Query 005747
Match_columns 679
No_of_seqs 672 out of 3521
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9E-42 3.1E-46 376.5 21.2 282 133-432 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-35 9.1E-40 359.2 25.6 295 125-431 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3.2E-34 1.1E-38 319.4 19.8 262 132-424 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-31 3.7E-36 300.6 25.2 287 127-428 121-449 (591)
5 4fcg_A Uncharacterized protein 99.9 1.6E-24 5.6E-29 223.2 13.7 223 440-675 81-318 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-23 9.4E-28 212.7 12.2 223 440-676 50-287 (313)
7 1xku_A Decorin; proteoglycan, 99.9 2E-22 7E-27 208.2 16.8 223 440-676 52-281 (330)
8 2ft3_A Biglycan; proteoglycan, 99.9 3.1E-22 1.1E-26 207.0 13.3 222 440-676 54-282 (332)
9 2z80_A TOLL-like receptor 2, v 99.9 6.9E-22 2.4E-26 206.2 15.4 223 440-674 52-317 (353)
10 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.7E-26 211.7 18.1 195 440-642 32-260 (477)
11 4fcg_A Uncharacterized protein 99.9 6.3E-22 2.2E-26 203.8 13.3 204 461-677 79-297 (328)
12 3zyi_A Leucine-rich repeat-con 99.9 5E-22 1.7E-26 214.6 13.0 222 440-672 75-304 (452)
13 3zyj_A Leucine-rich repeat-con 99.9 5.6E-22 1.9E-26 213.4 13.2 221 440-671 64-292 (440)
14 2z66_A Variable lymphocyte rec 99.9 3.5E-22 1.2E-26 204.2 10.9 222 440-673 28-263 (306)
15 1ogq_A PGIP-2, polygalacturona 99.9 2E-22 7E-27 206.2 8.8 221 440-674 76-308 (313)
16 3o6n_A APL1; leucine-rich repe 99.9 1E-21 3.5E-26 208.0 13.6 132 440-579 45-180 (390)
17 4eco_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 224.8 10.2 232 440-677 206-507 (636)
18 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-21 8.6E-26 195.6 14.1 217 443-672 14-239 (285)
19 4ecn_A Leucine-rich repeat pro 99.9 4.1E-21 1.4E-25 220.0 16.7 231 440-676 448-746 (876)
20 2z80_A TOLL-like receptor 2, v 99.8 1.4E-20 4.7E-25 196.4 18.7 223 443-677 34-296 (353)
21 3oja_B Anopheles plasmodium-re 99.8 2E-21 7E-26 217.2 13.2 229 440-675 75-318 (597)
22 3rgz_A Protein brassinosteroid 99.8 3.3E-21 1.1E-25 221.9 14.2 130 440-577 418-551 (768)
23 4fmz_A Internalin; leucine ric 99.8 1.5E-20 5.1E-25 195.7 17.4 148 440-600 66-213 (347)
24 3zyi_A Leucine-rich repeat-con 99.8 7.4E-21 2.5E-25 205.4 15.2 223 441-677 55-285 (452)
25 3zyj_A Leucine-rich repeat-con 99.8 8.3E-21 2.8E-25 204.2 14.8 223 441-677 44-274 (440)
26 3rgz_A Protein brassinosteroid 99.8 8E-21 2.8E-25 218.6 15.4 152 440-599 394-551 (768)
27 1xku_A Decorin; proteoglycan, 99.8 9.9E-21 3.4E-25 195.6 14.5 221 440-677 31-259 (330)
28 4eco_A Uncharacterized protein 99.8 2.7E-21 9.4E-26 217.4 11.1 226 440-677 305-585 (636)
29 1h6u_A Internalin H; cell adhe 99.8 1.8E-20 6.1E-25 191.2 15.7 194 440-675 41-234 (308)
30 2o6q_A Variable lymphocyte rec 99.8 2E-20 7E-25 187.2 15.8 200 440-673 16-220 (270)
31 3o6n_A APL1; leucine-rich repe 99.8 7.5E-21 2.6E-25 201.3 13.2 223 440-671 69-352 (390)
32 3o53_A Protein LRIM1, AGAP0063 99.8 3.5E-21 1.2E-25 197.5 9.7 211 440-671 34-250 (317)
33 2id5_A Lingo-1, leucine rich r 99.8 1.7E-20 5.9E-25 204.2 15.7 224 440-675 80-313 (477)
34 3v47_A TOLL-like receptor 5B a 99.8 1.5E-20 5.1E-25 203.4 14.7 86 440-525 79-171 (455)
35 3oja_B Anopheles plasmodium-re 99.8 2.4E-20 8E-25 208.6 16.6 220 440-671 99-358 (597)
36 1p9a_G Platelet glycoprotein I 99.8 1.5E-20 5.2E-25 189.8 13.6 195 440-671 10-208 (290)
37 3oja_A Leucine-rich immune mol 99.8 5.1E-21 1.7E-25 207.9 10.6 211 440-671 34-250 (487)
38 3v47_A TOLL-like receptor 5B a 99.8 1.5E-20 5.1E-25 203.5 13.7 107 440-546 54-167 (455)
39 2z62_A TOLL-like receptor 4, v 99.8 1.9E-20 6.4E-25 188.2 13.0 202 440-673 28-239 (276)
40 4ecn_A Leucine-rich repeat pro 99.8 2.6E-20 8.9E-25 213.3 15.5 233 440-677 548-825 (876)
41 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-20 4.3E-25 194.9 11.6 219 441-677 34-260 (332)
42 2z7x_B TOLL-like receptor 1, v 99.8 2.9E-20 1E-24 204.7 15.1 104 440-546 21-128 (520)
43 4fmz_A Internalin; leucine ric 99.8 9.9E-20 3.4E-24 189.5 17.0 213 440-671 132-346 (347)
44 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-20 7.2E-25 207.4 11.7 106 440-545 50-160 (549)
45 3t6q_A CD180 antigen; protein- 99.8 2.2E-20 7.4E-25 209.9 11.1 152 440-599 33-192 (606)
46 1wwl_A Monocyte differentiatio 99.8 2.3E-20 7.9E-25 191.0 10.2 200 440-672 95-310 (312)
47 3rfs_A Internalin B, repeat mo 99.8 3.8E-20 1.3E-24 185.4 11.5 197 440-676 41-241 (272)
48 2z66_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 189.0 11.7 217 443-674 10-239 (306)
49 3t6q_A CD180 antigen; protein- 99.8 7.7E-20 2.6E-24 205.3 14.8 223 440-674 278-516 (606)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.5E-19 5.3E-24 200.7 16.2 103 440-546 52-159 (562)
51 1ziw_A TOLL-like receptor 3; i 99.8 1E-19 3.4E-24 207.3 13.9 223 440-674 25-288 (680)
52 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-19 6E-24 182.0 13.7 196 440-643 32-238 (285)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-19 8.8E-24 198.5 16.1 206 440-672 61-298 (622)
54 1o6v_A Internalin A; bacterial 99.8 4.3E-19 1.5E-23 192.3 16.5 222 440-674 68-325 (466)
55 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-19 3.7E-24 204.1 11.7 218 440-671 307-558 (606)
56 1o6v_A Internalin A; bacterial 99.8 5.1E-19 1.7E-23 191.8 16.4 213 440-674 112-347 (466)
57 3bz5_A Internalin-J, INLJ; leu 99.8 5.5E-19 1.9E-23 190.1 16.4 206 440-674 42-249 (457)
58 3j0a_A TOLL-like receptor 5; m 99.8 3.4E-19 1.2E-23 207.2 15.7 151 440-597 24-185 (844)
59 2z62_A TOLL-like receptor 4, v 99.8 1.5E-18 5.1E-23 174.3 16.2 199 444-677 11-219 (276)
60 3j0a_A TOLL-like receptor 5; m 99.8 6E-19 2E-23 205.2 15.0 83 440-522 73-162 (844)
61 2z63_A TOLL-like receptor 4, v 99.8 4.4E-19 1.5E-23 197.7 13.1 152 440-599 28-190 (570)
62 2z63_A TOLL-like receptor 4, v 99.8 1.4E-18 4.7E-23 193.7 16.5 227 440-673 76-411 (570)
63 3vq2_A TLR4, TOLL-like recepto 99.8 2.8E-19 9.7E-24 200.8 11.0 195 440-643 350-558 (606)
64 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-18 4.2E-23 198.3 16.2 232 440-675 329-601 (680)
65 3rfs_A Internalin B, repeat mo 99.8 5.5E-19 1.9E-23 176.9 11.6 194 447-674 26-221 (272)
66 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 172.0 14.1 171 441-641 15-190 (251)
67 3bz5_A Internalin-J, INLJ; leu 99.8 1.9E-18 6.6E-23 185.9 16.5 180 440-641 64-244 (457)
68 2z81_A CD282 antigen, TOLL-lik 99.8 3.8E-18 1.3E-22 189.2 19.4 188 445-641 10-207 (549)
69 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-18 6.5E-23 191.6 16.8 175 440-641 40-232 (622)
70 4glp_A Monocyte differentiatio 99.8 3E-19 1E-23 182.6 9.4 199 440-672 91-308 (310)
71 1wwl_A Monocyte differentiatio 99.8 3.6E-20 1.2E-24 189.5 2.3 203 441-675 64-291 (312)
72 2xwt_C Thyrotropin receptor; s 99.8 1.4E-18 4.8E-23 170.4 12.4 189 464-669 32-237 (239)
73 1p9a_G Platelet glycoprotein I 99.8 1.4E-18 4.8E-23 175.4 12.5 170 440-617 31-206 (290)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-18 4.2E-23 193.5 13.2 132 530-676 350-491 (562)
75 1jl5_A Outer protein YOPM; leu 99.8 2.9E-18 1E-22 184.3 15.6 178 440-641 131-308 (454)
76 2xwt_C Thyrotropin receptor; s 99.8 6.8E-19 2.3E-23 172.7 9.5 189 440-641 31-237 (239)
77 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-19 1.1E-23 182.9 5.5 214 440-677 10-233 (317)
78 2o6q_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 169.6 13.9 155 440-602 37-197 (270)
79 2z7x_B TOLL-like receptor 1, v 99.8 1.8E-18 6.3E-23 190.3 11.4 221 440-672 247-482 (520)
80 1jl5_A Outer protein YOPM; leu 99.7 7.2E-18 2.4E-22 181.3 15.5 153 440-614 153-305 (454)
81 3cvr_A Invasion plasmid antige 99.7 7.4E-18 2.5E-22 184.5 15.1 186 440-672 59-244 (571)
82 1h6t_A Internalin B; cell adhe 99.7 4.6E-18 1.6E-22 171.8 12.0 146 440-599 46-191 (291)
83 3oja_A Leucine-rich immune mol 99.7 2.3E-18 7.9E-23 186.9 9.0 200 454-677 21-233 (487)
84 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.8E-22 170.5 13.3 167 440-642 63-229 (308)
85 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.8E-22 158.0 12.2 149 440-599 44-194 (197)
86 2ca6_A RAN GTPase-activating p 99.7 2.2E-18 7.6E-23 182.0 5.1 228 440-674 32-319 (386)
87 3m19_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 161.3 13.3 153 440-600 35-193 (251)
88 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.6E-22 183.9 11.4 166 440-641 43-208 (605)
89 1h6t_A Internalin B; cell adhe 99.7 3.7E-17 1.3E-21 165.1 12.8 148 440-601 68-215 (291)
90 4ay9_X Follicle-stimulating ho 99.7 5.2E-17 1.8E-21 168.9 12.9 216 443-675 12-241 (350)
91 2v9t_B SLIT homolog 2 protein 99.7 5.4E-17 1.8E-21 156.7 11.6 147 443-599 14-165 (220)
92 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4.2E-21 180.2 15.4 136 440-582 52-191 (635)
93 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.6E-22 163.3 7.7 142 442-598 21-162 (263)
94 2o6s_A Variable lymphocyte rec 99.7 1.6E-16 5.5E-21 152.1 12.2 145 443-597 10-159 (208)
95 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.5E-21 176.6 13.2 146 440-599 65-210 (605)
96 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-16 5E-21 153.6 11.6 147 443-599 14-166 (220)
97 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.7E-22 172.4 4.1 218 440-673 70-308 (336)
98 2ca6_A RAN GTPase-activating p 99.7 7.9E-18 2.7E-22 177.7 2.2 229 440-672 9-288 (386)
99 4ay9_X Follicle-stimulating ho 99.7 1.6E-16 5.6E-21 165.1 11.9 213 440-668 30-256 (350)
100 3e6j_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 152.6 12.2 147 442-599 21-172 (229)
101 3goz_A Leucine-rich repeat-con 99.7 4.6E-17 1.6E-21 170.1 5.6 228 440-673 22-299 (362)
102 4ezg_A Putative uncharacterize 99.6 1.5E-16 5.2E-21 150.8 8.3 152 459-641 40-192 (197)
103 2ast_B S-phase kinase-associat 99.6 1.5E-17 5E-22 172.2 1.4 145 442-596 49-205 (336)
104 4glp_A Monocyte differentiatio 99.6 1.1E-16 3.7E-21 163.5 7.8 171 440-641 117-305 (310)
105 2ell_A Acidic leucine-rich nuc 99.6 3E-16 1E-20 144.6 9.3 135 440-582 24-165 (168)
106 2xot_A Amphoterin-induced prot 99.6 7.7E-16 2.6E-20 160.6 13.2 149 443-601 21-178 (361)
107 4g8a_A TOLL-like receptor 4; l 99.6 1.7E-15 5.9E-20 170.8 16.1 148 444-601 35-188 (635)
108 1xeu_A Internalin C; cellular 99.6 1.5E-15 5E-20 150.8 13.6 148 440-602 41-188 (263)
109 3goz_A Leucine-rich repeat-con 99.6 9.3E-17 3.2E-21 167.8 5.0 221 444-673 2-268 (362)
110 2v9t_B SLIT homolog 2 protein 99.6 1E-15 3.5E-20 147.6 10.8 131 440-578 32-166 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-15 7.7E-20 145.2 10.6 131 440-578 32-167 (220)
112 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-16 4.1E-21 173.0 1.2 228 440-672 142-412 (461)
113 1z7x_W Ribonuclease inhibitor; 99.6 1.5E-16 5.3E-21 172.1 1.7 227 441-671 86-383 (461)
114 3e6j_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 144.4 11.6 131 440-579 40-174 (229)
115 2xot_A Amphoterin-induced prot 99.6 2.6E-15 8.8E-20 156.7 9.2 151 440-598 39-201 (361)
116 1w8a_A SLIT protein; signaling 99.6 4.8E-15 1.6E-19 139.7 10.1 125 443-577 11-139 (192)
117 1dce_A Protein (RAB geranylger 99.6 1.4E-17 4.7E-22 183.4 -8.6 194 440-665 349-567 (567)
118 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.7E-20 135.4 7.4 125 440-572 17-148 (149)
119 2o6s_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 138.6 13.0 147 440-599 28-178 (208)
120 3cvr_A Invasion plasmid antige 99.6 6.9E-15 2.4E-19 161.0 12.1 155 440-641 80-241 (571)
121 2qen_A Walker-type ATPase; unk 99.5 1.5E-13 5E-18 142.8 19.3 199 125-334 7-250 (350)
122 2wfh_A SLIT homolog 2 protein 99.5 2.2E-14 7.6E-19 135.1 11.2 125 443-577 13-139 (193)
123 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.1E-19 135.0 8.9 128 440-577 19-153 (176)
124 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4E-19 135.0 7.8 134 458-599 14-153 (176)
125 4b8c_D Glucose-repressible alc 99.5 7.7E-15 2.6E-19 166.6 7.1 112 456-577 217-329 (727)
126 2ell_A Acidic leucine-rich nuc 99.5 2.7E-14 9.3E-19 131.4 8.7 134 461-602 22-163 (168)
127 2fna_A Conserved hypothetical 99.5 4E-13 1.4E-17 139.9 18.2 204 126-342 9-262 (357)
128 4b8c_D Glucose-repressible alc 99.5 6.8E-15 2.3E-19 167.1 2.8 143 440-596 224-369 (727)
129 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 127.4 11.7 128 442-579 9-139 (177)
130 1dce_A Protein (RAB geranylger 99.5 1.1E-14 3.8E-19 160.2 4.1 133 445-592 428-566 (567)
131 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.4E-18 129.8 10.8 125 465-599 12-139 (193)
132 1w5s_A Origin recognition comp 99.5 2E-12 6.9E-17 137.5 19.5 248 129-390 21-320 (412)
133 3ogk_B Coronatine-insensitive 99.5 4.3E-14 1.5E-18 158.0 6.8 223 440-673 270-528 (592)
134 2je0_A Acidic leucine-rich nuc 99.5 3.4E-14 1.2E-18 127.9 4.8 125 461-593 15-147 (149)
135 1w8a_A SLIT protein; signaling 99.4 3.4E-13 1.2E-17 126.9 9.2 125 465-599 10-139 (192)
136 1ds9_A Outer arm dynein; leuci 99.4 4.6E-15 1.6E-19 140.7 -4.7 143 441-592 24-180 (198)
137 2o6r_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 119.5 11.1 127 464-599 8-137 (177)
138 3ogk_B Coronatine-insensitive 99.4 6.4E-13 2.2E-17 148.5 8.2 222 440-671 220-501 (592)
139 2r9u_A Variable lymphocyte rec 99.3 2.8E-12 9.7E-17 118.3 10.4 100 443-545 15-117 (174)
140 3g39_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 117.3 10.0 100 443-545 12-114 (170)
141 1ds9_A Outer arm dynein; leuci 99.3 7.5E-14 2.6E-18 132.2 -2.1 127 440-578 48-186 (198)
142 2qby_B CDC6 homolog 3, cell di 99.3 6.2E-11 2.1E-15 124.6 19.8 239 130-388 20-294 (384)
143 1njg_A DNA polymerase III subu 99.3 4.4E-11 1.5E-15 117.0 16.6 185 127-333 20-231 (250)
144 2chg_A Replication factor C sm 99.3 4.9E-11 1.7E-15 114.9 16.3 190 127-332 14-206 (226)
145 2qby_A CDC6 homolog 1, cell di 99.3 6.7E-11 2.3E-15 124.4 18.2 200 129-328 19-243 (386)
146 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.2E-16 113.4 10.1 108 465-582 14-123 (174)
147 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 112.9 10.1 108 464-581 10-119 (170)
148 2v1u_A Cell division control p 99.2 1.8E-10 6E-15 121.2 17.4 241 129-387 18-299 (387)
149 2p1m_B Transport inhibitor res 99.2 5.9E-12 2E-16 140.6 5.7 220 440-671 265-519 (594)
150 3sb4_A Hypothetical leucine ri 99.2 2.3E-11 7.9E-16 124.9 7.8 207 440-675 49-314 (329)
151 2p1m_B Transport inhibitor res 99.2 5.3E-12 1.8E-16 141.1 2.6 229 440-674 130-419 (594)
152 1fnn_A CDC6P, cell division co 99.1 2.1E-09 7.1E-14 113.1 18.6 198 130-329 17-246 (389)
153 4fdw_A Leucine rich hypothetic 99.1 8.7E-10 3E-14 115.8 15.5 215 440-676 135-363 (401)
154 1sxj_B Activator 1 37 kDa subu 99.1 6.8E-10 2.3E-14 113.6 13.1 191 127-332 18-212 (323)
155 3sb4_A Hypothetical leucine ri 99.1 7E-11 2.4E-15 121.3 5.2 218 440-676 25-291 (329)
156 2ifg_A High affinity nerve gro 99.0 4E-10 1.4E-14 116.6 10.2 100 444-546 12-116 (347)
157 3qfl_A MLA10; coiled-coil, (CC 99.0 6.3E-10 2.2E-14 93.6 6.9 65 7-71 5-81 (115)
158 2ifg_A High affinity nerve gro 99.0 8E-10 2.7E-14 114.3 8.0 106 466-580 11-119 (347)
159 1iqp_A RFCS; clamp loader, ext 98.9 2.8E-09 9.6E-14 109.2 11.4 192 127-334 22-216 (327)
160 3un9_A NLR family member X1; l 98.9 9.7E-11 3.3E-15 121.8 -1.1 156 440-599 72-252 (372)
161 3un9_A NLR family member X1; l 98.9 2.7E-10 9.4E-15 118.4 1.2 135 440-578 101-253 (372)
162 3te6_A Regulatory protein SIR3 98.8 7.4E-08 2.5E-12 96.4 17.2 170 131-300 21-212 (318)
163 4fdw_A Leucine rich hypothetic 98.8 1.9E-08 6.6E-13 105.5 12.5 210 441-671 158-383 (401)
164 2chq_A Replication factor C sm 98.8 3.7E-08 1.3E-12 100.3 14.3 187 127-332 14-206 (319)
165 1jr3_A DNA polymerase III subu 98.8 9.6E-08 3.3E-12 99.6 15.5 181 129-331 15-222 (373)
166 1hqc_A RUVB; extended AAA-ATPa 98.7 9.4E-08 3.2E-12 97.6 14.3 178 128-333 10-214 (324)
167 1jbk_A CLPB protein; beta barr 98.6 9.1E-08 3.1E-12 89.3 9.6 152 129-295 21-194 (195)
168 3h4m_A Proteasome-activating n 98.6 6.5E-07 2.2E-11 89.5 14.6 181 126-328 13-229 (285)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.6 2.9E-06 9.9E-11 83.5 18.6 182 128-329 4-221 (262)
170 2ra8_A Uncharacterized protein 98.5 3.2E-08 1.1E-12 101.9 3.7 149 440-597 139-318 (362)
171 2ra8_A Uncharacterized protein 98.5 1.2E-07 4E-12 97.7 6.7 133 440-577 172-320 (362)
172 1d2n_A N-ethylmaleimide-sensit 98.5 4.1E-06 1.4E-10 83.0 17.5 195 131-351 34-263 (272)
173 3bos_A Putative DNA replicatio 98.5 2E-07 6.8E-12 90.6 7.8 175 128-330 26-217 (242)
174 1sxj_D Activator 1 41 kDa subu 98.5 3.7E-07 1.2E-11 94.4 10.2 197 127-330 34-235 (353)
175 3d8b_A Fidgetin-like protein 1 98.4 8.6E-06 2.9E-10 83.9 19.2 183 127-330 81-295 (357)
176 1sxj_A Activator 1 95 kDa subu 98.4 6.8E-07 2.3E-11 97.1 11.2 193 126-332 35-255 (516)
177 1xwi_A SKD1 protein; VPS4B, AA 98.4 2E-05 6.7E-10 79.9 20.5 184 127-330 9-223 (322)
178 1io0_A Tropomodulin; LRR prote 98.4 1.6E-07 5.3E-12 87.2 4.2 113 460-576 33-163 (185)
179 3pvs_A Replication-associated 98.4 4.1E-06 1.4E-10 88.7 15.5 180 127-331 23-216 (447)
180 3eie_A Vacuolar protein sortin 98.4 7.8E-06 2.7E-10 83.0 16.8 184 125-329 13-227 (322)
181 3pfi_A Holliday junction ATP-d 98.4 7.8E-06 2.7E-10 83.8 16.9 175 127-330 26-227 (338)
182 1sxj_E Activator 1 40 kDa subu 98.4 1.5E-06 5.3E-11 89.7 11.3 199 127-331 11-238 (354)
183 3vfd_A Spastin; ATPase, microt 98.3 1.9E-05 6.7E-10 82.4 19.6 183 126-329 111-325 (389)
184 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.3E-12 86.3 3.9 106 440-546 36-164 (185)
185 3u61_B DNA polymerase accessor 98.3 2.3E-06 7.8E-11 87.2 11.8 179 127-327 23-213 (324)
186 1sxj_C Activator 1 40 kDa subu 98.3 5.3E-06 1.8E-10 85.1 14.4 184 127-326 22-208 (340)
187 3b9p_A CG5977-PA, isoform A; A 98.3 4.9E-05 1.7E-09 76.2 20.5 182 127-329 18-232 (297)
188 3syl_A Protein CBBX; photosynt 98.3 1.5E-06 5.1E-11 87.9 9.3 152 131-300 32-218 (309)
189 3uk6_A RUVB-like 2; hexameric 98.3 7.8E-06 2.7E-10 84.9 14.4 195 129-328 43-301 (368)
190 1a5t_A Delta prime, HOLB; zinc 98.3 1.6E-05 5.4E-10 81.2 16.0 170 135-328 7-203 (334)
191 2zan_A Vacuolar protein sortin 98.2 4.9E-05 1.7E-09 80.6 19.9 184 126-329 130-344 (444)
192 2qp9_X Vacuolar protein sortin 98.2 2.3E-05 8E-10 80.5 15.8 182 127-329 48-260 (355)
193 4b4t_J 26S protease regulatory 98.2 5.9E-05 2E-09 77.3 17.9 175 127-323 145-354 (405)
194 3rw6_A Nuclear RNA export fact 98.2 2.5E-06 8.6E-11 83.1 7.0 33 152-186 25-57 (267)
195 2z4s_A Chromosomal replication 98.2 6.3E-06 2.2E-10 87.3 10.7 182 129-328 104-304 (440)
196 2p65_A Hypothetical protein PF 98.1 6.2E-06 2.1E-10 76.2 9.1 48 129-176 21-68 (187)
197 3cf0_A Transitional endoplasmi 98.1 8.5E-05 2.9E-09 74.5 17.8 175 127-325 12-223 (301)
198 3e4g_A ATP synthase subunit S, 98.1 2.1E-06 7.1E-11 77.6 4.8 82 463-544 61-150 (176)
199 3pxg_A Negative regulator of g 98.1 2.4E-05 8.1E-10 83.7 13.1 150 129-300 179-339 (468)
200 4b4t_I 26S protease regulatory 98.1 0.00017 5.7E-09 74.2 18.4 173 127-323 179-388 (437)
201 4b4t_L 26S protease subunit RP 98.0 0.00017 5.9E-09 75.1 18.2 171 129-323 180-387 (437)
202 4b4t_H 26S protease regulatory 98.0 0.00017 5.8E-09 75.0 17.9 173 129-323 208-415 (467)
203 3rw6_A Nuclear RNA export fact 98.0 4.9E-06 1.7E-10 81.1 6.0 59 440-498 170-233 (267)
204 4b4t_M 26S protease regulatory 98.0 7.7E-05 2.6E-09 77.7 14.8 173 127-323 178-387 (434)
205 2gno_A DNA polymerase III, gam 98.0 3.1E-05 1.1E-09 77.5 11.3 146 134-299 1-152 (305)
206 1lv7_A FTSH; alpha/beta domain 97.9 0.00053 1.8E-08 66.9 19.2 179 127-327 9-222 (257)
207 3e4g_A ATP synthase subunit S, 97.9 1.1E-05 3.6E-10 73.0 5.8 84 440-523 61-154 (176)
208 1l8q_A Chromosomal replication 97.9 5.9E-05 2E-09 76.6 12.3 168 137-325 21-203 (324)
209 3n70_A Transport activator; si 97.9 8.5E-06 2.9E-10 72.0 4.5 46 131-176 2-49 (145)
210 1qvr_A CLPB protein; coiled co 97.8 5.4E-05 1.8E-09 87.4 11.5 156 129-299 169-345 (854)
211 4b4t_K 26S protease regulatory 97.8 0.00041 1.4E-08 72.2 16.9 171 129-323 171-379 (428)
212 3ec2_A DNA replication protein 97.8 1.9E-05 6.4E-10 72.7 5.3 117 134-267 18-142 (180)
213 2ce7_A Cell division protein F 97.8 0.0004 1.4E-08 73.5 15.5 174 128-323 14-221 (476)
214 2r62_A Cell division protease 97.8 2.6E-05 8.9E-10 76.9 6.1 152 129-300 10-197 (268)
215 3hu3_A Transitional endoplasmi 97.7 0.00023 8E-09 75.9 13.8 177 129-327 203-412 (489)
216 3pxi_A Negative regulator of g 97.7 0.00015 5E-09 82.8 12.0 150 129-300 179-339 (758)
217 1r6b_X CLPA protein; AAA+, N-t 97.7 0.0004 1.4E-08 79.3 15.6 156 129-299 185-362 (758)
218 1in4_A RUVB, holliday junction 97.6 0.0046 1.6E-07 62.8 20.7 194 128-350 23-251 (334)
219 4fcw_A Chaperone protein CLPB; 97.6 0.00016 5.4E-09 72.9 8.9 105 131-242 18-131 (311)
220 2w58_A DNAI, primosome compone 97.5 0.00024 8.3E-09 66.5 9.2 115 135-267 34-158 (202)
221 1ofh_A ATP-dependent HSL prote 97.5 0.00058 2E-08 68.6 12.4 46 131-176 16-75 (310)
222 3co5_A Putative two-component 97.4 3.5E-05 1.2E-09 67.8 1.4 46 131-176 5-52 (143)
223 2c9o_A RUVB-like 1; hexameric 97.4 0.0013 4.6E-08 69.9 13.2 48 129-176 36-88 (456)
224 3cf2_A TER ATPase, transitiona 97.3 0.0021 7.1E-08 72.2 14.9 171 129-323 203-407 (806)
225 1ixz_A ATP-dependent metallopr 97.3 0.0023 7.8E-08 62.2 13.5 175 127-323 13-221 (254)
226 4fs7_A Uncharacterized protein 97.3 0.00043 1.5E-08 72.3 8.6 185 480-675 157-359 (394)
227 2x8a_A Nuclear valosin-contain 97.3 0.004 1.4E-07 61.1 14.7 153 128-300 8-192 (274)
228 4fs7_A Uncharacterized protein 97.2 0.0012 4.2E-08 68.8 10.7 206 440-668 162-376 (394)
229 1iy2_A ATP-dependent metallopr 97.1 0.004 1.4E-07 61.3 13.1 176 126-323 36-245 (278)
230 3m6a_A ATP-dependent protease 97.1 0.0017 5.9E-08 70.5 10.7 46 131-176 82-133 (543)
231 3pxi_A Negative regulator of g 97.1 0.00068 2.3E-08 77.2 7.6 148 130-298 491-674 (758)
232 3t15_A Ribulose bisphosphate c 97.1 0.0027 9.1E-08 63.1 10.9 27 151-177 36-62 (293)
233 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00054 1.8E-08 63.0 5.0 78 440-517 41-135 (197)
234 2dhr_A FTSH; AAA+ protein, hex 97.0 0.005 1.7E-07 65.5 12.8 175 127-323 28-236 (499)
235 1n0w_A DNA repair protein RAD5 96.9 0.0046 1.6E-07 59.4 10.9 90 151-241 24-130 (243)
236 1ojl_A Transcriptional regulat 96.9 0.001 3.5E-08 66.5 6.3 46 131-176 3-50 (304)
237 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0021 7.3E-08 73.2 9.0 102 131-242 459-569 (758)
238 4gt6_A Cell surface protein; l 96.8 0.0075 2.6E-07 62.8 12.6 126 526-669 258-389 (394)
239 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00073 2.5E-08 62.1 4.0 118 459-577 37-170 (197)
240 3io5_A Recombination and repai 96.8 0.0057 2E-07 60.2 10.3 85 153-242 30-123 (333)
241 4gt6_A Cell surface protein; l 96.8 0.0023 8E-08 66.7 8.1 107 458-575 260-368 (394)
242 1ypw_A Transitional endoplasmi 96.7 0.0082 2.8E-07 68.4 12.5 152 129-301 203-387 (806)
243 2kjq_A DNAA-related protein; s 96.7 0.0026 8.9E-08 56.0 6.4 40 150-191 35-74 (149)
244 3hr8_A Protein RECA; alpha and 96.7 0.0077 2.6E-07 61.0 10.6 85 151-242 61-151 (356)
245 1v5w_A DMC1, meiotic recombina 96.7 0.0088 3E-07 60.8 11.1 58 151-209 122-183 (343)
246 2cvh_A DNA repair and recombin 96.6 0.0086 2.9E-07 56.5 10.2 50 151-206 20-69 (220)
247 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0025 8.5E-08 63.1 6.3 68 152-241 124-193 (331)
248 4h09_A Hypothetical leucine ri 96.6 0.0052 1.8E-07 63.6 9.2 124 458-593 212-340 (379)
249 3rfe_A Platelet glycoprotein I 96.6 0.0024 8.1E-08 54.7 5.3 54 489-545 12-67 (130)
250 2z43_A DNA repair and recombin 96.6 0.0073 2.5E-07 60.9 9.6 89 151-240 107-213 (324)
251 1jr3_D DNA polymerase III, del 96.5 0.017 6E-07 58.7 12.5 164 144-329 11-184 (343)
252 3lda_A DNA repair protein RAD5 96.5 0.0091 3.1E-07 61.7 10.2 89 151-240 178-283 (400)
253 4h09_A Hypothetical leucine ri 96.5 0.0097 3.3E-07 61.5 10.4 124 459-593 190-317 (379)
254 2qgz_A Helicase loader, putati 96.5 0.0042 1.4E-07 62.1 7.2 55 134-190 132-190 (308)
255 2i1q_A DNA repair and recombin 96.5 0.0095 3.3E-07 60.0 9.9 89 151-240 98-214 (322)
256 2zr9_A Protein RECA, recombina 96.4 0.013 4.3E-07 59.6 10.2 84 151-241 61-150 (349)
257 1qvr_A CLPB protein; coiled co 96.4 0.0042 1.4E-07 71.6 7.2 59 131-191 559-626 (854)
258 3rfe_A Platelet glycoprotein I 96.3 0.0056 1.9E-07 52.4 5.9 53 444-498 12-68 (130)
259 1u94_A RECA protein, recombina 96.3 0.017 5.8E-07 58.7 10.4 83 151-240 63-151 (356)
260 3cf2_A TER ATPase, transitiona 96.2 0.0061 2.1E-07 68.4 7.4 173 128-322 475-682 (806)
261 1xp8_A RECA protein, recombina 96.2 0.019 6.3E-07 58.7 10.4 84 151-241 74-163 (366)
262 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.019 6.4E-07 54.6 10.0 51 152-207 24-74 (235)
263 4a74_A DNA repair and recombin 96.0 0.032 1.1E-06 52.9 10.5 90 151-241 25-136 (231)
264 2px0_A Flagellar biosynthesis 95.9 0.027 9.4E-07 55.7 9.7 86 150-238 104-190 (296)
265 1rz3_A Hypothetical protein rb 95.9 0.0083 2.8E-07 55.8 5.5 43 134-176 2-47 (201)
266 2bjv_A PSP operon transcriptio 95.9 0.0087 3E-07 58.4 5.8 61 130-192 6-68 (265)
267 1pzn_A RAD51, DNA repair and r 95.7 0.032 1.1E-06 56.7 9.4 57 151-208 131-191 (349)
268 1sky_E F1-ATPase, F1-ATP synth 95.7 0.021 7.3E-07 59.6 8.1 88 152-240 152-255 (473)
269 3c8u_A Fructokinase; YP_612366 95.7 0.01 3.5E-07 55.5 5.3 40 137-176 6-47 (208)
270 3ice_A Transcription terminati 95.5 0.01 3.5E-07 59.9 4.7 97 141-242 163-273 (422)
271 3fwy_A Light-independent proto 95.5 0.011 3.8E-07 59.1 4.8 42 149-192 46-87 (314)
272 2r44_A Uncharacterized protein 95.4 0.023 7.7E-07 57.5 7.0 44 131-176 28-71 (331)
273 2ehv_A Hypothetical protein PH 95.4 0.038 1.3E-06 53.1 8.4 23 151-173 30-52 (251)
274 1g8p_A Magnesium-chelatase 38 95.3 0.0094 3.2E-07 60.8 3.9 50 127-176 21-70 (350)
275 1qhx_A CPT, protein (chloramph 95.3 0.0099 3.4E-07 53.9 3.6 25 152-176 4-28 (178)
276 3dm5_A SRP54, signal recogniti 95.3 0.12 4.1E-06 53.7 12.0 29 150-178 99-127 (443)
277 2dr3_A UPF0273 protein PH0284; 95.2 0.063 2.1E-06 51.4 9.4 47 151-201 23-69 (247)
278 3bh0_A DNAB-like replicative h 95.2 0.13 4.6E-06 51.2 12.0 51 151-205 68-118 (315)
279 3tqc_A Pantothenate kinase; bi 95.2 0.087 3E-06 52.5 10.2 43 150-192 91-133 (321)
280 3kb2_A SPBC2 prophage-derived 95.2 0.012 4.2E-07 52.9 3.7 25 152-176 2-26 (173)
281 2hf9_A Probable hydrogenase ni 95.1 0.019 6.6E-07 54.3 5.3 41 136-176 23-63 (226)
282 1kgd_A CASK, peripheral plasma 95.1 0.013 4.3E-07 53.5 3.5 26 151-176 5-30 (180)
283 3kl4_A SRP54, signal recogniti 95.0 0.13 4.3E-06 53.5 11.3 39 150-190 96-134 (433)
284 3vaa_A Shikimate kinase, SK; s 95.0 0.014 4.9E-07 54.0 3.9 26 151-176 25-50 (199)
285 2xxa_A Signal recognition part 95.0 0.21 7.1E-06 52.1 13.0 41 150-191 99-139 (433)
286 3lw7_A Adenylate kinase relate 95.0 0.014 4.8E-07 52.6 3.6 20 152-171 2-21 (179)
287 3cmu_A Protein RECA, recombina 94.9 0.058 2E-06 66.2 9.4 84 150-240 1426-1515(2050)
288 2wsm_A Hydrogenase expression/ 94.9 0.02 6.8E-07 54.0 4.4 43 134-176 13-55 (221)
289 3uie_A Adenylyl-sulfate kinase 94.9 0.018 6.3E-07 53.4 4.1 29 148-176 22-50 (200)
290 1j8m_F SRP54, signal recogniti 94.8 0.23 7.9E-06 49.0 12.2 87 151-239 98-189 (297)
291 4eun_A Thermoresistant glucoki 94.8 0.017 6E-07 53.5 3.9 27 149-175 27-53 (200)
292 1vma_A Cell division protein F 94.8 0.13 4.3E-06 51.0 10.3 87 150-240 103-196 (306)
293 1fx0_B ATP synthase beta chain 94.8 0.075 2.6E-06 55.6 8.9 90 151-241 165-277 (498)
294 3trf_A Shikimate kinase, SK; a 94.8 0.017 5.8E-07 52.8 3.7 26 151-176 5-30 (185)
295 1zp6_A Hypothetical protein AT 94.8 0.016 5.5E-07 53.2 3.6 24 151-174 9-32 (191)
296 1kag_A SKI, shikimate kinase I 94.8 0.015 5.1E-07 52.4 3.2 25 152-176 5-29 (173)
297 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.018 6E-07 61.4 4.2 45 131-177 23-67 (500)
298 2ck3_D ATP synthase subunit be 94.7 0.17 5.9E-06 52.7 11.2 99 142-241 143-264 (482)
299 1ly1_A Polynucleotide kinase; 94.7 0.018 6.1E-07 52.2 3.5 22 152-173 3-24 (181)
300 2ga8_A Hypothetical 39.9 kDa p 94.7 0.035 1.2E-06 55.7 5.9 42 135-176 4-49 (359)
301 3hws_A ATP-dependent CLP prote 94.7 0.028 9.7E-07 57.6 5.4 46 131-176 16-76 (363)
302 2j37_W Signal recognition part 94.7 0.33 1.1E-05 51.5 13.6 38 150-189 100-137 (504)
303 1g5t_A COB(I)alamin adenosyltr 94.6 0.036 1.2E-06 50.6 5.2 112 151-268 28-163 (196)
304 1odf_A YGR205W, hypothetical 3 94.6 0.037 1.3E-06 54.5 5.8 55 149-203 29-84 (290)
305 3tau_A Guanylate kinase, GMP k 94.6 0.022 7.5E-07 53.2 3.9 27 150-176 7-33 (208)
306 1ex7_A Guanylate kinase; subst 94.6 0.018 6E-07 52.6 3.1 25 152-176 2-26 (186)
307 3t61_A Gluconokinase; PSI-biol 94.5 0.018 6.1E-07 53.5 3.1 26 151-176 18-43 (202)
308 3a00_A Guanylate kinase, GMP k 94.5 0.017 6E-07 52.8 2.9 25 152-176 2-26 (186)
309 3iij_A Coilin-interacting nucl 94.4 0.021 7.1E-07 51.9 3.3 26 151-176 11-36 (180)
310 3e70_C DPA, signal recognition 94.4 0.41 1.4E-05 47.9 13.0 59 149-209 127-186 (328)
311 3tr0_A Guanylate kinase, GMP k 94.4 0.022 7.6E-07 52.9 3.5 25 151-175 7-31 (205)
312 2rhm_A Putative kinase; P-loop 94.4 0.026 8.8E-07 51.8 3.9 26 151-176 5-30 (193)
313 2qor_A Guanylate kinase; phosp 94.4 0.021 7.1E-07 53.2 3.3 26 151-176 12-37 (204)
314 1nks_A Adenylate kinase; therm 94.4 0.023 8E-07 52.1 3.6 26 152-177 2-27 (194)
315 1kht_A Adenylate kinase; phosp 94.4 0.025 8.4E-07 51.9 3.7 25 152-176 4-28 (192)
316 1knq_A Gluconate kinase; ALFA/ 94.4 0.029 9.8E-07 50.7 4.0 25 151-175 8-32 (175)
317 1ypw_A Transitional endoplasmi 94.4 0.01 3.5E-07 67.6 1.2 152 129-300 476-662 (806)
318 2ze6_A Isopentenyl transferase 94.3 0.025 8.5E-07 54.7 3.7 25 152-176 2-26 (253)
319 3ney_A 55 kDa erythrocyte memb 94.3 0.027 9.3E-07 51.7 3.8 27 150-176 18-44 (197)
320 1ls1_A Signal recognition part 94.3 0.16 5.6E-06 50.0 9.8 87 151-239 98-189 (295)
321 1xjc_A MOBB protein homolog; s 94.3 0.027 9.3E-07 50.3 3.7 28 150-177 3-30 (169)
322 1um8_A ATP-dependent CLP prote 94.3 0.038 1.3E-06 56.9 5.4 26 151-176 72-97 (376)
323 1lvg_A Guanylate kinase, GMP k 94.3 0.021 7.1E-07 52.9 2.9 24 152-175 5-28 (198)
324 2bdt_A BH3686; alpha-beta prot 94.3 0.026 8.8E-07 51.7 3.5 22 152-173 3-24 (189)
325 1via_A Shikimate kinase; struc 94.2 0.023 8E-07 51.3 3.2 25 152-176 5-29 (175)
326 1zuh_A Shikimate kinase; alpha 94.2 0.029 9.9E-07 50.3 3.7 27 150-176 6-32 (168)
327 1gvn_B Zeta; postsegregational 94.2 0.045 1.5E-06 54.0 5.4 26 150-175 32-57 (287)
328 1ye8_A Protein THEP1, hypothet 94.2 0.027 9.3E-07 51.1 3.5 24 153-176 2-25 (178)
329 3aez_A Pantothenate kinase; tr 94.2 0.094 3.2E-06 52.2 7.7 43 149-191 88-130 (312)
330 3asz_A Uridine kinase; cytidin 94.2 0.028 9.6E-07 52.5 3.6 27 150-176 5-31 (211)
331 1y63_A LMAJ004144AAA protein; 94.1 0.035 1.2E-06 50.7 4.1 24 151-174 10-33 (184)
332 2jaq_A Deoxyguanosine kinase; 94.1 0.03 1E-06 51.9 3.8 24 153-176 2-25 (205)
333 2j41_A Guanylate kinase; GMP, 94.1 0.031 1.1E-06 51.9 3.9 25 151-175 6-30 (207)
334 4gp7_A Metallophosphoesterase; 94.1 0.022 7.5E-07 51.3 2.6 22 151-172 9-30 (171)
335 2yvu_A Probable adenylyl-sulfa 94.1 0.034 1.2E-06 50.8 3.9 28 150-177 12-39 (186)
336 2b8t_A Thymidine kinase; deoxy 94.1 0.024 8.2E-07 53.3 2.9 110 150-268 11-126 (223)
337 2ffh_A Protein (FFH); SRP54, s 94.0 0.26 9E-06 51.0 10.9 56 151-209 98-155 (425)
338 1ukz_A Uridylate kinase; trans 94.0 0.035 1.2E-06 51.5 4.0 26 150-175 14-39 (203)
339 2c95_A Adenylate kinase 1; tra 94.0 0.035 1.2E-06 51.1 3.9 26 151-176 9-34 (196)
340 1uf9_A TT1252 protein; P-loop, 94.0 0.033 1.1E-06 51.6 3.7 26 149-174 6-31 (203)
341 1uj2_A Uridine-cytidine kinase 94.0 0.034 1.2E-06 53.7 4.0 28 149-176 20-47 (252)
342 1cke_A CK, MSSA, protein (cyti 93.9 0.033 1.1E-06 52.7 3.7 25 152-176 6-30 (227)
343 2if2_A Dephospho-COA kinase; a 93.9 0.032 1.1E-06 51.8 3.4 22 152-173 2-23 (204)
344 2iyv_A Shikimate kinase, SK; t 93.9 0.028 9.6E-07 51.2 2.9 25 152-176 3-27 (184)
345 1tev_A UMP-CMP kinase; ploop, 93.9 0.037 1.3E-06 50.8 3.8 26 151-176 3-28 (196)
346 1znw_A Guanylate kinase, GMP k 93.9 0.032 1.1E-06 52.0 3.4 26 151-176 20-45 (207)
347 2bbw_A Adenylate kinase 4, AK4 93.8 0.039 1.3E-06 53.0 3.9 26 151-176 27-52 (246)
348 2bwj_A Adenylate kinase 5; pho 93.8 0.037 1.3E-06 51.0 3.6 25 152-176 13-37 (199)
349 1e6c_A Shikimate kinase; phosp 93.8 0.033 1.1E-06 50.1 3.2 25 152-176 3-27 (173)
350 2qt1_A Nicotinamide riboside k 93.8 0.035 1.2E-06 51.7 3.4 25 151-175 21-45 (207)
351 1htw_A HI0065; nucleotide-bind 93.7 0.038 1.3E-06 48.9 3.4 27 149-175 31-57 (158)
352 3cm0_A Adenylate kinase; ATP-b 93.7 0.041 1.4E-06 50.1 3.7 25 152-176 5-29 (186)
353 3a4m_A L-seryl-tRNA(SEC) kinas 93.7 0.041 1.4E-06 53.4 3.8 26 151-176 4-29 (260)
354 1z6g_A Guanylate kinase; struc 93.7 0.032 1.1E-06 52.5 2.9 25 151-175 23-47 (218)
355 2plr_A DTMP kinase, probable t 93.6 0.044 1.5E-06 51.1 3.9 26 152-177 5-30 (213)
356 2vli_A Antibiotic resistance p 93.6 0.031 1E-06 50.8 2.7 26 151-176 5-30 (183)
357 2cdn_A Adenylate kinase; phosp 93.6 0.049 1.7E-06 50.4 4.1 26 151-176 20-45 (201)
358 3vr4_D V-type sodium ATPase su 93.6 0.095 3.3E-06 54.2 6.5 90 152-241 152-259 (465)
359 1rj9_A FTSY, signal recognitio 93.6 0.042 1.4E-06 54.5 3.8 28 150-177 101-128 (304)
360 1s96_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 51.8 3.4 26 151-176 16-41 (219)
361 4e22_A Cytidylate kinase; P-lo 93.5 0.044 1.5E-06 52.9 3.7 27 150-176 26-52 (252)
362 1jjv_A Dephospho-COA kinase; P 93.5 0.038 1.3E-06 51.4 3.2 22 152-173 3-24 (206)
363 3end_A Light-independent proto 93.5 0.077 2.6E-06 52.9 5.6 43 148-192 38-80 (307)
364 3umf_A Adenylate kinase; rossm 93.5 0.051 1.7E-06 50.8 4.0 27 150-176 28-54 (217)
365 1qf9_A UMP/CMP kinase, protein 93.5 0.046 1.6E-06 50.0 3.7 26 151-176 6-31 (194)
366 2pt5_A Shikimate kinase, SK; a 93.4 0.049 1.7E-06 48.6 3.7 24 153-176 2-25 (168)
367 3l0o_A Transcription terminati 93.4 0.036 1.2E-06 55.9 3.0 51 141-192 164-216 (427)
368 3tlx_A Adenylate kinase 2; str 93.4 0.093 3.2E-06 50.2 5.9 28 149-176 27-54 (243)
369 1g41_A Heat shock protein HSLU 93.4 0.052 1.8E-06 56.5 4.2 47 131-177 16-76 (444)
370 3k1j_A LON protease, ATP-depen 93.4 0.048 1.6E-06 60.0 4.2 50 126-177 37-86 (604)
371 2jeo_A Uridine-cytidine kinase 93.4 0.05 1.7E-06 52.2 3.8 26 150-175 24-49 (245)
372 2f1r_A Molybdopterin-guanine d 93.3 0.035 1.2E-06 49.9 2.5 27 152-178 3-29 (171)
373 2yhs_A FTSY, cell division pro 93.3 0.61 2.1E-05 49.0 12.2 41 151-194 293-333 (503)
374 1tue_A Replication protein E1; 93.3 0.069 2.4E-06 49.0 4.4 38 139-176 45-83 (212)
375 2c61_A A-type ATP synthase non 93.3 0.072 2.5E-06 55.5 5.1 89 152-240 153-259 (469)
376 1aky_A Adenylate kinase; ATP:A 93.3 0.054 1.8E-06 51.0 3.9 26 151-176 4-29 (220)
377 2p5t_B PEZT; postsegregational 93.3 0.065 2.2E-06 51.7 4.6 27 150-176 31-57 (253)
378 2pbr_A DTMP kinase, thymidylat 93.3 0.052 1.8E-06 49.7 3.7 24 153-176 2-25 (195)
379 2grj_A Dephospho-COA kinase; T 93.2 0.054 1.9E-06 49.7 3.6 26 150-175 11-36 (192)
380 3cmw_A Protein RECA, recombina 93.2 0.24 8.3E-06 60.0 10.0 85 151-242 732-822 (1706)
381 2wwf_A Thymidilate kinase, put 93.2 0.055 1.9E-06 50.5 3.8 27 151-177 10-36 (212)
382 1zd8_A GTP:AMP phosphotransfer 93.2 0.053 1.8E-06 51.3 3.6 26 151-176 7-32 (227)
383 2z0h_A DTMP kinase, thymidylat 93.2 0.14 4.7E-06 46.9 6.5 25 153-177 2-26 (197)
384 1zak_A Adenylate kinase; ATP:A 93.1 0.05 1.7E-06 51.3 3.4 26 151-176 5-30 (222)
385 1nn5_A Similar to deoxythymidy 93.1 0.06 2.1E-06 50.3 3.9 27 151-177 9-35 (215)
386 1gtv_A TMK, thymidylate kinase 93.0 0.032 1.1E-06 52.2 1.9 25 152-176 1-25 (214)
387 2onk_A Molybdate/tungstate ABC 93.0 0.058 2E-06 51.5 3.6 24 152-175 25-48 (240)
388 1np6_A Molybdopterin-guanine d 93.0 0.064 2.2E-06 48.3 3.7 26 151-176 6-31 (174)
389 3fb4_A Adenylate kinase; psych 92.9 0.063 2.2E-06 50.3 3.7 24 153-176 2-25 (216)
390 4a1f_A DNAB helicase, replicat 92.9 0.34 1.2E-05 48.5 9.2 50 152-205 47-96 (338)
391 2i3b_A HCR-ntpase, human cance 92.9 0.051 1.7E-06 49.7 2.9 25 152-176 2-26 (189)
392 3gqb_B V-type ATP synthase bet 92.9 0.15 5E-06 52.8 6.6 90 152-241 148-262 (464)
393 2q6t_A DNAB replication FORK h 92.8 0.56 1.9E-05 49.2 11.3 52 151-205 200-251 (444)
394 3cmw_A Protein RECA, recombina 92.8 0.29 1E-05 59.3 9.9 83 151-240 1431-1519(1706)
395 3d3q_A TRNA delta(2)-isopenten 92.8 0.066 2.3E-06 53.6 3.8 25 152-176 8-32 (340)
396 3cmu_A Protein RECA, recombina 92.7 0.33 1.1E-05 59.7 10.4 84 151-241 383-472 (2050)
397 1sq5_A Pantothenate kinase; P- 92.7 0.12 4.1E-06 51.4 5.7 28 149-176 78-105 (308)
398 1cr0_A DNA primase/helicase; R 92.7 0.19 6.4E-06 49.7 7.1 52 151-205 35-86 (296)
399 3dl0_A Adenylate kinase; phosp 92.7 0.07 2.4E-06 50.0 3.7 24 153-176 2-25 (216)
400 3nwj_A ATSK2; P loop, shikimat 92.7 0.059 2E-06 51.7 3.2 25 152-176 49-73 (250)
401 1m7g_A Adenylylsulfate kinase; 92.7 0.076 2.6E-06 49.6 3.9 28 149-176 23-50 (211)
402 2v54_A DTMP kinase, thymidylat 92.7 0.069 2.4E-06 49.4 3.6 25 151-175 4-28 (204)
403 3tif_A Uncharacterized ABC tra 92.6 0.054 1.8E-06 51.6 2.8 25 151-175 31-55 (235)
404 3lnc_A Guanylate kinase, GMP k 92.6 0.043 1.5E-06 52.1 2.1 25 151-175 27-52 (231)
405 3p32_A Probable GTPase RV1496/ 92.6 0.22 7.5E-06 50.7 7.6 39 139-177 65-105 (355)
406 3r20_A Cytidylate kinase; stru 92.6 0.074 2.5E-06 50.3 3.7 26 151-176 9-34 (233)
407 2pez_A Bifunctional 3'-phospho 92.6 0.075 2.6E-06 48.0 3.7 26 151-176 5-30 (179)
408 3b9q_A Chloroplast SRP recepto 92.6 0.068 2.3E-06 53.0 3.6 27 151-177 100-126 (302)
409 3b85_A Phosphate starvation-in 92.5 0.055 1.9E-06 50.4 2.7 23 152-174 23-45 (208)
410 3io3_A DEHA2D07832P; chaperone 92.5 0.16 5.6E-06 51.2 6.4 48 146-195 13-62 (348)
411 2pcj_A ABC transporter, lipopr 92.5 0.055 1.9E-06 51.1 2.7 24 152-175 31-54 (224)
412 1vht_A Dephospho-COA kinase; s 92.5 0.081 2.8E-06 49.6 3.8 23 151-173 4-26 (218)
413 2f6r_A COA synthase, bifunctio 92.4 0.074 2.5E-06 52.2 3.6 24 150-173 74-97 (281)
414 2r6a_A DNAB helicase, replicat 92.4 0.31 1.1E-05 51.4 8.7 50 151-203 203-252 (454)
415 1zu4_A FTSY; GTPase, signal re 92.4 0.12 4.1E-06 51.6 5.2 39 150-190 104-142 (320)
416 3iqw_A Tail-anchored protein t 92.4 0.19 6.4E-06 50.5 6.5 49 146-196 11-59 (334)
417 3ake_A Cytidylate kinase; CMP 92.3 0.084 2.9E-06 48.9 3.7 25 152-176 3-27 (208)
418 2zts_A Putative uncharacterize 92.3 0.23 7.9E-06 47.4 7.0 49 151-202 30-78 (251)
419 3crm_A TRNA delta(2)-isopenten 92.3 0.08 2.7E-06 52.6 3.6 25 152-176 6-30 (323)
420 2cbz_A Multidrug resistance-as 92.2 0.066 2.2E-06 51.0 2.9 25 151-175 31-55 (237)
421 3exa_A TRNA delta(2)-isopenten 92.2 0.08 2.7E-06 52.1 3.5 25 151-175 3-27 (322)
422 3gfo_A Cobalt import ATP-bindi 92.1 0.066 2.3E-06 52.2 2.8 24 151-174 34-57 (275)
423 1b0u_A Histidine permease; ABC 92.1 0.067 2.3E-06 51.8 2.8 25 151-175 32-56 (262)
424 3be4_A Adenylate kinase; malar 92.1 0.08 2.7E-06 49.7 3.2 25 152-176 6-30 (217)
425 2d2e_A SUFC protein; ABC-ATPas 92.1 0.082 2.8E-06 50.8 3.4 23 152-174 30-52 (250)
426 1ak2_A Adenylate kinase isoenz 92.0 0.11 3.7E-06 49.4 4.1 26 151-176 16-41 (233)
427 3foz_A TRNA delta(2)-isopenten 92.0 0.11 3.7E-06 51.1 4.1 27 150-176 9-35 (316)
428 3bgw_A DNAB-like replicative h 91.9 0.65 2.2E-05 48.6 10.4 50 151-204 197-246 (444)
429 1ji0_A ABC transporter; ATP bi 91.9 0.073 2.5E-06 50.8 2.8 24 152-175 33-56 (240)
430 1q57_A DNA primase/helicase; d 91.9 0.57 1.9E-05 50.2 10.2 56 151-209 242-298 (503)
431 2zu0_C Probable ATP-dependent 91.9 0.085 2.9E-06 51.3 3.3 24 151-174 46-69 (267)
432 3a8t_A Adenylate isopentenyltr 91.9 0.079 2.7E-06 52.9 3.1 26 151-176 40-65 (339)
433 1oix_A RAS-related protein RAB 91.9 0.092 3.1E-06 48.0 3.4 25 151-175 29-53 (191)
434 1g6h_A High-affinity branched- 91.9 0.075 2.6E-06 51.4 2.8 24 152-175 34-57 (257)
435 4g1u_C Hemin import ATP-bindin 91.9 0.074 2.5E-06 51.6 2.8 25 151-175 37-61 (266)
436 2pze_A Cystic fibrosis transme 91.9 0.077 2.6E-06 50.3 2.8 26 151-176 34-59 (229)
437 3sr0_A Adenylate kinase; phosp 91.8 0.11 3.7E-06 48.3 3.7 24 153-176 2-25 (206)
438 2xb4_A Adenylate kinase; ATP-b 91.8 0.1 3.5E-06 49.2 3.7 23 153-175 2-24 (223)
439 3upu_A ATP-dependent DNA helic 91.8 0.3 1E-05 51.7 7.7 44 134-178 29-72 (459)
440 3gmt_A Adenylate kinase; ssgci 91.8 0.58 2E-05 43.9 8.7 25 152-176 9-33 (230)
441 2og2_A Putative signal recogni 91.8 0.099 3.4E-06 53.0 3.7 27 151-177 157-183 (359)
442 1sgw_A Putative ABC transporte 91.8 0.066 2.2E-06 50.1 2.2 24 152-175 36-59 (214)
443 2olj_A Amino acid ABC transpor 91.8 0.086 2.9E-06 51.0 3.1 25 151-175 50-74 (263)
444 1a7j_A Phosphoribulokinase; tr 91.8 0.06 2E-06 53.1 2.0 27 150-176 4-30 (290)
445 1e4v_A Adenylate kinase; trans 91.8 0.1 3.5E-06 48.8 3.6 24 153-176 2-25 (214)
446 2ff7_A Alpha-hemolysin translo 91.7 0.079 2.7E-06 50.8 2.8 24 152-175 36-59 (247)
447 1cp2_A CP2, nitrogenase iron p 91.7 0.19 6.4E-06 48.8 5.6 38 152-191 2-39 (269)
448 1mv5_A LMRA, multidrug resista 91.7 0.081 2.8E-06 50.7 2.8 24 151-174 28-51 (243)
449 1yrb_A ATP(GTP)binding protein 91.7 0.13 4.4E-06 49.8 4.3 26 151-176 14-39 (262)
450 1vpl_A ABC transporter, ATP-bi 91.6 0.083 2.8E-06 50.9 2.8 25 151-175 41-65 (256)
451 4gzl_A RAS-related C3 botulinu 91.6 0.097 3.3E-06 48.5 3.2 37 139-175 18-54 (204)
452 2ghi_A Transport protein; mult 91.6 0.085 2.9E-06 51.0 2.9 24 151-174 46-69 (260)
453 2qe7_A ATP synthase subunit al 91.5 0.46 1.6E-05 49.8 8.4 87 151-241 162-265 (502)
454 2ixe_A Antigen peptide transpo 91.5 0.087 3E-06 51.3 2.8 25 151-175 45-69 (271)
455 2f9l_A RAB11B, member RAS onco 91.4 0.11 3.6E-06 47.9 3.3 24 152-175 6-29 (199)
456 2r9v_A ATP synthase subunit al 91.4 0.25 8.6E-06 51.8 6.3 86 152-241 176-278 (515)
457 2eyu_A Twitching motility prot 91.4 0.11 3.8E-06 50.2 3.5 110 149-270 23-135 (261)
458 2qi9_C Vitamin B12 import ATP- 91.4 0.09 3.1E-06 50.4 2.8 24 152-175 27-50 (249)
459 2v9p_A Replication protein E1; 91.4 0.12 4.1E-06 51.0 3.8 26 150-175 125-150 (305)
460 2yz2_A Putative ABC transporte 91.3 0.092 3.1E-06 51.0 2.8 25 151-175 33-57 (266)
461 2ihy_A ABC transporter, ATP-bi 91.3 0.092 3.2E-06 51.3 2.8 25 151-175 47-71 (279)
462 2wji_A Ferrous iron transport 91.3 0.12 4.1E-06 45.9 3.4 23 152-174 4-26 (165)
463 2ged_A SR-beta, signal recogni 91.3 0.23 7.8E-06 45.2 5.4 26 150-175 47-72 (193)
464 2nq2_C Hypothetical ABC transp 91.3 0.093 3.2E-06 50.5 2.8 24 152-175 32-55 (253)
465 2dyk_A GTP-binding protein; GT 91.3 0.12 4E-06 45.4 3.3 24 152-175 2-25 (161)
466 2r8r_A Sensor protein; KDPD, P 91.2 0.3 1E-05 45.5 6.1 38 153-192 8-45 (228)
467 2afh_E Nitrogenase iron protei 91.2 0.21 7.3E-06 49.1 5.5 40 151-192 2-41 (289)
468 3mfy_A V-type ATP synthase alp 91.2 0.44 1.5E-05 50.4 7.9 96 142-241 217-335 (588)
469 4eaq_A DTMP kinase, thymidylat 91.2 0.23 7.9E-06 46.9 5.4 27 151-177 26-52 (229)
470 3sop_A Neuronal-specific septi 91.1 0.12 4.1E-06 50.3 3.4 24 153-176 4-27 (270)
471 1ltq_A Polynucleotide kinase; 91.1 0.12 4.1E-06 51.2 3.5 23 152-174 3-25 (301)
472 2zej_A Dardarin, leucine-rich 91.0 0.11 3.8E-06 47.1 2.9 22 153-174 4-25 (184)
473 3zvl_A Bifunctional polynucleo 91.0 0.12 4E-06 54.0 3.4 27 149-175 256-282 (416)
474 1nlf_A Regulatory protein REPA 90.9 0.12 4.1E-06 50.6 3.3 42 151-192 30-79 (279)
475 1g8f_A Sulfate adenylyltransfe 90.9 0.22 7.7E-06 52.8 5.4 44 134-177 376-421 (511)
476 3hjn_A DTMP kinase, thymidylat 90.8 0.72 2.5E-05 42.3 8.3 49 153-203 2-50 (197)
477 4dzz_A Plasmid partitioning pr 90.8 0.24 8.1E-06 45.7 5.1 43 152-196 2-45 (206)
478 1tq4_A IIGP1, interferon-induc 90.8 0.16 5.6E-06 52.4 4.2 25 150-174 68-92 (413)
479 2qmh_A HPR kinase/phosphorylas 90.8 0.12 4E-06 47.2 2.8 24 152-175 35-58 (205)
480 1q3t_A Cytidylate kinase; nucl 90.7 0.18 6E-06 48.0 4.1 27 150-176 15-41 (236)
481 1fx0_A ATP synthase alpha chai 90.6 0.21 7.2E-06 52.4 4.9 86 152-241 164-266 (507)
482 1svm_A Large T antigen; AAA+ f 90.6 0.15 5.3E-06 52.0 3.8 27 149-175 167-193 (377)
483 2ce2_X GTPase HRAS; signaling 90.6 0.14 4.9E-06 44.9 3.2 23 153-175 5-27 (166)
484 3kjh_A CO dehydrogenase/acetyl 90.5 0.27 9.3E-06 46.9 5.4 40 154-195 3-42 (254)
485 2pjz_A Hypothetical protein ST 90.5 0.12 4.2E-06 50.0 2.8 25 151-175 30-54 (263)
486 3cwq_A Para family chromosome 90.5 0.35 1.2E-05 44.9 5.9 42 153-197 2-44 (209)
487 3ld9_A DTMP kinase, thymidylat 90.5 0.31 1.1E-05 45.6 5.5 30 148-177 18-47 (223)
488 4edh_A DTMP kinase, thymidylat 90.5 0.48 1.6E-05 44.1 6.8 28 151-178 6-33 (213)
489 3lv8_A DTMP kinase, thymidylat 90.5 0.41 1.4E-05 45.3 6.3 37 151-188 27-63 (236)
490 3fvq_A Fe(3+) IONS import ATP- 90.5 0.14 4.8E-06 51.8 3.3 26 151-176 30-55 (359)
491 3eph_A TRNA isopentenyltransfe 90.4 0.15 5.2E-06 52.1 3.5 25 152-176 3-27 (409)
492 3oaa_A ATP synthase subunit al 90.4 0.76 2.6E-05 48.0 8.7 87 151-241 162-265 (513)
493 1z2a_A RAS-related protein RAB 90.4 0.16 5.4E-06 44.9 3.3 24 152-175 6-29 (168)
494 2wjg_A FEOB, ferrous iron tran 90.3 0.15 5.2E-06 46.2 3.2 23 152-174 8-30 (188)
495 3vr4_A V-type sodium ATPase ca 90.3 0.56 1.9E-05 49.8 7.7 96 141-240 221-339 (600)
496 3tui_C Methionine import ATP-b 90.3 0.15 5.2E-06 51.6 3.3 25 151-175 54-78 (366)
497 2ck3_A ATP synthase subunit al 90.2 0.39 1.3E-05 50.4 6.5 91 151-241 162-273 (510)
498 4tmk_A Protein (thymidylate ki 90.2 0.47 1.6E-05 44.1 6.5 52 152-204 4-55 (213)
499 3nh6_A ATP-binding cassette SU 90.2 0.12 4E-06 51.2 2.4 26 150-175 79-104 (306)
500 3con_A GTPase NRAS; structural 90.1 0.16 5.6E-06 46.0 3.3 23 153-175 23-45 (190)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9e-42 Score=376.47 Aligned_cols=282 Identities=13% Similarity=0.126 Sum_probs=218.5
Q ss_pred cchHHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HhccCCCCCeEEEEEcCCCc--CHHHHHHHHHHH
Q 005747 133 ESRMSILNEITDALKNG---DVNTLGIYGIGGIGKTTLAKEVAR--RAENDKLFDQVVFSEVSESQ--DIRKIQREIADK 205 (679)
Q Consensus 133 ~gr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~l~~~i~~~ 205 (679)
+||++++++|.++|..+ +.++|+|+||||+||||||+++|+ +...+.+|++++||++++.+ +..+++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 689999999999999999999998 56777889999999999985 899999999999
Q ss_pred hCCCCC--c------cchhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhcccCC-
Q 005747 206 LGLKFD--E------ESESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKMD- 276 (679)
Q Consensus 206 l~~~~~--~------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~- 276 (679)
++.... . .+.......+.+.+..+|||||||||||+..++ .+. ..+||+||||||++.++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~-~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA-ASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG-CCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH-cCC
Confidence 986522 1 111223556666666334999999999998754 111 1279999999999998753 43
Q ss_pred CcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHHhcCCCCCC
Q 005747 277 SQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQLRRPSSTN 356 (679)
Q Consensus 277 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~ 356 (679)
....|++++|++++||+||.+.++.....+.+++++++|+++|+|+|||++++|+.|+. +. .+|...+.......
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~-~~-w~~~~~l~~~l~~~--- 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KT-FEKMAQLNNKLESR--- 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SS-HHHHHHHHHHHHHH---
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhcc-ch-HHHHHHhHHHhhcc---
Confidence 44689999999999999999999865545778899999999999999999999999986 32 33333332211000
Q ss_pred cCCchhhHHHHHHhhhcCCChhHHHHHHH-----------Hhccccc-CChhHHHHhhhcc--ccccc------------
Q 005747 357 LMNVQPTAYKAIKLSYDKLAGEELKNIFL-----------LIGYTAI-ASIDDLLMYGMGM--GYFKK------------ 410 (679)
Q Consensus 357 ~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp~-~~~~~li~~w~~~--g~~~~------------ 410 (679)
....+.+++.+||+.||++ +|.||+ |||+||+ ...+ ++.|+++ ||+..
T Consensus 359 ---~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 ---GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp ---CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH
T ss_pred ---cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH
Confidence 0234678899999999988 999999 9999996 4444 7899999 77632
Q ss_pred ------------------CCcEEeehhHHHHHHHHhhccc
Q 005747 411 ------------------KGLFSMHDVVRDVAISIASTEQ 432 (679)
Q Consensus 411 ------------------~~~~~mHdlv~~~~~~~~~~~~ 432 (679)
..+|+|||++|++|++++..++
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 2369999999999999887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-35 Score=359.21 Aligned_cols=295 Identities=21% Similarity=0.292 Sum_probs=228.0
Q ss_pred CCCCcccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc-CC-CCCeEEEEEcCCCcC--HHHH
Q 005747 125 PNKDYEAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAEN-DK-LFDQVVFSEVSESQD--IRKI 198 (679)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~v~~~~~--~~~l 198 (679)
++.+...|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. +|+.++||++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 44566789999999999999995 467899999999999999999999988543 23 457899999998543 4445
Q ss_pred HHHHHHHhCCCCCc-----cchhHHHHHHHHHHHc-CCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhc
Q 005747 199 QREIADKLGLKFDE-----ESESGRARRLHDRLKK-EKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLS 272 (679)
Q Consensus 199 ~~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 272 (679)
+..++..++..... .........+...+.. ++|+||||||||+..+|..+ .+||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 67777777654321 1222333444444431 34999999999998877754 57899999999998875
Q ss_pred ccCCCcceEEecC-CChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHHhcC
Q 005747 273 TKMDSQKNFSVSF-LKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQLRR 351 (679)
Q Consensus 273 ~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~l~~ 351 (679)
........+++.+ |+++++++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..|...++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh
Confidence 4456678899996 99999999999988643 233456799999999999999999999999744 579999988865
Q ss_pred CCCCCc----CCchhhHHHHHHhhhcCCChhHHHHHHHHhccccc---CChhHHHHhhhcccc--------------ccc
Q 005747 352 PSSTNL----MNVQPTAYKAIKLSYDKLAGEELKNIFLLIGYTAI---ASIDDLLMYGMGMGY--------------FKK 410 (679)
Q Consensus 352 ~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~---~~~~~li~~w~~~g~--------------~~~ 410 (679)
...... ......+..++.+||+.||++ .|.||+|||+||+ |+.+.++..|.+++. +..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEE
Confidence 443222 112357999999999999998 8999999999995 889999999975432 111
Q ss_pred --CC---cEEeehhHHHHHHHHhhcc
Q 005747 411 --KG---LFSMHDVVRDVAISIASTE 431 (679)
Q Consensus 411 --~~---~~~mHdlv~~~~~~~~~~~ 431 (679)
.+ +|+||+++|++++..+.++
T Consensus 427 ~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecCCCceEEEecHHHHHHHHhhhhHH
Confidence 22 5999999999999987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.2e-34 Score=319.36 Aligned_cols=262 Identities=19% Similarity=0.191 Sum_probs=203.0
Q ss_pred ccchHHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCe-EEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 132 FESRMSILNEITDALKN-GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQ-VVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 132 ~~gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
.+||++++++|.++|.+ ++.++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999975 56899999999999999999999998766677986 99999999999988888887754321
Q ss_pred ---CCcc-----c----hhHHHHHHHHHHH--cCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhcccC
Q 005747 210 ---FDEE-----S----ESGRARRLHDRLK--KEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLSTKM 275 (679)
Q Consensus 210 ---~~~~-----~----~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 275 (679)
.... . .......+.+.+. .+||+||||||||+...|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 1100 0 1122334444441 4789999999999988888652 68999999999988642 2
Q ss_pred CCcceEEec------CCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCC-ChhHHHHHHHH
Q 005747 276 DSQKNFSVS------FLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNN-SLFDWKDALEQ 348 (679)
Q Consensus 276 ~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~-~~~~w~~~l~~ 348 (679)
.....++++ +|+++|||+||.+..+.. ..++..+| |+|+||||+++|+.|+.+. +..+|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 223356666 899999999999986432 12333443 9999999999999999853 67788652
Q ss_pred hcCCCCCCcCCchhhHHHHHHhhhcCCChhHH-HHHHHHhccccc---CChhHHHHhhhcccc---------------cc
Q 005747 349 LRRPSSTNLMNVQPTAYKAIKLSYDKLAGEEL-KNIFLLIGYTAI---ASIDDLLMYGMGMGY---------------FK 409 (679)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~s~fp~---~~~~~li~~w~~~g~---------------~~ 409 (679)
+ ...+..+|.+||+.||++ . |.||++||+||+ |+.+.++..|.++|. +.
T Consensus 351 -------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 351 -------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp -------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred -------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 1 367899999999999998 7 999999999995 788889999987741 11
Q ss_pred c---CCcEEeehhHHHHH
Q 005747 410 K---KGLFSMHDVVRDVA 424 (679)
Q Consensus 410 ~---~~~~~mHdlv~~~~ 424 (679)
. ...|+|||++++++
T Consensus 419 ~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK 436 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh
Confidence 1 35799999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=300.61 Aligned_cols=287 Identities=22% Similarity=0.303 Sum_probs=213.7
Q ss_pred CCcccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc-CCCC-CeEEEEEcCCCcCHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAEN-DKLF-DQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~l~~~i 202 (679)
.....|+||+.++++|.+++. .++.++|+|+|+||+||||||++++++... ..+| +.++|++++.. +...+...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 455679999999999999997 356789999999999999999999987644 4568 58999999875 333444443
Q ss_pred ---HHHhCCCC-----CccchhHHHHHHHHHHHc-CCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcchhcc
Q 005747 203 ---ADKLGLKF-----DEESESGRARRLHDRLKK-EKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDTLST 273 (679)
Q Consensus 203 ---~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~ 273 (679)
+..++... ...+.......+...+.. ++++||||||+|+...+..+ .+|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 44555211 112223344555555553 27899999999987766543 468999999999887643
Q ss_pred cCCCcceEEe---cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcCCChhHHHHHHHHhc
Q 005747 274 KMDSQKNFSV---SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALRDNNSLFDWKDALEQLR 350 (679)
Q Consensus 274 ~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~~~~~~~~w~~~l~~l~ 350 (679)
.. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+|+|+..+|+.++.. ..+|..+++.+.
T Consensus 273 -~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~ 346 (591)
T 1z6t_A 273 -VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQ 346 (591)
T ss_dssp -CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred -cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHH
Confidence 22 344555 5899999999999998752 22234678999999999999999999999974 347998888876
Q ss_pred CCCCCCc----CCchhhHHHHHHhhhcCCChhHHHHHHHHhccccc---CChhHHHHhhhcc--------------cccc
Q 005747 351 RPSSTNL----MNVQPTAYKAIKLSYDKLAGEELKNIFLLIGYTAI---ASIDDLLMYGMGM--------------GYFK 409 (679)
Q Consensus 351 ~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~---~~~~~li~~w~~~--------------g~~~ 409 (679)
....... ......+..++..||+.||++ .|.||+++|+||. |+.+.+...|... +++.
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLF 425 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSE
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeE
Confidence 5432211 122457899999999999998 8999999999985 7778888888644 2222
Q ss_pred c-----CCcEEeehhHHHHHHHHh
Q 005747 410 K-----KGLFSMHDVVRDVAISIA 428 (679)
Q Consensus 410 ~-----~~~~~mHdlv~~~~~~~~ 428 (679)
. ...|+||++++++++...
T Consensus 426 ~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 426 CDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEETTEEEEECCHHHHHHHHHHT
T ss_pred EecCCCccEEEEcHHHHHHHHhhh
Confidence 1 237999999999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.6e-24 Score=223.21 Aligned_cols=223 Identities=19% Similarity=0.204 Sum_probs=191.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
.+++.|++++|.++.+|+.+.++++|++|+|++|.++. +..++++++|++|+|++|.++.+|..++.+++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 58999999999999999999999999999999999988 56699999999999999999999999999999999999999
Q ss_pred cCccccChhhhc---------CCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-ccccc
Q 005747 519 RELEIIPPNVLS---------KLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKL 588 (679)
Q Consensus 519 ~~~~~lp~~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L 588 (679)
+.++.+|.. +. ++++|++|++++|.+ . .+|..++++++|++|++++|.++.+|..+ .+++|
T Consensus 161 ~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l-------~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 161 PELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI-------R-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp TTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC-------C-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CCccccChh-HhhccchhhhccCCCCCEEECcCCCc-------C-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 989999987 44 499999999999998 3 56778999999999999999999999888 89999
Q ss_pred ceeEEEEcCccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEE
Q 005747 589 ERYKILIGGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLY 664 (679)
Q Consensus 589 ~~L~l~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~ 664 (679)
+.|++++|...... .....++.|.++.|......+.....+++|+.|+|++|+ .+..+|..+ ..+++|+.++
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~--~~~~iP~~l--~~L~~L~~l~ 307 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV--NLSRLPSLI--AQLPANCIIL 307 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT--TCCCCCGGG--GGSCTTCEEE
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC--chhhccHHH--hhccCceEEe
Confidence 99999987765432 224577888888776665555445667899999999988 777888777 7889999999
Q ss_pred EecCcCccCCC
Q 005747 665 IRGSHLTLNPA 675 (679)
Q Consensus 665 l~~n~l~~lp~ 675 (679)
+..|.+..++.
T Consensus 308 l~~~~~~~l~~ 318 (328)
T 4fcg_A 308 VPPHLQAQLDQ 318 (328)
T ss_dssp CCGGGSCC---
T ss_pred CCHHHHHHHhh
Confidence 98888776543
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.8e-23 Score=212.72 Aligned_cols=223 Identities=18% Similarity=0.187 Sum_probs=173.8
Q ss_pred CceEEEEeecccCC---CCCccccCCCCCCEEEcCC-CCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCE
Q 005747 440 EQVRVINVSYMNLL---SLPSSLGLLSNLQTLSLYN-CKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRL 512 (679)
Q Consensus 440 ~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~L~~-n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~ 512 (679)
.+++.|++++|.+. .+|+.|.++++|++|++++ |.+.+ +..++++++|++|+|++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47889999999888 4788899999999999985 77765 567889999999999999988 78888899999999
Q ss_pred EeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccC-CCcEEEEEeecCC-CCCCcc-cccccc
Q 005747 513 LDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK-HLISLELQIQDVN-TLPRGL-FLEKLE 589 (679)
Q Consensus 513 L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~-~lp~~~-~l~~L~ 589 (679)
|++++|.+.+.+|.. +..+++|++|++++|.+ .+.+|..+.+++ +|+.|++++|.++ .+|..+ .+. |+
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcc-------cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 999998876678876 78899999999999988 667788888887 8899999988887 666666 444 88
Q ss_pred eeEEEEcCccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEE
Q 005747 590 RYKILIGGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYI 665 (679)
Q Consensus 590 ~L~l~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l 665 (679)
.|++++|.+.... .....++.|.++.|.....++. ...+++|+.|+|++|++. ..+|..+ ..+++|++|++
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~--~~~p~~l--~~l~~L~~L~L 275 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY--GTLPQGL--TQLKFLHSLNV 275 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE--ECCCGGG--GGCTTCCEEEC
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc--CcCChHH--hcCcCCCEEEC
Confidence 8888887765432 2345677888877665544443 344688889999888732 2455555 67888899999
Q ss_pred ecCcCc-cCCCC
Q 005747 666 RGSHLT-LNPAE 676 (679)
Q Consensus 666 ~~n~l~-~lp~~ 676 (679)
++|+++ .+|..
T Consensus 276 s~N~l~~~ip~~ 287 (313)
T 1ogq_A 276 SFNNLCGEIPQG 287 (313)
T ss_dssp CSSEEEEECCCS
T ss_pred cCCcccccCCCC
Confidence 998887 55653
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2e-22 Score=208.24 Aligned_cols=223 Identities=17% Similarity=0.278 Sum_probs=187.0
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
++++.|++++|.++.+++ .|.++++|++|+|++|.++. +..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 689999999999998876 68999999999999999988 4679999999999999999999998765 799999999
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEc
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIG 596 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~ 596 (679)
+|. +..++...+.++++|++|++++|.+.. .+..+..+.++++|+.|++++|.++.+|..+. ++|+.|++++|
T Consensus 130 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n 202 (330)
T 1xku_A 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGN 202 (330)
T ss_dssp SSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTS
T ss_pred CCc-ccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCCC
Confidence 988 566777778999999999999998843 13567789999999999999999999987754 88999999888
Q ss_pred Cccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 597 GVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 597 ~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
.+.... .....++.|.++.|.....+...+..+++|+.|++++|+ +..+|..+ ..+++|++|++++|+++.
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~lp~~l--~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK---LVKVPGGL--ADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC---CSSCCTTT--TTCSSCCEEECCSSCCCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc---CccCChhh--ccCCCcCEEECCCCcCCc
Confidence 766542 233578888888877766665555667899999999987 44666665 778999999999999998
Q ss_pred CCCC
Q 005747 673 NPAE 676 (679)
Q Consensus 673 lp~~ 676 (679)
+|..
T Consensus 278 ~~~~ 281 (330)
T 1xku_A 278 IGSN 281 (330)
T ss_dssp CCTT
T ss_pred cChh
Confidence 8764
No 8
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.1e-22 Score=207.00 Aligned_cols=222 Identities=18% Similarity=0.265 Sum_probs=167.9
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
++++.|++++|.+..+++ .|.++++|++|++++|.++. +..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 589999999999998754 79999999999999999988 4679999999999999999999998766 899999999
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEc
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIG 596 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~ 596 (679)
+|. ++.+|...|.++++|++|++++|.+... +..+..+..+ +|+.|++++|.++.+|..+. ++|+.|++++|
T Consensus 132 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n 203 (332)
T 2ft3_A 132 DNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS-----GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHN 203 (332)
T ss_dssp SSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG-----GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSS
T ss_pred CCc-cCccCHhHhCCCccCCEEECCCCccccC-----CCCcccccCC-ccCEEECcCCCCCccCcccc-CCCCEEECCCC
Confidence 988 5667777689999999999999988431 2456667766 78888888888877776543 67777777777
Q ss_pred Ccccccc----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 597 GVWGWEY----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 597 ~~~~~~~----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
.+..... ....++.|.++.|.....++..+..+++|+.|++++|+ +..+|..+ ..+++|++|++++|+++.
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~~lp~~l--~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK---LSRVPAGL--PDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC---CCBCCTTG--GGCTTCCEEECCSSCCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc---CeecChhh--hcCccCCEEECCCCCCCc
Confidence 6655431 22356666666665555554444556777777777775 33555554 566777777777777777
Q ss_pred CCCC
Q 005747 673 NPAE 676 (679)
Q Consensus 673 lp~~ 676 (679)
+|..
T Consensus 279 ~~~~ 282 (332)
T 2ft3_A 279 VGVN 282 (332)
T ss_dssp CCTT
T ss_pred cChh
Confidence 6543
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=6.9e-22 Score=206.24 Aligned_cols=223 Identities=17% Similarity=0.211 Sum_probs=137.8
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l 515 (679)
++|++|++++|.++.+|. .|.++++|++|++++|.++.+ ..++++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 467777777777776655 566777777777777776662 3466777777777777777766654 566777777777
Q ss_pred cCCcCccccCh-hhhcCCcccceeecCCCC-CCcchhhhcccccccccccCCCcEEEEEeecCCCC-CCcc-ccccccee
Q 005747 516 RDCRELEIIPP-NVLSKLSHLEELYMGPRS-FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL-PRGL-FLEKLERY 591 (679)
Q Consensus 516 ~~n~~~~~lp~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~-~l~~L~~L 591 (679)
++|. +..+|. ..+.++++|++|++++|. + ....+..|.++++|++|++++|.++.+ |..+ .+++|+.|
T Consensus 132 ~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 132 LGNP-YKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp TTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCC-CcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 7765 445555 346667777777777663 3 233345566666666666666666544 3333 55556666
Q ss_pred EEEEcCcccccc----ccccccEEEEecCccccc-------------------------------hHHHHHHhcccceee
Q 005747 592 KILIGGVWGWEY----ADIWCREFKIDLDSKIRL-------------------------------KDGLILKLQGIEDLW 636 (679)
Q Consensus 592 ~l~~~~~~~~~~----~~~~l~~l~l~~~~~~~~-------------------------------~~~~~~~l~~L~~L~ 636 (679)
++++|.....+. ....++.|.++.|..... .+.....+++|+.|+
T Consensus 204 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp EEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred cCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 665555433321 123444444444332211 122344578999999
Q ss_pred ccccccccccccccccCcCCCCCccEEEEecCcCccCC
Q 005747 637 LSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 637 L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
+++|+ +..+|..+ +..+++|++|++++|+++..+
T Consensus 284 Ls~N~---l~~i~~~~-~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 284 FSRNQ---LKSVPDGI-FDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCSSC---CCCCCTTT-TTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCC---CCccCHHH-HhcCCCCCEEEeeCCCccCcC
Confidence 99987 44566554 467899999999999987543
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=211.67 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=132.3
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l 515 (679)
.+++.|++++|.++.+ |..|.++++|++|+|++|.++. +..|.++++|++|+|++|.++.+|.. +.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5778888888888766 3467788888888888888776 35678888888888888888877764 577888888888
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKI 593 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l 593 (679)
++|.+.+ +++..|.++++|++|++++|.+ .+..+..|.++++|+.|++++|.++.+|... .+++|+.|++
T Consensus 112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDL-------VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEEECCTTC-------CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCcccc-CChhHccccccCCEEECCCCcc-------ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 8877444 3333477888888888888777 4445556667777777777777766665432 5555555555
Q ss_pred EEcCcccccc----------------------------ccccccEEEEecCccccchHHHHHHhcccceeecccccc
Q 005747 594 LIGGVWGWEY----------------------------ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEE 642 (679)
Q Consensus 594 ~~~~~~~~~~----------------------------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 642 (679)
.+|.+..... ....++.|.++.+.....+...+..+++|+.|+|++|.+
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 5544332211 011456666666665555555566677788888877763
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.3e-22 Score=203.84 Aligned_cols=204 Identities=19% Similarity=0.173 Sum_probs=174.2
Q ss_pred CCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceee
Q 005747 461 LLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELY 539 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~ 539 (679)
...+++.|+|++|.++. ++.++++++|++|+|++|.++.+|..++.+++|++|+|++|.+ ..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHH-HhcCcCCCEEE
Confidence 35789999999999998 5668999999999999999999999999999999999999984 588987 89999999999
Q ss_pred cCCCCCCcchhhhccccccccc---------ccCCCcEEEEEeecCCCCCCcc-cccccceeEEEEcCccccccc---cc
Q 005747 540 MGPRSFDKWEVEVEGVKNASLH---------ELKHLISLELQIQDVNTLPRGL-FLEKLERYKILIGGVWGWEYA---DI 606 (679)
Q Consensus 540 l~~n~~~~~~~~~~~~~~~~l~---------~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~~~~~~~~~~---~~ 606 (679)
+++|.+ .+.+|..+. ++++|++|++++|.++.+|..+ .+++|+.|++++|.+...+.. ..
T Consensus 157 L~~n~~-------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 157 IRACPE-------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp EEEETT-------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred CCCCCC-------ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 999877 455666554 5999999999999999999888 899999999999998876432 34
Q ss_pred cccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcC-ccCCCCC
Q 005747 607 WCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHL-TLNPAES 677 (679)
Q Consensus 607 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l-~~lp~~~ 677 (679)
.++.|.++.|......+..+..+++|+.|+|++|+ ....+|..+ ..+++|++|+|++|++ +.+|..+
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS--NLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT--TCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC--chhhcchhh--hcCCCCCEEeCCCCCchhhccHHH
Confidence 78888888877666555555668999999999998 677777776 7899999999999885 5667643
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=5e-22 Score=214.60 Aligned_cols=222 Identities=18% Similarity=0.162 Sum_probs=184.4
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l 515 (679)
++++.|++++|.++.+ |..|.++++|++|+|++|.++. +..|.++++|++|+|++|.++.+|.. +..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6899999999999976 5579999999999999999988 36789999999999999999988765 788999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 595 (679)
++|. +..+|...|.++++|++|++++|... ....+..|.++++|+.|++++|.++.+|....+++|+.|++++
T Consensus 155 ~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 155 RNNP-IESIPSYAFNRVPSLMRLDLGELKKL------EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CCCC-cceeCHhHHhcCCcccEEeCCCCCCc------cccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 9988 66788777999999999999985442 2334457899999999999999999998655899999999999
Q ss_pred cCccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 596 GGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 596 ~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
|.+.... .....++.|.++.|......+..+..+++|+.|+|++|+ +..++... +..+++|+.|+|++|++.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~-~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN---LSSLPHDL-FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCTTS-STTCTTCCEEECCSSCEE
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc---CCccChHH-hccccCCCEEEccCCCcC
Confidence 8876653 233578888888877776666666678999999999987 44555544 467899999999999875
Q ss_pred c
Q 005747 672 L 672 (679)
Q Consensus 672 ~ 672 (679)
-
T Consensus 304 C 304 (452)
T 3zyi_A 304 C 304 (452)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=213.38 Aligned_cols=221 Identities=17% Similarity=0.210 Sum_probs=184.3
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
++++.|++++|.++.++ ..|.++++|++|+|++|.++. +..|.++++|++|+|++|.++.+|. .+..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67999999999999775 578999999999999999988 3679999999999999999998876 5889999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 595 (679)
++|. +..+|...|.++++|++|++++|... ....+..|.++++|+.|++++|.++.+|....+++|+.|++++
T Consensus 144 ~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRL------SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTT
T ss_pred CCCc-ccccCHHHhhhCcccCEeCCCCCCCc------ceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCC
Confidence 9988 66777777999999999999985542 3334557899999999999999999998755899999999999
Q ss_pred cCccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 596 GGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 596 ~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
|.+.... .....++.|.++.|.....++..+..+++|+.|+|++|+ +..++... +..+++|+.|+|++|++.
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~-~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN---LTLLPHDL-FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC---CCCCCTTT-TSSCTTCCEEECCSSCEE
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC---CCccChhH-hccccCCCEEEcCCCCcc
Confidence 8876653 233578888888887777666666678999999999987 44555544 467899999999999975
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3.5e-22 Score=204.18 Aligned_cols=222 Identities=17% Similarity=0.073 Sum_probs=184.2
Q ss_pred CceEEEEeecccCCCCCcc-ccCCCCCCEEEcCCCCCCC----chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLPSS-LGLLSNLQTLSLYNCKLLD----ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~----~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~ 514 (679)
++++.|++++|.++.+|.. |.++++|++|+|++|.++. +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5899999999999999875 6899999999999999885 3567789999999999999999999999999999999
Q ss_pred ccCCcCccccCh-hhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC--CCCcc-cccccce
Q 005747 515 LRDCRELEIIPP-NVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT--LPRGL-FLEKLER 590 (679)
Q Consensus 515 l~~n~~~~~lp~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--lp~~~-~l~~L~~ 590 (679)
+++|.+ ..++. ..+..+++|++|++++|.+ .+..+..+.++++|++|++++|.++. +|..+ .+++|+.
T Consensus 108 l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 108 FQHSNL-KQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTSEE-ESSTTTTTTTTCTTCCEEECTTSCC-------EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCcc-cccccchhhhhccCCCEEECCCCcC-------CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 999984 44543 4589999999999999998 56677889999999999999999985 67766 8999999
Q ss_pred eEEEEcCcccccc----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCC-CCccEEEE
Q 005747 591 YKILIGGVWGWEY----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGP-SQLKHLYI 665 (679)
Q Consensus 591 L~l~~~~~~~~~~----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~-~~L~~L~l 665 (679)
|++++|.+..... ....++.|.++.|.....+...+..+++|+.|++++|++.. ..+..+ ..+ ++|++|++
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~--~~~~~~L~~L~L 255 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT--SKKQEL--QHFPSSLAFLNL 255 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB--CSSSSC--CCCCTTCCEEEC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc--cCHHHH--HhhhccCCEEEc
Confidence 9999988766522 33578888888887766655555668999999999998332 233333 556 49999999
Q ss_pred ecCcCccC
Q 005747 666 RGSHLTLN 673 (679)
Q Consensus 666 ~~n~l~~l 673 (679)
++|+++..
T Consensus 256 ~~N~~~~~ 263 (306)
T 2z66_A 256 TQNDFACT 263 (306)
T ss_dssp TTCCEECS
T ss_pred cCCCeecc
Confidence 99998754
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2e-22 Score=206.24 Aligned_cols=221 Identities=12% Similarity=0.078 Sum_probs=185.6
Q ss_pred CceEEEEeec-ccCC-CCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEe
Q 005747 440 EQVRVINVSY-MNLL-SLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~-n~l~-~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~ 514 (679)
++|++|++++ |.+. .+|..|.++++|++|+|++|.++. +..+.++++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 7899999995 8887 689899999999999999999985 677999999999999999999 7899999999999999
Q ss_pred ccCCcCccccChhhhcCCc-ccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC-CCCcc-ccccccee
Q 005747 515 LRDCRELEIIPPNVLSKLS-HLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT-LPRGL-FLEKLERY 591 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~-~l~~L~~L 591 (679)
+++|.+.+.+|.. +..++ +|++|++++|.+ .+..|..+..++ |+.|++++|.++. .|..+ .+++|+.|
T Consensus 156 L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l-------~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 156 FDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp CCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CcCCcccCcCCHH-HhhhhhcCcEEECcCCee-------eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 9999977789988 78888 999999999998 677888999987 9999999999984 45445 89999999
Q ss_pred EEEEcCccccc---cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecC
Q 005747 592 KILIGGVWGWE---YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGS 668 (679)
Q Consensus 592 ~l~~~~~~~~~---~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n 668 (679)
++++|.+.... .....++.|+++.|......+..+..+++|+.|+|++|++. ..+| .. ..+++|+.|++++|
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~ip-~~--~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC--GEIP-QG--GNLQRFDVSAYANN 301 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE--EECC-CS--TTGGGSCGGGTCSS
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc--ccCC-CC--ccccccChHHhcCC
Confidence 99988876432 23357888999888776444444566899999999999833 2343 33 67899999999999
Q ss_pred c-CccCC
Q 005747 669 H-LTLNP 674 (679)
Q Consensus 669 ~-l~~lp 674 (679)
+ +...|
T Consensus 302 ~~lc~~p 308 (313)
T 1ogq_A 302 KCLCGSP 308 (313)
T ss_dssp SEEESTT
T ss_pred CCccCCC
Confidence 9 55544
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1e-21 Score=207.95 Aligned_cols=132 Identities=17% Similarity=0.328 Sum_probs=70.0
Q ss_pred CceEEEEeecccCCCCCcc-ccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPSS-LGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
.+++.|++++|.++.+|+. +..+++|++|++++|.++.+ ..+..+++|++|+|++|.++.+|. .++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4555555555555555543 34555555555555555542 345555555555555555554432 3455555555555
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL 579 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l 579 (679)
++|. +..+|...|+++++|++|++++|.+ .+..+..+.++++|++|++++|.++.+
T Consensus 125 ~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 125 ERND-LSSLPRGIFHNTPKLTTLSMSNNNL-------ERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCC-------CBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCc-cCcCCHHHhcCCCCCcEEECCCCcc-------CccChhhccCCCCCCEEECCCCcCCcc
Confidence 5554 3345554445555555555555555 333344455555555555555555443
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.4e-22 Score=224.80 Aligned_cols=232 Identities=13% Similarity=0.135 Sum_probs=159.5
Q ss_pred CceEEEEeecccCCC------------------CCcccc--CCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccc-
Q 005747 440 EQVRVINVSYMNLLS------------------LPSSLG--LLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSD- 496 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~- 496 (679)
++|++|++++|.++. +|+.++ ++++|++|+|++|.+.+ |..++++++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 567777777777776 777777 77777777777777655 5567777777777777776
Q ss_pred cc--ccchhhhcC------cCCCEEeccCCcCccccCh--hhhcCCcccceeecCCCCCC-cchhhh-------------
Q 005747 497 IK--RLPVEVGEL------TLLRLLDLRDCRELEIIPP--NVLSKLSHLEELYMGPRSFD-KWEVEV------------- 552 (679)
Q Consensus 497 i~--~lp~~i~~l------~~L~~L~l~~n~~~~~lp~--~~~~~l~~L~~L~l~~n~~~-~~~~~~------------- 552 (679)
++ .+|..++.+ ++|++|++++|.+. .+|. . ++++++|++|++++|.+. .++ .+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 66 367766665 77777777777644 6666 4 677777777777777664 221 00
Q ss_pred --cccccccccccCC-CcEEEEEeecCCCCCCcc-c--ccccceeEEEEcCcccccc-----------ccccccEEEEec
Q 005747 553 --EGVKNASLHELKH-LISLELQIQDVNTLPRGL-F--LEKLERYKILIGGVWGWEY-----------ADIWCREFKIDL 615 (679)
Q Consensus 553 --~~~~~~~l~~l~~-L~~L~l~~n~l~~lp~~~-~--l~~L~~L~l~~~~~~~~~~-----------~~~~l~~l~l~~ 615 (679)
-..+|..+.++++ |+.|++++|.++.+|..+ . +++|+.|++++|.+..... ....++.|.++.
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred CccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 0145666777777 888888877777777665 2 3477778777777654311 223677788888
Q ss_pred CccccchHHHHHHhcccceeeccccccccccccccccCc------CCCCCccEEEEecCcCccCCCCC
Q 005747 616 DSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDK------VGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 616 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~------~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
|.....+...+..+++|+.|+|++|++ ..+|..... ..+++|+.|+|++|.++.+|..+
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNML---TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCC---SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCC---CCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 777777777777789999999999873 355554411 11238999999999999888654
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.5e-21 Score=195.58 Aligned_cols=217 Identities=17% Similarity=0.180 Sum_probs=136.8
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccCCc
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~n~ 519 (679)
+.++.+++.++.+|..+ .++|++|++++|.++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45666666666666433 35666777766666662 3466666677777766666655 4556666667777776665
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcC
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGG 597 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~ 597 (679)
.++.+++..+..+++|++|++++|.+ .+..|..+.++++|++|++++|.++.++... .+++|+.|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGL-------QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcC-------CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 44455444466666677777766666 3444555666666777777666666665542 56666666666665
Q ss_pred cccccc----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 598 VWGWEY----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 598 ~~~~~~----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+...+. ....++.+.++.|......+..+..+++|+.|++++|+ +..++... +..+++|+.|++++|+++.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~-~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN---LSALPTEA-LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCHHH-HTTCTTCCEEECCSSCEEC
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc---CCcCCHHH-cccCcccCEEeccCCCccC
Confidence 554432 12355666666655544444444557889999999987 34444432 3678999999999998863
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=4.1e-21 Score=219.95 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=147.8
Q ss_pred CceEEEEeecccCCC------------------CCcccc--CCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccc-
Q 005747 440 EQVRVINVSYMNLLS------------------LPSSLG--LLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSD- 496 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~- 496 (679)
++|+.|++++|.++. +|+.++ ++++|++|+|++|.+.. |..++++++|++|+|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 677888888888876 777766 78888888888887655 5667777888888888776
Q ss_pred ccc--cchhhhcCc-------CCCEEeccCCcCccccCh--hhhcCCcccceeecCCCCCCcchh---------------
Q 005747 497 IKR--LPVEVGELT-------LLRLLDLRDCRELEIIPP--NVLSKLSHLEELYMGPRSFDKWEV--------------- 550 (679)
Q Consensus 497 i~~--lp~~i~~l~-------~L~~L~l~~n~~~~~lp~--~~~~~l~~L~~L~l~~n~~~~~~~--------------- 550 (679)
++. +|..++.++ +|++|+|++|.+. .+|. . ++++++|++|++++|.+..++.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence 663 677666655 7777777777644 6776 4 6777777777777776642210
Q ss_pred hhcccccccccccCC-CcEEEEEeecCCCCCCcc-cc--cccceeEEEEcCcccccc---------ccccccEEEEecCc
Q 005747 551 EVEGVKNASLHELKH-LISLELQIQDVNTLPRGL-FL--EKLERYKILIGGVWGWEY---------ADIWCREFKIDLDS 617 (679)
Q Consensus 551 ~~~~~~~~~l~~l~~-L~~L~l~~n~l~~lp~~~-~l--~~L~~L~l~~~~~~~~~~---------~~~~l~~l~l~~~~ 617 (679)
.+. .+|..+.++++ |+.|++++|.++.+|..+ .+ ++|+.|++++|.+..... ....++.|.++.|.
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 001 34555666666 666666666666666544 22 236666666665533211 11256677777777
Q ss_pred cccchHHHHHHhcccceeeccccccccccccccccCc------CCCCCccEEEEecCcCccCCCC
Q 005747 618 KIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDK------VGPSQLKHLYIRGSHLTLNPAE 676 (679)
Q Consensus 618 ~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~------~~~~~L~~L~l~~n~l~~lp~~ 676 (679)
....+..++..+++|+.|+|++|++. .+|..+.. ..+++|+.|+|++|+|+.+|..
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMT---SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCS---CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred CCccCHHHHccCCCCCEEECCCCcCC---ccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 76677777767788888888887633 44443311 1122677777777777666644
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=196.43 Aligned_cols=223 Identities=20% Similarity=0.190 Sum_probs=182.4
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccc-hhhhcCcCCCEEeccCCc
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~l~~n~ 519 (679)
.+.+++++.++.+|..+. ++|++|++++|.++.+ ..+.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 457889999999998765 5999999999999984 36999999999999999999875 569999999999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhccccc-ccccccCCCcEEEEEee-cCCCCCC-cc-cccccceeEEEE
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKN-ASLHELKHLISLELQIQ-DVNTLPR-GL-FLEKLERYKILI 595 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~lp~-~~-~l~~L~~L~l~~ 595 (679)
+..+|...++++++|++|++++|.+. ...+ ..+.++++|++|++++| .++.++. .+ .+++|+.|++++
T Consensus 112 -l~~~~~~~~~~l~~L~~L~L~~n~l~-------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 112 -LSNLSSSWFKPLSSLTFLNLLGNPYK-------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp -CSSCCHHHHTTCTTCSEEECTTCCCS-------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred -CCcCCHhHhCCCccCCEEECCCCCCc-------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 66788877899999999999999983 2222 47899999999999999 5777654 34 889999999999
Q ss_pred cCccccc----cccccccEEEEecCccccchHHHHHHhcccceeecccccccccc-------------------------
Q 005747 596 GGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVN------------------------- 646 (679)
Q Consensus 596 ~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~------------------------- 646 (679)
|.+.... .....++.|.++.|.....+......+++|+.|++++|.+..+.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 9876552 22347788888888877777777777899999999999854421
Q ss_pred ----ccccccCcCCCCCccEEEEecCcCccCCCCC
Q 005747 647 ----YFVNELDKVGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 647 ----~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
.+|..+ ..+++|+.|++++|.++.+|..+
T Consensus 264 ~~l~~l~~~l--~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 264 ESLFQVMKLL--NQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp HHHHHHHHHH--HTCTTCCEEECCSSCCCCCCTTT
T ss_pred cchhhhHHHH--hcccCCCEEECCCCCCCccCHHH
Confidence 122223 56789999999999999999764
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2e-21 Score=217.19 Aligned_cols=229 Identities=15% Similarity=0.148 Sum_probs=116.8
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l 515 (679)
++|++|++++|.++.+|+ .|+.+++|++|+|++|.++.+ ..|+++++|++|+|++|.++.+|..+ +.+++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 466667776666665543 566666777777777666662 34566677777777777666666543 66667777777
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhh---------cccccccccccCCCcEEEEEeecCCCCCCccccc
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEV---------EGVKNASLHELKHLISLELQIQDVNTLPRGLFLE 586 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~ 586 (679)
++|.+.+ +++..|+++++|++|++++|.+...+... .+.....+....+|+.|++++|.++.+|.. ..+
T Consensus 155 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-~~~ 232 (597)
T 3oja_B 155 SNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNV 232 (597)
T ss_dssp CSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-CCS
T ss_pred eCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc-cCC
Confidence 7666333 33333666677777777766663321100 000000111122233333333333322222 123
Q ss_pred ccceeEEEEcCccccc--cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEE
Q 005747 587 KLERYKILIGGVWGWE--YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLY 664 (679)
Q Consensus 587 ~L~~L~l~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~ 664 (679)
+|+.|++++|.+.... .....++.|.++.|.....++..+..+++|+.|+|++|. +..++... ..+++|+.|+
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~--~~l~~L~~L~ 307 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR---LVALNLYG--QPIPTLKVLD 307 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC---CCEEECSS--SCCTTCCEEE
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC---CCCCCccc--ccCCCCcEEE
Confidence 4444444444433321 122345555555555444433334445666666666654 22333332 4456666666
Q ss_pred EecCcCccCCC
Q 005747 665 IRGSHLTLNPA 675 (679)
Q Consensus 665 l~~n~l~~lp~ 675 (679)
|++|+++.+|.
T Consensus 308 Ls~N~l~~i~~ 318 (597)
T 3oja_B 308 LSHNHLLHVER 318 (597)
T ss_dssp CCSSCCCCCGG
T ss_pred CCCCCCCccCc
Confidence 66666655553
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=3.3e-21 Score=221.92 Aligned_cols=130 Identities=30% Similarity=0.390 Sum_probs=72.5
Q ss_pred CceEEEEeecccCC-CCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLL-SLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l 515 (679)
++|+.|++++|.++ .+|..+..+++|++|++++|.+++ +..++.+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 44555555555554 344455555555555555555543 344555555555555555555 44555555555555555
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
++|.+.+.+|.. ++.+++|++|++++|.+ .+.+|..++++++|+.|++++|.++
T Consensus 498 ~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 498 SNNRLTGEIPKW-IGRLENLAILKLSNNSF-------SGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CSSCCCSCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCccCCcCChH-HhcCCCCCEEECCCCcc-------cCcCCHHHcCCCCCCEEECCCCccC
Confidence 555554455554 55555555555555555 4455556666666666666666554
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.5e-20 Score=195.71 Aligned_cols=148 Identities=20% Similarity=0.308 Sum_probs=105.9
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|++|++++|.++.+|+ +..+++|++|++++|.++.++.+..+++|++|++++|.++.+|. +..+++|++|++++|.
T Consensus 66 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence 678888888888888876 88888888888888888887788888888888888888888776 7788888888888886
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
....++. +..+++|++|++++|.+.... + +..+++|+.|++++|.+..++....+++|+.|++++|...
T Consensus 144 ~~~~~~~--~~~l~~L~~L~l~~~~~~~~~-------~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 144 NLSDLSP--LSNMTGLNYLTVTESKVKDVT-------P--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp TCCCCGG--GTTCTTCCEEECCSSCCCCCG-------G--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred Ccccccc--hhhCCCCcEEEecCCCcCCch-------h--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 5655544 677888888888887763321 1 5566666666666666665554224455555555444433
Q ss_pred c
Q 005747 600 G 600 (679)
Q Consensus 600 ~ 600 (679)
.
T Consensus 213 ~ 213 (347)
T 4fmz_A 213 D 213 (347)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.4e-21 Score=205.39 Aligned_cols=223 Identities=20% Similarity=0.292 Sum_probs=187.4
Q ss_pred ceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccc-hhhhcCcCCCEEeccC
Q 005747 441 QVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLP-VEVGELTLLRLLDLRD 517 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~l~~ 517 (679)
..+.++.+++.++.+|..+. ++|++|+|++|.++. +..|.++++|++|+|++|.|+.++ ..+.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678899999999998665 799999999999988 467999999999999999999775 5789999999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEe-ecCCCCCCcc--cccccceeEEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
|. +..+|...|..+++|++|++++|.+ ....+..|.++++|+.|++++ |.+..++... .+++|+.|+++
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRNNPI-------ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCSCCC-------CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred Cc-CCccChhhhcccCCCCEEECCCCCc-------ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 98 6677777789999999999999998 445566899999999999997 6777777754 89999999999
Q ss_pred EcCccccccc--cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 595 IGGVWGWEYA--DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 595 ~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+|.+...+.. ...++.|+++.|.....++..+..+++|+.|+|++|++ ..+++.. +..+++|+.|+|++|+|+.
T Consensus 205 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~-~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV---SLIERNA-FDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp TSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC---CEECTTT-TTTCTTCCEEECCSSCCSC
T ss_pred CCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC---ceECHHH-hcCCCCCCEEECCCCcCCc
Confidence 9988776543 34788899988887777677677789999999999873 3333332 4778999999999999999
Q ss_pred CCCCC
Q 005747 673 NPAES 677 (679)
Q Consensus 673 lp~~~ 677 (679)
+|.+.
T Consensus 281 ~~~~~ 285 (452)
T 3zyi_A 281 LPHDL 285 (452)
T ss_dssp CCTTS
T ss_pred cChHH
Confidence 88653
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=8.3e-21 Score=204.25 Aligned_cols=223 Identities=20% Similarity=0.290 Sum_probs=187.3
Q ss_pred ceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccc-hhhhcCcCCCEEeccC
Q 005747 441 QVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLP-VEVGELTLLRLLDLRD 517 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~l~~ 517 (679)
..+.++.+++.++.+|..+. ++++.|+|++|.++. +..|.++++|++|+|++|.++.++ ..+..+++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45678899999999998765 789999999999988 367999999999999999999876 5789999999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEe-ecCCCCCCcc--cccccceeEEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
|. +..+|...|..+++|++|++++|.+ ....+..|.++++|+.|++++ |.+..++... .+++|+.|+++
T Consensus 122 n~-l~~~~~~~~~~l~~L~~L~L~~N~i-------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 122 NR-LTTIPNGAFVYLSKLKELWLRNNPI-------ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp SC-CSSCCTTTSCSCSSCCEEECCSCCC-------CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred Cc-CCeeCHhHhhccccCceeeCCCCcc-------cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 98 6677776699999999999999998 445567899999999999998 5667777654 89999999999
Q ss_pred EcCccccccc--cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 595 IGGVWGWEYA--DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 595 ~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+|.+..++.. ...++.|+++.|.....++..+..+++|+.|+|++|++ ..++... +..+++|+.|+|++|+|+.
T Consensus 194 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~-~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 194 MCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI---QVIERNA-FDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp TSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---CEECTTS-STTCTTCCEEECTTSCCCC
T ss_pred CCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce---eEEChhh-hcCCCCCCEEECCCCCCCc
Confidence 9988876543 34788899988877777666677789999999999874 3443332 4778999999999999999
Q ss_pred CCCCC
Q 005747 673 NPAES 677 (679)
Q Consensus 673 lp~~~ 677 (679)
+|.+.
T Consensus 270 ~~~~~ 274 (440)
T 3zyj_A 270 LPHDL 274 (440)
T ss_dssp CCTTT
T ss_pred cChhH
Confidence 88653
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=8e-21 Score=218.64 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=133.8
Q ss_pred CceEEEEeecccCC-CCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLL-SLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l 515 (679)
++|+.|++++|.++ .+|..+.++++|++|++++|.+++ +..++++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 57999999999988 678889999999999999999875 577899999999999999988 78888999999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC-CCCCcc-cccccceeEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TLPRGL-FLEKLERYKI 593 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~-~l~~L~~L~l 593 (679)
++|.+.+.+|.. +.++++|++|++++|.+ .+.+|.+++++++|+.|++++|.++ .+|..+ .+++|+.|++
T Consensus 474 ~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRL-------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp CSSCCCSCCCGG-GGGCTTCCEEECCSSCC-------CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred cCCcccCcCCHH-HhcCCCCCEEEccCCcc-------CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 999987788877 88999999999999998 6778889999999999999999998 677777 8889999998
Q ss_pred EEcCcc
Q 005747 594 LIGGVW 599 (679)
Q Consensus 594 ~~~~~~ 599 (679)
++|.+.
T Consensus 546 s~N~l~ 551 (768)
T 3rgz_A 546 NTNLFN 551 (768)
T ss_dssp CSSEEE
T ss_pred CCCccC
Confidence 877644
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=9.9e-21 Score=195.55 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=183.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~ 516 (679)
.+++.++++++.++.+|..+. ++|++|++++|.++.+ ..++++++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 368899999999999997664 7899999999999984 4699999999999999999977 7789999999999999
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC---CCCcc-cccccceeE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT---LPRGL-FLEKLERYK 592 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~-~l~~L~~L~ 592 (679)
+|. ++.+|... .++|++|++++|.+ .+..+..+.++++|+.|++++|.++. .+..+ .+++|+.|+
T Consensus 109 ~n~-l~~l~~~~---~~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 109 KNQ-LKELPEKM---PKTLQELRVHENEI-------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp SSC-CSBCCSSC---CTTCCEEECCSSCC-------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCc-CCccChhh---cccccEEECCCCcc-------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 988 66788763 38999999999998 45556678999999999999999973 34444 789999999
Q ss_pred EEEcCccccccc-cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 593 ILIGGVWGWEYA-DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 593 l~~~~~~~~~~~-~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
+++|.+..++.. ...++.|.++.|......+..+..+++|+.|++++|. +..++... +..+++|++|++++|+++
T Consensus 178 l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~-~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS---ISAVDNGS-LANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC---CCEECTTT-GGGSTTCCEEECCSSCCS
T ss_pred CCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc---CceeChhh-ccCCCCCCEEECCCCcCc
Confidence 999988776542 3578899998887766655556668999999999987 33343321 367899999999999999
Q ss_pred cCCCCC
Q 005747 672 LNPAES 677 (679)
Q Consensus 672 ~lp~~~ 677 (679)
.+|..+
T Consensus 254 ~lp~~l 259 (330)
T 1xku_A 254 KVPGGL 259 (330)
T ss_dssp SCCTTT
T ss_pred cCChhh
Confidence 998764
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=2.7e-21 Score=217.45 Aligned_cols=226 Identities=14% Similarity=0.182 Sum_probs=147.9
Q ss_pred CceEEEEeecccCCCCCc--cccCCCCCCEEEcCCCCCC-CchhhcCCCCCcEEEcccccccccchhhhcCcC-CCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS--SLGLLSNLQTLSLYNCKLL-DITVIRDLKKLEVLCLRGSDIKRLPVEVGELTL-LRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~-L~~L~l 515 (679)
++|++|++++|.++.+|. .++++++|++|++++|.++ .++.++.+++|++|++++|.++.+|..+..+++ |++|++
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence 579999999999999998 8999999999999999988 455888889999999999998888988888888 999999
Q ss_pred cCCcCccccChhhhcCCc--ccceeecCCCCCCcchhhhccccccccc-------ccCCCcEEEEEeecCCCCCCcc--c
Q 005747 516 RDCRELEIIPPNVLSKLS--HLEELYMGPRSFDKWEVEVEGVKNASLH-------ELKHLISLELQIQDVNTLPRGL--F 584 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~n~l~~lp~~~--~ 584 (679)
++|.+ ..+|.. +..++ +|++|++++|.+ .+..|..+. .+++|+.|++++|.++.+|..+ .
T Consensus 385 s~N~l-~~lp~~-~~~~~l~~L~~L~Ls~N~l-------~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 385 AHNKL-KYIPNI-FDAKSVSVMSAIDFSYNEI-------GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp CSSCC-SSCCSC-CCTTCSSCEEEEECCSSCT-------TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred cCCcC-cccchh-hhhcccCccCEEECcCCcC-------CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 99884 477865 55544 788888888877 344444444 4445555555555555555443 2
Q ss_pred ccccceeEEEEcCcc-------------------------------cccc-----ccccccEEEEecCccccchHHHHHH
Q 005747 585 LEKLERYKILIGGVW-------------------------------GWEY-----ADIWCREFKIDLDSKIRLKDGLILK 628 (679)
Q Consensus 585 l~~L~~L~l~~~~~~-------------------------------~~~~-----~~~~l~~l~l~~~~~~~~~~~~~~~ 628 (679)
+++|+.|++++|.+. .++. ....++.|.++.|.....+..+. .
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~ 534 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-N 534 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-G
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh-c
Confidence 445555555444444 3321 12234444444444333332222 2
Q ss_pred hcccceeeccccc---cc-cccccccccCcCCCCCccEEEEecCcCccCCCCC
Q 005747 629 LQGIEDLWLSDLE---ER-DVNYFVNELDKVGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 629 l~~L~~L~L~~~~---~~-~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
+++|+.|+|++|+ .+ ....+|..+ ..+++|++|+|++|+++.+|..+
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCCCBCCSCC
T ss_pred CCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCCcCCccCHhH
Confidence 4555555553321 00 223344444 55788888888888888887653
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.8e-20 Score=191.23 Aligned_cols=194 Identities=21% Similarity=0.295 Sum_probs=164.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.+..+| .+..+++|++|++++|.++.++.+..+++|++|+|++|.++.+| .+..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC
Confidence 68999999999999987 68999999999999999999666999999999999999999987 69999999999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..+|. +..+++|++|++++|.+.. ..+ +..+++|+.|++++|.++.++....+++|+.|++++|.+.
T Consensus 119 -l~~~~~--l~~l~~L~~L~l~~n~l~~-------~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 119 -ITDVTP--LAGLSNLQVLYLDLNQITN-------ISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186 (308)
T ss_dssp -CCCCGG--GTTCTTCCEEECCSSCCCC-------CGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred -CCCchh--hcCCCCCCEEECCCCccCc-------Ccc--ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC
Confidence 555664 8999999999999999843 222 8899999999999999998887338899999999887765
Q ss_pred ccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCC
Q 005747 600 GWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 600 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~ 675 (679)
..+. ...+++|+.|++++|++. .++ .+ ..+++|+.|++++|+++..|.
T Consensus 187 ~~~~----------------------l~~l~~L~~L~L~~N~l~---~~~-~l--~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 187 DISP----------------------LASLPNLIEVHLKNNQIS---DVS-PL--ANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCGG----------------------GGGCTTCCEEECTTSCCC---BCG-GG--TTCTTCCEEEEEEEEEECCCE
T ss_pred cChh----------------------hcCCCCCCEEEccCCccC---ccc-cc--cCCCCCCEEEccCCeeecCCe
Confidence 4321 234689999999998744 343 24 778999999999999988664
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=2e-20 Score=187.20 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=165.2
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l~ 516 (679)
.+.+.++++++.++.+|..+. ++|+.|+|++|.++.+ ..|.++++|++|+|++|.++.+|..+ ..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356789999999999997664 6899999999999884 46999999999999999999998765 789999999999
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
+|. +..+|...|..+++|++|++++|.+ .+..+..|.++++|++|++++|.++.+|... .+++|+.|+++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRNQL-------KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCCcc-------CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 988 6677777689999999999999998 5556677899999999999999999988764 78999999998
Q ss_pred EcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccC
Q 005747 595 IGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 595 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
+|.+...+. ..+..+++|+.|+|++|+ +..++... +..+++|+.|+|++|++...
T Consensus 166 ~n~l~~~~~--------------------~~~~~l~~L~~L~L~~N~---l~~~~~~~-~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 166 NNQLKRVPE--------------------GAFDKLTELKTLKLDNNQ---LKRVPEGA-FDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SSCCSCCCT--------------------TTTTTCTTCCEEECCSSC---CSCCCTTT-TTTCTTCCEEECCSSCBCCS
T ss_pred CCcCcEeCh--------------------hHhccCCCcCEEECCCCc---CCcCCHHH-hccccCCCEEEecCCCeeCC
Confidence 776554331 122346889999999987 44555543 36789999999999998644
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=7.5e-21 Score=201.33 Aligned_cols=223 Identities=15% Similarity=0.226 Sum_probs=141.8
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l 515 (679)
++|++|++++|.++.+++ .|..+++|++|+|++|.++.+ ..++++++|++|+|++|.++.+|..+ ..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 577888888888776654 677788888888888887772 44777888888888888888777654 67888888888
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcc-----------------------------------------
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEG----------------------------------------- 554 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------------------------------- 554 (679)
++|.+ ..+++..++.+++|++|++++|.+...+.....
T Consensus 149 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 149 SNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 88774 444444477778888888887776543210000
Q ss_pred -----------cccccccccCCCcEEEEEeecCCCC-CCcc-cccccceeEEEEcCcccccc---ccccccEEEEecCcc
Q 005747 555 -----------VKNASLHELKHLISLELQIQDVNTL-PRGL-FLEKLERYKILIGGVWGWEY---ADIWCREFKIDLDSK 618 (679)
Q Consensus 555 -----------~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~-~l~~L~~L~l~~~~~~~~~~---~~~~l~~l~l~~~~~ 618 (679)
..+..+..+++|++|++++|.++.+ |..+ .+++|+.|++++|.+..++. ..+.++.|.++.|..
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc
Confidence 0012345556666666666666644 3333 56667777776666555432 234566666666655
Q ss_pred ccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 619 IRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 619 ~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
...+..+ ..+++|+.|++++|++. .++ ...+++|+.|++++|+++
T Consensus 308 ~~~~~~~-~~l~~L~~L~L~~N~i~---~~~----~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 308 LHVERNQ-PQFDRLENLYLDHNSIV---TLK----LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCGGGH-HHHTTCSEEECCSSCCC---CCC----CCTTCCCSEEECCSSCEE
T ss_pred eecCccc-cccCcCCEEECCCCccc---eeC----chhhccCCEEEcCCCCcc
Confidence 5544443 33577777777776632 222 255677777777777764
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=3.5e-21 Score=197.54 Aligned_cols=211 Identities=14% Similarity=0.177 Sum_probs=176.7
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
++|+.|++++|.++.++ ..|.++++|++|+|++|.++....+..+++|++|++++|.++.+|. .++|++|++++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n 109 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCCcCEEECCCC
Confidence 58999999999999876 5799999999999999999886569999999999999999998773 489999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc-c--cccccceeEEEE
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG-L--FLEKLERYKILI 595 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~--~l~~L~~L~l~~ 595 (679)
. +..++.. .+++|++|++++|.+ .+..+..++.+++|+.|++++|.++.++.. + .+++|+.|++++
T Consensus 110 ~-l~~~~~~---~~~~L~~L~l~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 110 N-ISRVSCS---RGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp C-CSEEEEC---CCSSCEEEECCSSCC-------CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred c-cCCcCcc---ccCCCCEEECCCCCC-------CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 8 4455543 478999999999999 555667889999999999999999976543 2 578999999999
Q ss_pred cCccccccc--cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 596 GGVWGWEYA--DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 596 ~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
|.+...+.. ...++.|.++.|.....++. +..+++|+.|+|++|+ +..+|..+ ..+++|+.|++++|+++
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~---l~~l~~~~--~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK---LVLIEKAL--RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC---CCEECTTC--CCCTTCCEEECTTCCCB
T ss_pred CcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCc---ccchhhHh--hcCCCCCEEEccCCCcc
Confidence 987766433 55788999988877776665 4567999999999987 44566655 77899999999999997
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=204.16 Aligned_cols=224 Identities=20% Similarity=0.222 Sum_probs=118.2
Q ss_pred CceEEEEeecccCCCCCcc-ccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPSS-LGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l 515 (679)
++|+.|++++|.++.+|.. |.++++|++|+|++|.++. +..+.++++|++|+|++|.++.+ |..+..+++|+.|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 3455555555555555432 4555555555555555544 23455555555555555555543 234555555555555
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC-CCCCcc-cccccceeEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TLPRGL-FLEKLERYKI 593 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~-~l~~L~~L~l 593 (679)
++|. +..+|...+.++++|+.|++++|.+ .+..+..|..+++|+.|++++|... .+|... ...+|+.|++
T Consensus 160 ~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 160 EKCN-LTSIPTEALSHLHGLIVLRLRHLNI-------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp ESCC-CSSCCHHHHTTCTTCCEEEEESCCC-------CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCc-CcccChhHhcccCCCcEEeCCCCcC-------cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 5554 3344444455555555555555555 2333445555555666665554432 333333 3345666666
Q ss_pred EEcCccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 594 LIGGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 594 ~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
++|.+...+ .....++.|+++.|.....+...+..+++|+.|+|++|++. .+++.. +..+++|+.|+|++|.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~-~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA---VVEPYA-FRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS---EECTTT-BTTCTTCCEEECCSSC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc---eECHHH-hcCcccCCEEECCCCc
Confidence 666555443 12345666666666555544444445566777777766522 222211 2556666666666666
Q ss_pred CccCCC
Q 005747 670 LTLNPA 675 (679)
Q Consensus 670 l~~lp~ 675 (679)
++.+|.
T Consensus 308 l~~~~~ 313 (477)
T 2id5_A 308 LTTLEE 313 (477)
T ss_dssp CSCCCG
T ss_pred CceeCH
Confidence 666554
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.5e-20 Score=203.41 Aligned_cols=86 Identities=27% Similarity=0.478 Sum_probs=56.9
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCC--chh--hcCCCCCcEEEccccccccc-chh-hhcCcCCCE
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLD--ITV--IRDLKKLEVLCLRGSDIKRL-PVE-VGELTLLRL 512 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~L~~n~i~~l-p~~-i~~l~~L~~ 512 (679)
++|++|++++|.++.+ |..|.++++|++|+|++|.+++ +.. ++++++|++|+|++|.++.+ |.. +..+++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 5677777777777654 5566777777777777777765 333 66777777777777777755 433 567777777
Q ss_pred EeccCCcCccccC
Q 005747 513 LDLRDCRELEIIP 525 (679)
Q Consensus 513 L~l~~n~~~~~lp 525 (679)
|++++|.+.+..|
T Consensus 159 L~L~~n~l~~~~~ 171 (455)
T 3v47_A 159 LDLTFNKVKSICE 171 (455)
T ss_dssp EECTTCCBSCCCT
T ss_pred EeCCCCcccccCh
Confidence 7777776444433
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.4e-20 Score=208.58 Aligned_cols=220 Identities=15% Similarity=0.184 Sum_probs=166.2
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc-h-hhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI-T-VIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
++|+.|++++|.++.+|+ .|+++++|++|+|++|.++.+ + .|+++++|++|+|++|.++.+|+ .++.+++|++|++
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 789999999999998866 479999999999999999984 3 37899999999999999997755 6899999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCc-------------------chhhhc------------ccccccccccC
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDK-------------------WEVEVE------------GVKNASLHELK 564 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~-------------------~~~~~~------------~~~~~~l~~l~ 564 (679)
++|. +..++. +.+++|++|++++|.+.. .+.... -..+..+..++
T Consensus 179 ~~N~-l~~~~~---~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~ 254 (597)
T 3oja_B 179 SSNR-LTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 254 (597)
T ss_dssp TTSC-CSBCCG---GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCT
T ss_pred cCCC-CCCcCh---hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCC
Confidence 9998 444553 334444444444443322 110000 01235678889
Q ss_pred CCcEEEEEeecCCCC-CCcc-cccccceeEEEEcCccccccc---cccccEEEEecCccccchHHHHHHhcccceeeccc
Q 005747 565 HLISLELQIQDVNTL-PRGL-FLEKLERYKILIGGVWGWEYA---DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSD 639 (679)
Q Consensus 565 ~L~~L~l~~n~l~~l-p~~~-~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 639 (679)
+|+.|++++|.++.+ |..+ .+++|+.|++++|.+..++.. .+.++.|.++.|.....+..+ ..+++|+.|+|++
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~ 333 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDH 333 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCS
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCC
Confidence 999999999999866 4445 789999999988887665432 457888888888777666665 4579999999999
Q ss_pred cccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 640 LEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 640 ~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
|++ ..++ ...+++|+.|++++|+++
T Consensus 334 N~l---~~~~----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 334 NSI---VTLK----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SCC---CCCC----CCTTCCCSEEECCSSCEE
T ss_pred CCC---CCcC----hhhcCCCCEEEeeCCCCC
Confidence 873 3332 367899999999999975
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.5e-20 Score=189.80 Aligned_cols=195 Identities=24% Similarity=0.331 Sum_probs=162.6
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~ 517 (679)
++++.++++++.++.+|..+. ++|+.|+|++|.++. +..+..+++|++|+|++|.++.+|.. +.+++|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 578999999999999998765 789999999999988 46799999999999999999988764 8899999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILI 595 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~ 595 (679)
|. +..+|.. +..+++|++|++++|.+ .+..+..|.++++|+.|++++|+++.+|... .+++|+.|++++
T Consensus 87 N~-l~~l~~~-~~~l~~L~~L~l~~N~l-------~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 87 NQ-LQSLPLL-GQTLPALTVLDVSFNRL-------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp SC-CSSCCCC-TTTCTTCCEEECCSSCC-------CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred Cc-CCcCchh-hccCCCCCEEECCCCcC-------cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 88 6678876 78999999999999998 5555678999999999999999999888765 788899888877
Q ss_pred cCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 596 GGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 596 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
|.+..++ ...+..+++|+.|+|++|+ +..+|..+ ..+++|+.|+|++|++.
T Consensus 158 N~l~~l~--------------------~~~~~~l~~L~~L~L~~N~---l~~ip~~~--~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELP--------------------AGLLNGLENLDTLLLQENS---LYTIPKGF--FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCC--------------------TTTTTTCTTCCEEECCSSC---CCCCCTTT--TTTCCCSEEECCSCCBC
T ss_pred CcCCccC--------------------HHHhcCcCCCCEEECCCCc---CCccChhh--cccccCCeEEeCCCCcc
Confidence 6654432 2233346889999999987 45666666 55678999999999875
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.1e-21 Score=207.90 Aligned_cols=211 Identities=14% Similarity=0.163 Sum_probs=177.4
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
++|+.|++++|.++.++ ..|..+++|++|+|++|.+++...++.+++|++|+|++|.++.+|. .++|++|++++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N 109 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCC
Confidence 48999999999999875 5799999999999999999885559999999999999999998874 389999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC-CCcc--cccccceeEEEE
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL-PRGL--FLEKLERYKILI 595 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~--~l~~L~~L~l~~ 595 (679)
.+. .+|.. .+++|++|++++|.+ .+..|..++++++|+.|++++|.++.+ |..+ .+++|+.|++++
T Consensus 110 ~l~-~~~~~---~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 110 NIS-RVSCS---RGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCC-CEEEC---CCSSCEEEECCSSCC-------CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCC-CCCcc---ccCCCCEEECCCCCC-------CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 854 44433 468999999999999 666778899999999999999999964 4444 579999999999
Q ss_pred cCccccccc--cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 596 GGVWGWEYA--DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 596 ~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
|.+...+.. ...++.|+++.|.....++. +..+++|+.|+|++|. +..+|..+ ..+++|+.|++++|+++
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~---l~~lp~~l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK---LVLIEKAL--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC---CCEECTTC--CCCTTCCEEECTTCCBC
T ss_pred CccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCc---Ccccchhh--ccCCCCCEEEcCCCCCc
Confidence 987766433 45788999988887777666 4567999999999987 44566665 77899999999999987
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.5e-20 Score=203.45 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=67.2
Q ss_pred CceEEEEeecccCC-CC-CccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccc-cchh--hhcCcCCCE
Q 005747 440 EQVRVINVSYMNLL-SL-PSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKR-LPVE--VGELTLLRL 512 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-~l-p~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~-lp~~--i~~l~~L~~ 512 (679)
++|++|++++|.+. .+ |..|.++++|++|+|++|.++. +..++++++|++|+|++|.++. +|.. +..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 46677777776665 33 3346667777777777776665 3456667777777777776663 3333 666677777
Q ss_pred EeccCCcCccccChhhhcCCcccceeecCCCCCC
Q 005747 513 LDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 513 L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~ 546 (679)
|++++|.+.+..|...+.++++|++|++++|.+.
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 7777766544445444566666666666666553
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1.9e-20 Score=188.24 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=139.5
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccc-hhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLP-VEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~l 515 (679)
++++.|++++|.++.+++ .|.++++|++|++++|.++.+ ..+.++++|++|+|++|.++.++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 467888888888877655 677788888888888877763 35777888888888888887665 45777888888888
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccc----
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLE---- 589 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~---- 589 (679)
++|.+ ..++...++.+++|++|++++|.+... .+|..+.++++|++|++++|.++.++... .+.+|+
T Consensus 108 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 108 VETNL-ASLENFPIGHLKTLKELNVAHNLIQSF------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCC------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred CCCCc-cccCchhcccCCCCCEEECcCCcccee------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 88773 444443377788888888888877321 24667778888888888888887665432 555555
Q ss_pred eeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 590 RYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 590 ~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
.|++++|.+.. .+...+. ..+|+.|++++|+ +..++... +..+++|+.|++++|+
T Consensus 181 ~L~ls~n~l~~--------------------~~~~~~~-~~~L~~L~L~~n~---l~~~~~~~-~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNF--------------------IQPGAFK-EIRLKELALDTNQ---LKSVPDGI-FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCE--------------------ECTTSSC-SCCEEEEECCSSC---CSCCCTTT-TTTCCSCCEEECCSSC
T ss_pred eeecCCCcccc--------------------cCccccC-CCcccEEECCCCc---eeecCHhH-hcccccccEEEccCCc
Confidence 44444444332 2222111 2479999999987 44555543 4678999999999999
Q ss_pred CccC
Q 005747 670 LTLN 673 (679)
Q Consensus 670 l~~l 673 (679)
++..
T Consensus 236 ~~c~ 239 (276)
T 2z62_A 236 WDCS 239 (276)
T ss_dssp BCCC
T ss_pred cccc
Confidence 8754
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.6e-20 Score=213.33 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=164.8
Q ss_pred CceEEEEeecccCCCCCc--cccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcC-CCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPS--SLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTL-LRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~-L~~L~l~ 516 (679)
++|+.|++++|.++.+|. .|+++++|+.|+|++|.++.++.++++++|++|+|++|.++.+|..+..+++ |+.|+|+
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 589999999999999998 8999999999999999988866889999999999999999999988999998 9999999
Q ss_pred CCcCccccChhhhcCCcc--cceeecCCCCCCcchhhhc---------------------ccccccc-cccCCCcEEEEE
Q 005747 517 DCRELEIIPPNVLSKLSH--LEELYMGPRSFDKWEVEVE---------------------GVKNASL-HELKHLISLELQ 572 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~--L~~L~l~~n~~~~~~~~~~---------------------~~~~~~l-~~l~~L~~L~l~ 572 (679)
+|. +..+|.. +..++. |+.|++++|.+......+. ..+|..+ ..+++|+.|+|+
T Consensus 628 ~N~-L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 628 HNK-LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705 (876)
T ss_dssp SSC-CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC
T ss_pred CCC-CCcCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC
Confidence 988 4477765 555543 7778877777632110000 0123222 356777777777
Q ss_pred eecCCCCCCcc-cc--------cccceeEEEEcCcccccc-----ccccccEEEEecCccccchHHHHHHhcccceeecc
Q 005747 573 IQDVNTLPRGL-FL--------EKLERYKILIGGVWGWEY-----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLS 638 (679)
Q Consensus 573 ~n~l~~lp~~~-~l--------~~L~~L~l~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~ 638 (679)
+|.++.+|... .. ++|+.|++++|.+..++. ....++.|.++.|.....+..+. .+++|+.|+|+
T Consensus 706 ~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls 784 (876)
T 4ecn_A 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIR 784 (876)
T ss_dssp SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCTTCCEEECC
T ss_pred CCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhh-cCCCCCEEECC
Confidence 77777777654 21 277777777777665543 23456777777666555444433 46777777776
Q ss_pred ccc---cc-cccccccccCcCCCCCccEEEEecCcCccCCCCC
Q 005747 639 DLE---ER-DVNYFVNELDKVGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 639 ~~~---~~-~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
+|+ .+ ....+|..+ ..+++|+.|+|++|+++.+|..+
T Consensus 785 ~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp CCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCCCBCCSCC
T ss_pred CCCCcccccccccChHHH--hcCCCCCEEECCCCCCCccCHhh
Confidence 632 01 233455455 66788888888888888888754
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.3e-20 Score=194.90 Aligned_cols=219 Identities=21% Similarity=0.262 Sum_probs=180.2
Q ss_pred ceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccC
Q 005747 441 QVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRD 517 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~ 517 (679)
+++.++++++.++.+|..+. ++|++|++++|.++.+ ..+.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 68899999999999998764 7999999999999883 5799999999999999999977 77899999999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC---CCCcc-cccccceeEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT---LPRGL-FLEKLERYKI 593 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~-~l~~L~~L~l 593 (679)
|. +..+|... . ++|++|++++|.+ ....+..|.++++|+.|++++|.++. .|..+ .+ +|+.|++
T Consensus 112 n~-l~~l~~~~-~--~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 112 NH-LVEIPPNL-P--SSLVELRIHDNRI-------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SC-CCSCCSSC-C--TTCCEEECCSSCC-------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred Cc-CCccCccc-c--ccCCEEECCCCcc-------CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 88 66888773 2 8999999999998 44455678999999999999999973 33344 44 9999999
Q ss_pred EEcCccccccc-cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 594 LIGGVWGWEYA-DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 594 ~~~~~~~~~~~-~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+.|.+..++.. ...++.|.++.|.....+...+..+++|+.|++++|+ +..+++.. +..+++|++|++++|+++.
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~---l~~~~~~~-~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ---IRMIENGS-LSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC---CCCCCTTG-GGGCTTCCEEECCSSCCCB
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc---CCcCChhH-hhCCCCCCEEECCCCcCee
Confidence 99988776543 2478888888877766665555667999999999987 34444322 3778999999999999999
Q ss_pred CCCCC
Q 005747 673 NPAES 677 (679)
Q Consensus 673 lp~~~ 677 (679)
+|..+
T Consensus 256 lp~~l 260 (332)
T 2ft3_A 256 VPAGL 260 (332)
T ss_dssp CCTTG
T ss_pred cChhh
Confidence 98754
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=204.71 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=82.7
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
++|++|++++|.++.++ ..|.++++|++|+|++|.++. +..|+++++|++|+|++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 57888888888888776 468888888888888888877 35688888888888888888888876 78888888888
Q ss_pred CCcCcc-ccChhhhcCCcccceeecCCCCCC
Q 005747 517 DCRELE-IIPPNVLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 517 ~n~~~~-~lp~~~~~~l~~L~~L~l~~n~~~ 546 (679)
+|.+.+ .+|.. |+++++|++|++++|.+.
T Consensus 99 ~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhh-hccCCcceEEEecCcccc
Confidence 887554 35555 788888888888888764
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=9.9e-20 Score=189.48 Aligned_cols=213 Identities=18% Similarity=0.181 Sum_probs=125.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.....++.+..+++|++|++++|.+...+.+..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC
Confidence 345555555553333333355555555555555555554445566666666666666655554 5556666666666655
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+ ..++. +..+++|++|++++|.+.. ..+ +..+++|++|++++|.++.++....+++|+.|++++|.+.
T Consensus 211 l-~~~~~--~~~~~~L~~L~l~~n~l~~-------~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 211 I-TDITP--VANMTRLNSLKIGNNKITD-------LSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp C-CCCGG--GGGCTTCCEEECCSSCCCC-------CGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred C-CCCch--hhcCCcCCEEEccCCccCC-------Ccc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccC
Confidence 2 23332 4566666666666666622 112 6677777777777777776654336777777777777665
Q ss_pred cccc--ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 600 GWEY--ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 600 ~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
.++. ....++.|.++.|......+..+..+++|+.|++++|++ ..+++ + ..+++|++|++++|+++
T Consensus 279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l---~~~~~-~--~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI---TDIRP-L--ASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC---CCCGG-G--GGCTTCSEESSSCC---
T ss_pred CChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc---ccccC-h--hhhhccceeehhhhccc
Confidence 5432 234667777776666555555566677777777777763 33332 3 56777777777777775
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=2.1e-20 Score=207.38 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=69.7
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCC-c-hhhcCCCCCcEEEcccccccc--cchhhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLD-I-TVIRDLKKLEVLCLRGSDIKR--LPVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~ 514 (679)
++|++|++++|.++.++ ..|.++++|++|+|++|.+++ + ..++++++|++|++++|.++. +|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 46667777777666554 356667777777777777666 2 236677777777777776663 345566677777777
Q ss_pred ccCCcCccccChhhhcCCcccceeecCCCCC
Q 005747 515 LRDCRELEIIPPNVLSKLSHLEELYMGPRSF 545 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~ 545 (679)
+++|...+.+|...++++++|++|++++|.+
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 7776656666654466777777777777766
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2.2e-20 Score=209.89 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=111.8
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l 515 (679)
+++++|++++|.++.+ |..|+++++|++|+|++|.++. +..|+++++|++|+|++|.++.+ |..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5788899999888876 5578888899999999888877 45688888999999998888865 667888888999998
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc-c-cccccc--ee
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG-L-FLEKLE--RY 591 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~-~l~~L~--~L 591 (679)
++|.+ ..+++..++++++|++|++++|.+. +..+..+..+++|++|++++|.++.++.. + .+++|+ .|
T Consensus 113 ~~n~i-~~l~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 113 IQTGI-SSIDFIPLHNQKTLESLYLGSNHIS-------SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTSCC-SCGGGSCCTTCTTCCEEECCSSCCC-------CCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred cccCc-ccCCcchhccCCcccEEECCCCccc-------ccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 88874 4443333788888888888888883 32223334477888888888877766443 2 666666 55
Q ss_pred EEEEcCcc
Q 005747 592 KILIGGVW 599 (679)
Q Consensus 592 ~l~~~~~~ 599 (679)
+++.|.+.
T Consensus 185 ~l~~n~l~ 192 (606)
T 3t6q_A 185 NLNGNDIA 192 (606)
T ss_dssp ECTTCCCC
T ss_pred ecCCCccC
Confidence 55555443
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=2.3e-20 Score=191.01 Aligned_cols=200 Identities=19% Similarity=0.181 Sum_probs=151.0
Q ss_pred CceEEEEeecccCC-CCCccc--cCCCCCCEEEcCCCCCCC-chhhcCC-----CCCcEEEcccccccccc-hhhhcCcC
Q 005747 440 EQVRVINVSYMNLL-SLPSSL--GLLSNLQTLSLYNCKLLD-ITVIRDL-----KKLEVLCLRGSDIKRLP-VEVGELTL 509 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-~lp~~~--~~l~~L~~L~L~~n~l~~-~~~~~~l-----~~L~~L~L~~n~i~~lp-~~i~~l~~ 509 (679)
++|++|++++|.++ .+|..+ ..+++|++|+|++|.++. +..++.+ ++|++|+|++|.++.+| ..++.+++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 57899999999988 577765 888999999999999887 4556666 89999999999998776 67889999
Q ss_pred CCEEeccCCcCccc--cChh-hhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC--cc-
Q 005747 510 LRLLDLRDCRELEI--IPPN-VLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR--GL- 583 (679)
Q Consensus 510 L~~L~l~~n~~~~~--lp~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~--~~- 583 (679)
|++|++++|.+.+. +|.. .+..+++|++|++++|.+...+ ......+.++++|+.|++++|.++..++ ..
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 99999999886654 2333 1378899999999999885321 1122344677899999999999986542 22
Q ss_pred cccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEE
Q 005747 584 FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHL 663 (679)
Q Consensus 584 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L 663 (679)
.+++|+.|++++|.+..++. .+ +++|+.|+|++|++ ..+|. + ..+++|++|
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~--------------------~~---~~~L~~L~Ls~N~l---~~~p~-~--~~l~~L~~L 301 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPK--------------------GL---PAKLSVLDLSYNRL---DRNPS-P--DELPQVGNL 301 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCS--------------------SC---CSEEEEEECCSSCC---CSCCC-T--TTSCEEEEE
T ss_pred hcCCCCEEECCCCccChhhh--------------------hc---cCCceEEECCCCCC---CCChh-H--hhCCCCCEE
Confidence 57888888887776553321 11 16899999999974 44443 4 788999999
Q ss_pred EEecCcCcc
Q 005747 664 YIRGSHLTL 672 (679)
Q Consensus 664 ~l~~n~l~~ 672 (679)
++++|+++.
T Consensus 302 ~L~~N~l~~ 310 (312)
T 1wwl_A 302 SLKGNPFLD 310 (312)
T ss_dssp ECTTCTTTC
T ss_pred eccCCCCCC
Confidence 999999975
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=3.8e-20 Score=185.38 Aligned_cols=197 Identities=22% Similarity=0.365 Sum_probs=157.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n 518 (679)
++|+.|++++|.+..++ .+..+++|++|++++|.++.++.++.+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 68999999999998876 5889999999999999999988999999999999999999988764 689999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIG 596 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~ 596 (679)
. +..+|+..++.+++|++|++++|.+ .+..+..+.++++|+.|++++|.++.++... .+++|+.|++++|
T Consensus 120 ~-l~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 120 Q-LQSLPDGVFDKLTNLTYLNLAHNQL-------QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred c-CCccCHHHhccCCCCCEEECCCCcc-------CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 8 5566666689999999999999988 4555667889999999999999999888764 7889999999887
Q ss_pred CccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc-cCCC
Q 005747 597 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT-LNPA 675 (679)
Q Consensus 597 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~-~lp~ 675 (679)
.+...+. ..+..+++|+.|++++|.+ ...+|+|+.|++++|.++ .+|.
T Consensus 192 ~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 192 QLKSVPD--------------------GVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSCCCT--------------------TTTTTCTTCCEEECCSSCB-----------CCCTTTTHHHHHHHHHTGGGBBC
T ss_pred cCCccCH--------------------HHHhCCcCCCEEEccCCCc-----------cccCcHHHHHHHHHHhCCCcccC
Confidence 7655432 1122346777777777651 133566677776666664 3444
Q ss_pred C
Q 005747 676 E 676 (679)
Q Consensus 676 ~ 676 (679)
.
T Consensus 241 ~ 241 (272)
T 3rfs_A 241 S 241 (272)
T ss_dssp T
T ss_pred c
Confidence 3
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=3.8e-20 Score=189.00 Aligned_cols=217 Identities=18% Similarity=0.117 Sum_probs=176.6
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCch--hhcCCCCCcEEEccccccccc---chhhhcCcCCCEEeccC
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDIT--VIRDLKKLEVLCLRGSDIKRL---PVEVGELTLLRLLDLRD 517 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~i~~l---p~~i~~l~~L~~L~l~~ 517 (679)
+.++.+++.++.+|..+. ++|++|+|++|.++.++ .+.++++|++|+|++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 468889999999997654 79999999999999843 378999999999999999865 67888999999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhccccc-ccccccCCCcEEEEEeecCCCCCCc-c-cccccceeEEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKN-ASLHELKHLISLELQIQDVNTLPRG-L-FLEKLERYKIL 594 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~l~ 594 (679)
|. +..+|.. +..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++.++.. + .+++|+.|+++
T Consensus 88 n~-i~~l~~~-~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 88 NG-VITMSSN-FLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CS-EEEEEEE-EETCTTCCEEECTTSEEE-------SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred Cc-cccChhh-cCCCCCCCEEECCCCccc-------ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 98 5678877 889999999999999883 3333 5788999999999999999855544 4 78999999998
Q ss_pred EcCccc--c---ccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 595 IGGVWG--W---EYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 595 ~~~~~~--~---~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
+|.+.. . ......++.|.++.|.....++..+..+++|+.|+|++|++. .++... +..+++|++|++++|+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~-~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF---SLDTFP-YKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS---BCCSGG-GTTCTTCCEEECTTSC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC---ccChhh-ccCcccCCEeECCCCC
Confidence 887654 2 223457889999888777665555666899999999999743 333322 3778999999999999
Q ss_pred CccCC
Q 005747 670 LTLNP 674 (679)
Q Consensus 670 l~~lp 674 (679)
++..+
T Consensus 235 l~~~~ 239 (306)
T 2z66_A 235 IMTSK 239 (306)
T ss_dssp CCBCS
T ss_pred CcccC
Confidence 98764
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=7.7e-20 Score=205.35 Aligned_cols=223 Identities=19% Similarity=0.154 Sum_probs=120.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccccc-ccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIK-RLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~-~lp~-~i~~l~~L~~L~l 515 (679)
++|+.|++++|.++.+|..+.++++|++|++++|.++. +..+..+++|++|++++|.+. .+|. .+..+++|++|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 34555555555555555555555555555555555554 234555555555555555544 3433 2455555555555
Q ss_pred cCCcCcccc--ChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC-CCc-c-cccccce
Q 005747 516 RDCRELEII--PPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL-PRG-L-FLEKLER 590 (679)
Q Consensus 516 ~~n~~~~~l--p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~-~-~l~~L~~ 590 (679)
++|.+.+.. |.. +..+++|++|++++|.+ .+..|..+.++++|+.|++++|.++.. |.. + .+++|+.
T Consensus 358 ~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 358 SHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEP-------LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp CSSCCCEEEESTTT-TTTCTTCCEEECCSCSC-------EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CCCccccccCcchh-cccCCCCCEEECCCCcC-------CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 555533222 222 45555555555555555 344555666666666666666666533 222 3 5666777
Q ss_pred eEEEEcCccccc----cccccccEEEEecCccccc---hHHHHHHhcccceeeccccccccccccccccCcCCCCCccEE
Q 005747 591 YKILIGGVWGWE----YADIWCREFKIDLDSKIRL---KDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHL 663 (679)
Q Consensus 591 L~l~~~~~~~~~----~~~~~l~~l~l~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L 663 (679)
|++++|.+.... .....++.|.++.|..... .......+++|+.|++++|+ +..+++.. +..+++|++|
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~-~~~l~~L~~L 505 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD---LSSIDQHA-FTSLKMMNHV 505 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC---CCEECTTT-TTTCTTCCEE
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc---cCccChhh-hccccCCCEE
Confidence 776666554432 1234566666665544321 11223446777777777776 33332221 2667788888
Q ss_pred EEecCcCccCC
Q 005747 664 YIRGSHLTLNP 674 (679)
Q Consensus 664 ~l~~n~l~~lp 674 (679)
++++|+++..+
T Consensus 506 ~Ls~N~l~~~~ 516 (606)
T 3t6q_A 506 DLSHNRLTSSS 516 (606)
T ss_dssp ECCSSCCCGGG
T ss_pred ECCCCccCcCC
Confidence 88888876553
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=1.5e-19 Score=200.75 Aligned_cols=103 Identities=20% Similarity=0.311 Sum_probs=87.2
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
++++.|++++|.++.+| ..|.++++|++|+|++|.++. +..|+++++|++|+|++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 57899999999999876 478899999999999999887 35688999999999999999999876 88999999999
Q ss_pred CCcCccccC--hhhhcCCcccceeecCCCCCC
Q 005747 517 DCRELEIIP--PNVLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 517 ~n~~~~~lp--~~~~~~l~~L~~L~l~~n~~~ 546 (679)
+|.+ ..+| .. |+++++|++|++++|.+.
T Consensus 130 ~N~l-~~l~~p~~-~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 130 FNDF-DVLPVCKE-FGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SSCC-SBCCCCGG-GGGCTTCCEEEEECSBCC
T ss_pred CCCc-cccCchHh-hcccCcccEEecCCCccc
Confidence 9884 4443 44 889999999999998874
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1e-19 Score=207.33 Aligned_cols=223 Identities=18% Similarity=0.148 Sum_probs=168.0
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
+++++|++++|.++.+|+ .|.++++|++|+|++|.++. +..++++++|++|+|++|.++.+|. .++.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999999998876 58999999999999999988 4668999999999999999999987 5899999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc----ccccccee
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL----FLEKLERY 591 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~----~l~~L~~L 591 (679)
++|.+ ..+|+..|+++++|++|++++|.+ .+..|..++++++|++|++++|.++.++... .+++|+.|
T Consensus 105 ~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 105 MSNSI-QKIKNNPFVKQKNLITLDLSHNGL-------SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp CSSCC-CCCCSCTTTTCTTCCEEECCSSCC-------SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCcc-CccChhHccccCCCCEEECCCCcc-------cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 99884 556655589999999999999988 5667778899999999999999998776542 45789999
Q ss_pred EEEEcCccccccc----c---------------------------ccccEEEEecCccccchHHHHHHhc--ccceeecc
Q 005747 592 KILIGGVWGWEYA----D---------------------------IWCREFKIDLDSKIRLKDGLILKLQ--GIEDLWLS 638 (679)
Q Consensus 592 ~l~~~~~~~~~~~----~---------------------------~~l~~l~l~~~~~~~~~~~~~~~l~--~L~~L~L~ 638 (679)
+++.|.+...... . ..++.|.++.+......+..+..++ +|+.|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 9988765544221 1 2344455544443333333233333 38888888
Q ss_pred ccccccccccccccCcCCCCCccEEEEecCcCccCC
Q 005747 639 DLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 639 ~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
+|++ ..+++.. +..+++|++|++++|.++..+
T Consensus 257 ~n~l---~~~~~~~-~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 257 YNNL---NVVGNDS-FAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp TSCC---CEECTTT-TTTCTTCCEEECCSCCBSEEC
T ss_pred CCCc---CccCccc-ccCcccccEeeCCCCccCccC
Confidence 7763 3333221 366788888888888876553
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.8e-19 Score=182.01 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=167.3
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEccccc-cccc-chhhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSD-IKRL-PVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~-i~~l-p~~i~~l~~L~~L~ 514 (679)
++++.|++++|.++.+|+ .|..+++|++|++++|.++. +..+.++++|++|++++|. ++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 689999999999998774 68999999999999999987 4679999999999999997 8887 66889999999999
Q ss_pred ccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc-c-cccccceeE
Q 005747 515 LRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG-L-FLEKLERYK 592 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~ 592 (679)
+++|.+. .+++..+.++++|++|++++|.+ ....+..|+++++|+.|++++|.++.+|.. + .+++|+.|+
T Consensus 112 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-------QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCC-EECHhHhhCCcCCCEEECCCCcc-------cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 9999854 45545589999999999999998 445566789999999999999999988875 3 789999999
Q ss_pred EEEcCccccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccc
Q 005747 593 ILIGGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEER 643 (679)
Q Consensus 593 l~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 643 (679)
+++|.+.... .....++.|+++.|.....+...+..+++|+.|++++|.+.
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9998876652 22357889999888887777777777899999999999843
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.6e-19 Score=198.50 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=110.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.++.+|. .+++|++|+|++|.++.++. .+++|++|+|++|.++.+|. .+++|+.|++++|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ 132 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC
Confidence 356666666666666654 35566666666666655433 55666666666666665554 34555555555554
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccc--------------cCCCcEEEEEeecCCCCCCcc--
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHE--------------LKHLISLELQIQDVNTLPRGL-- 583 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~--------------l~~L~~L~l~~n~l~~lp~~~-- 583 (679)
+..+|.. +++|++|++++|.+..++. .+..+.. +++|+.|++++|.++.+|...
T Consensus 133 -l~~lp~~----l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 133 -LTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp -CSCCCCC----CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred -CCcCCCC----CCCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccch
Confidence 3334432 2555555555555533211 1112222 256666666666666555431
Q ss_pred ----------------cccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccc
Q 005747 584 ----------------FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNY 647 (679)
Q Consensus 584 ----------------~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~ 647 (679)
.+++|+.|++++|.+..++.....++.|.++.|.....+. .+++|+.|+|++|+ +..
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~---L~~ 275 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQ---LTR 275 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC---CCS
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCC---CCc
Confidence 1245555555555555544444555566665554444333 34566666666665 334
Q ss_pred cccccCcCCCCCccEEEEecCcCcc
Q 005747 648 FVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 648 i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+|..+ ..+++|+.|+|++|+++.
T Consensus 276 lp~~l--~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 276 LPESL--IHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCGGG--GGSCTTCEEECCSCCCCH
T ss_pred CCHHH--hhccccCEEEecCCCCCC
Confidence 44444 556677777777776653
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=4.3e-19 Score=192.34 Aligned_cols=222 Identities=19% Similarity=0.200 Sum_probs=105.7
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|++|++++|.++.+|+ +.++++|++|++++|.++.++.++++++|++|++++|.++.+|. +..+++|++|++++|.
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT 145 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc
Confidence 455555555555555554 55555555555555555553335555555555555555555543 4555555555555544
Q ss_pred CccccCh-------------------hhhcCCcccceeecCCCCCCcchh---------------hhcccccccccccCC
Q 005747 520 ELEIIPP-------------------NVLSKLSHLEELYMGPRSFDKWEV---------------EVEGVKNASLHELKH 565 (679)
Q Consensus 520 ~~~~lp~-------------------~~~~~l~~L~~L~l~~n~~~~~~~---------------~~~~~~~~~l~~l~~ 565 (679)
+ ..+|. ..+.++++|++|++++|.+...+. .+.+..| ++.+++
T Consensus 146 l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 222 (466)
T 1o6v_A 146 I-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTN 222 (466)
T ss_dssp E-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTT
T ss_pred c-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCC
Confidence 2 22221 003445555555555555432110 0011111 334444
Q ss_pred CcEEEEEeecCCCCCCcccccccceeEEEEcCcccccc--ccccccEEEEecCccccchHHHHHHhcccceeeccccccc
Q 005747 566 LISLELQIQDVNTLPRGLFLEKLERYKILIGGVWGWEY--ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEER 643 (679)
Q Consensus 566 L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 643 (679)
|+.|++++|.++.++....+++|+.|++++|.+..... ....++.|.++.|.....++ ...+++|+.|++++|++.
T Consensus 223 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred CCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 44444444444444322244555555555444433321 12344555555444433332 233556666666665522
Q ss_pred cccccccccCcCCCCCccEEEEecCcCccCC
Q 005747 644 DVNYFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 644 ~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
.+++ + ..+++|+.|++++|+++..+
T Consensus 301 ---~~~~-~--~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 301 ---DISP-I--SNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp ---CCGG-G--GGCTTCSEEECCSSCCSCCG
T ss_pred ---Cchh-h--cCCCCCCEEECcCCcCCCch
Confidence 2222 2 45667777777777766554
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=1.1e-19 Score=204.15 Aligned_cols=218 Identities=13% Similarity=0.018 Sum_probs=107.9
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCC----------------------CCCC----chhhcCCCCCcEEEcc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNC----------------------KLLD----ITVIRDLKKLEVLCLR 493 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n----------------------~l~~----~~~~~~l~~L~~L~L~ 493 (679)
++|+.|++++|.+..+| .+ .+++|+.|++++| .++. +..+..+++|++|+++
T Consensus 307 ~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp CCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred ccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 45666666666666565 23 4555555555554 3332 1233444444444444
Q ss_pred cccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEe
Q 005747 494 GSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI 573 (679)
Q Consensus 494 ~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 573 (679)
+|.++.+|..+..+++|+.|++++|.+.+..|...+..+++|++|++++|.+ .+..|..+.++++|++|++++
T Consensus 385 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-------KIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp SCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC-------EECCTTTTTTCTTCCEEECTT
T ss_pred CCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC-------CccchhhhcCCCCCCEEECCC
Confidence 4444444444444555555555554433333322244555555555555544 334455555555556665555
Q ss_pred ecCCC--CCCcc-cccccceeEEEEcCccccc----cccccccEEEEecCccccchHHHHHHhcccceeecccccccccc
Q 005747 574 QDVNT--LPRGL-FLEKLERYKILIGGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVN 646 (679)
Q Consensus 574 n~l~~--lp~~~-~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~ 646 (679)
|.++. +|..+ .+++|+.|++++|.+.... .....++.|.++.|......+..+..+++|+.|++++|+ +.
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~---l~ 534 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR---IE 534 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC---CC
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc---Cc
Confidence 55553 34444 5555666655555544332 122345555555554444433334445556666666554 33
Q ss_pred ccccccCcCCCC-CccEEEEecCcCc
Q 005747 647 YFVNELDKVGPS-QLKHLYIRGSHLT 671 (679)
Q Consensus 647 ~i~~~l~~~~~~-~L~~L~l~~n~l~ 671 (679)
.+|..+ ..++ +|++|++++|++.
T Consensus 535 ~~p~~~--~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 535 TSKGIL--QHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CEESCG--GGSCTTCCEEECCSCCCC
T ss_pred ccCHhH--hhhcccCcEEEccCCCcc
Confidence 344433 3443 3666666666554
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=5.1e-19 Score=191.75 Aligned_cols=213 Identities=19% Similarity=0.228 Sum_probs=134.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchh---------------------hcCCCCCcEEEccccccc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITV---------------------IRDLKKLEVLCLRGSDIK 498 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~~l~~L~~L~L~~n~i~ 498 (679)
++|++|++++|.++.+|+ +.++++|++|++++|.++.++. +.++++|++|++++|.++
T Consensus 112 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence 445555555555555443 4555555555555555444322 223333444444444444
Q ss_pred ccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 499 RLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 499 ~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
.++ .+..+++|++|++++|.+.+ +++ ++.+++|++|++++|.+.. ...+..+++|+.|++++|.++.
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKD---------IGTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCC
T ss_pred CCh-hhccCCCCCEEEecCCcccc-ccc--ccccCCCCEEECCCCCccc---------chhhhcCCCCCEEECCCCcccc
Confidence 333 24444455555555544222 222 3445555555555555421 1357889999999999999998
Q ss_pred CCCcccccccceeEEEEcCcccccc--ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCC
Q 005747 579 LPRGLFLEKLERYKILIGGVWGWEY--ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVG 656 (679)
Q Consensus 579 lp~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~ 656 (679)
++....+++|+.|++++|.+...+. ....++.|.++.+.....++ ...+++|+.|++++|++.. +++ + ..
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~---~~~-~--~~ 329 (466)
T 1o6v_A 258 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD---ISP-V--SS 329 (466)
T ss_dssp CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC---CGG-G--GG
T ss_pred chhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC---chh-h--cc
Confidence 8774489999999999998776643 34578888888876665544 4568999999999997433 332 3 67
Q ss_pred CCCccEEEEecCcCccCC
Q 005747 657 PSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 657 ~~~L~~L~l~~n~l~~lp 674 (679)
+++|+.|++++|+++.+|
T Consensus 330 l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp CTTCCEEECCSSCCCCCG
T ss_pred CccCCEeECCCCccCCch
Confidence 899999999999998775
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=5.5e-19 Score=190.14 Aligned_cols=206 Identities=13% Similarity=0.106 Sum_probs=119.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|++|++++|.++.+| .+..+++|++|++++|.+++++ ++.+++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence 57788888888887776 5777888888888888877764 777788888888888877775 7777888888888876
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEee-cCCCCCCcccccccceeEEEEcCc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ-DVNTLPRGLFLEKLERYKILIGGV 598 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~~~~ 598 (679)
+ ..+| ++.+++|++|++++|.+... .++++++|+.|++++| .+..++ ...+++|+.|+++.|.+
T Consensus 118 l-~~l~---~~~l~~L~~L~l~~N~l~~l----------~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 118 L-TKLD---VSQNPLLTYLNCARNTLTEI----------DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp C-SCCC---CTTCTTCCEEECTTSCCSCC----------CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCC
T ss_pred C-Ceec---CCCCCcCCEEECCCCcccee----------ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCcc
Confidence 4 3354 56777888888887777322 1444555555555544 222331 11444555555554444
Q ss_pred ccccc-ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCC
Q 005747 599 WGWEY-ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 599 ~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
...+. ....++.+.++.|.....+ ...+++|+.|++++|++. .+| + ..+++|+.|++++|+++.+|
T Consensus 183 ~~l~l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~---~ip--~--~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 183 TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT---EID--V--TPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS---CCC--C--TTCTTCSEEECCSSCCSCCC
T ss_pred ceeccccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCccc---ccC--c--cccCCCCEEEeeCCcCCCcC
Confidence 43321 1123444444443332221 122345555555554422 222 2 34455555555555554443
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=207.24 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=115.8
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCC---chhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLD---ITVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~ 514 (679)
+++++|++++|.++.+ |..|.++++|++|+|++|.... +..|+++++|++|+|++|.++.+ |..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 6789999999999865 6678899999999999986443 46688999999999999998866 77888999999999
Q ss_pred ccCCcCccccCh-hhhcCCcccceeecCCCCCCcchhhhcccc-cccccccCCCcEEEEEeecCCCCC-Ccc-cc--ccc
Q 005747 515 LRDCRELEIIPP-NVLSKLSHLEELYMGPRSFDKWEVEVEGVK-NASLHELKHLISLELQIQDVNTLP-RGL-FL--EKL 588 (679)
Q Consensus 515 l~~n~~~~~lp~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~lp-~~~-~l--~~L 588 (679)
|++|.+.+.+|. ..++++++|++|++++|.+. +.. +..|+++++|++|++++|.++.+. ..+ .+ ++|
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-------~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-------SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-------CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCccc-------ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 999886665544 34788999999999998883 332 357888889999999988887543 333 33 555
Q ss_pred ceeEEEEcC
Q 005747 589 ERYKILIGG 597 (679)
Q Consensus 589 ~~L~l~~~~ 597 (679)
+.|+++.|.
T Consensus 177 ~~L~L~~n~ 185 (844)
T 3j0a_A 177 SFFSLAANS 185 (844)
T ss_dssp CCCEECCSB
T ss_pred ceEECCCCc
Confidence 555555444
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.5e-18 Score=174.28 Aligned_cols=199 Identities=20% Similarity=0.208 Sum_probs=158.7
Q ss_pred EEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcC
Q 005747 444 VINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRE 520 (679)
Q Consensus 444 ~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~ 520 (679)
.++.++..+..+|..+. ++|++|++++|.++.+ ..+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~- 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-
Confidence 45666777888887664 6899999999999883 478999999999999999998865 68999999999999998
Q ss_pred ccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC--CCCcc-cccccceeEEEEcC
Q 005747 521 LEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT--LPRGL-FLEKLERYKILIGG 597 (679)
Q Consensus 521 ~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--lp~~~-~l~~L~~L~l~~~~ 597 (679)
+..++...|.++++|++|++++|.+ .+..+..++++++|++|++++|.++. +|..+ .+++|+.|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCC-------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCccChhhhcCCccccEEECCCCCc-------cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 5556655589999999999999998 44455578999999999999999986 56666 88999999998776
Q ss_pred ccccccccccccEEEEecCccccchHHHHHHhcccc----eeeccccccccccccccccCcCCCCCccEEEEecCcCccC
Q 005747 598 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIE----DLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 598 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~----~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
+.... ...+..+++|+ .|++++|. +..++... ....+|+.|++++|.++.+
T Consensus 161 l~~~~--------------------~~~~~~l~~L~~l~l~L~ls~n~---l~~~~~~~--~~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 161 IQSIY--------------------CTDLRVLHQMPLLNLSLDLSLNP---MNFIQPGA--FKEIRLKELALDTNQLKSV 215 (276)
T ss_dssp CCEEC--------------------GGGGHHHHTCTTCCEEEECCSSC---CCEECTTS--SCSCCEEEEECCSSCCSCC
T ss_pred CCcCC--------------------HHHhhhhhhccccceeeecCCCc---ccccCccc--cCCCcccEEECCCCceeec
Confidence 54432 11222345565 89999987 44455544 3345899999999999999
Q ss_pred CCCC
Q 005747 674 PAES 677 (679)
Q Consensus 674 p~~~ 677 (679)
|..+
T Consensus 216 ~~~~ 219 (276)
T 2z62_A 216 PDGI 219 (276)
T ss_dssp CTTT
T ss_pred CHhH
Confidence 8753
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=205.20 Aligned_cols=83 Identities=28% Similarity=0.435 Sum_probs=43.5
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCC--chh--hcCCCCCcEEEccccccccc--chhhhcCcCCCE
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLD--ITV--IRDLKKLEVLCLRGSDIKRL--PVEVGELTLLRL 512 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~L~~n~i~~l--p~~i~~l~~L~~ 512 (679)
++|++|++++|.+..+ |..|.++++|++|+|++|.+++ +.. ++++++|++|+|++|.++.+ +..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 4555555555555543 4455555555555555555544 222 55555555555555555533 234555555555
Q ss_pred EeccCCcCcc
Q 005747 513 LDLRDCRELE 522 (679)
Q Consensus 513 L~l~~n~~~~ 522 (679)
|++++|.+.+
T Consensus 153 L~Ls~N~i~~ 162 (844)
T 3j0a_A 153 IDFSSNQIFL 162 (844)
T ss_dssp EEEESSCCCC
T ss_pred EECCCCcCCe
Confidence 5555555433
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=197.65 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=110.1
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccc-hhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLP-VEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~l 515 (679)
++++.|++++|.++.+++ .|.++++|++|+|++|.++.+ ..|+++++|++|+|++|.++.+| ..+..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 568888888888886644 678888888888888887773 45788888888888888888665 56788888888888
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcc-cccccccccCCCcEEEEEeecCCCCCCc-c-ccccc----
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEG-VKNASLHELKHLISLELQIQDVNTLPRG-L-FLEKL---- 588 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~-~l~~L---- 588 (679)
++|. +..+|...++++++|++|++++|.+ .+ .+|..|+++++|++|++++|.++.++.. + .+++|
T Consensus 108 ~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l-------~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLI-------QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTSC-CCCSTTCSCTTCTTCCEEECCSSCC-------CCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccc-cccCCCccccccccccEEecCCCcc-------ceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 8876 5555554477888888888888877 33 3577788888888888888887765433 2 55555
Q ss_pred ceeEEEEcCcc
Q 005747 589 ERYKILIGGVW 599 (679)
Q Consensus 589 ~~L~l~~~~~~ 599 (679)
..|+++.|.+.
T Consensus 180 ~~L~l~~n~l~ 190 (570)
T 2z63_A 180 LSLDLSLNPMN 190 (570)
T ss_dssp CEEECTTCCCC
T ss_pred hhcccCCCCce
Confidence 45555554433
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=193.71 Aligned_cols=227 Identities=17% Similarity=0.085 Sum_probs=129.2
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCCch--hhcCCCCCcEEEcccccccc--cchhhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLDIT--VIRDLKKLEVLCLRGSDIKR--LPVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~ 514 (679)
++|++|++++|.++.+| ..|.++++|++|++++|.++.++ .++++++|++|++++|.++. +|..++++++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 45666666666666554 35666666666666666666532 36666666666666666663 466666666666666
Q ss_pred ccCCcCccccChhhhcCCccc----ceeecCCCCCCcchh----------------------------------------
Q 005747 515 LRDCRELEIIPPNVLSKLSHL----EELYMGPRSFDKWEV---------------------------------------- 550 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~~L----~~L~l~~n~~~~~~~---------------------------------------- 550 (679)
+++|.+ ..+++..++.+++| +.|++++|.+.....
T Consensus 156 l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 156 LSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp CTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred CcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 666653 33333334555555 555555554432210
Q ss_pred ----------------------------------hhcccccccccccCCCcEEEEEeecCCCCCCcc-cccccceeEEEE
Q 005747 551 ----------------------------------EVEGVKNASLHELKHLISLELQIQDVNTLPRGL-FLEKLERYKILI 595 (679)
Q Consensus 551 ----------------------------------~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~l~~L~~L~l~~ 595 (679)
.+.+..|..+..+++|+.|++++|.++.+|..+ .+ +|+.|++++
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVN 313 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEES
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeecc
Confidence 112234456677888999999988888888766 45 777777776
Q ss_pred cCcccccc-----------------------ccccccEEEEecCccccch--HHHHHHhcccceeecccccccccccccc
Q 005747 596 GGVWGWEY-----------------------ADIWCREFKIDLDSKIRLK--DGLILKLQGIEDLWLSDLEERDVNYFVN 650 (679)
Q Consensus 596 ~~~~~~~~-----------------------~~~~l~~l~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~l~~i~~ 650 (679)
|....++. ..+.++.++++.+...... +.....+++|+.|++++|.+. .++.
T Consensus 314 n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~ 390 (570)
T 2z63_A 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSS 390 (570)
T ss_dssp CBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE---EEEE
T ss_pred CcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc---cccc
Confidence 66554322 2234555555554433322 233445677777777776522 2232
Q ss_pred ccCcCCCCCccEEEEecCcCccC
Q 005747 651 ELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 651 ~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
.+ ..+++|++|++++|.++..
T Consensus 391 ~~--~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 391 NF--LGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp EE--ETCTTCCEEECTTSEEESC
T ss_pred cc--cccCCCCEEEccCCccccc
Confidence 22 3445555555555554433
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=2.8e-19 Score=200.76 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=165.4
Q ss_pred CceEEEEeecccCCCC---CccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccch--hhhcCcCCCEE
Q 005747 440 EQVRVINVSYMNLLSL---PSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPV--EVGELTLLRLL 513 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L 513 (679)
++|+.|++++|.++.+ |..+..+++|++|++++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 7899999999998865 7789999999999999999887 5678999999999999999997654 78899999999
Q ss_pred eccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcc-cccccccccCCCcEEEEEeecCCCCCCc-c-cccccce
Q 005747 514 DLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEG-VKNASLHELKHLISLELQIQDVNTLPRG-L-FLEKLER 590 (679)
Q Consensus 514 ~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~-~l~~L~~ 590 (679)
++++|.+.+..|.. +..+++|++|++++|.+ .+ ..|..++.+++|+.|++++|.++.+++. + .+++|+.
T Consensus 430 ~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 430 DISYTNTKIDFDGI-FLGLTSLNTLKMAGNSF-------KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp ECTTSCCEECCTTT-TTTCTTCCEEECTTCEE-------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ECcCCCCCccchhh-hcCCCCCCEEECCCCcC-------CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 99999966666665 89999999999999988 44 4688999999999999999999976544 4 8999999
Q ss_pred eEEEEcCccccc----cccccccEEEEecCccccchHHHHHHhc-ccceeeccccccc
Q 005747 591 YKILIGGVWGWE----YADIWCREFKIDLDSKIRLKDGLILKLQ-GIEDLWLSDLEER 643 (679)
Q Consensus 591 L~l~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~ 643 (679)
|++++|.+.... .....++.|+++.|.....+.. ...++ +|+.|++++|.+.
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcc
Confidence 999999877652 2235789999998887776666 44455 6999999999843
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.2e-18 Score=198.34 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=154.2
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--c--hhhcC--CCCCcEEEccccccccc-chhhhcCcCCC
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--I--TVIRD--LKKLEVLCLRGSDIKRL-PVEVGELTLLR 511 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~--~~~~~--l~~L~~L~L~~n~i~~l-p~~i~~l~~L~ 511 (679)
++|+.|++++|.+..+++ .|.++++|++|++++|.+.. + ..+.. .++|++|++++|.++.+ |..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 678888888888886643 47778888888887776432 1 11222 23556666666655544 34455566666
Q ss_pred EEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhh-------------------hcccccccccccCCCcEEEEE
Q 005747 512 LLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVE-------------------VEGVKNASLHELKHLISLELQ 572 (679)
Q Consensus 512 ~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~-------------------~~~~~~~~l~~l~~L~~L~l~ 572 (679)
.|++++|.+.+.+|...+.++++|++|++++|.+...... ..+..|..|.++++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 6666665544455544455555566666555554321100 013567788889999999999
Q ss_pred eecCCCCCCcc--cccccceeEEEEcCccccc------------cccccccEEEEecCccccchHHHHHHhcccceeecc
Q 005747 573 IQDVNTLPRGL--FLEKLERYKILIGGVWGWE------------YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLS 638 (679)
Q Consensus 573 ~n~l~~lp~~~--~l~~L~~L~l~~~~~~~~~------------~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~ 638 (679)
+|.++.+|... .+++|+.|++++|.+.... .....++.|.++.|.....+...+..+++|+.|+|+
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 99998887764 7889999999888876542 223567888888877776666666677889999998
Q ss_pred ccccccccccccccCcCCCCCccEEEEecCcCccCCC
Q 005747 639 DLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 639 ~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~ 675 (679)
+|+ +..++... +..+++|+.|++++|+++.+|.
T Consensus 569 ~N~---l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 569 LNN---LNTLPASV-FNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp SSC---CCCCCTTT-TTTCTTCCEEECTTSCCCBCCH
T ss_pred CCC---CCcCCHhH-hCCCCCCCEEECCCCcCCccCh
Confidence 876 44555543 4667888888988888887764
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=5.5e-19 Score=176.94 Aligned_cols=194 Identities=19% Similarity=0.311 Sum_probs=157.8
Q ss_pred eecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccCh
Q 005747 447 VSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPP 526 (679)
Q Consensus 447 l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~ 526 (679)
+..+.+..+. .+..+++|+.|++++|.++.++.++.+++|++|++++|.++.++ .+..+++|++|++++|. +..+|+
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~ 102 (272)
T 3rfs_A 26 LKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPN 102 (272)
T ss_dssp HTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCT
T ss_pred hcCccccccc-ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccCh
Confidence 3444444432 35678999999999999999889999999999999999999876 78999999999999998 556676
Q ss_pred hhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcCccccccc
Q 005747 527 NVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGGVWGWEYA 604 (679)
Q Consensus 527 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~~~~~~~~ 604 (679)
..++++++|++|++++|.+ .+..+..|+++++|++|++++|.++.+|... .+++|+.|++++|.+...+
T Consensus 103 ~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 173 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQL-------QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-- 173 (272)
T ss_dssp TTTTTCTTCCEEECTTSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred hHhcCCcCCCEEECCCCcC-------CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC--
Confidence 6689999999999999998 5556677899999999999999999888764 7899999999887655432
Q ss_pred cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCC
Q 005747 605 DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 605 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
+..+..+++|+.|++++|+ +..+++.. +..+++|++|++++|+++...
T Consensus 174 ------------------~~~~~~l~~L~~L~L~~N~---l~~~~~~~-~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 174 ------------------EGVFDKLTQLKDLRLYQNQ---LKSVPDGV-FDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSC---CSCCCTTT-TTTCTTCCEEECCSSCBCCCT
T ss_pred ------------------HHHhcCCccCCEEECCCCc---CCccCHHH-HhCCcCCCEEEccCCCccccC
Confidence 1222346899999999987 44444443 377899999999999987543
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=1.3e-18 Score=171.97 Aligned_cols=171 Identities=22% Similarity=0.360 Sum_probs=138.1
Q ss_pred ceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccC
Q 005747 441 QVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRD 517 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~ 517 (679)
..+.++++++.++.+|..+. ++|+.|+|++|.++.+ ..+.++++|++|+|++|.++.++. .+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 56789999999999998765 6899999999999883 568999999999999999997765 578999999999999
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc-c-cccccceeEEEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG-L-FLEKLERYKILI 595 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~-~l~~L~~L~l~~ 595 (679)
|. +..+|...|..+++|++|++++|.+ .+..+..|.++++|+.|++++|.++.+|.. + .+++|+.|++++
T Consensus 93 n~-l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 93 NQ-LASLPLGVFDHLTQLDKLYLGGNQL-------KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred Cc-ccccChhHhcccCCCCEEEcCCCcC-------CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 98 5567766689999999999999998 444556688999999999999999988874 3 677777777766
Q ss_pred cCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 596 GGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 596 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
|.+...+. ..+..+++|+.|+|++|.
T Consensus 165 N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 165 NQLQSVPH--------------------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCCSCCCT--------------------TTTTTCTTCCEEECCSCC
T ss_pred CcCCccCH--------------------HHHhCCCCCCEEEeeCCc
Confidence 65543321 112234677777777776
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=1.9e-18 Score=185.89 Aligned_cols=180 Identities=17% Similarity=0.129 Sum_probs=122.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|++|++++|.++.+| ++.+++|++|++++|.+++++ ++++++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 64 ~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence 57888888888888775 778888888888888887764 778888888888888888776 7778888888888877
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+.+ ++ ++.+++|++|++++|.. .+.+ .+..+++|+.|++++|.++.+| ...+++|+.|+++.|.+.
T Consensus 139 l~~-l~---l~~l~~L~~L~l~~n~~-------~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 139 LTE-ID---VSHNTQLTELDCHLNKK-------ITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CSC-CC---CTTCTTCCEEECTTCSC-------CCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCS
T ss_pred cce-ec---cccCCcCCEEECCCCCc-------cccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCC
Confidence 443 43 56777778888777744 1222 3566677777777777777666 126666777777666655
Q ss_pred ccc-cccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 600 GWE-YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 600 ~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
... .....++.|.++.|.....+ ...+++|+.|++++|+
T Consensus 205 ~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 205 KLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC
T ss_pred eeccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc
Confidence 542 12235566666655544433 2345666666666665
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=3.8e-18 Score=189.19 Aligned_cols=188 Identities=20% Similarity=0.207 Sum_probs=96.4
Q ss_pred EEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccc-hhhhcCcCCCEEeccCCcCc
Q 005747 445 INVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCREL 521 (679)
Q Consensus 445 L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~l~~n~~~ 521 (679)
.+.+++.++.+|..+. ++|++|+|++|.++. +..+.++++|++|++++|.++.++ ..+..+++|++|++++|. +
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-L 86 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-C
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-c
Confidence 3445555555555433 455566666555554 234555556666666665555443 345555556666665555 3
Q ss_pred cccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeec-CCCCCC-cc-cccccceeEEEEcCc
Q 005747 522 EIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTLPR-GL-FLEKLERYKILIGGV 598 (679)
Q Consensus 522 ~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~lp~-~~-~l~~L~~L~l~~~~~ 598 (679)
..+|+..|+++++|++|++++|.+... ..|..++++++|++|++++|. +..+|. .+ .+++|+.|++++|.+
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTL------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSS------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CccCHHHhccCCCCcEEECCCCccccc------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 334443355555666666655555211 223455555556666665555 344442 22 555555555555554
Q ss_pred cccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 599 WGWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 599 ~~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
.... .....++.+.++.+.....+......+++|+.|++++|+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 4321 112234455555544444444444445666666666665
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.9e-18 Score=191.56 Aligned_cols=175 Identities=18% Similarity=0.144 Sum_probs=128.8
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
.+++.|++++|.++.+|..+. ++|++|+|++|.++.++. .+++|++|+|++|.|+.+|. .+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 358999999999999998776 899999999999998655 68999999999999999997 78999999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc----c-----------
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL----F----------- 584 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~----~----------- 584 (679)
+..+|. .+++|+.|++++|.+..+ |.. +++|++|++++|.++.+|... .
T Consensus 113 -l~~l~~----~l~~L~~L~L~~N~l~~l--------p~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 113 -LTHLPA----LPSGLCKLWIFGNQLTSL--------PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp -CCCCCC----CCTTCCEEECCSSCCSCC--------CCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred -CCCCCC----CCCCcCEEECCCCCCCcC--------CCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCC
Confidence 566775 578999999999998543 322 367777777777777665432 1
Q ss_pred ---ccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 585 ---LEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 585 ---l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
+++|+.|++++|.+..++.....++.|.++.|.....+. .+++|+.|+|++|+
T Consensus 177 ~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNR 232 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSC
T ss_pred cccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC----CCCCCCEEEccCCc
Confidence 266677777777666655444555555555444333221 13455566665554
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=182.56 Aligned_cols=199 Identities=15% Similarity=0.086 Sum_probs=154.7
Q ss_pred CceEEEEeecccCCC-CCccc--cCCCCCCEEEcCCCCCCCc------hhhcCCCCCcEEEcccccccccc-hhhhcCcC
Q 005747 440 EQVRVINVSYMNLLS-LPSSL--GLLSNLQTLSLYNCKLLDI------TVIRDLKKLEVLCLRGSDIKRLP-VEVGELTL 509 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~-lp~~~--~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~ 509 (679)
++|+.|++++|.+.. .|..+ ..+++|++|+|++|.++.. ..+..+++|++|+|++|.++.+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 469999999999984 56666 8899999999999999871 33467999999999999999775 57889999
Q ss_pred CCEEeccCCcCccc--cC-hhhhcCCcccceeecCCCCCCcchhhhcccccc-cccccCCCcEEEEEeecCCCC-CCcc-
Q 005747 510 LRLLDLRDCRELEI--IP-PNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNA-SLHELKHLISLELQIQDVNTL-PRGL- 583 (679)
Q Consensus 510 L~~L~l~~n~~~~~--lp-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~l-p~~~- 583 (679)
|++|+|++|.+.+. ++ ...+..+++|++|++++|.+...+. .+. .++++++|++|++++|.++.+ |..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 99999999986542 22 2224689999999999999854321 122 357889999999999999976 6555
Q ss_pred cc---cccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCc
Q 005747 584 FL---EKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQL 660 (679)
Q Consensus 584 ~l---~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L 660 (679)
.+ ++|+.|++++|.+..++.. + +++|+.|+|++|++.. +|. + ..+++|
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp~~--------------------~---~~~L~~L~Ls~N~l~~---~~~-~--~~l~~L 296 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVPKG--------------------L---PAKLRVLDLSSNRLNR---APQ-P--DELPEV 296 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCCSC--------------------C---CSCCSCEECCSCCCCS---CCC-T--TSCCCC
T ss_pred hccCcCcCCEEECCCCCCCchhhh--------------------h---cCCCCEEECCCCcCCC---Cch-h--hhCCCc
Confidence 33 6999999988876643311 1 2789999999998444 332 3 678999
Q ss_pred cEEEEecCcCcc
Q 005747 661 KHLYIRGSHLTL 672 (679)
Q Consensus 661 ~~L~l~~n~l~~ 672 (679)
+.|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999964
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=3.6e-20 Score=189.54 Aligned_cols=203 Identities=18% Similarity=0.137 Sum_probs=155.5
Q ss_pred ceEEEEeecccCC--CCCcccc-------CCCCCCEEEcCCCCCCC--chhh--cCCCCCcEEEcccccccccchhhhcC
Q 005747 441 QVRVINVSYMNLL--SLPSSLG-------LLSNLQTLSLYNCKLLD--ITVI--RDLKKLEVLCLRGSDIKRLPVEVGEL 507 (679)
Q Consensus 441 ~L~~L~l~~n~l~--~lp~~~~-------~l~~L~~L~L~~n~l~~--~~~~--~~l~~L~~L~L~~n~i~~lp~~i~~l 507 (679)
.++.|++++|.+. .+|..+. ++++|++|+|++|.+++ +..+ +.+++|++|+|++|.++.+|..+..+
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 3677888888885 3666555 78999999999999986 4544 89999999999999999888888877
Q ss_pred -----cCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccc--cccCCCcEEEEEeecCCCCC
Q 005747 508 -----TLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASL--HELKHLISLELQIQDVNTLP 580 (679)
Q Consensus 508 -----~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~lp 580 (679)
++|++|++++|.+ +.+++..|+++++|++|++++|.+.... ..+..+ .++++|++|++++|.++.++
T Consensus 144 ~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGER-----GLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp HTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHH-----HHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcch-----HHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 8999999999985 4555444899999999999999873210 122333 78899999999999998554
Q ss_pred C---cc--cccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcC
Q 005747 581 R---GL--FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKV 655 (679)
Q Consensus 581 ~---~~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~ 655 (679)
. .+ .+++|+.|++++|.+........ ...+++|+.|+|++|+ +..+|..+
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------~~~l~~L~~L~Ls~N~---l~~ip~~~--- 272 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPS-------------------CDWPSQLNSLNLSFTG---LKQVPKGL--- 272 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-------------------CCCCTTCCEEECTTSC---CSSCCSSC---
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhh-------------------hhhcCCCCEEECCCCc---cChhhhhc---
Confidence 3 22 56899999998877655331110 1124799999999997 44666655
Q ss_pred CCCCccEEEEecCcCccCCC
Q 005747 656 GPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 656 ~~~~L~~L~l~~n~l~~lp~ 675 (679)
+++|++|++++|+|+.+|.
T Consensus 273 -~~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 273 -PAKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp -CSEEEEEECCSSCCCSCCC
T ss_pred -cCCceEEECCCCCCCCChh
Confidence 2899999999999999876
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.4e-18 Score=170.44 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccc-ccccch-hhhcCcCCCEEeccC-CcCccccChhhhcCCccccee
Q 005747 464 NLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSD-IKRLPV-EVGELTLLRLLDLRD-CRELEIIPPNVLSKLSHLEEL 538 (679)
Q Consensus 464 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~-i~~lp~-~i~~l~~L~~L~l~~-n~~~~~lp~~~~~~l~~L~~L 538 (679)
+|++|++++|.++.+ ..+.++++|++|++++|. ++.+|. .+..+++|++|++++ |. +..+|+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 455555555555542 234555555555555554 554443 344555555555554 33 344444334555555555
Q ss_pred ecCCCCCCcchhhhcccccccccccCCCc---EEEEEee-cCCCCCCcc--cccccc-eeEEEEcCcccccccc---ccc
Q 005747 539 YMGPRSFDKWEVEVEGVKNASLHELKHLI---SLELQIQ-DVNTLPRGL--FLEKLE-RYKILIGGVWGWEYAD---IWC 608 (679)
Q Consensus 539 ~l~~n~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~lp~~~--~l~~L~-~L~l~~~~~~~~~~~~---~~l 608 (679)
++++|.+. + +|. +..+++|+ .|++++| .++.+|... .+++|+ .|++++|.+..++... ..+
T Consensus 111 ~l~~n~l~-------~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 111 GIFNTGLK-------M-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL 181 (239)
T ss_dssp EEEEECCC-------S-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE
T ss_pred eCCCCCCc-------c-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC
Confidence 55555542 1 222 44444444 5555555 555444432 444555 5555444433222110 122
Q ss_pred cEEEEecCc-cccchHHHHHHh-cccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 609 REFKIDLDS-KIRLKDGLILKL-QGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 609 ~~l~l~~~~-~~~~~~~~~~~l-~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
+.+.++.|. ....++..+..+ ++|+.|++++|+ +..+|. ..|++|+.|++++|.
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~---l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS---VTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC---CCCCCC----TTCTTCSEEECTTC-
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc---cccCCh----hHhccCceeeccCcc
Confidence 222222221 222222333344 667777777665 333332 246667777766653
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.4e-18 Score=175.41 Aligned_cols=170 Identities=22% Similarity=0.268 Sum_probs=145.6
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
++++.|++++|.++.+ |..|..+++|++|+|++|.++.++..+.+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 6899999999999976 457999999999999999999876668999999999999999999999999999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIG 596 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~ 596 (679)
. ++.+|+..|..+++|++|++++|.+ ....+..|..+++|+.|++++|+++.+|... .+++|+.|++++|
T Consensus 111 ~-l~~l~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 111 R-LTSLPLGALRGLGELQELYLKGNEL-------KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp C-CCCCCSSTTTTCTTCCEEECTTSCC-------CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred c-CcccCHHHHcCCCCCCEEECCCCCC-------CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 8 5667766699999999999999999 4455667889999999999999999999876 6899999999999
Q ss_pred Cccccccccc---cccEEEEecCc
Q 005747 597 GVWGWEYADI---WCREFKIDLDS 617 (679)
Q Consensus 597 ~~~~~~~~~~---~l~~l~l~~~~ 617 (679)
.+..++.... .++.+.+..|.
T Consensus 183 ~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 183 SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCCccChhhcccccCCeEEeCCCC
Confidence 8776644322 45566665543
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=193.50 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=65.1
Q ss_pred cCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC---cc-cccccceeEEEEcCccc-ccc-
Q 005747 530 SKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR---GL-FLEKLERYKILIGGVWG-WEY- 603 (679)
Q Consensus 530 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~---~~-~l~~L~~L~l~~~~~~~-~~~- 603 (679)
..+++|++|++++|.+ .+..|..++++++|+.|++++|+++.++. .+ .+++|+.|++++|.+.. .+.
T Consensus 350 ~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVF-------TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCC-------CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCcc-------ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 4455666666666665 34445555566666666666666554432 22 45556666665555443 221
Q ss_pred ---ccccccEEEEecCccccchHHHHHHh-cccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCCC
Q 005747 604 ---ADIWCREFKIDLDSKIRLKDGLILKL-QGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPAE 676 (679)
Q Consensus 604 ---~~~~l~~l~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~ 676 (679)
....++.+.++.|...... ...+ ++|+.|+|++|+ +..+|..+ ..+++|++|++++|+++.+|..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~---~~~l~~~L~~L~L~~N~---l~~ip~~~--~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNR---IMSIPKDV--THLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGG---GSSCCTTCSEEECCSSC---CCCCCTTT--TSSCCCSEEECCSSCCCCCCTT
T ss_pred hhcCcccCCEEECCCCCCCcch---hhhhcCcCCEEECCCCc---CcccChhh--cCCCCCCEEECCCCCCCCCCHH
Confidence 1234455555444332111 1112 355555555554 33444444 2455555555555555555543
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2.9e-18 Score=184.28 Aligned_cols=178 Identities=20% Similarity=0.163 Sum_probs=104.9
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|++|++++|.++.+| .|+++++|++|++++|.++.++.. ..+|++|++++|.++.+| .++.+++|++|++++|.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 35666666666666555 356666666666666665553221 235666666666666655 45666666666666655
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..+|.. .++|++|++++|.+ . .+| .++.+++|+.|++++|+++.+|.. +++|+.|++++|.+.
T Consensus 207 -l~~l~~~----~~~L~~L~l~~n~l-------~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 207 -LKKLPDL----PLSLESIVAGNNIL-------E-ELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLT 270 (454)
T ss_dssp -CSSCCCC----CTTCCEEECCSSCC-------S-SCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCS
T ss_pred -CCcCCCC----cCcccEEECcCCcC-------C-ccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCccc
Confidence 3334432 24566666666655 2 344 377888888888888888877763 467777777777766
Q ss_pred ccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 600 GWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 600 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
.++.....++.++++.|.....+. ..++|+.|++++|+
T Consensus 271 ~l~~~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 271 DLPELPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNE 308 (454)
T ss_dssp CCCCCCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSC
T ss_pred ccCcccCcCCEEECcCCccCcccC----cCCcCCEEECcCCc
Confidence 655555566666666654433211 11345555555544
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=6.8e-19 Score=172.69 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=158.0
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCC-CCCc--hhhcCCCCCcEEEccc-ccccccch-hhhcCcCCCEE
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCK-LLDI--TVIRDLKKLEVLCLRG-SDIKRLPV-EVGELTLLRLL 513 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~L~~-n~i~~lp~-~i~~l~~L~~L 513 (679)
.+++.|++++|.++.+|+ .|.++++|++|++++|. ++.+ ..|.++++|++|++++ |.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 589999999999998877 68899999999999997 8774 4689999999999999 99998875 67899999999
Q ss_pred eccCCcCccccChhhhcCCcccc---eeecCCC-CCCcchhhhcccccccccccCCCc-EEEEEeecCCCCCCcc-cccc
Q 005747 514 DLRDCRELEIIPPNVLSKLSHLE---ELYMGPR-SFDKWEVEVEGVKNASLHELKHLI-SLELQIQDVNTLPRGL-FLEK 587 (679)
Q Consensus 514 ~l~~n~~~~~lp~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~n~l~~lp~~~-~l~~ 587 (679)
++++|. +..+|. +..+++|+ +|++++| .+ ....+..|.++++|+ .|++++|+++.+|... ..++
T Consensus 111 ~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l-------~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 111 GIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYM-------TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp EEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTC-------CEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred eCCCCC-Cccccc--cccccccccccEEECCCCcch-------hhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence 999998 555886 78889998 9999999 77 444556789999999 9999999999998876 4589
Q ss_pred cceeEEEEcC-cccccc----cc-ccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 588 LERYKILIGG-VWGWEY----AD-IWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 588 L~~L~l~~~~-~~~~~~----~~-~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
|+.|++++|. +...+. .. ..++.++++.|.....+.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9999999884 655532 23 5788888888777666554 57899999998864
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.2e-19 Score=182.94 Aligned_cols=214 Identities=14% Similarity=0.133 Sum_probs=169.7
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
..++.++++.+.+...+. .+..+++|++|+|++|.++.+ ..+.++++|++|+|++|.++.+++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 356667777777764443 345677999999999999983 579999999999999999997775 9999999999999
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
+|. +..+| .+++|++|++++|.+... .+. .+++|+.|++++|.++.++... .+++|+.|+++
T Consensus 89 ~n~-l~~l~-----~~~~L~~L~l~~n~l~~~-------~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 89 NNY-VQELL-----VGPSIETLHAANNNISRV-------SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp SSE-EEEEE-----ECTTCCEEECCSSCCSEE-------EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CCc-ccccc-----CCCCcCEEECCCCccCCc-------Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 998 45544 348999999999999433 232 3688999999999999886643 78999999999
Q ss_pred EcCcccccc-----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 595 IGGVWGWEY-----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 595 ~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
+|.+..... ....++.|.++.|.....+... .+++|+.|+|++|+ +..+++.+ ..+++|++|++++|+
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~---l~~l~~~~--~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNK---LAFMGPEF--QSAAGVTWISLRNNK 225 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSC---CCEECGGG--GGGTTCSEEECTTSC
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccccccc--ccccCCEEECCCCc---CCcchhhh--cccCcccEEECcCCc
Confidence 988766432 2357889999887765553322 37899999999987 45566665 778999999999999
Q ss_pred CccCCCCC
Q 005747 670 LTLNPAES 677 (679)
Q Consensus 670 l~~lp~~~ 677 (679)
++.+|..+
T Consensus 226 l~~l~~~~ 233 (317)
T 3o53_A 226 LVLIEKAL 233 (317)
T ss_dssp CCEECTTC
T ss_pred ccchhhHh
Confidence 99998764
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=5.2e-18 Score=169.61 Aligned_cols=155 Identities=25% Similarity=0.400 Sum_probs=134.0
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
.+++.|++++|.++.+|+ .|.++++|++|+|++|.++.+ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 579999999999998876 689999999999999999884 346889999999999999998876 4588999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKI 593 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l 593 (679)
++|. +..+|+..|..+++|++|++++|.+ .+..+..|..+++|+.|++++|.++.+|... .+++|+.|++
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 117 DRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL-------QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCc-cCeeCHHHhCcCcCCCEEECCCCcC-------CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 9988 5566666689999999999999998 4445566899999999999999999888764 7899999999
Q ss_pred EEcCccccc
Q 005747 594 LIGGVWGWE 602 (679)
Q Consensus 594 ~~~~~~~~~ 602 (679)
++|.+...+
T Consensus 189 ~~N~l~~~~ 197 (270)
T 2o6q_A 189 DNNQLKRVP 197 (270)
T ss_dssp CSSCCSCCC
T ss_pred CCCcCCcCC
Confidence 888766543
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=190.31 Aligned_cols=221 Identities=11% Similarity=0.141 Sum_probs=179.5
Q ss_pred CceEEEEeecccCC-CCCccc-----cCCCCCCEEEcCCCCCCCc-hhhcCC---CCCcEEEcccccccccchhhhcCcC
Q 005747 440 EQVRVINVSYMNLL-SLPSSL-----GLLSNLQTLSLYNCKLLDI-TVIRDL---KKLEVLCLRGSDIKRLPVEVGELTL 509 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-~lp~~~-----~~l~~L~~L~L~~n~l~~~-~~~~~l---~~L~~L~L~~n~i~~lp~~i~~l~~ 509 (679)
.+|+.|++++|.+. .+|..+ ..+++|+.+++++|.+.-+ ..+..+ .+|++|++++|.+..++. ...+++
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~ 325 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISP 325 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc-hhhCCc
Confidence 47999999999998 788888 8999999999999998334 345544 679999999999876652 268899
Q ss_pred CCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC-CCCcc--ccc
Q 005747 510 LRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT-LPRGL--FLE 586 (679)
Q Consensus 510 L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~--~l~ 586 (679)
|++|++++|.+.+.+|.. ++.+++|++|++++|.+..++ .+|..++++++|++|++++|.++. +|... .++
T Consensus 326 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~-----~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELS-----KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHH-----HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred ccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccc-----cchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 999999999977767776 899999999999999984321 356778999999999999999997 88763 789
Q ss_pred ccceeEEEEcCcccccc-c-cccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEE
Q 005747 587 KLERYKILIGGVWGWEY-A-DIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLY 664 (679)
Q Consensus 587 ~L~~L~l~~~~~~~~~~-~-~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~ 664 (679)
+|+.|++++|.+..... . ...++.|+++.|.....+..+. .+++|+.|++++|+ +..+|... +..+++|++|+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~---l~~l~~~~-~~~l~~L~~L~ 474 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQ---LKSVPDGI-FDRLTSLQKIW 474 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSC---CCCCCTTT-TTTCTTCCEEE
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCCEEECCCCc---CCccCHHH-hccCCcccEEE
Confidence 99999999988754322 2 2578999998888777776666 68999999999987 44566652 37789999999
Q ss_pred EecCcCcc
Q 005747 665 IRGSHLTL 672 (679)
Q Consensus 665 l~~n~l~~ 672 (679)
+++|+++.
T Consensus 475 l~~N~~~c 482 (520)
T 2z7x_B 475 LHTNPWDC 482 (520)
T ss_dssp CCSSCBCC
T ss_pred CcCCCCcc
Confidence 99999864
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=7.2e-18 Score=181.27 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=93.9
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|++|++++|.++.+|..+ .+|++|++++|.++.++.++++++|++|++++|.++.+|... ++|++|++++|.
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc
Confidence 56777777777777666433 467777777777777556777777777777777777666432 467777777776
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..+|. ++.+++|++|++++|.+..+ |.. +++|+.|++++|.++.+|.. +++|+.|++++|.+.
T Consensus 227 -l~~lp~--~~~l~~L~~L~l~~N~l~~l--------~~~---~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 227 -LEELPE--LQNLPFLTTIYADNNLLKTL--------PDL---PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFS 290 (454)
T ss_dssp -CSSCCC--CTTCTTCCEEECCSSCCSSC--------CSC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred -CCcccc--cCCCCCCCEEECCCCcCCcc--------ccc---ccccCEEECCCCcccccCcc--cCcCCEEECcCCccC
Confidence 346663 66777777777777766322 221 25666666666666665543 355566666555544
Q ss_pred ccccccccccEEEEe
Q 005747 600 GWEYADIWCREFKID 614 (679)
Q Consensus 600 ~~~~~~~~l~~l~l~ 614 (679)
.++.....++.|.++
T Consensus 291 ~l~~~~~~L~~L~l~ 305 (454)
T 1jl5_A 291 GLSELPPNLYYLNAS 305 (454)
T ss_dssp EESCCCTTCCEEECC
T ss_pred cccCcCCcCCEEECc
Confidence 433322334444443
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=7.4e-18 Score=184.49 Aligned_cols=186 Identities=16% Similarity=0.140 Sum_probs=147.0
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
.+++.|++++|.++.+|..+. ++|++|+|++|.++.++ ..+++|++|+|++|.|+.+|. +.. +|++|+|++|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 378999999999999998764 89999999999999866 678999999999999999998 665 99999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+ +.+|. .+++|+.|++++|.+. + +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+.
T Consensus 132 l-~~lp~----~l~~L~~L~Ls~N~l~-------~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 132 L-TMLPE----LPALLEYINADNNQLT-------M-LPE---LPTSLEVLSVRNNQLTFLPE-LP-ESLEALDVSTNLLE 193 (571)
T ss_dssp C-SCCCC----CCTTCCEEECCSSCCS-------C-CCC---CCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCS
T ss_pred C-CCCCC----cCccccEEeCCCCccC-------c-CCC---cCCCcCEEECCCCCCCCcch-hh-CCCCEEECcCCCCC
Confidence 4 55886 5899999999999983 3 443 57899999999999999998 55 89999999998877
Q ss_pred ccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCcc
Q 005747 600 GWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 600 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
.++. ... .+....+.|+.|+|++|+ +..+|..+ ..+++|+.|+|++|+++.
T Consensus 194 ~lp~-~~~----------------~L~~~~~~L~~L~Ls~N~---l~~lp~~l--~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 194 SLPA-VPV----------------RNHHSEETEIFFRCRENR---ITHIPENI--LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCC-CC------------------------CCEEEECCSSC---CCCCCGGG--GGSCTTEEEECCSSSCCH
T ss_pred chhh-HHH----------------hhhcccccceEEecCCCc---ceecCHHH--hcCCCCCEEEeeCCcCCC
Confidence 6554 110 111223456888888876 44566655 447888888888888753
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=4.6e-18 Score=171.76 Aligned_cols=146 Identities=25% Similarity=0.337 Sum_probs=109.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.+..++ .+..+++|++|++++|.+++++.+.++++|++|++++|.++.+|. +..+++|++|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc
Confidence 57888888888888776 477888888888888888886558888888888888888887764 7888888888888877
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..++ . +..+++|++|++++|.+.. . ..+..+++|+.|++++|.++.++....+++|+.|++++|.+.
T Consensus 124 -i~~~~-~-l~~l~~L~~L~l~~n~l~~-------~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 124 -ISDIN-G-LVHLPQLESLYLGNNKITD-------I--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp -CCCCG-G-GGGCTTCCEEECCSSCCCC-------C--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred -CCCCh-h-hcCCCCCCEEEccCCcCCc-------c--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCC
Confidence 44443 3 6788888888888887732 2 457778888888888888877765226666666666555443
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.3e-18 Score=186.95 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=160.2
Q ss_pred CCCccccCC----CCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChh
Q 005747 454 SLPSSLGLL----SNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPN 527 (679)
Q Consensus 454 ~lp~~~~~l----~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~ 527 (679)
.+|..+..+ ++|++|+|++|.++. +..|+.+++|++|+|++|.++.+++ +..+++|++|+|++|. ++.+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-
Confidence 455555444 489999999999998 3579999999999999999997765 9999999999999998 555553
Q ss_pred hhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC-cc-cccccceeEEEEcCcccccc--
Q 005747 528 VLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR-GL-FLEKLERYKILIGGVWGWEY-- 603 (679)
Q Consensus 528 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~-~l~~L~~L~l~~~~~~~~~~-- 603 (679)
.++|++|++++|.+.. ..+. .+++|+.|++++|.++.+++ .+ .+++|+.|++++|.+.....
T Consensus 98 ----~~~L~~L~L~~N~l~~-------~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 98 ----GPSIETLHAANNNISR-------VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp ----CTTCCEEECCSSCCCC-------EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ----CCCcCEEECcCCcCCC-------CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 3899999999999943 3332 45889999999999998755 44 78999999999988766421
Q ss_pred ---ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCCCC
Q 005747 604 ---ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPAES 677 (679)
Q Consensus 604 ---~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~~~ 677 (679)
....++.|+|+.|.....+... .+++|+.|+|++|. +..+|+.+ ..+++|+.|+|++|.|+.+|..+
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~---l~~~~~~~--~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNK---LAFMGPEF--QSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSC---CCEECGGG--GGGTTCSEEECTTSCCCEECTTC
T ss_pred HhhhCCcccEEecCCCccccccccc--cCCCCCEEECCCCC---CCCCCHhH--cCCCCccEEEecCCcCcccchhh
Confidence 2457889999887766554322 37899999999987 45566665 77899999999999999998764
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.1e-17 Score=170.48 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=139.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.+..+++ +..+++|++|++++|.++.++.+..+++|++|++++|.++.+|. +..+++|++|++++|.
T Consensus 63 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc
Confidence 689999999999999887 99999999999999999998889999999999999999998875 8999999999999988
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..++. ++.+++|++|++++|.+.. . +. +..+++|+.|++++|.++.++....+++|+.|++++|.+.
T Consensus 141 -l~~~~~--l~~l~~L~~L~l~~n~l~~-------~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 141 -ITNISP--LAGLTNLQYLSIGNAQVSD-------L-TP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp -CCCCGG--GGGCTTCCEEECCSSCCCC-------C-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred -cCcCcc--ccCCCCccEEEccCCcCCC-------C-hh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC
Confidence 455554 7899999999999998832 2 22 8889999999999999998887448889999998877765
Q ss_pred ccccccccccEEEEecCccccchHHHHHHhcccceeecccccc
Q 005747 600 GWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEE 642 (679)
Q Consensus 600 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 642 (679)
.... ...+++|+.|++++|++
T Consensus 209 ~~~~----------------------l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 209 DVSP----------------------LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp BCGG----------------------GTTCTTCCEEEEEEEEE
T ss_pred cccc----------------------ccCCCCCCEEEccCCee
Confidence 4431 12356777777777763
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=157.95 Aligned_cols=149 Identities=20% Similarity=0.258 Sum_probs=131.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccc-cchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKR-LPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~l~~n 518 (679)
++|+.|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|++|++++|.++. .|..++.+++|++|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 68999999999999998 799999999999999999888899999999999999999995 6788999999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCC-CCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcC
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRS-FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGG 597 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~ 597 (679)
.+.+..|.. ++.+++|++|++++|. +. .+| .+..+++|+.|++++|.++.++....+++|+.|++++|.
T Consensus 123 ~i~~~~~~~-l~~l~~L~~L~L~~n~~i~--------~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 123 AHDDSILTK-INTLPKVNSIDLSYNGAIT--------DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp BCBGGGHHH-HTTCSSCCEEECCSCTBCC--------CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred ccCcHhHHH-HhhCCCCCEEEccCCCCcc--------ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 966666665 8999999999999998 52 334 689999999999999999998843389999999998876
Q ss_pred cc
Q 005747 598 VW 599 (679)
Q Consensus 598 ~~ 599 (679)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 53
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.2e-18 Score=181.96 Aligned_cols=228 Identities=15% Similarity=0.097 Sum_probs=163.2
Q ss_pred CceEEEEeecccCCC-----CCccccCCCCCCEEEcCCCCCCC-----chh-------hcCCCCCcEEEcccccccc---
Q 005747 440 EQVRVINVSYMNLLS-----LPSSLGLLSNLQTLSLYNCKLLD-----ITV-------IRDLKKLEVLCLRGSDIKR--- 499 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~~-----~~~-------~~~l~~L~~L~L~~n~i~~--- 499 (679)
++|+.|++++|.++. ++..+..+++|++|+|++|.+.. |.. +..+++|++|+|++|.++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 578999999998874 44457789999999999976543 222 4688999999999999886
Q ss_pred --cchhhhcCcCCCEEeccCCcCccccChh---hhcCC---------cccceeecCCCCCCcchhhhccccc---ccccc
Q 005747 500 --LPVEVGELTLLRLLDLRDCRELEIIPPN---VLSKL---------SHLEELYMGPRSFDKWEVEVEGVKN---ASLHE 562 (679)
Q Consensus 500 --lp~~i~~l~~L~~L~l~~n~~~~~lp~~---~~~~l---------~~L~~L~l~~n~~~~~~~~~~~~~~---~~l~~ 562 (679)
+|..+..+++|++|+|++|.+....+.. .+..+ ++|++|++++|.+.. ...+ ..+..
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------~~~~~l~~~l~~ 185 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------GSMKEWAKTFQS 185 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------GGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------HHHHHHHHHHHh
Confidence 7888899999999999998853322222 13333 899999999998842 2223 46778
Q ss_pred cCCCcEEEEEeecCC------CCCCcc-cccccceeEEEEcCccc-----c---ccccccccEEEEecCccccch----H
Q 005747 563 LKHLISLELQIQDVN------TLPRGL-FLEKLERYKILIGGVWG-----W---EYADIWCREFKIDLDSKIRLK----D 623 (679)
Q Consensus 563 l~~L~~L~l~~n~l~------~lp~~~-~l~~L~~L~l~~~~~~~-----~---~~~~~~l~~l~l~~~~~~~~~----~ 623 (679)
+++|++|++++|.++ -+|..+ .+++|+.|+++.|.+.. + ....+.++.|.++.|...... .
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 899999999999987 233244 78899999998888631 2 233457888888777654431 1
Q ss_pred HHHHH--hcccceeecccccccc--ccccccccCcCCCCCccEEEEecCcCccCC
Q 005747 624 GLILK--LQGIEDLWLSDLEERD--VNYFVNELDKVGPSQLKHLYIRGSHLTLNP 674 (679)
Q Consensus 624 ~~~~~--l~~L~~L~L~~~~~~~--l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp 674 (679)
..... +++|+.|+|++|.+.. +..++..+ ...+++|++|++++|+++..+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCcCCcch
Confidence 12222 6889999999998433 11254443 244799999999999998654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=4e-17 Score=161.28 Aligned_cols=153 Identities=24% Similarity=0.373 Sum_probs=134.4
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
.+++.|++++|.++.+++ .|.++++|++|+|++|.++.+ ..+..+++|++|+|++|.++.+|. .+..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 679999999999998765 689999999999999999983 458999999999999999998875 5689999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKI 593 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l 593 (679)
++|. +..+|+..|..+++|++|++++|.+ .+..+..|.++++|+.|++++|.++.+|... .+++|+.|++
T Consensus 115 ~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 115 GGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCc-CCCcChhHhccCCcccEEECcCCcC-------CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 9998 5677777789999999999999999 4555667999999999999999999888754 7899999999
Q ss_pred EEcCccc
Q 005747 594 LIGGVWG 600 (679)
Q Consensus 594 ~~~~~~~ 600 (679)
++|.+..
T Consensus 187 ~~N~~~c 193 (251)
T 3m19_A 187 FGNQFDC 193 (251)
T ss_dssp CSCCBCT
T ss_pred eCCceeC
Confidence 8877543
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.6e-17 Score=183.86 Aligned_cols=166 Identities=25% Similarity=0.321 Sum_probs=120.9
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.+..+| .+..+++|+.|+|++|.++.++.+..+++|++|+|++|.++.+| .+..+++|+.|+|++|.
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC
Confidence 67888888888888776 57788888888888888887656888888888888888888776 57788888888888877
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+..++ . +..+++|+.|+|++|.+. +. ..+..+++|+.|+|++|.++.+++...+++|+.|++++|.+.
T Consensus 121 -l~~l~-~-l~~l~~L~~L~Ls~N~l~-------~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 121 -ISDIN-G-LVHLPQLESLYLGNNKIT-------DI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp -CCCCG-G-GGGCTTCSEEECCSSCCC-------CC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred -CCCCc-c-ccCCCccCEEECCCCccC-------Cc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC
Confidence 44444 3 678888888888888773 22 457778888888888888877665326777777777666544
Q ss_pred ccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 600 GWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 600 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
.++. ...+++|+.|+|++|+
T Consensus 189 ~l~~----------------------l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 189 DLRA----------------------LAGLKNLDVLELFSQE 208 (605)
T ss_dssp BCGG----------------------GTTCTTCSEEECCSEE
T ss_pred CChH----------------------HccCCCCCEEEccCCc
Confidence 3210 1225677777777776
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=3.7e-17 Score=165.14 Aligned_cols=148 Identities=24% Similarity=0.265 Sum_probs=131.5
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.++.+++ +.++++|++|++++|.++.++.+..+++|++|++++|.++.++ .+..+++|+.|++++|.
T Consensus 68 ~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK 145 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC
T ss_pred CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc
Confidence 789999999999999887 9999999999999999999888999999999999999999885 68999999999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+ ..++ . ++.+++|++|++++|.+. +..+ +..+++|+.|++++|.++.+|....+++|+.|++++|.+.
T Consensus 146 l-~~~~-~-l~~l~~L~~L~L~~N~l~-------~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 146 I-TDIT-V-LSRLTKLDTLSLEDNQIS-------DIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C-CCCG-G-GGGCTTCSEEECCSSCCC-------CCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred C-Ccch-h-hccCCCCCEEEccCCccc-------cchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 4 4453 3 899999999999999983 3333 8899999999999999999886448999999999998876
Q ss_pred cc
Q 005747 600 GW 601 (679)
Q Consensus 600 ~~ 601 (679)
..
T Consensus 214 ~~ 215 (291)
T 1h6t_A 214 NK 215 (291)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=5.2e-17 Score=168.85 Aligned_cols=216 Identities=18% Similarity=0.181 Sum_probs=160.1
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccc-ccch-hhhcCcCCCEEe-ccC
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIK-RLPV-EVGELTLLRLLD-LRD 517 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~-~lp~-~i~~l~~L~~L~-l~~ 517 (679)
++++.++++++++|..+ .++++.|+|++|+|+.+ ..|.++++|++|+|++|.+. .+|. .+.++++|..+. +++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 46788999999999876 36899999999999984 35899999999999999985 5665 467888887654 455
Q ss_pred CcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEe-ecCCCCCCcc--cc-cccceeEE
Q 005747 518 CRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTLPRGL--FL-EKLERYKI 593 (679)
Q Consensus 518 n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~lp~~~--~l-~~L~~L~l 593 (679)
|+ +..+|++.|..+++|++|++++|.+ ....+..+....++..|++.. |.+..+|... .+ ..++.|++
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~l~~n~l-------~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYLLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEEEEEEECC-------SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred Cc-ccccCchhhhhcccccccccccccc-------ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 55 7778777799999999999999998 334455566777888899875 6788777654 33 46888999
Q ss_pred EEcCccccccccc---cccEEEEec-CccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 594 LIGGVWGWEYADI---WCREFKIDL-DSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 594 ~~~~~~~~~~~~~---~l~~l~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
++|.+..++.... .+..+.+.. +.....+...+..+++|+.|+|++|+ +..+|. ..|.+|+.|.+.+|.
T Consensus 162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~---l~~lp~----~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR---IHSLPS----YGLENLKKLRARSTY 234 (350)
T ss_dssp CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC---CCCCCS----SSCTTCCEEECTTCT
T ss_pred ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC---cCccCh----hhhccchHhhhccCC
Confidence 8888777654332 344444443 34445556666778999999999986 445553 347788888766554
Q ss_pred -CccCCC
Q 005747 670 -LTLNPA 675 (679)
Q Consensus 670 -l~~lp~ 675 (679)
++.+|+
T Consensus 235 ~l~~lP~ 241 (350)
T 4ay9_X 235 NLKKLPT 241 (350)
T ss_dssp TCCCCCC
T ss_pred CcCcCCC
Confidence 778874
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=5.4e-17 Score=156.67 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=130.2
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccCCc
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~n~ 519 (679)
+.++++++.++.+|..+. ++|+.|+|++|.++.+ ..|..+++|++|+|++|.|+.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 468899999999998765 7899999999999884 4689999999999999999977 7789999999999999988
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcC
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGG 597 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~ 597 (679)
+..+|...|..+++|++|++++|.+ .+..|..|.++++|+.|+|++|.++.++... .+++|+.|++++|.
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCccCHhHccCCCCCCEEECCCCCC-------CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6678888789999999999999999 5667788999999999999999999888764 78999999998776
Q ss_pred cc
Q 005747 598 VW 599 (679)
Q Consensus 598 ~~ 599 (679)
..
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=1.2e-16 Score=180.23 Aligned_cols=136 Identities=22% Similarity=0.283 Sum_probs=119.4
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l 515 (679)
.++++|+|++|.|+.+|+ .|.++++|++|+|++|.++.+ ..|.++++|++|+|++|+|+.+|. .+.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 589999999999999875 699999999999999999884 469999999999999999999986 5789999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG 582 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~ 582 (679)
++|+ +..+|+..|+++++|++|++++|.+.. ...|..++.+++|++|++++|+++.++..
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNLIQS------FKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC------CCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCcccc------CCCchhhccchhhhhhcccCccccccccc
Confidence 9998 566777668999999999999999842 24577889999999999999999876543
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.8e-17 Score=163.29 Aligned_cols=142 Identities=22% Similarity=0.244 Sum_probs=90.2
Q ss_pred eEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCc
Q 005747 442 VRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCREL 521 (679)
Q Consensus 442 L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~ 521 (679)
+..++++++.++.++ .+..+++|++|++++|.++.++.++.+++|++|+|++|.++.+|. +..+++|++|++++|. +
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l 97 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-L 97 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-C
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-c
Confidence 334455566666665 466677777777777777766667777777777777777777665 6777777777777766 4
Q ss_pred cccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCc
Q 005747 522 EIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGV 598 (679)
Q Consensus 522 ~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~ 598 (679)
+.+|. +.. ++|++|++++|.+... ..+..+++|+.|++++|+++.++....+++|+.|++++|.+
T Consensus 98 ~~l~~--~~~-~~L~~L~L~~N~l~~~---------~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 98 KNLNG--IPS-ACLSRLFLDNNELRDT---------DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SCCTT--CCC-SSCCEEECCSSCCSBS---------GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCC
T ss_pred CCcCc--ccc-CcccEEEccCCccCCC---------hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcC
Confidence 44554 233 6777777777766321 24666777777777777776665322555555555544443
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.6e-16 Score=152.10 Aligned_cols=145 Identities=23% Similarity=0.378 Sum_probs=121.6
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCCc
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCR 519 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n~ 519 (679)
+.++.+++.++.+|..+ .++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46778888898888665 46899999999999884 3478999999999999999988765 5789999999999988
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcC
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGG 597 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~ 597 (679)
+..+|...+..+++|++|++++|.+ .+..+..|.++++|+.|++++|.++.+|... .+++|+.|++++|.
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 -LQSLPNGVFDKLTQLKELALNTNQL-------QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -CCccCHhHhcCccCCCEEEcCCCcC-------cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 5567776688999999999999988 4455566889999999999999999888764 68888888887764
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.3e-16 Score=176.58 Aligned_cols=146 Identities=25% Similarity=0.274 Sum_probs=80.2
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|+|++|.+..+|+ +..+++|+.|+|++|.++.++.+..+++|++|+|++|.++.+| .+..+++|+.|+|++|.
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK 142 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc
Confidence 455566666665555554 5555666666666666555555555666666666666555543 35555666666666555
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
+ ..++ . ++.+++|+.|+|++|.+ .+..| +..+++|+.|+|++|.++.+|....+++|+.|++++|.+.
T Consensus 143 l-~~l~-~-l~~l~~L~~L~Ls~N~l-------~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 143 I-TDIT-V-LSRLTKLDTLSLEDNQI-------SDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp C-CCCG-G-GGSCTTCSEEECCSSCC-------CCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred c-CCch-h-hcccCCCCEEECcCCcC-------CCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 3 2232 2 55556666666666555 22222 5555566666666665555543225555555555555443
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=153.62 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=127.9
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc---hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCC
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI---TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDC 518 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n 518 (679)
+.+++++|.++.+|..+. ..+++|+|++|.++.+ ..|..+++|++|+|++|.|+.++. .+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 479999999999998664 5679999999999884 338999999999999999998876 7899999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCC-Ccc-cccccceeEEEEc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLP-RGL-FLEKLERYKILIG 596 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~-~l~~L~~L~l~~~ 596 (679)
. +..+|+..|..+++|++|++++|.+ .+..|..|.++++|+.|+|++|.++.++ ..+ .+++|+.|++++|
T Consensus 92 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 R-LENVQHKMFKGLESLKTLMLRSNRI-------TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp C-CCCCCGGGGTTCSSCCEEECTTSCC-------CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred c-cCccCHhHhcCCcCCCEEECCCCcC-------CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 8 5667776699999999999999999 6667889999999999999999999884 444 7899999999887
Q ss_pred Ccc
Q 005747 597 GVW 599 (679)
Q Consensus 597 ~~~ 599 (679)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 654
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=1.4e-17 Score=172.42 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=157.7
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC---chhhcCCCCCcEEEccccccc-ccchhhhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD---ITVIRDLKKLEVLCLRGSDIK-RLPVEVGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~l 515 (679)
.+++.|++++|.+...++.+..+++|++|++++|.++. +..+..+++|++|+|++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 57889999999998777777889999999999999875 356788999999999999988 66778889999999999
Q ss_pred cCCcCcc--ccChhhhcCCcccceeecCCC-CCCcchhhhcccccccccccC-CCcEEEEEeec--CC--CCCCcc-ccc
Q 005747 516 RDCRELE--IIPPNVLSKLSHLEELYMGPR-SFDKWEVEVEGVKNASLHELK-HLISLELQIQD--VN--TLPRGL-FLE 586 (679)
Q Consensus 516 ~~n~~~~--~lp~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~n~--l~--~lp~~~-~l~ 586 (679)
++|..++ .++.. +.++++|++|++++| .+.. ..++..+..++ +|++|++++|. ++ .+|..+ .++
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 9984344 25544 788999999999998 7732 12456678889 99999999984 43 455555 788
Q ss_pred ccceeEEEEcC-cccc----ccccccccEEEEecCccccchHH--HHHHhcccceeeccccccccccccccccCcCCC-C
Q 005747 587 KLERYKILIGG-VWGW----EYADIWCREFKIDLDSKIRLKDG--LILKLQGIEDLWLSDLEERDVNYFVNELDKVGP-S 658 (679)
Q Consensus 587 ~L~~L~l~~~~-~~~~----~~~~~~l~~l~l~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~-~ 658 (679)
+|+.|++++|. +... ......++.|.++.+.... +.. ....+++|+.|++++|- +... ...+ .
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~i-------~~~~-~~~l~~ 293 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGIV-------PDGT-LQLLKE 293 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTSS-------CTTC-HHHHHH
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCcc-------CHHH-HHHHHh
Confidence 99999998877 3321 1223567777776664221 111 23347888888888861 1111 1222 3
Q ss_pred CccEEEEecCcCccC
Q 005747 659 QLKHLYIRGSHLTLN 673 (679)
Q Consensus 659 ~L~~L~l~~n~l~~l 673 (679)
+|+.|++++|+++..
T Consensus 294 ~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 294 ALPHLQINCSHFTTI 308 (336)
T ss_dssp HSTTSEESCCCSCCT
T ss_pred hCcceEEecccCccc
Confidence 466677888888765
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=7.9e-18 Score=177.72 Aligned_cols=229 Identities=15% Similarity=0.080 Sum_probs=166.9
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--c----hhhcCCCCCcEEEccccccc----ccchhh-----
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--I----TVIRDLKKLEVLCLRGSDIK----RLPVEV----- 504 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~L~~n~i~----~lp~~i----- 504 (679)
+.++...++...+..++..+..+++|++|+|++|.++. + ..+..+++|++|+|++|.+. .+|.++
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 44555555555566788889999999999999999887 2 23778999999999997555 345554
Q ss_pred --hcCcCCCEEeccCCcCcc----ccChhhhcCCcccceeecCCCCCCcchhhhccccccccccc---------CCCcEE
Q 005747 505 --GELTLLRLLDLRDCRELE----IIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHEL---------KHLISL 569 (679)
Q Consensus 505 --~~l~~L~~L~l~~n~~~~----~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l---------~~L~~L 569 (679)
..+++|++|+|++|.+.. .+|.. +..+++|++|++++|.+..... ..++..+..+ ++|++|
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG---AKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH---HHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH---HHHHHHHHHHhhhhhcccCCCCcEE
Confidence 689999999999998655 36665 7899999999999999842211 1233345555 899999
Q ss_pred EEEeecCC--CCC---Ccc-cccccceeEEEEcCccc---------cccccccccEEEEecCccc----cchHHHHHHhc
Q 005747 570 ELQIQDVN--TLP---RGL-FLEKLERYKILIGGVWG---------WEYADIWCREFKIDLDSKI----RLKDGLILKLQ 630 (679)
Q Consensus 570 ~l~~n~l~--~lp---~~~-~l~~L~~L~l~~~~~~~---------~~~~~~~l~~l~l~~~~~~----~~~~~~~~~l~ 630 (679)
++++|+++ .+| ..+ .+++|+.|++++|.+.. .......++.|.++.|... ...+.....++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 99999997 444 233 67899999999988762 1223457888888887653 22223344578
Q ss_pred ccceeeccccccccc--cccccccCcCCCCCccEEEEecCcCcc
Q 005747 631 GIEDLWLSDLEERDV--NYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 631 ~L~~L~L~~~~~~~l--~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+|+.|+|++|.+... ..++..+....+++|++|+|++|+++.
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 999999999984432 123343322348999999999999986
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1.6e-16 Score=165.06 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=161.9
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC-c--hhhcCCCCCcE-EEcccccccccc-hhhhcCcCCCEE
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD-I--TVIRDLKKLEV-LCLRGSDIKRLP-VEVGELTLLRLL 513 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~-~--~~~~~l~~L~~-L~L~~n~i~~lp-~~i~~l~~L~~L 513 (679)
.+++.|+|++|+|+.+|+ .|.++++|++|+|++|.+.+ + ..|.++++|.. +.+++|+++.+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578999999999999986 58999999999999999866 3 45788888765 667778999885 467899999999
Q ss_pred eccCCcCccccChhhhcCCcccceeecCC-CCCCcchhhhcccccccccccC-CCcEEEEEeecCCCCCCcc-cccccce
Q 005747 514 DLRDCRELEIIPPNVLSKLSHLEELYMGP-RSFDKWEVEVEGVKNASLHELK-HLISLELQIQDVNTLPRGL-FLEKLER 590 (679)
Q Consensus 514 ~l~~n~~~~~lp~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~lp~~~-~l~~L~~ 590 (679)
++++|. +..+|...+....++..|++.+ |.+ ....+..|..+. .|+.|++++|+++.+|... ...+|+.
T Consensus 110 ~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i-------~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 110 LISNTG-IKHLPDVHKIHSLQKVLLDIQDNINI-------HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181 (350)
T ss_dssp EEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTC-------CEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred cccccc-cccCCchhhcccchhhhhhhcccccc-------ccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence 999988 5556655466777888888866 445 233344566654 6889999999999998877 6778888
Q ss_pred eEEEE-cCcccccc----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEE
Q 005747 591 YKILI-GGVWGWEY----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYI 665 (679)
Q Consensus 591 L~l~~-~~~~~~~~----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l 665 (679)
+.+.. |.+..++. ....++.|+++.|.....+.. .+.+|+.|.+.++. .++.+| .+ ..+++|+.+++
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~--~l~~lP-~l--~~l~~L~~l~l 253 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTY--NLKKLP-TL--EKLVALMEASL 253 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCT--TCCCCC-CT--TTCCSCCEEEC
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCC--CcCcCC-Cc--hhCcChhhCcC
Confidence 88874 44555443 234788888888877766654 35678888887777 777776 34 78899999998
Q ss_pred ecC
Q 005747 666 RGS 668 (679)
Q Consensus 666 ~~n 668 (679)
+++
T Consensus 254 ~~~ 256 (350)
T 4ay9_X 254 TYP 256 (350)
T ss_dssp SCH
T ss_pred CCC
Confidence 764
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=2.9e-16 Score=152.59 Aligned_cols=147 Identities=26% Similarity=0.376 Sum_probs=127.9
Q ss_pred eEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCC
Q 005747 442 VRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC 518 (679)
Q Consensus 442 L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n 518 (679)
.+.++.+++.+..+|..+. ++|++|+|++|.++. +..+..+++|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4578999999999998664 899999999999998 35689999999999999999999864 589999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIG 596 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~ 596 (679)
. +..+|...|..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|... .+++|+.|++.+|
T Consensus 99 ~-l~~l~~~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 Q-LTVLPSAVFDRLVHLKELFMCCNKLT--------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCC--------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred c-CCccChhHhCcchhhCeEeccCCccc--------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 8 56677776899999999999999983 56778899999999999999999988754 7889999998777
Q ss_pred Ccc
Q 005747 597 GVW 599 (679)
Q Consensus 597 ~~~ 599 (679)
...
T Consensus 170 ~~~ 172 (229)
T 3e6j_A 170 PWD 172 (229)
T ss_dssp CBC
T ss_pred Ccc
Confidence 643
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=4.6e-17 Score=170.13 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=162.2
Q ss_pred CceEEEEeecccCCCCC-----ccccCCC-CCCEEEcCCCCCCC--chhhcCC-----CCCcEEEcccccccccch-h--
Q 005747 440 EQVRVINVSYMNLLSLP-----SSLGLLS-NLQTLSLYNCKLLD--ITVIRDL-----KKLEVLCLRGSDIKRLPV-E-- 503 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-----~~~~~l~-~L~~L~L~~n~l~~--~~~~~~l-----~~L~~L~L~~n~i~~lp~-~-- 503 (679)
++|+.|++++|.++..+ ..+..++ +|++|+|++|.++. +..+..+ ++|++|+|++|.++..+. .
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46999999999999776 5678888 89999999999887 4455554 999999999999985543 3
Q ss_pred --hhcC-cCCCEEeccCCcCccccChhhh----cC-CcccceeecCCCCCCcchhhhcccccccccccC-CCcEEEEEee
Q 005747 504 --VGEL-TLLRLLDLRDCRELEIIPPNVL----SK-LSHLEELYMGPRSFDKWEVEVEGVKNASLHELK-HLISLELQIQ 574 (679)
Q Consensus 504 --i~~l-~~L~~L~l~~n~~~~~lp~~~~----~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~n 574 (679)
+..+ ++|++|++++|. ++..+...+ .. .++|++|++++|.+..... ..++..+..++ +|++|++++|
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS---DELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH---HHHHHHHhcCCccccEeeecCC
Confidence 4445 899999999998 455554333 33 3699999999998843211 13344455555 9999999999
Q ss_pred cCCCCCCc-----c-cc-cccceeEEEEcCcccc-----cc----ccccccEEEEecCccccchHH----HHHHhcccce
Q 005747 575 DVNTLPRG-----L-FL-EKLERYKILIGGVWGW-----EY----ADIWCREFKIDLDSKIRLKDG----LILKLQGIED 634 (679)
Q Consensus 575 ~l~~lp~~-----~-~l-~~L~~L~l~~~~~~~~-----~~----~~~~l~~l~l~~~~~~~~~~~----~~~~l~~L~~ 634 (679)
+++..+.. + .. ++|+.|++++|.+... .. ....++.|+++.|........ ....+++|+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 99865532 1 33 5899999999887762 11 124788888888766554332 2233688999
Q ss_pred eeccccccccc-----cccccccCcCCCCCccEEEEecCcCccC
Q 005747 635 LWLSDLEERDV-----NYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 635 L~L~~~~~~~l-----~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
|+|++|.+..+ ..++..+ ..+++|+.|++++|++...
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCBCCGG
T ss_pred EEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCcCCCc
Confidence 99999873332 2222233 5678899999999998643
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=1.5e-16 Score=150.80 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=127.0
Q ss_pred ccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCccccee
Q 005747 459 LGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEEL 538 (679)
Q Consensus 459 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L 538 (679)
...+++|+.|++++|.++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..|.. ++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 3678899999999999999778999999999999999888776 6899999999999999976666766 8999999999
Q ss_pred ecCCCCCCcchhhhcccccccccccCCCcEEEEEeec-CCCCCCcccccccceeEEEEcCccccccccccccEEEEecCc
Q 005747 539 YMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTLPRGLFLEKLERYKILIGGVWGWEYADIWCREFKIDLDS 617 (679)
Q Consensus 539 ~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~ 617 (679)
++++|.+ .+..|..++.+++|++|++++|. ++.+|....+++|+.|++++|.+..+.
T Consensus 118 ~Ls~n~i-------~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--------------- 175 (197)
T 4ezg_A 118 DISHSAH-------DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--------------- 175 (197)
T ss_dssp ECCSSBC-------BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---------------
T ss_pred EecCCcc-------CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH---------------
Confidence 9999998 55567788999999999999998 888884338899999999777654422
Q ss_pred cccchHHHHHHhcccceeeccccc
Q 005747 618 KIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 618 ~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
....+++|+.|++++|+
T Consensus 176 -------~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 -------GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -------TGGGCSSCCEEEECBC-
T ss_pred -------HhccCCCCCEEEeeCcc
Confidence 11235788888888876
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.5e-17 Score=172.18 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=63.8
Q ss_pred eEEEEeecccCCCCCccccCC--CCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccc--cchhhhcCcCCCEEecc
Q 005747 442 VRVINVSYMNLLSLPSSLGLL--SNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKR--LPVEVGELTLLRLLDLR 516 (679)
Q Consensus 442 L~~L~l~~n~l~~lp~~~~~l--~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~l~ 516 (679)
++.++++++.+. |..+..+ ++++.|++++|.+.+ ++.+..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 344444444443 2233333 445555555554444 2334444555555555554441 44444445555555555
Q ss_pred CCcCccccChhhhcCCcccceeecCCC-CCCcchhhhcc-cccccccccCCCcEEEEEee-cCCC--CCCcc-ccc-ccc
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPR-SFDKWEVEVEG-VKNASLHELKHLISLELQIQ-DVNT--LPRGL-FLE-KLE 589 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~--lp~~~-~l~-~L~ 589 (679)
+|.+....|.. ++.+++|++|++++| .+ .+ .++..+.++++|++|++++| .++. ++..+ .++ +|+
T Consensus 127 ~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l-------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 127 GLRLSDPIVNT-LAKNSNLVRLNLSGCSGF-------SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp TCBCCHHHHHH-HTTCTTCSEEECTTCBSC-------CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CcccCHHHHHH-HhcCCCCCEEECCCCCCC-------CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 54433333333 444555555555554 23 11 12333444455555555544 4442 23322 444 455
Q ss_pred eeEEEEc
Q 005747 590 RYKILIG 596 (679)
Q Consensus 590 ~L~l~~~ 596 (679)
.|++++|
T Consensus 199 ~L~l~~~ 205 (336)
T 2ast_B 199 QLNLSGY 205 (336)
T ss_dssp EEECCSC
T ss_pred EEEeCCC
Confidence 5555444
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=163.52 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=138.2
Q ss_pred CceEEEEeecccCCCC-C----ccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccc---cchh--hhcC
Q 005747 440 EQVRVINVSYMNLLSL-P----SSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKR---LPVE--VGEL 507 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p----~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~---lp~~--i~~l 507 (679)
++|+.|++++|.++.. | ..+..+++|++|+|++|.++. +..++.+++|++|+|++|++.. ++.. +..+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 6899999999999853 2 235679999999999999988 3578899999999999999763 4433 3689
Q ss_pred cCCCEEeccCCcCccccCh---hhhcCCcccceeecCCCCCCcchhhhccccccccccc---CCCcEEEEEeecCCCCCC
Q 005747 508 TLLRLLDLRDCRELEIIPP---NVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHEL---KHLISLELQIQDVNTLPR 581 (679)
Q Consensus 508 ~~L~~L~l~~n~~~~~lp~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~n~l~~lp~ 581 (679)
++|++|++++|.+ +.+|. ..++.+++|++|++++|.+ .+..|..+..+ ++|++|++++|+++.+|.
T Consensus 197 ~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l-------~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 197 PAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSL-------RATVNPSAPRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp CCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCC-------CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred CCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCC-------CccchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence 9999999999984 44443 2467889999999999999 55567667666 699999999999999998
Q ss_pred cccccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 582 GLFLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 582 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
.+. ++|+.|++++|.+..++.. ..+++|+.|+|++|+
T Consensus 269 ~~~-~~L~~L~Ls~N~l~~~~~~----------------------~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 GLP-AKLRVLDLSSNRLNRAPQP----------------------DELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC-SCCSCEECCSCCCCSCCCT----------------------TSCCCCSCEECSSTT
T ss_pred hhc-CCCCEEECCCCcCCCCchh----------------------hhCCCccEEECcCCC
Confidence 764 8999999988887654321 135899999999987
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3e-16 Score=144.65 Aligned_cols=135 Identities=23% Similarity=0.239 Sum_probs=116.6
Q ss_pred CceEEEEeecccCC--CCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccc-cchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLL--SLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKR-LPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~l~ 516 (679)
++|+.|++++|.++ .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 68999999999998 8998889999999999999999888889999999999999999997 77777789999999999
Q ss_pred CCcCccccCh-hhhcCCcccceeecCCCCCCcchhhhccccc---ccccccCCCcEEEEEeecCCCCCCc
Q 005747 517 DCRELEIIPP-NVLSKLSHLEELYMGPRSFDKWEVEVEGVKN---ASLHELKHLISLELQIQDVNTLPRG 582 (679)
Q Consensus 517 ~n~~~~~lp~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~n~l~~lp~~ 582 (679)
+|. +..+|. ..+..+++|++|++++|.+. +..+ ..+..+++|+.|++++|.+..+|..
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVT-------NLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-------TSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-------chHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 998 555542 34889999999999999883 3323 4788899999999999999888764
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=7.7e-16 Score=160.64 Aligned_cols=149 Identities=22% Similarity=0.250 Sum_probs=124.0
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhc-CCCCCcEEEcccccccccch-hhhcCcCCCEEeccCC
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIR-DLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDC 518 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~-~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n 518 (679)
+.++++++.++.+|..+. ..++.|+|++|.++.+ ..+. ++++|++|+|++|.|+.+|. .+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 478899999999987654 5689999999999883 3465 89999999999999998864 6889999999999998
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc-----cccccceeEE
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL-----FLEKLERYKI 593 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-----~l~~L~~L~l 593 (679)
. +..+|...|..+++|++|+|++|.+ ....|..|.++++|+.|+|++|.++.+|... .+++|+.|++
T Consensus 99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 99 H-LHTLDEFLFSDLQALEVLLLYNNHI-------VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred c-CCcCCHHHhCCCcCCCEEECCCCcc-------cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 8 6667776689999999999999998 5556788999999999999999999988764 3778888888
Q ss_pred EEcCcccc
Q 005747 594 LIGGVWGW 601 (679)
Q Consensus 594 ~~~~~~~~ 601 (679)
++|.+..+
T Consensus 171 ~~N~l~~l 178 (361)
T 2xot_A 171 SSNKLKKL 178 (361)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCcc
Confidence 77766554
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=1.7e-15 Score=170.81 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=128.0
Q ss_pred EEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcC
Q 005747 444 VINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRE 520 (679)
Q Consensus 444 ~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~ 520 (679)
..+.++.+++++|..+. +++++|+|++|.|+.+ ..|.++++|++|+|++|.|+.+|+ .+.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~- 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-
Confidence 45666778899997663 5899999999999984 569999999999999999999976 58999999999999998
Q ss_pred ccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC--CCcc-cccccceeEEEEcC
Q 005747 521 LEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL--PRGL-FLEKLERYKILIGG 597 (679)
Q Consensus 521 ~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l--p~~~-~l~~L~~L~l~~~~ 597 (679)
+..+|++.|.++++|++|++++|.+ .+..+..|+++++|++|++++|.++.+ |..+ .+++|+.|++++|.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l-------~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCC-------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcC-------CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 7788888899999999999999998 555567799999999999999999854 5555 78999999999887
Q ss_pred cccc
Q 005747 598 VWGW 601 (679)
Q Consensus 598 ~~~~ 601 (679)
+...
T Consensus 185 l~~~ 188 (635)
T 4g8a_A 185 IQSI 188 (635)
T ss_dssp CCEE
T ss_pred cccc
Confidence 6654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.5e-15 Score=150.84 Aligned_cols=148 Identities=23% Similarity=0.230 Sum_probs=129.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.++.+| .+..+++|++|+|++|.+++++.+..+++|++|+|++|.++.+|.. .. ++|++|++++|.
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI-PS-ACLSRLFLDNNE 117 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC-CC-SSCCEEECCSSC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc-cc-CcccEEEccCCc
Confidence 68999999999999998 7899999999999999999966699999999999999999998863 33 999999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEEcCcc
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILIGGVW 599 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~~~~~ 599 (679)
++.++ . ++.+++|++|++++|.+.. . + .+..+++|+.|++++|.++.++....+++|+.|++++|.+.
T Consensus 118 -l~~~~-~-l~~l~~L~~L~Ls~N~i~~-------~-~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 118 -LRDTD-S-LIHLKNLEILSIRNNKLKS-------I-V-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -CSBSG-G-GTTCTTCCEEECTTSCCCB-------C-G-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred -cCCCh-h-hcCcccccEEECCCCcCCC-------C-h-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence 55565 3 8999999999999999843 2 3 68899999999999999998844338999999999999876
Q ss_pred ccc
Q 005747 600 GWE 602 (679)
Q Consensus 600 ~~~ 602 (679)
..+
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 553
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=9.3e-17 Score=167.80 Aligned_cols=221 Identities=11% Similarity=0.021 Sum_probs=157.0
Q ss_pred EEEeecccCCCC-CccccCCCCCCEEEcCCCCCCCc------hhhcCCC-CCcEEEccccccccc-chhhhcC-----cC
Q 005747 444 VINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLDI------TVIRDLK-KLEVLCLRGSDIKRL-PVEVGEL-----TL 509 (679)
Q Consensus 444 ~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~-~L~~L~L~~n~i~~l-p~~i~~l-----~~ 509 (679)
.+++++|.++.. |..+...++|++|+|++|.++.. ..+..++ +|++|+|++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 357888988854 44455556699999999999873 5678888 999999999999965 5566654 99
Q ss_pred CCEEeccCCcCccccChh---hhcCC-cccceeecCCCCCCcchhhhccccccc----ccc-cCCCcEEEEEeecCCCC-
Q 005747 510 LRLLDLRDCRELEIIPPN---VLSKL-SHLEELYMGPRSFDKWEVEVEGVKNAS----LHE-LKHLISLELQIQDVNTL- 579 (679)
Q Consensus 510 L~~L~l~~n~~~~~lp~~---~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~----l~~-l~~L~~L~l~~n~l~~l- 579 (679)
|++|+|++|.+....+.. .+..+ ++|++|++++|.+. +..+.. +.. .++|++|++++|.++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-------SKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-------GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-------cHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 999999999854433332 13444 89999999999984 333333 333 36999999999999842
Q ss_pred ----CCcc-ccc-ccceeEEEEcCcccccc--------cc-ccccEEEEecCcccc-----chHHHHHHhcccceeeccc
Q 005747 580 ----PRGL-FLE-KLERYKILIGGVWGWEY--------AD-IWCREFKIDLDSKIR-----LKDGLILKLQGIEDLWLSD 639 (679)
Q Consensus 580 ----p~~~-~l~-~L~~L~l~~~~~~~~~~--------~~-~~l~~l~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~ 639 (679)
+..+ .++ +|+.|++++|.+..... .. ..++.|+++.|.... .+..+....++|+.|+|++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 2222 344 99999999988765432 11 478889998877655 2333333346899999999
Q ss_pred ccccccc--ccccccCcCCCCCccEEEEecCcCccC
Q 005747 640 LEERDVN--YFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 640 ~~~~~l~--~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
|.+.... .+... ...+++|++|++++|.+..+
T Consensus 235 N~l~~~~~~~l~~~--~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 235 NCLHGPSLENLKLL--KDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp SCCCCCCHHHHHHT--TTTTTTCSEEEEEHHHHTTC
T ss_pred CCCCcHHHHHHHHH--HhcCCCccEEEeccCCcccc
Confidence 9844331 12111 36679999999999985443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=1e-15 Score=147.64 Aligned_cols=131 Identities=18% Similarity=0.305 Sum_probs=116.2
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l 515 (679)
++++.|++++|.++.+|+ .|..+++|++|+|++|.++. +..|.++++|++|+|++|.|+.+|.. +..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 589999999999998876 68999999999999999988 46799999999999999999999876 578999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
++|.+ ..+++..|..+++|++|++++|.+ .+..+..|..+++|+.|++++|.+..
T Consensus 112 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKI-NCLRVDAFQDLHNLNLLSLYDNKL-------QTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCC-CEeCHHHcCCCCCCCEEECCCCcC-------CEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99984 555555599999999999999999 55556778999999999999998863
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=145.23 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=115.2
Q ss_pred CceEEEEeecccCCCCCc--cccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLPS--SLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~ 514 (679)
..++.|++++|.++.+++ .|..+++|++|+|++|.++.+ ..|.++++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 568899999999998743 488999999999999999984 469999999999999999998876 488999999999
Q ss_pred ccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 515 LRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
|++|.+.+..|. .|..+++|++|++++|.+ .+..|..|..+++|+.|++++|.+..
T Consensus 112 Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 112 LRSNRITCVGND-SFIGLSSVRLLSLYDNQI-------TTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCBCTT-SSTTCTTCSEEECTTSCC-------CCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCeECHh-HcCCCccCCEEECCCCcC-------CEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999985554454 489999999999999999 56678899999999999999999873
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.2e-16 Score=172.98 Aligned_cols=228 Identities=19% Similarity=0.173 Sum_probs=158.5
Q ss_pred CceEEEEeecccCCC-----CCccccCCCCCCEEEcCCCCCCC--chhhc-----CCCCCcEEEcccccccc-----cch
Q 005747 440 EQVRVINVSYMNLLS-----LPSSLGLLSNLQTLSLYNCKLLD--ITVIR-----DLKKLEVLCLRGSDIKR-----LPV 502 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~~--~~~~~-----~l~~L~~L~L~~n~i~~-----lp~ 502 (679)
.+|+.|++++|.++. ++..+..+++|++|++++|.+++ +..+. .+++|++|++++|.++. +|.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 479999999998874 45567788999999999999876 23332 36689999999998885 677
Q ss_pred hhhcCcCCCEEeccCCcCccc----cChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 503 EVGELTLLRLLDLRDCRELEI----IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 503 ~i~~l~~L~~L~l~~n~~~~~----lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
.+..+++|++|++++|.+... +++..+..+++|++|++++|.+..... ..++..+.++++|++|++++|.++.
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC---GDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH---HHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH---HHHHHHHhhCCCcceEECCCCCCch
Confidence 788899999999999874332 223334468899999999998843211 1256667788999999999998863
Q ss_pred CCC-----cc--cccccceeEEEEcCccccc--------cccccccEEEEecCccccch-HHHHHH----hcccceeecc
Q 005747 579 LPR-----GL--FLEKLERYKILIGGVWGWE--------YADIWCREFKIDLDSKIRLK-DGLILK----LQGIEDLWLS 638 (679)
Q Consensus 579 lp~-----~~--~l~~L~~L~l~~~~~~~~~--------~~~~~l~~l~l~~~~~~~~~-~~~~~~----l~~L~~L~L~ 638 (679)
.+. .+ ..++|+.|++++|.+.... .....++.|+++.|...... ..+... .++|+.|+++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 221 11 2258999999888765431 12257788888776543332 222222 4589999999
Q ss_pred cccccc--ccccccccCcCCCCCccEEEEecCcCcc
Q 005747 639 DLEERD--VNYFVNELDKVGPSQLKHLYIRGSHLTL 672 (679)
Q Consensus 639 ~~~~~~--l~~i~~~l~~~~~~~L~~L~l~~n~l~~ 672 (679)
+|++.. ...++..+ ..+++|++|++++|+++.
T Consensus 379 ~n~i~~~~~~~l~~~l--~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATL--LANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TSCCCHHHHHHHHHHH--HHCCCCCEEECCSSSCCH
T ss_pred CCCCChhhHHHHHHHH--HhCCCccEEECCCCCCCH
Confidence 987331 11444444 557899999999998864
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.5e-16 Score=172.12 Aligned_cols=227 Identities=17% Similarity=0.133 Sum_probs=108.5
Q ss_pred ceEEEEeecccCC-----CCCccccCCCCCCEEEcCCCCCCC--chhh-----cCCCCCcEEEcccccccc-----cchh
Q 005747 441 QVRVINVSYMNLL-----SLPSSLGLLSNLQTLSLYNCKLLD--ITVI-----RDLKKLEVLCLRGSDIKR-----LPVE 503 (679)
Q Consensus 441 ~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~L~~n~l~~--~~~~-----~~l~~L~~L~L~~n~i~~-----lp~~ 503 (679)
+|++|++++|.++ .+|..+..+++|++|++++|.+++ +..+ ...++|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4666666666655 234555566666666666666543 1111 123455555555555542 2334
Q ss_pred hhcCcCCCEEeccCCcCccc---------------------------------cChhhhcCCcccceeecCCCCCCcchh
Q 005747 504 VGELTLLRLLDLRDCRELEI---------------------------------IPPNVLSKLSHLEELYMGPRSFDKWEV 550 (679)
Q Consensus 504 i~~l~~L~~L~l~~n~~~~~---------------------------------lp~~~~~~l~~L~~L~l~~n~~~~~~~ 550 (679)
+..+++|++|++++|.+... ++.. +..+++|++|++++|.+.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHHH
Confidence 44455555555555542221 2222 3344444444444444321100
Q ss_pred hhcccccccccccCCCcEEEEEeecCCC-----CCCcc-cccccceeEEEEcCccccc---------cccccccEEEEec
Q 005747 551 EVEGVKNASLHELKHLISLELQIQDVNT-----LPRGL-FLEKLERYKILIGGVWGWE---------YADIWCREFKIDL 615 (679)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----lp~~~-~l~~L~~L~l~~~~~~~~~---------~~~~~l~~l~l~~ 615 (679)
....+..+..+++|++|++++|.++. ++..+ .+++|+.|++++|.+.... .....++.|.++.
T Consensus 245 --~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 245 --AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp --HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred --HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 00001112234556666666665553 34333 4566666666655543210 1113566666665
Q ss_pred Cccccch----HHHHHHhcccceeeccccccccc--cccccccCcCCCCCccEEEEecCcCc
Q 005747 616 DSKIRLK----DGLILKLQGIEDLWLSDLEERDV--NYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 616 ~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~l--~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
+...... ......+++|+.|++++|.+... ..+...+ ....++|++|++++|.++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-GQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-TSTTCCCCEEECTTSCCC
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-cCCCCceEEEECCCCCCC
Confidence 5443321 12223357777777777763221 1111111 112567888888888876
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=4.2e-15 Score=144.35 Aligned_cols=131 Identities=21% Similarity=0.295 Sum_probs=116.5
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l 515 (679)
.+|+.|++++|.++.+ |..|.++++|++|+|++|.++.+ ..|..+++|++|+|++|.|+.+|.. +..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6899999999999987 56789999999999999999884 4478999999999999999998765 589999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL 579 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l 579 (679)
++|. +..+|.. +..+++|++|++++|.+ ....+..|..+++|+.|++++|.+..-
T Consensus 120 s~N~-l~~lp~~-~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNK-LTELPRG-IERLTHLTHLALDQNQL-------KSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSC-CCSCCTT-GGGCTTCSEEECCSSCC-------CCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCc-ccccCcc-cccCCCCCEEECCCCcC-------CccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9998 6688988 79999999999999999 444556789999999999999998743
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=2.6e-15 Score=156.69 Aligned_cols=151 Identities=20% Similarity=0.276 Sum_probs=124.7
Q ss_pred CceEEEEeecccCCCCCcc-cc-CCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLPSS-LG-LLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~ 514 (679)
..++.|+|++|.++.++.. +. ++++|++|+|++|.++.+ ..|.++++|++|+|++|.|+.+|. .+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 5689999999999988765 55 899999999999999984 469999999999999999998876 578999999999
Q ss_pred ccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccc---cccCCCcEEEEEeecCCCCCCcc--cccc--
Q 005747 515 LRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASL---HELKHLISLELQIQDVNTLPRGL--FLEK-- 587 (679)
Q Consensus 515 l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~n~l~~lp~~~--~l~~-- 587 (679)
|++|. +..+++..|..+++|++|+|++|.+..++ +..| ..+++|+.|+|++|.++.+|... .+++
T Consensus 119 L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 119 LYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFP-------VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCC-------GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeC-------HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 99998 55555555999999999999999995432 2333 67999999999999999988643 5555
Q ss_pred cceeEEEEcCc
Q 005747 588 LERYKILIGGV 598 (679)
Q Consensus 588 L~~L~l~~~~~ 598 (679)
|+.|++.+|..
T Consensus 191 l~~l~l~~N~~ 201 (361)
T 2xot_A 191 KNGLYLHNNPL 201 (361)
T ss_dssp HTTEECCSSCE
T ss_pred cceEEecCCCc
Confidence 47788877664
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=4.8e-15 Score=139.70 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=108.1
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc-h--hhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccCC
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI-T--VIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~n 518 (679)
+.+++++|+++.+|..+.. +|++|++++|.++.+ + .++.+++|++|+|++|.|+.+ |..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5789999999999986654 899999999999884 2 388999999999999999977 678899999999999998
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
. +..+++..|..+++|++|++++|.+ .+..|..|..+++|+.|++++|.++
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8 4555555588999999999999998 6667888999999999999999887
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.4e-17 Score=183.39 Aligned_cols=194 Identities=16% Similarity=0.104 Sum_probs=130.2
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCC-------------CCC--chhhcCCCCCcEEE-cccccccccch-
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCK-------------LLD--ITVIRDLKKLEVLC-LRGSDIKRLPV- 502 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~-------------l~~--~~~~~~l~~L~~L~-L~~n~i~~lp~- 502 (679)
++|+.|++++|.++.+|+.+++|++|+.|++++|. +.+ +..++.+++|+.|+ ++.|.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 67888899999998889889999999999887664 222 35577788888887 66665544442
Q ss_pred -----hhhc--CcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeec
Q 005747 503 -----EVGE--LTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD 575 (679)
Q Consensus 503 -----~i~~--l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 575 (679)
.+.. ...|+.|+|++|. +..+|. ++.+++|+.|++++|.+ . .+|..|+++++|+.|+|++|.
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l-------~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRL-------R-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCC-------C-CCCGGGGGCTTCCEEECCSSC
T ss_pred hhhcccccccCccCceEEEecCCC-CCCCcC--ccccccCcEeecCcccc-------c-ccchhhhcCCCCCEEECCCCC
Confidence 1221 1358888888887 455775 78888888888888887 3 456788888888888888888
Q ss_pred CCCCCCcc-cccccceeEEEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCc
Q 005747 576 VNTLPRGL-FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDK 654 (679)
Q Consensus 576 l~~lp~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~ 654 (679)
++.+| .+ .+++|+.|++++|.+..... +..+..+++|+.|+|++|++..+......+ .
T Consensus 498 l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~-------------------p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l-~ 556 (567)
T 1dce_A 498 LENVD-GVANLPRLQELLLCNNRLQQSAA-------------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERL-A 556 (567)
T ss_dssp CCCCG-GGTTCSSCCEEECCSSCCCSSST-------------------TGGGGGCTTCCEEECTTSGGGGSSSCTTHH-H
T ss_pred CCCCc-ccCCCCCCcEEECCCCCCCCCCC-------------------cHHHhcCCCCCEEEecCCcCCCCccHHHHH-H
Confidence 88887 44 77777777776665544310 111223577788888877633332111111 1
Q ss_pred CCCCCccEEEE
Q 005747 655 VGPSQLKHLYI 665 (679)
Q Consensus 655 ~~~~~L~~L~l 665 (679)
..+|+|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 33677777753
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.5e-15 Score=135.35 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=105.4
Q ss_pred CceEEEEeecccCC--CCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccc-cchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLL--SLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKR-LPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~l~ 516 (679)
++++.|++++|.++ .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 57999999999998 7888889999999999999999888888999999999999999997 78777889999999999
Q ss_pred CCcCccccC-hhhhcCCcccceeecCCCCCCcchhhhccccc---ccccccCCCcEEEEE
Q 005747 517 DCRELEIIP-PNVLSKLSHLEELYMGPRSFDKWEVEVEGVKN---ASLHELKHLISLELQ 572 (679)
Q Consensus 517 ~n~~~~~lp-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 572 (679)
+|.+ ..+| ...++.+++|++|++++|.+. +..+ ..+..+++|+.|+++
T Consensus 97 ~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKI-KDLSTIEPLKKLENLKSLDLFNCEVT-------NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCC-CSHHHHGGGGGCTTCCEEECTTCGGG-------GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcC-CChHHHHHHhhCCCCCEEeCcCCccc-------chHHHHHHHHHHCCCcccccCC
Confidence 9884 4443 133889999999999999883 3333 468888999988764
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.4e-14 Score=138.56 Aligned_cols=147 Identities=24% Similarity=0.305 Sum_probs=123.3
Q ss_pred CceEEEEeecccCCCCCcc-ccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEec
Q 005747 440 EQVRVINVSYMNLLSLPSS-LGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDL 515 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l 515 (679)
++++.|++++|.++.+|+. |..+++|++|++++|.++.+ ..+..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 5899999999999988764 78999999999999999984 3478999999999999999988765 689999999999
Q ss_pred cCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcccccccceeEEEE
Q 005747 516 RDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKLERYKILI 595 (679)
Q Consensus 516 ~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 595 (679)
++|. +..+|+..+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+.. .+++|+.|+++.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~L~~~~ 174 (208)
T 2o6s_A 108 NTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL-------KSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWI 174 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECCSCCBCC-----CTTTTHHHHHHH
T ss_pred CCCc-CcccCHhHhccCCcCCEEECCCCcc-------ceeCHHHhccCCCccEEEecCCCeec-----CCCCHHHHHHHH
Confidence 9998 5567776689999999999999998 44455668999999999999997663 345666666655
Q ss_pred cCcc
Q 005747 596 GGVW 599 (679)
Q Consensus 596 ~~~~ 599 (679)
|...
T Consensus 175 n~~~ 178 (208)
T 2o6s_A 175 NKHS 178 (208)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 5433
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=6.9e-15 Score=160.97 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=123.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCc
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCR 519 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~ 519 (679)
++|+.|++++|.++.+| ..+++|++|+|++|.++.++.+.+ +|++|+|++|.++.+|. .+++|+.|++++|.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc
Confidence 57999999999999999 568999999999999999655555 99999999999999997 78999999999998
Q ss_pred CccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCccccccc-------ceeE
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGLFLEKL-------ERYK 592 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~l~~L-------~~L~ 592 (679)
++.+|. .+++|++|++++|.+. + +|. |. ++|+.|+|++|.|+.+|. +. .+| +.|+
T Consensus 152 -l~~lp~----~l~~L~~L~Ls~N~L~-------~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~-~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 152 -LTMLPE----LPTSLEVLSVRNNQLT-------F-LPE-LP--ESLEALDVSTNLLESLPA-VP-VRNHHSEETEIFFR 213 (571)
T ss_dssp -CSCCCC----CCTTCCEEECCSSCCS-------C-CCC-CC--TTCCEEECCSSCCSSCCC-CC---------CCEEEE
T ss_pred -cCcCCC----cCCCcCEEECCCCCCC-------C-cch-hh--CCCCEEECcCCCCCchhh-HH-HhhhcccccceEEe
Confidence 455776 5789999999999983 3 454 55 899999999999999998 42 256 6777
Q ss_pred EEEcCccccccccccccEEEEecCccccchHHHHHHhcccceeeccccc
Q 005747 593 ILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLE 641 (679)
Q Consensus 593 l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 641 (679)
+++|.+..+ +..++. +++|+.|+|++|+
T Consensus 214 Ls~N~l~~l--------------------p~~l~~-l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 214 CRENRITHI--------------------PENILS-LDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCCCC--------------------CGGGGG-SCTTEEEECCSSS
T ss_pred cCCCcceec--------------------CHHHhc-CCCCCEEEeeCCc
Confidence 766655433 333333 5677777777776
No 121
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.54 E-value=1.5e-13 Score=142.79 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=130.3
Q ss_pred CCCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc------CHHHH
Q 005747 125 PNKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ------DIRKI 198 (679)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~~~l 198 (679)
|...+..|+||++++++|.+++..+ +++.|+|++|+|||||++++++... .+|+++.... +...+
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHH
Confidence 4455678999999999999998764 7999999999999999999998741 6788776543 56677
Q ss_pred HHHHHHHhCCC-----------------CC--ccchhHHHHHHHHHHHcCCceEEEEecCCCccc---------hhhcCC
Q 005747 199 QREIADKLGLK-----------------FD--EESESGRARRLHDRLKKEKRILVILDNIWGNLD---------LKAAGI 250 (679)
Q Consensus 199 ~~~i~~~l~~~-----------------~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~ 250 (679)
...+.+.+... .. ...-......+.+.....++++||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 77777665420 00 011112222333223222389999999976432 121211
Q ss_pred CCCCCCCCcEEEEeecCcchhcc---------cC--CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHc
Q 005747 251 PHGDDHRGCKVLLTARSLDTLST---------KM--DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKEC 319 (679)
Q Consensus 251 ~~~~~~~gs~iivTtR~~~v~~~---------~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~ 319 (679)
.. ...++.++|+|++....... .. .....+++.+|+.+|+.+++...+....... -.+...+|++.|
T Consensus 158 ~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~t 235 (350)
T 2qen_A 158 AY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELL 235 (350)
T ss_dssp HH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHH
T ss_pred HH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Confidence 11 11246789999886532110 01 1124799999999999999987653211111 135778999999
Q ss_pred CCChHHHHHHHHHhh
Q 005747 320 AGLPVAIVTVATALR 334 (679)
Q Consensus 320 ~glPlai~~~~~~L~ 334 (679)
+|+|+++..++..+.
T Consensus 236 gG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 236 DGIPGWLVVFGVEYL 250 (350)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887654
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=135.05 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=83.4
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcC
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRE 520 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~ 520 (679)
+++++++|.++.+|..+. ++|++|+|++|.++. +..+..+++|++|+|++|.|+.++. .+..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 356777777777776543 567777777777766 3566777777777777777776653 46677777777777766
Q ss_pred ccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 521 LEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 521 ~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
+..+++..|..+++|++|+|++|.+ ....+..|..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDI-------SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCC-------CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCC-------CeeChhhhhcCccccEEEeCCCCee
Confidence 4445544467777777777777776 3333445666777777777766654
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.2e-14 Score=134.96 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=75.4
Q ss_pred CceEEEEeecccCCCCCccccCCC-CCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhh-hcCcCCCEEeccC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLS-NLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEV-GELTLLRLLDLRD 517 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~l~~ 517 (679)
.+|+.|++++|.++.+|. +..+. +|++|++++|.++.++.++.+++|++|++++|.|+.+|..+ ..+++|++|++++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 456666666666666643 33333 66666666666666655666666666666666666665443 5666666666666
Q ss_pred CcCccccCh-hhhcCCcccceeecCCCCCCcchhhhcccccc----cccccCCCcEEEEEeecCC
Q 005747 518 CRELEIIPP-NVLSKLSHLEELYMGPRSFDKWEVEVEGVKNA----SLHELKHLISLELQIQDVN 577 (679)
Q Consensus 518 n~~~~~lp~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~n~l~ 577 (679)
|. ++.+|. ..+..+++|++|++++|.+.. .|. .+..+++|+.|+++.|.+.
T Consensus 98 N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~--------~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 98 NS-LVELGDLDPLASLKSLTYLCILRNPVTN--------KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CC-CCCGGGGGGGGGCTTCCEEECCSSGGGG--------STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred Cc-CCcchhhHhhhcCCCCCEEEecCCCCCC--------cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 65 344554 125566666666666666521 222 2555666666666665543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.2e-14 Score=134.99 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=115.1
Q ss_pred cccCCCCCCEEEcCCCCCCCchhhcCCC-CCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccc
Q 005747 458 SLGLLSNLQTLSLYNCKLLDITVIRDLK-KLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLE 536 (679)
Q Consensus 458 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~ 536 (679)
.+..+.+|+.|++++|.++.++.+..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|+..+..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 4678899999999999999877777776 999999999999988 578999999999999998 5677877679999999
Q ss_pred eeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc----c-cccccceeEEEEcCcc
Q 005747 537 ELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG----L-FLEKLERYKILIGGVW 599 (679)
Q Consensus 537 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~----~-~l~~L~~L~l~~~~~~ 599 (679)
+|++++|.+..++. ...+..+++|+.|++++|.++.+|.. + .+++|+.|+++.|...
T Consensus 92 ~L~L~~N~i~~~~~------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGD------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGG------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchh------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999843321 13788999999999999999999885 4 8899999999877643
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=7.7e-15 Score=166.63 Aligned_cols=112 Identities=24% Similarity=0.271 Sum_probs=53.9
Q ss_pred CccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcc
Q 005747 456 PSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSH 534 (679)
Q Consensus 456 p~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~ 534 (679)
|..+..+++|+.|+|++|.+.. +..+.++++|++|+|++|.|+.+|..++.|++|++|+|++|. +..+|.. |++|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCC
Confidence 3344455555555555555544 233445555555555555555555555555555555555554 2244444 455555
Q ss_pred cceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 535 LEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 535 L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
|++|+|++|.+ . .+|..|++|++|+.|+|++|.++
T Consensus 295 L~~L~L~~N~l-------~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNMV-------T-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSCC-------C-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCCC-------C-ccChhhhcCCCccEEeCCCCccC
Confidence 55555555544 1 23444555555555555555554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=2.7e-14 Score=131.42 Aligned_cols=134 Identities=21% Similarity=0.198 Sum_probs=114.2
Q ss_pred CCCCCCEEEcCCCCCC--C-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccce
Q 005747 461 LLSNLQTLSLYNCKLL--D-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEE 537 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~--~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~ 537 (679)
..++|+.|++++|.++ . +..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|.. +..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCE
Confidence 4578999999999998 4 45579999999999999999988 67899999999999999966656654 778999999
Q ss_pred eecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC----cc-cccccceeEEEEcCccccc
Q 005747 538 LYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR----GL-FLEKLERYKILIGGVWGWE 602 (679)
Q Consensus 538 L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~----~~-~l~~L~~L~l~~~~~~~~~ 602 (679)
|++++|.+..++ .+..+..+++|+.|++++|.++.+|. .+ .+++|+.|+++.|.....+
T Consensus 100 L~Ls~N~l~~~~------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDIS------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSG------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcch------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999984332 23678899999999999999999887 44 7999999999998876654
No 127
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=4e-13 Score=139.90 Aligned_cols=204 Identities=12% Similarity=0.154 Sum_probs=128.5
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-----cCHHHHHH
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-----QDIRKIQR 200 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~l~~ 200 (679)
...+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+++.... ..+|+++... .+...+..
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHH
Confidence 3456789999999999999 765 69999999999999999999988642 2578887643 34455555
Q ss_pred HHHHHhC--------------C----CCCc--cc------hhHHHHHHHHHHHc-C-CceEEEEecCCCcc-----chhh
Q 005747 201 EIADKLG--------------L----KFDE--ES------ESGRARRLHDRLKK-E-KRILVILDNIWGNL-----DLKA 247 (679)
Q Consensus 201 ~i~~~l~--------------~----~~~~--~~------~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~-----~~~~ 247 (679)
.+.+.+. . .... .. .......+.+.+.+ . ++++||+||++... ++..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 5544331 0 0000 00 01123345555542 1 38999999996632 2211
Q ss_pred cCCCCCCCCCCcEEEEeecCcchhcc---------cCC-C-cceEEecCCChHHHHHHHHHHhCC-CCCCccHHHHHHHH
Q 005747 248 AGIPHGDDHRGCKVLLTARSLDTLST---------KMD-S-QKNFSVSFLKEEEAWSLFKKMAGD-YVEGNELKEVARDV 315 (679)
Q Consensus 248 l~~~~~~~~~gs~iivTtR~~~v~~~---------~~~-~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~I 315 (679)
+...+....++.++|+|++....... ... . ...+++.+|+.+|+.+++...+.. ...... . .+|
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHH
Confidence 11111111246789999997543211 011 1 258999999999999999876531 111112 1 789
Q ss_pred HHHcCCChHHHHHHHHHhhcCCChhHH
Q 005747 316 AKECAGLPVAIVTVATALRDNNSLFDW 342 (679)
Q Consensus 316 ~~~~~glPlai~~~~~~L~~~~~~~~w 342 (679)
++.|+|+|+++..++..+....+..+|
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~ 262 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFA 262 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHH
Confidence 999999999999998876542333333
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=6.8e-15 Score=167.06 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=113.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
..|+.|+|++|.+..+|..+.++++|++|+|++|.++. +..|+++++|++|+|++|.|+.+|..++.|++|++|+|++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC
Confidence 67999999999999999888899999999999999988 56799999999999999999999999999999999999998
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCC-CcEEEEEeecCC-CCCCcccccccceeEEEEc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVN-TLPRGLFLEKLERYKILIG 596 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~~ 596 (679)
. ++.+|.. |++|++|++|+|++|.+ .+.+|..+..+.. +..|++++|.++ .+|. .|..|+++.|
T Consensus 304 ~-l~~lp~~-~~~l~~L~~L~L~~N~l-------~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----~l~~l~l~~n 369 (727)
T 4b8c_D 304 M-VTTLPWE-FGNLCNLQFLGVEGNPL-------EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----ERRFIEINTD 369 (727)
T ss_dssp C-CCCCCSS-TTSCTTCCCEECTTSCC-------CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----C---------
T ss_pred C-CCccChh-hhcCCCccEEeCCCCcc-------CCCChHHHhhcchhhhHHhhccCcccCcCcc-----ccceeEeecc
Confidence 7 6788988 89999999999999998 5556666655432 234678888887 3443 3455555544
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=1.6e-13 Score=127.37 Aligned_cols=128 Identities=27% Similarity=0.376 Sum_probs=102.2
Q ss_pred eEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCC
Q 005747 442 VRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC 518 (679)
Q Consensus 442 L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n 518 (679)
.+.+++++++++.+|..+ .++|+.|++++|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 357888889998888654 37899999999998873 3478889999999999999988764 578899999999998
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL 579 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l 579 (679)
. ++.+|...+..+++|++|++++|.+ .+..+..+..+++|+.|++++|.+...
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 K-LQSLPNGVFDKLTQLKELALDTNQL-------KSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred C-ccccCHHHhhCCcccCEEECcCCcc-------eEeCHHHhcCCcccCEEEecCCCeecc
Confidence 7 5566666678889999999999888 434445567888899999998887743
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.1e-14 Score=160.19 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=84.3
Q ss_pred EEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCcccc
Q 005747 445 INVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEII 524 (679)
Q Consensus 445 L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~l 524 (679)
+.+++|.++.+|. ..|++|+|++|.++.++.++.+++|++|+|++|.|+.+|..++.+++|+.|+|++|.+ +.+
T Consensus 428 l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~l 501 (567)
T 1dce_A 428 KFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENV 501 (567)
T ss_dssp HHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCC
T ss_pred hhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC-CCC
Confidence 3344455544432 1366777777777665556777777777777777777777777777777777777663 335
Q ss_pred ChhhhcCCcccceeecCCCCCCcchhhhcccc-cccccccCCCcEEEEEeecCCCCCCcc-----cccccceeE
Q 005747 525 PPNVLSKLSHLEELYMGPRSFDKWEVEVEGVK-NASLHELKHLISLELQIQDVNTLPRGL-----FLEKLERYK 592 (679)
Q Consensus 525 p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~lp~~~-----~l~~L~~L~ 592 (679)
| . ++++++|++|+|++|.+ .+.. |..++++++|+.|++++|.++.+|+.. .+++|+.|+
T Consensus 502 p-~-l~~l~~L~~L~Ls~N~l-------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-G-VANLPRLQELLLCNNRL-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-G-GTTCSSCCEEECCSSCC-------CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-c-cCCCCCCcEEECCCCCC-------CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5 3 66777777777777766 3333 666777777777777777776665543 255666553
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=129.79 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=109.1
Q ss_pred CCEEEcCCCCCCCch-hhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCC
Q 005747 465 LQTLSLYNCKLLDIT-VIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPR 543 (679)
Q Consensus 465 L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n 543 (679)
-+++++++|.++.++ .+ .++|++|+|++|.|+.+|..+..+++|++|+|++|. +..+++..|.++++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 368999999998844 33 368999999999999999999999999999999998 55666666999999999999999
Q ss_pred CCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcCcc
Q 005747 544 SFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGGVW 599 (679)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~~~ 599 (679)
.+ ....+..|.++++|+.|+|++|.++.+|... .+++|+.|++.+|...
T Consensus 89 ~l-------~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RL-------RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CC-------CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cc-------CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99 5566778999999999999999999998864 7899999999877643
No 132
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=2e-12 Score=137.46 Aligned_cols=248 Identities=17% Similarity=0.111 Sum_probs=151.8
Q ss_pred cccccchHHHHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhccC---CCCC-eEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDAL-K----N--GDVNTLGI--YGIGGIGKTTLAKEVARRAEND---KLFD-QVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~v~~~~~~ 195 (679)
+..++||+++++++.+++ . . ...+.+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367899999999999988 4 2 34567777 9999999999999999876431 1122 3678888777789
Q ss_pred HHHHHHHHHHhCCCCCc--cchhHHHHHHHHHHH-cCCceEEEEecCCCcc--------chhhcCCCC---CCCC--CCc
Q 005747 196 RKIQREIADKLGLKFDE--ESESGRARRLHDRLK-KEKRILVILDNIWGNL--------DLKAAGIPH---GDDH--RGC 259 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--------~~~~l~~~~---~~~~--~gs 259 (679)
..++..++++++..... .+.......+.+.+. .+++++||+||++... .+..+...+ +..+ .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999999765331 122333445555553 3678999999997632 222221111 1112 344
Q ss_pred EEEEeecCcchhc--------ccCCCcceEEecCCChHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHcC------CChH
Q 005747 260 KVLLTARSLDTLS--------TKMDSQKNFSVSFLKEEEAWSLFKKMAGDY-VEGNELKEVARDVAKECA------GLPV 324 (679)
Q Consensus 260 ~iivTtR~~~v~~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~I~~~~~------glPl 324 (679)
.+|+||+...... ........+.+.+|+.++++++|...+... ....--.+....|++.|+ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 5887887544221 001112239999999999999997664310 011112467888999999 9997
Q ss_pred HHHHHHHHhh-----cCC---ChhHHHHHHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChhHHHHHHHHhccc
Q 005747 325 AIVTVATALR-----DNN---SLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLIGYT 390 (679)
Q Consensus 325 ai~~~~~~L~-----~~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~f 390 (679)
.+..+..... ... +...+..+...... ...+.-++..||++ .+.++..++.+
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l 320 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEA 320 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHH
Confidence 6555543221 111 23334444333110 12234456778876 67777777654
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=4.3e-14 Score=157.97 Aligned_cols=223 Identities=17% Similarity=0.131 Sum_probs=157.4
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--c-hhhcCCCCCcEEEccccccc--ccchhhhcCcCCCEEe
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--I-TVIRDLKKLEVLCLRGSDIK--RLPVEVGELTLLRLLD 514 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~ 514 (679)
++|+.|+++++....+|..+..+++|++|+|++|.++. + ..+..+++|++|+++ +.+. .++.....+++|++|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEE
Confidence 67888999887777788888899999999999999765 2 346889999999999 4444 4455557889999999
Q ss_pred ccC----------CcCccc-cChhhhcCCcccceeecCCCCCCcchhhhcccccccccc-cCCCcEEEEE----eecCCC
Q 005747 515 LRD----------CRELEI-IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHE-LKHLISLELQ----IQDVNT 578 (679)
Q Consensus 515 l~~----------n~~~~~-lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~----~n~l~~ 578 (679)
+++ |+.++. -....+..+++|++|+++.|.+ .+..+..+.. +++|+.|+++ +|.++.
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l-------~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI-------TNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC-------CHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc-------cHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 994 433432 1223345689999999988877 4444455555 8899999997 677876
Q ss_pred CCCc------c-cccccceeEEEEcCc--cc-----cccccccccEEEEecCcccc-chHHHHHHhcccceeeccccccc
Q 005747 579 LPRG------L-FLEKLERYKILIGGV--WG-----WEYADIWCREFKIDLDSKIR-LKDGLILKLQGIEDLWLSDLEER 643 (679)
Q Consensus 579 lp~~------~-~l~~L~~L~l~~~~~--~~-----~~~~~~~l~~l~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~ 643 (679)
.|.. + .+++|+.|+++.|.. .. +....+.++.|.++.+.... ........+++|+.|++++|.+.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 5432 3 688999999986442 11 11224568899998765432 12334445789999999999732
Q ss_pred cccccccccCcCCCCCccEEEEecCcCccC
Q 005747 644 DVNYFVNELDKVGPSQLKHLYIRGSHLTLN 673 (679)
Q Consensus 644 ~l~~i~~~l~~~~~~~L~~L~l~~n~l~~l 673 (679)
. ..++... ..+++|++|+|++|+++..
T Consensus 502 ~-~~~~~~~--~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 502 E-RAIAAAV--TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp H-HHHHHHH--HHCSSCCEEEEESCBCCTT
T ss_pred H-HHHHHHH--HhcCccCeeECcCCcCCHH
Confidence 1 1122222 4579999999999998753
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=3.4e-14 Score=127.93 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=106.0
Q ss_pred CCCCCCEEEcCCCCCC--C-chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccce
Q 005747 461 LLSNLQTLSLYNCKLL--D-ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEE 537 (679)
Q Consensus 461 ~l~~L~~L~L~~n~l~--~-~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~ 537 (679)
..++|+.|++++|.++ . +..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|.. +..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCE
Confidence 3478999999999998 3 56679999999999999999988 67899999999999999965556654 778999999
Q ss_pred eecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC----cc-cccccceeEE
Q 005747 538 LYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR----GL-FLEKLERYKI 593 (679)
Q Consensus 538 L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~----~~-~l~~L~~L~l 593 (679)
|++++|.+...+ .+..++.+++|+.|++++|.++.+|. .+ .+++|+.|++
T Consensus 93 L~ls~N~i~~~~------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLS------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHH------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChH------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999984321 34678999999999999999998887 33 7888888765
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=3.4e-13 Score=126.91 Aligned_cols=125 Identities=22% Similarity=0.299 Sum_probs=105.3
Q ss_pred CCEEEcCCCCCCCch-hhcCCCCCcEEEcccccccccchh--hhcCcCCCEEeccCCcCccccChhhhcCCcccceeecC
Q 005747 465 LQTLSLYNCKLLDIT-VIRDLKKLEVLCLRGSDIKRLPVE--VGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMG 541 (679)
Q Consensus 465 L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~i~~lp~~--i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~ 541 (679)
-+++++++|.++.++ .+. .+|++|++++|.++.+|.. +..+++|++|+|++|.+.+..|.. |.++++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECC
Confidence 378999999998843 343 3999999999999988764 899999999999999865554555 8999999999999
Q ss_pred CCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC-CCcc-cccccceeEEEEcCcc
Q 005747 542 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL-PRGL-FLEKLERYKILIGGVW 599 (679)
Q Consensus 542 ~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~-~l~~L~~L~l~~~~~~ 599 (679)
+|.+ .+..+..|.++++|++|++++|+++.+ |..+ .+++|+.|++++|.+.
T Consensus 87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKI-------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCC-------CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcC-------CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999 566677899999999999999999976 4445 7899999999777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=4.6e-15 Score=140.65 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=115.1
Q ss_pred ceEEEEeecc--cCCCCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 441 QVRVINVSYM--NLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 441 ~L~~L~l~~n--~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
.++.+.++++ .++.+|..+..+++|++|++++|.++.++.+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 4455555544 45566668999999999999999999977899999999999999999999988888999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc-----------c-ccc
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG-----------L-FLE 586 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-----------~-~l~ 586 (679)
. +..+| . +..+++|++|++++|.+..++. ...+..+++|+.|++++|.++..++. + .++
T Consensus 104 ~-l~~l~-~-~~~l~~L~~L~l~~N~i~~~~~------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 104 Q-IASLS-G-IEKLVNLRVLYMSNNKITNWGE------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp E-CCCHH-H-HHHHHHSSEEEESEEECCCHHH------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred c-CCcCC-c-cccCCCCCEEECCCCcCCchhH------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 8 45566 4 7899999999999999854321 14678899999999999998744221 3 677
Q ss_pred ccceeE
Q 005747 587 KLERYK 592 (679)
Q Consensus 587 ~L~~L~ 592 (679)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777765
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=2.3e-12 Score=119.51 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=107.2
Q ss_pred CCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCC
Q 005747 464 NLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGP 542 (679)
Q Consensus 464 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~ 542 (679)
..+.+++++|.++.++. .-.++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCC
Confidence 35789999999988542 2347999999999999988764 5899999999999998 5677777689999999999999
Q ss_pred CCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcCcc
Q 005747 543 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGGVW 599 (679)
Q Consensus 543 n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~~~ 599 (679)
|.+ .+..+..+.++++|+.|++++|.++.+|... .+++|+.|++++|.+.
T Consensus 86 N~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKL-------QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-------cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999 4555667889999999999999999998865 6899999999877643
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=6.4e-13 Score=148.46 Aligned_cols=222 Identities=13% Similarity=0.065 Sum_probs=116.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcC---------------------------CCCCCC-chhhcCCCCCcEEE
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLY---------------------------NCKLLD-ITVIRDLKKLEVLC 491 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~---------------------------~n~l~~-~~~~~~l~~L~~L~ 491 (679)
++|+.|++++|.+..+|..+..+++|+.|+++ ++.... +..+..+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 45566666665555555445555555555554 322222 22334455555555
Q ss_pred ccccccc--ccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCC-----------CCCCcchhhhcccccc
Q 005747 492 LRGSDIK--RLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGP-----------RSFDKWEVEVEGVKNA 558 (679)
Q Consensus 492 L~~n~i~--~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~-----------n~~~~~~~~~~~~~~~ 558 (679)
|++|.++ .++..+..+++|+.|+++++ .........+..+++|++|++++ |.+.. ...+.
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~------~~~~~ 372 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ------RGLIA 372 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH------HHHHH
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH------HHHHH
Confidence 5555544 12223455555555555532 12222222234556666666662 23311 01122
Q ss_pred cccccCCCcEEEEEeecCCC-CCCcc--cccccceeEEEEc----Ccccc---------ccccccccEEEEecCcc-c--
Q 005747 559 SLHELKHLISLELQIQDVNT-LPRGL--FLEKLERYKILIG----GVWGW---------EYADIWCREFKIDLDSK-I-- 619 (679)
Q Consensus 559 ~l~~l~~L~~L~l~~n~l~~-lp~~~--~l~~L~~L~l~~~----~~~~~---------~~~~~~l~~l~l~~~~~-~-- 619 (679)
.+..+++|+.|++++|.++. .+..+ .+++|+.|+++.+ .+... ......++.|.++.+.. +
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 23457778888887777763 22222 3777888888643 22221 11244677787764332 1
Q ss_pred cchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCc
Q 005747 620 RLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 620 ~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
.....+...+++|+.|++++|.+... .++..+ ..+++|++|+|++|+++
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEESCCCB
T ss_pred HHHHHHHHhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccCCCCc
Confidence 11233444478899999998873221 122222 66799999999999975
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=2.8e-12 Score=118.34 Aligned_cols=100 Identities=26% Similarity=0.458 Sum_probs=65.7
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCCc
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCR 519 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n~ 519 (679)
+.+++++|.++.+|..+. ++|++|+|++|.++.+ ..|.++++|++|+|++|+|+.+|.. +..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 466777777777776553 6677777777777662 3466677777777777777766654 3566677777776665
Q ss_pred CccccChhhhcCCcccceeecCCCCC
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSF 545 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~ 545 (679)
+..+|+..|..+++|++|++++|.+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -cceeCHHHhccccCCCEEEeCCCCc
Confidence 4455555466666666666666665
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=3.5e-12 Score=117.29 Aligned_cols=100 Identities=26% Similarity=0.433 Sum_probs=63.7
Q ss_pred EEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccchh-hhcCcCCCEEeccCCc
Q 005747 443 RVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCR 519 (679)
Q Consensus 443 ~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~l~~n~ 519 (679)
+.+++++|.++.+|..+. ++|++|+|++|.++.+ ..|.++++|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 466777777777766543 6677777777776662 3466666677777776666666554 3566666666666665
Q ss_pred CccccChhhhcCCcccceeecCCCCC
Q 005747 520 ELEIIPPNVLSKLSHLEELYMGPRSF 545 (679)
Q Consensus 520 ~~~~lp~~~~~~l~~L~~L~l~~n~~ 545 (679)
+..+|+..|..+++|++|++++|.+
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4445554466666666666666655
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=7.5e-14 Score=132.24 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=108.1
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCc-hhhcCCCCCcEEEcccccccccchhhhcCcCCCEEeccCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDI-TVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 518 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~~n 518 (679)
++|+.|++++|.++.+| .+.++++|++|++++|.++.+ ..+..+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC
Confidence 68999999999999998 899999999999999999884 55677899999999999999988 6999999999999999
Q ss_pred cCccccCh-hhhcCCcccceeecCCCCCCcchhhhcccccc----------cccccCCCcEEEEEeecCCC
Q 005747 519 RELEIIPP-NVLSKLSHLEELYMGPRSFDKWEVEVEGVKNA----------SLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 519 ~~~~~lp~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~----------~l~~l~~L~~L~l~~n~l~~ 578 (679)
. +..+|. ..+..+++|++|++++|.+. +..|. .+..+++|+.|+ +|.++.
T Consensus 126 ~-i~~~~~~~~l~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 126 K-ITNWGEIDKLAALDKLEDLLLAGNPLY-------NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp E-CCCHHHHHHHTTTTTCSEEEECSCHHH-------HHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred c-CCchhHHHHHhcCCCCCEEEecCCccc-------cccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8 455544 34889999999999999883 33333 378899999987 666653
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=6.2e-11 Score=124.63 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=148.5
Q ss_pred ccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC-----CC-CCeEEEEEcCCCc-CHHHH
Q 005747 130 EAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAEND-----KL-FDQVVFSEVSESQ-DIRKI 198 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~-F~~~~wv~v~~~~-~~~~l 198 (679)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... .. ...++|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 578999999999987775 3446789999999999999999999875321 11 3457888887777 88889
Q ss_pred HHHHHHHh-CCCCC--ccchhHHHHHHHHHHHcCCceEEEEecCCCccc-------hhhcCCCCCCCCCCcEEEEeecCc
Q 005747 199 QREIADKL-GLKFD--EESESGRARRLHDRLKKEKRILVILDNIWGNLD-------LKAAGIPHGDDHRGCKVLLTARSL 268 (679)
Q Consensus 199 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtR~~ 268 (679)
+..+++.+ +.... ..........+...+.. ++.+||+||++.... +..+.... .+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 99998887 33221 12223445556666653 344999999976421 22222211 677899999865
Q ss_pred ch---hccc--CCCcceEEecCCChHHHHHHHHHHhCC-CCCCccHHHHHHHHHHHcC---CChH-HHHHHHHHhh----
Q 005747 269 DT---LSTK--MDSQKNFSVSFLKEEEAWSLFKKMAGD-YVEGNELKEVARDVAKECA---GLPV-AIVTVATALR---- 334 (679)
Q Consensus 269 ~v---~~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~I~~~~~---glPl-ai~~~~~~L~---- 334 (679)
.. .... ......+.+.+++.++..++|...+.. .....--.+..+.+++.++ |.|. |+..+..+..
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 21 1100 111238999999999999999987531 1001111245677888887 8876 4444333321
Q ss_pred -cCCChhHHHHHHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChhHHHHHHHHhc
Q 005747 335 -DNNSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLIG 388 (679)
Q Consensus 335 -~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s 388 (679)
..-+.+.+..++.... ...+.-++..|+++ .+..+..++
T Consensus 255 ~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~ 294 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLI 294 (384)
T ss_dssp SSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHH
Confidence 1125666666665431 23345556677765 344443333
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.30 E-value=4.4e-11 Score=117.05 Aligned_cols=185 Identities=14% Similarity=0.196 Sum_probs=118.1
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC-------------------eEEE
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFD-------------------QVVF 186 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~w 186 (679)
.....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+. ..+.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 345678999999999999987543 46899999999999999999998765432110 1111
Q ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCc--cchhhcCCCCCCCCCCcE
Q 005747 187 SEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCK 260 (679)
Q Consensus 187 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 260 (679)
+...... .......+.+.+. .+++.+||+||++.. ..+..+...+.....+.+
T Consensus 100 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 100 IDAASRT---------------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp EETTCGG---------------------GHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEE
T ss_pred ecCcccc---------------------cHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceE
Confidence 1111110 1111122222211 246799999999663 334444333333345778
Q ss_pred EEEeecCcchhc-ccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 005747 261 VLLTARSLDTLS-TKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATAL 333 (679)
Q Consensus 261 iivTtR~~~v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L 333 (679)
+|+||+...... ........+++.+++.++..+++...+....... -.+....|++.|+|.|..+..+...+
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888887644321 1122246899999999999999998775322111 14567889999999999888776544
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.29 E-value=4.9e-11 Score=114.93 Aligned_cols=190 Identities=11% Similarity=0.092 Sum_probs=120.5
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567899999999999999876665699999999999999999998754321112345555555444443333222211
Q ss_pred CCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcchhc-ccCCCcceEEe
Q 005747 207 GLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLDTLS-TKMDSQKNFSV 283 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v~~-~~~~~~~~~~l 283 (679)
.... ...+++.+||+||++... ....+...+.....+.++|+||+...... ........+++
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1100 002567999999997652 23333222222345678888888643221 11122348999
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
.+++.++..+++.+.+....... -.+....+++.++|.|..+..+...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999988764211111 1356778899999999865544433
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=6.7e-11 Score=124.36 Aligned_cols=200 Identities=18% Similarity=0.190 Sum_probs=128.9
Q ss_pred cccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC-CCeEEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL-FDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
+..++||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999887 445678999999999999999999987643211 23467888777777888888888
Q ss_pred HHhCCCCCcc--chhHHHHHHHHHHHc-CCceEEEEecCCCcc------chhhcCCCCCC-CCCCcEEEEeecCcchhcc
Q 005747 204 DKLGLKFDEE--SESGRARRLHDRLKK-EKRILVILDNIWGNL------DLKAAGIPHGD-DHRGCKVLLTARSLDTLST 273 (679)
Q Consensus 204 ~~l~~~~~~~--~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~iivTtR~~~v~~~ 273 (679)
..++...... +.......+.+.+.. +++.+||+|+++... .+..+...... ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 8776543221 223334555555543 458999999986532 12222111100 2335567888876543211
Q ss_pred ------cCCCcceEEecCCChHHHHHHHHHHhCC-CCCCccHHHHHHHHHHHcC---CChHHHHH
Q 005747 274 ------KMDSQKNFSVSFLKEEEAWSLFKKMAGD-YVEGNELKEVARDVAKECA---GLPVAIVT 328 (679)
Q Consensus 274 ------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~I~~~~~---glPlai~~ 328 (679)
.......+.+.+++.++..+++...+.. .....-..+....+++.++ |.|..+..
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 0011258999999999999999886531 1011112456677777777 99884433
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1.5e-11 Score=113.43 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=88.4
Q ss_pred CCEEEcCCCCCCCc-hhhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCC
Q 005747 465 LQTLSLYNCKLLDI-TVIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGP 542 (679)
Q Consensus 465 L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~ 542 (679)
-+.+++++|.++.+ ..+ .++|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+|...|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 47899999998884 334 38899999999999987 5578899999999999987 6667877678999999999999
Q ss_pred CCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCc
Q 005747 543 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRG 582 (679)
Q Consensus 543 n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~ 582 (679)
|.+ .+..+..|.++++|+.|+|++|.+...+..
T Consensus 91 N~l-------~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 91 NHL-------KSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp SCC-------CCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred Ccc-------ceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 988 444455688899999999999998876654
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=1.6e-11 Score=112.90 Aligned_cols=108 Identities=24% Similarity=0.327 Sum_probs=87.0
Q ss_pred CCCEEEcCCCCCCCch-hhcCCCCCcEEEccccccccc-chhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecC
Q 005747 464 NLQTLSLYNCKLLDIT-VIRDLKKLEVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMG 541 (679)
Q Consensus 464 ~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~ 541 (679)
..+.+++++|.++.++ .+ .++|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+|+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 3578999999988843 34 37899999999999987 5568889999999999987 567777767889999999999
Q ss_pred CCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCC
Q 005747 542 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPR 581 (679)
Q Consensus 542 ~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~ 581 (679)
+|.+ .+..+..|.++++|+.|+|++|.++..+.
T Consensus 87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQL-------KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCC-------CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCcc-------CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9988 44455678889999999999998875544
No 148
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.22 E-value=1.8e-10 Score=121.23 Aligned_cols=241 Identities=16% Similarity=0.134 Sum_probs=148.8
Q ss_pred cccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCCcCHHHHHH
Q 005747 129 YEAFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
+..++||+++++++..++. ....+.+.|+|++|+||||+|+.+++..... ..-...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3678999999999999885 3456789999999999999999999876331 0013467888888889999999
Q ss_pred HHHHHhCCCCCcc--chhHHHHHHHHHHH-cCCceEEEEecCCCccc----hhhc---CCCCCCC--CCCcEEEEeecCc
Q 005747 201 EIADKLGLKFDEE--SESGRARRLHDRLK-KEKRILVILDNIWGNLD----LKAA---GIPHGDD--HRGCKVLLTARSL 268 (679)
Q Consensus 201 ~i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~iivTtR~~ 268 (679)
.+++.++...... ........+.+.+. .+++.+||+|+++.... .+.+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999997653322 23333555555554 35688999999976432 1211 1111111 3456778888765
Q ss_pred chh---c-c--cCCCcceEEecCCChHHHHHHHHHHhC---C-CCCCccHHHHHHHHHHHcC---CChHH-HHHHHHHhh
Q 005747 269 DTL---S-T--KMDSQKNFSVSFLKEEEAWSLFKKMAG---D-YVEGNELKEVARDVAKECA---GLPVA-IVTVATALR 334 (679)
Q Consensus 269 ~v~---~-~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~-~~~~~~~~~~~~~I~~~~~---glPla-i~~~~~~L~ 334 (679)
... . . .......+.+.+++.++..+++...+. . .... .+..+.+++.++ |.|-. +..+..+..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 221 0 0 011124789999999999999988753 1 1112 245667778887 99943 333322221
Q ss_pred -----cC--CChhHHHHHHHHhcCCCCCCcCCchhhHHHHHHhhhcCCChhHHHHHHHHh
Q 005747 335 -----DN--NSLFDWKDALEQLRRPSSTNLMNVQPTAYKAIKLSYDKLAGEELKNIFLLI 387 (679)
Q Consensus 335 -----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~ 387 (679)
+. -+.+.+..++.... ...+.-++..++++ .+..+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~ 299 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSI 299 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHH
Confidence 11 14555655555421 22344566778876 34444433
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=5.9e-12 Score=140.64 Aligned_cols=220 Identities=14% Similarity=0.084 Sum_probs=126.3
Q ss_pred CceEEE-EeecccCCCCCccccCCCCCCEEEcCCCCCCC--c-hhhcCCCCCcEEEccccccc--ccchhhhcCcCCCEE
Q 005747 440 EQVRVI-NVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--I-TVIRDLKKLEVLCLRGSDIK--RLPVEVGELTLLRLL 513 (679)
Q Consensus 440 ~~L~~L-~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L 513 (679)
++|+.| .+.+.....+|..+..+++|++|+|++|.++. + ..+..+++|++|++++| ++ .++.-...+++|+.|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 456666 33333333455555567788888888887654 2 23567788888888877 43 233333457788888
Q ss_pred eccC--------CcCccc-cChhhhcCCcccceeecCCCCCCcchhhhccccccccc-ccCCCcEEEEE--e----ecCC
Q 005747 514 DLRD--------CRELEI-IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLH-ELKHLISLELQ--I----QDVN 577 (679)
Q Consensus 514 ~l~~--------n~~~~~-lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~--~----n~l~ 577 (679)
+++. |..++. ....+...+++|++|.++.|.+. +..+..+. .+++|+.|+++ + |.++
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~-------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT-------NAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC-------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC-------HHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 7733 221221 11221234778888877777662 22233333 47788888887 3 5555
Q ss_pred CCCCc------c-cccccceeEEEEcCcccc-----ccccccccEEEEecCccccc-hHHHHHHhcccceeecccccccc
Q 005747 578 TLPRG------L-FLEKLERYKILIGGVWGW-----EYADIWCREFKIDLDSKIRL-KDGLILKLQGIEDLWLSDLEERD 644 (679)
Q Consensus 578 ~lp~~------~-~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~ 644 (679)
..|.. + .+++|+.|++++ .+... ......++.|.++.+..... ...+...+++|+.|+|++|.+.
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~- 494 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG- 494 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC-
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc-
Confidence 44321 2 567788887744 22211 11134577777776654222 1223345788999999988731
Q ss_pred ccccccccCcCCCCCccEEEEecCcCc
Q 005747 645 VNYFVNELDKVGPSQLKHLYIRGSHLT 671 (679)
Q Consensus 645 l~~i~~~l~~~~~~~L~~L~l~~n~l~ 671 (679)
...+..+ ...+++|++|++++|+++
T Consensus 495 -~~~~~~~-~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 495 -DKALLAN-ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp -HHHHHHT-GGGGGGSSEEEEESSCCB
T ss_pred -HHHHHHH-HHhCCCCCEEeeeCCCCC
Confidence 1111112 245788999999999874
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=2.3e-11 Score=124.94 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=111.3
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCCchhhcC--------CCCCcEEEcccccccccch-hhhcCcCC
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLDITVIRD--------LKKLEVLCLRGSDIKRLPV-EVGELTLL 510 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~--------l~~L~~L~L~~n~i~~lp~-~i~~l~~L 510 (679)
++|+.|||++|.+..+...-+.++.++.+.+..|.+. ...|.+ +++|+.|+|.+ .++.++. .+..+++|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccC-HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 6899999999999821111112222444555444332 133444 66677777766 6666654 45666677
Q ss_pred CEEeccCCcCccccChhhhcCCcccceeecCCCCC----Ccchh-hh--------------cccc----------c----
Q 005747 511 RLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSF----DKWEV-EV--------------EGVK----------N---- 557 (679)
Q Consensus 511 ~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~----~~~~~-~~--------------~~~~----------~---- 557 (679)
+.|++++|. +..+++..|..+.++..+.+..+.. ..+.. .+ .+.+ +
T Consensus 127 ~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 777776655 4455555566655555555443110 00000 00 0000 0
Q ss_pred -------------ccc-cccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcCccccccccccccEEEEecCccccc
Q 005747 558 -------------ASL-HELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGGVWGWEYADIWCREFKIDLDSKIRL 621 (679)
Q Consensus 558 -------------~~l-~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 621 (679)
..+ ..+++|+.|+++.|+++.+|... .+.+|+.+.+..| +..+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I-------------------- 264 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTI-------------------- 264 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEE--------------------
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-ccee--------------------
Confidence 001 13788999999998899888876 7888888887543 2221
Q ss_pred hHHHHHHhcccc-eeeccccccccccccccccCcCCCCCccEEEEecCcCccCCC
Q 005747 622 KDGLILKLQGIE-DLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 622 ~~~~~~~l~~L~-~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~ 675 (679)
+...+..+++|+ .|++.+ + +..++... +.++++|+.|++++|.++.++.
T Consensus 265 ~~~aF~~~~~L~~~l~l~~-~---l~~I~~~a-F~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA-S---VTAIEFGA-FMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT-T---CCEECTTT-TTTCTTEEEEEECSSCCCEECT
T ss_pred hHHHhhCChhccEEEEEcc-c---ceEEchhh-hhCCccCCEEEeCCCccCccch
Confidence 222333345565 666655 2 33333222 3555666666666666655554
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=5.3e-12 Score=141.06 Aligned_cols=229 Identities=18% Similarity=0.141 Sum_probs=124.6
Q ss_pred CceEEEEeecc-cCCC--CCccccCCCCCCEEEcCCCCCCC--chhh----cCCCCCcEEEccccc--cc--ccchhhhc
Q 005747 440 EQVRVINVSYM-NLLS--LPSSLGLLSNLQTLSLYNCKLLD--ITVI----RDLKKLEVLCLRGSD--IK--RLPVEVGE 506 (679)
Q Consensus 440 ~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~L~~n~l~~--~~~~----~~l~~L~~L~L~~n~--i~--~lp~~i~~ 506 (679)
++|+.|++++| .++. ++..+.++++|++|+|++|.+++ +..+ ..+++|++|++++|. ++ .++.-+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 46666666666 3332 33334466667777777666544 1222 245567777776664 22 22222345
Q ss_pred CcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCC-----------------------cchhhhccccccccccc
Q 005747 507 LTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFD-----------------------KWEVEVEGVKNASLHEL 563 (679)
Q Consensus 507 l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~-----------------------~~~~~~~~~~~~~l~~l 563 (679)
+++|++|++++|...+.+|.. +..+++|++|+++.+... .........++..+..+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred CCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 567777777766444444443 556666666665443210 00000011234444577
Q ss_pred CCCcEEEEEeecCCC--CCCcc-cccccceeEEEEcCcccc-----ccccccccEEEEec--------Cccccc--hHHH
Q 005747 564 KHLISLELQIQDVNT--LPRGL-FLEKLERYKILIGGVWGW-----EYADIWCREFKIDL--------DSKIRL--KDGL 625 (679)
Q Consensus 564 ~~L~~L~l~~n~l~~--lp~~~-~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~l~~--------~~~~~~--~~~~ 625 (679)
++|++|++++|.++. ++..+ .+++|+.|.+.+| .... ......++.|.+.. ++.+.. ...+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 889999998888662 22222 6788999998876 2211 11245678887732 122211 1223
Q ss_pred HHHhcccceeecccccccccccc-ccccCcCCCCCccEEEEe--c----CcCccCC
Q 005747 626 ILKLQGIEDLWLSDLEERDVNYF-VNELDKVGPSQLKHLYIR--G----SHLTLNP 674 (679)
Q Consensus 626 ~~~l~~L~~L~L~~~~~~~l~~i-~~~l~~~~~~~L~~L~l~--~----n~l~~lp 674 (679)
...+++|+.|.+.++. +... +..+ ...+++|+.|+++ + |.++..|
T Consensus 368 ~~~~~~L~~L~~~~~~---l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQ---MTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp HHHCTTCCEEEEEESC---CCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred HHhchhHHHHHHhcCC---cCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCc
Confidence 3447889999776655 2221 1122 1347899999999 4 5576554
No 152
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=2.1e-09 Score=113.10 Aligned_cols=198 Identities=16% Similarity=0.188 Sum_probs=132.0
Q ss_pred ccccchHHHHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 130 EAFESRMSILNEITDALKN----GDVN--TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
..++||+++++++..++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 6789999999999998863 3334 899999999999999999998875431 13477888888888899999999
Q ss_pred HHhCCCCCc--cchhHHHHHHHHHHH-cCCceEEEEecCCCcc--chhhcCCCCCC-CC---CCcEEEEeecCcchhccc
Q 005747 204 DKLGLKFDE--ESESGRARRLHDRLK-KEKRILVILDNIWGNL--DLKAAGIPHGD-DH---RGCKVLLTARSLDTLSTK 274 (679)
Q Consensus 204 ~~l~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~l~~~~~~-~~---~gs~iivTtR~~~v~~~~ 274 (679)
..++..... .........+...+. .+++.+||+|+++... .+..+...+.. .. .+..+|++|+.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~- 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN- 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT-
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH-
Confidence 998764322 122333444444443 3568899999997642 22333222211 11 36678888876533211
Q ss_pred CC-------CcceEEecCCChHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHc---------CCChHHHHHH
Q 005747 275 MD-------SQKNFSVSFLKEEEAWSLFKKMAGDY-VEGNELKEVARDVAKEC---------AGLPVAIVTV 329 (679)
Q Consensus 275 ~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~I~~~~---------~glPlai~~~ 329 (679)
.. ....+.+.+++.++..+++...+... ....--.+....+++.+ +|.|..+..+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 11 12369999999999999998876420 01111246778899999 7887544433
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=8.7e-10 Score=115.80 Aligned_cols=215 Identities=14% Similarity=0.092 Sum_probs=145.1
Q ss_pred CceEEEEeecccCCCCCc-cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLPS-SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
.+|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++. ...|.++++|+.+++++|.++.+|.......+|+.+.+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 35777777654 666654 3555 3688888875 4554 356888889999999888888888766557889999888
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
.+ +..++..+|.++++|+.+.+..| + .......|.+ ++|+.+.+ .+.++.++... .+++|+.+.+.
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~-l-------~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPEN-V-------STIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTT-C-------CEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCC-c-------cCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence 53 67788888888899999988874 4 2334456666 67888888 56677776655 67788888876
Q ss_pred EcCcc-----ccc----cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEE
Q 005747 595 IGGVW-----GWE----YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYI 665 (679)
Q Consensus 595 ~~~~~-----~~~----~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l 665 (679)
.+... .+. .....++.+.+. ++........+..+++|+.|.|.++ +..+.... +.++ +|+.|++
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~----l~~I~~~a-F~~~-~L~~l~l 352 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN----VTQINFSA-FNNT-GIKEVKV 352 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT----CCEECTTS-SSSS-CCCEEEE
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc----ccEEcHHh-CCCC-CCCEEEE
Confidence 65433 111 122345555554 2334445556666788888888653 45554443 4666 8999999
Q ss_pred ecCcCccCCCC
Q 005747 666 RGSHLTLNPAE 676 (679)
Q Consensus 666 ~~n~l~~lp~~ 676 (679)
++|.+..++..
T Consensus 353 ~~n~~~~l~~~ 363 (401)
T 4fdw_A 353 EGTTPPQVFEK 363 (401)
T ss_dssp CCSSCCBCCCS
T ss_pred cCCCCcccccc
Confidence 98887776543
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=6.8e-10 Score=113.58 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=118.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
.....++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++...........++++.++......+ +.+++.+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 445678999999999999998776555999999999999999999988533211122455555554343322 2222221
Q ss_pred CCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcchh-cccCCCcceEEe
Q 005747 207 GLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLDTL-STKMDSQKNFSV 283 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~~~l 283 (679)
..... .+..+++.++|+||++... .+..+...+.....++++|+||+..... .........+++
T Consensus 97 ~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 97 AQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 10000 0002457899999997642 2333332222234567888888764322 111223458999
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHH-HHHHHHH
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVA-IVTVATA 332 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPla-i~~~~~~ 332 (679)
.+++.++..+++...+......- -.+....|++.|+|.|.. +..+...
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999988764211111 135678899999999954 4444433
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=7e-11 Score=121.32 Aligned_cols=218 Identities=9% Similarity=-0.019 Sum_probs=135.1
Q ss_pred CceEEEEeecccCC-CCCccccC-CCCCCEEEcCCCCCCCc-hhhcCCCCCcEEEcccccccccch-hhhc--------C
Q 005747 440 EQVRVINVSYMNLL-SLPSSLGL-LSNLQTLSLYNCKLLDI-TVIRDLKKLEVLCLRGSDIKRLPV-EVGE--------L 507 (679)
Q Consensus 440 ~~L~~L~l~~n~l~-~lp~~~~~-l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~i~~lp~-~i~~--------l 507 (679)
.+++.|.++++--. .+ ..+.. +++|++|+|++|.+... ..-+.++.++.+.+..|. +|. .+.+ +
T Consensus 25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEEC
T ss_pred CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhccccccccccc
Confidence 45777777764211 11 12233 67788888888887731 111223335556665553 443 4556 8
Q ss_pred cCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEee----cCCCCCCcc
Q 005747 508 TLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ----DVNTLPRGL 583 (679)
Q Consensus 508 ~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n----~l~~lp~~~ 583 (679)
++|+.|+|.+ + +..++..+|.++++|+.|++.+|.+. ...+..|.++.++..+.+..+ ....+....
T Consensus 101 ~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~-------~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 101 QTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAP-------NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp TTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCC-------EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred CCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCcc-------ccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 9999999998 4 77788888999999999999998873 334556666655555543321 111111111
Q ss_pred ----------------------------cccccceeEEEEcCccc----cccccccccEEEEecCccccchHHHHHHhcc
Q 005747 584 ----------------------------FLEKLERYKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDGLILKLQG 631 (679)
Q Consensus 584 ----------------------------~l~~L~~L~l~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~ 631 (679)
...++..+.+..+-... +......++.+.+..+.....+...+..+++
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 13344444443321100 0111457888888877777778888888899
Q ss_pred cceeeccccccccccccccccCcCCCCCcc-EEEEecCcCccCCCC
Q 005747 632 IEDLWLSDLEERDVNYFVNELDKVGPSQLK-HLYIRGSHLTLNPAE 676 (679)
Q Consensus 632 L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~-~L~l~~n~l~~lp~~ 676 (679)
|+.|+|.+| +..++... +.++++|+ .|++.+ .++.++..
T Consensus 252 L~~l~l~~n----i~~I~~~a-F~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 252 LLKIKLPHN----LKTIGQRV-FSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CCEEECCTT----CCEECTTT-TTTCTTCCEEEEECT-TCCEECTT
T ss_pred CCEEECCcc----cceehHHH-hhCChhccEEEEEcc-cceEEchh
Confidence 999999985 55565554 68889999 999998 77777643
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=4e-10 Score=116.60 Aligned_cols=100 Identities=24% Similarity=0.200 Sum_probs=88.0
Q ss_pred EEEeecc-cCCCCCccccCCCCCCEEEcCC-CCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCC
Q 005747 444 VINVSYM-NLLSLPSSLGLLSNLQTLSLYN-CKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDC 518 (679)
Q Consensus 444 ~L~l~~n-~l~~lp~~~~~l~~L~~L~L~~-n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n 518 (679)
.++++++ +++.+|. |..+++|+.|+|++ |.++.+ ..|++|++|++|+|++|+|+.+|+ .+..|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 999883 569999999999999999998765 6799999999999999
Q ss_pred cCccccChhhhcCCcccceeecCCCCCC
Q 005747 519 RELEIIPPNVLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 519 ~~~~~lp~~~~~~l~~L~~L~l~~n~~~ 546 (679)
. +..+|+..|..++ |+.|+|.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8 6678887676666 999999999885
No 157
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.98 E-value=6.3e-10 Score=93.57 Aligned_cols=65 Identities=8% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHHhhh------HHHHhhhcch-----hhhhHHHHHHHcC-CcchHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 005747 7 DIVAEVVKCLA------PPAYRQIGNL-----RDKRKVDEAERKG-EEIEENVENWLARANNVIEDADEFTNDEATA 71 (679)
Q Consensus 7 ~~~~~~~~~l~------~~~~~~~~~~-----~i~~~l~~a~~~~-~~~~~~v~~Wl~~l~~~~yd~ed~ld~~~~~ 71 (679)
.+++++.+.+. .++++++.++ +|+++|.+|+++. ...+++++.|+++||+++||+||++|+|...
T Consensus 5 ~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 5 NLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444 3677777777 8999999999873 3468999999999999999999999998643
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=8e-10 Score=114.34 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=83.8
Q ss_pred CEEEcCCC-CCCCchhhcCCCCCcEEEccc-ccccccc-hhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCC
Q 005747 466 QTLSLYNC-KLLDITVIRDLKKLEVLCLRG-SDIKRLP-VEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGP 542 (679)
Q Consensus 466 ~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~-n~i~~lp-~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~ 542 (679)
..++++++ .++.++.+..+++|++|+|++ |.|+.+| ..+..|++|+.|+|++|. +..+|+..|.+|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 35688887 888854488999999999996 9999887 468899999999999988 5556666689999999999999
Q ss_pred CCCCcchhhhcccccccccccCCCcEEEEEeecCCCCC
Q 005747 543 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLP 580 (679)
Q Consensus 543 n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp 580 (679)
|.+ .+..+..|..++ |+.|+|++|.+....
T Consensus 90 N~l-------~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NAL-------ESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCC-------SCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred Ccc-------ceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 998 433444555555 999999999887443
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=2.8e-09 Score=109.18 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=117.0
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.++......+...+....
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA 101 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHH
Confidence 34456899999999999999877666699999999999999999998853221111234444443211111111110000
Q ss_pred CCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCcchhc-ccCCCcceEEe
Q 005747 207 GLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSLDTLS-TKMDSQKNFSV 283 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-~~~~~~~~~~l 283 (679)
... .+..+++.++|+|+++.. ..+..+...+.....++++|+||....... ........+.+
T Consensus 102 ~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 102 RTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred hhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 000 011146789999999764 233333322222345678888887643221 11112347899
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATALR 334 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L~ 334 (679)
.+++.++..+++...+...... --.+....|++.++|.|..+..+...+.
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999998876532211 1245678899999999987665544443
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=9.7e-11 Score=121.83 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=84.4
Q ss_pred CceEEEEeecccCCCC-----Ccccc-CCCCCCEEEcCCCCCCC--chh-hcCCCCCcEEEcccccccccc-----hhh-
Q 005747 440 EQVRVINVSYMNLLSL-----PSSLG-LLSNLQTLSLYNCKLLD--ITV-IRDLKKLEVLCLRGSDIKRLP-----VEV- 504 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-----p~~~~-~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~i~~lp-----~~i- 504 (679)
++|+.|++++|.++.. ...+. ..++|+.|+|++|.++. +.. ...+++|++|+|++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3566777777766532 11222 22567777777777654 222 234556777777777665321 122
Q ss_pred hcCcCCCEEeccCCcCcc----ccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCC-
Q 005747 505 GELTLLRLLDLRDCRELE----IIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTL- 579 (679)
Q Consensus 505 ~~l~~L~~L~l~~n~~~~----~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~l- 579 (679)
...++|++|+|++|.+.. .++.. +..+++|++|+|++|.+..... ..++..+..+++|++|+|++|.++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 234667777777766322 12222 3556677777777776632110 12344555666777777777776532
Q ss_pred ----CCcc-cccccceeEEEEcCcc
Q 005747 580 ----PRGL-FLEKLERYKILIGGVW 599 (679)
Q Consensus 580 ----p~~~-~l~~L~~L~l~~~~~~ 599 (679)
+..+ ..++|+.|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1222 3456666666665543
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=2.7e-10 Score=118.42 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=102.3
Q ss_pred CceEEEEeecccCCC--CCccccCCCCCCEEEcCCCCCCC--chhh-----cCCCCCcEEEcccccccc-----cchhhh
Q 005747 440 EQVRVINVSYMNLLS--LPSSLGLLSNLQTLSLYNCKLLD--ITVI-----RDLKKLEVLCLRGSDIKR-----LPVEVG 505 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~L~~n~l~~--~~~~-----~~l~~L~~L~L~~n~i~~-----lp~~i~ 505 (679)
.+|+.|+|++|.++. +......+++|+.|+|++|.+++ ...+ ...++|++|+|++|.|+. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 589999999999873 22223346689999999999987 2333 356889999999999874 566678
Q ss_pred cCcCCCEEeccCCcCccc----cChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCC
Q 005747 506 ELTLLRLLDLRDCRELEI----IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 578 (679)
Q Consensus 506 ~l~~L~~L~l~~n~~~~~----lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 578 (679)
.+++|++|+|++|.+... ++.. +...++|++|+|++|.+..... ..++..+...++|++|+|++|.|+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~---~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAA---LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHH---HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHH---HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 899999999999984321 2333 6778899999999999854321 1344556677999999999999874
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=7.4e-08 Score=96.37 Aligned_cols=170 Identities=9% Similarity=0.023 Sum_probs=106.5
Q ss_pred cccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC---C--CeEEEEEcCCCcCHHHHHHH
Q 005747 131 AFESRMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL---F--DQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F--~~~~wv~v~~~~~~~~l~~~ 201 (679)
.+.||++++++|...|. .+..+.+.|+|++|+|||++++.|++....... . -.+++|++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999988775 567788999999999999999999998753211 1 13677888888889999999
Q ss_pred HHHHhCCCCC-ccchhHHHHHHHHHH--HcCCceEEEEecCCCccchhhcCCCCCC-CCCCc--EEEEeecCcch----h
Q 005747 202 IADKLGLKFD-EESESGRARRLHDRL--KKEKRILVILDNIWGNLDLKAAGIPHGD-DHRGC--KVLLTARSLDT----L 271 (679)
Q Consensus 202 i~~~l~~~~~-~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~~~~-~~~gs--~iivTtR~~~v----~ 271 (679)
|++++..... .......+..+...+ ..+++++++||+++....-+.+...+.+ ....+ -||.++...+. +
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 9999954321 111223344444443 2356799999998765321111111100 01122 23333433221 1
Q ss_pred ccc---CCCcceEEecCCChHHHHHHHHHHhC
Q 005747 272 STK---MDSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 272 ~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
... .-....+.+.+++.+|-.+++.+++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 100 11125789999999999999988764
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=1.9e-08 Score=105.52 Aligned_cols=210 Identities=11% Similarity=0.118 Sum_probs=124.9
Q ss_pred ceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEecc
Q 005747 441 QVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLR 516 (679)
Q Consensus 441 ~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~ 516 (679)
+|+.+.+.+ .+..++ ..|.+|++|+.+++.+|.++.+ ..|. ..+|+.+.|..+ ++.++. .+.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 466666664 555554 3567777777777777776663 2333 467777777643 666644 45667777777776
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC-----CCCCcc--cccccc
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-----TLPRGL--FLEKLE 589 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~lp~~~--~l~~L~ 589 (679)
.+ +..++..+|.+ .+|+.+.+.+ .+ .......|.++++|+.+.+..|.+. .++... .+++|+
T Consensus 235 ~~--l~~I~~~aF~~-~~L~~i~lp~-~i-------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 235 EN--VSTIGQEAFRE-SGITTVKLPN-GV-------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TT--CCEECTTTTTT-CCCSEEEEET-TC-------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred CC--ccCcccccccc-CCccEEEeCC-Cc-------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 63 45666666666 6677777743 34 2334556777777777777766554 344444 566677
Q ss_pred eeEEEEcCcccccc----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCC-CCccEEE
Q 005747 590 RYKILIGGVWGWEY----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGP-SQLKHLY 664 (679)
Q Consensus 590 ~L~l~~~~~~~~~~----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~-~~L~~L~ 664 (679)
.+.+. +++..+.. ....++.+.+.. +........+..+ +|+.|++.+|. +..++... +.++ .+++.|.
T Consensus 304 ~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~---~~~l~~~~-F~~~~~~l~~l~ 376 (401)
T 4fdw_A 304 RFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTT---PPQVFEKV-WYGFPDDITVIR 376 (401)
T ss_dssp EECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSS---CCBCCCSS-CCCSCTTCCEEE
T ss_pred eEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCC---Cccccccc-ccCCCCCccEEE
Confidence 66664 22222211 123455555532 2233344445556 89999999886 33333333 3455 4788999
Q ss_pred EecCcCc
Q 005747 665 IRGSHLT 671 (679)
Q Consensus 665 l~~n~l~ 671 (679)
+..+.+.
T Consensus 377 vp~~~~~ 383 (401)
T 4fdw_A 377 VPAESVE 383 (401)
T ss_dssp ECGGGHH
T ss_pred eCHHHHH
Confidence 8877654
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.81 E-value=3.7e-08 Score=100.31 Aligned_cols=187 Identities=12% Similarity=0.103 Sum_probs=116.2
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH---HHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR---KIQREIA 203 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~---~l~~~i~ 203 (679)
.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+...... +......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHH
Confidence 3456789999999999999887666569999999999999999999885322111123344544422211 1111111
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcchh-cccCCCcce
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLDTL-STKMDSQKN 280 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~ 280 (679)
+... +..+++.++|+|++.... ....+...+.....++++|+||....-. .........
T Consensus 94 ~~~~------------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 94 RTAP------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp HSCC------------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred hcCC------------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 0000 012457899999987642 2344444444444567888888754322 111223458
Q ss_pred EEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 005747 281 FSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATA 332 (679)
Q Consensus 281 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~ 332 (679)
+++.+++.++..+++...+......- -.+....+++.++|.+..+......
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999988765322211 1456778889999998765544433
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=9.6e-08 Score=99.64 Aligned_cols=181 Identities=14% Similarity=0.200 Sum_probs=111.4
Q ss_pred cccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC-------------------eEEEEE
Q 005747 129 YEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFD-------------------QVVFSE 188 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~wv~ 188 (679)
...++|++..++.+..++..+. .+.+.|+|+.|+||||+|+.+++.......+. ..+.+.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 4568999999999999987554 46789999999999999999998765322110 011111
Q ss_pred cCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHH----cCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEE
Q 005747 189 VSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLK----KEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVL 262 (679)
Q Consensus 189 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ii 262 (679)
.+.. ...+....+.+.+. .+++.++|+||+.... ....+...+.....+..+|
T Consensus 95 ~~~~---------------------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~I 153 (373)
T 1jr3_A 95 AASR---------------------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (373)
T ss_dssp TTCS---------------------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEE
T ss_pred cccc---------------------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEE
Confidence 1110 00111222333322 2467899999996542 2333332222233456777
Q ss_pred EeecCcchh-cccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 005747 263 LTARSLDTL-STKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVAT 331 (679)
Q Consensus 263 vTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~ 331 (679)
++|....-. .........+++.+++.++..+++...+....... -.+....|++.++|.|..+..+..
T Consensus 154 l~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred EEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 777653321 11122346899999999999999987664211111 135677899999999987766543
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=9.4e-08 Score=97.62 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=109.6
Q ss_pred CcccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITDALK-----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
....++|++..++.+..++. ....+.+.|+|++|+|||++|+.+++.... ...+++.+......++...+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHHHH
Confidence 44678999999998888775 234467889999999999999999987642 23455554433333222211
Q ss_pred HHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCC--------CC----------CCCCcEEE
Q 005747 203 ADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPH--------GD----------DHRGCKVL 262 (679)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~--------~~----------~~~gs~ii 262 (679)
.. . ..++.+|++|++.... ....+...+ .. ..++.++|
T Consensus 85 ----~~----------------~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 85 ----AN----------------S--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----TT----------------T--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----HH----------------h--ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 10 0 1346788899986642 111111000 00 01245677
Q ss_pred EeecCcchhcccC-C-CcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 005747 263 LTARSLDTLSTKM-D-SQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATAL 333 (679)
Q Consensus 263 vTtR~~~v~~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L 333 (679)
.||.......... . ....+.+.+++.++...++...+...... --.+....+++.++|.|-.+..+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7776533221111 1 13589999999999999998877532211 114667889999999998877666554
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.63 E-value=9.1e-08 Score=89.31 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=86.4
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCC-----CCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDK-----LFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
...++||+++++++.+++.....+.+.|+|++|+|||++|+.+++...... .....++++++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA--------- 91 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT---------
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc---------
Confidence 456889999999999999877777889999999999999999998864311 112345554322100
Q ss_pred HHhCCCCCccchhHHHHHHHHHH-HcCCceEEEEecCCCcc---------c-hhhcCCCCCCCCCCcEEEEeecCcchh-
Q 005747 204 DKLGLKFDEESESGRARRLHDRL-KKEKRILVILDNIWGNL---------D-LKAAGIPHGDDHRGCKVLLTARSLDTL- 271 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~iivTtR~~~v~- 271 (679)
+.. ...........+...+ ..+++.+||+||++... . ...+...+ . ..+..+|.||......
T Consensus 92 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~-~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 92 ---GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-A-RGELHCVGATTLDEYRQ 165 (195)
T ss_dssp ---TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-H-TTSCCEEEEECHHHHHH
T ss_pred ---cCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-c-cCCeEEEEeCCHHHHHH
Confidence 000 0000111222333333 23567899999996542 1 11111111 1 1234567766654311
Q ss_pred -----cccCCCcceEEecCCChHHHHHHH
Q 005747 272 -----STKMDSQKNFSVSFLKEEEAWSLF 295 (679)
Q Consensus 272 -----~~~~~~~~~~~l~~L~~~e~~~Lf 295 (679)
.........+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111112236889999988876553
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.57 E-value=6.5e-07 Score=89.46 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=106.1
Q ss_pred CCCcccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 126 NKDYEAFESRMSILNEITDALKN-------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
......++|.++.++++.+++.. ...+.+.|+|++|+|||++|+.+++..... .+.+..+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHH
Confidence 34567789999999999887742 345679999999999999999999886432 333443322
Q ss_pred cCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc----------------chhhcCCCCC--C
Q 005747 193 QDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL----------------DLKAAGIPHG--D 254 (679)
Q Consensus 193 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~ 254 (679)
... .. .........+.......++.+|++|++.... .+..+...+. .
T Consensus 88 ~~~--------------~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VKK--------------FI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CCC--------------ST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHh--------------cc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 110 00 0111223334444444567899999985420 1111111110 1
Q ss_pred CCCCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHH
Q 005747 255 DHRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVT 328 (679)
Q Consensus 255 ~~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~ 328 (679)
...+..||.||......... ......+.+..++.++..+++...+.......+ .....+++.+.|. |-.+..
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHH
Confidence 22356677777754333211 122347899999999999999988764322111 1235677777774 434443
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.55 E-value=2.9e-06 Score=83.49 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=101.9
Q ss_pred CcccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 128 DYEAFESRMSILNEITDALK---N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
....++|.+..++.+.+++. . ...+.+.|+|++|+|||++|+.+++..... .+.+..+...+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh
Confidence 34567788887777765542 1 234568899999999999999999976432 344555442110
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-----------------chhhcCCCCCC--CC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-----------------DLKAAGIPHGD--DH 256 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~ 256 (679)
... ........+........+.+|++|+++... .+..+...+.. ..
T Consensus 79 --------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 --------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp --------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred --------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 000 111222334444444567899999997531 01111111111 12
Q ss_pred CCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 005747 257 RGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTV 329 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~ 329 (679)
.+..||.||.....+.... .....+.+...+.++..+++...+...............+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 3456666666543221111 2235788999999999999988765322222223345778888888754 44433
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=3.2e-08 Score=101.90 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=93.7
Q ss_pred CceEEEEeecccCC----------CCCccccCCCCCCEEEcCCCCCCCchhhcCCCCCcEEEcccccccc-cchhhh--c
Q 005747 440 EQVRVINVSYMNLL----------SLPSSLGLLSNLQTLSLYNCKLLDITVIRDLKKLEVLCLRGSDIKR-LPVEVG--E 506 (679)
Q Consensus 440 ~~L~~L~l~~n~l~----------~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~i~~-lp~~i~--~ 506 (679)
++|+.|.+.++... .++..+..+++|+.|+|++|.-..++.+ .+++|+.|+|..|.++. ....+. .
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~ 217 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSD 217 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHcc
Confidence 57888888654321 2444567788999999988742223334 37899999998887762 222333 7
Q ss_pred CcCCCEEeccCC--cCccc-----cChhhh--cCCcccceeecCCCCCCcchhhhcccccccc---cccCCCcEEEEEee
Q 005747 507 LTLLRLLDLRDC--RELEI-----IPPNVL--SKLSHLEELYMGPRSFDKWEVEVEGVKNASL---HELKHLISLELQIQ 574 (679)
Q Consensus 507 l~~L~~L~l~~n--~~~~~-----lp~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~n 574 (679)
+++|++|+|+.+ ...+. +... + ..+++|++|++.+|.+.. ..+..+ ..+++|++|+|++|
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i~~-------~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEEQN-------VVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTTHH-------HHHHHHHHCSSGGGCSEEECCSS
T ss_pred CCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCCch-------HHHHHHHhCccCCCCCEEECCCC
Confidence 889999988632 11111 1111 2 247899999998887732 111122 24678999999988
Q ss_pred cCCC-----CCCcc-cccccceeEEEEcC
Q 005747 575 DVNT-----LPRGL-FLEKLERYKILIGG 597 (679)
Q Consensus 575 ~l~~-----lp~~~-~l~~L~~L~l~~~~ 597 (679)
.++. ++..+ .+++|+.|+++.|.
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 8874 34443 56778888775543
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=1.2e-07 Score=97.72 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=95.0
Q ss_pred CceEEEEeecccCCCCCccccCCCCCCEEEcCCCCCCC--chhhc--CCCCCcEEEccc--cc------ccccchhh--h
Q 005747 440 EQVRVINVSYMNLLSLPSSLGLLSNLQTLSLYNCKLLD--ITVIR--DLKKLEVLCLRG--SD------IKRLPVEV--G 505 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~--~~~~~--~l~~L~~L~L~~--n~------i~~lp~~i--~ 505 (679)
++|+.|++++|.-..+++ + .+++|+.|+|..|.+.. +..+. .+++|++|+|+. |. +..+...+ .
T Consensus 172 P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 789999999884234554 4 38999999999998865 34454 799999999863 21 22333333 3
Q ss_pred cCcCCCEEeccCCcCccccChhhh--cCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 506 ELTLLRLLDLRDCRELEIIPPNVL--SKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 506 ~l~~L~~L~l~~n~~~~~lp~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
.+++|++|+|++|.+....+..++ ..+++|++|+|+.|.+..... ..++..+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~---~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA---RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH---HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH---HHHHhhcccCCcceEEECCCCcCC
Confidence 589999999999885543333322 257899999999998843211 134556678899999999999876
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.48 E-value=4.1e-06 Score=82.97 Aligned_cols=195 Identities=15% Similarity=0.167 Sum_probs=101.6
Q ss_pred cccchHHHHHHHHH-------Hhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 131 AFESRMSILNEITD-------ALK---NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 131 ~~~gr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
.++|....++++++ .+. ....+.+.|+|++|+|||++|+.+++..... .+.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~-----~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP-----FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS-----EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEeCHHHh-------
Confidence 45565555554444 332 4456789999999999999999999975321 2223322210
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc-----------c-chhhc---CCCCCCCCCCcEEEEee
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN-----------L-DLKAA---GIPHGDDHRGCKVLLTA 265 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------~-~~~~l---~~~~~~~~~gs~iivTt 265 (679)
++. ...........+.......++.+|++|++... . .+..+ ............||.||
T Consensus 102 -----~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 010 00000112223333333356789999998542 0 11222 12111122334566677
Q ss_pred cCcchhcc---cCCCcceEEecCCCh-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCC------ChHHHHHHHHHhhc
Q 005747 266 RSLDTLST---KMDSQKNFSVSFLKE-EEAWSLFKKMAGDYVEGNELKEVARDVAKECAG------LPVAIVTVATALRD 335 (679)
Q Consensus 266 R~~~v~~~---~~~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~g------lPlai~~~~~~L~~ 335 (679)
........ ...-...+.+.++++ ++...++.... . . -.+....|++.+.| ++-++..+-.....
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 66543321 111245788999988 66666665532 1 1 13556778888887 34444433333222
Q ss_pred CCChhHHHHHHHHhcC
Q 005747 336 NNSLFDWKDALEQLRR 351 (679)
Q Consensus 336 ~~~~~~w~~~l~~l~~ 351 (679)
.....+..+++.+..
T Consensus 249 -~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 249 -DPEYRVRKFLALLRE 263 (272)
T ss_dssp -CGGGHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHH
Confidence 345566666655533
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=2e-07 Score=90.57 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=103.5
Q ss_pred Ccccccch---HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHH
Q 005747 128 DYEAFESR---MSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIAD 204 (679)
Q Consensus 128 ~~~~~~gr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 204 (679)
....|+|+ +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|++++...+. +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 34456653 4667777777666567889999999999999999999886543 334667776542210 00
Q ss_pred HhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc----hhhcCCCCCC-CCCC-cEEEEeecCcch-h----c-
Q 005747 205 KLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD----LKAAGIPHGD-DHRG-CKVLLTARSLDT-L----S- 272 (679)
Q Consensus 205 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~iivTtR~~~v-~----~- 272 (679)
.....+ .++.+||+||++.... ...+...+.. ...+ .++|+||+...- . .
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 000011 3467999999865421 1112111100 0112 248888774321 0 0
Q ss_pred --ccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 273 --TKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 273 --~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
........+++.+++.++..+++...+...... --.+....+++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHH
Confidence 001112689999999999999998876421111 114667788899999876655443
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.7e-07 Score=94.41 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=112.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC-CeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLF-DQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......+ ..+..++.+.......+...+ ..
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 112 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV-KN 112 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH-HH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH-HH
Confidence 3456788999999999999987655558999999999999999999875321001 123445554433333322221 11
Q ss_pred hC-CCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcchh-cccCCCcceE
Q 005747 206 LG-LKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLDTL-STKMDSQKNF 281 (679)
Q Consensus 206 l~-~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~~~~~~~ 281 (679)
+. ......... .......+++-+|++|++.... ....+...+.......++|++|....-. .........+
T Consensus 113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11 000000000 0000011345699999986542 2222222222223456777777543321 1111123478
Q ss_pred EecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 282 SVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 282 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
.+.+++.++....+...+......- -.+....|++.++|.|-.+..+.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999988764322111 14677889999999998655443
No 175
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=8.6e-06 Score=83.95 Aligned_cols=183 Identities=10% Similarity=0.097 Sum_probs=105.5
Q ss_pred CCcccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....++|.+..++.+.+++. ....+.|.|+|++|+|||++|+.+++.... ..+.++++.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 345678899999999888763 234578999999999999999999987632 234555543211
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-------------chhhcCCCC----CCCCC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-------------DLKAAGIPH----GDDHR 257 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~----~~~~~ 257 (679)
. ... ........+.......++.+|+||++.... .+..+...+ .....
T Consensus 156 ~--------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 K--------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp S--------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred c--------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 000 011222333333444567999999984320 011111111 11123
Q ss_pred CcEEEEeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHHHH
Q 005747 258 GCKVLLTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVTVA 330 (679)
Q Consensus 258 gs~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~~~ 330 (679)
+..||.||.....+.. .......+.+...+.++..+++...+......- ..+....|++.+.|+ +-.+..+.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4456656654322211 112235778899999999999887764321111 135677888999984 44555443
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=6.8e-07 Score=97.07 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=110.7
Q ss_pred CCCcccccchHHHHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE
Q 005747 126 NKDYEAFESRMSILNEITDALKN-----------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE 188 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (679)
+.....++|++..++++.+|+.. +..+.+.|+|++|+||||+|+.+++... ..++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEe
Confidence 34556789999999999999864 1347899999999999999999999873 1345666
Q ss_pred cCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHH-HHcCCceEEEEecCCCccc-----hhhcCCCCCCCCCCcEEE
Q 005747 189 VSESQDIRKIQREIADKLGLKFDEESESGRARRLHDR-LKKEKRILVILDNIWGNLD-----LKAAGIPHGDDHRGCKVL 262 (679)
Q Consensus 189 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~ii 262 (679)
.+.......+ ...+.......... .......+. ...+++.+|++|++..... +..+...+. ..+..||
T Consensus 110 ~s~~~~~~~~-~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iI 183 (516)
T 1sxj_A 110 ASDVRSKTLL-NAGVKNALDNMSVV---GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLI 183 (516)
T ss_dssp TTSCCCHHHH-HHTGGGGTTBCCST---TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEE
T ss_pred CCCcchHHHH-HHHHHHHhccccHH---HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEE
Confidence 6665444322 22222111100000 000000000 0125678999999965421 122211111 1233466
Q ss_pred EeecCcc--hhcccCCCcceEEecCCChHHHHHHHHHHhCC--CCCCccHHHHHHHHHHHcCC-ChHHHHHHHHH
Q 005747 263 LTARSLD--TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGD--YVEGNELKEVARDVAKECAG-LPVAIVTVATA 332 (679)
Q Consensus 263 vTtR~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~I~~~~~g-lPlai~~~~~~ 332 (679)
+++.... ...........+.+.+++.++..+++...+.. .... .+....|++.++| ++.++..+..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6555422 11222233458899999999999998876642 1112 2346778899999 55555555433
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.40 E-value=2e-05 Score=79.92 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=106.2
Q ss_pred CCcccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....+.|.++.++.|.+.+. ....+-|.++|++|+|||++|+.+++..... ..+.+..+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh
Confidence 445678898888888877653 1234679999999999999999999986221 223444443211
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc-------------hhhcCC---CCCCCCCC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD-------------LKAAGI---PHGDDHRG 258 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~---~~~~~~~g 258 (679)
.... ........+.......++.+|++|++..... ...+.. .+.....+
T Consensus 85 --------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0111 1122334444444446789999999865410 011110 11111234
Q ss_pred cEEEEeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHHHH
Q 005747 259 CKVLLTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVTVA 330 (679)
Q Consensus 259 s~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~~~ 330 (679)
..||.||.....+.. .......+.+...+.++..+++........... -......|++.+.|. +-.+..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455556654332211 112345788999999999999988775432211 134567788899887 43344443
No 178
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.6e-07 Score=87.23 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=48.4
Q ss_pred cCCCCCCEEEcCCC-CCCC--c----hhhcCCCCCcEEEcccccccc-----cchhhhcCcCCCEEeccCCcCccc----
Q 005747 460 GLLSNLQTLSLYNC-KLLD--I----TVIRDLKKLEVLCLRGSDIKR-----LPVEVGELTLLRLLDLRDCRELEI---- 523 (679)
Q Consensus 460 ~~l~~L~~L~L~~n-~l~~--~----~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~l~~n~~~~~---- 523 (679)
...++|+.|+|++| .+.. . ..+...++|++|+|++|.|.. +...+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34445555555555 4433 1 223344455555555554441 233344444555555555542211
Q ss_pred cChhhhcCCcccceeec--CCCCCCcchhhhcccccccccccCCCcEEEEEeecC
Q 005747 524 IPPNVLSKLSHLEELYM--GPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV 576 (679)
Q Consensus 524 lp~~~~~~l~~L~~L~l--~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 576 (679)
+... +...++|++|++ ++|.+..... ..+...+...++|++|++++|.+
T Consensus 113 l~~~-L~~n~~L~~L~L~~~~N~i~~~g~---~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEA-LQSNTSLIELRIDNQSQPLGNNVE---MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHG-GGGCSSCCEEECCCCSSCCCHHHH---HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHH-HHhCCCceEEEecCCCCCCCHHHH---HHHHHHHHhCCCcCEEeccCCCC
Confidence 1111 334445555555 4455422110 01222333445555555555544
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.39 E-value=4.1e-06 Score=88.68 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=106.0
Q ss_pred CCcccccchHHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 127 KDYEAFESRMSIL---NEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 127 ~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.....++|.+..+ ..+...+..+..+.+.++|++|+||||+|+.+++..... | ..+.... ....++ +.++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~i-r~~~ 95 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKEI-REAI 95 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHHH-HHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHHH-HHHH
Confidence 4456788999888 778888887777889999999999999999999886432 2 1222221 222222 1111
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEee-cCcc--hhcccCCCc
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTA-RSLD--TLSTKMDSQ 278 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~--v~~~~~~~~ 278 (679)
. ........+++.+|++|++.... ..+.+...+.. ....+|.+| .+.. +........
T Consensus 96 ~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 96 E----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp H----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred H----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCce
Confidence 1 11111123678999999997542 22222222211 123444444 3321 111112334
Q ss_pred ceEEecCCChHHHHHHHHHHhCCC------CCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 005747 279 KNFSVSFLKEEEAWSLFKKMAGDY------VEGNELKEVARDVAKECAGLPVAIVTVAT 331 (679)
Q Consensus 279 ~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~~~~~~~~I~~~~~glPlai~~~~~ 331 (679)
.++.+.+++.++...++.+.+... ....--.+....+++.++|.+-.+..+..
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 588999999999999998876431 11111246677888889998765554443
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.37 E-value=7.8e-06 Score=83.05 Aligned_cols=184 Identities=19% Similarity=0.204 Sum_probs=108.2
Q ss_pred CCCCcccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 125 PNKDYEAFESRMSILNEITDALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
|......++|.++.++.|.+++. ....+-+.++|++|+|||++|+.+++..... .+.++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~- 86 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSD- 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHH-
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHH-
Confidence 34456778999999999988772 1124578999999999999999999886432 23333321
Q ss_pred cCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc-------------hhhcC---CCCCCCC
Q 005747 193 QDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD-------------LKAAG---IPHGDDH 256 (679)
Q Consensus 193 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~~~~~~ 256 (679)
+.. ... .........+.......++.+|++|++..... ...+. ..+....
T Consensus 87 -----l~~--------~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 -----LVS--------KWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp -----HHT--------TTG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred -----Hhh--------ccc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 100 000 01122334444444556678999999864311 11111 1111223
Q ss_pred CCcEEEEeecCcchhccc--CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 005747 257 RGCKVLLTARSLDTLSTK--MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVTV 329 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~~ 329 (679)
.+..||.||.....+... ......+.+...+.++-.+++...+........ ......|++.+.|. +-.+..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 455666677653332111 123357788999999999999998864332211 34567788888884 4344433
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=7.8e-06 Score=83.77 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=104.7
Q ss_pred CCcccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALK-----NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.....++|++..++.+..++. ....+.|.|+|++|+|||++|+.+++..... .+.++++.......+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~~-- 98 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDLA-- 98 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHHH--
Confidence 345678999999999988886 2345678999999999999999998875432 2334433222211111
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCC------------------CCCCCCCcEE
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIP------------------HGDDHRGCKV 261 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~------------------~~~~~~gs~i 261 (679)
..... ..+..+|++|++.... ....+... .....++.++
T Consensus 99 -------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 99 -------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111 1356788999986542 11111000 0011123566
Q ss_pred EEeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 005747 262 LLTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVA 330 (679)
Q Consensus 262 ivTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~ 330 (679)
|.+|........ .......+.+.+++.++...++...+..... .--.+....+++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666665332211 1122368999999999999999887653221 1124667788889999985554443
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.5e-06 Score=89.70 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=107.2
Q ss_pred CCcccccchHHHHHHHHHHh-cCCCccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCe------------------
Q 005747 127 KDYEAFESRMSILNEITDAL-KNGDVNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQ------------------ 183 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~------------------ 183 (679)
.....++|++..++.+..++ ..+..+.+.|+|+.|+||||+|+.++....... .++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 34567889999999999998 655544499999999999999999998532111 0110
Q ss_pred --EEEEEcCCCc-CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc--hhhcCCCCCCCCCC
Q 005747 184 --VVFSEVSESQ-DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD--LKAAGIPHGDDHRG 258 (679)
Q Consensus 184 --~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~g 258 (679)
.+.+..+... ......+++++.+.....-.. .. . ...+. +++-++|+|++..... ...+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~-ls~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF---QD-S-KDGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccccc---cc-c-ccccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1112111110 000012223322211100000 00 0 00011 3567999999976421 22222212112346
Q ss_pred cEEEEeecCcc-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 005747 259 CKVLLTARSLD-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVAT 331 (679)
Q Consensus 259 s~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~ 331 (679)
..+|++|.... +..........+++.+++.++..+.+...+......-.-.+....|++.++|.+-.+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77888887633 22222233468999999999999999887642111100025667888999998866554443
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.35 E-value=1.9e-05 Score=82.42 Aligned_cols=183 Identities=15% Similarity=0.116 Sum_probs=105.0
Q ss_pred CCCcccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 126 NKDYEAFESRMSILNEITDALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
+.....++|.+..++.+.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3456678999999999998873 123468999999999999999999887542 23444443322
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-------------chhhcCCCC---C-CCC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-------------DLKAAGIPH---G-DDH 256 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~---~-~~~ 256 (679)
... . . ........+........+.+|+||++.... ....+...+ . ...
T Consensus 186 ~~~---------~-----g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SKY---------V-----G-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred ccc---------c-----c-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 110 0 0 011223334444444566899999995430 001111000 0 012
Q ss_pred CCcEEEEeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 005747 257 RGCKVLLTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTV 329 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~ 329 (679)
....||.||.....+.. .......+.+...+.++..+++...+......- ..+....|++.+.|..- ++..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 23455556654332211 112234688999999999999988875432211 13466788999988654 44444
No 184
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=2.1e-07 Score=86.29 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=84.5
Q ss_pred CceEEEEeecc-cCCC-----CCccccCCCCCCEEEcCCCCCCC--c----hhhcCCCCCcEEEcccccccc-----cch
Q 005747 440 EQVRVINVSYM-NLLS-----LPSSLGLLSNLQTLSLYNCKLLD--I----TVIRDLKKLEVLCLRGSDIKR-----LPV 502 (679)
Q Consensus 440 ~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~L~~n~i~~-----lp~ 502 (679)
++|+.|+|++| .+.. +...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 68999999999 8863 45567788999999999999986 2 345667899999999999983 566
Q ss_pred hhhcCcCCCEEec--cCCcCccc----cChhhhcCCcccceeecCCCCCC
Q 005747 503 EVGELTLLRLLDL--RDCRELEI----IPPNVLSKLSHLEELYMGPRSFD 546 (679)
Q Consensus 503 ~i~~l~~L~~L~l--~~n~~~~~----lp~~~~~~l~~L~~L~l~~n~~~ 546 (679)
.+...++|++|+| ++|.+... +... +...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 7888899999999 77874332 2222 556689999999999873
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.33 E-value=2.3e-06 Score=87.21 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=102.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 127 KDYEAFESRMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.....++|+++.++.+.+++..+. .+++.+.|++|+|||++|+.+++.... .+++++.+.. ....+ +.++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~i-~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDFV-RGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHHH-HTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHHH-HHHHHH
Confidence 445678999999999999998655 467788888999999999999987632 2455665442 22222 221111
Q ss_pred hCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc---chhhcCCCCCCCCCCcEEEEeecCcchhc-ccCCCcceE
Q 005747 206 LGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL---DLKAAGIPHGDDHRGCKVLLTARSLDTLS-TKMDSQKNF 281 (679)
Q Consensus 206 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtR~~~v~~-~~~~~~~~~ 281 (679)
+..... ..+++.++++|++.... ....+...+.....+.++|+||....-.. ........+
T Consensus 96 ~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 96 FASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred HHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 100000 01367899999997653 22222222211224567888887643221 011112478
Q ss_pred EecCCChHHHHHHHHH-------HhCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 005747 282 SVSFLKEEEAWSLFKK-------MAGDYVEGNELKEVARDVAKECAGLPVAIV 327 (679)
Q Consensus 282 ~l~~L~~~e~~~Lf~~-------~~~~~~~~~~~~~~~~~I~~~~~glPlai~ 327 (679)
++.+++.++-.+++.. .+......-.-.+....|++.++|.+-.+.
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 9999998885443322 222111111112567778888988665433
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=5.3e-06 Score=85.05 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=105.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
.....++|.+..++.+..++..++.+.+.++|+.|+||||+|+.++........-..+..++.+.......+.. ++..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~ 100 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QIKDF 100 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HHHHH
Confidence 34456789999999999998877655589999999999999999998854321001233344444333332221 11111
Q ss_pred CCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcceEEe
Q 005747 207 GLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKNFSV 283 (679)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l 283 (679)
..... ...+.+-++|+|++.... ....+...+......+++|++|.... +..........+.+
T Consensus 101 ~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 101 ASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 00000 001236789999986432 22222211111234566777775432 21111222357899
Q ss_pred cCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHH
Q 005747 284 SFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAI 326 (679)
Q Consensus 284 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai 326 (679)
.++++++..+.+...+......- -.+..+.|++.++|.+--+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 99999999988887663211111 1356777888999987643
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.30 E-value=4.9e-05 Score=76.17 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=104.0
Q ss_pred CCcccccchHHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDALKN------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... ..+.++++....
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 4456789999999998887631 23568999999999999999999987642 233444443211
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc-------------hhhcC---CCCCC--CC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD-------------LKAAG---IPHGD--DH 256 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~~~~--~~ 256 (679)
... .........+.......++.+|++|++..... ...+. ..++. .+
T Consensus 93 --------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------ccc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 01122233333444445678999999854310 00010 01111 12
Q ss_pred CCcEEEEeecCcchhccc--CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 005747 257 RGCKVLLTARSLDTLSTK--MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPV-AIVTV 329 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPl-ai~~~ 329 (679)
.+..||.||.....+... ......+.+...+.++...++...+......-. .+....+++.+.|.+- ++..+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 345566677653322110 012356778888888888888876643221111 3456788899999875 44443
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.29 E-value=1.5e-06 Score=87.91 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=85.6
Q ss_pred cccchHHHHHHHHHHhc---------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCC--eEEEEEcCCCc
Q 005747 131 AFESRMSILNEITDALK---------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFD--QVVFSEVSESQ 193 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~ 193 (679)
.++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 46788888777776543 23445799999999999999999988765432221 2333332221
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc-----------cchhhcCCCCCCCCCCcEEE
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN-----------LDLKAAGIPHGDDHRGCKVL 262 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ii 262 (679)
........ ... +...+...+.-+|++|++... .....+...+.....+..+|
T Consensus 111 -------------~~~~~g~~-~~~---~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 111 -------------VGQYIGHT-APK---TKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -------------CCSSTTCH-HHH---HHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -------------hhhccccc-HHH---HHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 00111111 111 122222223569999999732 12222222222233456777
Q ss_pred EeecCcchh-------cccCCCcceEEecCCChHHHHHHHHHHhC
Q 005747 263 LTARSLDTL-------STKMDSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 263 vTtR~~~v~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
.||.....- .........+.+.+++.++..+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 777542210 00011236899999999999999987764
No 189
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=7.8e-06 Score=84.87 Aligned_cols=195 Identities=11% Similarity=0.088 Sum_probs=102.2
Q ss_pred cccccchHHHHHH---HHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc----CCCcCHHHHH
Q 005747 129 YEAFESRMSILNE---ITDALKNGDV--NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV----SESQDIRKIQ 199 (679)
Q Consensus 129 ~~~~~gr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~~~~~~l~ 199 (679)
...++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++.......| +.+.. +......+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5678999988766 4555554443 589999999999999999999987643222 22222 2223344444
Q ss_pred HHHHHHh-CCC---------------------------CCc---cchhH---HHHHHHHH-HHcCC----ceEEEEecCC
Q 005747 200 REIADKL-GLK---------------------------FDE---ESESG---RARRLHDR-LKKEK----RILVILDNIW 240 (679)
Q Consensus 200 ~~i~~~l-~~~---------------------------~~~---~~~~~---~~~~l~~~-l~~~k----~~LlVlDdv~ 240 (679)
.+..+.. +.. ... ..... ........ ...++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4433331 100 000 00001 11111111 11233 3599999997
Q ss_pred Ccc--chhhcCCCCCCCCCCcEEEEeecC------------c-chhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCC
Q 005747 241 GNL--DLKAAGIPHGDDHRGCKVLLTARS------------L-DTLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEG 305 (679)
Q Consensus 241 ~~~--~~~~l~~~~~~~~~gs~iivTtR~------------~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 305 (679)
... ....+...+..... ..++++|.. . .+..........+.+.+++.++..+++...+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 642 22222222222112 234444431 0 0101111223458999999999999999876532111
Q ss_pred ccHHHHHHHHHHHcC-CChHHHHH
Q 005747 306 NELKEVARDVAKECA-GLPVAIVT 328 (679)
Q Consensus 306 ~~~~~~~~~I~~~~~-glPlai~~ 328 (679)
--.+....|++.+. |.|-.+..
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHH
Confidence 12456778888887 77654443
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.26 E-value=1.6e-05 Score=81.18 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCC--------------------CCCeEEEEEcC---
Q 005747 135 RMSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDK--------------------LFDQVVFSEVS--- 190 (679)
Q Consensus 135 r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v~--- 190 (679)
.++..+.+...+..++ .+.+.++|+.|+|||++|+.+++...... +++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 4556777777777665 46799999999999999999998754321 122 2333332
Q ss_pred CCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCc
Q 005747 191 ESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSL 268 (679)
Q Consensus 191 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~ 268 (679)
....+.++ +++.+.+..... .+++-++|+|+++... ....+...+.....++.+|++|.+.
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~~----------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHAR----------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCCT----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHHH-HHHHHHHhhccc----------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 22233222 233333321100 2567899999997642 2333333333334567777777664
Q ss_pred c-hhcccCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 269 D-TLSTKMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 269 ~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
+ +..........+++.++++++..+.+.+... . -.+....+++.++|.|..+..
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHH
Confidence 3 3332233456899999999999999988751 1 134567789999999976544
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.24 E-value=4.9e-05 Score=80.62 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=105.4
Q ss_pred CCCcccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 126 NKDYEAFESRMSILNEITDALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
......++|.+..++.|.+.+. ....+-|.++|++|+|||++|+.+++..... ..+.++.+.-.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~----~~~~v~~~~l~ 205 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV 205 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS----EEEEECCC---
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC----CEEEEeHHHHH
Confidence 3445678899999998888762 1234689999999999999999999986211 12333333211
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-------------chhhcCCCCCC---CCC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-------------DLKAAGIPHGD---DHR 257 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~ 257 (679)
.. ..+. . ......+.......++.+|++|++.... ....+...+.. ...
T Consensus 206 ------~~---~~g~-----~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 206 ------SK---WLGE-----S-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp --------------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ------hh---hcch-----H-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 10 0111 0 1123334444444678999999997541 01122222211 234
Q ss_pred CcEEEEeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 005747 258 GCKVLLTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVTV 329 (679)
Q Consensus 258 gs~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~~ 329 (679)
+..||.||.....+.. .......+.+...+.++...+|...+....... -......|++.+.|. +-.|..+
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 5566667765433211 112335788888899999999988875432111 134567788899885 4344433
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.20 E-value=2.3e-05 Score=80.53 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=104.0
Q ss_pred CCcccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDALK------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....++|.+..++.|.+++. ....+-|.++|++|+|||++|+.+++..... .+.+..+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH----
Confidence 345678899988888887762 1123458899999999999999999987422 2333332
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc-------------hhhcCCC---CCCCCCC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD-------------LKAAGIP---HGDDHRG 258 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~g 258 (679)
++.. .... ........+.......++.+|++|++..... ...+... +.....+
T Consensus 119 --~l~~--------~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLVS--------KWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHHS--------CC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHhh--------hhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 0001 1122333444444446789999999864320 1111111 1111234
Q ss_pred cEEEEeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 005747 259 CKVLLTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIVTV 329 (679)
Q Consensus 259 s~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~~~ 329 (679)
..||.||.....+.. .......+.+...+.++..+++............ ......|++.+.|. +-.|..+
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 556666664432211 1133457889999999999999988764322111 34567788899885 4344443
No 193
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.9e-05 Score=77.31 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=103.8
Q ss_pred CCcccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
....++.|-++.+++|.+.+. -...+-|.++|++|.|||.+|+++++..... .+.|..+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 345567788888887776653 1234678899999999999999999987643 3444444321
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc----------c------hhhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL----------D------LKAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~l~~~~~--~~ 255 (679)
+ .+.. .....+..+........+.+|++|+++... . ...+...+. ..
T Consensus 220 s--------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 220 Q--------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp C--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred c--------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 1 1111 112234445555555678999999986421 0 111111111 12
Q ss_pred CCCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
..+-.||.||...+.+... ..-...+.+...+.++-.++|+..........+. -..++++.+.|+-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 3344566677655444221 2345789999999999999998877643222211 1355777888754
No 194
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=2.5e-06 Score=83.15 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEE
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVF 186 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 186 (679)
--|.|-+.....|+.|...+-+... ..|..+.|
T Consensus 25 ~kv~I~~g~ky~k~~ll~~i~~~~~--~~f~p~~~ 57 (267)
T 3rw6_A 25 FKITIPYGRKYDKAWLLSMIQSKCS--VPFTPIEF 57 (267)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHTCS--SCCCCEEE
T ss_pred EEEEecCccccCHHHHHHHHHHhCC--CCcEeEEE
Confidence 3466777677778888888866553 34665555
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.15 E-value=6.3e-06 Score=87.33 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=102.7
Q ss_pred ccccc-ch--HHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHH
Q 005747 129 YEAFE-SR--MSILNEITDALKNGD-VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIAD 204 (679)
Q Consensus 129 ~~~~~-gr--~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 204 (679)
...|+ |. ......+........ ...+.|+|++|+||||||+.+++.......-..+++++... +..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 34555 43 333444555444333 56799999999999999999999764331112355665433 3333433
Q ss_pred HhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc----hhhcCCCCCC-CCCCcEEEEeecCcch--------h
Q 005747 205 KLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD----LKAAGIPHGD-DHRGCKVLLTARSLDT--------L 271 (679)
Q Consensus 205 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~~v--------~ 271 (679)
.+... ....+...+. .++-+|++||++.... .+.+...+.. ...|..||+||....- +
T Consensus 178 ~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 33211 0112222222 2568999999965421 1122111110 1346788888876211 0
Q ss_pred cccCCCcceEEecCCChHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHcCCChHHHHH
Q 005747 272 STKMDSQKNFSVSFLKEEEAWSLFKKMAG--DYVEGNELKEVARDVAKECAGLPVAIVT 328 (679)
Q Consensus 272 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~I~~~~~glPlai~~ 328 (679)
...+.....+.+.+++.++..+++...+. +...+ .+....|++.++|.+-.+..
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 11122235789999999999999988764 11112 24466788899998765443
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.14 E-value=6.2e-06 Score=76.19 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=42.7
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...++||+.+++.+.+++.....+.+.|+|++|+|||++|+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999877777889999999999999999998864
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.12 E-value=8.5e-05 Score=74.50 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=101.9
Q ss_pred CCcccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALKN-------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
.....++|.++.++++.+++.. ...+.|.|+|++|+|||++|+.+++..... .+.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~v~----- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIK----- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEEEC-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEEEE-----
Confidence 4456788999888888776641 345679999999999999999999876421 22332
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc----------------hhhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD----------------LKAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 255 (679)
..++.... ++.. ......+.+......+.+|++|++..... ...+...+. ..
T Consensus 82 -~~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 -GPELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -HHHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -hHHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 22232221 2211 12233444444445679999999863210 111111110 11
Q ss_pred CCCcEEEEeecCcchhccc-C---CCcceEEecCCChHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCChHH
Q 005747 256 HRGCKVLLTARSLDTLSTK-M---DSQKNFSVSFLKEEEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLPVA 325 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glPla 325 (679)
..+..||.||.....+... . .-...+.+...+.++-.+++........ ....+ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 2345677777654333211 1 2335789999999999999988775322 12222 3455667777643
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=2.1e-06 Score=77.60 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccc-ccccc-chhhhcC----cCCCEEeccCCcCccccChhhhcCCcc
Q 005747 463 SNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGS-DIKRL-PVEVGEL----TLLRLLDLRDCRELEIIPPNVLSKLSH 534 (679)
Q Consensus 463 ~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n-~i~~l-p~~i~~l----~~L~~L~l~~n~~~~~lp~~~~~~l~~ 534 (679)
.+|+.||+++|.+++ +..+.++++|++|+|++| .|+.- -..+..+ ++|++|+|++|..++.-.-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666655 455566666666666666 34421 1123332 356666666665343322222455666
Q ss_pred cceeecCCCC
Q 005747 535 LEELYMGPRS 544 (679)
Q Consensus 535 L~~L~l~~n~ 544 (679)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.07 E-value=2.4e-05 Score=83.67 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=85.4
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC---C-Ce-EEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL---F-DQ-VVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~-~~wv~v~~~~~~~~l~~~i~ 203 (679)
...++||+++++.+++.+......-+.++|++|+|||++|+.++........ . +. .+.++++..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~----------- 247 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK----------- 247 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc-----------
Confidence 4568999999999999997666667789999999999999999998633210 0 11 222333200
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcch-----h-cccCCC
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDT-----L-STKMDS 277 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v-----~-~~~~~~ 277 (679)
.... .......+...+...++.+|++| ...+....+...+. ....++|.+|..... . ......
T Consensus 248 ------~~g~-~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 248 ------YRGE-FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ------ccch-HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 0000 01123344455555567899999 12222222332222 223456665554331 0 101112
Q ss_pred cceEEecCCChHHHHHHHHHHhC
Q 005747 278 QKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 278 ~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
...+.+.+++.++..+++.....
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CccceeCCCCHHHHHHHHHHHHH
Confidence 24699999999999999987654
No 200
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00017 Score=74.23 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=101.0
Q ss_pred CCcccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
....++.|-++.+++|.+.+. -...+-|.++|++|.|||.+|+++++..... .+.+..+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh
Confidence 345567788888887776543 1235779999999999999999999987643 2333333211
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCC--CCC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPH--GDD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~--~~~ 255 (679)
+ .+.. .....+..+........+.+|++|+++... . +..+...+ ...
T Consensus 254 s--------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 Q--------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp C--------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred h--------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1 1111 112233444555555678999999986321 0 00111111 012
Q ss_pred CCCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCC--CccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVE--GNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~I~~~~~glP 323 (679)
..+..||.||...+.+.... .-...+.+...+.++-.++|+........ ..++ .+|++.+.|+-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 23445666776655543322 22457888888888888999887764322 2233 45667777753
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00017 Score=75.11 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=101.2
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
..++.|-++.+++|.+.+. -...+-|.++|++|.|||++|+++++..... .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4566788888877776553 1235789999999999999999999987643 34455443221
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--------c--------hhhcCCCC--CCCCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--------D--------LKAAGIPH--GDDHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~~--~~~~~ 257 (679)
.+.. .....+..+........+.+|++|+++... . +..+...+ .....
T Consensus 254 -------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 1111 112233344444445678999999986321 0 11111111 11233
Q ss_pred CcEEEEeecCcchhcccCC----CcceEEecCCChHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCCh
Q 005747 258 GCKVLLTARSLDTLSTKMD----SQKNFSVSFLKEEEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glP 323 (679)
+..||.||...+.+...+- -...+.+...+.++-.++|+.+..... ...++ ..+++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 4567777776554432221 245788888888888888887765322 22233 45677787754
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00017 Score=74.96 Aligned_cols=173 Identities=16% Similarity=0.199 Sum_probs=101.0
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...+.|-++.+++|.+.+. -...+-|.++|++|.|||++|+++++..... .+.+..+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 3467788888888876542 1346789999999999999999999987643 33444433211
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc----------------hhhcCCCCC--CCCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD----------------LKAAGIPHG--DDHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~ 257 (679)
.+.. .....+..+........+++|++|+++.... ...+...+. ....
T Consensus 282 -------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1111 1122334444444556789999999863210 001111110 1223
Q ss_pred CcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 258 GCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
+..||.||...+.+... ..-...+.+...+.++-.++|+..........+. -...|++.|.|+-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 34455566554433211 1345688999999999999998877643222211 1345677888763
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=4.9e-06 Score=81.13 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=31.7
Q ss_pred CceEEEEeecccCCCCC---ccccCCCCCCEEEcCCCCCCCchhhcCCC--CCcEEEccccccc
Q 005747 440 EQVRVINVSYMNLLSLP---SSLGLLSNLQTLSLYNCKLLDITVIRDLK--KLEVLCLRGSDIK 498 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~L~~n~l~~~~~~~~l~--~L~~L~L~~n~i~ 498 (679)
++|+.|+|++|.++.++ ..+..+++|+.|+|++|.++++..+..+. +|++|+|++|.+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 45666666666665432 33445566666666666655543333333 5555555555544
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=7.7e-05 Score=77.70 Aligned_cols=173 Identities=13% Similarity=0.172 Sum_probs=100.3
Q ss_pred CCcccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 127 KDYEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
.....+.|-++.+++|.+.+. -...+-|.++|++|.|||.+|+++++..... .+.+..+.-.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 252 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLV 252 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhh
Confidence 345677888888888877642 1235789999999999999999999987643 3344443321
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc--------c----c----hhhcCCCCC--CC
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN--------L----D----LKAAGIPHG--DD 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------~----~----~~~l~~~~~--~~ 255 (679)
+ .+.. .....+..+........+++|++|+++.. . . ...+...+. ..
T Consensus 253 ~--------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 Q--------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp S--------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred h--------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 1 1111 11123334444444457899999997421 0 0 011111111 11
Q ss_pred CCCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glP 323 (679)
..+-.||.||...+.+...+ .-...+.++..+.++-.++|+....... ...+ ..+|++.+.|+-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 23445566776655443322 2345888988888888888877654222 2223 345677787753
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.1e-05 Score=77.46 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc-C-CCCCeEEEEEcCC-CcCHHHHHHHHHHHhCCCC
Q 005747 134 SRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAEN-D-KLFDQVVFSEVSE-SQDIRKIQREIADKLGLKF 210 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~ 210 (679)
|.++.++.|...+..++.+...++|+.|+||||+|+.+.+.... . .+.+ ..+++.++ ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 34556777788887666788999999999999999999875211 1 1233 45555543 3444433 33444443211
Q ss_pred CccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCCCCCCCCCCcEEEEeecCcc-hhcccCCCcceEEecCCC
Q 005747 211 DEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGIPHGDDHRGCKVLLTARSLD-TLSTKMDSQKNFSVSFLK 287 (679)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~ 287 (679)
. .+++-++|+|++.... ..+.+...+....+.+.+|++|.+.. +.. ..... .+++.+++
T Consensus 79 ~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~-tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 79 E----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP-TIKSR-VFRVVVNV 140 (305)
T ss_dssp S----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH-HHHTT-SEEEECCC
T ss_pred c----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH-HHHce-eEeCCCCC
Confidence 1 1456799999987642 33444333333345677777775543 332 23334 99999999
Q ss_pred hHHHHHHHHHHh
Q 005747 288 EEEAWSLFKKMA 299 (679)
Q Consensus 288 ~~e~~~Lf~~~~ 299 (679)
+++..+.+.+..
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.94 E-value=0.00053 Score=66.88 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=95.6
Q ss_pred CCcccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDALK---N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++..... .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH
Confidence 445678888887776655432 1 123458899999999999999999876422 23444332111
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc----------------chhhcCCCCC--CCC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL----------------DLKAAGIPHG--DDH 256 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 256 (679)
. ... ........+.+......+.++++|++.... ....+...+. ...
T Consensus 84 ~--------------~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 M--------------FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp S--------------CCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred H--------------hhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 001 111223344444444567899999983210 0011110000 112
Q ss_pred CCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCC-ChHHHH
Q 005747 257 RGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAG-LPVAIV 327 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~g-lPlai~ 327 (679)
.+..||.||...+...... .....+.+...+.++-.+++..........++ .....+++.+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHH
Confidence 3456666776544322111 12357788888888888888877653221111 112345666777 554333
No 207
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=1.1e-05 Score=72.96 Aligned_cols=84 Identities=14% Similarity=0.261 Sum_probs=66.7
Q ss_pred CceEEEEeecccCCCC-CccccCCCCCCEEEcCCCC-CCC--chhhcCC----CCCcEEEcccc-ccccc-chhhhcCcC
Q 005747 440 EQVRVINVSYMNLLSL-PSSLGLLSNLQTLSLYNCK-LLD--ITVIRDL----KKLEVLCLRGS-DIKRL-PVEVGELTL 509 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~L~~n~-l~~--~~~~~~l----~~L~~L~L~~n-~i~~l-p~~i~~l~~ 509 (679)
-.|+.||++++.++.. -..+.++++|+.|+|++|. +++ +..+..+ ++|++|+|++| +|+.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4799999999998732 2346899999999999996 776 5677765 48999999998 58731 235678999
Q ss_pred CCEEeccCCcCccc
Q 005747 510 LRLLDLRDCRELEI 523 (679)
Q Consensus 510 L~~L~l~~n~~~~~ 523 (679)
|++|+|++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999986654
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.92 E-value=5.9e-05 Score=76.61 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccc
Q 005747 137 SILNEITDALKNG--DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEES 214 (679)
Q Consensus 137 ~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~ 214 (679)
.....+..+.... ....+.|+|++|+||||||+.+++..... -..++++++. ++...+...+..
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~------ 86 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKK------ 86 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHc------
Confidence 3344455555433 34678999999999999999999986432 1234565543 233333332210
Q ss_pred hhHHHHHHHHHHHcCCceEEEEecCCCccc---h-hhcCCCCCC-CCCCcEEEEeecCcch-----h---cccCCCcceE
Q 005747 215 ESGRARRLHDRLKKEKRILVILDNIWGNLD---L-KAAGIPHGD-DHRGCKVLLTARSLDT-----L---STKMDSQKNF 281 (679)
Q Consensus 215 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR~~~v-----~---~~~~~~~~~~ 281 (679)
.........+. ++-+|++||+..... + ..+...+.. ...|.+||+||....- . .........+
T Consensus 87 --~~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 87 --GTINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp --TCHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred --CcHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 00112222232 367999999865431 1 112111110 1235578888864321 0 0111223578
Q ss_pred EecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHH
Q 005747 282 SVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVA 325 (679)
Q Consensus 282 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPla 325 (679)
++.+ +.++..+++...+......- -.+....|++.+ |.+-.
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~~l-~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNLEL-RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-SSHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHhC-CCHHH
Confidence 9999 99999999988774211111 145667788888 76543
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.88 E-value=8.5e-06 Score=72.03 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|+...++++.+.+. .....-|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888888888775 23334578999999999999999998653
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.84 E-value=5.4e-05 Score=87.40 Aligned_cols=156 Identities=13% Similarity=0.161 Sum_probs=86.5
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC-----CCeEEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKL-----FDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
...++||+++++++++.+.....+.+.++|.+|+|||++|+.+++....... -..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 4568899999999999998766667889999999999999999998633110 12244454432211
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHc-CCceEEEEecCCCccc-------hhh---cCCCCCCCCCCcEEEEeecCcch--
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKK-EKRILVILDNIWGNLD-------LKA---AGIPHGDDHRGCKVLLTARSLDT-- 270 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~~---l~~~~~~~~~gs~iivTtR~~~v-- 270 (679)
+.... .........+...+.. +++.+|++|++..... ++. +...+ . ..+..+|.+|.....
T Consensus 240 ---g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 240 ---GAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEYRE 313 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHHHH
T ss_pred ---cCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHHhh
Confidence 00000 0112233444444443 3678999999865320 111 11111 1 123345555543221
Q ss_pred ---hcccCCCcceEEecCCChHHHHHHHHHHh
Q 005747 271 ---LSTKMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 271 ---~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
..........+.+.+++.++..+++....
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11111223468999999999999987543
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00041 Score=72.16 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=94.6
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
..++.|-++.+++|.+.+. -...+-|.++|++|.|||++|+++++..... .+.+..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc-
Confidence 4567788888888877653 1235678999999999999999999987543 34444443211
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCC--CCCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHG--DDHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~ 257 (679)
.+.. .....+..+........+.+|++|+++... . +..+...+. ....
T Consensus 245 -------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 -------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp -------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred -------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 0111 112233444444455678999999974210 0 111111110 1223
Q ss_pred CcEEEEeecCcchhcccC----CCcceEEecCCCh-HHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCCh
Q 005747 258 GCKVLLTARSLDTLSTKM----DSQKNFSVSFLKE-EEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glP 323 (679)
+-.||.||...+.+.... .-...+++..+++ ++-..+|+....... ...++ ..+++.+.|+-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 445666776544432211 2234677765654 555566666554322 22233 45677777753
No 212
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=1.9e-05 Score=72.72 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 005747 134 SRMSILNEITDALKN---GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKF 210 (679)
Q Consensus 134 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 210 (679)
++.+.++.+.+++.+ ...+.+.|+|++|+||||||+.++........+ .+++++ ..++...+........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCch
Confidence 355566666666543 235789999999999999999999887522112 223333 3444444443332111
Q ss_pred CccchhHHHHHHHHHHHcCCceEEEEecCCC--ccchhh--cCCCCCC-CCCCcEEEEeecC
Q 005747 211 DEESESGRARRLHDRLKKEKRILVILDNIWG--NLDLKA--AGIPHGD-DHRGCKVLLTARS 267 (679)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~iivTtR~ 267 (679)
. . .+.+.+. +.-+|||||++. .+.|.. +...+.. ...|..+|+||..
T Consensus 91 ~----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 D----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp C----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred H----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 0 2233333 467999999973 233321 1111111 1246678888864
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.75 E-value=0.0004 Score=73.54 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=97.8
Q ss_pred CcccccchHHHHHHHHHHhc---CC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 128 DYEAFESRMSILNEITDALK---NG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
....++|.++.++++.+.+. .. -.+-|.|+|++|+|||+||+.++...... .+.++++.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 34567888887776665442 21 23458899999999999999999976432 234444432210
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc----------------chhhcCCCCC--CCCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL----------------DLKAAGIPHG--DDHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 257 (679)
... ........+......+.+.+|++|++.... .+..+...+. ....
T Consensus 89 --------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 000 011223334444444678999999985421 1111111110 1123
Q ss_pred CcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 258 GCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
+..||.||...+.+.... .....+.+...+.++-.+++...+......++. ....+++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 556777776654432211 223478888888888888888776533211111 1334777888876
No 214
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.75 E-value=2.6e-05 Score=76.90 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH
Q 005747 129 YEAFESRMSILNEITDALK---N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 196 (679)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++..... | +.+..+.-.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~v~~~~~~~~- 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--F---FSMGGSSFIEM- 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--C---CCCCSCTTTTS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEechHHHHHh-
Confidence 4567777766666655443 1 123447899999999999999999986532 2 11222211100
Q ss_pred HHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-----------------chhhcCCCCCC---CC
Q 005747 197 KIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-----------------DLKAAGIPHGD---DH 256 (679)
Q Consensus 197 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~---~~ 256 (679)
..+.... ....+.+.....++.+|++|++.... .+..+...+.. ..
T Consensus 84 --------~~~~~~~------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 84 --------FVGLGAS------RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------CSSSCSS------SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hcchHHH------HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0010000 01112222333467899999985431 12222222211 11
Q ss_pred CCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhC
Q 005747 257 RGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
....||.||.....+.... .....+.+...+.++..+++...+.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2245666776543221111 2235688889999999999887765
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.75 E-value=0.00023 Score=75.94 Aligned_cols=177 Identities=13% Similarity=0.192 Sum_probs=100.2
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK-------------NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...++|.+..++++.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 4568899999998888764 234567899999999999999999887632 233444321
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc-------------chhhcCCCCC--CCCCCcE
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL-------------DLKAAGIPHG--DDHRGCK 260 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~ 260 (679)
+ .. .... ........+......+++.+|+||++.... ....+...+. ....+.+
T Consensus 274 --l----~~----~~~g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 --I----MS----KLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --H----HT----SCTT-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --h----hh----hhcc-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 10 0000 111223334444445678899999983210 0111111110 1123445
Q ss_pred EEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC-hHHHH
Q 005747 261 VLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL-PVAIV 327 (679)
Q Consensus 261 iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl-Plai~ 327 (679)
||.||.....+.... .....+.+...+.++-.+++...+.......+ ....++++.+.|. +-.+.
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLA 412 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHH
Confidence 666666543221111 23347899999999999999988764322111 1124566677775 43344
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=0.00015 Score=82.76 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=85.9
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCC-CC---Ce-EEEEEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDK-LF---DQ-VVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~-~~wv~v~~~~~~~~l~~~i~ 203 (679)
...++||+++++++.+.+......-+.++|++|+|||++|+.+++...... .+ ++ .+.++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 456899999999999999866666788999999999999999999863211 11 11 111222
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcch-----hc-ccCCC
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDT-----LS-TKMDS 277 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v-----~~-~~~~~ 277 (679)
+...... -......+.......++.+|++|. ..+....+...+. ....++|.||..... .. .....
T Consensus 245 ---g~~~~G~-~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 ---GTKYRGE-FEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ---cccccch-HHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 1110111 112233444555556778999992 2222222322222 234566666654331 00 00112
Q ss_pred cceEEecCCChHHHHHHHHHHhC
Q 005747 278 QKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 278 ~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
...+.+..++.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 24799999999999999987654
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.69 E-value=0.0004 Score=79.27 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=91.6
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEE-EEcCCCcCHHHHHHHHH
Q 005747 129 YEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVF-SEVSESQDIRKIQREIA 203 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~v~~~~~~~~l~~~i~ 203 (679)
...++||+.+++++++.+......-+.++|.+|+|||++|+.+++...... ...+.+| ++.+...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~---------- 254 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL---------- 254 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh----------
Confidence 456889999999999999876667789999999999999999998763221 1233333 2222110
Q ss_pred HHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--------c---hhhcCCCCCCCCCCcEEEEeecCcchhc
Q 005747 204 DKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--------D---LKAAGIPHGDDHRGCKVLLTARSLDTLS 272 (679)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~---~~~l~~~~~~~~~gs~iivTtR~~~v~~ 272 (679)
.+... ...-......+.+.+...++.+|++|++.... . ...+...+ . ..+.++|.+|.......
T Consensus 255 --~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 255 --AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp --CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHHC
T ss_pred --ccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHhh
Confidence 00000 11112234445555544557999999986431 1 11222222 2 23456666665432110
Q ss_pred -----c-cCCCcceEEecCCChHHHHHHHHHHh
Q 005747 273 -----T-KMDSQKNFSVSFLKEEEAWSLFKKMA 299 (679)
Q Consensus 273 -----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 299 (679)
. .......+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0 01112368999999999998887654
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.62 E-value=0.0046 Score=62.76 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=102.9
Q ss_pred CcccccchHHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 128 DYEAFESRMSILNEITDALKN-----GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
....++|.+..++.+...+.. .....+.++|++|+||||||+.++...... | .....+-.....++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGDM---- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHHH----
Confidence 445677888877777666642 234679999999999999999999986432 1 11111111111111
Q ss_pred HHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcCC---CCC------CC---------CCCcEEE
Q 005747 203 ADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAGI---PHG------DD---------HRGCKVL 262 (679)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~---~~~------~~---------~~gs~ii 262 (679)
..+...+ .++-++++|++.... ..+.+.. ... .. -+...++
T Consensus 94 -----------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 94 -----------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 1111111 234567778764431 1111100 000 00 0112233
Q ss_pred EeecCcchhcc--cCCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh------h
Q 005747 263 LTARSLDTLST--KMDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTVATAL------R 334 (679)
Q Consensus 263 vTtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~~~~L------~ 334 (679)
-.|+...-+.. .........+++.+.++-.+++.+.+..... ..-.+.+..|++.+.|.|-.+..+...+ .
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 33333222211 1112236889999999999999887642111 1224678889999999997554433222 2
Q ss_pred cC--CChhHHHHHHHHhc
Q 005747 335 DN--NSLFDWKDALEQLR 350 (679)
Q Consensus 335 ~~--~~~~~w~~~l~~l~ 350 (679)
+. -+.+.-+.+++.+.
T Consensus 234 ~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 234 KADRINTDIVLKTMEVLN 251 (334)
T ss_dssp TCSSBCHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHhC
Confidence 21 24555666666654
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=0.00016 Score=72.95 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=60.9
Q ss_pred cccchHHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 131 AFESRMSILNEITDALKNG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.++|.+..++.+...+... ....+.++|++|+|||++|+.++...... -...+.++++.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~---- 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA---- 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH----
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc----
Confidence 4568888888887776521 13579999999999999999999986432 12345666654332211
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
..+.+|....... ......+...+.....-++++|++...
T Consensus 92 ~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 92 VSRLIGAPPGYVG-YEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHHHCCCTTSTT-TTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred HHHhcCCCCcccc-ccccchHHHHHHhCCCeEEEEeChhhc
Confidence 1122332211110 000012333444344579999999654
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.54 E-value=0.00024 Score=66.46 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 005747 135 RMSILNEITDALKNG----DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKF 210 (679)
Q Consensus 135 r~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 210 (679)
+...++.+.+++... ..+.+.|+|++|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 444556666666532 12789999999999999999999987643 3346666553 344444332211
Q ss_pred CccchhHHHHHHHHHHHcCCceEEEEecCCCc--cchhhc--CC-CCCCC-CCCcEEEEeecC
Q 005747 211 DEESESGRARRLHDRLKKEKRILVILDNIWGN--LDLKAA--GI-PHGDD-HRGCKVLLTARS 267 (679)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l--~~-~~~~~-~~gs~iivTtR~ 267 (679)
.. ...+.+.+.. .-+|||||++.. ..|..- .. .+... ..+.++|+||..
T Consensus 104 --~~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QT----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CC----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --ch----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11 1123333432 249999999653 333221 11 11111 235578888874
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.53 E-value=0.00058 Score=68.59 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALKN--------------GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|++..++.+...+.. ...+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999988888877643 2345688999999999999999998874
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.42 E-value=3.5e-05 Score=67.82 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|++..++++.+.+. .....-|.|+|..|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 46788888888777765 12334577999999999999999987543
No 223
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.36 E-value=0.0013 Score=69.85 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHHh---cCC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 129 YEAFESRMSILNEITDAL---KNG--DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 467889998877655443 333 235788999999999999999999865
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.35 E-value=0.0021 Score=72.21 Aligned_cols=171 Identities=13% Similarity=0.208 Sum_probs=95.6
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...+.|-++.+++|.+++. . ...+-|.++|++|.|||+||+++++..... .+.|+.++-
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~l--- 274 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEI--- 274 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHHH---
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHHh---
Confidence 4456676666666655442 1 235679999999999999999999876532 344443221
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--------c-----hhhcCCCCC--CCCCCcE
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--------D-----LKAAGIPHG--DDHRGCK 260 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-----~~~l~~~~~--~~~~gs~ 260 (679)
. + .... .....+..+.+......+.+|++|+++... . ...+...+. ....+-.
T Consensus 275 -------~---s-k~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 275 -------M---S-KLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -------H---S-SCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -------h---c-ccch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 0 0 0001 112233444444455678999999985421 0 011111110 0112334
Q ss_pred EEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHcCCCh
Q 005747 261 VLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYV--EGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 261 iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~glP 323 (679)
||.||...+.+.... .-...+++...+.++-.++|........ ...+ ..+|++++.|+-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 555665544332222 2345789999999999999987765322 2222 345777888764
No 225
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.33 E-value=0.0023 Score=62.20 Aligned_cols=175 Identities=16% Similarity=0.171 Sum_probs=89.0
Q ss_pred CCcccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDALK---N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....++|.++.+.++.+... . .-.+-+.|+|++|+|||||++.++..... ..+.++..
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~---- 83 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS---- 83 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH----
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 344567787766555544322 1 01223899999999999999999987642 22333321
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCCCC--C
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHGDD--H 256 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~ 256 (679)
++. ... .. ........+.+......+.++++|++.... . ...+...+..+ .
T Consensus 84 --~~~----~~~----~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 --DFV----EMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp --HHH----HSC----TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred --HHH----HHH----hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 111 000 00 011122333444332346899999984210 0 11111111111 1
Q ss_pred CCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 257 RGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
....++.||...+.+.... .....+.+...+.++-.+++...+......++ .....+++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 2234445666555442211 23457889999998888888876643221111 11234666676653
No 226
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.31 E-value=0.00043 Score=72.33 Aligned_cols=185 Identities=16% Similarity=0.023 Sum_probs=94.3
Q ss_pred hhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCCCcc----------
Q 005747 480 VIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSFDKW---------- 548 (679)
Q Consensus 480 ~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~---------- 548 (679)
.|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++...|.++..|+.+.+..+.....
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 4555666666666543 333433 3455666666666553 4455555566666666665544321100
Q ss_pred ----hhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcCcccc-ccccccccEEEEecCccccc
Q 005747 549 ----EVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGGVWGW-EYADIWCREFKIDLDSKIRL 621 (679)
Q Consensus 549 ----~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~l~~~~~~~~ 621 (679)
+..+.......+.++.+|+.+.+..+.. .++... .+..|+.+.......... ......++.+.+.. +....
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~-~i~~I 311 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD-SVKFI 311 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT-TCCEE
T ss_pred eEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecccccccccccccccccc-cccee
Confidence 0000112233455566666666654432 222222 445555544432221111 11223455555532 22333
Q ss_pred hHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCcCccCCC
Q 005747 622 KDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSHLTLNPA 675 (679)
Q Consensus 622 ~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~l~~lp~ 675 (679)
....+..+++|+.++|.+ .+..+.... +.++.+|+.+++..| ++.++.
T Consensus 312 ~~~aF~~c~~L~~i~lp~----~v~~I~~~a-F~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPY----LVEEIGKRS-FRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp CTTTTTTCTTCCEECCCT----TCCEECTTT-TTTCTTCCEECCCTT-CCEECT
T ss_pred chhhhcCCCCCCEEEeCC----cccEEhHHh-ccCCCCCCEEEECcc-ccEehH
Confidence 445555678899999865 355554433 577889999998766 666554
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.004 Score=61.13 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=83.9
Q ss_pred CcccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 128 DYEAFESRMSILNEITDALK----N---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
....+.|-++.++.|.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++...+-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 34566787777777766432 1 11223999999999999999999987643 244554433211
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc-------------hhhcCCCCC--CCCCCc
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD-------------LKAAGIPHG--DDHRGC 259 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs 259 (679)
.. .. .....+..+.+......+.++++|++..... ...+...+. ......
T Consensus 83 ~~--------------~~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 83 MY--------------VG-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ST--------------TH-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hh--------------hh-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 00 00 0011223334433334678999999864210 000100110 112234
Q ss_pred EEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhC
Q 005747 260 KVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 260 ~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
-++.+|...+++.... .-...+.+...+.++-.++|+....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 4556676665553221 3456788999999999999988764
No 228
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.21 E-value=0.0012 Score=68.83 Aligned_cols=206 Identities=11% Similarity=-0.005 Sum_probs=126.3
Q ss_pred CceEEEEeecccCCCCC-ccccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccchhhhcCcCCCEEecc
Q 005747 440 EQVRVINVSYMNLLSLP-SSLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPVEVGELTLLRLLDLR 516 (679)
Q Consensus 440 ~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~l~ 516 (679)
.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ++. ...+.++..|+.+.+..+. ..+........+|+.+.+.
T Consensus 162 ~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 162 ESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIP 238 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEEC
T ss_pred CCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhcccCCCceEEEC
Confidence 45666666543 33333 24666777777776554 332 2446666677766665542 2333334455677777776
Q ss_pred CCcCccccChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEE
Q 005747 517 DCRELEIIPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKIL 594 (679)
Q Consensus 517 ~n~~~~~lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~ 594 (679)
.+ ...+....+..+.+|+.+.+..+.. ......|..+..|+.+....+. ++... .+.+|+.+.+.
T Consensus 239 ~~--~~~i~~~~f~~~~~l~~~~~~~~~~--------~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 239 DS--FTELGKSVFYGCTDLESISIQNNKL--------RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp TT--CCEECSSTTTTCSSCCEEEECCTTC--------EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred CC--ceecccccccccccceeEEcCCCcc--------eeeccccccccccceeccCcee---eccccccccccccccccc
Confidence 53 4556666688889999998877533 3445678888999988876554 33333 67888888874
Q ss_pred EcCcccccc----ccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecC
Q 005747 595 IGGVWGWEY----ADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGS 668 (679)
Q Consensus 595 ~~~~~~~~~----~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n 668 (679)
.+ +..... ....++.+.+.. +........+..+.+|+.+.+..+ +..+.... +.++++|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~a-F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS----LRKIGANA-FQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT----CCEECTTT-BTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc----ccEehHHH-hhCCCCCCEEEECCC
Confidence 32 222211 123455555532 233344556666789999999763 45554443 678899999999765
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.15 E-value=0.004 Score=61.35 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=91.4
Q ss_pred CCCcccccchHHHHHHHHHHhc---CC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc
Q 005747 126 NKDYEAFESRMSILNEITDALK---NG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ 193 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 193 (679)
......++|.++.++++.+... .. -.+-+.|+|++|+||||||+.++..... ..+.+...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH---
Confidence 3445677888776666554432 10 1123899999999999999999987642 23333321
Q ss_pred CHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc------------cc----hhhcCCCCCCC--
Q 005747 194 DIRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN------------LD----LKAAGIPHGDD-- 255 (679)
Q Consensus 194 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------------~~----~~~l~~~~~~~-- 255 (679)
++.. .. . .........+.+......+.++++|++... .. ...+...+..+
T Consensus 108 ---~~~~----~~----~-~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 ---DFVE----MF----V-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---HHHH----ST----T-THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---HHHH----HH----h-hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1110 00 0 001112233444443345689999998421 00 11111111111
Q ss_pred CCCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 256 HRGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 256 ~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
.....++.||...+.+... ......+.+...+.++-.+++...+......++ .....+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 1223444456554444211 123458899999999888888877653221111 11234666777754
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.10 E-value=0.0017 Score=70.48 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALK------NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|-++.++.+.+.+. ......+.++|++|+||||+|+.++....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45677777666655432 23456899999999999999999998874
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.08 E-value=0.00068 Score=77.21 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=81.0
Q ss_pred ccccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHH
Q 005747 130 EAFESRMSILNEITDALKN---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQR 200 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 200 (679)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccc---
Confidence 3578999988888887751 112369999999999999999999986322 22345666654321100
Q ss_pred HHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--chhhcC-----CCCCC------CCCCcEEEEeecC
Q 005747 201 EIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--DLKAAG-----IPHGD------DHRGCKVLLTARS 267 (679)
Q Consensus 201 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~-----~~~~~------~~~gs~iivTtR~ 267 (679)
. . ...+...+.....-+|+||++.... ....+. ..+.. .....+||.||..
T Consensus 566 -----------~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -----------T-S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C-C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c-c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 0 1112222333344699999996542 111111 01110 1235678888873
Q ss_pred cc-----h-------h-c-ccCCCcceEEecCCChHHHHHHHHHH
Q 005747 268 LD-----T-------L-S-TKMDSQKNFSVSFLKEEEAWSLFKKM 298 (679)
Q Consensus 268 ~~-----v-------~-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~ 298 (679)
.. + . . ....-...+.+.+++.++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 10 0 0 0 00112347888899888877776654
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.06 E-value=0.0027 Score=63.15 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.+.+.++|++|+|||+||+.+++....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999999999999998743
No 233
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00054 Score=62.99 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=36.6
Q ss_pred CceEEEEeecc-cCCC-----CCccccCCCCCCEEEcCCCCCCCc------hhhcCCCCCcEEEccccccc-----ccch
Q 005747 440 EQVRVINVSYM-NLLS-----LPSSLGLLSNLQTLSLYNCKLLDI------TVIRDLKKLEVLCLRGSDIK-----RLPV 502 (679)
Q Consensus 440 ~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~L~~n~i~-----~lp~ 502 (679)
..|+.|+|++| .+.. +-..+..-+.|+.|+|++|.+.+. ..+..-+.|++|+|++|.|. .+-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35566666553 4431 222344445556666666655541 22334445555555555554 1223
Q ss_pred hhhcCcCCCEEeccC
Q 005747 503 EVGELTLLRLLDLRD 517 (679)
Q Consensus 503 ~i~~l~~L~~L~l~~ 517 (679)
.+..-+.|+.|+|++
T Consensus 121 aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 121 STLVTQSIVEFKADN 135 (197)
T ss_dssp HTTTTCCCSEEECCC
T ss_pred HHhhCCceeEEECCC
Confidence 333334455555543
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.99 E-value=0.005 Score=65.53 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=91.5
Q ss_pred CCcccccchHHHHHHHHHHh---cCC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 127 KDYEAFESRMSILNEITDAL---KNG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
.....++|.++.++++.+.. .+. -.+-+.|+|++|+||||||+.++..... ..+.++.++-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH
Confidence 34556788887766665543 221 1234899999999999999999987642 234455433111
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc------------c----hhhcCCCCCC--CC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL------------D----LKAAGIPHGD--DH 256 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~--~~ 256 (679)
. ... ........+.+......+.++++|++.... . +..+...+.. ..
T Consensus 103 ~--------------~~g-~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 103 M--------------FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp S--------------CTT-HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred h--------------hhh-hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0 000 000111111111111235799999984321 0 1111111111 12
Q ss_pred CCcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCh
Q 005747 257 RGCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGLP 323 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~glP 323 (679)
.+..++.||...+.+.... .....+.+...+.++-.+++...+......++ .....|++.+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 3345555666555442211 23458899999999888988876643221111 11334666777764
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.0046 Score=59.41 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC----------ccchh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQREIADKLGLKFD----------EESES 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 216 (679)
-.++.|+|++|+|||||++.++....... .-..++|++....++..++. .+++.++.... ..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999988532211 13568999888766655543 34555654321 01111
Q ss_pred H---HHHHHHHHHHcCCceEEEEecCCC
Q 005747 217 G---RARRLHDRLKKEKRILVILDNIWG 241 (679)
Q Consensus 217 ~---~~~~l~~~l~~~k~~LlVlDdv~~ 241 (679)
. ....+.+.+...+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 122344444445677999998753
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.91 E-value=0.001 Score=66.51 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 46788888888877765 23345677999999999999999998653
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.84 E-value=0.0021 Score=73.21 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=59.0
Q ss_pred cccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 131 AFESRMSILNEITDALKN---------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
.++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 467888888888777651 1234789999999999999999998873 2345566554322100
Q ss_pred HHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc
Q 005747 202 IADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN 242 (679)
Q Consensus 202 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 242 (679)
+.+.+|.+.. .........+...+......+|+||++...
T Consensus 530 ~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0011121111 111111122344444445679999999754
No 238
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.84 E-value=0.0075 Score=62.77 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=49.6
Q ss_pred hhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEEEEcCccccc-
Q 005747 526 PNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKILIGGVWGWE- 602 (679)
Q Consensus 526 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l~~~~~~~~~- 602 (679)
...|.++.+|+.+.+.++.. ......|.++++|+.+.+. +.++.++... .+.+|+.+.+..+ +....
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~--------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV--------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC--------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred cceeeecccccEEecccccc--------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 33455555555555544221 1223445555555555553 3444444443 4455555554211 11110
Q ss_pred ---cccccccEEEEecCccccchHHHHHHhcccceeeccccccccccccccccCcCCCCCccEEEEecCc
Q 005747 603 ---YADIWCREFKIDLDSKIRLKDGLILKLQGIEDLWLSDLEERDVNYFVNELDKVGPSQLKHLYIRGSH 669 (679)
Q Consensus 603 ---~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l~~i~~~l~~~~~~~L~~L~l~~n~ 669 (679)
.....|+.+.+.. +........+..+++|+.+++.++. . .+ ..+ ....+|+.+.+..|.
T Consensus 328 ~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~--~--~~-~~~--~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR--S--QW-NAI--STDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH--H--HH-HTC--BCCCCC---------
T ss_pred hHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCce--e--eh-hhh--hccCCCCEEEeCCCC
Confidence 0111233333311 1222334444555677777776654 1 11 122 345666666665554
No 239
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.82 E-value=0.00073 Score=62.11 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=81.4
Q ss_pred ccCCCCCCEEEcCCC-CCCC------chhhcCCCCCcEEEccccccc-----ccchhhhcCcCCCEEeccCCcCccc---
Q 005747 459 LGLLSNLQTLSLYNC-KLLD------ITVIRDLKKLEVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDCRELEI--- 523 (679)
Q Consensus 459 ~~~l~~L~~L~L~~n-~l~~------~~~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~l~~n~~~~~--- 523 (679)
+.+-+.|+.|+|++| .+.+ ...+..-+.|+.|+|++|.|. .+...+..-+.|++|+|+.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999986 7765 145677789999999999987 3556677788999999999984322
Q ss_pred -cChhhhcCCcccceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCC
Q 005747 524 -IPPNVLSKLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 577 (679)
Q Consensus 524 -lp~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 577 (679)
+-.. +..-+.|++|+|++|....+.......+...+..-++|+.|+++.|.+.
T Consensus 117 ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1112 4445679999998753211111011134456667789999999877543
No 240
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.79 E-value=0.0057 Score=60.21 Aligned_cols=85 Identities=9% Similarity=0.080 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----cchhHHH-HHHHHHH
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----ESESGRA-RRLHDRL 226 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~l 226 (679)
++-|.|++|+|||||+.+++.....+..-..++||+....++.. .+++++...+. ....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999988775432112468999988888764 37788876432 1222222 3333444
Q ss_pred ---HcCCceEEEEecCCCc
Q 005747 227 ---KKEKRILVILDNIWGN 242 (679)
Q Consensus 227 ---~~~k~~LlVlDdv~~~ 242 (679)
..++.-++|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4567789999988543
No 241
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.78 E-value=0.0023 Score=66.66 Aligned_cols=107 Identities=12% Similarity=0.170 Sum_probs=60.5
Q ss_pred cccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcCccccChhhhcCCccc
Q 005747 458 SLGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRELEIIPPNVLSKLSHL 535 (679)
Q Consensus 458 ~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L 535 (679)
.|.++.+|+.+.+..+...- ...|.++.+|+.+.+. +.++.++. .+.++.+|+.++|..+ +..+...+|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence 35566666666665433211 2445566666666664 34555544 4456666666666553 455555556666666
Q ss_pred ceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeec
Q 005747 536 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD 575 (679)
Q Consensus 536 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 575 (679)
+.+.+..+ + .......|.++++|+.+++.++.
T Consensus 337 ~~i~ip~s-v-------~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-V-------TKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-C-------CBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-c-------CEEhHhHhhCCCCCCEEEECCce
Confidence 66666542 3 22334566666666666665543
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.71 E-value=0.0082 Score=68.36 Aligned_cols=152 Identities=12% Similarity=0.179 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALKN-------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...++|.+..++++.+++.. .....|.|+|++|+||||||+.++...... .+.++.+...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~l~-- 275 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIM-- 275 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHHHS--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchHhh--
Confidence 45678888888887776641 234579999999999999999998875321 2344332110
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCcc--------c-----hhhc---CCCCCCCCCCc
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNL--------D-----LKAA---GIPHGDDHRGC 259 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-----~~~l---~~~~~~~~~gs 259 (679)
.... .........+.+......+.++++|++.... . ...+ ..... ...+.
T Consensus 276 ------------~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 276 ------------SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp ------------SSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred ------------hhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 0000 0111233344444444567899999984221 0 0111 11111 12234
Q ss_pred EEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhCC
Q 005747 260 KVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAGD 301 (679)
Q Consensus 260 ~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 301 (679)
.+|.||.....+.... .....+.+...+.++-.+++...+..
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 5555665433222111 22346788888999999999877653
No 243
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.0026 Score=56.02 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
....++|+|+.|+|||||++.++....... ..++|+...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG--KNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT--CCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEcHHH
Confidence 557899999999999999999999865421 1256776554
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.67 E-value=0.0077 Score=61.04 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=55.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc------cchhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE------ESESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 224 (679)
-+++.|+|++|+||||||.+++...... -..++|++....++.. .+++++..... .+.......+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4699999999999999999999876532 2347899888777654 56667665321 112222223332
Q ss_pred HHHcCCceEEEEecCCCc
Q 005747 225 RLKKEKRILVILDNIWGN 242 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~~~ 242 (679)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 233355679999987543
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.66 E-value=0.0088 Score=60.79 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=43.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQREIADKLGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 209 (679)
-.++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. +++.++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~ 183 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVD 183 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 46899999999999999999988743211 134689999998888776654 45566553
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.62 E-value=0.0086 Score=56.45 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=36.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKL 206 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 206 (679)
-.++.|+|.+|+||||++..++. .. -..++|++....++..++.. +.+.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~ 69 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETR 69 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhc
Confidence 36899999999999999999988 21 24688888877666665543 33333
No 247
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.0025 Score=63.06 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc--CCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV--SESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKKE 229 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 229 (679)
+++.|+|++|+|||+||.+++.... ..+.|++. ....+. ...........+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-
Confidence 5678999999999999999988621 12456666 222110 001223334445555653
Q ss_pred CceEEEEecCCC
Q 005747 230 KRILVILDNIWG 241 (679)
Q Consensus 230 k~~LlVlDdv~~ 241 (679)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 34 999999854
No 248
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.61 E-value=0.0052 Score=63.60 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=79.1
Q ss_pred cccCCCCCCEEEcCCCCCCC--chhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcCccccChhhhcCCcc
Q 005747 458 SLGLLSNLQTLSLYNCKLLD--ITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRELEIIPPNVLSKLSH 534 (679)
Q Consensus 458 ~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~ 534 (679)
.+..+.+|+.+.+..+ +.. ...+.++.+|+.+.+..+ ++.++. .+.++.+|+.+.+..+ +..++...|.++++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 3556667777776543 222 245667777777777655 555543 4566777777777653 56667666777888
Q ss_pred cceeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEE
Q 005747 535 LEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKI 593 (679)
Q Consensus 535 L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l 593 (679)
|+.+.+.++.+ .......|.++.+|+.+.|.. .++.++... .+.+|+.+.+
T Consensus 288 L~~i~l~~~~i-------~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 288 LTKVVMDNSAI-------ETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEEEECCTTC-------CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccc-------ceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 88888776665 333456777778888777753 366665544 5566666654
No 249
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.0024 Score=54.75 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=37.3
Q ss_pred EEEccccccc--ccchhhhcCcCCCEEeccCCcCccccChhhhcCCcccceeecCCCCC
Q 005747 489 VLCLRGSDIK--RLPVEVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLEELYMGPRSF 545 (679)
Q Consensus 489 ~L~L~~n~i~--~lp~~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~~L~l~~n~~ 545 (679)
.++.+++.++ .+|..+. .+|++|+|++|. +..+|.+.|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5666777776 6765432 357777777776 5667777677777777777777766
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.55 E-value=0.0073 Score=60.92 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------ccch-h
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK----LFDQVVFSEVSESQDIRKIQREIADKLGLKFD---------EESE-S 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~---------~~~~-~ 216 (679)
-.++.|+|.+|+||||+|.+++....... .-..++|++....++.+++.. +++.++.... .... .
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999987743221 124689999998888777653 4566665421 0111 1
Q ss_pred ---HHHHHHHHHHHc-CCceEEEEecCC
Q 005747 217 ---GRARRLHDRLKK-EKRILVILDNIW 240 (679)
Q Consensus 217 ---~~~~~l~~~l~~-~k~~LlVlDdv~ 240 (679)
.....+...+.+ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 122334444444 456788889874
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.53 E-value=0.017 Score=58.67 Aligned_cols=164 Identities=10% Similarity=-0.032 Sum_probs=99.5
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHH
Q 005747 144 DALKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLH 223 (679)
Q Consensus 144 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~ 223 (679)
+.+.+.-.++..++|..|.||++.++.+.+..... .|+....+.+....++.++...+.. .
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~----------------- 71 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-M----------------- 71 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-H-----------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-c-----------------
Confidence 33433446789999999999999999998865422 2433222334444555554433211 0
Q ss_pred HHHHcCCceEEEEecCCC-c--cchhhcCCCCCCCCCCcEEEEeecC-------cchhcccCCCcceEEecCCChHHHHH
Q 005747 224 DRLKKEKRILVILDNIWG-N--LDLKAAGIPHGDDHRGCKVLLTARS-------LDTLSTKMDSQKNFSVSFLKEEEAWS 293 (679)
Q Consensus 224 ~~l~~~k~~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~iivTtR~-------~~v~~~~~~~~~~~~l~~L~~~e~~~ 293 (679)
.+ .+++-++|+|++.. . ..++.+...+....+++.+|++|.. ..+..........++..+++.++...
T Consensus 72 -pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 72 -SL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp -HH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred -CC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 11 25567889999865 2 3445554444334457777777643 12333223445689999999999988
Q ss_pred HHHHHhCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 005747 294 LFKKMAGDYVEGNELKEVARDVAKECAGLPVAIVTV 329 (679)
Q Consensus 294 Lf~~~~~~~~~~~~~~~~~~~I~~~~~glPlai~~~ 329 (679)
.+.+.+......- -.+.+..+++.++|.+..+...
T Consensus 150 ~l~~~~~~~g~~i-~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 150 WVAARAKQLNLEL-DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHTTCEE-CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHhchHHHHHHHH
Confidence 8877764222111 1456778888899988766543
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.52 E-value=0.0091 Score=61.71 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------ccch--
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSESQDIRKIQREIADKLGLKFD---------EESE-- 215 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~---------~~~~-- 215 (679)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....++..++. .+++.++.... ....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 3699999999999999999876443221 123568999888777666543 46677765421 0011
Q ss_pred --hHHHHHHHHHHHcCCceEEEEecCC
Q 005747 216 --SGRARRLHDRLKKEKRILVILDNIW 240 (679)
Q Consensus 216 --~~~~~~l~~~l~~~k~~LlVlDdv~ 240 (679)
......+...+...+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1122333344444567788999864
No 253
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.50 E-value=0.0097 Score=61.52 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=79.1
Q ss_pred ccCCCCCCEEEcCCCCCCC-chhhcCCCCCcEEEcccccccccch-hhhcCcCCCEEeccCCcCccccChhhhcCCcccc
Q 005747 459 LGLLSNLQTLSLYNCKLLD-ITVIRDLKKLEVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCRELEIIPPNVLSKLSHLE 536 (679)
Q Consensus 459 ~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~l~~n~~~~~lp~~~~~~l~~L~ 536 (679)
+..+..+..+.+..+.-.. ...+....+|+.+.+..+ ++.++. .+..+.+|+.+.+..+ +..++...|.++.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence 3344455555443322111 244566677777777554 444433 4567778888888764 5666666678888888
Q ss_pred eeecCCCCCCcchhhhcccccccccccCCCcEEEEEeecCCCCCCcc--cccccceeEE
Q 005747 537 ELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTLPRGL--FLEKLERYKI 593 (679)
Q Consensus 537 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~--~l~~L~~L~l 593 (679)
.+.+..+ + .......|.++++|+.+.+..+.++.++... .+.+|+.+.+
T Consensus 267 ~i~l~~~-i-------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 267 TLNFYAK-V-------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp EEEECCC-C-------SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccc-c-------eeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 8887653 3 2233456788888888888877787777665 6677777765
No 254
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.48 E-value=0.0042 Score=62.11 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhc-cCCCCCeEEEEEcC
Q 005747 134 SRMSILNEITDALKNG---DVNTLGIYGIGGIGKTTLAKEVARRAE-NDKLFDQVVFSEVS 190 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~ 190 (679)
++...++.+.+++... ..+.+.|+|+.|+|||+||+.+++... .. ...+.+++++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~ 190 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH
Confidence 3445566666666532 247889999999999999999999866 43 2235566543
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.47 E-value=0.0095 Score=60.04 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=56.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCC---------CC-----CeEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDK---------LF-----DQVVFSEVSESQDIRKIQREIADKLGLKFD----- 211 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----- 211 (679)
-+++.|+|.+|+||||+|.+++....... .. ..++|++....++.+++.. +++.++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46899999999999999999987632110 11 4689999998888877664 4566665421
Q ss_pred ----ccchhH----HHHHHHHHHHc-CCceEEEEecCC
Q 005747 212 ----EESESG----RARRLHDRLKK-EKRILVILDNIW 240 (679)
Q Consensus 212 ----~~~~~~----~~~~l~~~l~~-~k~~LlVlDdv~ 240 (679)
.....+ ....+...+.+ .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 001111 22234444443 445688888874
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.39 E-value=0.013 Score=59.63 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 225 (679)
-+++.|+|.+|+||||||.+++...... -..++|++....++.. .++.++...+. ....+....+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998765432 2458899988777653 35666654321 1112222233333
Q ss_pred HH-cCCceEEEEecCCC
Q 005747 226 LK-KEKRILVILDNIWG 241 (679)
Q Consensus 226 l~-~~k~~LlVlDdv~~ 241 (679)
+. ..+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 33 34567999998743
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.36 E-value=0.0042 Score=71.63 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=42.3
Q ss_pred cccchHHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 131 AFESRMSILNEITDALKNG---------DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++..... -...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechh
Confidence 4689998888887776521 12578999999999999999999886432 12245565554
No 258
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0056 Score=52.39 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=36.6
Q ss_pred EEEeecccCC--CCCccccCCCCCCEEEcCCCCCCCc--hhhcCCCCCcEEEccccccc
Q 005747 444 VINVSYMNLL--SLPSSLGLLSNLQTLSLYNCKLLDI--TVIRDLKKLEVLCLRGSDIK 498 (679)
Q Consensus 444 ~L~l~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~i~ 498 (679)
.++.++++++ .+|..+. .+|+.|+|++|.|+.+ ..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777777 7775433 4677777777777773 44667777777777777654
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.27 E-value=0.017 Score=58.72 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 225 (679)
-+++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++..... .+..+....+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4689999999999999999998875433 2368999998877644 25566654321 1112222233333
Q ss_pred H-HcCCceEEEEecCC
Q 005747 226 L-KKEKRILVILDNIW 240 (679)
Q Consensus 226 l-~~~k~~LlVlDdv~ 240 (679)
+ ..++.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 3 23455689999874
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.23 E-value=0.0061 Score=68.42 Aligned_cols=173 Identities=14% Similarity=0.207 Sum_probs=82.4
Q ss_pred CcccccchHHHHHHHHHHhc----------C---CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 128 DYEAFESRMSILNEITDALK----------N---GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~----------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
....+.|-++.+++|.+.+. . ...+-|.++|++|.|||.+|+++++..... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc---
Confidence 34456677777777766543 0 123457899999999999999999987532 333321
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCccc----------------hhhcCCCCC--CCC
Q 005747 195 IRKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGNLD----------------LKAAGIPHG--DDH 256 (679)
Q Consensus 195 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 256 (679)
.++ + ..+..++ ...+..+.+..++..+.+|++|+++.... ...+...+. ...
T Consensus 545 -~~l----~----s~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 -PEL----L----TMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -HHH----H----TTTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -chh----h----ccccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 111 1 1112222 23455666666667789999999853210 111111111 111
Q ss_pred CCcEEEEeecCcchhccc----CCCcceEEecCCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCC
Q 005747 257 RGCKVLLTARSLDTLSTK----MDSQKNFSVSFLKEEEAWSLFKKMAGDYVEGNELKEVARDVAKECAGL 322 (679)
Q Consensus 257 ~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~gl 322 (679)
.+--||-||...+.+... ..-...+.+...+.++-.++|+..........+. -...+++.+.|+
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 222233355443333211 1345678887777777778887766533222211 123455555553
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.22 E-value=0.019 Score=58.66 Aligned_cols=84 Identities=25% Similarity=0.287 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 225 (679)
.+++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++..... ....+....+.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4589999999999999999988775432 2468999998877654 25566654321 1122222223333
Q ss_pred HH-cCCceEEEEecCCC
Q 005747 226 LK-KEKRILVILDNIWG 241 (679)
Q Consensus 226 l~-~~k~~LlVlDdv~~ 241 (679)
+. .+..-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 33 34456999998743
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.22 E-value=0.019 Score=54.60 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLG 207 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~ 207 (679)
.+++|+|++|+|||||++.++...... -..++|+.... ...++...+ ..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~ 74 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFN 74 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhc
Confidence 689999999999999999998665432 12466766544 344444433 2444
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.02 E-value=0.032 Score=52.87 Aligned_cols=90 Identities=26% Similarity=0.320 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCC----------ccc--
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND----KLFDQVVFSEVSESQDIRKIQREIADKLGLKFD----------EES-- 214 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~----------~~~-- 214 (679)
-.+++|+|++|+|||||++.++...... ..-..++|+.....+....+ ..+.+.++.... ...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHH-HHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3689999999999999999998753321 11345888877665444432 334444443211 001
Q ss_pred -hhHHHHHHHHHHH-----cCCceEEEEecCCC
Q 005747 215 -ESGRARRLHDRLK-----KEKRILVILDNIWG 241 (679)
Q Consensus 215 -~~~~~~~l~~~l~-----~~k~~LlVlDdv~~ 241 (679)
.......+...+. ..++-++|+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 0111233333343 45677999998754
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.93 E-value=0.027 Score=55.68 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=47.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLKFDEESESGRARRLHDRLKK 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 228 (679)
..++++++|.+|+||||++..++....... -..+.+++.... ....+.+....+..+.+.........+......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 457999999999999999999988765311 124566655432 2233334444444444322111112222222223
Q ss_pred CCceEEEEec
Q 005747 229 EKRILVILDN 238 (679)
Q Consensus 229 ~k~~LlVlDd 238 (679)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 2345788884
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.0083 Score=55.82 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 134 SRMSILNEITDALKN---GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 134 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|++.++.+.+.+.. ....+|+|.|..|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356677777777653 3457999999999999999999988654
No 266
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.87 E-value=0.0087 Score=58.41 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 130 EAFESRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
..++|++..+.++.+.+. ......|.|+|.+|+|||++|+.+++...... ...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCCC
Confidence 457788888887776654 22335678999999999999999998754321 22455666543
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.032 Score=56.75 Aligned_cols=57 Identities=28% Similarity=0.341 Sum_probs=38.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----CeEEEEEcCCCcCHHHHHHHHHHHhCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLF----DQVVFSEVSESQDIRKIQREIADKLGL 208 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~l~~~i~~~l~~ 208 (679)
-+++.|+|+.|+|||||++.++......... ..++|++....+...++ ..+++.++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~ 191 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGL 191 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCC
Confidence 4699999999999999999999875211001 24589988776554443 335554443
No 268
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.70 E-value=0.021 Score=59.57 Aligned_cols=88 Identities=22% Similarity=0.407 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCC--------CCCccchhHH----
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGL--------KFDEESESGR---- 218 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~--------~~~~~~~~~~---- 218 (679)
+.++|+|.+|+|||||++.+........ -+.++++.+.+.. ...++..++.+.-.. ...+.+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999988755431 2445666666543 345555545332100 0111111111
Q ss_pred -HHHHHHHHH--cCCceEEEEecCC
Q 005747 219 -ARRLHDRLK--KEKRILVILDNIW 240 (679)
Q Consensus 219 -~~~l~~~l~--~~k~~LlVlDdv~ 240 (679)
...+-+++. +++++|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 123444444 4899999999984
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.69 E-value=0.01 Score=55.52 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 137 SILNEITDALKN--GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 137 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+.+++|.+.+.. ....+|+|+|++|.|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666652 4567999999999999999999988765
No 270
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.51 E-value=0.01 Score=59.93 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCCeEEEEEcCCCc-CHHHHHHHHHHHhCC----CCCcc
Q 005747 141 EITDALK-NGDVNTLGIYGIGGIGKTTLAKEVARRAEND-KLFDQVVFSEVSESQ-DIRKIQREIADKLGL----KFDEE 213 (679)
Q Consensus 141 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~----~~~~~ 213 (679)
+.++.+. =..-..++|+|.+|+|||||++.+.+....+ ..++ ++++-+.+.. .+.++. +.+.. .....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~----~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQ----RLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHH----TTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHH----HHhCeEEEEeCCCC
Confidence 3444443 2334689999999999999999988765432 1233 3456666543 223322 22211 00111
Q ss_pred chhHH------HHHHHHHHH-cCCceEEEEecCCCc
Q 005747 214 SESGR------ARRLHDRLK-KEKRILVILDNIWGN 242 (679)
Q Consensus 214 ~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 242 (679)
+.... +-.+-+++. +|+.+||++||+...
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11111 112223332 589999999998543
No 271
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.47 E-value=0.011 Score=59.05 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
++.+||+|.|-|||||||.+..+.--.... -..+.-|++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 467999999999999999998888776543 224666776643
No 272
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.40 E-value=0.023 Score=57.50 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|+++.++.+...+..+ .-+.++|++|+|||++|+.+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5679999888888877653 3588999999999999999998764
No 273
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.39 E-value=0.038 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999884
No 274
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.32 E-value=0.0094 Score=60.82 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 127 KDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.....++|.+..++.+..........-+.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 44567889988766654444333334488999999999999999998764
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.32 E-value=0.0099 Score=53.93 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.28 E-value=0.12 Score=53.72 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998876543
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.063 Score=51.37 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQRE 201 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 201 (679)
-.++.|.|.+|+||||+|.+++...... -..++|++.... ..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH
Confidence 3589999999999999998887665432 245778876553 3444433
No 278
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.24 E-value=0.13 Score=51.25 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=39.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
-.++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999999988765442 568887766 4567777776654
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.17 E-value=0.087 Score=52.48 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
...+|+|.|+.|+||||+++.+..-......-..+..+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3559999999999999999999876542100123555555543
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.16 E-value=0.012 Score=52.91 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998764
No 281
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.15 E-value=0.019 Score=54.26 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 136 MSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 136 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33445555555556678999999999999999999988754
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.013 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 283
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.04 E-value=0.13 Score=53.53 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVS 190 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 190 (679)
..++|.++|.+|+||||++..++......+ ..+..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecC
Confidence 367999999999999999999988765432 234455543
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.03 E-value=0.014 Score=54.03 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|.|+|+.|+||||+++.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.02 E-value=0.21 Score=52.14 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
..++|.++|.+|+||||++..++.....+. -..+..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 467999999999999999999998776431 12355666553
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.97 E-value=0.014 Score=52.59 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEV 171 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v 171 (679)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 287
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.88 E-value=0.058 Score=66.18 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----c-chhHHHHHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----E-SESGRARRLH 223 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~-~~~~~~~~l~ 223 (679)
..++|.|+|++|+|||+||.++....... -..++|+++...++... ++.+|.+.+. . +.......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999999998875543 34688999888877665 5566643211 1 2223333333
Q ss_pred HHHHcCCceEEEEecCC
Q 005747 224 DRLKKEKRILVILDNIW 240 (679)
Q Consensus 224 ~~l~~~k~~LlVlDdv~ 240 (679)
....+.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 34455678899999984
No 288
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.02 Score=53.96 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 134 SRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+..+..+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444555555555555678999999999999999999988754
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.85 E-value=0.018 Score=53.37 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.....+|+|+|++|.||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998865
No 290
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.85 E-value=0.23 Score=48.98 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC-HHHHHHHHHHHhCCCCCc----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD-IRKIQREIADKLGLKFDE----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 225 (679)
.++++++|.+|+||||++..++...... -..+.+++...... ..+.++...+..+.+... .+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998876543 23466666553322 223334445555554211 1222233344445
Q ss_pred HHcCCceEEEEecC
Q 005747 226 LKKEKRILVILDNI 239 (679)
Q Consensus 226 l~~~k~~LlVlDdv 239 (679)
+..+..=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222237888864
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.017 Score=53.51 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445799999999999999999998876
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.84 E-value=0.13 Score=51.05 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=47.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH--HHHHHHHHHhCCCCCcc---chh-HH-HHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR--KIQREIADKLGLKFDEE---SES-GR-ARRL 222 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~l~~~i~~~l~~~~~~~---~~~-~~-~~~l 222 (679)
...+|.|+|.+|+||||++..++...... -..+.+++... +... +-+...++..+.+.... .+. .. ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35699999999999999999999876543 22355555432 2222 22234455555432111 111 11 1223
Q ss_pred HHHHHcCCceEEEEecCC
Q 005747 223 HDRLKKEKRILVILDNIW 240 (679)
Q Consensus 223 ~~~l~~~k~~LlVlDdv~ 240 (679)
...+. ...-++|+|-.-
T Consensus 180 ~~a~~-~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALA-RNKDVVIIDTAG 196 (306)
T ss_dssp HHHHH-TTCSEEEEEECC
T ss_pred HHHHh-cCCCEEEEECCC
Confidence 33333 344588888653
No 293
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.82 E-value=0.075 Score=55.58 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=58.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCC-------C-------Cccch
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLK-------F-------DEESE 215 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~-------~~~~~ 215 (679)
-+-++|.|.+|+|||+|++.+.+..... +-+.++|+-+.+.. ...++.+++.+.-... . ..++.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 3568999999999999999999876432 34677888777654 5667777776542221 0 01111
Q ss_pred h------HHHHHHHHHHH--cCCceEEEEecCCC
Q 005747 216 S------GRARRLHDRLK--KEKRILVILDNIWG 241 (679)
Q Consensus 216 ~------~~~~~l~~~l~--~~k~~LlVlDdv~~ 241 (679)
. .....+-++++ +|+.+|+++||+..
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1 12334455555 38999999999743
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.81 E-value=0.017 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 295
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.81 E-value=0.016 Score=53.17 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
..+++|+|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.79 E-value=0.015 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 297
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.79 E-value=0.018 Score=61.41 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 131 AFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.++|+++.++.+...+..+ .-|.++|++|+|||+||+.+++....
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 4679998888888777644 36889999999999999999987643
No 298
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.73 E-value=0.17 Score=52.65 Aligned_cols=99 Identities=20% Similarity=0.345 Sum_probs=61.7
Q ss_pred HHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCc-CHHHHHHHHHHHhCCC------C---
Q 005747 142 ITDALK-NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQ-DIRKIQREIADKLGLK------F--- 210 (679)
Q Consensus 142 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~------~--- 210 (679)
.++.+. =..-+-++|.|.+|+|||+|++.+.+.... .+-+.++|+-+.+.. ...++.+++.+.-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 444443 123457899999999999999999987643 224667777777654 4566777776543221 0
Q ss_pred ----CccchhH------HHHHHHHHHH--cCCceEEEEecCCC
Q 005747 211 ----DEESESG------RARRLHDRLK--KEKRILVILDNIWG 241 (679)
Q Consensus 211 ----~~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 241 (679)
...+... ....+-+++. +|+.+||++||+..
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0111111 1233445554 48999999999753
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.70 E-value=0.018 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 300
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.70 E-value=0.035 Score=55.70 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 135 RMSILNEITDALK----NGDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 135 r~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-+...+++++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3444555555543 55567799999999999999999988754
No 301
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.69 E-value=0.028 Score=57.58 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 131 AFESRMSILNEITDALK-------------N--GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35788888888887772 1 1345789999999999999999998874
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.66 E-value=0.33 Score=51.50 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEV 189 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 189 (679)
..++|+|+|.+|+||||++..++......+ ..+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 356999999999999999999987765431 23555554
No 303
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.64 E-value=0.036 Score=50.61 Aligned_cols=112 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC---cCHHHHHHHHHHHhCCC---------CCccc---h
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES---QDIRKIQREIADKLGLK---------FDEES---E 215 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~l~~~i~~~l~~~---------~~~~~---~ 215 (679)
...|.|++..|.||||.|-...-+.... --.+.++...+. .....+ ++.++.. +.... +
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHH
Confidence 3466777777799999999988886543 234666654442 223333 3333211 11111 1
Q ss_pred hH----HHHHHHHHHHcCCceEEEEecCCCc-----cchhhcCCCCCCCCCCcEEEEeecCc
Q 005747 216 SG----RARRLHDRLKKEKRILVILDNIWGN-----LDLKAAGIPHGDDHRGCKVLLTARSL 268 (679)
Q Consensus 216 ~~----~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~ 268 (679)
.. ......+.+..++-=|||||++-.. ...+.+...+.....+.-||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11 1223333444455559999997332 11222222222233456799999974
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.60 E-value=0.037 Score=54.49 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=34.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCC-CCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAENDK-LFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
....+|+|+|..|+||||||+.+........ ....+..|......-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4567999999999999999999888765321 022344445554433334444443
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.58 E-value=0.022 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+|+|+|+.|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998754
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.57 E-value=0.018 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
|.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987754
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.52 E-value=0.018 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.49 E-value=0.017 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997754
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.44 E-value=0.021 Score=51.90 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 310
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.43 E-value=0.41 Score=47.88 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=37.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCC
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIADKLGLK 209 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~ 209 (679)
....+++|+|+.|+||||+++.++....... ..+.++...-. ....+-++...+.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCce
Confidence 3467999999999999999999998765431 23444443321 23334445556666643
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.42 E-value=0.022 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.40 E-value=0.026 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.40 E-value=0.021 Score=53.16 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|.|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.39 E-value=0.023 Score=52.08 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998653
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.38 E-value=0.025 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.37 E-value=0.029 Score=50.67 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 317
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.36 E-value=0.01 Score=67.60 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=81.4
Q ss_pred cccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 129 YEAFESRMSILNEITDALKN-------------GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
...+.|.++.++.+.+.+.- ...+.+.++|++|+||||||+.++...... | +.+..+.-.+
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~---i~v~~~~l~~- 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--F---ISIKGPELLT- 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--C---CCCCCSSSTT-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--E---EEEechHhhh-
Confidence 44566777777777766541 123568899999999999999999987532 2 1122221100
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHHHHHcCCceEEEEecCCCc----------------cchhhcCCCCCC--CCC
Q 005747 196 RKIQREIADKLGLKFDEESESGRARRLHDRLKKEKRILVILDNIWGN----------------LDLKAAGIPHGD--DHR 257 (679)
Q Consensus 196 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~ 257 (679)
..... .......+.+......+.+|++|++... .....+...+.. ...
T Consensus 550 -------------~~~g~-~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 550 -------------MWFGE-SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -------------CCTTT-SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred -------------hhcCc-cHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 00011 1123334444444345678889987431 011222222221 112
Q ss_pred CcEEEEeecCcchhcccC----CCcceEEecCCChHHHHHHHHHHhC
Q 005747 258 GCKVLLTARSLDTLSTKM----DSQKNFSVSFLKEEEAWSLFKKMAG 300 (679)
Q Consensus 258 gs~iivTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 300 (679)
+..||.||...+.+.... .....+.+...+.++..++++....
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 334555665433332211 1234677788888888888877664
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.34 E-value=0.025 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++|.|.|+.|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 319
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.33 E-value=0.027 Score=51.73 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..++|+|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997653
No 320
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.33 E-value=0.16 Score=50.03 Aligned_cols=87 Identities=25% Similarity=0.332 Sum_probs=48.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC-HHHHHHHHHHHhCCCCCc----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD-IRKIQREIADKLGLKFDE----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 225 (679)
.++++++|.+|+||||++..++...... -..+.+++...... ....+....+..+...-. .............
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999876543 23455665543221 111233445555543221 1122222333444
Q ss_pred HHcCCceEEEEecC
Q 005747 226 LKKEKRILVILDNI 239 (679)
Q Consensus 226 l~~~k~~LlVlDdv 239 (679)
+.....=++|+|-.
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43223457888875
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.32 E-value=0.027 Score=50.28 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..++++|+|..|+||||++..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999987654
No 322
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.32 E-value=0.038 Score=56.92 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 323
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.27 E-value=0.021 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998764
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.25 E-value=0.026 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.24 E-value=0.023 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.24 E-value=0.029 Score=50.26 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998765
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.22 E-value=0.045 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.22 E-value=0.027 Score=51.05 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.21 E-value=0.094 Score=52.21 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
....+|+|+|+.|+|||||++.+..-......-..+.+|.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 3456999999999999999999988764321012355665443
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.15 E-value=0.028 Score=52.52 Aligned_cols=27 Identities=41% Similarity=0.444 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988654
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.14 E-value=0.035 Score=50.67 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
...|.|+|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.13 E-value=0.03 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.12 E-value=0.031 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 334
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.10 E-value=0.022 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVA 172 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~ 172 (679)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.08 E-value=0.034 Score=50.78 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
...+|.|.|+.|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988654
No 336
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.06 E-value=0.024 Score=53.31 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=60.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCccchhHHHHHHHHHHHc-
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDEESESGRARRLHDRLKK- 228 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 228 (679)
.-.++.|+|..|.||||++..+..+...+. ..++.+...... + ....+++.+|........ .....+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 346889999999999999999888876542 234455433321 1 222455555544322111 112234444432
Q ss_pred ---CCceEEEEecCCCc--cchhhcCCCCCCCCCCcEEEEeecCc
Q 005747 229 ---EKRILVILDNIWGN--LDLKAAGIPHGDDHRGCKVLLTARSL 268 (679)
Q Consensus 229 ---~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~ 268 (679)
++.-+||+|.+... +.++.+.. +.+ .|-.||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 33459999998643 22222211 111 266788888853
No 337
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.05 E-value=0.26 Score=51.04 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHH--HHHHHHHHhCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRK--IQREIADKLGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~--l~~~i~~~l~~~ 209 (679)
.+++.++|.+|+||||++..++...... -..+..++.. .+.... .+....+..+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc-ccCchhHHHHHHhcccCCcc
Confidence 4689999999999999999999887643 2335555543 333322 233444455543
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.05 E-value=0.035 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.02 E-value=0.035 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.02 E-value=0.033 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999885
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.99 E-value=0.034 Score=53.65 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988654
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.94 E-value=0.033 Score=52.71 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|+|+.|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 343
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.89 E-value=0.032 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.88 E-value=0.028 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.85 E-value=0.037 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 346
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.85 E-value=0.032 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|+.|+|||||++.+..-..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 347
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.81 E-value=0.039 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|+|+.|+||||+++.+++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997764
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.78 E-value=0.037 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.77 E-value=0.033 Score=50.06 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.77 E-value=0.035 Score=51.70 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.72 E-value=0.038 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344689999999999999999999875
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.69 E-value=0.041 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..|.+.|+.|+||||+++.+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988653
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.66 E-value=0.041 Score=53.40 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 354
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.66 E-value=0.032 Score=52.53 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 355
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.64 E-value=0.044 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999998754
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.64 E-value=0.031 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.60 E-value=0.049 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|.|.|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 358
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.60 E-value=0.095 Score=54.24 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=54.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccC--CCCCeEEEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccchhH----
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEND--KLFDQVVFSEVSES-QDIRKIQREIADKLGLK-------FDEESESG---- 217 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 217 (679)
+-++|.|.+|+|||+|+.++.+..... +.-..++|+-+.+. ....++.+++.+.=... ....+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 347899999999999999999886542 11114666666643 35566666654431111 11111111
Q ss_pred --HHHHHHHHHH--cCCceEEEEecCCC
Q 005747 218 --RARRLHDRLK--KEKRILVILDNIWG 241 (679)
Q Consensus 218 --~~~~l~~~l~--~~k~~LlVlDdv~~ 241 (679)
....+-+++. .|+.+|+++||+..
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1234556666 38999999999853
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.55 E-value=0.042 Score=54.49 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
...+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999987654
No 360
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.53 E-value=0.04 Score=51.83 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|++|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988754
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.52 E-value=0.044 Score=52.90 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997754
No 362
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.52 E-value=0.038 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 363
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.48 E-value=0.077 Score=52.86 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
....++|+|+|-||+||||+|..++...... -..++.|+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 4567899999999999999999998887654 235777776643
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.48 E-value=0.051 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..++|.|.|++|+||+|.|+.+++...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999999998764
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.46 E-value=0.046 Score=50.03 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.44 E-value=0.049 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 367
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.44 E-value=0.036 Score=55.94 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=34.1
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCCeEEEEEcCCC
Q 005747 141 EITDALKN-GDVNTLGIYGIGGIGKTTLAKEVARRAEND-KLFDQVVFSEVSES 192 (679)
Q Consensus 141 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~ 192 (679)
+.++.+.. ..-+-++|+|.+|+|||+|++.+.+..... ..+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45566552 334678999999999999999999875432 1233 345666543
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.41 E-value=0.093 Score=50.22 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.....|.|.|+.|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999987753
No 369
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.38 E-value=0.052 Score=56.54 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 131 AFESRMSILNEITDALKN--------------GDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467888888877666521 13456889999999999999999988753
No 370
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.38 E-value=0.048 Score=60.03 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=41.1
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 126 NKDYEAFESRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344567889999998888877655 58899999999999999999987643
No 371
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.36 E-value=0.05 Score=52.22 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998864
No 372
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.34 E-value=0.035 Score=49.90 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
++++|+|.+|+|||||++.+..-....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 689999999999999999998876543
No 373
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.33 E-value=0.61 Score=49.00 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD 194 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 194 (679)
..+++|+|.+|+||||+++.++...... .+.+++.-.+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 5699999999999999999998876532 2334444344443
No 374
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.33 E-value=0.069 Score=48.98 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 139 LNEITDALKN-GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 139 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+..+..++.. ...+.+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445555543 1234799999999999999999998864
No 375
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.32 E-value=0.072 Score=55.47 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=55.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCC--CCeEEEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccchhH----
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKL--FDQVVFSEVSES-QDIRKIQREIADKLGLK-------FDEESESG---- 217 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~~~~---- 217 (679)
+-++|.|.+|+|||+|+.++++.....+. =+.++++-+.+. ....++.+++.+.=... ....+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45778899999999999999998764321 134666666554 34566666665432111 11111111
Q ss_pred --HHHHHHHHHH--cCCceEEEEecCC
Q 005747 218 --RARRLHDRLK--KEKRILVILDNIW 240 (679)
Q Consensus 218 --~~~~l~~~l~--~~k~~LlVlDdv~ 240 (679)
....+-+++. +|+.+|+++||+.
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 1234455555 5899999999964
No 376
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.31 E-value=0.054 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998764
No 377
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.30 E-value=0.065 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988754
No 378
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.27 E-value=0.052 Score=49.74 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 379
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.21 E-value=0.054 Score=49.69 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...+|+|.|+.|+||||+++.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 380
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.20 E-value=0.24 Score=60.03 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc------cchhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE------ESESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 224 (679)
-.++.|.|.+|+||||||.+++...... -..++|++.....+.. +++.++..... .+.......+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 4689999999999999999998876543 2358888887766543 26667654221 122222222322
Q ss_pred HHHcCCceEEEEecCCCc
Q 005747 225 RLKKEKRILVILDNIWGN 242 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~~~ 242 (679)
.....+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 223456779999998643
No 381
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.18 E-value=0.055 Score=50.46 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..+|+|.|+.|+||||+++.+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.17 E-value=0.053 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...|.|.|+.|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998653
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.17 E-value=0.14 Score=46.95 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988643
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.14 E-value=0.05 Score=51.28 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.10 E-value=0.06 Score=50.28 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..+|+|.|+.|+||||+|+.+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988654
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.05 E-value=0.032 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|.|..|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998764
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.99 E-value=0.058 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|.|||||.+.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999998653
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.99 E-value=0.064 Score=48.27 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++++|+|..|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999988754
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.92 E-value=0.063 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 390
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.91 E-value=0.34 Score=48.53 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
.++.|.|.+|+||||+|..++...... -..++|++.. -+..++...++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 589999999999999999999886542 2457776654 4566777666544
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.88 E-value=0.051 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988754
No 392
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.86 E-value=0.15 Score=52.83 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=53.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccC--------CCCC-eEEEEEcCCC-cCHHHHHHHHHHHhCCC-------CCccc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAEND--------KLFD-QVVFSEVSES-QDIRKIQREIADKLGLK-------FDEES 214 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~v~~~-~~~~~l~~~i~~~l~~~-------~~~~~ 214 (679)
+-++|.|.+|+|||+|+.++++..... ++-+ .++|+-+.+. ....++.+++.+.=... ....+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999999886541 1112 4566666643 34556666544321011 11111
Q ss_pred hhH------HHHHHHHHHH--cCCceEEEEecCCC
Q 005747 215 ESG------RARRLHDRLK--KEKRILVILDNIWG 241 (679)
Q Consensus 215 ~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 241 (679)
... ....+-+++. +|+.+|+++||+..
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 1234556665 38999999999753
No 393
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.82 E-value=0.56 Score=49.24 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
..++.|.|.+|+||||+|..++....... -..++|++... +..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHH
Confidence 35899999999999999999998765321 23577776653 466677666543
No 394
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.78 E-value=0.29 Score=59.35 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=60.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----c-chhHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----E-SESGRARRLHD 224 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~-~~~~~~~~l~~ 224 (679)
-++|-|+|+.|+||||||.++....... -...+|++.....+..- ++.+|...+. . ..+..+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999998765433 45689999988877763 7888877543 1 22333444444
Q ss_pred HHHcCCceEEEEecCC
Q 005747 225 RLKKEKRILVILDNIW 240 (679)
Q Consensus 225 ~l~~~k~~LlVlDdv~ 240 (679)
.++.+..-+||+|-|.
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 4556777899999874
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.76 E-value=0.066 Score=53.56 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 396
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.74 E-value=0.33 Score=59.71 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHHhCCCCCc-----cchhHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADKLGLKFDE-----ESESGRARRLHDR 225 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 225 (679)
-+++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++...+. ....+.+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4699999999999999999999886543 2468899888877754 26677764321 1122222222222
Q ss_pred H-HcCCceEEEEecCCC
Q 005747 226 L-KKEKRILVILDNIWG 241 (679)
Q Consensus 226 l-~~~k~~LlVlDdv~~ 241 (679)
+ ...+.-+||+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 2 345667999998753
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.73 E-value=0.12 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
....+|+|.|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.69 E-value=0.19 Score=49.66 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK 205 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~ 205 (679)
-.+++|+|.+|+|||||++.++....... -..++|+.... +..++...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 35899999999999999999988765431 11466766543 344555554443
No 399
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.68 E-value=0.07 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.68 E-value=0.059 Score=51.73 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.+|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.67 E-value=0.076 Score=49.56 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988764
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.67 E-value=0.069 Score=49.40 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 403
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.63 E-value=0.054 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|+|||||.+.+.--.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999997644
No 404
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.62 E-value=0.043 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVA-RRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 175 (679)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 543
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.61 E-value=0.22 Score=50.66 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 139 LNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 139 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
...+++.+. ..+..+|+|+|.+|+||||++..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444443 456789999999999999999999877543
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.61 E-value=0.074 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 407
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.60 E-value=0.075 Score=48.05 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45889999999999999999998753
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.58 E-value=0.068 Score=52.97 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..+++|+|+.|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999987653
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.54 E-value=0.055 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.247 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
.+++|+|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999865
No 410
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.53 E-value=0.16 Score=51.23 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=35.7
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhc--cCCCCCeEEEEEcCCCcCH
Q 005747 146 LKNGDVNTLGIYGIGGIGKTTLAKEVARRAE--NDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 146 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~v~~~~~~ 195 (679)
+.+...+++.+.|.||+||||+|..++.... .. -..+.-|+.....+.
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCh
Confidence 3456678999999999999999999998776 33 235777777654333
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.51 E-value=0.055 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|+|||||.+.++--.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997643
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.46 E-value=0.081 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.45 E-value=0.074 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.673 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVAR 173 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~ 173 (679)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 414
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.44 E-value=0.31 Score=51.45 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
-.++.|.|.+|+||||+|..++....... -..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 35899999999999999999998765421 13577776554 4456666554
No 415
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.43 E-value=0.12 Score=51.62 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcC
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVS 190 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 190 (679)
..++|+|+|.+|+||||++..++...... -..+.+++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 35799999999999999999998876543 2345566544
No 416
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.36 E-value=0.19 Score=50.52 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=36.6
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH
Q 005747 146 LKNGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 146 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 196 (679)
+.+...+++.+.|-||+||||+|..++...... -..++-|+.....+..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 345567889999999999999999999887654 3457777777544433
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.32 E-value=0.084 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988764
No 418
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.29 E-value=0.23 Score=47.41 Aligned_cols=49 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREI 202 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 202 (679)
-.++.|.|.+|+|||++|.+++.....+ .-..++|++... +.+++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 3589999999999999999876543221 123466666554 455555444
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.29 E-value=0.08 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 420
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.22 E-value=0.066 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998754
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.21 E-value=0.08 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 422
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.14 E-value=0.066 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
-.+++|+|+.|+|||||++.+.--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999764
No 423
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.10 E-value=0.067 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|+|||||.+.++--.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998643
No 424
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.09 E-value=0.08 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.07 E-value=0.082 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
.+++|+|+.|.|||||++.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.97 E-value=0.11 Score=49.38 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.96 E-value=0.11 Score=51.05 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..++|.|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999998743
No 428
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.94 E-value=0.65 Score=48.64 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIAD 204 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 204 (679)
-.++.|.|.+|+||||+|.+++.....+ -..++|++... +.+++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3589999999999999999999886654 23577776554 44455555544
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.94 E-value=0.073 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|.|||||.+.++--.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 430
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.94 E-value=0.57 Score=50.16 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=39.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHHH-hCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIADK-LGLK 209 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~-l~~~ 209 (679)
-.++.|.|.+|+||||+|.+++.....+. -..++|++... +.+++...++.. .+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 35889999999999999999998865431 23577777654 466777766543 4443
No 431
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.93 E-value=0.085 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
-.+++|+|+.|+|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.93 E-value=0.079 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|.|+|+.|+||||||..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999998653
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.91 E-value=0.092 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998764
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.88 E-value=0.075 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|+|||||.+.++--.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997643
No 435
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.87 E-value=0.074 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||++.+.--.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 436
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.85 E-value=0.077 Score=50.28 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|+.|.|||||.+.++.-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999987543
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.84 E-value=0.11 Score=48.29 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+|.|.|++|+||+|.|+.+++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.82 E-value=0.1 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 439
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.82 E-value=0.3 Score=51.65 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 134 SRMSILNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
+..+.++.+..++.+++ +.+.|.|.+|.||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45566677777776544 489999999999999999999886544
No 440
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.81 E-value=0.58 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
--++|.|++|+||||+|+.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.80 E-value=0.099 Score=52.99 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
..+++|+|+.|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999987653
No 442
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.79 E-value=0.066 Score=50.07 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|.|||||.+.++--.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999997653
No 443
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.78 E-value=0.086 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|+|||||++.++--.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999998653
No 444
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.78 E-value=0.06 Score=53.09 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988643
No 445
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.75 E-value=0.1 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.75 E-value=0.079 Score=50.81 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|.|||||++.++--.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997653
No 447
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.72 E-value=0.19 Score=48.84 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE 191 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 191 (679)
++|+|.|-||+||||+|..++...... -..++.|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 578889999999999999999887643 23567777654
No 448
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.69 E-value=0.081 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
-.+++|+|+.|.|||||.+.++--
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 449
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.66 E-value=0.13 Score=49.77 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
..++.+.|.||+||||++..+.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999997765
No 450
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.62 E-value=0.083 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||.+.++--.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998653
No 451
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.60 E-value=0.097 Score=48.46 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 139 LNEITDALKNGDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 139 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+.+.+.....+.-.|+|+|.+|+|||||+..+....
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333333334444568899999999999999988653
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.56 E-value=0.085 Score=51.02 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
-.+++|+|+.|.|||||++.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999764
No 453
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.51 E-value=0.46 Score=49.78 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhccCCCCCe-EEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CccchhHH--
Q 005747 151 VNTLGIYGIGGIGKTTLA-KEVARRAENDKLFDQ-VVFSEVSESQ-DIRKIQREIADKLGLKF-------DEESESGR-- 218 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~~-- 218 (679)
-+-++|.|.+|+|||+|| ..+.+... -+. ++|+-+.+.. ...++.+.+.+.-.... ..++...+
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 346889999999999995 57777642 343 4677776644 45666666654322211 11111111
Q ss_pred ----HHHHHHHHH-cCCceEEEEecCCC
Q 005747 219 ----ARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 219 ----~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
...+-+++. +|+.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 223444444 58999999999753
No 454
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.48 E-value=0.087 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||++.++--.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998653
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.43 E-value=0.11 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 456
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.43 E-value=0.25 Score=51.78 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhccCCCCCe-EEEEEcCCCc-CHHHHHHHHHHHhCCC-------CCccchhH----
Q 005747 152 NTLGIYGIGGIGKTTLA-KEVARRAENDKLFDQ-VVFSEVSESQ-DIRKIQREIADKLGLK-------FDEESESG---- 217 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~---- 217 (679)
+-++|.|.+|+|||+|| ..+.+... -+. ++|+-+.+.. ...++.+.+.+.=... ...++...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999995 57776542 343 5677776644 4556666665421111 11111111
Q ss_pred --HHHHHHHHHH-cCCceEEEEecCCC
Q 005747 218 --RARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 218 --~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
....+-+++. +|+.+||++||+..
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1223444444 58999999999854
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.42 E-value=0.11 Score=50.24 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=55.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCC-CcCHHHHHHHHH--HHhCCCCCccchhHHHHHHHHH
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSE-SQDIRKIQREIA--DKLGLKFDEESESGRARRLHDR 225 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~--~~l~~~~~~~~~~~~~~~l~~~ 225 (679)
..-.+++|+|+.|+||||+++.+....... +...+++.-.. .+-.... ..+. ..++. +.......+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHHHHHHHHHH
Confidence 344699999999999999999988764321 12333322111 0000000 0000 00110 011223344555
Q ss_pred HHcCCceEEEEecCCCccchhhcCCCCCCCCCCcEEEEeecCcch
Q 005747 226 LKKEKRILVILDNIWGNLDLKAAGIPHGDDHRGCKVLLTARSLDT 270 (679)
Q Consensus 226 l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 270 (679)
+.. ++=+|++|+..+......+... ...|.-|++||...+.
T Consensus 95 L~~-~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LRE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHH-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred Hhh-CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 554 5678888998754433222111 1235668888876553
No 458
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.41 E-value=0.09 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|.|||||.+.++--.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987653
No 459
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.41 E-value=0.12 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44689999999999999999998766
No 460
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.34 E-value=0.092 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.299 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||.+.++--.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987643
No 461
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.30 E-value=0.092 Score=51.33 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||.+.++--.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.29 E-value=0.12 Score=45.91 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 463
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.23 Score=45.22 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 464
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.26 E-value=0.093 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.+++|+|+.|.|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 465
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.25 E-value=0.12 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+.|.++|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 466
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.24 E-value=0.3 Score=45.54 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
.|.+.|.||+||||+|..++......+ + .+.++++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCC
Confidence 478899999999999999888866432 2 3555566543
No 467
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.22 E-value=0.21 Score=49.06 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES 192 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 192 (679)
.++|+|.|-||+||||+|..++...... -..+..|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 3688889999999999999999887643 234667776543
No 468
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.22 E-value=0.44 Score=50.40 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=56.9
Q ss_pred HHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcC-HHHHHHHHHH----HhCCC------
Q 005747 142 ITDALK-NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQD-IRKIQREIAD----KLGLK------ 209 (679)
Q Consensus 142 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~l~~~i~~----~l~~~------ 209 (679)
.++.+. =..-+-++|.|..|+|||+|++++.+... -+.++|+-+.+... ..++.+++-+ ..+..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 444443 12345789999999999999999987633 35788888876554 4555555422 11100
Q ss_pred ----CCccchhHH------HHHHHHHHH-cCCceEEEEecCCC
Q 005747 210 ----FDEESESGR------ARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 210 ----~~~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
....+...+ ...+-+++. .|+.+||++|++..
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 011111111 123334443 48999999999864
No 469
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.18 E-value=0.23 Score=46.90 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
...|+|.|+.|+||||+++.+.+....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999998764
No 470
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.09 E-value=0.12 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997643
No 471
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.08 E-value=0.12 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 472
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.03 E-value=0.11 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005747 153 TLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 473
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.98 E-value=0.12 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998765
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.90 E-value=0.12 Score=50.58 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCC--------CCeEEEEEcCCC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKL--------FDQVVFSEVSES 192 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~v~~~ 192 (679)
-.++.|+|++|+|||||+..++........ -..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 368999999999999999999875443210 124667766554
No 475
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.85 E-value=0.22 Score=52.83 Aligned_cols=44 Identities=5% Similarity=-0.041 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 134 SRMSILNEITDALK--NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 134 gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
.|.+..+.+.+... .....+|.+.|++|+||||+|+.+......
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45555556666552 234578999999999999999999999864
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.85 E-value=0.72 Score=42.27 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHH
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIA 203 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 203 (679)
.|+|=|.-|+||||.++.+++.....+ ..+.+..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHh
Confidence 478899999999999999999876542 2344444333333444444444
No 477
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.83 E-value=0.24 Score=45.73 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=32.1
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHH
Q 005747 152 NTLGIY-GIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIR 196 (679)
Q Consensus 152 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 196 (679)
++|+|+ +-||+||||+|..++...... -..++.|+.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence 578888 579999999999999887653 2357788877554443
No 478
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.79 E-value=0.16 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4468999999999999999999873
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.79 E-value=0.12 Score=47.16 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
+.|.|.|++|+||||||..+..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998764
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.67 E-value=0.18 Score=47.98 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999988653
No 481
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.63 E-value=0.21 Score=52.35 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhccCCCCC-eEEEEEcCCCc-CHHHHHHHHHHHhCCC--------CCccchh----
Q 005747 152 NTLGIYGIGGIGKTTLA-KEVARRAENDKLFD-QVVFSEVSESQ-DIRKIQREIADKLGLK--------FDEESES---- 216 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~l~~~i~~~l~~~--------~~~~~~~---- 216 (679)
+-++|.|.+|+|||+|| ..+.+... -+ .++|+-+.+.. ...++.+.+.+.=... .++.+..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999995 57776542 34 35677776643 4455555543321111 1111111
Q ss_pred -HHHHHHHHHHH-cCCceEEEEecCCC
Q 005747 217 -GRARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 217 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
.....+-+++. +|+.+||++||+..
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 12223344443 58999999999753
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.62 E-value=0.15 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.092 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 149 GDVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
...++++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999764
No 483
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.56 E-value=0.14 Score=44.93 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 484
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.54 E-value=0.27 Score=46.94 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=30.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCH
Q 005747 154 LGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDI 195 (679)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 195 (679)
|+|.|-||+||||+|..++......+ ..++-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcCh
Confidence 66799999999999999999887542 45777777654443
No 485
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.53 E-value=0.12 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||.+.++--.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997543
No 486
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.50 E-value=0.35 Score=44.91 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHH
Q 005747 153 TLGIY-GIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRK 197 (679)
Q Consensus 153 vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 197 (679)
+|+|+ +-||+||||+|..++...... - .++.|+.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECCCCCCHHH
Confidence 56665 679999999999999887754 2 688888876654443
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.48 E-value=0.31 Score=45.62 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 005747 148 NGDVNTLGIYGIGGIGKTTLAKEVARRAEN 177 (679)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 177 (679)
......|.|.|..|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344578999999999999999999998765
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.48 E-value=0.48 Score=44.11 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAEND 178 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 178 (679)
...|.|-|+.|+||||+++.+.+.....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987653
No 489
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.46 E-value=0.41 Score=45.33 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEE
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSE 188 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 188 (679)
...|.|.|+.|+||||+++.+.+..... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999987653 355344443
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.45 E-value=0.14 Score=51.77 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
-.+++|+|+.|.|||||.+.++--..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35899999999999999999987543
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.43 E-value=0.15 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAE 176 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (679)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998754
No 492
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.38 E-value=0.76 Score=48.01 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhccCCCCC-eEEEEEcCCCc-CHHHHHHHHHHHhCCCC-------CccchhH---
Q 005747 151 VNTLGIYGIGGIGKTTLA-KEVARRAENDKLFD-QVVFSEVSESQ-DIRKIQREIADKLGLKF-------DEESESG--- 217 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-------~~~~~~~--- 217 (679)
-+-++|.|..|+|||+|+ ..+.+... -+ .++|+-+.+.. ...++.+.+.+.=.... ..++...
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 346889999999999996 56666422 23 35777777654 45666666554322211 1111111
Q ss_pred ---HHHHHHHHHH-cCCceEEEEecCCC
Q 005747 218 ---RARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 218 ---~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
....+-++++ +|+.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1223334443 58999999999854
No 493
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.37 E-value=0.16 Score=44.92 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
--|.|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.33 E-value=0.15 Score=46.18 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARR 174 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (679)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 495
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.31 E-value=0.56 Score=49.78 Aligned_cols=96 Identities=15% Similarity=0.275 Sum_probs=56.3
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCC-cCHHHHHHHHHH----HhCCCC----
Q 005747 141 EITDALK-NGDVNTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSES-QDIRKIQREIAD----KLGLKF---- 210 (679)
Q Consensus 141 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~----~l~~~~---- 210 (679)
+.++.|. =..-+-++|.|..|+|||+|++++.+... -+.++|+-+.+. ....++++++-+ ..|...
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rt 296 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERT 296 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGE
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccce
Confidence 3445554 22346789999999999999999988743 356777777654 344455444322 122110
Q ss_pred ------CccchhH------HHHHHHHHHH-cCCceEEEEecCC
Q 005747 211 ------DEESESG------RARRLHDRLK-KEKRILVILDNIW 240 (679)
Q Consensus 211 ------~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 240 (679)
...+... ....+-+++. .|+.+||++|++.
T Consensus 297 vvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 297 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0111111 1223344444 4889999999985
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.27 E-value=0.15 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 151 VNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
-.+++|+|+.|.|||||.+.+.--.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3689999999999999999998653
No 497
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.25 E-value=0.39 Score=50.36 Aligned_cols=91 Identities=14% Similarity=0.249 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhcc----CCCCC-eEEEEEcCCCc-CHHHHHHHHHHHhCCC-------CCccchh
Q 005747 151 VNTLGIYGIGGIGKTTLA-KEVARRAEN----DKLFD-QVVFSEVSESQ-DIRKIQREIADKLGLK-------FDEESES 216 (679)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~v~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~ 216 (679)
-+-++|.|.+|+|||+|| ..+.+.... .++-+ .++|+-+.+.. ...++.+.+.+.=... ...++..
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 356889999999999994 566666542 12233 46777777654 4566666665422111 1111111
Q ss_pred H------HHHHHHHHHH-cCCceEEEEecCCC
Q 005747 217 G------RARRLHDRLK-KEKRILVILDNIWG 241 (679)
Q Consensus 217 ~------~~~~l~~~l~-~~k~~LlVlDdv~~ 241 (679)
. ....+-+++. +|+.+||++||+..
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1 1223444444 58999999999854
No 498
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.22 E-value=0.47 Score=44.13 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccCCCCCeEEEEEcCCCcCHHHHHHHHHH
Q 005747 152 NTLGIYGIGGIGKTTLAKEVARRAENDKLFDQVVFSEVSESQDIRKIQREIAD 204 (679)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 204 (679)
..|.+-|..|+||||+++.+.+...... +..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999999876543 433344333322223444444443
No 499
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.20 E-value=0.12 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005747 150 DVNTLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34689999999999999999997643
No 500
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.13 E-value=0.16 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005747 153 TLGIYGIGGIGKTTLAKEVARRA 175 (679)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (679)
.|.++|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998763
Done!