.++=++.+..++-..+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gal 103 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSI 103 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhh
Confidence 456789999999999999999998887764422122333344444433333
No 457
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.31 E-value=0.38 Score=51.35 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhcc-----CCCCCeEEEEEcCCCcCHHHHHHHHHHHhC-CCC-------Cccchh
Q 005747 151 VNTLGIYGIGGIGKTTLA-KEVARRAEN-----DKLFDQVVFSEVSESQDIRKIQREIADKLG-LKF-------DEESES 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~-~~~-------~~~~~~ 216 (679)
-+-++|.|..|+|||+|| ..+.+.... .+.-+.++|+-+.+....-.-+.+.++.-+ ... ..++..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 666666422 123456788888776543222333333333 211 111111
Q ss_pred H------HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 217 G------RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 217 ~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
. ....+-+++. +|+.+|+|+||+...
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1223444443 589999999998653
No 458
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.32 Score=47.27 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=40.9
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 125 PNKDYEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
|...+.++-|-+..+++|.+... . ...+-|.++|.+|.|||-||++|+|.-...
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 33445667788888888887764 1 135678899999999999999999986644
No 459
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.28 E-value=0.11 Score=53.55 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 132 FESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
++|+++.+..+...+..+ +-+.+.|.+|+|||+||+.++...... .++|.+.......++.-.
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCc
Confidence 678888888777666543 357789999999999999999987633 456777777666665443
No 460
>COG4240 Predicted kinase [General function prediction only]
Probab=94.28 E-value=0.24 Score=46.41 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=53.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCC-----CCCccchhHHHHHH
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGL-----KFDEESESGRARRL 222 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~-----~~~~~~~~~~~~~l 222 (679)
.++.=+++|.|+-|.||||++..+++....+.- ..+...+..+-+-...-...++++... ......+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 345668999999999999999999999877643 467777776655444445555555421 11122334455566
Q ss_pred HHHHHcCC
Q 005747 223 HDRLKKEK 230 (679)
Q Consensus 223 ~~~l~~~k 230 (679)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 66666555
No 461
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.28 E-value=0.14 Score=53.47 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 130 EAFESRMSILNEITDALKN--------------GDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..++|.++.++.+..++.+ ...+-|.++|++|+|||++|+.+......
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567888888888777642 01367899999999999999999998653
No 462
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.042 Score=48.81 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999888776
No 463
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.26 E-value=0.055 Score=54.87 Aligned_cols=43 Identities=21% Similarity=0.426 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
..++|+|.|-||+||||.+..+..-....+ ..+.-|+.....+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g--~kVLliD~D~q~~ 45 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMG--QKILIVGCDPKAD 45 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEecccccc
Confidence 357888899999999999988777665432 2466666655433
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.25 E-value=0.035 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
++|+|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 465
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.23 E-value=0.12 Score=54.54 Aligned_cols=89 Identities=18% Similarity=0.311 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHHHHhCCC-------CCccchhH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIADKLGLK-------FDEESESG---- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 217 (679)
.-..++|.|..|+|||||++.+..... .+...+..+.. ...+.++..+....-... ....+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999987543 34445544443 334445555543211110 00111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +|+++|+++||+...
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 1233445553 588999999998643
No 466
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.23 E-value=0.15 Score=48.56 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
....|+|+|.+|+|||||...+....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 44679999999999999999998764
No 467
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.22 E-value=0.26 Score=52.06 Aligned_cols=89 Identities=24% Similarity=0.414 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CccchhH----
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLKF-------DEESESG---- 217 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~---- 217 (679)
.-..++|.|..|+|||||.+.+++... -+.++++-+.+.. ...++....+..-+... ..++...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999998754 2566777665543 44444444332211111 1111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-++++ +|+++|+++|++...
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233445553 589999999998643
No 468
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.21 E-value=0.3 Score=52.08 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCC--CeEEEEEcCCC-cCHHHHHHHHHHHhCCCC-------Cccchh----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLF--DQVVFSEVSES-QDIRKIQREIADKLGLKF-------DEESES---- 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~-------~~~~~~---- 216 (679)
-+-++|.|..|+|||||+.++.+.....+.+ ..++++-+.+. ....++...+...=.... ...+..
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 3568999999999999999999876532112 14566666543 345666666553322211 111111
Q ss_pred --HHHHHHHHHHH--cCCceEEEEecCCCc
Q 005747 217 --GRARRLHDRLK--KEKRILVILDNIWGN 242 (679)
Q Consensus 217 --~~~~~l~~~l~--~~k~~LlVlDdv~~~ 242 (679)
-.+..+-++++ +|+++|+++||+...
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 12345666666 589999999998543
No 469
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.20 E-value=0.1 Score=50.75 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc-----CCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN-----DKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
+..|+|++|.||||++..+...... ...-...+-++...+..+..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 7889999999999877777666511 1223444444444444444444443
No 470
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.18 E-value=0.036 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 471
>PLN02165 adenylate isopentenyltransferase
Probab=94.17 E-value=0.06 Score=54.48 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=26.0
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 147 KNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 147 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+....+|+|+|+.|+||||||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 455667999999999999999999998854
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.17 E-value=0.59 Score=47.74 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
...+++++|++|+||||++..++...... -..+..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 46799999999999999999999887643 123455544
No 473
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.16 E-value=0.079 Score=53.67 Aligned_cols=76 Identities=21% Similarity=0.407 Sum_probs=54.6
Q ss_pred ccccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-c-C-----HH
Q 005747 130 EAFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-Q-D-----IR 196 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~-~-----~~ 196 (679)
.+|+|-++.++++++.+. +..-+++.++|+.|.||||||..+.+-.+. | .+|.-...+ . + +.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 478999999999999986 456789999999999999999999887654 2 334322111 1 1 34
Q ss_pred HHHHHHHHHhCCCC
Q 005747 197 KIQREIADKLGLKF 210 (679)
Q Consensus 197 ~l~~~i~~~l~~~~ 210 (679)
++-+.+.+.++...
T Consensus 136 ~~r~~~~~~~~~~i 149 (358)
T PF08298_consen 136 ELRREFEDELGIRI 149 (358)
T ss_pred hHHHHHHHHhCccc
Confidence 55566666776643
No 474
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.16 E-value=0.041 Score=50.87 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 475
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.15 E-value=0.055 Score=51.73 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=27.5
Q ss_pred HhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 145 ALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 145 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+...++++|+++|..|+|||||...+.....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988753
No 476
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.14 E-value=0.16 Score=46.68 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
++.|.|.+|+||||+|..+...... .++|+.-...++. +..+.|.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~~-e~~~ri~ 47 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFDD-EMAARIA 47 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCChH-HHHHHHH
Confidence 6899999999999999999876432 2445554444443 3444443
No 477
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.057 Score=51.33 Aligned_cols=26 Identities=46% Similarity=0.578 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|.+|.|||||++.+.--.+
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 35899999999999999999986443
No 478
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.14 E-value=0.22 Score=48.69 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
+|+|.|.+|+||||+++.+......
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987653
No 479
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.13 E-value=0.32 Score=51.56 Aligned_cols=91 Identities=20% Similarity=0.367 Sum_probs=57.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCC-------CccchhH-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKF-------DEESESG----- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~-------~~~~~~~----- 217 (679)
-+-++|.|.+|+|||||+.++........ -+.++++-+.+. ..+.++++++...-.... ...+...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999887754322 246777766543 345666666654322211 1111111
Q ss_pred -HHHHHHHHHH--cCCceEEEEecCCCc
Q 005747 218 -RARRLHDRLK--KEKRILVILDNIWGN 242 (679)
Q Consensus 218 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 242 (679)
.+..+-++++ +|+++|+++||+...
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2334556664 478999999998653
No 480
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.12 E-value=0.17 Score=54.46 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeE-EEEEcCCCc-CHHHHHHHHHHHh-CCCCCccchh-----HHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQV-VFSEVSESQ-DIRKIQREIADKL-GLKFDEESES-----GRARRL 222 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~v~~~~-~~~~l~~~i~~~l-~~~~~~~~~~-----~~~~~l 222 (679)
-+-..|+|.+|+|||||++.+++..... +-++. +++-|.+-. .+.++.+.+-..+ ....+..... ..+..+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999876432 22333 344444432 2333332220000 0111111111 122233
Q ss_pred HHHH-HcCCceEEEEecCCCc
Q 005747 223 HDRL-KKEKRILVILDNIWGN 242 (679)
Q Consensus 223 ~~~l-~~~k~~LlVlDdv~~~ 242 (679)
-+++ ..|+.+||++|++...
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 4444 3589999999998543
No 481
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.11 E-value=0.046 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999977543
No 482
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.09 E-value=0.041 Score=49.20 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|.|.|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 483
>PF13479 AAA_24: AAA domain
Probab=94.09 E-value=0.15 Score=48.88 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
.+.|+|.+|+||||+|..+ +..+++++...
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 5789999999999999876 34566666554
No 484
>PRK14531 adenylate kinase; Provisional
Probab=94.08 E-value=0.2 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+.|.|.|++|+||||+++.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998864
No 485
>PRK13947 shikimate kinase; Provisional
Probab=94.06 E-value=0.045 Score=50.51 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.|.|+|++|+||||+|+.+++....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998754
No 486
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.05 E-value=0.28 Score=56.57 Aligned_cols=178 Identities=22% Similarity=0.240 Sum_probs=87.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc---c-----------CCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE---N-----------DKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEES 214 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~-----------~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~ 214 (679)
.+.+++.|.|+.+.||||+.+.+.-..- . -..|+ .++..+....++..-......
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~---------- 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSG---------- 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHH----------
Confidence 3457899999999999999999865410 0 01122 223333333222221111110
Q ss_pred hhHHHHHHHHHHHcCCceEEEEecCCCccch---hhc----CCCCCCCCCCcEEEEeecCcchhcccCCCcc--eEEecC
Q 005747 215 ESGRARRLHDRLKKEKRILVILDNIWGNLDL---KAA----GIPHGDDHRGCKVLLTARSLDTLSTKMDSQK--NFSVSF 285 (679)
Q Consensus 215 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~--~~~l~~ 285 (679)
.......+...+ ..+-|+++|......+. ..+ ...+ ...|+.+|+||...+++........ ...+.
T Consensus 394 ~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 394 HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 011112222222 36789999998654221 112 1122 1247889999998776532211111 11121
Q ss_pred CChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHHh
Q 005747 286 LKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQL 349 (679)
Q Consensus 286 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~l 349 (679)
++. +......+...+... ...|-+|++++ |+|-.+.--|..+.. .+..+...+++.+
T Consensus 469 ~d~-~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l 525 (782)
T PRK00409 469 FDE-ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASL 525 (782)
T ss_pred Eec-CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHH
Confidence 111 111100000011111 24567777776 788888888877765 4445566655554
No 487
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.04 E-value=0.22 Score=52.50 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCC-------CccchhH------
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKF-------DEESESG------ 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~-------~~~~~~~------ 217 (679)
-..++|.|..|+|||||++.+...... ...++...-.......++.+..+..-+... ..++...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 457999999999999999988876532 222333222333345555554443322221 1111111
Q ss_pred HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 ~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +++++|+++||+...
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1233445553 588999999998653
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.04 E-value=0.045 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|+|++|+|||||++.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998753
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.02 E-value=0.04 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998743
No 490
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.34 Score=51.44 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCC-------CccchhH-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKF-------DEESESG----- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~-------~~~~~~~----- 217 (679)
-..++|+|..|+|||||++.+..... .+.+++..+... .+..++...+...-+... ..++...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999976432 234444434332 245555555544332221 1111111
Q ss_pred -HHHHHHHHHH-cCCceEEEEecCCCc
Q 005747 218 -RARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 218 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
.+..+-+++. +|+++|+++||+...
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 1233444553 589999999998643
No 491
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.02 E-value=0.11 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
|.|.|++|+||||+|+.+++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 492
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.00 E-value=0.079 Score=54.24 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=38.1
Q ss_pred CcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 128 DYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+...++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456778999998887755544444558899999999999999998765
No 493
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.00 E-value=0.23 Score=50.27 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=41.4
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHH
Q 005747 131 AFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKI 198 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l 198 (679)
.++=..+....++.++..+ +-|.|.|..|+||||+|+.++...... .+.|.++...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 3444444556677676543 468999999999999999999987633 345566555554443
No 494
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.99 E-value=0.0032 Score=63.74 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=70.0
Q ss_pred CceEEEEeecccC-C--CCCccccCCCCCCEEEcCCCCCCCchhh----cCCCCCcEEEcccc-cccc--cchhhhcCcC
Q 005747 440 EQVRVINVSYMNL-L--SLPSSLGLLSNLQTLSLYNCKLLDITVI----RDLKKLEVLCLRGS-DIKR--LPVEVGELTL 509 (679)
Q Consensus 440 ~~L~~L~l~~n~l-~--~lp~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~L~~n-~i~~--lp~~i~~l~~ 509 (679)
++|.+|+++++.- + .+..-+.+++.++.+.+.||.-.+...+ +...-+-.+|+.++ .++. +...-..+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 3555555555432 1 1222344555555555555543222222 12233444454444 2332 1111234566
Q ss_pred CCEEeccCCcCccccChhh-hcCCcccceeecCCCCCCcchhhhcccccccc-cccCCCcEEEEEeecCC---CCCCcc-
Q 005747 510 LRLLDLRDCRELEIIPPNV-LSKLSHLEELYMGPRSFDKWEVEVEGVKNASL-HELKHLISLELQIQDVN---TLPRGL- 583 (679)
Q Consensus 510 L~~L~l~~n~~~~~lp~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~---~lp~~~- 583 (679)
|+.|+.++|...+..+-.. ..+.++|+.|-+..++.- ++.--..+ .+.+.|+.+++...... ++-...
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f------sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF------SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh------hhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 7777777766544333222 234567777777776531 11111111 23456666766654432 122212
Q ss_pred cccccceeEEEEcC
Q 005747 584 FLEKLERYKILIGG 597 (679)
Q Consensus 584 ~l~~L~~L~l~~~~ 597 (679)
..+.|+.|.++++.
T Consensus 370 ~C~~lr~lslshce 383 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCE 383 (483)
T ss_pred CCchhccCChhhhh
Confidence 56667777666544
No 495
>PRK13949 shikimate kinase; Provisional
Probab=93.98 E-value=0.053 Score=49.89 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+-|.|+|+.|+||||+++.++....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999875
No 496
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.97 E-value=0.16 Score=55.89 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=44.6
Q ss_pred cccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 129 YEAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
...++|+...++++.+.+. ......|.|+|..|+|||++|+.+....... -...+.|++..-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 4567898888888887775 3344568899999999999999999875422 123455666543
No 497
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.95 E-value=0.052 Score=48.90 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
.++++|+|+.|+|||||+..+....+.+++ .++.|.-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~--rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY--RVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc--EEEEEEe
Confidence 479999999999999999999999887632 4444433
No 498
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.95 E-value=0.58 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.+-|.++|++|.|||.||++++.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 557889999999999999999998764
No 499
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.94 E-value=0.095 Score=47.16 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.4
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 147 KNGDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 147 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
...+..||.+.|.+|.||||+|.++++.....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34556799999999999999999999987654
No 500
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.92 E-value=0.22 Score=48.81 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=55.9
Q ss_pred cccchHHHHHHHHHHhc----C---CCccEEEEEcCCCCcHHHHHHHHHHHhccC---CCCCeEEEEEcCCCcCHHHHHH
Q 005747 131 AFESRMSILNEITDALK----N---GDVNTLGIYGIGGIGKTTLAKEVARRAEND---KLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
.++|.--.++.++..+. + .+.=|++.+|.+|+||.-+++.+++..... ..|. ..||..-..+....+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V-~~fvat~hFP~~~~ie- 160 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV-HHFVATLHFPHASKIE- 160 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH-HHhhhhccCCChHHHH-
Confidence 34565555666666654 2 334589999999999999999999875432 1111 1111111111111110
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
.-..+...++...+..-++-|+|+|+++..
T Consensus 161 ------------~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 161 ------------DYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ------------HHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 011223344555555567899999999765
Done!