Query 005748
Match_columns 679
No_of_seqs 352 out of 2230
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmq_A Heat shock protein HSP 99.9 2.4E-22 8.2E-27 204.8 8.5 171 234-415 18-218 (239)
2 3peh_A Endoplasmin homolog; st 99.9 3.1E-22 1.1E-26 207.9 9.5 170 235-415 26-227 (281)
3 1y4s_A Chaperone protein HTPG; 99.8 3E-20 1E-24 209.5 22.0 173 234-415 6-209 (559)
4 3ied_A Heat shock protein; HSP 99.8 6.3E-21 2.2E-25 195.3 8.6 169 235-415 27-268 (272)
5 1qy5_A Endoplasmin; GRP94, NEC 99.8 4.2E-21 1.5E-25 199.0 6.7 167 237-415 10-212 (269)
6 3t0h_A Heat shock protein HSP 99.8 5.8E-21 2E-25 193.7 7.2 171 234-415 11-211 (228)
7 2ioq_A Chaperone protein HTPG; 99.8 2E-19 6.9E-24 205.1 18.6 171 236-415 8-209 (624)
8 2gqp_A Endoplasmin; GRP94, HSP 99.8 1.7E-20 5.7E-25 191.1 8.7 169 235-415 12-216 (236)
9 3o0i_A HSP90AA1 protein; HSP90 99.8 1.5E-20 5E-25 193.4 7.3 171 234-415 39-239 (256)
10 1yc1_A HSP 86, heat shock prot 99.8 5.4E-20 1.8E-24 190.3 9.3 164 241-415 55-247 (264)
11 2wer_A ATP-dependent molecular 99.8 6.7E-20 2.3E-24 184.4 9.7 169 236-415 7-206 (220)
12 2cg9_A ATP-dependent molecular 99.8 3.5E-19 1.2E-23 204.1 12.3 170 235-415 6-206 (677)
13 2ior_A Chaperone protein HTPG; 99.8 2.8E-19 9.7E-24 181.8 8.1 170 237-415 29-229 (235)
14 2o1u_A Endoplasmin; GRP94, HSP 99.7 5.3E-19 1.8E-23 202.5 6.5 161 243-415 34-229 (666)
15 1b63_A MUTL; DNA mismatch repa 99.6 1.7E-14 5.9E-19 153.5 19.9 111 234-353 3-119 (333)
16 3na3_A DNA mismatch repair pro 99.5 5.1E-13 1.7E-17 143.1 19.0 109 236-353 9-123 (348)
17 3h4l_A DNA mismatch repair pro 99.3 1.1E-12 3.9E-17 141.4 8.6 139 236-387 6-150 (367)
18 2e61_A Zinc finger CW-type PWW 99.3 6.6E-13 2.2E-17 110.8 3.8 42 637-678 9-52 (69)
19 1h7s_A PMS1 protein homolog 2; 99.3 7.9E-12 2.7E-16 134.8 9.8 140 236-387 15-160 (365)
20 2l7p_A Histone-lysine N-methyl 99.2 3.4E-12 1.1E-16 113.5 -0.1 41 638-678 20-61 (100)
21 1ei1_A DNA gyrase B, GYRB; ATP 99.0 2.9E-09 1E-13 115.7 15.3 89 254-352 34-137 (391)
22 3cwv_A DNA gyrase, B subunit, 98.9 2.2E-08 7.5E-13 108.1 16.5 87 253-353 29-121 (369)
23 3fv5_A DNA topoisomerase 4 sub 98.8 4.2E-09 1.4E-13 104.7 8.4 157 255-436 18-192 (201)
24 1kij_A DNA gyrase subunit B; t 98.8 4E-08 1.4E-12 106.8 16.0 89 254-352 32-135 (390)
25 1s16_A Topoisomerase IV subuni 98.8 2.2E-07 7.4E-12 101.1 20.9 119 256-388 33-169 (390)
26 1zxm_A TOPO IIA ATPase, DNA to 98.6 4.7E-08 1.6E-12 106.5 9.4 89 254-351 52-156 (400)
27 4duh_A DNA gyrase subunit B; s 98.6 8.5E-08 2.9E-12 96.7 8.0 158 254-437 35-210 (220)
28 4emv_A DNA topoisomerase IV, B 98.5 1.7E-07 5.7E-12 94.9 9.1 177 234-437 22-216 (226)
29 1mu5_A Type II DNA topoisomera 98.4 7.2E-07 2.5E-11 99.1 9.8 96 254-353 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 9.5E-07 3.3E-11 99.5 8.9 96 254-353 31-136 (530)
31 3lnu_A Topoisomerase IV subuni 98.3 8.3E-07 2.8E-11 96.9 6.6 120 256-389 52-189 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.1 2.1E-06 7.2E-11 98.3 6.3 131 254-389 37-181 (621)
33 3ttz_A DNA gyrase subunit B; p 97.9 2.1E-05 7.2E-10 78.0 8.4 146 254-437 31-183 (198)
34 1pvg_A DNA topoisomerase II; G 97.9 1.7E-05 5.9E-10 86.9 8.5 123 255-390 65-208 (418)
35 1id0_A PHOQ histidine kinase; 97.7 5.6E-05 1.9E-09 68.6 7.0 85 255-350 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.6 0.0001 3.6E-09 67.9 6.9 88 255-351 48-138 (161)
37 2c2a_A Sensor histidine kinase 97.4 0.00016 5.5E-09 71.7 5.8 90 255-351 139-236 (258)
38 1ysr_A Sensor-type histidine k 97.3 0.00027 9.3E-09 64.2 6.4 86 255-350 47-136 (150)
39 1i58_A Chemotaxis protein CHEA 97.3 7.9E-05 2.7E-09 70.7 2.1 47 255-307 48-108 (189)
40 2q8g_A [pyruvate dehydrogenase 97.3 0.00023 7.9E-09 76.7 6.0 91 255-351 244-351 (407)
41 4ew8_A Sensor protein DIVL; si 97.3 0.00035 1.2E-08 69.2 6.9 83 255-350 156-243 (268)
42 1th8_A Anti-sigma F factor; SP 97.2 0.00035 1.2E-08 63.6 5.4 83 254-350 39-126 (145)
43 3d36_A Sporulation kinase B; G 97.2 0.00044 1.5E-08 67.2 6.3 85 255-351 124-213 (244)
44 2btz_A Pyruvate dehydrogenase 97.1 0.00029 1E-08 75.4 4.9 91 255-351 232-338 (394)
45 3a0y_A Sensor protein; ATP-LID 97.1 0.00032 1.1E-08 63.3 4.4 82 255-349 48-135 (152)
46 2e0a_A Pyruvate dehydrogenase 97.1 0.00032 1.1E-08 75.3 5.0 91 255-351 231-338 (394)
47 3jz3_A Sensor protein QSEC; he 97.1 0.00033 1.1E-08 67.0 4.3 84 255-350 118-204 (222)
48 1y8o_A [pyruvate dehydrogenase 97.1 0.00033 1.1E-08 75.9 4.7 90 255-350 254-361 (419)
49 3sl2_A Sensor histidine kinase 97.1 0.00039 1.3E-08 65.2 4.4 92 255-351 44-140 (177)
50 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.00024 8.1E-09 75.9 3.1 91 255-351 239-361 (388)
51 1b3q_A Protein (chemotaxis pro 96.9 0.0007 2.4E-08 72.6 5.8 89 255-351 107-236 (379)
52 1r62_A Nitrogen regulation pro 96.9 0.00023 7.7E-09 64.7 0.9 89 255-350 49-147 (160)
53 3ehh_A Sensor kinase (YOCF pro 96.6 0.0012 4.1E-08 63.4 3.7 71 255-350 131-205 (218)
54 3a0r_A Sensor protein; four he 96.5 0.0016 5.5E-08 66.6 4.3 82 255-349 245-332 (349)
55 3zxo_A Redox sensor histidine 96.3 0.0036 1.2E-07 55.2 4.7 69 254-351 43-115 (129)
56 4gfh_A DNA topoisomerase 2; to 96.2 0.011 3.8E-07 72.3 10.2 84 257-349 62-161 (1177)
57 3ehg_A Sensor kinase (YOCF pro 96.2 0.0023 7.9E-08 57.0 3.2 71 255-350 41-115 (128)
58 3zxq_A Hypoxia sensor histidin 95.7 0.0068 2.3E-07 53.1 3.8 46 254-306 39-85 (124)
59 4fpp_A Phosphotransferase; fou 92.2 0.094 3.2E-06 52.2 4.1 82 255-349 147-235 (247)
60 3o70_A PHD finger protein 13; 91.0 0.089 3E-06 43.4 2.0 32 643-674 30-62 (68)
61 3o7a_A PHD finger protein 13 v 90.1 0.088 3E-06 40.9 1.1 32 643-674 15-47 (52)
62 1we9_A PHD finger family prote 88.7 0.17 5.7E-06 40.7 1.8 33 642-674 18-53 (64)
63 2lv9_A Histone-lysine N-methyl 88.4 0.19 6.3E-06 44.2 2.1 33 643-675 39-72 (98)
64 1wee_A PHD finger family prote 87.1 0.21 7.1E-06 41.3 1.5 31 644-674 29-61 (72)
65 3ke6_A Protein RV1364C/MT1410; 83.0 0.79 2.7E-05 49.2 4.1 47 254-305 297-348 (399)
66 2kgg_A Histone demethylase jar 80.1 0.3 1E-05 37.9 -0.4 35 640-674 12-49 (52)
67 3kqi_A GRC5, PHD finger protei 76.3 0.5 1.7E-05 39.3 -0.1 33 642-674 21-56 (75)
68 4gut_A Lysine-specific histone 76.1 0.36 1.2E-05 56.7 -1.5 33 644-676 91-126 (776)
69 1ixm_A SPO0B, protein (sporula 75.6 1.3 4.3E-05 43.4 2.5 36 271-312 130-167 (192)
70 1wep_A PHF8; structural genomi 75.4 0.29 1E-05 41.1 -1.8 34 642-675 23-59 (79)
71 1wew_A DNA-binding family prot 68.5 1.2 3.9E-05 37.4 0.3 33 642-674 26-67 (78)
72 2k16_A Transcription initiatio 67.8 0.99 3.4E-05 37.2 -0.2 31 644-674 31-63 (75)
73 2rsd_A E3 SUMO-protein ligase 66.8 2.5 8.4E-05 34.4 1.9 32 643-674 21-60 (68)
74 2vpb_A Hpygo1, pygopus homolog 63.9 1.9 6.5E-05 35.1 0.7 19 640-658 18-37 (65)
75 1weu_A Inhibitor of growth fam 56.4 4.1 0.00014 35.4 1.6 32 644-675 47-81 (91)
76 1wen_A Inhibitor of growth fam 52.2 5.7 0.0002 32.8 1.7 31 644-675 27-61 (71)
77 2g6q_A Inhibitor of growth pro 44.7 5.6 0.00019 31.9 0.5 30 644-674 22-55 (62)
78 3c6w_A P28ING5, inhibitor of g 44.5 5.7 0.0002 31.5 0.5 30 644-674 20-53 (59)
79 1wem_A Death associated transc 44.3 4.9 0.00017 33.2 0.1 32 643-674 27-65 (76)
80 3kv5_D JMJC domain-containing 44.2 3.7 0.00013 45.8 -0.9 34 641-674 47-83 (488)
81 1ow1_A Smart/HDAC1 associated 44.1 12 0.0004 36.9 2.8 29 88-116 128-163 (195)
82 3pur_A Lysine-specific demethy 43.9 7.6 0.00026 43.6 1.6 34 641-674 53-89 (528)
83 2jmi_A Protein YNG1, ING1 homo 39.1 12 0.0004 32.5 1.7 30 644-674 37-70 (90)
84 2kvo_A Photosystem II reaction 36.3 8.5 0.00029 35.1 0.4 16 83-98 86-101 (120)
85 2vnf_A ING 4, P29ING4, inhibit 35.5 9.6 0.00033 30.2 0.5 30 644-674 21-54 (60)
86 2xb1_A Pygopus homolog 2, B-ce 31.8 12 0.00043 32.9 0.7 20 640-659 13-33 (105)
87 1x4i_A Inhibitor of growth pro 24.7 12 0.00042 30.6 -0.6 31 643-674 16-50 (70)
No 1
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.86 E-value=2.4e-22 Score=204.79 Aligned_cols=171 Identities=22% Similarity=0.297 Sum_probs=129.6
Q ss_pred ceeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCCEEEEE
Q 005748 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (679)
Q Consensus 234 ~~~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~At----------------~V~I~I~~~~~~~~~~~~~~L~I~ 296 (679)
...|.++ .+.|..++.+.|+....+|+|||+||.||.++ .+.|.|.. +.+...|+|.
T Consensus 18 ~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~ 91 (239)
T 3nmq_A 18 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLV 91 (239)
T ss_dssp EEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEE
Confidence 3446666 45777778888888888899999999999652 35666652 2246799999
Q ss_pred eCCCCCCHHHHHhhh-hcccCCC--------CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCC
Q 005748 297 DDGHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (679)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~S~k--------~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 367 (679)
|||.||++++|.+.+ ..+.|.+ ...+...||+||+||++++| +|++++|.||+.+. .++.|.+ .+.
T Consensus 92 DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~ 166 (239)
T 3nmq_A 92 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAG 166 (239)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CST
T ss_pred eCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCC
Confidence 999999999997765 3444321 12357899999999998866 99999999999764 4778877 344
Q ss_pred ccEEEcCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 368 DNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 368 ~~i~VPi~~--~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
..+.|.... -..+||+|+|+++++. ++.+++.++. |.+||.|..+||.
T Consensus 167 g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 167 GSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred CcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 567664432 2358999999999865 7888888875 8899999998885
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.86 E-value=3.1e-22 Score=207.94 Aligned_cols=170 Identities=24% Similarity=0.343 Sum_probs=128.5
Q ss_pred eeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEe
Q 005748 235 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 297 (679)
Q Consensus 235 ~~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~D 297 (679)
..|+++ .+.|..++.+.|+....+|+|||+||.||.+ ..+.|.|.. +.+...|+|.|
T Consensus 26 ~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~D 99 (281)
T 3peh_A 26 HQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITD 99 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEE
T ss_pred eeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEe
Confidence 345555 3456666777778888889999999999964 345666652 22457999999
Q ss_pred CCCCCCHHHHHhhh-hcccCCCC---------CCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCC
Q 005748 298 DGHGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (679)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~S~k~---------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 367 (679)
||.||++++|.++| .++.|.+. ..+...||+|||||+|++| +|++|+|.||+.+. .++.|.+. +.
T Consensus 100 NGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~--g~ 174 (281)
T 3peh_A 100 TGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWEST--AD 174 (281)
T ss_dssp CSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEE--TT
T ss_pred CCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEEC--CC
Confidence 99999999998866 35554321 2357899999999998866 99999999999875 57788763 44
Q ss_pred ccEEEcCc---ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 368 DNLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 368 ~~i~VPi~---~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
..+.|... .-..+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus 175 g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~ 227 (281)
T 3peh_A 175 AKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIY 227 (281)
T ss_dssp SCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEE
T ss_pred ccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceE
Confidence 56655432 23458999999999765 7888888875 8889999998886
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.85 E-value=3e-20 Score=209.53 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=129.7
Q ss_pred ceeeecCHH-HHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEE
Q 005748 234 KNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSII 296 (679)
Q Consensus 234 ~~~~~v~p~-~L~slst~~i~~~f~AIaELIDNS~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~ 296 (679)
+..|++.-+ .|+.++.+.|+.+..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.
T Consensus 6 ~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~ 79 (559)
T 1y4s_A 6 TRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTIS 79 (559)
T ss_dssp EEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEE
T ss_pred ceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEE
Confidence 345777764 5676777788889999999999999998 5555555542 1234799999
Q ss_pred eCCCCCCHHHHHhhh-hcccCCCC----------CCCCCcccccCceeeeeceeccceEEEEEeeCCC-CceeEEEEEec
Q 005748 297 DDGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLN 364 (679)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~S~k~----------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~-~s~~~ls~sf~ 364 (679)
|||+||+++++.+++ .+++|.+. ..+...||+||+||+|+++ +|++++|.||+.+. ...++.|.+
T Consensus 80 DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s-- 156 (559)
T 1y4s_A 80 DNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES-- 156 (559)
T ss_dssp ECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--
T ss_pred ECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--
Confidence 999999999998876 46766532 1256799999999988666 99999999999874 356888876
Q ss_pred CCCccEEEcCcccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 365 QGKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 365 ~g~~~i~VPi~~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
.+...+.|....-..+||.|+++++.+. +++..+.++. |.+||.|..+||.
T Consensus 157 ~g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 157 AGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp CSSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred eCCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3444555543333468999999998654 6777778765 8889999988765
No 4
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=6.3e-21 Score=195.26 Aligned_cols=169 Identities=25% Similarity=0.338 Sum_probs=122.5
Q ss_pred eeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCC------------------------------------------
Q 005748 235 NFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA------------------------------------------ 271 (679)
Q Consensus 235 ~~~~v~p-~~L~slst~~i~~~f~AIaELIDNS~DA~A------------------------------------------ 271 (679)
..|+..- +.|.-+..+.|+.....|+|||+||.||..
T Consensus 27 ~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (272)
T 3ied_A 27 YNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKK 106 (272)
T ss_dssp EECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------
T ss_pred echHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccccccccc
Confidence 3444444 344444556665555559999999999932
Q ss_pred ----------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhh-hcccCCC--------C-CCCCCcccccCc
Q 005748 272 ----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQP--------D-ADDPNRIGRFGV 331 (679)
Q Consensus 272 ----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~k--------~-~~d~~~IG~fGv 331 (679)
..+.|.|.. +.+...|+|.|||.||++++|.++| .++.|.. . ..+...|||||+
T Consensus 107 ~~~~e~~~~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGV 180 (272)
T 3ied_A 107 ENVEEEKNDIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGV 180 (272)
T ss_dssp -------CGGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCC
T ss_pred cccccccCCCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccc
Confidence 123455542 2346799999999999999999876 3444421 1 135789999999
Q ss_pred eeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcc--------cCCCCcEEEEEeccch-hhhhhhhhhh
Q 005748 332 GFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS 402 (679)
Q Consensus 332 GfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~--------~e~~Gt~I~l~~~~~~-e~~~e~~L~~ 402 (679)
||++|+| +|++|+|.|| .+ ..++.|.+ .+...+.|.... ...+||+|+|+++++. +++.++.++.
T Consensus 181 GFySaFm-VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~ 254 (272)
T 3ied_A 181 GFYSSFL-VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKE 254 (272)
T ss_dssp GGGGGGG-TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHH
T ss_pred eeheeec-cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHH
Confidence 9998766 9999999999 33 46788887 455677664332 3468999999999865 7888888876
Q ss_pred -hhhcCCCcchhHH
Q 005748 403 -IKEFSPFNKYLIG 415 (679)
Q Consensus 403 -I~kySpF~s~~I~ 415 (679)
|.+||.|..+||.
T Consensus 255 likkys~fi~~PI~ 268 (272)
T 3ied_A 255 LIKKYSEFIKFPIE 268 (272)
T ss_dssp HHHHHCTTCCSCEE
T ss_pred HHHHHHhCCCCCeE
Confidence 8899999998875
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.82 E-value=4.2e-21 Score=199.01 Aligned_cols=167 Identities=19% Similarity=0.320 Sum_probs=124.5
Q ss_pred eecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCC
Q 005748 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (679)
Q Consensus 237 ~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (679)
|+.. .++|+.++.+.|+....+|+|||+||+||++ ..+.|.|.. +.+...|+|.|||
T Consensus 10 Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnG 83 (269)
T 1qy5_A 10 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 83 (269)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECC
Confidence 4444 2455666776777788889999999999976 446666653 2346799999999
Q ss_pred CCCCHHHHHhhh-hcccCCCC-------------CCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecC
Q 005748 300 HGMTHQDVVRMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (679)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k~-------------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~ 365 (679)
+||++++|.++| .++.|... ..+...||+||+||++++| +|+++.|.||+.+. .++.|.+ .
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~ 158 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 158 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--C
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--e
Confidence 999999998766 46655210 0356789999999998866 99999999999875 4677766 3
Q ss_pred CCccEEEcCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 366 g~~~i~VPi~~---~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
+ ..+.|.... -..+||.|+|+++.+. +++.++.++. |.+||.|..+||.
T Consensus 159 g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 159 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred C-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 4 456554322 2357999999998754 6777777765 7889999998885
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.82 E-value=5.8e-21 Score=193.68 Aligned_cols=171 Identities=23% Similarity=0.303 Sum_probs=128.5
Q ss_pred ceeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCCEEEEE
Q 005748 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (679)
Q Consensus 234 ~~~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~At----------------~V~I~I~~~~~~~~~~~~~~L~I~ 296 (679)
...|+++ .+.|..++.+.|+.+..+|+|||+||+||+++ .+.|.|.. +.+...|.|.
T Consensus 11 ~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V~ 84 (228)
T 3t0h_A 11 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 84 (228)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred ceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEEE
Confidence 4556666 35677778888888999999999999999864 46666652 2356799999
Q ss_pred eCCCCCCHHHHHhhh-hcccCCCC--------CCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCC
Q 005748 297 DDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (679)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~S~k~--------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 367 (679)
|||.||+++++..++ .+++|.+. ..+...+|+||+||+|+++ +|++++|.||+.+. .++.|.+ .+.
T Consensus 85 DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~--~g~ 159 (228)
T 3t0h_A 85 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAG 159 (228)
T ss_dssp ECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CST
T ss_pred eCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEE--cCC
Confidence 999999999998765 45554321 1356799999999988865 99999999999863 5777876 344
Q ss_pred ccEEEcCc--ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 368 DNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 368 ~~i~VPi~--~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
..+.|... .-..+||.|+++++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 160 ~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 160 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred ceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 45555332 23357999999998765 6666677755 8899999988775
No 7
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.81 E-value=2e-19 Score=205.07 Aligned_cols=171 Identities=22% Similarity=0.299 Sum_probs=122.5
Q ss_pred eeecCH-HHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeC
Q 005748 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 298 (679)
Q Consensus 236 ~~~v~p-~~L~slst~~i~~~f~AIaELIDNS~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (679)
.|++.- +.|+.++.+.|+.+..+|+|||+||+||+ ++.+.|.|.. +.+...|+|.||
T Consensus 8 ~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~Dn 81 (624)
T 2ioq_A 8 GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDN 81 (624)
T ss_dssp -------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEEC
Confidence 355554 35666676677788889999999999998 6555666542 123579999999
Q ss_pred CCCCCHHHHHhhh-hcccCCCC----------CCCCCcccccCceeeeeceeccceEEEEEeeCCC-CceeEEEEEecCC
Q 005748 299 GHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQG 366 (679)
Q Consensus 299 G~GMt~eeL~~~l-~fG~S~k~----------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~-~s~~~ls~sf~~g 366 (679)
|+||+++++.+++ .+++|.+. ..+...||+||+||+|+++ +|++++|.||+.+. ...++.|.+. +
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~--g 158 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA--G 158 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEEC--S
T ss_pred CCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEEe--C
Confidence 9999999998875 46666531 1356799999999988766 99999999999873 3568888763 3
Q ss_pred CccEEEcCcccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 367 KDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 367 ~~~i~VPi~~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
...+.|....-..+||.|+++++.+. +++..+.++. |.+||.|..+||.
T Consensus 159 ~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 159 EGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SSCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 34454433233468999999998754 6777788865 8889999988765
No 8
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.81 E-value=1.7e-20 Score=191.10 Aligned_cols=169 Identities=19% Similarity=0.306 Sum_probs=120.6
Q ss_pred eeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEe
Q 005748 235 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 297 (679)
Q Consensus 235 ~~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~D 297 (679)
..|+++ ...++.++.+.|+.+..+|+|||+||+||+| ..+.|.|.. +.+...|.|.|
T Consensus 12 ~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~D 85 (236)
T 2gqp_A 12 FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTD 85 (236)
T ss_dssp ECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEE
T ss_pred cchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEE
Confidence 345555 3456666777778889999999999999987 335555542 12357899999
Q ss_pred CCCCCCHHHHHhhh-hcccCCCCC-------------CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEe
Q 005748 298 DGHGMTHQDVVRMT-YFGHKQPDA-------------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSL 363 (679)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~S~k~~-------------~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf 363 (679)
||+||++++|.+++ .+++|.+.. .+...||+||+||+++++ +|+++.|.||+.+. .++.|.+
T Consensus 86 nG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~- 161 (236)
T 2gqp_A 86 TGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES- 161 (236)
T ss_dssp CSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE-
T ss_pred CCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE-
Confidence 99999999998865 466663211 345689999999987655 99999999999875 3677765
Q ss_pred cCCCccEEEcCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 364 NQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 364 ~~g~~~i~VPi~~---~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
++ ..+.+.... -..+||.|+++++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 162 -~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 162 -DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp -SS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred -eC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 34 455553322 2357999999998754 5666677754 8899999998875
No 9
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.81 E-value=1.5e-20 Score=193.41 Aligned_cols=171 Identities=23% Similarity=0.297 Sum_probs=127.9
Q ss_pred ceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEecccccCCCCCCEEEEE
Q 005748 234 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (679)
Q Consensus 234 ~~~~~v~p-~~L~slst~~i~~~f~AIaELIDNS~DA~At----------------~V~I~I~~~~~~~~~~~~~~L~I~ 296 (679)
...|+.+- +++..++.+.|+....+|+|||+||+||+++ .+.|.|.. +.+...|+|.
T Consensus 39 ~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~ 112 (256)
T 3o0i_A 39 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 112 (256)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred eEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEe
Confidence 44566663 5566667777888888899999999999864 45666653 2356899999
Q ss_pred eCCCCCCHHHHHhhh-hcccCCCC--------CCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCC
Q 005748 297 DDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (679)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~S~k~--------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 367 (679)
|||.||++++|..++ ..+.|... ..+...+|+||+||+++++ ++++++|.||+.+. .++.|.+ .+.
T Consensus 113 DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s--~gg 187 (256)
T 3o0i_A 113 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAG 187 (256)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CST
T ss_pred cCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEE--ecc
Confidence 999999999998765 34443221 1356899999999998866 99999999999863 5788876 344
Q ss_pred ccEEEcCc--ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 368 DNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 368 ~~i~VPi~--~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
..+.|... .-..+||+|+++++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 188 ~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 188 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred ceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 45555432 22357999999998754 6777777765 8899999988775
No 10
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.80 E-value=5.4e-20 Score=190.34 Aligned_cols=164 Identities=23% Similarity=0.311 Sum_probs=124.6
Q ss_pred HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeCCCCCCH
Q 005748 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (679)
Q Consensus 241 p~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (679)
.+.+..++...++.+..+|+|||+||+||+| +.+.|.|.. ..+...|.|.|||.||++
T Consensus 55 ~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 55 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCH
Confidence 3566777777888899999999999999998 778888763 224678999999999999
Q ss_pred HHHHhhh-hcccCCCC--------CCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCc
Q 005748 305 QDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV 375 (679)
Q Consensus 305 eeL~~~l-~fG~S~k~--------~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~ 375 (679)
++|..++ .++.|.+. ..+...||+||+||+++++ ++++++|.||+.+. .++.|... +...+.+...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~ 203 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTD 203 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEEC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeec
Confidence 9998765 57776532 2356799999999998766 99999999999874 46777663 3334544322
Q ss_pred c--cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 376 S--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 376 ~--~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
. -...||.|+++++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 204 ~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 204 TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp CSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 2357999999998654 5566666654 8889999988775
No 11
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.80 E-value=6.7e-20 Score=184.39 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=124.0
Q ss_pred eeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEeC
Q 005748 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (679)
Q Consensus 236 ~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~DN 298 (679)
.|+++ .+.++.++.+.++....+|+|||+||+||+| ..+.|.+.. ..+...|.|.||
T Consensus 7 ~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~Dn 80 (220)
T 2wer_A 7 EFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDS 80 (220)
T ss_dssp ECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEc
Confidence 35555 3466666777778889999999999999987 455666653 123578999999
Q ss_pred CCCCCHHHHHhhh-hcccCCC--------CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCcc
Q 005748 299 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (679)
Q Consensus 299 G~GMt~eeL~~~l-~fG~S~k--------~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~ 369 (679)
|.||+++++.+++ .+++|.+ ...+...||+||+||+++ +.+++++.|.|++.+. .++.|... +...
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~~--~~~~~~~~--~~~~ 155 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDD--EQYIWESN--AGGS 155 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTS--CCEEEEEC--SSSE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCCC--ceeEEEeC--CCCc
Confidence 9999999998765 5776642 123567999999999766 5599999999999874 36777653 3335
Q ss_pred EEEcCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 370 LEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 370 i~VPi~~---~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
+.+.... -...||+|+++++.+. ++.+.+.+.. |.+|+.|..+||.
T Consensus 156 ~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 156 FTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp EEEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred eEeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 5543322 2357999999998654 5566666655 7889999988775
No 12
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.5e-19 Score=204.10 Aligned_cols=170 Identities=22% Similarity=0.290 Sum_probs=128.3
Q ss_pred eeeecC-HHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecccccCCCCCCEEEEEe
Q 005748 235 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 297 (679)
Q Consensus 235 ~~~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~A----------------t~V~I~I~~~~~~~~~~~~~~L~I~D 297 (679)
..|+.. .+.|+.++.+.|+....+|+|||+||+||++ ..+.|.|.. +.+...|+|.|
T Consensus 6 ~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~D 79 (677)
T 2cg9_A 6 FEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRD 79 (677)
T ss_dssp EECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEE
T ss_pred eehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEE
Confidence 346666 4566777777788888899999999999973 334555542 12347899999
Q ss_pred CCCCCCHHHHHhhh-hcccCCC--------CCCCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCc
Q 005748 298 DGHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (679)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~S~k--------~~~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~ 368 (679)
||+||+++++.+++ ..++|.+ ...+...||+||+||++|+| ++++|+|.||+.+. .++.|.+ .+..
T Consensus 80 nGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~ 154 (677)
T 2cg9_A 80 SGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGG 154 (677)
T ss_dssp CSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSS
T ss_pred CCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCc
Confidence 99999999998876 4555532 12356799999999988855 99999999999984 4788876 3445
Q ss_pred cEEEcCc---ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 369 NLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 369 ~i~VPi~---~~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
.+.|... .-..+||.|+|+++.+. +++.++.++. |.+||.|..+||.
T Consensus 155 ~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~ 206 (677)
T 2cg9_A 155 SFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (677)
T ss_dssp EEEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEE
T ss_pred eEEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeE
Confidence 5555431 23458999999998754 6777888865 8889999999886
No 13
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.77 E-value=2.8e-19 Score=181.84 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=122.2
Q ss_pred eecC-HHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeCC
Q 005748 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (679)
Q Consensus 237 ~~v~-p~~L~slst~~i~~~f~AIaELIDNS~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG 299 (679)
|.++ .+.+..++...++.+..||+|||+||+||+ ++.+.|.|.. ..+...|.|.|||
T Consensus 29 f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG 102 (235)
T 2ior_A 29 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 102 (235)
T ss_dssp CCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECC
Confidence 3444 335555666677788999999999999998 5556666652 1234679999999
Q ss_pred CCCCHHHHHhhh-hcccCCCC------C----CCCCcccccCceeeeeceeccceEEEEEeeCCCC-ceeEEEEEecCCC
Q 005748 300 HGMTHQDVVRMT-YFGHKQPD------A----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGK 367 (679)
Q Consensus 300 ~GMt~eeL~~~l-~fG~S~k~------~----~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~-s~~~ls~sf~~g~ 367 (679)
.||++++|..++ .+++|.+. . .+...+|+||+||+++ |.++++++|.|++.+.. ..++.|... +.
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~--~~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESA--GE 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEec--CC
Confidence 999999998765 67776531 0 1356899999999876 56999999999998752 467777763 33
Q ss_pred ccEEEcCcccCCCCcEEEEEeccch-hhhhhhhhh-hhhhcCCCcchhHH
Q 005748 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (679)
Q Consensus 368 ~~i~VPi~~~e~~Gt~I~l~~~~~~-e~~~e~~L~-~I~kySpF~s~~I~ 415 (679)
..+.+....-...||.|+++++.+. ++.+...+. .|.+|+.|..+||.
T Consensus 180 ~~~~i~~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 180 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp SEEEEEEECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred CcEEEeeCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 3444432223357999999998654 555566665 48889999887764
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.75 E-value=5.3e-19 Score=202.47 Aligned_cols=161 Identities=20% Similarity=0.325 Sum_probs=109.3
Q ss_pred HHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 005748 243 YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (679)
Q Consensus 243 ~L~slst~~i~~~f~AIaELIDNS~DA~----------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (679)
.|+.++.+.|+.+..+|+|||+||+||+ +..+.|.|.. +.+...|+|.|||+||++++
T Consensus 34 Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 34 MMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTREE 107 (666)
T ss_dssp CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECSCCCCHHH
T ss_pred HHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECCCCCCHHH
Confidence 4455566677778888999999999997 6556666653 12357899999999999999
Q ss_pred HHhhh-hcccCCCC--------C-----CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEE
Q 005748 307 VVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI 372 (679)
Q Consensus 307 L~~~l-~fG~S~k~--------~-----~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~V 372 (679)
+..++ .++.|.+. . .+...||+||+||+++++ +|++++|.||+.+. .++.|.+ ++ ..+.|
T Consensus 108 l~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~ti 181 (666)
T 2o1u_A 108 LVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFSV 181 (666)
T ss_dssp HHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCCEE
T ss_pred HHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--eC-CeEEE
Confidence 98876 35555221 1 356789999999998755 99999999999875 3777876 34 45555
Q ss_pred cCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005748 373 PIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (679)
Q Consensus 373 Pi~~---~e~~Gt~I~l~~~~~~-e~~~e~~L~~-I~kySpF~s~~I~ 415 (679)
.... -..+||+|+|+++.+. +++..+.++. |.+||.|..+||.
T Consensus 182 ~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 182 IADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp EECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred EecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 3322 2357999999998754 6777778765 8889999988764
No 15
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.61 E-value=1.7e-14 Score=153.49 Aligned_cols=111 Identities=19% Similarity=0.251 Sum_probs=87.1
Q ss_pred ceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhh-
Q 005748 234 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT- 311 (679)
Q Consensus 234 ~~~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l- 311 (679)
|....+++...+.+ +...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 44567899999988 445567999999999999999999999998873 234689999999999999999887
Q ss_pred hcccCCCCC----CCCCcccccCceeeeeceeccceEEEEEeeCCC
Q 005748 312 YFGHKQPDA----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (679)
Q Consensus 312 ~fG~S~k~~----~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~ 353 (679)
.|+++.... .....+|.+|+|+.+. ..++ +++|.||+.+.
T Consensus 76 ~~~tsK~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 76 RHATSKIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAEQ 119 (333)
T ss_dssp TTCCSSCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTTC
T ss_pred cccccCccccchhhhccccCccccchhhh-hcCC-cEEEEEecCCC
Confidence 465552211 0235789999999544 3366 79999999875
No 16
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.50 E-value=5.1e-13 Score=143.11 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=82.7
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcc
Q 005748 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (679)
Q Consensus 236 ~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (679)
...+++..++.+ +...+..+..++.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+++++..++...
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhccc
Confidence 457899999999 455668999999999999999999999999862 235679999999999999998877533
Q ss_pred cCCCCC--CC---CCcccccCceeeeeceeccceEEEEEeeCCC
Q 005748 315 HKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (679)
Q Consensus 315 ~S~k~~--~d---~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~ 353 (679)
++.|.. ++ ....|..|.|+.+. ..++ +++|.||+.+.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si-~avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASI-SHVA-HVTITTKTADG 123 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHH-HHSS-EEEEEEECTTC
T ss_pred cccccCcchhhhccccCCcCChHHHHh-hccc-EEEEEEEECCC
Confidence 333321 22 35679999999443 3466 79999999875
No 17
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.1e-12 Score=141.37 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=91.6
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-c
Q 005748 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (679)
Q Consensus 236 ~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (679)
...+++..++++ +...+..+..++.|||+||+||+|+.|.|.+. ..+...|+|.|||.||+++++..++. |
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 457888888888 45566899999999999999999999999885 23467899999999999999988765 3
Q ss_pred ccCCC-CCCC---CCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcccCCCCcEEEEE
Q 005748 314 GHKQP-DADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (679)
Q Consensus 314 G~S~k-~~~d---~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~e~~Gt~I~l~ 387 (679)
.++.. ..++ ....|..|.|+.+. ..++ +++|.||+.+ ..++.+.. . +...+..+.+.-...||+|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si-~avS-~l~V~sr~~~--~~~~~~~~-~-~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSL-CGIA-KLSVITTTSP--PKADKLEY-D-MVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHH-HHSS-EEEEEEESST--TCEEEEEE-C-TTCCEEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHHh-hccC-EEEEEEEECC--CCEEEEEE-c-CCCcEEeeccccCCCCeEEEEc
Confidence 33322 1122 34568889998543 4477 6999999987 34544433 2 1222322222334579999884
No 18
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.31 E-value=6.6e-13 Score=110.82 Aligned_cols=42 Identities=31% Similarity=0.605 Sum_probs=37.9
Q ss_pred cCCCCCCCceeccc--hhhhhhcCCCCCCCCCCCCcccccCCCC
Q 005748 637 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWYSHLYSV 678 (679)
Q Consensus 637 ~~~~~~~~~wvQCd--~C~KWR~lp~~~~~~~lp~~W~C~~n~~ 678 (679)
+....+...||||| +|+|||+||.++++..||++|+|+||++
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d 52 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTD 52 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCC
Confidence 44456788999999 9999999999999889999999999985
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.26 E-value=7.9e-12 Score=134.75 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=85.9
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-c
Q 005748 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (679)
Q Consensus 236 ~~~v~p~~L~sl-st~~i~~~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (679)
...+++..++++ +...+..+..||.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 456888888888 445667899999999999999999999998862 2356899999999999999998764 5
Q ss_pred ccCCCCC-CCC---CcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcCcccCCCCcEEEEE
Q 005748 314 GHKQPDA-DDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (679)
Q Consensus 314 G~S~k~~-~d~---~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~e~~Gt~I~l~ 387 (679)
.++.... .+. ...|.+|+|+.+. ..++ +++|.||+.+.. .++.+. |.. ...+..+.+.-...||+|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~si-~~vs-~v~v~t~~~~~~-~~~~~~-~~~-~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSSL-CALS-DVTISTCHASAK-VGTRLM-FDH-NGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHHH-HHHS-EEEEEEECTTCS-SCEEEE-ECT-TSCEEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhhh-hhhc-cEEEEEccCCCc-ceEEEE-EcC-CCceEeecccCCCCCcEEEEe
Confidence 4443221 222 3578899998544 3477 999999998753 344332 321 123332222233579999885
No 20
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.15 E-value=3.4e-12 Score=113.47 Aligned_cols=41 Identities=24% Similarity=0.607 Sum_probs=35.3
Q ss_pred CCCCCCCceeccchhhhhhcCCCCCC-CCCCCCcccccCCCC
Q 005748 638 ALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWYSHLYSV 678 (679)
Q Consensus 638 ~~~~~~~~wvQCd~C~KWR~lp~~~~-~~~lp~~W~C~~n~~ 678 (679)
..+.+..+|||||+|+|||+||.++. ...+|++|+|+||++
T Consensus 20 ~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D 61 (100)
T 2l7p_A 20 DSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSD 61 (100)
T ss_dssp SCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSC
T ss_pred CCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCC
Confidence 34667889999999999999998765 356899999999986
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.01 E-value=2.9e-09 Score=115.74 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=65.6
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------Hhhhh-cccCCCCC
Q 005748 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 320 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~ 320 (679)
-+...+.||||||+|| | |+.|.|.|.. ...|+|.|||.||+.++. .-+|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 5788899999999999 5 9999998862 238999999999999873 33443 33333321
Q ss_pred C--CCCcccccCceeeeeceeccceEEEEEeeCC
Q 005748 321 D--DPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (679)
Q Consensus 321 ~--d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~ 352 (679)
. -..+-|..|+|+. +.-.++..+.|.|++.+
T Consensus 105 ~~~~~vSgGl~GvGls-~vnalS~~l~v~~~r~g 137 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVS-VVNALSQKLELVIQREG 137 (391)
T ss_dssp SSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEETT
T ss_pred CCcccccCCccccchH-HHHHhcCeEEEEEEeCC
Confidence 1 2347799999994 44458889999998765
No 22
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.89 E-value=2.2e-08 Score=108.12 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCC--Ccc
Q 005748 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP--NRI 326 (679)
Q Consensus 253 ~~~f~AIaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~--~~I 326 (679)
.-+..++.||||||+|| +|++|.|.|.. + ..|+|.|||.||+. |+.-.+--| .|-.... ...
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lhag--sKf~~~~~~~~y 96 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVATG--AGFLGRPPGDGW 96 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHHTT--TTGGGSSCCCST
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeeecC--CCcCCCcccccc
Confidence 35778899999999998 79999999862 1 38999999999999 432222122 2211100 122
Q ss_pred cccCceeeeeceeccceEEEEEeeCCC
Q 005748 327 GRFGVGFKTGAMRLGKDALVLTQTADS 353 (679)
Q Consensus 327 G~fGvGfKsAs~~Lg~~v~V~Sk~~~~ 353 (679)
+.-| |. ++.-.++..++|.|++.+.
T Consensus 97 ~vsG-Gl-s~vnalSs~l~v~t~r~g~ 121 (369)
T 3cwv_A 97 GWDS-ML-VVSLALSSRYQVDIWADGR 121 (369)
T ss_dssp TTTS-SH-HHHHHTEEEEEEEEEETTE
T ss_pred cccC-HH-HHHHHhhceEEEEEEECCC
Confidence 2225 76 3344578899999998663
No 23
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.85 E-value=4.2e-09 Score=104.72 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------Hhhhh-cccCCCCCC
Q 005748 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 321 (679)
Q Consensus 255 ~f~AIaELIDNS~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~~ 321 (679)
+..++.|||+||+|| | |+.|.|.+.. ...|+|.|||.||+.+++ ..++. ...+.|...
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 467799999999999 5 9999998852 238999999999999884 22232 222222211
Q ss_pred C--CCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEEcC-ccc--CCCCcEEEEEeccchhhhh
Q 005748 322 D--PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTVVQSEATA 396 (679)
Q Consensus 322 d--~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~--e~~Gt~I~l~~~~~~e~~~ 396 (679)
+ ....|..|+|+.+ .-.++..+.|.|++.+. .+.+.|..|...-.++. ..- ...||+|++.+...
T Consensus 89 ~~~~~s~GfrGeglss-inalS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pdr~----- 158 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISV-VNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET----- 158 (201)
T ss_dssp -------------CHH-HHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGG-----
T ss_pred CcccccCcccceecch-hhcccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEECHH-----
Confidence 1 3468999999954 44488899999998764 24566654432112221 122 35799998864321
Q ss_pred hhhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEecc
Q 005748 397 KYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 436 (679)
Q Consensus 397 e~~L~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nLr 436 (679)
+.+-..|....|.+.+..+.--..|..|.+.+-+
T Consensus 159 ------~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 159 ------FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp ------GSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred ------HcCCCccCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 0111122222233333333222568888887664
No 24
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.83 E-value=4e-08 Score=106.79 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhcccccC----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--------hhh-cccCCCCC
Q 005748 254 WIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA 320 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~~ 320 (679)
-....|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.+ ++. |....+..
T Consensus 32 g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~ 102 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGG
T ss_pred hHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccccc
Confidence 35678999999999995 8888888752 23899999999999998755 443 22221111
Q ss_pred --CCCCcccccCceeeeeceeccceEEEEEeeCC
Q 005748 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (679)
Q Consensus 321 --~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~ 352 (679)
......|..|+|++ ..-.++..+.|.|++.+
T Consensus 103 ~~~~~~s~G~~G~Gls-~v~als~~~~v~t~~~g 135 (390)
T 1kij_A 103 QGAYKVSGGLHGVGAS-VVNALSEWTVVEVFREG 135 (390)
T ss_dssp GSSCCCCSCSSTTSHH-HHHHTEEEEEEEEEETT
T ss_pred CccccccCCCCCccee-eecccccceEEEEecCC
Confidence 11235689999994 44558889999999765
No 25
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.81 E-value=2.2e-07 Score=101.05 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=76.9
Q ss_pred HHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHhhhh-cccCCCCCC-
Q 005748 256 FGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDAD- 321 (679)
Q Consensus 256 f~AIaELIDNS~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~~~- 321 (679)
..++.|||+||+|| | |+.|.|.|.. ...|+|.|||.||+.++ +..+|. +..+.|-..
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec---------CCEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 56799999999999 4 9999999862 13899999999999888 444443 322223211
Q ss_pred -CCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCccEEE-cCcccC--CCCcEEEEEe
Q 005748 322 -DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI-PIVSYY--RKGQFMELDT 388 (679)
Q Consensus 322 -d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~V-Pi~~~e--~~Gt~I~l~~ 388 (679)
-....|..|+|+. +.-.++..+.|.|++.+. .+.+.|..|...-.+ ++.... ..||.|++.+
T Consensus 104 ~~~~sgGl~GvGls-~vnalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 169 (390)
T 1s16_A 104 NYQFSGGLHGVGIS-VVNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 169 (390)
T ss_dssp SCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred cccccCCccccchH-HHHHhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEE
Confidence 2346789999994 444588899999997652 344556444211101 112222 4577776653
No 26
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.65 E-value=4.7e-08 Score=106.55 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHhhhh-cccCCCC
Q 005748 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD 319 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~ 319 (679)
-+...+.||||||+||+ ++.|.|.|.. +...|+|.|||.||+.++ +.-+|. ...+.|-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~--------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP--------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC--------CCCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 45677999999999997 8899998872 126999999999999886 333443 2222222
Q ss_pred CC--CCCcccccCceeeeeceeccceEEEEEeeC
Q 005748 320 AD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTA 351 (679)
Q Consensus 320 ~~--d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~ 351 (679)
.. -..+.|..|+|.+ +.-.|+..+.|.++..
T Consensus 124 ~~~~ykvSgGlhGvGls-vVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGAK-LCNIFSTKFTVETASR 156 (400)
T ss_dssp CGGGCCCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred CCCcccccCCcccccee-eeEEeccceEEEEecC
Confidence 11 1347899999994 4445889999999874
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.57 E-value=8.5e-08 Score=96.70 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=91.4
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------Hhhhh-cccCCCCC
Q 005748 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 320 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~ 320 (679)
-+..++.|||+||+|+ .|+.|.|.|.. ...|+|.|||.||+.+.. .-+|. +..+.|-.
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 4778899999999999 89999999862 247999999999999863 22232 22222221
Q ss_pred --CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCc--cE-EEcCcccCCCCcEEEEEeccchhhh
Q 005748 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEAT 395 (679)
Q Consensus 321 --~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i-~VPi~~~e~~Gt~I~l~~~~~~e~~ 395 (679)
.-...-|..|+|.+ +.-.|+..+.|.+++.+. .+.+.|..|.. .+ .++ .-...||+|++.+..+- +.
T Consensus 106 ~~~yk~SgGlhGvG~s-vvNAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~~g--~~~~~GT~V~F~Pd~~~-F~ 177 (220)
T 4duh_A 106 DNSYKVSGGLHGVGVS-VVNALSQKLELVIQREGK----IHRQIYEHGVPQAPLAVTG--ETEKTGTMVRFWPSLET-FT 177 (220)
T ss_dssp TTC--------CCCHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEESSSCEEEE--ECSCCEEEEEEEECTTT-CC
T ss_pred CCccccccCccceecc-hhcccccceEEEEEECCE----EEEEEecCCcCcCCceecc--ccCCCCcEEEEEECHHH-hC
Confidence 12467899999994 444588899999998774 24566654421 11 122 22457999987653221 10
Q ss_pred hhhhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005748 396 AKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (679)
Q Consensus 396 ~e~~L~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nLrr 437 (679)
+...|....|.+.+..+.--..|.+|.+.+-+.
T Consensus 178 ---------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 178 ---------NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp ---------SSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred ---------CcccCCHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 001222222333333222225788998887653
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.54 E-value=1.7e-07 Score=94.94 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=100.4
Q ss_pred ceeeecCHHHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH---
Q 005748 234 KNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--- 306 (679)
Q Consensus 234 ~~~~~v~p~~L~slst~~i~~~f~AIaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--- 306 (679)
..+++..|...- ++....-+...+.|||+||+|+ .++.|.|.+.. ...++|.|||.||+.+.
T Consensus 22 le~vr~RPgmYi--Gs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h~~ 90 (226)
T 4emv_A 22 LDAVRKRPGMYI--GSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMHAM 90 (226)
T ss_dssp THHHHHCHHHHH--SCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCGG
T ss_pred hHHHhhCCceEE--cCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCcccccccc
Confidence 455555555332 2211234667899999999999 88999988752 24799999999999987
Q ss_pred ----HHhhhh-cccCCCCC--CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCC-Cc--cEE-EcCc
Q 005748 307 ----VVRMTY-FGHKQPDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE-IPIV 375 (679)
Q Consensus 307 ----L~~~l~-fG~S~k~~--~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g-~~--~i~-VPi~ 375 (679)
+.-+|. +..+.|.. .-..+-|..|+|.+ +.-.|+..+.|.+++.+. .+.+.|..| .. .+. +...
T Consensus 91 ~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig~~ 165 (226)
T 4emv_A 91 GIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS-VVNALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIGTA 165 (226)
T ss_dssp GCBHHHHHHHCBC--------------CGGGCCHH-HHHHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEEEC
T ss_pred CceehheeEEeecccCccCccceEeccccccccch-hhhhcccceEEEEEeCCc----EEEEEECCCCEEcCCceEeccc
Confidence 444443 22222321 12467899999994 444588999999998774 345666544 21 111 1111
Q ss_pred ccCCCCcEEEEEeccchhhhhhhhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005748 376 SYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (679)
Q Consensus 376 ~~e~~Gt~I~l~~~~~~e~~~e~~L~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nLrr 437 (679)
.-...||+|++.+..+- + +-.-|....|...+..+.--..|.+|.+.+-+.
T Consensus 166 ~~~~~GT~V~F~PD~~i-F----------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 166 LKSKTGTKVTFMPDATI-F----------STTDFKYNTISERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp CTTCCEEEEEEEECTTT-C----------SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTT
T ss_pred CCCCCCeEEEEEECHHH-c----------CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 11457999987654321 1 111222222333333222225788998887653
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.37 E-value=7.2e-07 Score=99.15 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCccc
Q 005748 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (679)
.+..+|.|||+||+||++. .|.|.+... + ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~-~--~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLI-D--DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE-E--TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC-C--CcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 677777631 0 012355799999999999999998875 4343332 1235668
Q ss_pred ccCceeeeece---eccce-EEEEEeeCCC
Q 005748 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (679)
Q Consensus 328 ~fGvGfKsAs~---~Lg~~-v~V~Sk~~~~ 353 (679)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999964432 23444 9999987764
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.31 E-value=9.5e-07 Score=99.52 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=68.6
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCccc
Q 005748 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (679)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4678899999999999887 7888876410 012355799999999999999998875 4344332 1235678
Q ss_pred ccCceeeeece---eccce-EEEEEeeCCC
Q 005748 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (679)
Q Consensus 328 ~fGvGfKsAs~---~Lg~~-v~V~Sk~~~~ 353 (679)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999964432 23444 9999987664
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.25 E-value=8.3e-07 Score=96.91 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=69.6
Q ss_pred HHHHHHHHhccccc----CCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH--------Hhhhh-cccCCCCC--
Q 005748 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA-- 320 (679)
Q Consensus 256 f~AIaELIDNS~DA----~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~S~k~~-- 320 (679)
...+.|+||||+|+ .++.|.|.|.. ...|+|.|||.||+.+.. .-+|. +..+.|..
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 45699999999999 89999998852 248999999999998763 22232 21122211
Q ss_pred CCCCcccccCceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCc--cEE-EcCcccCCCCcEEEEEec
Q 005748 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 321 ~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~-VPi~~~e~~Gt~I~l~~~ 389 (679)
.-..+-|..|+|.+ +.-.|+..+.|.+++++. .+.+.|..|.. .+. +....-...||+|+..+.
T Consensus 123 ~ykvSgGlhGvG~s-vVNALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGVS-VVNALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEEC
T ss_pred ceeecCCccccccc-eehhccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEEC
Confidence 12457799999994 444589999999998774 35566654421 111 111111357999987653
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.11 E-value=2.1e-06 Score=98.32 Aligned_cols=131 Identities=16% Similarity=0.254 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhh-cccCCCCCCCCCccc
Q 005748 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~k~~~d~~~IG 327 (679)
.+..+|.|||+||+||+++ .|.|.+... +.+...|+|.|||.||+.+++.+++. |..+.+........|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4678899999999999875 677766531 11335799999999999999999874 323322211224458
Q ss_pred ccCceeeeece---eccce-EEEEEeeCCCCceeEEEEEe--cCCCccE--EEcCcccCCCCcEEEEEec
Q 005748 328 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 389 (679)
Q Consensus 328 ~fGvGfKsAs~---~Lg~~-v~V~Sk~~~~~s~~~ls~sf--~~g~~~i--~VPi~~~e~~Gt~I~l~~~ 389 (679)
..|+|+..+.. .++.. +.|.|+..+......+...+ ..+.... .-+.+.-...||.|++.++
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 89999964422 12333 68999877632222222222 1222111 1111112347999988753
No 33
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.91 E-value=2.1e-05 Score=77.98 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCccccc
Q 005748 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA---~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~f 329 (679)
-+...+.|||+||+|+ | |+.|.|.+.. ...++|.|||.||+.+.-. .+... ....+ |
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~------~~~~~--~~e~i--~ 91 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE------KMGRP--AVEVI--L 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT------TTSSB--HHHHH--H
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC------cCCCc--ccccc--c
Confidence 4677899999999994 7 8999999873 2389999999999986210 00000 00111 2
Q ss_pred CceeeeeceeccceEEEEEeeCCCCceeEEEEEecCCCc--cE-EEcCcccCCCCcEEEEEeccchhhhhhhhhhhhhhc
Q 005748 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF 406 (679)
Q Consensus 330 GvGfKsAs~~Lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i-~VPi~~~e~~Gt~I~l~~~~~~e~~~e~~L~~I~ky 406 (679)
+ . ++.=.|+..+.|.+++++. .+.+.|..|.- .. .++ .-...||+|++.+..+- + ++-
T Consensus 92 t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~i-F---------~~~ 152 (198)
T 3ttz_A 92 T--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGEI-F---------TET 152 (198)
T ss_dssp H--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTTT-C---------CSC
T ss_pred e--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHHH-h---------ccC
Confidence 2 1 2222467899999988774 34566654421 11 122 22467999987643221 1 011
Q ss_pred CCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005748 407 SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (679)
Q Consensus 407 SpF~s~~I~e~~~~~~~~~~GT~IiI~nLrr 437 (679)
.-|....|.+.+..+.--..|.+|.+.+-+.
T Consensus 153 ~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 153 TVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred CccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 1222222333333322225799999987753
No 34
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.91 E-value=1.7e-05 Score=86.90 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHh--------hhh-cccCCCCC
Q 005748 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA 320 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S~k~~ 320 (679)
+.-.+.|+||||+|+. ++.|.|.|.. +...|+|.|||.||+.+.... .|. +..+.|..
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 4556999999999975 6899998873 225899999999998765322 232 11122211
Q ss_pred --CCCCcccccCceeeeeceeccceEEEEEee--CCCCceeEEEEEecCCCccEEEc-Cccc--CCCCcEEEEEecc
Q 005748 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQT--ADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTVV 390 (679)
Q Consensus 321 --~d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk~--~~~~s~~~ls~sf~~g~~~i~VP-i~~~--e~~Gt~I~l~~~~ 390 (679)
.-..+-|..|+|. ++.=.|+..+.|.+++ ++. .+.++|..|.....-| +... ...||+|+..+..
T Consensus 137 ~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~ 208 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDL 208 (418)
T ss_dssp TTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECG
T ss_pred CCceeccCCccceee-eeeeeccceEEEEEEECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEECh
Confidence 1235679999999 5555688999999986 332 3556775442111111 1111 3479999876543
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.70 E-value=5.6e-05 Score=68.65 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..++.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-..+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 55679999999999987777777653 3345679999999999999998887543332211 135688875
Q ss_pred eec---eeccceEEEEEee
Q 005748 335 TGA---MRLGKDALVLTQT 350 (679)
Q Consensus 335 sAs---~~Lg~~v~V~Sk~ 350 (679)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 332 2356777776643
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.57 E-value=0.0001 Score=67.91 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+.. ...+..|+|+.
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 45679999999999988888888764 2345678999999999999998887533332211 11245788885
Q ss_pred eec---eeccceEEEEEeeC
Q 005748 335 TGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 335 sAs---~~Lg~~v~V~Sk~~ 351 (679)
.+- -.+|.++.+.+...
T Consensus 119 i~~~~~~~~gG~i~~~~~~~ 138 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSER 138 (161)
T ss_dssp TTHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 432 13577777777543
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.38 E-value=0.00016 Score=71.73 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCccccc
Q 005748 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At-----~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~f 329 (679)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 456789999999998542 35655542 2235678999999999999998887633322211 11122346
Q ss_pred Cceeeeec---eeccceEEEEEeeC
Q 005748 330 GVGFKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 330 GvGfKsAs---~~Lg~~v~V~Sk~~ 351 (679)
|+|+..+- -..|.++.|.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 88875321 13577787777643
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.33 E-value=0.00027 Score=64.20 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At-~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-.++... ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 456799999999998643 55555543 234567899999999999999988753332111 1123468887
Q ss_pred eeec---eeccceEEEEEee
Q 005748 334 KTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 334 KsAs---~~Lg~~v~V~Sk~ 350 (679)
..+- -.+|.++.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5332 2356677776653
No 39
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.27 E-value=7.9e-05 Score=70.72 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH
Q 005748 255 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~--------------At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (679)
+..+|.+||+||+.++ ...|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4456999999999985 3456666653 234567899999999999987
No 40
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.27 E-value=0.00023 Score=76.67 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCC----
Q 005748 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (679)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 44568999999999843 268887763 33456789999999999999999987544433210
Q ss_pred -CCCcccccCceeeeec---eeccceEEEEEeeC
Q 005748 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 322 -d~~~IG~fGvGfKsAs---~~Lg~~v~V~Sk~~ 351 (679)
.....+-+|+|+..+- -..|.++.|.|...
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 1234567899985332 23577777777543
No 41
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.27 E-value=0.00035 Score=69.25 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 55679999999999865 466666653 334567899999999999999888754333221 346888
Q ss_pred eeeec---eeccceEEEEEee
Q 005748 333 FKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 333 fKsAs---~~Lg~~v~V~Sk~ 350 (679)
+..+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75332 2457777776654
No 42
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.19 E-value=0.00035 Score=63.63 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccc
Q 005748 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~A-----t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~ 328 (679)
.+..++.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-.++.+. ..+.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~ 105 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCC
Confidence 356789999999998863 566666653 23456789999999999 66666543332221 1234
Q ss_pred cCceeeeeceeccceEEEEEee
Q 005748 329 FGVGFKTGAMRLGKDALVLTQT 350 (679)
Q Consensus 329 fGvGfKsAs~~Lg~~v~V~Sk~ 350 (679)
.|+|+..+. ++.+.+.+.+..
T Consensus 106 ~GlGL~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 106 SGMGFTIME-NFMDEVIVESEV 126 (145)
T ss_dssp CSCHHHHHH-HHSSEEEEEEET
T ss_pred CcchHHHHH-HHHheEEEEeCC
Confidence 588885332 344566665543
No 43
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.17 E-value=0.00044 Score=67.15 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+ ..+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcchh
Confidence 5567999999999986 3566666653 23456789999999999999988876444322 12346888
Q ss_pred eeeec---eeccceEEEEEeeC
Q 005748 333 FKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 333 fKsAs---~~Lg~~v~V~Sk~~ 351 (679)
+..+- -.+|..+.+.+...
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75432 23577777777543
No 44
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.12 E-value=0.00029 Score=75.42 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCC----
Q 005748 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (679)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45568999999999842 258887763 33456789999999999999999987544433210
Q ss_pred CCCcccccCceeeeec---eeccceEEEEEeeC
Q 005748 322 DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 322 d~~~IG~fGvGfKsAs---~~Lg~~v~V~Sk~~ 351 (679)
.....+-+|+|+..+- -..|.++.|.|...
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 1233456889985332 24577888877543
No 45
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.12 E-value=0.00032 Score=63.34 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+ -+..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~-------~~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK-------TQGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC-------CCCCCcC
Confidence 5567899999999985 4566666653 23456789999999999999988875433322 1246888
Q ss_pred eeeec--e--eccceEEEEEe
Q 005748 333 FKTGA--M--RLGKDALVLTQ 349 (679)
Q Consensus 333 fKsAs--~--~Lg~~v~V~Sk 349 (679)
+..+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86431 2 35777777664
No 46
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.12 E-value=0.00032 Score=75.27 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCC----
Q 005748 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A---------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~---- 321 (679)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 44568999999999843 258887764 33456789999999999999999987544433210
Q ss_pred -CCCcccccCceeeeec---eeccceEEEEEeeC
Q 005748 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 322 -d~~~IG~fGvGfKsAs---~~Lg~~v~V~Sk~~ 351 (679)
.....+-+|+|+..+- -..|.++.|.|...
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSG 338 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCC
Confidence 1234466889985332 23577787777543
No 47
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.08 E-value=0.00033 Score=66.99 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCceee
Q 005748 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGfK 334 (679)
+..+|.+||+||+.+....-.|.+... ...|.|.|||.||+++++.+.+...++.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 456799999999999765544555431 123999999999999999888763333221 12234688875
Q ss_pred eec---eeccceEEEEEee
Q 005748 335 TGA---MRLGKDALVLTQT 350 (679)
Q Consensus 335 sAs---~~Lg~~v~V~Sk~ 350 (679)
.+- -..|.++.|.|..
T Consensus 186 i~~~i~~~~gG~i~i~s~~ 204 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAE 204 (222)
T ss_dssp HHHHHHHHTTCEEECCBCT
T ss_pred HHHHHHHHcCCEEEEEcCC
Confidence 332 1345555555543
No 48
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.07 E-value=0.00033 Score=75.91 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCC----
Q 005748 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 320 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A----------t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~---- 320 (679)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 44568999999999843 268887763 3345678999999999999999998744433221
Q ss_pred -CCCCcccccCceeeeec---eeccceEEEEEee
Q 005748 321 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 321 -~d~~~IG~fGvGfKsAs---~~Lg~~v~V~Sk~ 350 (679)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456899985332 2357777777754
No 49
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.05 E-value=0.00039 Score=65.21 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..+|.+||+||+++.. ..+.|.+... ...+.-.|.|.|||.||+.+++.+++...++.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 45569999999999863 4556665321 12345678999999999999988887533322211 12223457888
Q ss_pred eeeec---eeccceEEEEEeeC
Q 005748 333 FKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 333 fKsAs---~~Lg~~v~V~Sk~~ 351 (679)
++.+- -.+|.++.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 76432 23567777766543
No 50
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.03 E-value=0.00024 Score=75.92 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcccccCCC----------ccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCC---
Q 005748 255 IFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 321 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~At----------~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~--- 321 (679)
+..+|.+||+||+.|... .|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 556799999999998421 68887763 33456789999999999999999887444333210
Q ss_pred ----------------CCCcccccCceeeeec---eeccceEEEEEeeC
Q 005748 322 ----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 322 ----------------d~~~IG~fGvGfKsAs---~~Lg~~v~V~Sk~~ 351 (679)
.....+-.|+|+..+- -..|.++.|.|...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 1123456888885432 24578888887643
No 51
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.95 E-value=0.0007 Score=72.61 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcccccC------------C--CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHH-------------
Q 005748 255 IFGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV------------- 307 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~------------A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL------------- 307 (679)
+..++.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 3455899999999997 2 345655543 234567899999999999987
Q ss_pred -----------HhhhhcccCCCCCCCCCcccccCceeeee---ceeccceEEEEEeeC
Q 005748 308 -----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (679)
Q Consensus 308 -----------~~~l~fG~S~k~~~d~~~IG~fGvGfKsA---s~~Lg~~v~V~Sk~~ 351 (679)
...|..|++.+. .....+-.|+|+.-+ .-.+|..+.|.|...
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 334444444432 122345568888422 224678888888654
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.86 E-value=0.00023 Score=64.74 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeccccc----CCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCccc
Q 005748 255 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~---At~V~I~I~~~~~~~----~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG 327 (679)
+..++.+||+||+.+. ...|.|.+....+.. .....-.|.|.|||.||+.+++.+.+...++.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5566899999999975 456676665311000 0000356899999999999999888753333221 3
Q ss_pred ccCceeeeec---eeccceEEEEEee
Q 005748 328 RFGVGFKTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 328 ~fGvGfKsAs---~~Lg~~v~V~Sk~ 350 (679)
..|+|+..+- -.+|.++.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688875332 2457777777754
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.57 E-value=0.0012 Score=63.39 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
+..++.||++||+.++ +..|.|.+.. ..+.-.|.|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 4567999999999874 5677777763 234567899999999999875 1247787
Q ss_pred eeec---eeccceEEEEEee
Q 005748 334 KTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 334 KsAs---~~Lg~~v~V~Sk~ 350 (679)
..+- -.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 1356777776654
No 54
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.49 E-value=0.0016 Score=66.60 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 255 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~--At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
+..++.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5677999999999986 4677777653 234567899999999999999888764443321 235788
Q ss_pred eeeec--e--eccceEEEEEe
Q 005748 333 FKTGA--M--RLGKDALVLTQ 349 (679)
Q Consensus 333 fKsAs--~--~Lg~~v~V~Sk 349 (679)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75321 1 35666666554
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.26 E-value=0.0036 Score=55.16 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCce
Q 005748 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvG 332 (679)
.+..++.|||+||+.+. +..|.|.+.. ..+ -.|.|.|||.||+++. .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 46678999999999986 6778887764 234 6789999999998754 3788
Q ss_pred eeeec---eeccceEEEEEeeC
Q 005748 333 FKTGA---MRLGKDALVLTQTA 351 (679)
Q Consensus 333 fKsAs---~~Lg~~v~V~Sk~~ 351 (679)
+..+. -.+|.++.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75322 13566666666544
No 56
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.011 Score=72.28 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=53.4
Q ss_pred HHHHHHHhccccc---C-C-CccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH--------HHhhhh-cccCCCCCC-
Q 005748 257 GAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDAD- 321 (679)
Q Consensus 257 ~AIaELIDNS~DA---~-A-t~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S~k~~~- 321 (679)
-.+.|.||||+|. | + +.|+|.|+. +...|+|.|||-||+-+. +.-+|+ +..+.+...
T Consensus 62 hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~ 133 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD 133 (1177)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS
T ss_pred eEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC
Confidence 3489999999993 4 2 678888862 246899999999998542 111232 111222111
Q ss_pred -CCCcccccCceeeeeceeccceEEEEEe
Q 005748 322 -DPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (679)
Q Consensus 322 -d~~~IG~fGvGfKsAs~~Lg~~v~V~Sk 349 (679)
-..+-|..|+|. +..=.|...+.|.+.
T Consensus 134 ~ykvSGGLHGVG~-svVNALS~~~~vev~ 161 (1177)
T 4gfh_A 134 EKKVTGGRNGYGA-KLCNIFSTEFILETA 161 (1177)
T ss_dssp SCCCCSCCSSCHH-HHHHHTEEEEEEEEE
T ss_pred CCeEeccCCChhh-hHHhhcCCceEEEEE
Confidence 134669999998 444447777777664
No 57
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.21 E-value=0.0023 Score=57.04 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHHHHhhhhcccCCCCCCCCCcccccCcee
Q 005748 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IG~fGvGf 333 (679)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 5567999999999874 5678887764 234567899999999987654 2247887
Q ss_pred eeec---eeccceEEEEEee
Q 005748 334 KTGA---MRLGKDALVLTQT 350 (679)
Q Consensus 334 KsAs---~~Lg~~v~V~Sk~ 350 (679)
..+. -.+|.++.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 4321 1346666666644
No 58
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.71 E-value=0.0068 Score=53.12 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHHH
Q 005748 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~-At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (679)
.+..++.||++||+.+. +..|.|.+.. ..+ -.|.|.|||.||+++.
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 35678999999999975 4577777763 223 6789999999998876
No 59
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=92.20 E-value=0.094 Score=52.23 Aligned_cols=82 Identities=9% Similarity=-0.082 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEecccccCCCCCCEEEEEeCCCC--CCHHHHHhhhhcccCCCCCCCCCcccccC
Q 005748 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (679)
Q Consensus 255 ~f~AIaELIDNS~DA~A--t~V~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~eeL~~~l~fG~S~k~~~d~~~IG~fG 330 (679)
...++..|++||++|.. ..|.|.+.. ..+.-.|.|.|+|.| |+++.+...+.-..+. . .+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~-~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE------G-LGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------S-CHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------C-CCCcc
Confidence 44678899999999954 356766653 235667899999987 6666555554311111 1 22348
Q ss_pred ceeeee---ceeccceEEEEEe
Q 005748 331 VGFKTG---AMRLGKDALVLTQ 349 (679)
Q Consensus 331 vGfKsA---s~~Lg~~v~V~Sk 349 (679)
+|+..+ .-..|..+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887432 1235777777764
No 60
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=91.04 E-value=0.089 Score=43.38 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=25.4
Q ss_pred CCceeccchhhhhhcCCC-CCCCCCCCCccccc
Q 005748 643 DQEWVQCNKCRKWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 643 ~~~wvQCd~C~KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
...+||||.|..|-.+.= ++....+|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 457999999999988763 44445789999995
No 61
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=90.06 E-value=0.088 Score=40.90 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=25.6
Q ss_pred CCceeccchhhhhhcCCC-CCCCCCCCCccccc
Q 005748 643 DQEWVQCNKCRKWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 643 ~~~wvQCd~C~KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
...+||||.|..|-++.= ++....+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 458999999999988873 45545678999995
No 62
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.67 E-value=0.17 Score=40.69 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCCceeccchhhhhhcCCC-CCCCC--CCCCccccc
Q 005748 642 PDQEWVQCNKCRKWRMLDP-GFDTK--SLPVEWYSH 674 (679)
Q Consensus 642 ~~~~wvQCd~C~KWR~lp~-~~~~~--~lp~~W~C~ 674 (679)
+...|||||.|..|-+..= ++... ..++.|+|.
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 53 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCP 53 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECC
Confidence 4578999999999977652 33322 246899995
No 63
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.45 E-value=0.19 Score=44.23 Aligned_cols=33 Identities=27% Similarity=0.706 Sum_probs=26.1
Q ss_pred CCceeccchhhhhhcCC-CCCCCCCCCCcccccC
Q 005748 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWYSHL 675 (679)
Q Consensus 643 ~~~wvQCd~C~KWR~lp-~~~~~~~lp~~W~C~~ 675 (679)
...+||||.|.+|-.+. .++....+|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3444467899999964
No 64
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.07 E-value=0.21 Score=41.31 Aligned_cols=31 Identities=19% Similarity=0.649 Sum_probs=23.4
Q ss_pred CceeccchhhhhhcCCC-CCC-CCCCCCccccc
Q 005748 644 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWYSH 674 (679)
Q Consensus 644 ~~wvQCd~C~KWR~lp~-~~~-~~~lp~~W~C~ 674 (679)
..|||||.|..|-++.= ++. ...+|++|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 47999999999987763 333 23579999995
No 65
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=82.99 E-value=0.79 Score=49.20 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.4
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEecccccCCCCCCEEEEEeCCCCCCHH
Q 005748 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (679)
Q Consensus 254 ~~f~AIaELIDNS~DA~-----At~V~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (679)
.+.-++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++..
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 46678999999999986 56788877641 1235678999999999875
No 66
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=80.14 E-value=0.3 Score=37.92 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=23.6
Q ss_pred CCCCCceeccc-hhhhhhcCCC-CCCCC-CCCCccccc
Q 005748 640 YKPDQEWVQCN-KCRKWRMLDP-GFDTK-SLPVEWYSH 674 (679)
Q Consensus 640 ~~~~~~wvQCd-~C~KWR~lp~-~~~~~-~lp~~W~C~ 674 (679)
+.+...||||| .|.+|-++.= ++... ..+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 44467899999 9999977653 33221 124889985
No 67
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=76.33 E-value=0.5 Score=39.30 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCceeccchhhhhhcCCC-CCCCC--CCCCccccc
Q 005748 642 PDQEWVQCNKCRKWRMLDP-GFDTK--SLPVEWYSH 674 (679)
Q Consensus 642 ~~~~wvQCd~C~KWR~lp~-~~~~~--~lp~~W~C~ 674 (679)
+...|||||.|..|-+..= ++... ..++.|+|.
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 4678999999999976541 23222 234789995
No 68
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=76.12 E-value=0.36 Score=56.67 Aligned_cols=33 Identities=33% Similarity=0.783 Sum_probs=26.2
Q ss_pred Cceeccc--hhhhhhcCCCCCC-CCCCCCcccccCC
Q 005748 644 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWYSHLY 676 (679)
Q Consensus 644 ~~wvQCd--~C~KWR~lp~~~~-~~~lp~~W~C~~n 676 (679)
.-|+||- .|.|||+||.... ..+++.+..|.|-
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~ 126 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMK 126 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCC
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCc
Confidence 5899998 9999999998764 3456777777764
No 69
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=75.61 E-value=1.3 Score=43.37 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=25.3
Q ss_pred CCccEEEEEecccccCC--CCCCEEEEEeCCCCCCHHHHHhhhh
Q 005748 271 ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 312 (679)
Q Consensus 271 At~V~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (679)
...|.|.+.. . ++...+.|.|+|.|++.+.+.+++.
T Consensus 130 ~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 130 ENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp CCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred CCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 4678887763 2 3567899999999999988877764
No 70
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.35 E-value=0.29 Score=41.12 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCceeccchhhhhhcCCC-CCCC--CCCCCcccccC
Q 005748 642 PDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWYSHL 675 (679)
Q Consensus 642 ~~~~wvQCd~C~KWR~lp~-~~~~--~~lp~~W~C~~ 675 (679)
+...|||||.|..|-+..= ++.. ...++.|+|..
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 59 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPD 59 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCC
Confidence 3578999999999965431 2221 23478999963
No 71
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.49 E-value=1.2 Score=37.40 Aligned_cols=33 Identities=21% Similarity=0.645 Sum_probs=23.7
Q ss_pred CCCceeccc--hhhhhhcCC-CCCCC------CCCCCccccc
Q 005748 642 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWYSH 674 (679)
Q Consensus 642 ~~~~wvQCd--~C~KWR~lp-~~~~~------~~lp~~W~C~ 674 (679)
....+|||| .|..|-+.. -++.. ..+|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 356899999 999997764 12221 1578999995
No 72
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=67.79 E-value=0.99 Score=37.24 Aligned_cols=31 Identities=16% Similarity=0.630 Sum_probs=20.1
Q ss_pred CceeccchhhhhhcCC-CCCCCCCC-CCccccc
Q 005748 644 QEWVQCNKCRKWRMLD-PGFDTKSL-PVEWYSH 674 (679)
Q Consensus 644 ~~wvQCd~C~KWR~lp-~~~~~~~l-p~~W~C~ 674 (679)
..|||||.|..|=++. .++..... .+.|+|.
T Consensus 31 ~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 31 SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 4799999999996543 12211122 3799996
No 73
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=66.82 E-value=2.5 Score=34.43 Aligned_cols=32 Identities=22% Similarity=0.731 Sum_probs=23.6
Q ss_pred CCceeccc--hhhhhhcCCC-CC-----CCCCCCCccccc
Q 005748 643 DQEWVQCN--KCRKWRMLDP-GF-----DTKSLPVEWYSH 674 (679)
Q Consensus 643 ~~~wvQCd--~C~KWR~lp~-~~-----~~~~lp~~W~C~ 674 (679)
...+|||| .|..|-+..= ++ ....+|++|+|.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45799999 5999988762 33 224578999995
No 74
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.94 E-value=1.9 Score=35.09 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.6
Q ss_pred CCCCCceeccc-hhhhhhcC
Q 005748 640 YKPDQEWVQCN-KCRKWRML 658 (679)
Q Consensus 640 ~~~~~~wvQCd-~C~KWR~l 658 (679)
+.++..||||| .|.+|=+.
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 55678999999 99999543
No 75
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.44 E-value=4.1 Score=35.38 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=21.4
Q ss_pred Cceeccch--hh-hhhcCCCCCCCCCCCCcccccC
Q 005748 644 QEWVQCNK--CR-KWRMLDPGFDTKSLPVEWYSHL 675 (679)
Q Consensus 644 ~~wvQCd~--C~-KWR~lp~~~~~~~lp~~W~C~~ 675 (679)
..+||||. |. .|=++.=--.....+++|||..
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~ 81 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 81 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTT
T ss_pred CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcC
Confidence 47999999 76 8977653212233357999963
No 76
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.16 E-value=5.7 Score=32.76 Aligned_cols=31 Identities=19% Similarity=0.630 Sum_probs=21.4
Q ss_pred Cceeccch--hh-hhhcCCC-CCCCCCCCCcccccC
Q 005748 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWYSHL 675 (679)
Q Consensus 644 ~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~~ 675 (679)
..+||||. |. .|=++.= ++. ..-.++|||..
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp~ 61 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPR 61 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCTT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECCC
Confidence 57999999 87 7977653 232 23348999963
No 77
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.70 E-value=5.6 Score=31.92 Aligned_cols=30 Identities=20% Similarity=0.617 Sum_probs=20.3
Q ss_pred Cceeccch--hh-hhhcCCC-CCCCCCCCCccccc
Q 005748 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 644 ~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
..+||||. |. .|=++.= ++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 8976652 232 2335799994
No 78
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=44.53 E-value=5.7 Score=31.54 Aligned_cols=30 Identities=17% Similarity=0.599 Sum_probs=20.2
Q ss_pred Cceeccch--hh-hhhcCCC-CCCCCCCCCccccc
Q 005748 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 644 ~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
..+||||. |. .|=++.= ++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 57999999 77 7976652 222 2234899994
No 79
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.31 E-value=4.9 Score=33.17 Aligned_cols=32 Identities=16% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCceeccchhhhhhcCCC-CCCCCC------CCCccccc
Q 005748 643 DQEWVQCNKCRKWRMLDP-GFDTKS------LPVEWYSH 674 (679)
Q Consensus 643 ~~~wvQCd~C~KWR~lp~-~~~~~~------lp~~W~C~ 674 (679)
...|||||.|..|-+..= ++.... .++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 358999999999966531 222111 36889984
No 80
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=44.24 E-value=3.7 Score=45.76 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCCCceeccchhhhhhcCCC-CCCC--CCCCCccccc
Q 005748 641 KPDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWYSH 674 (679)
Q Consensus 641 ~~~~~wvQCd~C~KWR~lp~-~~~~--~~lp~~W~C~ 674 (679)
.+...|||||.|..|-+..= ++.. ...+++|+|.
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 83 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCP 83 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECC
Confidence 34678999999999966541 2322 2346889994
No 81
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=44.13 E-value=12 Score=36.90 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 005748 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (679)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (679)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 4599999999999999998 5999999997
No 82
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=43.92 E-value=7.6 Score=43.60 Aligned_cols=34 Identities=24% Similarity=0.726 Sum_probs=24.8
Q ss_pred CCCCceeccchhhhhhcCC-CCCCC--CCCCCccccc
Q 005748 641 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWYSH 674 (679)
Q Consensus 641 ~~~~~wvQCd~C~KWR~lp-~~~~~--~~lp~~W~C~ 674 (679)
-++..|||||.|..|=+.. -++.. ....++|+|-
T Consensus 53 n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp 89 (528)
T 3pur_A 53 KNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCP 89 (528)
T ss_dssp TSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCT
T ss_pred CcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECc
Confidence 3678999999999998764 23322 3456899994
No 83
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=39.12 E-value=12 Score=32.46 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=20.6
Q ss_pred Cceeccchhh---hhhcCCC-CCCCCCCCCccccc
Q 005748 644 QEWVQCNKCR---KWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 644 ~~wvQCd~C~---KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
..+|+||.|. .|=++.= ++. ....++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 3699999977 8977652 332 2334799995
No 84
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=36.33 E-value=8.5 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 005748 83 DHNEWRRFLIYLQGRD 98 (679)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (679)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998775
No 85
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=35.49 E-value=9.6 Score=30.23 Aligned_cols=30 Identities=20% Similarity=0.676 Sum_probs=20.1
Q ss_pred Cceeccch--hh-hhhcCCC-CCCCCCCCCccccc
Q 005748 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 644 ~~wvQCd~--C~-KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
...|+||. |. .|=++.= ++. ..-.++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 57999999 65 8976652 222 2224899994
No 86
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=31.78 E-value=12 Score=32.92 Aligned_cols=20 Identities=30% Similarity=0.765 Sum_probs=15.5
Q ss_pred CCCCCceeccc-hhhhhhcCC
Q 005748 640 YKPDQEWVQCN-KCRKWRMLD 659 (679)
Q Consensus 640 ~~~~~~wvQCd-~C~KWR~lp 659 (679)
|.++..||||| .|..|=+..
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~ 33 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRE 33 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGG
T ss_pred cCCCCCEEEecCCcccccccc
Confidence 34567899998 999996653
No 87
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.68 E-value=12 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=20.1
Q ss_pred CCceeccchhh---hhhcCCC-CCCCCCCCCccccc
Q 005748 643 DQEWVQCNKCR---KWRMLDP-GFDTKSLPVEWYSH 674 (679)
Q Consensus 643 ~~~wvQCd~C~---KWR~lp~-~~~~~~lp~~W~C~ 674 (679)
...+||||.|. .|=++.= ++. ....++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccC-cCCCCCEECC
Confidence 34899999974 7865541 222 2346899994
Done!