Query 005748
Match_columns 679
No_of_seqs 352 out of 2230
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 13:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 99.9 4.8E-28 1E-32 277.3 11.0 371 221-634 114-545 (775)
2 COG0326 HtpG Molecular chapero 99.9 6.7E-22 1.5E-26 222.6 19.0 163 243-415 16-207 (623)
3 PRK05218 heat shock protein 90 99.8 6.2E-20 1.3E-24 211.0 23.4 306 236-626 7-351 (613)
4 PTZ00130 heat shock protein 90 99.8 7.4E-21 1.6E-25 220.5 13.8 198 201-416 41-270 (814)
5 PRK14083 HSP90 family protein; 99.8 2.7E-19 5.9E-24 204.6 23.1 299 242-626 11-331 (601)
6 KOG1845 MORC family ATPases [C 99.8 3E-21 6.5E-26 221.8 4.7 319 292-678 1-339 (775)
7 PTZ00272 heat shock protein 83 99.8 5.4E-19 1.2E-23 204.4 14.4 163 242-415 13-204 (701)
8 KOG0019 Molecular chaperone (H 99.7 4.2E-17 9.1E-22 181.4 10.2 151 254-417 59-235 (656)
9 KOG0020 Endoplasmic reticulum 99.7 2.9E-17 6.4E-22 178.1 8.6 160 243-418 88-282 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 1E-17 2.2E-22 158.0 2.5 97 255-356 3-100 (137)
11 COG0323 MutL DNA mismatch repa 99.5 1.7E-12 3.8E-17 150.2 19.8 109 236-353 4-118 (638)
12 PRK00095 mutL DNA mismatch rep 99.5 3.3E-12 7.1E-17 147.8 21.2 109 236-353 3-117 (617)
13 TIGR00585 mutl DNA mismatch re 99.3 1.2E-11 2.6E-16 131.9 12.2 139 236-387 3-148 (312)
14 PF07496 zf-CW: CW-type Zinc F 99.2 1.2E-12 2.7E-17 103.8 0.1 35 644-678 1-37 (50)
15 COG1389 DNA topoisomerase VI, 99.1 2.1E-10 4.5E-15 125.4 10.3 137 251-392 33-184 (538)
16 KOG1979 DNA mismatch repair pr 98.9 3.3E-09 7.1E-14 118.5 9.6 140 235-386 7-152 (694)
17 KOG1978 DNA mismatch repair pr 98.8 4.9E-09 1.1E-13 119.5 8.2 106 238-352 3-114 (672)
18 PRK14868 DNA topoisomerase VI 98.8 6.8E-08 1.5E-12 112.5 13.9 95 253-353 45-149 (795)
19 PRK04184 DNA topoisomerase VI 98.7 9.6E-08 2.1E-12 108.6 13.1 96 255-353 37-142 (535)
20 TIGR01052 top6b DNA topoisomer 98.6 3.3E-07 7.1E-12 103.3 11.3 97 253-354 27-133 (488)
21 PRK05559 DNA topoisomerase IV 98.5 5.9E-07 1.3E-11 104.7 11.4 123 253-389 36-176 (631)
22 TIGR01055 parE_Gneg DNA topois 98.4 8.8E-07 1.9E-11 103.1 10.3 120 256-389 32-169 (625)
23 PRK14939 gyrB DNA gyrase subun 98.3 3E-06 6.5E-11 100.2 12.1 120 255-389 38-174 (756)
24 PRK05644 gyrB DNA gyrase subun 98.2 5.8E-06 1.3E-10 96.6 12.0 119 256-388 39-173 (638)
25 smart00433 TOP2c Topoisomerase 98.2 3.2E-06 6.9E-11 98.1 9.7 114 259-388 6-138 (594)
26 TIGR01059 gyrB DNA gyrase, B s 98.2 6.6E-06 1.4E-10 96.5 11.8 119 255-389 31-167 (654)
27 PF02518 HATPase_c: Histidine 98.2 8.8E-07 1.9E-11 79.2 3.4 90 254-351 5-99 (111)
28 PRK14867 DNA topoisomerase VI 98.2 5.2E-06 1.1E-10 96.5 9.6 94 255-353 37-140 (659)
29 KOG1977 DNA mismatch repair pr 97.9 5.8E-06 1.3E-10 94.5 3.6 105 239-353 5-115 (1142)
30 TIGR01058 parE_Gpos DNA topois 97.6 0.00022 4.7E-09 83.6 10.8 116 259-389 39-172 (637)
31 COG0187 GyrB Type IIA topoisom 97.6 0.00016 3.4E-09 83.2 9.0 154 259-437 41-212 (635)
32 PLN03128 DNA topoisomerase 2; 97.4 0.00062 1.3E-08 84.0 9.9 86 255-349 53-154 (1135)
33 PLN03237 DNA topoisomerase 2; 97.3 0.00095 2E-08 83.4 10.1 85 256-349 79-179 (1465)
34 COG3290 CitA Signal transducti 97.2 0.00068 1.5E-08 77.0 6.8 85 253-349 426-518 (537)
35 smart00387 HATPase_c Histidine 97.1 0.0009 1.9E-08 57.1 5.9 73 255-335 6-80 (111)
36 PHA02569 39 DNA topoisomerase 97.1 0.0013 2.9E-08 76.6 9.1 116 259-389 50-185 (602)
37 PRK10604 sensor protein RstB; 97.1 0.0013 2.7E-08 73.0 7.8 90 254-350 319-411 (433)
38 cd00075 HATPase_c Histidine ki 97.1 0.001 2.2E-08 55.8 5.5 85 257-350 3-93 (103)
39 PRK09470 cpxA two-component se 97.0 0.0016 3.6E-08 71.3 7.5 89 255-350 354-445 (461)
40 PRK10364 sensor protein ZraS; 96.9 0.002 4.2E-08 71.6 7.7 84 254-350 348-436 (457)
41 PRK09467 envZ osmolarity senso 96.9 0.0025 5.3E-08 69.7 7.6 87 254-349 331-420 (435)
42 PTZ00109 DNA gyrase subunit b; 96.9 0.0036 7.9E-08 75.1 9.4 117 259-389 134-307 (903)
43 PRK09303 adaptive-response sen 96.7 0.004 8.7E-08 68.1 8.1 92 255-352 273-367 (380)
44 TIGR01386 cztS_silS_copS heavy 96.7 0.0037 8E-08 68.2 7.8 88 254-348 353-445 (457)
45 TIGR02938 nifL_nitrog nitrogen 96.7 0.0036 7.8E-08 68.4 7.2 86 255-350 388-482 (494)
46 PRK11086 sensory histidine kin 96.6 0.0048 1E-07 69.1 8.0 82 255-349 434-522 (542)
47 PTZ00108 DNA topoisomerase 2-l 96.6 0.014 3E-07 73.4 12.5 122 255-389 58-203 (1388)
48 PRK11006 phoR phosphate regulo 96.6 0.0048 1E-07 68.0 7.8 90 254-350 317-411 (430)
49 COG0642 BaeS Signal transducti 96.6 0.0041 8.8E-08 62.9 6.3 60 253-318 227-287 (336)
50 PRK15053 dpiB sensor histidine 96.5 0.005 1.1E-07 69.7 7.4 85 255-349 433-526 (545)
51 TIGR02966 phoR_proteo phosphat 96.5 0.0079 1.7E-07 62.1 8.3 90 254-350 229-323 (333)
52 PRK11100 sensory histidine kin 96.5 0.0056 1.2E-07 67.0 7.0 89 254-350 368-461 (475)
53 PRK10549 signal transduction h 96.4 0.0087 1.9E-07 65.9 7.7 89 255-350 353-446 (466)
54 TIGR02916 PEP_his_kin putative 96.3 0.0074 1.6E-07 71.1 6.9 83 255-350 580-668 (679)
55 PRK10755 sensor protein BasS/P 96.1 0.0093 2E-07 63.7 6.2 87 254-351 247-338 (356)
56 PRK10815 sensor protein PhoQ; 96.0 0.012 2.7E-07 66.7 6.8 84 255-349 379-465 (485)
57 COG4191 Signal transduction hi 95.9 0.011 2.5E-07 67.9 5.7 58 254-317 497-559 (603)
58 PRK15347 two component system 95.7 0.022 4.7E-07 68.6 7.8 87 255-352 514-604 (921)
59 PRK11091 aerobic respiration c 95.7 0.022 4.7E-07 67.8 7.6 93 255-352 399-495 (779)
60 PRK10337 sensor protein QseC; 95.6 0.022 4.7E-07 62.7 6.7 83 255-349 353-438 (449)
61 PRK11360 sensory histidine kin 95.5 0.025 5.5E-07 63.3 6.8 84 255-351 501-590 (607)
62 PRK13837 two-component VirA-li 95.4 0.027 5.9E-07 68.0 7.1 90 255-351 561-664 (828)
63 PRK09835 sensor kinase CusS; P 95.3 0.041 8.9E-07 60.8 7.3 88 254-349 375-468 (482)
64 TIGR03785 marine_sort_HK prote 95.2 0.044 9.4E-07 65.3 7.8 89 255-350 598-691 (703)
65 TIGR01925 spIIAB anti-sigma F 95.2 0.049 1.1E-06 50.7 6.6 82 254-349 39-125 (137)
66 PRK11073 glnL nitrogen regulat 95.1 0.046 1E-06 57.9 6.8 89 255-350 238-336 (348)
67 PRK11466 hybrid sensory histid 95.1 0.049 1.1E-06 65.8 7.7 87 255-352 562-652 (914)
68 TIGR02956 TMAO_torS TMAO reduc 94.9 0.055 1.2E-06 65.7 7.6 89 254-352 579-673 (968)
69 PRK10547 chemotaxis protein Ch 94.9 0.061 1.3E-06 63.8 7.5 88 256-351 387-512 (670)
70 PRK10490 sensor protein KdpD; 94.8 0.051 1.1E-06 66.5 7.0 89 254-351 778-871 (895)
71 PRK10841 hybrid sensory kinase 94.5 0.083 1.8E-06 64.9 7.7 90 255-352 563-657 (924)
72 PRK11107 hybrid sensory histid 94.4 0.088 1.9E-06 63.4 7.7 95 255-352 409-508 (919)
73 KOG0787 Dehydrogenase kinase [ 94.2 0.11 2.3E-06 57.3 6.8 88 255-348 261-366 (414)
74 PRK10618 phosphotransfer inter 93.8 0.16 3.4E-06 62.3 8.1 92 255-352 566-662 (894)
75 PRK03660 anti-sigma F factor; 93.3 0.24 5.2E-06 46.5 6.8 45 254-304 39-88 (146)
76 PRK09959 hybrid sensory histid 93.2 0.19 4.2E-06 62.8 7.8 94 254-351 828-925 (1197)
77 TIGR01924 rsbW_low_gc serine-p 93.1 0.21 4.5E-06 48.6 6.2 85 254-348 42-131 (159)
78 PRK04069 serine-protein kinase 93.1 0.16 3.5E-06 49.4 5.4 52 255-312 43-99 (161)
79 PF13581 HATPase_c_2: Histidin 92.9 0.21 4.5E-06 45.6 5.6 78 254-346 31-113 (125)
80 COG4585 Signal transduction hi 92.8 0.12 2.6E-06 56.3 4.6 71 254-350 279-353 (365)
81 COG3850 NarQ Signal transducti 92.8 0.15 3.2E-06 58.5 5.2 76 255-353 482-559 (574)
82 COG0643 CheA Chemotaxis protei 92.2 0.35 7.6E-06 57.9 7.6 102 235-352 421-563 (716)
83 PRK13557 histidine kinase; Pro 91.8 0.31 6.7E-06 54.4 6.4 92 255-351 278-383 (540)
84 PRK11644 sensory histidine kin 90.3 0.27 5.8E-06 56.2 4.1 45 255-305 411-456 (495)
85 COG2972 Predicted signal trans 90.1 0.36 7.9E-06 54.6 4.9 54 254-311 350-407 (456)
86 COG2205 KdpD Osmosensitive K+ 90.1 0.79 1.7E-05 55.1 7.8 59 255-317 776-835 (890)
87 PF07744 SPOC: SPOC domain; I 90.1 0.17 3.7E-06 46.2 1.9 45 70-114 66-119 (119)
88 PRK10600 nitrate/nitrite senso 89.5 0.35 7.5E-06 55.8 4.2 47 254-306 469-516 (569)
89 COG3920 Signal transduction hi 89.3 0.39 8.6E-06 49.5 4.1 44 257-305 125-174 (221)
90 PRK13560 hypothetical protein; 86.3 0.64 1.4E-05 54.7 3.9 44 257-305 714-762 (807)
91 COG2172 RsbW Anti-sigma regula 86.1 1.5 3.2E-05 42.6 5.6 85 253-351 39-129 (146)
92 COG5000 NtrY Signal transducti 84.9 1.1 2.4E-05 52.3 4.8 52 255-312 601-661 (712)
93 COG4192 Signal transduction hi 83.9 1.9 4.2E-05 49.0 5.8 60 254-318 564-626 (673)
94 COG5002 VicK Signal transducti 79.1 2.4 5.3E-05 46.8 4.4 71 256-334 344-417 (459)
95 COG4564 Signal transduction hi 78.9 3.7 8.1E-05 45.1 5.7 74 257-353 358-439 (459)
96 PRK13559 hypothetical protein; 78.3 2.1 4.5E-05 45.8 3.7 47 255-305 268-319 (361)
97 smart00249 PHD PHD zinc finger 77.9 1.5 3.3E-05 32.6 1.8 33 642-674 10-45 (47)
98 COG4251 Bacteriophytochrome (l 77.4 3.2 7E-05 48.8 5.1 52 255-312 637-691 (750)
99 PRK10935 nitrate/nitrite senso 77.2 2.5 5.5E-05 48.0 4.2 46 255-305 472-518 (565)
100 COG3852 NtrB Signal transducti 64.4 9.4 0.0002 41.7 4.7 58 255-312 242-309 (363)
101 COG3851 UhpB Signal transducti 59.3 10 0.00022 42.3 3.9 44 255-304 411-455 (497)
102 PF00628 PHD: PHD-finger; Int 48.1 3.4 7.4E-05 32.2 -1.4 34 641-674 9-46 (51)
103 COG3275 LytS Putative regulato 46.1 24 0.00052 40.7 4.2 57 237-305 445-507 (557)
104 PRK13610 photosystem II reacti 37.9 14 0.0003 34.5 0.7 17 82-98 91-107 (113)
105 PF03912 Psb28: Psb28 protein; 37.7 12 0.00027 34.7 0.4 15 84-98 86-100 (108)
106 PLN00039 photosystem II reacti 37.2 16 0.00034 34.2 0.9 17 82-98 85-101 (111)
107 KOG0355 DNA topoisomerase type 36.2 1.2E+02 0.0027 37.2 8.2 45 255-307 54-102 (842)
108 PRK13612 photosystem II reacti 36.1 17 0.00036 34.1 0.9 17 82-98 87-103 (113)
109 TIGR03047 PS_II_psb28 photosys 36.0 18 0.00039 33.7 1.1 17 82-98 84-100 (109)
110 PRK13611 photosystem II reacti 35.6 17 0.00038 33.5 0.9 17 82-98 80-96 (104)
111 CHL00128 psbW photosystem II p 34.9 18 0.00039 33.9 0.9 17 82-98 87-103 (113)
112 PF14501 HATPase_c_5: GHKL dom 30.3 88 0.0019 27.6 4.6 41 255-301 6-51 (100)
113 COG2865 Predicted transcriptio 27.4 71 0.0015 36.9 4.2 67 254-334 270-351 (467)
114 cd00594 KU Ku-core domain; inc 24.9 79 0.0017 33.1 3.8 67 49-116 87-161 (272)
115 smart00559 Ku78 Ku70 and Ku80 23.4 89 0.0019 29.8 3.6 66 50-116 35-109 (140)
116 PF06540 GMAP: Galanin message 20.9 86 0.0019 26.4 2.4 34 68-102 11-44 (62)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.8e-28 Score=277.31 Aligned_cols=371 Identities=23% Similarity=0.284 Sum_probs=271.6
Q ss_pred CCCceeeecCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCCCEEEEE-
Q 005748 221 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII- 296 (679)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~p~~L~slst~~i~~~f~AIaELIDNS~DA---~At~V~I~I~~~~~~~~~~~~~~L~I~- 296 (679)
.++..+...+.++..+++++|+|||+++++| .|.++|++||+|||+|. +|+.+.|.-.. ...+.....+++.
T Consensus 114 ~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I~---p~~d~~i~a~~v~~ 189 (775)
T KOG1845|consen 114 LAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYIN---PVMDIFIRALVVQL 189 (775)
T ss_pred cccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeeec---ccccccceeEEeec
Confidence 3444446666666799999999999999999 79999999999999997 56665543221 1112223445555
Q ss_pred ----eCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceeeeeceeccceEEEEEeeC------CCCceeEEEEEec--
Q 005748 297 ----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN-- 364 (679)
Q Consensus 297 ----DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~------~~~s~~~ls~sf~-- 364 (679)
|||+||.++-+..+|.+|++.+. +-...+|+||+||+++.|++|.++.|++|.. ..+++|+++++|.
T Consensus 190 ~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~ 268 (775)
T KOG1845|consen 190 KRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRK 268 (775)
T ss_pred cceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecc
Confidence 78999999999999999998875 3467899999999999999999999999943 2578999999994
Q ss_pred CCCccEEEcC----cccCCC---CcEEEEEeccchhhhhhhhhh-----hhhhcCCCcch--hHHHh-------hcc---
Q 005748 365 QGKDNLEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEK-------AGL--- 420 (679)
Q Consensus 365 ~g~~~i~VPi----~~~e~~---Gt~I~l~~~~~~e~~~e~~L~-----~I~kySpF~s~--~I~e~-------~~~--- 420 (679)
++..+++||+ ...+.. -..|... .. ..+..++. .+++|+||.+. .+.+. +.+
T Consensus 269 t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~--s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~ 344 (775)
T KOG1845|consen 269 TGKRDFIVPMRLIKMDYEKSDQLWQGILYK--SG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH 344 (775)
T ss_pred ccCCceeEecchhhhhhhcccccccceeec--cc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence 5788999999 444431 1122221 11 12223333 39999999973 22220 001
Q ss_pred -cc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcC
Q 005748 421 -FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV 495 (679)
Q Consensus 421 -~~-~~~~GT~IiI~nLrr~~---~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYLSiLYL~ 495 (679)
+. ...+||.+|+||+++|. +-.++||+.+ +++|. -...++++.|.++||+.
T Consensus 345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~ 400 (775)
T KOG1845|consen 345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLT 400 (775)
T ss_pred hhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchh
Confidence 22 25799999999997763 3488888765 24442 02456889999999974
Q ss_pred --CCeEEEEcCeEecccchhhccccceee--cccccc-------eEEEEEEccccccc-ccccceEEEEEeCeeee----
Q 005748 496 --PRMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE---- 559 (679)
Q Consensus 496 --PrmkI~LnG~kV~~~~i~~~L~~~~v~--~~~~~~-------~~V~itiGf~k~e~-~~~~~Gi~vY~nnRLI~---- 559 (679)
+++.+.+.|+.+.++.+......+... .+.... .......||.+... ....+|+.|||++|||.
T Consensus 401 ~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~ 480 (775)
T KOG1845|consen 401 RRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCR 480 (775)
T ss_pred ccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccc
Confidence 799999999999999988876654321 111100 11122456665432 23456999999999999
Q ss_pred eeeeccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccc
Q 005748 560 AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVV 634 (679)
Q Consensus 560 ~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~~~~~~~~~~ 634 (679)
++||.++. ..+.++++++++..++ . +++|++|+|+.+-.-.+++.+..++++.||...|+.+++.
T Consensus 481 ~~~k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~ 545 (775)
T KOG1845|consen 481 PFVKIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEA 545 (775)
T ss_pred ceeeecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCcc
Confidence 99999985 5579999999999974 3 4699999999999889999999999999999999988765
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.7e-22 Score=222.57 Aligned_cols=163 Identities=25% Similarity=0.347 Sum_probs=129.0
Q ss_pred HHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 005748 243 YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (679)
Q Consensus 243 ~L~slst~~i~~~f~AIaELIDNS~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (679)
.|+.+..+.|+.....|+|||+||.||. ...+.|.|.. ++++.+|+|.|||+|||++|
T Consensus 16 ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DNGIGMT~~E 89 (623)
T COG0326 16 LLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDNGIGMTKDE 89 (623)
T ss_pred HHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeCCCCCCHHH
Confidence 4455566666666666999999999992 2356666653 34678999999999999999
Q ss_pred HHhhhh-cccCCC--------CC-CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcc
Q 005748 307 VVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 376 (679)
Q Consensus 307 L~~~l~-fG~S~k--------~~-~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~ 376 (679)
+++.++ .+.|.. .. .+...||||||||+||+| ++++|+|.||+.+..... .|.+ .|..+++|....
T Consensus 90 v~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~-~W~S--~g~g~ytv~~~~ 165 (623)
T COG0326 90 VIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAY-HWES--DGEGEYTVEDID 165 (623)
T ss_pred HHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcce-EEEE--cCCCceEEeecc
Confidence 999875 333321 11 357889999999999999 999999999999975444 6766 677889998887
Q ss_pred cCCC-CcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 377 YYRK-GQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 377 ~e~~-Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
-+.+ ||+|+|+++++. +++.+|.++. |.+||.|..+||.
T Consensus 166 ~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~ 207 (623)
T COG0326 166 KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIY 207 (623)
T ss_pred CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceE
Confidence 7774 999999998754 7899999976 8889999999886
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.85 E-value=6.2e-20 Score=210.96 Aligned_cols=306 Identities=21% Similarity=0.219 Sum_probs=191.5
Q ss_pred eeecCH-HHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeC
Q 005748 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 298 (679)
Q Consensus 236 ~~~v~p-~~L~slst~~i~~~f~AIaELIDNS~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (679)
.|.++- +.|..++.+.|+.+..+|+|||+||+||. +....|.|.. ..+...|.|.||
T Consensus 7 ~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~Dn 80 (613)
T PRK05218 7 EFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISDN 80 (613)
T ss_pred ehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEEC
Confidence 344444 45566687888899999999999999993 3455666542 223457999999
Q ss_pred CCCCCHHHHHhhh-hcccCCCC----------CCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCC
Q 005748 299 GHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (679)
Q Consensus 299 G~GMt~eeL~~~l-~fG~S~k~----------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 367 (679)
|+||+.+++...+ ..|.|.+. ..+...||+||+||+++++ +|++++|.||+.+....++.|.+ ++.
T Consensus 81 G~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~~~~~~~w~~--~g~ 157 (613)
T PRK05218 81 GIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGPAAEAVRWES--DGE 157 (613)
T ss_pred CCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCCCCceEEEEE--eCC
Confidence 9999999999865 46665321 1246789999999987554 99999999999774456788866 455
Q ss_pred ccEEEcCcccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHHhhccccCCCCCcEEEEEeccCCCCceeee
Q 005748 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLE 445 (679)
Q Consensus 368 ~~i~VPi~~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nLrr~~~~~eLd 445 (679)
..+.+...+-..+||+|+++++.+. ++.+.+.++. |.+||.|..+||.- . |+. |.+ -+....-
T Consensus 158 ~~~~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~-----~----~~~---~~~---in~~~~~ 222 (613)
T PRK05218 158 GEYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL-----E----KEE---EET---INSASAL 222 (613)
T ss_pred ceeEEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEE-----e----ccc---cee---ecCCccc
Confidence 5565544433468999999998765 5666777765 88999998876641 1 000 000 0001111
Q ss_pred ccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhh---cCCCeEEEEcCeEecccchhhccccceee
Q 005748 446 WDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIF---LVPRMKIYVQGSLVRSRPLAKSLNKTCVE 522 (679)
Q Consensus 446 F~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYLSiLY---L~PrmkI~LnG~kV~~~~i~~~L~~~~v~ 522 (679)
|... ..|+. +.-...|..-++ -+|-+.|.++..-
T Consensus 223 w~~~--------~~~i~-------------------~~~~~~fy~~~~~~~~~pl~~i~~~~e~---------------- 259 (613)
T PRK05218 223 WTRS--------KSEIT-------------------DEEYKEFYKHLAHDFDDPLFWIHNNVEG---------------- 259 (613)
T ss_pred eecC--------Ccccc-------------------HHHHHHHhhhhcccccCCcEEEEcccCC----------------
Confidence 1111 01110 111122222222 2344444432111
Q ss_pred cccccceEEEEEEcccccc----c-ccccceEEEEEeCeeeeee-eeccccccCCCCCceEEEEEecCcccccCCCceec
Q 005748 523 TGIIMGKSAHLTLGRCQLE----W-EQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWV 596 (679)
Q Consensus 523 ~~~~~~~~V~itiGf~k~e----~-~~~~~Gi~vY~nnRLI~~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~p 596 (679)
...++-.+++-... . .....|+.+|.|+|+|.-- ..+-|. .-+=|-|||+.+.| + |
T Consensus 260 -----~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~~~lLP~-----wl~Fv~GVVDs~dL-p-------l 321 (613)
T PRK05218 260 -----PFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDAEELLPE-----YLRFVKGVIDSEDL-P-------L 321 (613)
T ss_pred -----ceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCchhhhchH-----HHhheEEEeecCCC-C-------C
Confidence 01111122211110 0 1246899999999999754 335554 45667889999986 2 3
Q ss_pred ccCccCccCchHHHHHHHHHHHHHHHHHhh
Q 005748 597 HNNKQGFLDCEPYARLEEWLGKVADEYWDN 626 (679)
Q Consensus 597 thnKQdFe~t~~y~~L~~~L~e~l~eYw~~ 626 (679)
+-+...+.++..++++++.|.+++.++...
T Consensus 322 nvSRE~lq~~~~l~~i~~~l~~kv~~~l~~ 351 (613)
T PRK05218 322 NVSREILQEDRVVKKIRKAITKKVLDELEK 351 (613)
T ss_pred ccCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999888887766543
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=99.84 E-value=7.4e-21 Score=220.50 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=147.2
Q ss_pred CCCccccCCCCCcccccCCCCCCceeeecCCCCceeeecCHH-HHHHhhcccccCHHHHHHHHHhcccccCC--------
Q 005748 201 FSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKA-------- 271 (679)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~-~L~slst~~i~~~f~AIaELIDNS~DA~A-------- 271 (679)
-+|.|-.|.-|-+.|++.... . .......|...-+ .|+-+..+.|+....+|+|||+||.||.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~--~-----~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt 113 (814)
T PTZ00130 41 EKEEVKKDRDNIPEIEDGEKP--T-----SGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLS 113 (814)
T ss_pred CcchhhcccccCcccccCCCC--C-----cccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcC
Confidence 346667777777767665432 2 1122344666544 55666777888888889999999999964
Q ss_pred --------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCC---------CCCCCcccccCcee
Q 005748 272 --------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGF 333 (679)
Q Consensus 272 --------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~---------~~d~~~IG~fGvGf 333 (679)
..+.|.|.. +.+..+|+|.|||+|||++++.+.++ .++|... ..+...||||||||
T Consensus 114 ~~~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGF 187 (814)
T PTZ00130 114 DESVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGF 187 (814)
T ss_pred CchhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccch
Confidence 366777763 33567999999999999999988763 5554321 12467999999999
Q ss_pred eeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCccc---CCCCcEEEEEeccch-hhhhhhhhhh-hhhcCC
Q 005748 334 KTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSP 408 (679)
Q Consensus 334 KsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~---e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySp 408 (679)
+|++| +|++|.|.||+.+. .++.|.+ .|...+.|...+. ..+||+|+|+++++. ++...+.++. |.+||.
T Consensus 188 YSaFm-VAdkV~V~Trs~~~--~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~ 262 (814)
T PTZ00130 188 YSAFL-VADKVIVYTKNNND--EQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQ 262 (814)
T ss_pred hheee-ecCEEEEEEcCCCC--ceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhc
Confidence 99988 99999999998764 4688877 4556676654332 358999999999765 7888888876 889999
Q ss_pred CcchhHHH
Q 005748 409 FNKYLIGE 416 (679)
Q Consensus 409 F~s~~I~e 416 (679)
|..+||..
T Consensus 263 fI~~PI~l 270 (814)
T PTZ00130 263 FIQYPIYL 270 (814)
T ss_pred cCCCCEEE
Confidence 99998863
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.83 E-value=2.7e-19 Score=204.59 Aligned_cols=299 Identities=15% Similarity=0.158 Sum_probs=194.1
Q ss_pred HHHHHhhcccccCHHHHHHHHHhcccccCCC----------ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhh-
Q 005748 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM- 310 (679)
Q Consensus 242 ~~L~slst~~i~~~f~AIaELIDNS~DA~At----------~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~- 310 (679)
..|+.++.+.|+++..+|+|||+||+||++. .|.|.+. +.+...|+|.|||.||+.+++.+.
T Consensus 11 ~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 11 GVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 3556668778889999999999999999764 4555541 124678999999999999999986
Q ss_pred hhcccCCCCCC-----CCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcC--cccCCCCcE
Q 005748 311 TYFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI--VSYYRKGQF 383 (679)
Q Consensus 311 l~fG~S~k~~~-----d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi--~~~e~~Gt~ 383 (679)
..+|.|.+... +...||+|||||++++| +|+++.|.||+.+. ..++.|.+. +...+.+.. ..-..+||+
T Consensus 84 ~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~~-~~~~~W~~~--~~g~y~i~~~~~~~~~~GT~ 159 (601)
T PRK14083 84 ATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAKD-GPAVEWRGK--ADGTYSVRKLETERAEPGTT 159 (601)
T ss_pred hhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCCC-CceEEEEEC--CCCceEEEeCCCCCCCCCCE
Confidence 46887766431 35689999999987766 99999999999753 467888774 334555543 233358999
Q ss_pred EEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCcCcc
Q 005748 384 MELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI 461 (679)
Q Consensus 384 I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nLrr~~~~~eLdF~~d~~~~~~~~~~DI 461 (679)
|+|+++++. ++..++.++. |.+||.|..+||.- .|+...| .. ...-|..+ ..+|
T Consensus 160 I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l---------~~~~~~i---N~----~~~lW~~~--------~~ei 215 (601)
T PRK14083 160 VYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV---------EGEKGGV---NE----TPPPWTRD--------YPDP 215 (601)
T ss_pred EEEEecCchhhhccHHHHHHHHHHHhccCCCCccc---------CCceeee---cC----CCCCccCC--------cccc
Confidence 999998654 5666677765 88899999988862 1111111 10 01112111 0121
Q ss_pred eeecccccCCCCcccccCcchhhHHHHHhhhhc-CCCeEEEEcCeEecccchhhccccceeecccccceEEEEEEccccc
Q 005748 462 LIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQL 540 (679)
Q Consensus 462 ~i~~~~~~~~~~q~~~~~~~~ySLRaYLSiLYL-~PrmkI~LnG~kV~~~~i~~~L~~~~v~~~~~~~~~V~itiGf~k~ 540 (679)
. ..+....+|..-+|= +|-+.|.++-.- . . ...+-..++-...
T Consensus 216 t-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~-~---------------~~~~Ly~iP~~~~ 259 (601)
T PRK14083 216 E-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---G-G---------------LEGVAYVLPYAVS 259 (601)
T ss_pred C-----------------ccHHHHHHHHHHhcCCCchheeeecccc---h-h---------------heEEEEecCCCCC
Confidence 0 011223455555542 455555544221 0 0 0112222222111
Q ss_pred ccccccceEEEEEeCeeeeee-eeccccccCCCCCceEEEEEecCcccccCCCceecccCccCccCchHHHHHHHHHHHH
Q 005748 541 EWEQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKV 619 (679)
Q Consensus 541 e~~~~~~Gi~vY~nnRLI~~~-~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~ 619 (679)
. ....|+-+|+++=||..- .-+-|. .-+=|=|||+.+.| + ++-+...+.+...++++++.+.++
T Consensus 260 ~--~~~~~v~LY~~rVfI~d~~~~lLP~-----wl~FvrGVVDS~DL-p-------LNvSRE~LQ~~~~l~~ir~~i~kk 324 (601)
T PRK14083 260 P--AARRKHRVYLKRMLLSEEAENLLPD-----WAFFVRCVVNTDEL-R-------PTASREALYEDDALAAVREELGEA 324 (601)
T ss_pred c--cccCceEEEeeeeEeecchhhhhHH-----HHHHheeeeecCCC-C-------CccCHHHHccCHHHHHHHHHHHHH
Confidence 1 135799999999999643 335554 34667799999986 2 367777888999999999999888
Q ss_pred HHHHHhh
Q 005748 620 ADEYWDN 626 (679)
Q Consensus 620 l~eYw~~ 626 (679)
+.++..+
T Consensus 325 i~~~L~~ 331 (601)
T PRK14083 325 IRKWLIG 331 (601)
T ss_pred HHHHHHH
Confidence 8877644
No 6
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3e-21 Score=221.82 Aligned_cols=319 Identities=20% Similarity=0.263 Sum_probs=230.2
Q ss_pred EEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecC--CCcc
Q 005748 292 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 369 (679)
Q Consensus 292 ~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~--g~~~ 369 (679)
+|++.|||.||+++++..+..|+. ....+|+||+|+|+++|++|+++.++|+....+++++++++|.+ ..+.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478899999999999999988833 46789999999999999999999999999999999999999964 5678
Q ss_pred EEEcCcccCCCCcEEEEEeccchhhhhhhhhhhhhhcCCCcchhHHHhhcccc---CCCCCcEEEEEeccCC-CCceeee
Q 005748 370 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQ---DKCTGTQIYIWNLDQW-GSNYCLE 445 (679)
Q Consensus 370 i~VPi~~~e~~Gt~I~l~~~~~~e~~~e~~L~~I~kySpF~s~~I~e~~~~~~---~~~~GT~IiI~nLrr~-~~~~eLd 445 (679)
++||+++|+.++..+.. .....++++|++||+|.+. ..+.++++ ....||.++|.|+++. .++++++
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag--~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk 145 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAG--DYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHK 145 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCccccc--chhcccccceeccCCceeEEEEehhhhcCCCcccc
Confidence 89999999998876643 1234578889999999873 22223332 2234588888888875 5788999
Q ss_pred ccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeEecccchhhcc--ccceeec
Q 005748 446 WDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSL--NKTCVET 523 (679)
Q Consensus 446 F~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYLSiLYL~PrmkI~LnG~kV~~~~i~~~L--~~~~v~~ 523 (679)
|..| ..||+|++.- ++++-. +.|+.++|+.|+|.|++++..|+.+.+..+- ..+++.+
T Consensus 146 ~a~~--------a~aeLldnal---------DEi~~~---~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~ 205 (775)
T KOG1845|consen 146 WAKG--------AIAELLDNAL---------DEITNG---ATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIR 205 (775)
T ss_pred cccC--------hhhhhccccc---------cccccc---cceEEeeeecccccccceeEEeeccceeccccccCHHHHH
Confidence 9876 4788877541 222322 4459999999999999999999987644332 1122111
Q ss_pred c----------cccceEEEEEEcccccccccccceEEEEEeCeeeeeeeeccccccCCCCCceEEEEEecCcccccCCCc
Q 005748 524 G----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGL 593 (679)
Q Consensus 524 ~----------~~~~~~V~itiGf~k~e~~~~~~Gi~vY~nnRLI~~~~kVg~q~~~~~~grGVIGVve~~~l~~p~~~~ 593 (679)
. +...+......||.... ..-|..+|+-+|. +..++.++.+.||++..+||..
T Consensus 206 ~~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~---------~~~~~~kstqsiglls~tfL~~----- 268 (775)
T KOG1845|consen 206 KCMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRC---------ESRRGLKSTQSIGLLSYTFLRK----- 268 (775)
T ss_pred HHHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehh---------hhhccCCcceeEEEEEEeeecc-----
Confidence 1 11112333455666532 2388899998887 2234567889999999998754
Q ss_pred eecccCccCccCchHHHHHHHHHHHHHHHHHhhccccccccc--ccCCCCCCCceeccchhhhhhcCCCCCCCCCCCCcc
Q 005748 594 VWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK--DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEW 671 (679)
Q Consensus 594 ~~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~~~~~~~~~~~--~~~~~~~~~~wvQCd~C~KWR~lp~~~~~~~lp~~W 671 (679)
|+ |+||..+. +|++...+.-.++|.. |-+.+ +..--.+... . ..|+||+..+...+ .|+.+|
T Consensus 269 ---t~-~~d~iv~~---~~i~~~~e~~~~~~~~----i~~~s~~~~~~n~~i~~-~--~~~L~w~p~~~~~~--~l~q~~ 332 (775)
T KOG1845|consen 269 ---TG-KRDFIVPM---RLIKMDYEKSDQLWQG----ILYKSGVDWAVNLEIEV-T--ERFLKWSPYSHLLD--LLGQNS 332 (775)
T ss_pred ---cc-CCceeEec---chhhhhhhcccccccc----eeeccccccceeeeeHH-H--HHHhhcCccccHHH--Hhhhhh
Confidence 78 99999877 8888888999999965 22211 1111112111 1 18999999999875 789999
Q ss_pred cccCCCC
Q 005748 672 YSHLYSV 678 (679)
Q Consensus 672 ~C~~n~~ 678 (679)
+|..|+.
T Consensus 333 v~~~~~~ 339 (775)
T KOG1845|consen 333 VQYSKDF 339 (775)
T ss_pred hhhcccc
Confidence 9988764
No 7
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.79 E-value=5.4e-19 Score=204.42 Aligned_cols=163 Identities=23% Similarity=0.309 Sum_probs=125.0
Q ss_pred HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 242 ~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
+.|+-+..+.|+....+|+|||+||.||.. ..+.|.+.. +.+...|+|.|||+||+.+
T Consensus 13 ~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnGiGMt~e 86 (701)
T PTZ00272 13 QLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNGIGMTKA 86 (701)
T ss_pred HHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECCCCCCHH
Confidence 345555677777777889999999999942 245666653 2345789999999999999
Q ss_pred HHHhhhh-cccCCC--------CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcc
Q 005748 306 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 376 (679)
Q Consensus 306 eL~~~l~-fG~S~k--------~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~ 376 (679)
|+.+.++ .+.|.. ...+...||||||||+|++| +|++|.|.||+.+. .++.|.+ .+...+.|...+
T Consensus 87 dl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y~i~~~~ 161 (701)
T PTZ00272 87 DLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTFTITSTP 161 (701)
T ss_pred HHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcEEEEeCC
Confidence 9988764 555422 12346799999999998888 99999999998764 5888887 455667664332
Q ss_pred -c-CCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 377 -Y-YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 377 -~-e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
. ..+||+|+|+++++. ++..++.++. |.+||.|..+||.
T Consensus 162 ~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~ 204 (701)
T PTZ00272 162 ESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIE 204 (701)
T ss_pred CCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceE
Confidence 2 258999999999765 6888888876 8899999999886
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.2e-17 Score=181.39 Aligned_cols=151 Identities=30% Similarity=0.427 Sum_probs=121.0
Q ss_pred CHHHHHHHHHhcccccCC--------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccC--
Q 005748 254 WIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK-- 316 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S-- 316 (679)
.+| ++|||.||.||.. ..+.|.|.. +.+...|+|.|.|+|||++||.++++ ...|
T Consensus 59 EvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~------nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGt 130 (656)
T KOG0019|consen 59 EVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIIT------NKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGS 130 (656)
T ss_pred HHH--HHhhhccccchHHHHHHHhhcCccccccceeEEecc------CCCcceEEEEecCCCcCHHHHHhhhhhhhhccc
Confidence 466 9999999999932 466777653 44678999999999999999999876 2222
Q ss_pred ------CC-CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcccCCCCcEEEEEec
Q 005748 317 ------QP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 317 ------~k-~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~e~~Gt~I~l~~~ 389 (679)
.+ ...+.++|||||+|||+|++ ++++|.|+||+.+.. ++.|.+ .+...+.|-..+-..+||.|.++++
T Consensus 131 K~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~~rGTki~l~lK 205 (656)
T KOG0019|consen 131 KAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGLRTGTKIVIHLK 205 (656)
T ss_pred HHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCccccceEEeeeh
Confidence 23 34467899999999999998 999999999999874 778876 4556777666555678999999999
Q ss_pred c-chhhhhhhhhhh-hhhcCCCcchhHHHh
Q 005748 390 V-QSEATAKYNLKS-IKEFSPFNKYLIGEK 417 (679)
Q Consensus 390 ~-~~e~~~e~~L~~-I~kySpF~s~~I~e~ 417 (679)
. +.++.++..++. +.|||.|..+||.-.
T Consensus 206 e~~~ey~ee~rikeiVKK~S~Fv~yPI~l~ 235 (656)
T KOG0019|consen 206 EGDCEFLEEKRIKEVVKKYSNFVSYPIYLN 235 (656)
T ss_pred hhhhhhccHhHHHHHHhhccccccccchhh
Confidence 7 558888888876 899999999998744
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.9e-17 Score=178.08 Aligned_cols=160 Identities=25% Similarity=0.395 Sum_probs=120.1
Q ss_pred HHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 005748 243 YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (679)
Q Consensus 243 ~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (679)
+|++|... +.+| ++|||.||.||-. ..+.|.|.. +..+..|.|.|.|.||++++
T Consensus 88 IINSLY~N--KeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~ed 157 (785)
T KOG0020|consen 88 IINSLYRN--KEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTRED 157 (785)
T ss_pred HHHHHhhh--hHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHH
Confidence 45555433 3577 9999999999932 356666653 44678999999999999999
Q ss_pred HHhhhh-cccCC--------CCCC-----CCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEE
Q 005748 307 VVRMTY-FGHKQ--------PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 372 (679)
Q Consensus 307 L~~~l~-fG~S~--------k~~~-----d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~V 372 (679)
|.++++ ...|. .... ....|||||+|||+|++ +++.|.|+|++++. -.++|.+- ..++.|
T Consensus 158 Li~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD--~QyiWESd---an~Fsv 231 (785)
T KOG0020|consen 158 LIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD--SQYIWESD---ANSFSV 231 (785)
T ss_pred HHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc--cceeeecc---Ccceee
Confidence 999875 22221 1111 13689999999999988 99999999999986 35677662 336666
Q ss_pred cCcccC---CCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHHhh
Q 005748 373 PIVSYY---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKA 418 (679)
Q Consensus 373 Pi~~~e---~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~e~~ 418 (679)
...+|. ++||.|+|+++++. +++++..++. +.+||.|+.+||..+.
T Consensus 232 seDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWs 282 (785)
T KOG0020|consen 232 SEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWS 282 (785)
T ss_pred ecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeee
Confidence 555554 58999999999765 7888888876 8999999998887543
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=1e-17 Score=158.05 Aligned_cols=97 Identities=34% Similarity=0.511 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCC-CCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~-~d~~~IG~fGvGf 333 (679)
+..||+|||+||+||+|++|.|.+... ..+...|.|.|||.||+.++|..++.+|.+.+.. .+...+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 478999999999999999999999852 1356899999999999999999998998887641 2367899999999
Q ss_pred eeeceeccceEEEEEeeCCCCce
Q 005748 334 KTGAMRLGKDALVLTQTADSRSI 356 (679)
Q Consensus 334 KsAs~~Lg~~v~V~Sk~~~~~s~ 356 (679)
|.|++.+|+.+.|+|++.+....
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~ 100 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFT 100 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSE
T ss_pred HHHHHHhcCEEEEEEEECCCCcE
Confidence 99999999999999999987553
No 11
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.7e-12 Score=150.22 Aligned_cols=109 Identities=23% Similarity=0.382 Sum_probs=85.9
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-c
Q 005748 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (679)
Q Consensus 236 ~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (679)
...+++...+.+ +...+..|.+|++|||+||+||||++|+|.++ .+|...|.|.|||+||+++|+.-++. .
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 467899999999 45677899999999999999999999999997 46788899999999999999988764 4
Q ss_pred ccCCC-CCCCCCcccccCceeeeece---eccceEEEEEeeCCC
Q 005748 314 GHKQP-DADDPNRIGRFGVGFKTGAM---RLGKDALVLTQTADS 353 (679)
Q Consensus 314 G~S~k-~~~d~~~IG~fGvGfKsAs~---~Lg~~v~V~Sk~~~~ 353 (679)
.+|.- ..+|...|-.| ||++-++ +--.+++|.||+.+.
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~ 118 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA 118 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc
Confidence 44432 22344556655 8986554 345899999995553
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.46 E-value=3.3e-12 Score=147.82 Aligned_cols=109 Identities=22% Similarity=0.294 Sum_probs=84.2
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcc
Q 005748 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (679)
Q Consensus 236 ~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (679)
...+++..++.+ |...+..|.++|+|||+||+||||+.|.|.+.. ++...|.|.|||.||+.+++..++...
T Consensus 3 I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~-------~g~~~i~V~DnG~Gi~~~~~~~~~~~~ 75 (617)
T PRK00095 3 IQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEE-------GGLKLIRVRDNGCGISKEDLALALARH 75 (617)
T ss_pred ceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEe-------CCeEEEEEEEcCCCCCHHHHHHHhhcc
Confidence 467899999999 456678999999999999999999999999962 356789999999999999999887644
Q ss_pred cCCCCCC--C---CCcccccCceeeeeceeccceEEEEEeeCCC
Q 005748 315 HKQPDAD--D---PNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (679)
Q Consensus 315 ~S~k~~~--d---~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~ 353 (679)
.++|-.. + ....|..|.|+.+.+ .+ .+++|.||+.+.
T Consensus 76 ~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~s~~~~~ 117 (617)
T PRK00095 76 ATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLTSRTADA 117 (617)
T ss_pred CCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEEEecCCC
Confidence 4444321 2 245677777764332 34 479999998764
No 13
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.2e-11 Score=131.89 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=95.6
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcc
Q 005748 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (679)
Q Consensus 236 ~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (679)
..++++..++.+ |...+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+++++..++..+
T Consensus 3 I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 75 (312)
T TIGR00585 3 IKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACERH 75 (312)
T ss_pred CeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhCC
Confidence 457899999999 445568899999999999999999999988863 233469999999999999999886544
Q ss_pred cCCCCC-----CCCCcccccCceeeeeceeccceEEEEEee-CCCCceeEEEEEecCCCccEEEcCcccCCCCcEEEEE
Q 005748 315 HKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (679)
Q Consensus 315 ~S~k~~-----~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~-~~~~s~~~ls~sf~~g~~~i~VPi~~~e~~Gt~I~l~ 387 (679)
.+.|.. ......|..|.|+.+. ..++ +++|.||+ .+. ..++.+. . +|. .+.-....-...||.|++.
T Consensus 76 ~tsk~~~~~~~~~~~~~G~rG~al~si-~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 76 ATSKIQSFEDLERIETLGFRGEALASI-SSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CcCCCCChhHhhcccccCccchHHHHH-HhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEEc
Confidence 433321 1245789999988433 3355 89999998 443 2343333 2 232 1111111223579998874
No 14
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.24 E-value=1.2e-12 Score=103.81 Aligned_cols=35 Identities=40% Similarity=0.945 Sum_probs=25.3
Q ss_pred CceeccchhhhhhcCCCCCCC--CCCCCcccccCCCC
Q 005748 644 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWYSHLYSV 678 (679)
Q Consensus 644 ~~wvQCd~C~KWR~lp~~~~~--~~lp~~W~C~~n~~ 678 (679)
+.|||||+|+|||+||.+++. ..+|+.|+|+||++
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~ 37 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPD 37 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCC
Confidence 379999999999999999887 78999999999985
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.1e-10 Score=125.41 Aligned_cols=137 Identities=22% Similarity=0.234 Sum_probs=101.1
Q ss_pred cccCHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCC
Q 005748 251 HSGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPN 324 (679)
Q Consensus 251 ~i~~~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~ 324 (679)
-+.++.+.++|||+||+||.. ..|.|.|+.. +.+...+.|+|||.|++.+.+.+.|+ +-++++.....+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Q 107 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQ 107 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhh
Confidence 446788999999999999953 6788888753 45677899999999999999999875 334444334578
Q ss_pred cccccCceeeeec----eeccceEEEEEeeCCCCceeEEEEEec-CCCccEEEcCcccC----CCCcEEEEEeccch
Q 005748 325 RIGRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYY----RKGQFMELDTVVQS 392 (679)
Q Consensus 325 ~IG~fGvGfKsAs----~~Lg~~v~V~Sk~~~~~s~~~ls~sf~-~g~~~i~VPi~~~e----~~Gt~I~l~~~~~~ 392 (679)
+.||+|+|.+.|. |..|+.+.|+|.+.++..+..++..-. ..++..++....++ -+||.|++.++..+
T Consensus 108 sRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~~ 184 (538)
T COG1389 108 SRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGVW 184 (538)
T ss_pred ccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEecccc
Confidence 8999999997654 467999999999998765555554332 23445555443333 37999999987653
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.91 E-value=3.3e-09 Score=118.54 Aligned_cols=140 Identities=21% Similarity=0.363 Sum_probs=103.1
Q ss_pred eeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhh-h
Q 005748 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-Y 312 (679)
Q Consensus 235 ~~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~ 312 (679)
..-+++...++++ +...|..|..||.|||.||+||+++.|.|.+. ++|-..|.|.|||.||.++||.-+. +
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 4568999999999 44567899999999999999999999999886 4677888999999999999997754 6
Q ss_pred cccCCC-CCCCCCcccccCceeee---eceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcccCCCCcEEEE
Q 005748 313 FGHKQP-DADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 386 (679)
Q Consensus 313 fG~S~k-~~~d~~~IG~fGvGfKs---As~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~e~~Gt~I~l 386 (679)
|.+|.- ..+|...+..| ||++ |+++-..+|+|.||+.+..+. + --+|.+|.=. .-|-+.--.+||.|++
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~ca-y-rasY~DGkm~-~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCA-Y-RASYRDGKMI-ATPKPCAGKQGTIITV 152 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceee-e-EEEeeccccc-cCCCCccCCCceEEEe
Confidence 877653 23566777777 7775 556667999999999987533 2 2233333211 1133333457888876
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.85 E-value=4.9e-09 Score=119.47 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=77.1
Q ss_pred ecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhh-hhccc
Q 005748 238 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFGH 315 (679)
Q Consensus 238 ~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~-l~fG~ 315 (679)
.++++..|++ +.+.+.++.+|++|||+||+||||+.|+|.++ +.|...|.|.|||+|++..++.-+ +..-+
T Consensus 3 ~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 3 QIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred CCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhhh
Confidence 5678888888 55566789999999999999999999999987 347889999999999999987664 22222
Q ss_pred CCC-CCCCCCcccccCceeeeece-ecc--ceEEEEEeeCC
Q 005748 316 KQP-DADDPNRIGRFGVGFKTGAM-RLG--KDALVLTQTAD 352 (679)
Q Consensus 316 S~k-~~~d~~~IG~fGvGfKsAs~-~Lg--~~v~V~Sk~~~ 352 (679)
|.- ...|. ..-+-.||++-++ +|| .+++|.|++..
T Consensus 76 SKi~~f~Dl--~~l~T~GFRGEALSsLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 76 SKIVSFADL--AVLFTLGFRGEALSSLCALGDVMISTRSHS 114 (672)
T ss_pred hcccchhhh--hhhhhhhhHHHHHHhhhhccceEEEEeecc
Confidence 221 11232 2334457876554 233 78888888873
No 18
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.76 E-value=6.8e-08 Score=112.49 Aligned_cols=95 Identities=24% Similarity=0.308 Sum_probs=69.4
Q ss_pred cCHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcc
Q 005748 253 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 326 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~I 326 (679)
.++..+|.|||+||+||++. .|.|.+.. ..+.-.|.|.|||.||+++++.+++. |.++++........
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~sr 118 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSR 118 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCC
Confidence 35778999999999999865 46666653 22335799999999999999999885 65444422223567
Q ss_pred cccCceeeeece----eccceEEEEEeeCCC
Q 005748 327 GRFGVGFKTGAM----RLGKDALVLTQTADS 353 (679)
Q Consensus 327 G~fGvGfKsAs~----~Lg~~v~V~Sk~~~~ 353 (679)
|+.|+|+.++.. .-|..+.|.|+..+.
T Consensus 119 G~rG~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 119 GQQGIGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred CCCceehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 899999965542 337789999987664
No 19
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.72 E-value=9.6e-08 Score=108.63 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccc
Q 005748 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~ 328 (679)
+..+|.|||+||+||.++ .|.|.+... ..+.+...|.|.|||.||+++++..++. |.++.+........|.
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~---~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV---DEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc---cCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 678999999999999865 466666521 0012346789999999999999999874 4343332111456799
Q ss_pred cCceeeeece----eccceEEEEEeeCCC
Q 005748 329 FGVGFKTGAM----RLGKDALVLTQTADS 353 (679)
Q Consensus 329 fGvGfKsAs~----~Lg~~v~V~Sk~~~~ 353 (679)
+|+|+..+.. ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999965532 235678999987654
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.56 E-value=3.3e-07 Score=103.34 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=70.5
Q ss_pred cCHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcc
Q 005748 253 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 326 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~I 326 (679)
..+..++.|||+||+||.++ .|.|.+... ..+...|.|.|||.||+++++..++. |.++.+........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 45778999999999999875 566666531 11234789999999999999999875 55554432235567
Q ss_pred cccCceeeeece----eccceEEEEEeeCCCC
Q 005748 327 GRFGVGFKTGAM----RLGKDALVLTQTADSR 354 (679)
Q Consensus 327 G~fGvGfKsAs~----~Lg~~v~V~Sk~~~~~ 354 (679)
|..|+|+.++.+ ..|..+.|.|+..+..
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 999999965433 3356699999988653
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.49 E-value=5.9e-07 Score=104.72 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--------hhh-cccCCCC
Q 005748 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~ 319 (679)
..+...+.||||||+|+ .|+.|.|.+.. ...|+|.|||.||+.+.... +|. +..+.+.
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 45777899999999998 79999999873 23899999999999988776 443 2222332
Q ss_pred CC--CCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcC-ccc--CCCCcEEEEEec
Q 005748 320 AD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTV 389 (679)
Q Consensus 320 ~~--d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~--e~~Gt~I~l~~~ 389 (679)
.. -....|..|+|.+ +.-.++..+.|.|++.+.. +.++|..|...-.++. ..- ...||.|++.+.
T Consensus 107 ~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD 176 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPD 176 (631)
T ss_pred CCccccccCcccccchh-hhhhheeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEEC
Confidence 11 2367899999994 4445889999999987642 4556644421111111 111 457999988653
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.41 E-value=8.8e-07 Score=103.11 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=80.7
Q ss_pred HHHHHHHHhcccc---c-CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHhhhh-cccCCCCCC-
Q 005748 256 FGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDAD- 321 (679)
Q Consensus 256 f~AIaELIDNS~D---A-~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~~~- 321 (679)
..++.||||||+| | +|++|.|.|.. ...|+|.|||.||+.++ +.-+|+ ...+.+...
T Consensus 32 ~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~ 102 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNK 102 (625)
T ss_pred ceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCC
Confidence 4469999999999 9 69999999872 26899999999999887 555553 222223211
Q ss_pred -CCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcC-ccc--CCCCcEEEEEec
Q 005748 322 -DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTV 389 (679)
Q Consensus 322 -d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~--e~~Gt~I~l~~~ 389 (679)
-..+.|..|+|.++ .-.++..+.|.|++.+.. +.++|..|.....++. ... ...||+|++.+.
T Consensus 103 ~~~~SgG~~GvGls~-vnalS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD 169 (625)
T TIGR01055 103 NYHFSGGLHGVGISV-VNALSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPD 169 (625)
T ss_pred cceecCCCcchhHHH-HHHhcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEEC
Confidence 23578999999954 344899999999987753 4556644422111121 122 237999987553
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.32 E-value=3e-06 Score=100.15 Aligned_cols=120 Identities=17% Similarity=0.197 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH----------HHHhhhhcccCCCCC
Q 005748 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRMTYFGHKQPDA 320 (679)
Q Consensus 255 ~f~AIaELIDNS~D---A~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e----------eL~~~l~fG~S~k~~ 320 (679)
+--.+.||||||+| || |+.|.|.|.. ...|+|.|||.||+.+ |+.-. ....+.|..
T Consensus 38 Lhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt-~lhAggKfd 107 (756)
T PRK14939 38 LHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMT-VLHAGGKFD 107 (756)
T ss_pred hhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhheee-eecccCCCC
Confidence 34459999999999 99 9999999872 2489999999999987 32211 122222221
Q ss_pred CC--CCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEc-CcccCCCCcEEEEEec
Q 005748 321 DD--PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 389 (679)
Q Consensus 321 ~d--~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VP-i~~~e~~Gt~I~l~~~ 389 (679)
.+ .-+-|..|+|.+ +.-.++..+.|.|++.+.. +.++|..|...-.++ +..-...||.|+..+.
T Consensus 108 ~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~PD 174 (756)
T PRK14939 108 QNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWPS 174 (756)
T ss_pred CCcccccCCccCccce-EeehccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEEC
Confidence 11 336799999994 4455899999999987752 556665442111011 1112357999987553
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.24 E-value=5.8e-06 Score=96.60 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=75.9
Q ss_pred HHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHH--------hhhhc-ccCCCCCC-
Q 005748 256 FGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTYF-GHKQPDAD- 321 (679)
Q Consensus 256 f~AIaELIDNS~D---A~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~f-G~S~k~~~- 321 (679)
.-.+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+.-. .+|.. ..+.+...
T Consensus 39 ~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~ 109 (638)
T PRK05644 39 HHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG 109 (638)
T ss_pred HhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCC
Confidence 3458999999999 99 9999999972 2389999999999986322 12221 11222211
Q ss_pred -CCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcC-cccCCCCcEEEEEe
Q 005748 322 -DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 388 (679)
Q Consensus 322 -d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~e~~Gt~I~l~~ 388 (679)
-....|..|+|.++. -.++..++|.|++.+. .+.++|..|...-.++. ..-...||+|+..+
T Consensus 110 ~yk~s~G~~G~Gls~v-nalS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 110 GYKVSGGLHGVGVSVV-NALSTWLEVEVKRDGK----IYYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred cccccCCccccchhhh-hheeceEEEEEEeCCc----EEEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 234789999999544 4488999999998765 23455544321101111 11234799998643
No 25
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.24 E-value=3.2e-06 Score=98.09 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=74.3
Q ss_pred HHHHHhcccccC----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--------hhh-cccCCCCC--CCC
Q 005748 259 IAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA--DDP 323 (679)
Q Consensus 259 IaELIDNS~DA~----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~~--~d~ 323 (679)
+.||||||+||+ |+.|.|.|+. ...|+|.|||.||+.+.... ++. +..+.+.. ...
T Consensus 6 v~ElvdNAiD~~~~g~at~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 6 VDEIVDNAADEALAGYMDTIKVTIDK---------DNSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred EeeehhcccchhccCCCCEEEEEEeC---------CCeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCcc
Confidence 789999999997 9999999973 13899999999998644321 122 11112211 124
Q ss_pred CcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecC-CC--ccEE-EcCcccCCCCcEEEEEe
Q 005748 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GK--DNLE-IPIVSYYRKGQFMELDT 388 (679)
Q Consensus 324 ~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~-g~--~~i~-VPi~~~e~~Gt~I~l~~ 388 (679)
...|..|+|.+ +.-.++..++|.|++.+.. +.++|.. |. .... ++. -...||.|+..+
T Consensus 77 ~s~G~~G~Gls-~vnalS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~~~~--~~~~GT~V~F~P 138 (594)
T smart00433 77 VSGGLHGVGAS-VVNALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKIIGD--TKKDGTKVTFKP 138 (594)
T ss_pred ccCCcccchHH-HHHHhcCceEEEEEeCCcE----EEEEEeCCCeECccceecCC--CCCCCcEEEEEE
Confidence 57899999994 4445889999999998653 4455533 32 1111 121 235799998643
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.22 E-value=6.6e-06 Score=96.51 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHH--------hhhh-cccCCCCC-
Q 005748 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQPDA- 320 (679)
Q Consensus 255 ~f~AIaELIDNS~D---A~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-fG~S~k~~- 320 (679)
+.-.+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+--. ..+. +..+.+..
T Consensus 31 l~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~ 101 (654)
T TIGR01059 31 LHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDK 101 (654)
T ss_pred HHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCC
Confidence 45569999999999 99 9999999872 2359999999999985211 1122 11122211
Q ss_pred -CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccE---EEcCcccCCCCcEEEEEec
Q 005748 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL---EIPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 321 -~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i---~VPi~~~e~~Gt~I~l~~~ 389 (679)
......|..|+|.++. -.+++.++|.|++++.. +.++|..|.-.- .++ .-...||+|+....
T Consensus 102 ~~~k~s~G~~G~gl~~i-nalS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~~~--~~~~~GT~V~F~pd 167 (654)
T TIGR01059 102 DSYKVSGGLHGVGVSVV-NALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEVVG--ETKKTGTTVRFWPD 167 (654)
T ss_pred CcceecCCccchhHHHH-HHhcCeEEEEEEECCeE----EEEEEeCCCcccCceecc--CCCCCCcEEEEEEC
Confidence 1235789999999544 44889999999987653 445564442111 112 12347999986543
No 27
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.21 E-value=8.8e-07 Score=79.22 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=64.6
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..+|.||++||+++... .|.|.+.. ..+...|.|.|||.||+.+++.+++.-+.+.+. +....+.+|+
T Consensus 5 ~l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~Gl 76 (111)
T PF02518_consen 5 RLRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCCh
Confidence 3567899999999999665 78887764 235678999999999999999998763333221 3455667999
Q ss_pred eeeeece---eccceEEEEEeeC
Q 005748 332 GFKTGAM---RLGKDALVLTQTA 351 (679)
Q Consensus 332 GfKsAs~---~Lg~~v~V~Sk~~ 351 (679)
|++.+.. .++-++.+.+...
T Consensus 77 GL~~~~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 77 GLYIVKQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHHHHHHTTEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCEEEEEEcCC
Confidence 9975433 3456666666543
No 28
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.18 E-value=5.2e-06 Score=96.54 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccc
Q 005748 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~ 328 (679)
+..++.|||+||+||++. .|.|.+... +.+...|.|.|||.||+++++..++. |-.+++........|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 447899999999999875 577776531 12234589999999999999999875 4333332222356788
Q ss_pred cCceeeeec----eeccceEEEEEeeCCC
Q 005748 329 FGVGFKTGA----MRLGKDALVLTQTADS 353 (679)
Q Consensus 329 fGvGfKsAs----~~Lg~~v~V~Sk~~~~ 353 (679)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999996554 2347778999987654
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.93 E-value=5.8e-06 Score=94.53 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=67.9
Q ss_pred cCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhh-hcccC
Q 005748 239 ADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHK 316 (679)
Q Consensus 239 v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S 316 (679)
++...=+++ |.-.+.++..++.|||-||+||+|+.|.|.+.. ....+.|.|||.||+++|+..+- ++.+|
T Consensus 5 L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 5 LSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred cchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 344445555 333446788999999999999999999999874 25678999999999999998753 22222
Q ss_pred CC-CCCCCCcccccCceeeeecee-c--cceEEEEEeeCCC
Q 005748 317 QP-DADDPNRIGRFGVGFKTGAMR-L--GKDALVLTQTADS 353 (679)
Q Consensus 317 ~k-~~~d~~~IG~fGvGfKsAs~~-L--g~~v~V~Sk~~~~ 353 (679)
.- .-++...--.| ||+..++. + -..+.|.|++.+.
T Consensus 77 K~h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r 115 (1142)
T KOG1977|consen 77 KCHSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNR 115 (1142)
T ss_pred hceecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCC
Confidence 11 11222233344 56554432 2 2445667766654
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.65 E-value=0.00022 Score=83.58 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=73.3
Q ss_pred HHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--------hhhc-ccCCCCCC--CC
Q 005748 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTYF-GHKQPDAD--DP 323 (679)
Q Consensus 259 IaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~f-G~S~k~~~--d~ 323 (679)
+.|+||||+|. .++.|.|.|.. ...++|.|||.||+.+--.. .|+. ..+.+... -.
T Consensus 39 v~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~yk 109 (637)
T TIGR01058 39 VWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYK 109 (637)
T ss_pred hhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCccc
Confidence 78999999993 57889998862 35899999999998642111 1221 11122111 13
Q ss_pred CcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCc---cEEEcCcccCCCCcEEEEEec
Q 005748 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD---NLEIPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 324 ~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~---~i~VPi~~~e~~Gt~I~l~~~ 389 (679)
-.-|..|+|. ++.=.|...+.|.+++++. .+.++|..|.. ...+. ..-...||.|+..+.
T Consensus 110 vSGGlhGvG~-svvNAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~-~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 110 TAGGLHGVGA-SVVNALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKI-GTTKKTGTLVHFHPD 172 (637)
T ss_pred ccCCcccccc-cccceeeceEEEEEEECCE----EEEEEEecCCcCcCCcccc-cCCCCCceEEEEEeC
Confidence 4669999999 4555589999999987775 34566754421 11111 122357999887654
No 31
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00016 Score=83.16 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=95.2
Q ss_pred HHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------Hhhhh-cccCCCCCCC--C
Q 005748 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDADD--P 323 (679)
Q Consensus 259 IaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~~d--~ 323 (679)
+.|.||||+|. .|+.|.|.+.. ...|+|.|||-||+-+-= .-+|+ +....|..++ .
T Consensus 41 v~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~Yk 111 (635)
T COG0187 41 VWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYK 111 (635)
T ss_pred EeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccE
Confidence 78999999996 47889988862 578999999999987652 22233 2122222222 3
Q ss_pred CcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCc--cEE-EcCcccCCCCcEEEEEeccchhhhhhhhh
Q 005748 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTVVQSEATAKYNL 400 (679)
Q Consensus 324 ~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~-VPi~~~e~~Gt~I~l~~~~~~e~~~e~~L 400 (679)
-+=|..|+|. +..=.|...+.|.+++++. .+.+.|..|.. .+. +-.+.-...||+|+..+..+-
T Consensus 112 vSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~i-------- 178 (635)
T COG0187 112 VSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEI-------- 178 (635)
T ss_pred eecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHh--------
Confidence 4568999999 6666799999999999875 45566754432 221 111233456999987664331
Q ss_pred hhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005748 401 KSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (679)
Q Consensus 401 ~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nLrr 437 (679)
.+-..|....|...+..+.--..|..|.+.+-+.
T Consensus 179 ---F~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 179 ---FGETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred ---cCCcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 1112333333343333333235788888876654
No 32
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.36 E-value=0.00062 Score=84.04 Aligned_cols=86 Identities=23% Similarity=0.330 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh----h--hhcc---cCCCCC
Q 005748 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFG---HKQPDA 320 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~----~--l~fG---~S~k~~ 320 (679)
+.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.+ . +-|| .+.+..
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd 124 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD 124 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccC
Confidence 3344899999999953 3778888863 246899999999998752211 0 1122 222221
Q ss_pred C--CCCcccccCceeeeeceeccceEEEEEe
Q 005748 321 D--DPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (679)
Q Consensus 321 ~--d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk 349 (679)
. -.-.-|+.|+|.+ .+=.+...+.|.++
T Consensus 125 d~~ykvSGGlhGvGas-vvNaLS~~f~Vev~ 154 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAK-LANIFSTEFTVETA 154 (1135)
T ss_pred CccceeeccccCCCCe-EEEeecCeEEEEEE
Confidence 1 2457899999994 44558999999997
No 33
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.27 E-value=0.00095 Score=83.39 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=57.2
Q ss_pred HHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--h----hhccc---CCCCC-
Q 005748 256 FGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQPDA- 320 (679)
Q Consensus 256 f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~fG~---S~k~~- 320 (679)
.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.. . +-||+ +.+..
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd 150 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDD 150 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCC
Confidence 344899999999953 4788888863 246899999999998652111 0 11222 22221
Q ss_pred -CCCCcccccCceeeeeceeccceEEEEEe
Q 005748 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (679)
Q Consensus 321 -~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk 349 (679)
.-...-|+.|+|.+ ..-.|...+.|.++
T Consensus 151 ~~yKvSGGlhGVGas-vvNaLS~~f~Vev~ 179 (1465)
T PLN03237 151 NEKKTTGGRNGYGAK-LTNIFSTEFVIETA 179 (1465)
T ss_pred CcceeeccccccCcc-ccccccCeeEEEEE
Confidence 12457899999994 44558999999997
No 34
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.16 E-value=0.00068 Score=76.97 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=64.5
Q ss_pred cCHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCccc
Q 005748 253 GWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG 327 (679)
....+.+.-|||||+||-+ +.|.+.+.. .++.-.|.|.|||+||+++....++..|.|.+. .+
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~ 493 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TG 493 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CC
Confidence 3567889999999999966 456666653 345667899999999999999999999998774 34
Q ss_pred ccCceeee---eceeccceEEEEEe
Q 005748 328 RFGVGFKT---GAMRLGKDALVLTQ 349 (679)
Q Consensus 328 ~fGvGfKs---As~~Lg~~v~V~Sk 349 (679)
.-|+|++. ..=++|..+.|.+.
T Consensus 494 ~rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 494 GRGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred CCchhHHHHHHHHHHcCceEEEeeC
Confidence 45888763 22356777777775
No 35
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.14 E-value=0.0009 Score=57.11 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++.||++||+++..+ .|.|.+.. ..+...+.|.|+|.||+.+.+...+..+.+... .....+..|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 234567899999999999998887654433221 22345668889
Q ss_pred eee
Q 005748 333 FKT 335 (679)
Q Consensus 333 fKs 335 (679)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 864
No 36
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.14 E-value=0.0013 Score=76.62 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=72.3
Q ss_pred HHHHHhccccc------C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh-----h----hhccc---CCCC
Q 005748 259 IAELVDNSRDA------K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR-----M----TYFGH---KQPD 319 (679)
Q Consensus 259 IaELIDNS~DA------~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~-----~----l~fG~---S~k~ 319 (679)
+.|+||||+|. | ++.|+|.++ ...++|.|||.||+-+.-.+ . +-|+. +.+.
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 78999999995 2 567777764 35899999999998643211 0 11221 2222
Q ss_pred C-CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcccCCCCcEEEEEec
Q 005748 320 A-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 320 ~-~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~e~~Gt~I~l~~~ 389 (679)
. .-.-.-|..|+|. +..-.|...+.|.++..+. .+.++|..|.....++...-..+||.|+..+.
T Consensus 120 d~~ykvSGGlhGVG~-svvNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD 185 (602)
T PHA02569 120 DDTNRVTGGMNGVGS-SLTNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPD 185 (602)
T ss_pred CCcceeeCCcCCccc-eeeeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEEC
Confidence 1 1244679999999 5555689999998865553 25667755532222222223357999887664
No 37
>PRK10604 sensor protein RstB; Provisional
Probab=97.07 E-value=0.0013 Score=73.02 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=61.7
Q ss_pred CHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
.+..++..||+||+.++...|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+..... ....-|.+|+|+
T Consensus 319 ~l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL 391 (433)
T PRK10604 319 LMERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGL 391 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchH
Confidence 355779999999999988888888764 2334578999999999999999987633322111 112335679998
Q ss_pred eee---ceeccceEEEEEee
Q 005748 334 KTG---AMRLGKDALVLTQT 350 (679)
Q Consensus 334 KsA---s~~Lg~~v~V~Sk~ 350 (679)
.-+ .-..|.++.|.+..
T Consensus 392 ~ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 392 AIVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHHCCCEEEEEecC
Confidence 432 22456677776654
No 38
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.07 E-value=0.001 Score=55.79 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=54.5
Q ss_pred HHHHHHHhcccccCC---CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 257 GAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 257 ~AIaELIDNS~DA~A---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
.++.||++||+++++ ..|.|.+.. ..+...+.|.|+|.||++..+...+...... ......+..|+|+
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~gl 73 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLGL 73 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccCH
Confidence 579999999999987 455555542 2234678899999999999988775432111 1123345678888
Q ss_pred eeec---eeccceEEEEEee
Q 005748 334 KTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 334 KsAs---~~Lg~~v~V~Sk~ 350 (679)
+.+. -+.|.++.+.+..
T Consensus 74 ~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 74 SIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 6432 1234566665543
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.97 E-value=0.0016 Score=71.28 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... .....+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45678999999999988888887763 2234578999999999999998887533322111 1123356788885
Q ss_pred ee---ceeccceEEEEEee
Q 005748 335 TG---AMRLGKDALVLTQT 350 (679)
Q Consensus 335 sA---s~~Lg~~v~V~Sk~ 350 (679)
.+ ....|.++.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 22356666666543
No 40
>PRK10364 sensor protein ZraS; Provisional
Probab=96.93 E-value=0.002 Score=71.60 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+++.-+++.+. +..|+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~Gl 414 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGL 414 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCcc
Confidence 356779999999999844 456666653 223467899999999999999998875555432 12588
Q ss_pred eeeee---ceeccceEEEEEee
Q 005748 332 GFKTG---AMRLGKDALVLTQT 350 (679)
Q Consensus 332 GfKsA---s~~Lg~~v~V~Sk~ 350 (679)
|+..+ .-..|.++.+.+..
T Consensus 415 GL~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 415 GLAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC
Confidence 87532 12356667666643
No 41
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.86 E-value=0.0025 Score=69.71 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=58.2
Q ss_pred CHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
.+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+++.-++.... .+. .+.+|+|+
T Consensus 331 ~l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL 401 (435)
T PRK09467 331 AIKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGL 401 (435)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhH
Confidence 355679999999999998888888763 223457899999999999999988764332211 111 24578887
Q ss_pred eee---ceeccceEEEEEe
Q 005748 334 KTG---AMRLGKDALVLTQ 349 (679)
Q Consensus 334 KsA---s~~Lg~~v~V~Sk 349 (679)
.-+ .-..|.++.+.+.
T Consensus 402 ~iv~~i~~~~~g~l~i~~~ 420 (435)
T PRK09467 402 AIVKRIVDQHNGKVELGNS 420 (435)
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 422 1124556666554
No 42
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.86 E-value=0.0036 Score=75.14 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=74.6
Q ss_pred HHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--------hhh-------cccCC--
Q 005748 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-------FGHKQ-- 317 (679)
Q Consensus 259 IaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-------fG~S~-- 317 (679)
+-|+||||+|. .++.|.|.|.. ...++|.|||-||+-+.-.+ .|. |+...
T Consensus 134 v~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~ 204 (903)
T PTZ00109 134 LFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPK 204 (903)
T ss_pred EEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccc
Confidence 78999999995 36788888862 35899999999998743221 121 32210
Q ss_pred -----------------C--------------CC-CC--CCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEe
Q 005748 318 -----------------P--------------DA-DD--PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSL 363 (679)
Q Consensus 318 -----------------k--------------~~-~d--~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf 363 (679)
+ .. .+ .-.-|..|+|. ++.=.|...+.|.+++.+. .+.++|
T Consensus 205 ~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y~q~F 279 (903)
T PTZ00109 205 NSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IYSIEL 279 (903)
T ss_pred cccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EEEEEe
Confidence 0 00 00 23678999999 6666799999999999876 456777
Q ss_pred cCCCc--cEEEcCcccCCCCcEEEEEec
Q 005748 364 NQGKD--NLEIPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 364 ~~g~~--~i~VPi~~~e~~Gt~I~l~~~ 389 (679)
..|.- .+.+--.+-...||.|+..+.
T Consensus 280 ~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 280 SKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred CCCcccCCccccCCcCCCCceEEEEEeC
Confidence 55531 111111111347999887654
No 43
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.74 E-value=0.004 Score=68.09 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..+|..||+||+.+....-.|.+.... ...+.-.|.|.|||.||+++++.+++.-.++.+. ....+-+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~---~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLGL~ 346 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLH---RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIGLS 346 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEe---cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCcccccHH
Confidence 5577999999999987644344443210 0223456899999999999999998863332221 112345788884
Q ss_pred ee---ceeccceEEEEEeeCC
Q 005748 335 TG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 335 sA---s~~Lg~~v~V~Sk~~~ 352 (679)
.+ .-..|.++.|.|...+
T Consensus 347 i~~~iv~~~gG~i~v~s~~~~ 367 (380)
T PRK09303 347 VCRRIVRVHYGQIWVDSEPGQ 367 (380)
T ss_pred HHHHHHHHcCCEEEEEecCCC
Confidence 32 2246777777775443
No 44
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.74 E-value=0.0037 Score=68.21 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..++.+|++||++++. ..|.|.+.. .++.-.|.|.|||.||+++.+.+.+.-.++.+.... ..-+..|+
T Consensus 353 ~l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~Gl 425 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARS-NSGEGTGL 425 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccC-CCCCCccc
Confidence 356789999999999874 356666653 233457899999999999999888753333221111 12344788
Q ss_pred eeeeec---eeccceEEEEE
Q 005748 332 GFKTGA---MRLGKDALVLT 348 (679)
Q Consensus 332 GfKsAs---~~Lg~~v~V~S 348 (679)
|+..+. -+.|..+.+.+
T Consensus 426 GL~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 426 GLAIVRSIMEAHGGRASAES 445 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEe
Confidence 875321 23455566555
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.68 E-value=0.0036 Score=68.37 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcccccCCCc------cEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccc
Q 005748 255 IFGAIAELVDNSRDAKATK------LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~------V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~ 328 (679)
+-.++.+|+.||+++.+.. |.|.... ..+.-.|+|.|||.||+++...+.|.-.++.+.. ..+.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G 457 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKH 457 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCC
Confidence 4578999999999985332 4444332 3345678999999999999999988633333211 1233
Q ss_pred cCceeeeec---eeccceEEEEEee
Q 005748 329 FGVGFKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 329 fGvGfKsAs---~~Lg~~v~V~Sk~ 350 (679)
-|+|+..+- -..|..+.|.|..
T Consensus 458 ~GlGL~i~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 458 IGMGLSVAQEIVADHGGIIDLDDDY 482 (494)
T ss_pred CcccHHHHHHHHHHcCCEEEEEECC
Confidence 578875321 1357777776643
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.63 E-value=0.0048 Score=69.10 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccC
Q 005748 255 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fG 330 (679)
+..++.+|++||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++.-+++.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 55789999999999842 356666553 234557899999999999999998865554432 1248
Q ss_pred ceeeee---ceeccceEEEEEe
Q 005748 331 VGFKTG---AMRLGKDALVLTQ 349 (679)
Q Consensus 331 vGfKsA---s~~Lg~~v~V~Sk 349 (679)
+|+..+ .-..|..+.|.|.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 887432 1234566666654
No 47
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.63 E-value=0.014 Score=73.41 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcccccC--------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--h----hhccc---CC
Q 005748 255 IFGAIAELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQ 317 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~--------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~fG~---S~ 317 (679)
+.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.. + +-||+ +.
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 3344899999999952 4778888863 246899999999997643211 0 11322 22
Q ss_pred CCC--CCCCcccccCceeeeeceeccceEEEEEeeC--CCCceeEEEEEecCCCccEEEcCc-cc-C-CCCcEEEEEec
Q 005748 318 PDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 389 (679)
Q Consensus 318 k~~--~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~--~~~s~~~ls~sf~~g~~~i~VPi~-~~-e-~~Gt~I~l~~~ 389 (679)
+.. .-.-.-|+.|+|.+ .+-.+...+.|.++.. +. .+.++|..|.....-|.. +. . .+||.|+..+.
T Consensus 130 kfdd~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 130 NYDDTEKRVTGGRNGFGAK-LTNIFSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred cCCCCceeeecccccCCcc-ccccccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 221 12457899999994 4555899999999988 54 355666544211112221 22 2 47899887654
No 48
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.63 E-value=0.0048 Score=68.04 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=56.8
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..++.+|++||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 4667899999999999654 35554432 2234578999999999999999987532221111 1122345688
Q ss_pred eeeee---ceeccceEEEEEee
Q 005748 332 GFKTG---AMRLGKDALVLTQT 350 (679)
Q Consensus 332 GfKsA---s~~Lg~~v~V~Sk~ 350 (679)
|+..+ .-..|.++.|.|..
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEecC
Confidence 87532 12346666666643
No 49
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.57 E-value=0.0041 Score=62.92 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCC
Q 005748 253 GWIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k 318 (679)
.++..++..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+..++..+.+.+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~ 287 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTD 287 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccC
Confidence 3566789999999999994 778877763 11245789999999999999888876444433
No 50
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.55 E-value=0.005 Score=69.70 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccc
Q 005748 255 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~ 328 (679)
+...+.+|++||+++. ...|.|.+.. ..+.-.|.|.|||.||++++..+.+..+++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567899999999983 3556666653 2334568999999999999999998766654421 1234
Q ss_pred cCceeeeec---eeccceEEEEEe
Q 005748 329 FGVGFKTGA---MRLGKDALVLTQ 349 (679)
Q Consensus 329 fGvGfKsAs---~~Lg~~v~V~Sk 349 (679)
.|+|+..+- -..|..+.|.|.
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s~ 526 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLEDN 526 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEEC
Confidence 588885321 134555666554
No 51
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.54 E-value=0.0079 Score=62.10 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..++.+||.||+++... .|.|.+.. ..+.-.|.|.|||.||+++.+.+++......... .....+..|+
T Consensus 229 ~l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~gl 301 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGL 301 (333)
T ss_pred HHHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCcc
Confidence 3567899999999998654 45555442 2234578999999999999999887633322111 0112233588
Q ss_pred eeeeec---eeccceEEEEEee
Q 005748 332 GFKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 332 GfKsAs---~~Lg~~v~V~Sk~ 350 (679)
|++.+- -..|.++.+.|..
T Consensus 302 GL~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 302 GLAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred cHHHHHHHHHHCCCEEEEEecC
Confidence 885422 2356777777654
No 52
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.47 E-value=0.0056 Score=67.03 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=58.6
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-.++.... ...-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~--~~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP--ANGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC--CCCCCCcch
Confidence 467889999999999864 467776653 3345679999999999999999887643332211 111234588
Q ss_pred eeeeec---eeccceEEEEEee
Q 005748 332 GFKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 332 GfKsAs---~~Lg~~v~V~Sk~ 350 (679)
|++.+- ..+|..+.+.|..
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 876421 2356666666643
No 53
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.36 E-value=0.0087 Score=65.93 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 556799999999998654 46666553 2344578899999999999999887522222211 12234567888
Q ss_pred eeee---ceeccceEEEEEee
Q 005748 333 FKTG---AMRLGKDALVLTQT 350 (679)
Q Consensus 333 fKsA---s~~Lg~~v~V~Sk~ 350 (679)
+..+ .-..|.++.+.+..
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8532 22356666666643
No 54
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.27 E-value=0.0074 Score=71.11 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH-HHhhhhcccCCCCCCCCCcccccCc
Q 005748 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-L~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
+..++.+||+||+++.. ..|.|.+.. .++.-.|.|.|||.||+++. ..+.+...++.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45679999999999964 457777653 23456789999999999998 5666654333321 34588
Q ss_pred eeeeec---eeccceEEEEEee
Q 005748 332 GFKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 332 GfKsAs---~~Lg~~v~V~Sk~ 350 (679)
|++.+- -..|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 875331 2356777776643
No 55
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.11 E-value=0.0093 Score=63.73 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
++..++..||+||+.+.. ..|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 566789999999999853 567776653 234567999999999999999988753332111 1234688
Q ss_pred eeeee---ceeccceEEEEEeeC
Q 005748 332 GFKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 332 GfKsA---s~~Lg~~v~V~Sk~~ 351 (679)
|++.+ .-..|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 87532 223567777776543
No 56
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.01 E-value=0.012 Score=66.70 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..++..||+||+++....+.|.+.. ..+.-.|.|.|||.||+++++.+.+.-++.... ..+-.|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 45789999999999988888887753 223457899999999999999888753332211 1123688885
Q ss_pred eec---eeccceEEEEEe
Q 005748 335 TGA---MRLGKDALVLTQ 349 (679)
Q Consensus 335 sAs---~~Lg~~v~V~Sk 349 (679)
.+. -..|.++.|.+.
T Consensus 448 Ivk~iv~~~gG~i~v~s~ 465 (485)
T PRK10815 448 VAREITEQYEGKISAGDS 465 (485)
T ss_pred HHHHHHHHcCCEEEEEEC
Confidence 321 134556666554
No 57
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.87 E-value=0.011 Score=67.88 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCC
Q 005748 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ 317 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~ 317 (679)
-+...+-.||.||+||-+ ..|.|.... .++.-.|+|.|||.|+.++.+..+|. |-+++
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 377889999999999954 466666653 34567789999999999999999987 55544
No 58
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.74 E-value=0.022 Score=68.61 Aligned_cols=87 Identities=10% Similarity=0.170 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+. ..|..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchHH
Confidence 56789999999999853 457777653 234567899999999999999988752222111 124568887
Q ss_pred eeec---eeccceEEEEEeeCC
Q 005748 334 KTGA---MRLGKDALVLTQTAD 352 (679)
Q Consensus 334 KsAs---~~Lg~~v~V~Sk~~~ 352 (679)
..+- -.+|.++.|.|....
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~~ 604 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPGV 604 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 5322 235777888776543
No 59
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.72 E-value=0.022 Score=67.84 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
+..++..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.++|...++.+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 55789999999999864 4577766531 12345789999999999999999886333322111222345567787
Q ss_pred eee---ceeccceEEEEEeeCC
Q 005748 334 KTG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 334 KsA---s~~Lg~~v~V~Sk~~~ 352 (679)
..+ .-..|.++.|.|....
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 422 1246888888886543
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=95.63 E-value=0.022 Score=62.71 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..++.+||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+.-.+..+ ....+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~----~~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPP----GQEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCC----CCCCCccchHHH
Confidence 556799999999998765434444321 23799999999999999998875222211 112244788875
Q ss_pred ee---ceeccceEEEEEe
Q 005748 335 TG---AMRLGKDALVLTQ 349 (679)
Q Consensus 335 sA---s~~Lg~~v~V~Sk 349 (679)
-+ .-..|.++.+.+.
T Consensus 421 iv~~i~~~~gg~l~~~s~ 438 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNA 438 (449)
T ss_pred HHHHHHHHcCCEEEEEec
Confidence 32 1234666666554
No 61
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.54 E-value=0.025 Score=63.26 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEecccccCCCCC-CEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 255 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~--V~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
+..++.+|++||+.+.... |.|.+.. ..+. -.|.|.|||.||+++++.+.+...++.+. +..|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~------~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~gl 567 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ------YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE------cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCch
Confidence 5677999999999986544 4444432 1123 68999999999999999888764443321 13477
Q ss_pred eeeee---ceeccceEEEEEeeC
Q 005748 332 GFKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 332 GfKsA---s~~Lg~~v~V~Sk~~ 351 (679)
|+..+ .-.+|.++.+.|...
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEPG 590 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcCC
Confidence 76432 223567777766543
No 62
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.44 E-value=0.027 Score=67.97 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeccccc---------CCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCC
Q 005748 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~ 323 (679)
+..++..||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.+++.-.++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56779999999999743 45666665310000 0123346899999999999999988763333221
Q ss_pred CcccccCceeeee---ceeccceEEEEEeeC
Q 005748 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 324 ~~IG~fGvGfKsA---s~~Lg~~v~V~Sk~~ 351 (679)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4568887432 224677888877643
No 63
>PRK09835 sensor kinase CusS; Provisional
Probab=95.27 E-value=0.041 Score=60.85 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=56.8
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccccC
Q 005748 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~fG 330 (679)
.+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+. |-..... ....-+..|
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~G 446 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSG 446 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcc
Confidence 366789999999999854 346666653 22345789999999999999988875 3222211 111224578
Q ss_pred ceeeee---ceeccceEEEEEe
Q 005748 331 VGFKTG---AMRLGKDALVLTQ 349 (679)
Q Consensus 331 vGfKsA---s~~Lg~~v~V~Sk 349 (679)
+|+.-+ .-..|.++.+.|.
T Consensus 447 lGL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 447 IGLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred hHHHHHHHHHHHCCCEEEEEEC
Confidence 888432 2235666777664
No 64
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.24 E-value=0.044 Score=65.31 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++..||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++.-..+.+.. .....+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 55679999999999854 346665542 2345578999999999999999988643332211 11122347888
Q ss_pred eeee---ceeccceEEEEEee
Q 005748 333 FKTG---AMRLGKDALVLTQT 350 (679)
Q Consensus 333 fKsA---s~~Lg~~v~V~Sk~ 350 (679)
++.+ ....|.++.+.+..
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8543 22456677776654
No 65
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.21 E-value=0.049 Score=50.67 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccc
Q 005748 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~ 328 (679)
.+-.++.||+.||+..+ ...|.|.+.. ..+.-.+.|.|+|.||+. +.+.+....+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35678999999999753 2456776653 233567899999999973 3344332222221 1234
Q ss_pred cCceeeeeceeccceEEEEEe
Q 005748 329 FGVGFKTGAMRLGKDALVLTQ 349 (679)
Q Consensus 329 fGvGfKsAs~~Lg~~v~V~Sk 349 (679)
-|+|+.. .-+++.++.+.+.
T Consensus 106 ~GlGL~l-v~~~~~~l~~~~~ 125 (137)
T TIGR01925 106 SGMGFTV-MENFMDDVSVDSE 125 (137)
T ss_pred CcccHHH-HHHhCCcEEEEEC
Confidence 5777742 2234455555543
No 66
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.08 E-value=0.046 Score=57.91 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccc--cCCCC----CCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCccc
Q 005748 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFK--KAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-At~V~I~I~~~~~~--~~~~~----~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG 327 (679)
+..++..||+||+.+. .....|.+...... ....+ ...|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5678999999999975 33333433211000 00001 135899999999999998887753333221 2
Q ss_pred ccCceeeee---ceeccceEEEEEee
Q 005748 328 RFGVGFKTG---AMRLGKDALVLTQT 350 (679)
Q Consensus 328 ~fGvGfKsA---s~~Lg~~v~V~Sk~ 350 (679)
.-|+|+..+ .-..|.++.|.|..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 247777422 22456777776643
No 67
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.06 E-value=0.049 Score=65.83 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
+..++..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.+...+... ...|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCcccH
Confidence 45678999999999853 456666653 22345689999999999999998875322211 1124568887
Q ss_pred eee---ceeccceEEEEEeeCC
Q 005748 334 KTG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 334 KsA---s~~Lg~~v~V~Sk~~~ 352 (679)
..+ .-.+|.++.|.|...+
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 432 2246888888876543
No 68
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.91 E-value=0.055 Score=65.70 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=60.4
Q ss_pred CHHHHHHHHHhcccccCC-CccEEEEEecccccCCCCC-CEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccccC
Q 005748 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~fG 330 (679)
.+..++..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+++. |..... ....|..|
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~G 648 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTG 648 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCcc
Confidence 355679999999999854 457777653 1223 6799999999999999999875 443321 12235568
Q ss_pred ceeeee---ceeccceEEEEEeeCC
Q 005748 331 VGFKTG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 331 vGfKsA---s~~Lg~~v~V~Sk~~~ 352 (679)
+|+..+ .-.+|.++.|.|....
T Consensus 649 LGL~i~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 649 LGLAISQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 887532 2246788888876543
No 69
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.87 E-value=0.061 Score=63.84 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=54.5
Q ss_pred HHHHHHHHhcccccCC--------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh------------
Q 005748 256 FGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------ 309 (679)
Q Consensus 256 f~AIaELIDNS~DA~A--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~------------ 309 (679)
..+|..||.||+|+|- ..|.|.... .++.-.|.|.|||.||+++.+.+
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ 460 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSEN 460 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCcccc
Confidence 3447799999999862 245565542 23445689999999999987653
Q ss_pred ---------hhhcccCCCCCCCCCcccccCceeee---eceeccceEEEEEeeC
Q 005748 310 ---------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTA 351 (679)
Q Consensus 310 ---------~l~fG~S~k~~~d~~~IG~fGvGfKs---As~~Lg~~v~V~Sk~~ 351 (679)
.|.-|++.+.. ...+.-.|+|+.- ..-.+|..+.|.|...
T Consensus 461 ls~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 461 MSDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred CCHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 22334444321 1223445888732 2335777888877543
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=94.84 E-value=0.051 Score=66.52 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At--~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
.+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+. ....+-.|+
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GL 848 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGL 848 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccH
Confidence 3567799999999998644 45665542 234457899999999999999888753232221 112234677
Q ss_pred eeeee---ceeccceEEEEEeeC
Q 005748 332 GFKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 332 GfKsA---s~~Lg~~v~V~Sk~~ 351 (679)
|+..+ .-..|.++.+.|...
T Consensus 849 GL~Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 849 GLAICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHHHHcCCEEEEEECCC
Confidence 87432 113567777776443
No 71
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.48 E-value=0.083 Score=64.92 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~fGvG 332 (679)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++. |-..... .....+-.|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 55789999999999853 346666543 22345689999999999999998875 3222111 11122346888
Q ss_pred eeee---ceeccceEEEEEeeCC
Q 005748 333 FKTG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 333 fKsA---s~~Lg~~v~V~Sk~~~ 352 (679)
+..+ .-..|.++.|.|....
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g~ 657 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPGM 657 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCC
Confidence 7532 1246788888886543
No 72
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.43 E-value=0.088 Score=63.37 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++..||+||+.+.. ..|.|.+.... .......-.|.|.|||.||+++++.+.+. |-..... .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRA-LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEe-cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 55789999999999854 34555554211 00011124588999999999999998875 4322111 11234567888
Q ss_pred eeee---ceeccceEEEEEeeCC
Q 005748 333 FKTG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 333 fKsA---s~~Lg~~v~V~Sk~~~ 352 (679)
+.-+ .-..|.++.|.|....
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 7432 2246888888887653
No 73
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=94.19 E-value=0.11 Score=57.29 Aligned_cols=88 Identities=22% Similarity=0.425 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCC--C
Q 005748 255 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--D 322 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~----------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~--d 322 (679)
+.-.+-||..||..|- -..|.|.+-. +++...+.|.|-|+|++++++..++.|++|..... +
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 3455889999999992 2347777753 44567889999999999999999999998864321 1
Q ss_pred ---CCcccccCceeeeece---eccceEEEEE
Q 005748 323 ---PNRIGRFGVGFKTGAM---RLGKDALVLT 348 (679)
Q Consensus 323 ---~~~IG~fGvGfKsAs~---~Lg~~v~V~S 348 (679)
.....-||-|+-.+-+ .+|.++.+.|
T Consensus 335 ~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~S 366 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLPISRLYARYFGGDLKLQS 366 (414)
T ss_pred CCCcCcccccccCCcHHHHHHHHhCCCeeEEe
Confidence 3345556666643221 2345555544
No 74
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.78 E-value=0.16 Score=62.32 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++..||+||+.+.+ ..|.|.+.... ...+.-.|.|.|+|.||+++++.+++. |-. .+. ....-+--|+|
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~~---~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~~--~~~~~~GtGLG 639 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQDE---SSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QTQ--GDRYGKASGLT 639 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcc---CCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CCC--CCCCCCCcChh
Confidence 55778999999999854 35666665310 011345689999999999999999875 432 221 11112235777
Q ss_pred eeee---ceeccceEEEEEeeCC
Q 005748 333 FKTG---AMRLGKDALVLTQTAD 352 (679)
Q Consensus 333 fKsA---s~~Lg~~v~V~Sk~~~ 352 (679)
+..+ .-.+|.++.|.|....
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCC
Confidence 6322 2246888999887654
No 75
>PRK03660 anti-sigma F factor; Provisional
Probab=93.33 E-value=0.24 Score=46.48 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.3
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCH
Q 005748 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (679)
.+..++.|++.||+..+. ..|.|.+.. ..+.-.+.|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 355789999999997542 346666542 223456899999999975
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.24 E-value=0.19 Score=62.76 Aligned_cols=94 Identities=11% Similarity=0.150 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhcccccCCC-ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 254 WIFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At-~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
.+..++..||+||+++... .+.|.+.... .......-.|.|.|||.||+++++.+++...++.+. ....+..|+|
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLG 903 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGH-IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLG 903 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEee-ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCch
Confidence 3567899999999998643 3455443210 000111235789999999999999998753222221 1122346888
Q ss_pred eeee---ceeccceEEEEEeeC
Q 005748 333 FKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 333 fKsA---s~~Lg~~v~V~Sk~~ 351 (679)
+..+ .-..|.++.|.|...
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCC
Confidence 7532 124677888887654
No 77
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.05 E-value=0.21 Score=48.63 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccc
Q 005748 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~ 328 (679)
.+--|+.|++.||+..+- ..|.|.+.. ..+.-.+.|.|+|.|++++.+...+......... +... .
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-~~~~--~ 112 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-DDLR--E 112 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCCc-ccCC--C
Confidence 456789999999998852 356666653 2345678899999999988776543321111110 1111 2
Q ss_pred cCceeeeeceeccceEEEEE
Q 005748 329 FGVGFKTGAMRLGKDALVLT 348 (679)
Q Consensus 329 fGvGfKsAs~~Lg~~v~V~S 348 (679)
-|.|+...- ++.+++.+.+
T Consensus 113 ~G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 113 GGLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred CccCHHHHH-HhccEEEEEe
Confidence 377874332 4778877765
No 78
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.05 E-value=0.16 Score=49.38 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh
Q 005748 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (679)
+-.|+.|++.||+..+- ..|.|.+.. ..+.-.+.|.|+|.||+++.+...+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccC
Confidence 55789999999998864 246666553 23467889999999999888766554
No 79
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.89 E-value=0.21 Score=45.63 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=50.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccc
Q 005748 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~ 328 (679)
.+.-|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++........-.. .....
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~--------~~~~~ 96 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP--------DSLRE 96 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC--------CCCCC
Confidence 3568999999999998653 46666543 33467789999999999887544321110 12223
Q ss_pred cCceeeeeceeccceEEE
Q 005748 329 FGVGFKTGAMRLGKDALV 346 (679)
Q Consensus 329 fGvGfKsAs~~Lg~~v~V 346 (679)
-|.|+.. .-++.+++.+
T Consensus 97 ~G~Gl~l-i~~l~D~~~~ 113 (125)
T PF13581_consen 97 GGRGLFL-IRSLMDEVDY 113 (125)
T ss_pred CCcCHHH-HHHHHcEEEE
Confidence 3666632 2246788877
No 80
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.82 E-value=0.12 Score=56.27 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=52.4
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 254 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA-~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
.++-++.|.|.|++.. +|+++.|.+.. ..+.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 4778899999999986 78999999975 3355789999999998765421 2 334
Q ss_pred eee---eceeccceEEEEEee
Q 005748 333 FKT---GAMRLGKDALVLTQT 350 (679)
Q Consensus 333 fKs---As~~Lg~~v~V~Sk~ 350 (679)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 233578888888876
No 81
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=92.77 E-value=0.15 Score=58.49 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~D-A~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
...-++|-+.||+. |.|++|+|.+.. ..+...+.|+|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 34458999999997 589999999874 3377899999999999764 24567887664
Q ss_pred ee-eceeccceEEEEEeeCCC
Q 005748 334 KT-GAMRLGKDALVLTQTADS 353 (679)
Q Consensus 334 Ks-As~~Lg~~v~V~Sk~~~~ 353 (679)
-. =+-+++..+.|..+..+.
T Consensus 539 M~ERA~~L~~~L~i~~~~~gG 559 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGGG 559 (574)
T ss_pred HHHHHHHhcCeEEEeecCCCC
Confidence 11 122577778777766554
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.15 E-value=0.35 Score=57.93 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=66.4
Q ss_pred eeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC--------------CccEEEEEecccccCCCCCCEEEEEeCCC
Q 005748 235 NFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGH 300 (679)
Q Consensus 235 ~~~~v~p~~L~slst~~i~~~f~AIaELIDNS~DA~A--------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~ 300 (679)
...-++..+|..++ ..|..||-||+|.|- -.|.+.-.. .++.-.|.|.|||.
T Consensus 421 ~~telDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~ 486 (716)
T COG0643 421 EDTELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGA 486 (716)
T ss_pred CCeeehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCC
Confidence 34566777776653 237889999999973 244444432 34556789999999
Q ss_pred CCCHHHHHh-hhh-----------------------cccCCCCCCCCCcccccCcee---eeeceeccceEEEEEeeCC
Q 005748 301 GMTHQDVVR-MTY-----------------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTAD 352 (679)
Q Consensus 301 GMt~eeL~~-~l~-----------------------fG~S~k~~~d~~~IG~fGvGf---KsAs~~Lg~~v~V~Sk~~~ 352 (679)
||+++.+.+ ++. -|+|.+. .-..+.--|||| |+..-+||..+.|.|+...
T Consensus 487 Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 487 GIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred CCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 999998764 332 2444432 123344458997 5666678888888886654
No 83
>PRK13557 histidine kinase; Provisional
Probab=91.83 E-value=0.31 Score=54.36 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeccccc---------CCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCC
Q 005748 255 IFGAIAELVDNSRDAKATK--LEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~--V~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~ 323 (679)
+..++..|+.||+++.... +.|......... ..++.-.|.|.|||.||+++...+++...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 4567999999999985533 444332110000 0112346899999999999999888764443321
Q ss_pred CcccccCceeeee---ceeccceEEEEEeeC
Q 005748 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 324 ~~IG~fGvGfKsA---s~~Lg~~v~V~Sk~~ 351 (679)
..+..|+|+..+ .-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 123457776422 234678888877543
No 84
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.28 E-value=0.27 Score=56.21 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
+..++.|+++||+.+. +..|.|.+.. .++.-.|.|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5677899999999864 4667777653 2344678999999999864
No 85
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=90.13 E-value=0.36 Score=54.56 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhh
Q 005748 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (679)
.|--.|-=|||||+-||- ....|.+.... ..+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 366668889999999973 33445444311 2345678899999999998876653
No 86
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=90.13 E-value=0.79 Score=55.10 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCC
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ 317 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~ 317 (679)
+..+|..|||||.....+..+|.|.... ..+.-.+.|.|+|.|++.+++.+.|. |-...
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~----~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~ 835 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGV----ERENVVFSVIDEGPGIPEGELERIFDKFYRGN 835 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEE----ecceEEEEEEeCCCCCChhHHHHhhhhhhcCC
Confidence 3467899999999986554444443211 33566789999999999999999885 54433
No 87
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=90.11 E-value=0.17 Score=46.17 Aligned_cols=45 Identities=16% Similarity=0.538 Sum_probs=35.6
Q ss_pred Ccccccc-CC--CCCchhhhHHHHHHHhhcCCeEEEEEece------eEEEEeC
Q 005748 70 SHCFLSP-AP--ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 114 (679)
Q Consensus 70 ~~~~~~p-~~--~~~~~~~ew~~f~~~l~~~~~~~~~~~~~------~~~~~~~ 114 (679)
-.+++++ .| .++.+...+.+|..||...+|+|||.++. ..+||+|
T Consensus 66 ~v~v~~~~~~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 66 DVCVVALSSPESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred eEEEEEEcCCcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4455555 34 67888999999999999999999999995 8899988
No 88
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=89.47 E-value=0.35 Score=55.77 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 005748 254 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA-~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (679)
++..++.|+|+||+.+ .++.|.|.+.. .++.-.|.|.|||.||+++.
T Consensus 469 ~l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 469 HLLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCccc
Confidence 3667899999999986 45677777753 23456789999999998753
No 89
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.35 E-value=0.39 Score=49.47 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHHHHhcccccCC-----CccEEEEEecccccCCCC-CCEEEEEeCCCCCCHH
Q 005748 257 GAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 257 ~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~-~~~L~I~DNG~GMt~e 305 (679)
-++.||+.||+..++ .+|.|.+... ..+ ...+.|+|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 458999999999876 3577776641 112 3689999999998653
No 90
>PRK13560 hypothetical protein; Provisional
Probab=86.32 E-value=0.64 Score=54.68 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=30.9
Q ss_pred HHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 257 GAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 257 ~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
..|.+|+.||+++.. ..|.|.+... ..+.-.|+|.|||.||+++
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~~-----~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIREQ-----GDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEEc-----CCCEEEEEEEeCCCcCCcc
Confidence 367899999999732 3455555421 1334578999999999885
No 91
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.13 E-value=1.5 Score=42.55 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=51.3
Q ss_pred cCHHHHHHHHHhcccccCC------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcc
Q 005748 253 GWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 326 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA~A------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~I 326 (679)
..+-.|+.|++.|++.++- ..|.|.+.. ..+.-.++|+|.|.|+. ++...+.-+.... .....
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~---~~~~~ 107 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGIE--DLEESLGPGDTTA---EGLQE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCCC--CHHHhcCCCCCCC---ccccc
Confidence 4567999999999998742 345555543 33567889999996654 4445544442221 11223
Q ss_pred cccCceeeeeceeccceEEEEEeeC
Q 005748 327 GRFGVGFKTGAMRLGKDALVLTQTA 351 (679)
Q Consensus 327 G~fGvGfKsAs~~Lg~~v~V~Sk~~ 351 (679)
| |+|| ....++.+++.+.....
T Consensus 108 ~--G~Gl-~l~~~~~D~~~~~~~~~ 129 (146)
T COG2172 108 G--GLGL-FLAKRLMDEFSYERSED 129 (146)
T ss_pred c--cccH-HHHhhhheeEEEEeccC
Confidence 3 6666 34445677777764333
No 92
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=84.94 E-value=1.1 Score=52.31 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh
Q 005748 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (679)
+-.|+..|+.||.+|.+ ..+.+..+. .++.-.+.|.|||.|.+.+..++++.
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 44678899999999843 124444442 34567789999999999999999874
No 93
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=83.85 E-value=1.9 Score=49.00 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhcccccCCC---ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCC
Q 005748 254 WIFGAIAELVDNSRDAKAT---KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At---~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k 318 (679)
.+...+..|+-||+||..+ .|+|.... ...+..+|.|.|||.|-+.+-+.+.+..-+++|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 4677899999999999654 45554432 134577899999999999988888887433333
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=79.06 E-value=2.4 Score=46.82 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=49.3
Q ss_pred HHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCcccccCce
Q 005748 256 FGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 256 f~AIaELIDNS~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG~fGvG 332 (679)
...|-.+|.||+-.+ ..+|.|.+.. ....-.++|.|.|.|++++++.+.|. |-.-.+. .....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 456788899999875 3567776653 22345689999999999999999884 5443332 23456666778
Q ss_pred ee
Q 005748 333 FK 334 (679)
Q Consensus 333 fK 334 (679)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 95
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=78.91 E-value=3.7 Score=45.06 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=49.2
Q ss_pred HHHHHHHhccc-----ccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCc
Q 005748 257 GAIAELVDNSR-----DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (679)
Q Consensus 257 ~AIaELIDNS~-----DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGv 331 (679)
+|+--.++-|+ -|||++|.|.+.. ..+.-.+.|.|||.|.+..+..+- +.|+
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~-----------------~~Gi 414 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQK-----------------RHGI 414 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccC-----------------cccc
Confidence 44444444444 3599999998873 456778999999999988775332 1478
Q ss_pred eeeee--ce-eccceEEEEEeeCCC
Q 005748 332 GFKTG--AM-RLGKDALVLTQTADS 353 (679)
Q Consensus 332 GfKsA--s~-~Lg~~v~V~Sk~~~~ 353 (679)
|++-- -| .+|..+.|.|-..|+
T Consensus 415 GLRNMrERma~~GG~~~v~s~p~GT 439 (459)
T COG4564 415 GLRNMRERMAHFGGELEVESSPQGT 439 (459)
T ss_pred ccccHHHHHHHhCceEEEEecCCCc
Confidence 87521 11 368888888866554
No 96
>PRK13559 hypothetical protein; Provisional
Probab=78.30 E-value=2.1 Score=45.79 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
+..++.||+.||+.+++ ..|.|.+... ...+...|.+.|||.|++++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45679999999999854 3566665211 12345678899999997653
No 97
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=77.40 E-value=3.2 Score=48.83 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcccccCC---CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh
Q 005748 255 IFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A---t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (679)
+-..+..||.||+..+. +.|.|..+. ..+..++.|.|||.|++++-+.+.|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHHHH
Confidence 34557899999998865 456776654 34578899999999999999999875
No 99
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=77.24 E-value=2.5 Score=48.01 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
....+.+|+.||+.+.. ..+.|.+... ..+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~-----~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTN-----PDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEc-----CCCEEEEEEEECCcCcCCC
Confidence 45678999999998643 4566666421 1234568999999999863
No 100
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=64.41 E-value=9.4 Score=41.73 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccccCCC----ccEEEEEecccc--cCCC----CCCEEEEEeCCCCCCHHHHHhhhh
Q 005748 255 IFGAIAELVDNSRDAKAT----KLEISIESIYFK--KAGK----DIPMLSIIDDGHGMTHQDVVRMTY 312 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At----~V~I~I~~~~~~--~~~~----~~~~L~I~DNG~GMt~eeL~~~l~ 312 (679)
+..|+-.||.||..|.+. .=.|.+...+-. +..+ -.-.|.|.|||.|++++-....|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 678899999999999762 122322211000 0001 123477999999999877777765
No 101
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=59.30 E-value=10 Score=42.32 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCH
Q 005748 255 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (679)
Q Consensus 255 ~f~AIaELIDNS~D-A~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (679)
.+-..-|++.|-.. |.|+.|+|.+-. +++.-.+.|+|||.|++.
T Consensus 411 LyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 411 LYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPP 455 (497)
T ss_pred HHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCC
Confidence 67778999999774 689999998863 334578999999999865
No 102
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=48.09 E-value=3.4 Score=32.19 Aligned_cols=34 Identities=24% Similarity=0.677 Sum_probs=22.8
Q ss_pred CCCCceeccchhhhhhcCCC-CCC--C-CCCCCccccc
Q 005748 641 KPDQEWVQCNKCRKWRMLDP-GFD--T-KSLPVEWYSH 674 (679)
Q Consensus 641 ~~~~~wvQCd~C~KWR~lp~-~~~--~-~~lp~~W~C~ 674 (679)
.....|||||.|.+|-+..= +.. . ..+...|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 35678999999999987652 221 1 2233489984
No 103
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=46.13 E-value=24 Score=40.74 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=39.5
Q ss_pred eecCHHHHHHhhcccccCHHHHHHHHHhcccccCC------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 237 VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 237 ~~v~p~~L~slst~~i~~~f~AIaELIDNS~DA~A------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
+.+++++-.- ++ |.--|-=||+||+-.|- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 445 i~id~~l~~~----~i--P~filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 445 IDIDEELRQV----QI--PSFILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred EecCHHHhhc----cC--chhhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 4566665543 23 22337889999998863 467777764 2345788999999999886
No 104
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=37.92 E-value=14 Score=34.53 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhcCC
Q 005748 82 RDHNEWRRFLIYLQGRD 98 (679)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (679)
+...+|++||||..+++
T Consensus 91 ~s~~~WdRFMRFMeRYA 107 (113)
T PRK13610 91 NSEEAFERFMRFASRYA 107 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998775
No 105
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=37.71 E-value=12 Score=34.72 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhhcCC
Q 005748 84 HNEWRRFLIYLQGRD 98 (679)
Q Consensus 84 ~~ew~~f~~~l~~~~ 98 (679)
..+|++||||+.+++
T Consensus 86 ~~~WdRFMRFMeRYA 100 (108)
T PF03912_consen 86 EEEWDRFMRFMERYA 100 (108)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999998764
No 106
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=37.22 E-value=16 Score=34.20 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005748 82 RDHNEWRRFLIYLQGRD 98 (679)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (679)
+...+|++||||..+++
T Consensus 85 ~s~~~WdRFMRFMeRYA 101 (111)
T PLN00039 85 RSPREWDRFMRFMERYA 101 (111)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 107
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=36.16 E-value=1.2e+02 Score=37.18 Aligned_cols=45 Identities=18% Similarity=0.430 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcccc----cCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH
Q 005748 255 IFGAIAELVDNSRD----AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (679)
Q Consensus 255 ~f~AIaELIDNS~D----A~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (679)
++..+-|.+.||.| ++-..+.+.|+. +...+.|.+||.|++-+..
T Consensus 54 l~ki~dEilvNaadk~rd~~m~~i~v~i~~--------e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAADKQRDPKMNTIKVTIDK--------EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccccccCCCcceeEEEEcc--------CCCEEEEEeCCCcceeeec
Confidence 44558899999998 223456666653 4678999999999987654
No 108
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=36.14 E-value=17 Score=34.12 Aligned_cols=17 Identities=24% Similarity=0.792 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005748 82 RDHNEWRRFLIYLQGRD 98 (679)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (679)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T PRK13612 87 KSEQEWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 109
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=35.97 E-value=18 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005748 82 RDHNEWRRFLIYLQGRD 98 (679)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (679)
+...+|++||||..+++
T Consensus 84 ~s~~~WdRFMRFmeRYA 100 (109)
T TIGR03047 84 KSEDEWDRFMRFMERYA 100 (109)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 110
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=35.60 E-value=17 Score=33.53 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHhhcCC
Q 005748 82 RDHNEWRRFLIYLQGRD 98 (679)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (679)
+...+|++||||..+++
T Consensus 80 ~s~~~wdRFMRFmeRYA 96 (104)
T PRK13611 80 ETEAEWDRFLRFMERFS 96 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35679999999998775
No 111
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=34.91 E-value=18 Score=33.92 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005748 82 RDHNEWRRFLIYLQGRD 98 (679)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (679)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T CHL00128 87 KNPEAWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 112
>PF14501 HATPase_c_5: GHKL domain
Probab=30.34 E-value=88 Score=27.58 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCC
Q 005748 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHG 301 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~G 301 (679)
+-..+.-|+|||++|. .+.|.|.+.. ..+...|.|.-...+
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~------~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIRE------ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCC
Confidence 4466899999999983 3456666553 223445555554333
No 113
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=27.45 E-value=71 Score=36.94 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhccccc-----CCCccEEEEEecccccCCCCCCEEEEEeCCC---CCCHHHHHhhhhcccCCCCC-----
Q 005748 254 WIFGAIAELVDNSRDA-----KATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPDA----- 320 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA-----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~---GMt~eeL~~~l~fG~S~k~~----- 320 (679)
.|..|++|+|-||+-. ....|.|.+. .+.|.|.-.|. ||+++++.+- .|..+.
T Consensus 270 yP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA~ 335 (467)
T COG2865 270 YPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLAK 335 (467)
T ss_pred CCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHHH
Confidence 4789999999999954 2347888776 36899998886 8888776553 222211
Q ss_pred --CCCCcccccCceee
Q 005748 321 --DDPNRIGRFGVGFK 334 (679)
Q Consensus 321 --~d~~~IG~fGvGfK 334 (679)
.+.+.+-++|-|+.
T Consensus 336 ~l~~~~liE~~GSGi~ 351 (467)
T COG2865 336 VLRDMGLIEERGSGIR 351 (467)
T ss_pred HHHHhhhHHHhCccHH
Confidence 13466778999975
No 114
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=24.88 E-value=79 Score=33.08 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=50.6
Q ss_pred CCccccccccccccee-e--ccCCCccccccCCCCCchhhhHHHHHHHhhcCCeEEEEEecee-----EEEEeCCC
Q 005748 49 LPHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFW-----EFYILPPD 116 (679)
Q Consensus 49 ~p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~~~~~~~-----~~~~~~~~ 116 (679)
-+..+.|.+|+|.+-+ . +.+.++.+. |.........--.-+.+=|...++|||+++-.- .+..|-|.
T Consensus 87 ~~~~l~ilgF~~~~~i~~~~~~~~s~~l~-P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~ 161 (272)
T cd00594 87 TSKGLDILGFVPASEIPPYYFDKESYYLV-PDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQ 161 (272)
T ss_pred CCCeEEEEeEechHhCCcceecCCcEEEE-cCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEecc
Confidence 4567889999999988 3 555566666 777655666677888899999999999998654 36666565
No 115
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=23.41 E-value=89 Score=29.83 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=46.6
Q ss_pred Cccccccccccccee-e--ccCCCccccccCCCC-CchhhhHHHHHHHhhcCCeEEEEEece-----eEEEEeCCC
Q 005748 50 PHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPEC-SRDHNEWRRFLIYLQGRDMVAIAKFKF-----WEFYILPPD 116 (679)
Q Consensus 50 p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~-~~~~~ew~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~ 116 (679)
+..+.|.+|+|.+-+ . ++++++.+. |.+.. .....--.-+.+=|...++||||++-. -.+-.|-|.
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~ 109 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPY 109 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEee
Confidence 578899999999988 2 445556666 77753 224445556777789999999999832 456666665
No 116
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=20.93 E-value=86 Score=26.44 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.1
Q ss_pred CCCccccccCCCCCchhhhHHHHHHHhhcCCeEEE
Q 005748 68 GMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAI 102 (679)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~ 102 (679)
+.+=++-+|.| +++-++-=.+||+||+=...=|.
T Consensus 11 ~r~G~~~r~l~-d~nivrTiiEFLtfLhLKEaGAL 44 (62)
T PF06540_consen 11 FRPGSFDRPLA-DDNIVRTIIEFLTFLHLKEAGAL 44 (62)
T ss_pred cccccccCCCc-hhHHHHHHHHHHHHHHHHHhcch
Confidence 34446667888 56778899999999986665443
Done!