Query 005751
Match_columns 679
No_of_seqs 193 out of 1376
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 13:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 8E-165 2E-169 1305.4 37.3 623 1-661 133-769 (785)
2 PTZ00272 heat shock protein 83 100.0 1E-157 2E-162 1348.6 62.7 611 1-645 63-677 (701)
3 PTZ00130 heat shock protein 90 100.0 2E-157 4E-162 1346.9 61.4 628 1-646 126-766 (814)
4 KOG0019 Molecular chaperone (H 100.0 4E-154 9E-159 1257.7 45.2 556 1-645 93-654 (656)
5 COG0326 HtpG Molecular chapero 100.0 6E-151 1E-155 1256.1 53.6 549 1-636 65-622 (623)
6 PF00183 HSP90: Hsp90 protein; 100.0 6E-134 1E-138 1130.3 41.4 505 120-653 1-512 (531)
7 PRK05218 heat shock protein 90 100.0 3E-129 7E-134 1111.2 56.8 541 1-637 64-613 (613)
8 PRK14083 HSP90 family protein; 100.0 2E-122 4E-127 1048.4 54.2 524 1-639 53-596 (601)
9 PF13589 HATPase_c_3: Histidin 99.0 1.1E-10 2.4E-15 110.4 4.0 77 1-85 22-103 (137)
10 TIGR00585 mutl DNA mismatch re 98.7 3.3E-08 7.1E-13 106.0 9.8 136 1-146 42-193 (312)
11 PRK04184 DNA topoisomerase VI 98.1 8.6E-06 1.9E-10 93.0 9.4 116 10-136 75-201 (535)
12 PRK00095 mutL DNA mismatch rep 98.1 7.5E-05 1.6E-09 87.4 17.0 126 1-137 42-180 (617)
13 TIGR01052 top6b DNA topoisomer 98.0 1.5E-05 3.2E-10 90.1 9.5 116 11-136 66-192 (488)
14 PRK14868 DNA topoisomerase VI 97.7 9.2E-05 2E-09 86.9 8.9 122 2-136 72-207 (795)
15 COG1389 DNA topoisomerase VI, 97.5 0.00033 7.2E-09 77.5 9.0 130 1-140 61-205 (538)
16 COG0323 MutL DNA mismatch repa 97.2 0.00062 1.3E-08 80.0 7.8 136 1-145 43-193 (638)
17 smart00433 TOP2c Topoisomerase 97.0 0.001 2.2E-08 77.7 6.6 124 1-136 25-163 (594)
18 PRK05559 DNA topoisomerase IV 97.0 0.0012 2.6E-08 77.5 6.9 128 1-136 61-199 (631)
19 PF02518 HATPase_c: Histidine 96.9 0.00048 1.1E-08 61.7 1.9 79 3-115 31-109 (111)
20 PRK14867 DNA topoisomerase VI 96.7 0.0032 6.9E-08 73.8 7.5 116 11-136 74-198 (659)
21 PRK05644 gyrB DNA gyrase subun 96.6 0.0041 8.9E-08 73.2 7.5 134 1-145 61-207 (638)
22 TIGR01055 parE_Gneg DNA topois 96.6 0.0045 9.8E-08 72.7 7.5 138 1-146 54-203 (625)
23 TIGR01059 gyrB DNA gyrase, B s 96.6 0.0035 7.6E-08 74.1 6.4 132 1-144 54-197 (654)
24 PRK14939 gyrB DNA gyrase subun 96.5 0.0063 1.4E-07 72.6 8.0 134 1-147 61-209 (756)
25 TIGR01058 parE_Gpos DNA topois 93.9 0.15 3.3E-06 60.2 8.0 137 1-146 58-206 (637)
26 KOG0019 Molecular chaperone (H 93.4 0.0018 3.9E-08 73.9 -8.5 223 374-609 376-603 (656)
27 COG0187 GyrB Type IIA topoisom 92.4 0.43 9.3E-06 55.6 8.5 139 1-147 60-210 (635)
28 smart00387 HATPase_c Histidine 92.3 0.17 3.7E-06 43.1 4.1 53 8-71 36-88 (111)
29 PLN03237 DNA topoisomerase 2; 92.1 0.38 8.2E-06 61.1 8.1 139 1-148 102-260 (1465)
30 PHA02569 39 DNA topoisomerase 92.0 0.3 6.6E-06 57.4 6.7 134 1-147 72-223 (602)
31 PRK10549 signal transduction h 91.8 0.15 3.2E-06 56.7 3.8 73 10-115 385-457 (466)
32 PRK10755 sensor protein BasS/P 91.6 0.19 4.2E-06 53.9 4.4 75 6-116 276-350 (356)
33 KOG1978 DNA mismatch repair pr 91.5 0.24 5.2E-06 57.9 5.2 101 1-113 40-146 (672)
34 PLN03128 DNA topoisomerase 2; 91.4 0.39 8.5E-06 60.1 7.1 141 1-147 77-234 (1135)
35 PRK09470 cpxA two-component se 91.1 0.21 4.6E-06 55.1 4.1 78 5-115 379-456 (461)
36 PRK10604 sensor protein RstB; 90.7 0.22 4.7E-06 55.6 3.8 77 6-115 346-422 (433)
37 PRK11100 sensory histidine kin 90.5 0.33 7.1E-06 53.6 4.9 75 7-115 398-472 (475)
38 PTZ00108 DNA topoisomerase 2-l 89.4 0.81 1.8E-05 58.2 7.5 137 1-147 85-241 (1388)
39 cd00075 HATPase_c Histidine ki 88.6 0.64 1.4E-05 38.8 4.2 54 10-75 34-91 (103)
40 PRK09303 adaptive-response sen 88.3 0.52 1.1E-05 51.8 4.5 48 10-69 306-353 (380)
41 TIGR02956 TMAO_torS TMAO reduc 88.3 0.64 1.4E-05 56.9 5.6 51 5-67 606-657 (968)
42 TIGR01386 cztS_silS_copS heavy 87.9 0.51 1.1E-05 51.9 4.1 79 2-114 376-456 (457)
43 PTZ00109 DNA gyrase subunit b; 87.8 1.6 3.4E-05 53.3 8.2 141 1-146 153-356 (903)
44 TIGR02916 PEP_his_kin putative 87.8 0.38 8.2E-06 57.1 3.1 76 1-114 601-678 (679)
45 PRK15347 two component system 87.6 0.62 1.3E-05 56.6 4.9 78 1-115 534-613 (921)
46 TIGR02938 nifL_nitrog nitrogen 87.6 0.55 1.2E-05 51.7 4.1 71 8-114 422-492 (494)
47 TIGR02966 phoR_proteo phosphat 87.5 0.6 1.3E-05 48.5 4.1 50 9-68 261-310 (333)
48 PRK11006 phoR phosphate regulo 86.9 0.59 1.3E-05 51.9 3.8 75 8-115 348-422 (430)
49 KOG1977 DNA mismatch repair pr 86.1 0.37 8E-06 56.4 1.7 103 2-113 42-149 (1142)
50 KOG1979 DNA mismatch repair pr 85.8 2.5 5.5E-05 48.9 8.0 123 1-137 47-186 (694)
51 PRK11466 hybrid sensory histid 85.7 0.97 2.1E-05 55.1 5.1 46 9-68 592-637 (914)
52 PRK10815 sensor protein PhoQ; 85.4 0.99 2.2E-05 51.5 4.8 71 10-117 409-479 (485)
53 PRK09467 envZ osmolarity senso 84.8 1.1 2.4E-05 49.3 4.6 79 2-115 352-432 (435)
54 PRK11360 sensory histidine kin 81.9 1.3 2.8E-05 50.1 3.7 21 10-30 534-554 (607)
55 PRK10841 hybrid sensory kinase 80.7 1.7 3.6E-05 53.9 4.4 49 10-68 594-642 (924)
56 PRK11091 aerobic respiration c 79.8 2.3 5E-05 51.1 5.1 58 10-76 431-492 (779)
57 PRK11107 hybrid sensory histid 79.8 1.9 4.1E-05 52.4 4.4 48 11-68 446-493 (919)
58 PRK10364 sensor protein ZraS; 78.5 2.7 5.9E-05 47.0 4.9 24 7-30 378-401 (457)
59 PRK10618 phosphotransfer inter 77.9 2.4 5.1E-05 52.4 4.5 48 10-68 600-647 (894)
60 PRK10337 sensor protein QseC; 77.0 2.6 5.6E-05 46.7 4.1 46 10-68 381-426 (449)
61 TIGR03785 marine_sort_HK prote 76.2 2.5 5.4E-05 50.7 4.0 58 2-69 620-679 (703)
62 PRK10490 sensor protein KdpD; 76.0 2.4 5.3E-05 52.3 3.9 48 9-68 810-857 (895)
63 PRK15053 dpiB sensor histidine 74.7 3.9 8.4E-05 46.6 4.9 71 10-116 469-539 (545)
64 PRK13837 two-component VirA-li 74.1 3 6.5E-05 50.8 4.0 42 11-68 609-650 (828)
65 PRK09959 hybrid sensory histid 72.1 3.7 8.1E-05 51.8 4.3 70 11-115 866-935 (1197)
66 PRK10600 nitrate/nitrite senso 69.5 3.5 7.6E-05 47.8 3.0 17 8-24 499-515 (569)
67 PRK10547 chemotaxis protein Ch 65.7 11 0.00023 45.3 6.0 19 10-28 430-448 (670)
68 PRK13557 histidine kinase; Pro 62.6 6.3 0.00014 44.2 3.3 20 11-30 326-345 (540)
69 PRK03660 anti-sigma F factor; 60.0 14 0.0003 34.5 4.6 15 9-23 74-88 (146)
70 PF06112 Herpes_capsid: Gammah 52.9 16 0.00035 35.5 3.7 37 573-609 15-60 (147)
71 PRK09835 sensor kinase CusS; P 51.7 11 0.00025 41.8 3.0 22 9-30 407-428 (482)
72 TIGR01925 spIIAB anti-sigma F 51.0 22 0.00047 32.9 4.3 15 8-22 73-87 (137)
73 PF12588 PSDC: Phophatidylseri 47.9 35 0.00075 33.1 5.1 53 580-635 2-59 (141)
74 COG0642 BaeS Signal transducti 42.0 22 0.00047 36.1 3.0 18 10-27 260-277 (336)
75 PRK13560 hypothetical protein; 37.1 19 0.00042 42.6 2.0 15 10-24 748-762 (807)
76 COG1578 Uncharacterized conser 32.0 2.9E+02 0.0062 29.8 9.3 22 533-557 215-236 (285)
77 PRK04069 serine-protein kinase 31.3 39 0.00083 32.8 2.7 24 4-27 72-95 (161)
78 COG2972 Predicted signal trans 31.2 55 0.0012 37.2 4.3 21 10-30 387-407 (456)
79 COG0643 CheA Chemotaxis protei 29.9 27 0.00058 42.3 1.5 93 10-116 477-573 (716)
80 PRK11086 sensory histidine kin 29.6 50 0.0011 37.3 3.6 22 9-30 467-488 (542)
81 KOG1845 MORC family ATPases [C 28.1 48 0.001 40.3 3.2 62 12-88 2-64 (775)
82 COG3850 NarQ Signal transducti 27.8 36 0.00077 39.7 2.0 62 5-117 508-569 (574)
83 COG4585 Signal transduction hi 27.8 31 0.00067 37.7 1.5 26 2-27 303-328 (365)
84 PF04122 CW_binding_2: Putativ 27.6 1.6E+02 0.0035 25.6 5.7 56 430-488 24-80 (92)
85 COG3290 CitA Signal transducti 26.5 57 0.0012 38.0 3.3 40 10-64 463-502 (537)
86 COG4251 Bacteriophytochrome (l 25.5 1E+02 0.0022 36.9 5.1 56 1-68 659-716 (750)
87 COG3920 Signal transduction hi 22.9 52 0.0011 33.9 2.0 16 10-25 160-175 (221)
88 PRK11889 flhF flagellar biosyn 22.3 1.2E+03 0.026 26.8 12.5 80 412-493 250-332 (436)
89 COG4813 ThuA Trehalose utiliza 20.7 43 0.00092 34.1 0.8 57 531-590 89-146 (261)
90 PRK04081 hypothetical protein; 20.3 2.5E+02 0.0053 28.9 6.0 47 83-133 51-97 (207)
91 PF12641 Flavodoxin_3: Flavodo 20.1 7.2E+02 0.016 24.4 9.2 127 416-591 10-141 (160)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-165 Score=1305.41 Aligned_cols=623 Identities=60% Similarity=1.004 Sum_probs=572.0
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCC-----CCcccccccceeeeeeeccEEEEEe
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-----LNLIGQFGVGFYSVYLVADYVEVIS 75 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~-----~~~IGqFGIGf~S~FmVad~V~V~T 75 (679)
|+|..|++++.|.|.|+|||||+++|++||||||+|||++|++++++.++ .++||||||||||||+|||+|+|+|
T Consensus 133 ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVts 212 (785)
T KOG0020|consen 133 IKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTS 212 (785)
T ss_pred EEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEe
Confidence 67899999999999999999999999999999999999999999986433 3799999999999999999999999
Q ss_pred ecCCCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCC
Q 005751 76 KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 155 (679)
Q Consensus 76 k~~~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~ 155 (679)
|++++.+|+|+|++. +|+|..+|++++.+|||.|+|||++++.+||++++++++|++||+||+|||++|..++++.++|
T Consensus 213 KhNdD~QyiWESdan-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~p 291 (785)
T KOG0020|consen 213 KHNDDSQYIWESDAN-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVP 291 (785)
T ss_pred ccCCccceeeeccCc-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecc
Confidence 999999999999986 9999999999999999999999999999999999999999999999999999999998877776
Q ss_pred CCCCCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhC
Q 005751 156 TDEDDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVK 235 (679)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~ 235 (679)
-+|+++..++ + .+ +.+..++++++++|++++|++++|+|+.+|..+|||+|+|++||++||..|||++++
T Consensus 292 vEEe~~t~e~-------~--~e-d~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsK 361 (785)
T KOG0020|consen 292 VEEEEETEED-------S--TE-DKEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSK 361 (785)
T ss_pred cccccccccc-------c--cc-chhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhc
Confidence 5443322110 0 00 000223333333589999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCC
Q 005751 236 DFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTL 315 (679)
Q Consensus 236 ~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DL 315 (679)
++ .+||+|+||.+||.|.|++|||||+.+|.++|+.|+...+.+|+||||||||+|++.+++|+||+||||||||+||
T Consensus 362 ds--~dPma~~HF~aEGeVtFksiLyVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdL 439 (785)
T KOG0020|consen 362 DS--TDPMAYIHFTAEGEVTFKSILYVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDL 439 (785)
T ss_pred cc--cCccceeeeeccccEEEEEEEEeCCCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcC
Confidence 99 8999999999999999999999999999999999887778999999999999999999999999999999999999
Q ss_pred CCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHH-HHHHHhHHhhhhccc
Q 005751 316 PLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTK-FWNEFGKSIKLGIIE 394 (679)
Q Consensus 316 pLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~k-f~~~~~~~lK~G~~e 394 (679)
|||||||+||++++|++|+++|++|+|+||+++|.+ +|.. ||++||.+||+|+++
T Consensus 440 PLNVSrE~LQQHkllKvIkKKLvrK~LDmikKia~e------------------------~~~d~FW~EFgtniKLGviE 495 (785)
T KOG0020|consen 440 PLNVSRETLQQHKLLKVIKKKLVRKVLDMIKKIAGE------------------------KYDDIFWKEFGTNIKLGVIE 495 (785)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------ccchHHHHHhccceeeeeee
Confidence 999999999999999999999999999999999987 5766 999999999999999
Q ss_pred CHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHH
Q 005751 395 DAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQ 474 (679)
Q Consensus 395 D~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~ 474 (679)
|+.||.+|++||||+||.++++.+||++|++|||+.|+.|||++|.|++++..|||+|++.+|||||||+++|+||||||
T Consensus 496 D~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciq 575 (785)
T KOG0020|consen 496 DPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQ 575 (785)
T ss_pred CcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceEeeccccccCCCCcc--h--HHhHHHHHHHHHHHHhh-cCCCCccEEEEeecCCCCcEEEEecCCCchHH
Q 005751 475 YLMDYEDKKFQNVSKEGLKLGKDTK--D--KELKESFKELTKWWKGA-LASENVDDVKVSNRLDNTPCVVVTSKYGWSAN 549 (679)
Q Consensus 475 ~L~~~~gk~f~sV~~~~~~l~~~ek--~--~~~~~e~~~L~~~lK~~-L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~ 549 (679)
.|.+|+|++||+|.++++.+++.+| + +..+++|+||+.|||.. |.++ |++++||+||++|||+||++.+|||.+
T Consensus 576 alpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~alkd~-ieka~vSqrL~~spcalVas~~GwsgN 654 (785)
T KOG0020|consen 576 ALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGN 654 (785)
T ss_pred hhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHhccCchhhhhhhcccccc
Confidence 9999999999999999999986663 2 55788999999999984 6787 999999999999999999999999999
Q ss_pred HHHHHHHhccc---chhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005751 550 MERIMQSQTLS---DASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFAS 626 (679)
Q Consensus 550 Merimk~q~~~---~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~ 626 (679)
|+|||++|+++ +...+-|+.+|++|||||+||||+.|+.++..++.++.++++|.+||.+|.|.+||.+.|+..|+.
T Consensus 655 mERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fad 734 (785)
T KOG0020|consen 655 MERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFAD 734 (785)
T ss_pred HHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHH
Confidence 99999999987 444445788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcccCcccCCCcchhhh
Q 005751 627 RIYSTVKSSLNISPDAAVEEEDDVEETDADTEMKE 661 (679)
Q Consensus 627 rln~lL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (679)
||.+||+..|+++.|+.++++..+++.|.++...+
T Consensus 735 rIe~~lr~sL~is~Da~ve~e~e~ee~E~~~~~ae 769 (785)
T KOG0020|consen 735 RIENMLRQSLNISPDAQVEEEIEEEEDEPETSEAE 769 (785)
T ss_pred HHHHHHHhhcCCCcccccccccccccCCCCccccc
Confidence 99999999999999998887665555554444333
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.1e-157 Score=1348.59 Aligned_cols=611 Identities=48% Similarity=0.851 Sum_probs=538.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.+|.++++|+|.|||||||++||.+||||||+|||+.|+++++.+.+.++|||||||||||||||++|+|+||++++
T Consensus 63 I~i~~d~~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~ 142 (701)
T PTZ00272 63 IRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD 142 (701)
T ss_pred EEEEEcCCCCEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC
Confidence 56777888899999999999999999999999999999999998865556789999999999999999999999999877
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCCCC
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDD 160 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~~~ 160 (679)
.+|.|+|+|+|+|+|..++. ....+||+|+|||+++..+|+++++|++||++||+||+|||+++..+....++++++++
T Consensus 143 ~~~~W~s~~~g~y~i~~~~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~ 221 (701)
T PTZ00272 143 ESYVWESSAGGTFTITSTPE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEE 221 (701)
T ss_pred ceEEEEECCCCcEEEEeCCC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhh
Confidence 89999999999999998753 34589999999999999999999999999999999999999998655443333221110
Q ss_pred CchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCCCCCC
Q 005751 161 SSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDE 240 (679)
Q Consensus 161 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~ 240 (679)
....+ + ++.+++++.+..+++++++++++++++.+++|++||+++|||+|+|++||+|||.+|||+++++| +
T Consensus 222 ~~~~~---~---~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~--~ 293 (701)
T PTZ00272 222 DTKKA---D---EDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDW--E 293 (701)
T ss_pred hcccc---c---ccccccccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCc--C
Confidence 00000 0 00011111011111222345566777778899999999999999999999999999999999999 8
Q ss_pred CCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCCCCccc
Q 005751 241 KPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVS 320 (679)
Q Consensus 241 ~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNvS 320 (679)
+||+|+||++||+++|+||||||+.+|+++|+. +..+++|+||||||||+|+|++|||+||+||||||||+|||||||
T Consensus 294 ~Pl~~ih~~~eg~~~~~~llyiP~~~~~~~~~~--~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvS 371 (701)
T PTZ00272 294 DPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP--NKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNIS 371 (701)
T ss_pred CCceeeeeccCCceeeEEEEEeCCCCccchhhh--hhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccC
Confidence 999999999999999999999999999998864 135689999999999999999999999999999999999999999
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccCHHhHH
Q 005751 321 REMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRN 400 (679)
Q Consensus 321 RE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~ 400 (679)
||+||+|++|++||+.|++||+++|.++|++ +++|.+||++||.+||+|+++|+.||+
T Consensus 372 RE~LQ~~~~l~~i~~~i~~ki~~~l~~la~~----------------------~~~y~~f~~~~g~~lK~G~~~D~~~~~ 429 (701)
T PTZ00272 372 RENLQQNKILKVIRKNIVKKCLEMFDEVAEN----------------------KEDYKQFYEQFGKNIKLGIHEDTANRK 429 (701)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHhhC----------------------HHHHHHHHHHHhhhhheeeccCHhHHH
Confidence 9999999999999999999999999999876 579999999999999999999999999
Q ss_pred HHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcC
Q 005751 401 RLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYE 480 (679)
Q Consensus 401 ~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~ 480 (679)
+|++||||+||.++++++||++|++|||++|+.|||++|+|++++++|||+|.|++||+|||||+||||+|||++|++|+
T Consensus 430 ~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~ 509 (701)
T PTZ00272 430 KLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFE 509 (701)
T ss_pred HHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcC
Confidence 99999999999876789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHHHHH
Q 005751 481 DKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQS 556 (679)
Q Consensus 481 gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimk~ 556 (679)
|++|+||++++++++..+ +. +..++++++|++|||++||++ |.+|++|+||++||||||++++|+|++|+|||++
T Consensus 510 ~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~k-V~~VkvS~RL~~sPa~lv~~e~g~s~~Merimka 588 (701)
T PTZ00272 510 DKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRN 588 (701)
T ss_pred CCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHHhCCc-ccEEEEeccCCCCCeEEEecccchhHHHHHHHHh
Confidence 999999999998875322 11 344568999999999999999 9999999999999999999999999999999999
Q ss_pred hcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q 005751 557 QTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSL 636 (679)
Q Consensus 557 q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~lL~~~L 636 (679)
|+++...+..+|..++||||||+||||++|++++..+++++.++++|+||||+|+|++|+.++||++|++|+|+||..+|
T Consensus 589 q~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l 668 (701)
T PTZ00272 589 QALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGL 668 (701)
T ss_pred cccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 97543222335668999999999999999988765666677799999999999999999999999999999999998899
Q ss_pred CCCCCCCCC
Q 005751 637 NISPDAAVE 645 (679)
Q Consensus 637 ~~~~~~~~~ 645 (679)
+++.++++.
T Consensus 669 ~~~~~~~~~ 677 (701)
T PTZ00272 669 SLDEEEEEA 677 (701)
T ss_pred CCCcccccc
Confidence 999988763
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.9e-157 Score=1346.87 Aligned_cols=628 Identities=42% Similarity=0.721 Sum_probs=541.6
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhc-CCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~-~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+|+++++|+|+|||||||++||++||||||+|||+.|+++++. +.+.++||||||||||||||||+|+|+||+++
T Consensus 126 I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~ 205 (814)
T PTZ00130 126 IRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN 205 (814)
T ss_pred EEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC
Confidence 67888899999999999999999999999999999999999999874 34578999999999999999999999999988
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCCC
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDED 159 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~~ 159 (679)
+.+|+|+|+|+|+|+|.+++++.+.+|||+|+|||+++..+|++.++|++||++||+||+|||++++.++...+++.++.
T Consensus 206 ~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~ 285 (814)
T PTZ00130 206 DEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIA 285 (814)
T ss_pred CceEEEEECCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccc
Confidence 88999999999999999986656678999999999999999999999999999999999999999875533333322110
Q ss_pred CCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCCCCC
Q 005751 160 DSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSD 239 (679)
Q Consensus 160 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~ 239 (679)
++.+ + ++..++++. ++.++.++++++|++.+.+|++||+++|||+|+|++||+|+|.+|||+++++|
T Consensus 286 ~~~~--~-----~~~~~~~e~----~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~-- 352 (814)
T PTZ00130 286 KEME--N-----DPNYDSVKV----EETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFN-- 352 (814)
T ss_pred cccc--c-----ccccccccc----cccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCc--
Confidence 0000 0 000001111 10111245567777778899999999999999999999999999999999999
Q ss_pred CCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCCCCcc
Q 005751 240 EKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNV 319 (679)
Q Consensus 240 ~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNv 319 (679)
++||+|+||++||+++|+||||||+.+|+++|.. ...+++|+||||||||+|+|++|||+||+||||||||+||||||
T Consensus 353 ~dPl~~iH~~~Eg~~~~~~LLYIP~~ap~~~~~~--~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNV 430 (814)
T PTZ00130 353 DEPLYHIHFFAEGEIEFKCLIYIPSRAPSINDHL--FTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNV 430 (814)
T ss_pred cCCceeeeeccCCCeeEEEEEEecCCCccchhhh--hhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCcc
Confidence 8999999999999999999999999999987641 13578999999999999999999999999999999999999999
Q ss_pred chhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCC-----cCCCCcccccc---cCCCccchhhHHHHHHHHhHHhhhh
Q 005751 320 SREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDE-----STGKDKKDVEK---FSDDDDKKGQYTKFWNEFGKSIKLG 391 (679)
Q Consensus 320 SRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~-----~~~~~~~~~~~---~~~~~~~~e~y~kf~~~~~~~lK~G 391 (679)
|||+||+|++|++||+.|++||+++|.++++++..+ ++..++++.++ ......+|++|.+||++||.+||+|
T Consensus 431 SRE~LQ~n~~l~~Irk~l~kkil~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~G 510 (814)
T PTZ00130 431 SREQLQQNKILKAVSKRIVRKILDTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTG 510 (814)
T ss_pred CHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999841111 11111111111 1122247889999999999999999
Q ss_pred cccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHH
Q 005751 392 IIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEY 471 (679)
Q Consensus 392 ~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~ 471 (679)
|++|+.||++|++||||+||.+ ++++||++|++||+++|+.|||++|++++++++|||+|.|+++|+|||||++|||||
T Consensus 511 v~eD~~nre~l~~LLrF~Ss~~-~~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~ 589 (814)
T PTZ00130 511 CYEDDINRNKIVKLLLFKTMLH-PKSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDES 589 (814)
T ss_pred hhcCHHHHHHHHHhheeeeCCC-CCccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHH
Confidence 9999999999999999999986 368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCch
Q 005751 472 LMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWS 547 (679)
Q Consensus 472 ~i~~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s 547 (679)
|+++|.+|+|++|++|++++++++..+ ++ +..++++++|++|||++|+++ |.+|++|+||++||||||++++|+|
T Consensus 590 ~l~~L~e~~gk~~~sV~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~~-V~~V~vS~RL~~sPa~lv~~e~g~s 668 (814)
T PTZ00130 590 CVQRVQEYDGKKFKSIQKGEITFELTEDEKKKEEKVKKMYKALIDVISDTLRNQ-IFKVEISRRLVDAPCAVVSTEWGLS 668 (814)
T ss_pred HHHHHHHhcCceEEEeccccccccccccchhhhhHHHHHHHHHHHHHHHHhcCc-ccEEEEeccCCCCCcEEEecCcccc
Confidence 999999999999999999988875222 22 344567999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005751 548 ANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASR 627 (679)
Q Consensus 548 ~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~r 627 (679)
++|+|||++|... ++++.++..+|||||||+||||++|+.+...+++++.++++|+||||+|+|++|++++||++|++|
T Consensus 669 ~~Merimka~~~~-~~~~~~~~~k~iLEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~r 747 (814)
T PTZ00130 669 GQMEKLMKINVNN-SDQIKAMSGQKILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQI 747 (814)
T ss_pred HHHHHHHHHhhcc-ccccccccCCeEEEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999999998532 222235678999999999999999987665566666799999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCc
Q 005751 628 IYSTVKSSLNISPDAAVEE 646 (679)
Q Consensus 628 ln~lL~~~L~~~~~~~~~~ 646 (679)
+|+||..+|++++++++++
T Consensus 748 i~~ll~~~l~~~~~~~~~~ 766 (814)
T PTZ00130 748 VYDHINQKLGVDNNLKIDD 766 (814)
T ss_pred HHHHHHHhcCCCccccccc
Confidence 9999999999999887766
No 4
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-154 Score=1257.72 Aligned_cols=556 Identities=44% Similarity=0.818 Sum_probs=532.6
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhh-cCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-TSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~-~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+|+++++|+|.|+|||||++||++||||||+|||+.|+++++ ++++.++||||||||||+|||||+|+|+||+++
T Consensus 93 I~i~~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~ 172 (656)
T KOG0019|consen 93 IRIITNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPA 172 (656)
T ss_pred EEeccCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCC
Confidence 7899999999999999999999999999999999999999999999 578889999999999999999999999999998
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCCC
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDED 159 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~~ 159 (679)
+++|.|+|+|+|+|+|..++ ...+||+|+||||++..+|+++.+++++|+|||.||.|||++++
T Consensus 173 ~e~y~Wes~~~gs~~v~~~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~------------- 236 (656)
T KOG0019|consen 173 DEGLQWTSNGRGSYEIAEAS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG------------- 236 (656)
T ss_pred CcceeeecCCCCceEEeecc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh-------------
Confidence 88999999999999999865 28999999999999888999999999999999999999999975
Q ss_pred CCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCCCCC
Q 005751 160 DSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSD 239 (679)
Q Consensus 160 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~ 239 (679)
+.+|..+|||+|+|++||.|||.+|||+++++|
T Consensus 237 ---------------------------------------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw-- 269 (656)
T KOG0019|consen 237 ---------------------------------------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDW-- 269 (656)
T ss_pred ---------------------------------------------hhhhccCcccccCchhhhHHHHHHHHHhhcccc--
Confidence 248999999999999999999999999999999
Q ss_pred CCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCCCCcc
Q 005751 240 EKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNV 319 (679)
Q Consensus 240 ~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNv 319 (679)
++||++.||++||+++||+|||||.++|+++|.. ...++||+||+|||||+|+|.+++|+||+||+|||||+|||||+
T Consensus 270 ~d~lav~hf~~eg~lefrail~vP~rap~~lF~~--~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNi 347 (656)
T KOG0019|consen 270 DDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDM--RKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNL 347 (656)
T ss_pred cchhhHhhhccccceEEEEEEeccccCcchhhhh--hhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccch
Confidence 9999999999999999999999999999999975 35568999999999999999999999999999999999999999
Q ss_pred chhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccCHHhH
Q 005751 320 SREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANR 399 (679)
Q Consensus 320 SRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~ 399 (679)
|||+||++++|++||+.|++|++++|.++| + +++.|.+||++||++||+||++|.+|+
T Consensus 348 SremlQ~~~i~k~~rk~l~~k~l~~~~e~a-~---------------------d~e~Y~kFy~~f~~~lk~gi~e~s~~~ 405 (656)
T KOG0019|consen 348 SREMLQENAVLRKLRKVLPQKILEMFQDLA-K---------------------DAEKYKKFFKNYGLFLKEGIVTASEQQ 405 (656)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-h---------------------hHHHHHHHHHHHhhhhhhcccchhhhh
Confidence 999999999999999999999999999999 4 588999999999999999999999999
Q ss_pred HH-HhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHhhh
Q 005751 400 NR-LAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMD 478 (679)
Q Consensus 400 ~~-l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~ 478 (679)
.+ +++||||+||.+.++++||++|+.||+++|+.|||++|+|+.++++|||+|.++++|+|||||.+||||+++++|.+
T Consensus 406 ~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~ 485 (656)
T KOG0019|consen 406 VKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKE 485 (656)
T ss_pred hhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhh
Confidence 99 99999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEeeccccccCCCCc---ch-HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHHH
Q 005751 479 YEDKKFQNVSKEGLKLGKDT---KD-KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIM 554 (679)
Q Consensus 479 ~~gk~f~sV~~~~~~l~~~e---k~-~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merim 554 (679)
|+|++|++|+++++++++++ ++ ++.+.+|+.||.|||+.||++ |++|++|.||+++|||||++++||+++|+|+|
T Consensus 486 ~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~k-VekV~vs~RlvssPc~I~t~~~gwsAnmeriM 564 (656)
T KOG0019|consen 486 FKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSK-VEKVTVNNRLVSHPAMITTLEYGWAARMERIM 564 (656)
T ss_pred hcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCc-eEEEEecCcccCCceEEEecccccchhHHHHH
Confidence 99999999999999998433 22 666779999999999999999 99999999999999999999999999999999
Q ss_pred HHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 005751 555 QSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKS 634 (679)
Q Consensus 555 k~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~lL~~ 634 (679)
++|++.++...++|.++++|||||+||||+.|.+++..|+++ .+++++.|||++|+|++||.++||+.|+.|+|+||..
T Consensus 565 kAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~ 643 (656)
T KOG0019|consen 565 KAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKS 643 (656)
T ss_pred hhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHH
Confidence 999999888888999999999999999999999999999887 9999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCC
Q 005751 635 SLNISPDAAVE 645 (679)
Q Consensus 635 ~L~~~~~~~~~ 645 (679)
+|+.+.+.+.+
T Consensus 644 ~l~~~e~~~~~ 654 (656)
T KOG0019|consen 644 GLGRDEDEVEE 654 (656)
T ss_pred HhccCCCcccC
Confidence 99988866544
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-151 Score=1256.06 Aligned_cols=549 Identities=46% Similarity=0.811 Sum_probs=511.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC-CCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+|++++||+|.|||||||++|+++||||||+|||++|++.+..+ .+.++||||||||||||||||+|+|+||+++
T Consensus 65 I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~ 144 (623)
T COG0326 65 IRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAG 144 (623)
T ss_pred EEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCC
Confidence 788999999999999999999999999999999999999999998754 3789999999999999999999999999995
Q ss_pred -CCceEEEeCCCCcEEEEeCCCCCCCC-CceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCC
Q 005751 80 -DKQYVWESKADGAFAISEDTWNEPLG-RGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTD 157 (679)
Q Consensus 80 -~~~~~w~s~g~~~y~i~~~~~~~~~~-~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~ 157 (679)
+++++|+|+|+|+|+|+..++ .+ +||+|+|||+++..+|++.++|++||++||+||++||++.+++..+
T Consensus 145 ~~~~~~W~S~g~g~ytv~~~~~---~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~------ 215 (623)
T COG0326 145 EDEAYHWESDGEGEYTVEDIDK---EPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKD------ 215 (623)
T ss_pred CCcceEEEEcCCCceEEeeccC---CCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeecccc------
Confidence 578999999999999999753 34 6999999999999999999999999999999999999997643110
Q ss_pred CCCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCCC
Q 005751 158 EDDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDF 237 (679)
Q Consensus 158 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~ 237 (679)
+ .+.+|++||+++|||+|+++++++|+|.+||++++++|
T Consensus 216 ------------------------~-----------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~ 254 (623)
T COG0326 216 ------------------------E-----------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDF 254 (623)
T ss_pred ------------------------c-----------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhccc
Confidence 0 02368999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCCCC
Q 005751 238 SDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPL 317 (679)
Q Consensus 238 ~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpL 317 (679)
++||.|+|+++||.++|++|||||.++|+|+|.+ ..++|++||||||||||+|.+|||+||+||||||||+||||
T Consensus 255 --~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl~~~---~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpL 329 (623)
T COG0326 255 --DDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRR---DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPL 329 (623)
T ss_pred --CCCeEEEecccccceEEEEEEEccCCCCcccccc---cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCc
Confidence 9999999999999999999999999999999976 55789999999999999999999999999999999999999
Q ss_pred ccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccCHH
Q 005751 318 NVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAA 397 (679)
Q Consensus 318 NvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~ 397 (679)
|||||+||+|++++.||+.|++||+++|++||++ +|++|.+||++||.+||+|+++|+.
T Consensus 330 NvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~~---------------------~~e~y~~f~~~fg~~LKeG~~eD~~ 388 (623)
T COG0326 330 NVSREILQQNRILAAIRKALTKKVLSMLEKLAKD---------------------DPEKYRKFWKQFGLVLKEGLYEDFE 388 (623)
T ss_pred ccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHhccccceec-CCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHh
Q 005751 398 NRNRLAKLLRFEST-KSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYL 476 (679)
Q Consensus 398 ~~~~l~~ll~f~ts-~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L 476 (679)
|+++|++||||.|| .+..+++||++|++||+++|+.|||+||++..++++||++|.|++||||||+|+|+||++++..+
T Consensus 389 n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~ 468 (623)
T COG0326 389 NKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTML 468 (623)
T ss_pred hHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhh
Confidence 99999999999994 45578999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEeeccccccCCCCc----ch-HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHH
Q 005751 477 MDYEDKKFQNVSKEGLKLGKDT----KD-KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANME 551 (679)
Q Consensus 477 ~~~~gk~f~sV~~~~~~l~~~e----k~-~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Me 551 (679)
.+|+|++|++|+++++.+...+ .. ++.+.++++|++++|++|++. |++|++|+||+++|||++++..+++.+|+
T Consensus 469 ~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~-vk~Vr~s~rl~dspa~l~~~~~~~~~~m~ 547 (623)
T COG0326 469 PEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDK-VKDVRLSHRLTDSPACLTTDGADLSTQME 547 (623)
T ss_pred hhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCc-cceeEeecccCCCcceeecCccchhHHHH
Confidence 9999999999999988875322 12 566778999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005751 552 RIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYST 631 (679)
Q Consensus 552 rimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~l 631 (679)
|+|++|++ ..+..++||||||+||||++|.... +...++++|++|||+|+|++|++++||++|++|+|++
T Consensus 548 r~l~~~~~------~~~~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~l 617 (623)
T COG0326 548 RLLKAQGQ------EVPESKKILEINPNHPLVKKLASLE----DEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDL 617 (623)
T ss_pred HHHHhccc------cCCccccceeeCcccHHHHHHHhcc----cHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 99998752 2236899999999999999999864 4566999999999999999999999999999999999
Q ss_pred HHhhc
Q 005751 632 VKSSL 636 (679)
Q Consensus 632 L~~~L 636 (679)
|.+++
T Consensus 618 l~~~~ 622 (623)
T COG0326 618 LSRLL 622 (623)
T ss_pred HHHhc
Confidence 98875
No 6
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=5.9e-134 Score=1130.27 Aligned_cols=505 Identities=58% Similarity=0.997 Sum_probs=420.4
Q ss_pred cccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCCCCCchHHHHhhhhhhhhcccCCCcccc---cccccCCCccc
Q 005751 120 EYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSESESEDED---EDSEKKPKTKT 196 (679)
Q Consensus 120 e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 196 (679)
+||++++|++||+|||.||+|||+++..++.++++++++++.++++. .+++....++++. ++++ +.+++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~-~~~~~~~~~~~~~-e~~~~eee~~~~~~k~k~ 78 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEK-EEEEKKEEEEEKV-EEEDEEEEKEEKKPKTKK 78 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HT-T-TT--------S-SEEEE----S-TTEEEEE
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhh-hhccccccccccc-cccccccccccccccccc
Confidence 69999999999999999999999999988776665543211111000 0000000001111 1111 11234567788
Q ss_pred ccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhc
Q 005751 197 VKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYN 276 (679)
Q Consensus 197 ~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~ 276 (679)
+++++++|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|..+
T Consensus 79 ~~~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~--~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~-- 154 (531)
T PF00183_consen 79 VKETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDY--DDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND-- 154 (531)
T ss_dssp CCEEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTS--S-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS--
T ss_pred cccceeecccccccCcccccchhccchHHHHHHHHHhhhcc--cCchhheeccccccceeeEEEEeCCCCchhhhhhh--
Confidence 88889999999999999999999999999999999999999 89999999999999999999999999999998652
Q ss_pred ccccCeEEEEeeEEeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 005751 277 TNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDES 356 (679)
Q Consensus 277 ~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~ 356 (679)
..+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||++
T Consensus 155 ~~~~~ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d----- 229 (531)
T PF00183_consen 155 KKKNGIKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKD----- 229 (531)
T ss_dssp TT--SEEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred hccccceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEE
Q 005751 357 TGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFY 436 (679)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY 436 (679)
+++|.+||++||.+||+||++|..||++|++||||+||.++++++||++|++||+++|+.|||
T Consensus 230 -----------------~e~y~~f~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY 292 (531)
T PF00183_consen 230 -----------------REKYEKFWKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYY 292 (531)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEE
T ss_pred -----------------HHHHHHHHHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceE
Confidence 679999999999999999999999999999999999999888999999999999999999999
Q ss_pred EeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHH
Q 005751 437 ITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTK 512 (679)
Q Consensus 437 ~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~ 512 (679)
++|++++++.+|||+|.|++||||||||++|||+|||++|++|+|++|++|++++++|++.+ +. +..++++++|++
T Consensus 293 ~~g~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~ 372 (531)
T PF00183_consen 293 LTGESREEAEQSPYLEAFKKKGYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTE 372 (531)
T ss_dssp EESSSHHHHHTSGGGHHHHHCT--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHH
T ss_pred EecchHHHHhhccchhhHHhhCceEEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987543 22 566789999999
Q ss_pred HHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcC
Q 005751 513 WWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVK 592 (679)
Q Consensus 513 ~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~ 592 (679)
|||++||++ |.+|++|.||++|||||+++++|+|++|+|||+||++++++++.+|..++||||||+||||++|++++..
T Consensus 373 ~~k~~L~~k-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~ 451 (531)
T PF00183_consen 373 WLKELLGDK-VEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEK 451 (531)
T ss_dssp HHHHHHTTS-CSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHC
T ss_pred HHHhhhhhh-hheecccccccCCcceeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcc
Confidence 999999999 9999999999999999999999999999999999988766556677889999999999999999999888
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCcccCcccC
Q 005751 593 DPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAVEEEDDVEET 653 (679)
Q Consensus 593 d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~lL~~~L~~~~~~~~~~~~~~~~~ 653 (679)
+++++.++++|+||||+|+|++||.++||++|++|+|+||.++|+++.++++++++...+.
T Consensus 452 d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~ 512 (531)
T PF00183_consen 452 DEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEEEDEEEEE 512 (531)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTTGGG-GGG
T ss_pred cchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCccccccccccc
Confidence 8888899999999999999999999999999999999999999999999887775444433
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=3.3e-129 Score=1111.23 Aligned_cols=541 Identities=46% Similarity=0.828 Sum_probs=500.4
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC--CCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~--~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|+|.+|.++++|+|+|||+|||+++|.++|++||.||++.|+++++.. .+..+|||||||||||||||++|+|+||+.
T Consensus 64 I~I~~d~~~~~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~ 143 (613)
T PRK05218 64 IRISFDKEARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSA 143 (613)
T ss_pred EEEEEcCCCCeEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCC
Confidence 677888888999999999999999999999999999999999988532 357899999999999999999999999997
Q ss_pred C--CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCC
Q 005751 79 D--DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPT 156 (679)
Q Consensus 79 ~--~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~ 156 (679)
+ ..++.|.+.|++.|++.+.+ ..++||+|+|||+++..+|++.++|+++|++||+|+++||++++.
T Consensus 144 ~~~~~~~~w~~~g~~~~~i~~~~---~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~--------- 211 (613)
T PRK05218 144 GPAAEAVRWESDGEGEYTIEEIE---KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE--------- 211 (613)
T ss_pred CCCCceEEEEEeCCceeEEeECC---CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc---------
Confidence 5 35899999999999999853 347999999999999999999999999999999999999999531
Q ss_pred CCCCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCC
Q 005751 157 DEDDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKD 236 (679)
Q Consensus 157 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~ 236 (679)
+|+++|..+|+|+++++++++++|..||+.++++
T Consensus 212 ----------------------------------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~ 245 (613)
T PRK05218 212 ----------------------------------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHD 245 (613)
T ss_pred ----------------------------------------------cceeecCCccceecCCccccHHHHHHHhhhhccc
Confidence 2678999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCCC
Q 005751 237 FSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLP 316 (679)
Q Consensus 237 ~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLp 316 (679)
| .+||+|+|++++|++.|+|+||||..+|+++|++ ..+.+|+||||||||+|+|++|||+||+||||||||+|||
T Consensus 246 ~--~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~~~---~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLp 320 (613)
T PRK05218 246 F--DDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFNR---DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLP 320 (613)
T ss_pred c--cCCcEEEEcccCCceEEEEEEEeCCCCccchhhh---cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCC
Confidence 9 8999999999999999999999999999998854 4578999999999999999999999999999999999999
Q ss_pred CccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccCH
Q 005751 317 LNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDA 396 (679)
Q Consensus 317 LNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~ 396 (679)
||||||+||+|++|++||+.|++|++++|.++|++ +|++|.+||++||.+||+||++|+
T Consensus 321 lnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la~~---------------------d~~~y~~f~~~~~~~lK~g~~~D~ 379 (613)
T PRK05218 321 LNVSREILQEDRVVKKIRKAITKKVLDELEKLAKN---------------------DREKYEKFWKEFGPVLKEGLYEDF 379 (613)
T ss_pred CccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHhhhhccH
Confidence 99999999999999999999999999999999999 899999999999999999999999
Q ss_pred HhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHh
Q 005751 397 ANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYL 476 (679)
Q Consensus 397 ~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L 476 (679)
+++++|++||||+||. .++++||++|++||+++|+.|||++++|++++.+|||+|.|+++|+|||++++|+|++|+++|
T Consensus 380 ~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l 458 (613)
T PRK05218 380 ANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYL 458 (613)
T ss_pred HHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHH
Confidence 9999999999999996 356999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEeeccccccCCC--Cc-ch--HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHH
Q 005751 477 MDYEDKKFQNVSKEGLKLGK--DT-KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANME 551 (679)
Q Consensus 477 ~~~~gk~f~sV~~~~~~l~~--~e-k~--~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Me 551 (679)
.+|+|++|++|+++++++.+ .+ +. +..++++++|++|++++|+++ |.+|++|.||+++||||+++++|++++|+
T Consensus 459 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~-v~~V~~s~rl~~~Pa~~v~~~~~~~~~me 537 (613)
T PRK05218 459 EEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDK-VKDVRLSHRLTDSPACLVADEGDMSTQME 537 (613)
T ss_pred HHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCc-ceEEEEeccCCCCCeEEEeCccchHHHHH
Confidence 99999999999999988754 21 11 344568999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005751 552 RIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYST 631 (679)
Q Consensus 552 rimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~l 631 (679)
|+|++|+ +.++..+++|||||+||||++|+... +++.++.+|+||||+|+|++|+.++||+.|++|+++|
T Consensus 538 r~~~~~~------~~~~~~~~~LeiNp~hplI~~L~~~~----d~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~l 607 (613)
T PRK05218 538 KLLKAAG------QEVPESKPILEINPNHPLVKKLADEA----DEAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNEL 607 (613)
T ss_pred HHHHhhh------hcccccceEEEEcCCCHHHHHHHhcc----ChHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 9999774 22334789999999999999998732 2334999999999999999999999999999999999
Q ss_pred HHhhcC
Q 005751 632 VKSSLN 637 (679)
Q Consensus 632 L~~~L~ 637 (679)
|..+++
T Consensus 608 l~~~~~ 613 (613)
T PRK05218 608 LLKLLA 613 (613)
T ss_pred HHHhhC
Confidence 988753
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=1.6e-122 Score=1048.45 Aligned_cols=524 Identities=22% Similarity=0.317 Sum_probs=461.4
Q ss_pred CEEEe-cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecC-
Q 005751 1 MQIKL-DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN- 78 (679)
Q Consensus 1 I~I~~-d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~- 78 (679)
|+|.+ |.++++|+|+|||+|||++++.++|++||+||++.|. +. ..+.++||||||||||||||||+|+|.||+.
T Consensus 53 I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~ 129 (601)
T PRK14083 53 IRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAK 129 (601)
T ss_pred EEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCC
Confidence 56777 7888999999999999999999999999999998764 22 2346799999999999999999999999998
Q ss_pred CCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCC
Q 005751 79 DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDE 158 (679)
Q Consensus 79 ~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~ 158 (679)
++.++.|.+.++|.|+|...+ +.+.++||+|+||++++..+|+++++++++|++||.||+|||++++.
T Consensus 130 ~~~~~~W~~~~~g~y~i~~~~-~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~----------- 197 (601)
T PRK14083 130 DGPAVEWRGKADGTYSVRKLE-TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE----------- 197 (601)
T ss_pred CCceEEEEECCCCceEEEeCC-CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc-----------
Confidence 467899999999999999753 34668999999999999999999999999999999999999999541
Q ss_pred CCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCC--HHHHHHHHHhhhCC
Q 005751 159 DDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVT--EEEYAKFYHSLVKD 236 (679)
Q Consensus 159 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it--~eey~~Fyk~~~~~ 236 (679)
.++||+++|||+|+|++|| ++||.+|||++++
T Consensus 198 ---------------------------------------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~- 231 (601)
T PRK14083 198 ---------------------------------------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG- 231 (601)
T ss_pred ---------------------------------------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC-
Confidence 1589999999999999999 9999999999887
Q ss_pred CCCCCCceeeeeeeccceeeEEEEE-ecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCC
Q 005751 237 FSDEKPLAWSHFNAEGDVEFKAVLF-VPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTL 315 (679)
Q Consensus 237 ~~~~~pL~~ih~~~eg~~~~~~lly-iP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DL 315 (679)
++||+|+|+++||++. +|+|| ||..+|++ .+++|+||||||||+|+|++|||+||+||||||||+||
T Consensus 232 ---~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~--------~~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DL 299 (601)
T PRK14083 232 ---FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA--------ARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDEL 299 (601)
T ss_pred ---CCchheeeecccchhh-eEEEEecCCCCCcc--------ccCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCC
Confidence 5899999999999875 78887 68888763 25799999999999999999999999999999999999
Q ss_pred CCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccC
Q 005751 316 PLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIED 395 (679)
Q Consensus 316 pLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD 395 (679)
|||||||+||+|++|++||+.|++||+++|+++|++ +|++|.+||++||.+||+||++|
T Consensus 300 pLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~~---------------------d~e~y~~f~~~~g~~lK~g~~~D 358 (601)
T PRK14083 300 RPTASREALYEDDALAAVREELGEAIRKWLIGLATT---------------------DPERLRRLLAVHHLGVKALASHD 358 (601)
T ss_pred CCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCC-CHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHH
Q 005751 396 AANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGA-NKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQ 474 (679)
Q Consensus 396 ~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~-s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~ 474 (679)
++|+++|++||||+||.+ .+||++|++|| +.|||+++. ++++++ +.|++||+|||+|++||||++++
T Consensus 359 ~~~~~~l~~lL~f~ss~~---~~sL~eY~~r~----~~IyY~~~~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l~ 426 (601)
T PRK14083 359 DELLRLILPWLPFETTDG---RMTLAEIRRRH----GVIRYTSSVDEFRQLA-----PIARAQGMGVINGGYTYDSELLE 426 (601)
T ss_pred HHHHHHHHHhceeecCCC---CcCHHHHHHhC----CeEEEEcCHHHHHHHH-----HHHHHCCCeEEEeCCccHHHHHH
Confidence 999999999999999985 59999999996 589999996 788776 79999999999999999999999
Q ss_pred Hhhh-cCCCceEeecccccc--CCCCcchHHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHH
Q 005751 475 YLMD-YEDKKFQNVSKEGLK--LGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANME 551 (679)
Q Consensus 475 ~L~~-~~gk~f~sV~~~~~~--l~~~ek~~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Me 551 (679)
+|.+ |+|++|++|+++++. +...+ ...++++++|++|++++|+++.|..|++|.||+++||||++++ +.+|+
T Consensus 427 ~l~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e---~~~~~ 501 (601)
T PRK14083 427 RLPRLRPGLTVERLDPAELTDRLEPLT--PEEELALRPFLAEAREVLAPFGCDVVIRHFEPADLPALYLHDR---AAQHS 501 (601)
T ss_pred HHHhhCCCCcEEEechhhhhhhccccc--hhhHHHHHHHHHHHHHHhCccceEEEEEcCCCCCCCEEEEeCc---hhHHH
Confidence 9998 999999999998763 43222 3345679999999999999973555578899999999999988 44666
Q ss_pred HHHHHhc-ccc--------hhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCC--C
Q 005751 552 RIMQSQT-LSD--------ASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLN--D 620 (679)
Q Consensus 552 rimk~q~-~~~--------~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ie--D 620 (679)
++|++.. ..+ ++.+.++..+++|||||+||||++|.++ .+.+.++++++||||+|+|++|++++ +
T Consensus 502 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~----~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e 577 (601)
T PRK14083 502 REREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL----GDPKLLSRAVEALYVQALLLGHRPLRPAE 577 (601)
T ss_pred HHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----cChHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 6665321 111 0111234578999999999999999774 34567999999999999999998888 9
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 005751 621 PKDFASRIYSTVKSSLNIS 639 (679)
Q Consensus 621 p~~f~~rln~lL~~~L~~~ 639 (679)
|+.|..++++||..+|+-.
T Consensus 578 ~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 578 MALLNRSLLGLLELALDAD 596 (601)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999988643
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.05 E-value=1.1e-10 Score=110.37 Aligned_cols=77 Identities=36% Similarity=0.623 Sum_probs=56.8
Q ss_pred CEEEecC---CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccc-eeeeeeeccEEEEEee
Q 005751 1 MQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVG-FYSVYLVADYVEVISK 76 (679)
Q Consensus 1 I~I~~d~---~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIG-f~S~FmVad~V~V~Tk 76 (679)
|.|.++. ....|+|.|||.||+.++|.. ++++|.|..... + ....+|+||+| .+|+|+++++|+|+|+
T Consensus 22 I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~~~--~-----~~~~~G~~G~G~k~A~~~~~~~~~v~S~ 93 (137)
T PF13589_consen 22 IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKKSE--K-----DRQSIGRFGIGLKLAIFSLGDRVEVISK 93 (137)
T ss_dssp EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHHHH--H-----HGGGGGGGTSGCGGGGGGTEEEEEEEEE
T ss_pred EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCCch--h-----hhhcCCCcceEHHHHHHHhcCEEEEEEE
Confidence 3455543 458999999999999999998 668988776521 1 24579999999 8899999999999999
Q ss_pred cCCCC-ceEE
Q 005751 77 HNDDK-QYVW 85 (679)
Q Consensus 77 ~~~~~-~~~w 85 (679)
..+.. .+.|
T Consensus 94 ~~~~~~~~~~ 103 (137)
T PF13589_consen 94 TNGESFTYTI 103 (137)
T ss_dssp STTSSSEEEE
T ss_pred ECCCCcEEEE
Confidence 98443 3443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=3.3e-08 Score=106.01 Aligned_cols=136 Identities=19% Similarity=0.314 Sum_probs=87.1
Q ss_pred CEEEecCCCC-EEEEEECCCcCCHHHHHHHHhHHhccchH-HHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeec-
Q 005751 1 MQIKLDKEKK-ILSIRDRGIGMTKEDLIKNLGTIAKSGTS-AFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH- 77 (679)
Q Consensus 1 I~I~~d~~~~-~L~I~DnGiGMt~~el~~~LgtIa~Sgt~-~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~- 77 (679)
|.|.+..++. .|+|.|||.||+.+++...+ .-..+++. .+ +.+ ......|.+|.|++|.+.+| +|+|+||.
T Consensus 42 I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~-~~~~tsk~~~~-~~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~ 115 (312)
T TIGR00585 42 IDVEIEEGGLKLIEVSDNGSGIDKEDLPLAC-ERHATSKIQSF-EDL---ERIETLGFRGEALASISSVS-RLTITTKTS 115 (312)
T ss_pred EEEEEEeCCEEEEEEEecCCCCCHHHHHHHh-hCCCcCCCCCh-hHh---hcccccCccchHHHHHHhhC-cEEEEEeec
Confidence 4555554444 49999999999999987543 33322221 12 111 23467899999999999999 89999997
Q ss_pred C-CCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEE-ec---cccccccc-----hHHHHHHHHHhc---CCCceeEEE
Q 005751 78 N-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH-LR---DEAGEYLE-----ESKLKELVKKYS---EFINFPIYI 144 (679)
Q Consensus 78 ~-~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~-lk---~~~~e~l~-----~~~~~~li~kys---~fi~~pI~i 144 (679)
. ++.++.|...|. .+.... ....++||+|++. |- +..+.|+. -..++.++.+|+ ..|.|.+..
T Consensus 116 ~~~~~~~~~~~~g~---~~~~~~-~~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~ 191 (312)
T TIGR00585 116 AADGLAWQALLEGG---MIEEIK-PAPRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTH 191 (312)
T ss_pred CCCcceEEEEECCC---cCcccc-cccCCCccEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 3 445788875443 222211 1234799999997 11 11122322 357889999998 566677776
Q ss_pred ee
Q 005751 145 WA 146 (679)
Q Consensus 145 ~~ 146 (679)
++
T Consensus 192 ~~ 193 (312)
T TIGR00585 192 DG 193 (312)
T ss_pred CC
Confidence 53
No 11
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.11 E-value=8.6e-06 Score=92.97 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=76.5
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc-----EEEEEeecCCCC-ce
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QY 83 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad-----~V~V~Tk~~~~~-~~ 83 (679)
..|+|.|||+||+.+++...|+....+ ++ |. ......|++|+|+.+|.+++. .|.|.|+..++. .+
T Consensus 75 ~~I~V~DNG~GIp~e~l~~iF~~f~~~-SK-~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~ 146 (535)
T PRK04184 75 YRVTVEDNGPGIPPEEIPKVFGKLLYG-SK-FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAY 146 (535)
T ss_pred EEEEEEcCCCCCCHHHHHHHhhhhhcc-cc-cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEE
Confidence 569999999999999999888665322 22 21 012356999999999998875 589999876544 44
Q ss_pred EEEeC-----CCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcC
Q 005751 84 VWESK-----ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSE 136 (679)
Q Consensus 84 ~w~s~-----g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~ 136 (679)
.+.-. ..|. .+..........+||+|.+.+..... .....+.++|++++-
T Consensus 147 ~~~l~id~~kn~g~-i~~~~~~~~~~~~GT~V~V~l~~~~~--~~~~~I~e~i~r~Al 201 (535)
T PRK04184 147 YFELKIDTKKNEPI-ILEREEVDWDRWHGTRVELEIEGDWY--RAKQRIYEYLKRTAI 201 (535)
T ss_pred EEEEEecccccCCe-eccccccCCCCCCCEEEEEEECCcCh--hhHHHHHHHHHHHHH
Confidence 43322 1121 11111111134689999999886542 236788999999875
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.09 E-value=7.5e-05 Score=87.43 Aligned_cols=126 Identities=20% Similarity=0.361 Sum_probs=78.4
Q ss_pred CEEEecCCC-CEEEEEECCCcCCHHHHHHHHhHHhccchHHHH--HHhhcCCCCCcccccccceeeeeeeccEEEEEeec
Q 005751 1 MQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV--EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH 77 (679)
Q Consensus 1 I~I~~d~~~-~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~--~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~ 77 (679)
|+|.+..++ ..|+|.|||.||+.+++...+..- .|+.+. +.+. ...-.|..|.|+.|.=-|+ +|+|.||.
T Consensus 42 I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~---~tsKi~~~~dl~---~~~t~GfrGeAL~sI~~vs-~l~i~s~~ 114 (617)
T PRK00095 42 IDIEIEEGGLKLIRVRDNGCGISKEDLALALARH---ATSKIASLDDLE---AIRTLGFRGEALPSIASVS-RLTLTSRT 114 (617)
T ss_pred EEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhcc---CCCCCCChhHhh---ccccCCcchhHHHhhhhce-EEEEEEec
Confidence 566664333 489999999999999998655322 222221 1111 2345789999999887787 89999998
Q ss_pred CC-CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEE-e---ccccccccc-----hHHHHHHHHHhcCC
Q 005751 78 ND-DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH-L---RDEAGEYLE-----ESKLKELVKKYSEF 137 (679)
Q Consensus 78 ~~-~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~-l---k~~~~e~l~-----~~~~~~li~kys~f 137 (679)
.+ +.+|.+...++..-.+.+ .....||+|++. | -+..+.|+. -..+.++|++|+-.
T Consensus 115 ~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 115 ADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred CCCCceEEEEecCCcCcceec----ccCCCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 64 345666544432212222 123689999996 1 122233433 33678888888754
No 13
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.04 E-value=1.5e-05 Score=90.14 Aligned_cols=116 Identities=24% Similarity=0.418 Sum_probs=75.3
Q ss_pred EEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccE-----EEEEeecCCCC-ceE
Q 005751 11 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDK-QYV 84 (679)
Q Consensus 11 ~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~-----V~V~Tk~~~~~-~~~ 84 (679)
.|+|.|||.||+.+++...|+....+ ++ |. .....-|++|+|+.++.++|.. |+|.|+..+.. ++.
T Consensus 66 ~I~V~DNG~GIp~edl~~iF~rf~~t-sK-~~------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~ 137 (488)
T TIGR01052 66 KVTVEDNGPGIPEEYIPKVFGKMLAG-SK-FH------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYK 137 (488)
T ss_pred EEEEEECCCCCCHHHHHhhhhhcccc-Cc-cc------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEE
Confidence 79999999999999999888765432 22 21 1223458999999999988864 99999987433 334
Q ss_pred EEeC-----CCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcC
Q 005751 85 WESK-----ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSE 136 (679)
Q Consensus 85 w~s~-----g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~ 136 (679)
.... ..|. -+...+.+....+||+|.+.+......+ ....+.+++++++-
T Consensus 138 ~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~v~f~~~~~r~-~k~~i~e~l~~~Al 192 (488)
T TIGR01052 138 MKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIELEFKGVSYRR-SKQGVYEYLRRTAV 192 (488)
T ss_pred EEEEecccccCCe-ecceeecCCCCCCceEEEEEECCceeec-cHHHHHHHHHHHHh
Confidence 4432 1232 1122111111137999999976543211 35789999999875
No 14
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=97.71 E-value=9.2e-05 Score=86.89 Aligned_cols=122 Identities=20% Similarity=0.318 Sum_probs=78.5
Q ss_pred EEEecCCCC--EEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc-----EEEEE
Q 005751 2 QIKLDKEKK--ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVI 74 (679)
Q Consensus 2 ~I~~d~~~~--~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad-----~V~V~ 74 (679)
.|.+...+. .|+|.|||+||+++++..-|...+.++ .|.. ...--|+.|+|+-++.+++. .|.|.
T Consensus 72 ~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tS--Kf~~------~~~srG~rG~GLglai~~sqlt~GgpI~I~ 143 (795)
T PRK14868 72 YVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGS--RFHA------REQSRGQQGIGISAAVLYSQLTSGKPAKIT 143 (795)
T ss_pred EEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccc--cccc------cccCCCCCceehHHHHHHHHHcCCCcEEEE
Confidence 344433333 699999999999999998886665332 2211 11345889999999988885 49999
Q ss_pred eecCCC-CceEEEe--CCCC---cEE-EEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcC
Q 005751 75 SKHNDD-KQYVWES--KADG---AFA-ISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSE 136 (679)
Q Consensus 75 Tk~~~~-~~~~w~s--~g~~---~y~-i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~ 136 (679)
|+..+. .++.|.- +++. ... ....+ ....+||+|.+.|.-. |--..++.++|++++-
T Consensus 144 S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~--~~~~~GT~IeV~Lf~N---~pAR~kI~eyl~r~Al 207 (795)
T PRK14868 144 SRTQGSEEAQYFELIIDTDTNEPEISVEETTT--WDRPHGTRIELEMEAN---MRARQQLHDYIKHTAV 207 (795)
T ss_pred eCCCCCCceeEEEEEEecCCCccceecceecc--cCCCCceEEEEEEEcc---CchhhhHHHHHHHHHh
Confidence 987643 3554443 2221 110 11111 2346899999997643 3446678899999874
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00033 Score=77.48 Aligned_cols=130 Identities=22% Similarity=0.361 Sum_probs=80.7
Q ss_pred CEEEec---CCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeee-----eccEEE
Q 005751 1 MQIKLD---KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYL-----VADYVE 72 (679)
Q Consensus 1 I~I~~d---~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~Fm-----Vad~V~ 72 (679)
|.|.++ .+--+++|+|||+|+..+.+=+-||++..++ + |- .....-||+|||.-.|-| -+.-|.
T Consensus 61 I~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygS-K-fh------~~~QsRGqqGiGis~avLysQmTtGkPv~ 132 (538)
T COG1389 61 IKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGS-K-FH------RNIQSRGQQGIGISAAVLYSQMTTGKPVR 132 (538)
T ss_pred eEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccc-h-hh------hhhhccccccccHHHHHHHHHhcCCCceE
Confidence 344443 3345899999999999999999999998543 3 31 123567999999766544 457899
Q ss_pred EEeecCC-CCceEEEe--CCC-CcEEE-Ee-CCCCCCCCCceEEEEEeccccccccchHH-HHHHHHHhcCCCce
Q 005751 73 VISKHND-DKQYVWES--KAD-GAFAI-SE-DTWNEPLGRGTEIRLHLRDEAGEYLEESK-LKELVKKYSEFINF 140 (679)
Q Consensus 73 V~Tk~~~-~~~~~w~s--~g~-~~y~i-~~-~~~~~~~~~GT~I~L~lk~~~~e~l~~~~-~~~li~kys~fi~~ 140 (679)
|+|+..+ +..|..+- +.. .+=.| .. ........+||+|.|+++... |-...+ +.++||+-+---|+
T Consensus 133 V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~~--~~~~~qgi~eYlkrtaiinPh 205 (538)
T COG1389 133 VISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGVW--YRAKRQGIYEYLKRTAIINPH 205 (538)
T ss_pred EEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEecccc--hhhcccCHHHHHHHHhhcCCc
Confidence 9998764 33333221 111 11111 11 011123469999999999875 333444 77888876544333
No 16
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.00062 Score=79.96 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=79.5
Q ss_pred CEEEecCCCCE-EEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKI-LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~-L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+..++.. |.|.|||+||+++||.-.+..=|-|=-+.+- .|. ...-.|=-|=-+.|.-.| -+++|+||..+
T Consensus 43 I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~-DL~---~I~TlGFRGEAL~SIasV-srlti~Srt~~ 117 (638)
T COG0323 43 IDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLE-DLF---RIRTLGFRGEALASIASV-SRLTITSRTAE 117 (638)
T ss_pred EEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchh-HHH---HhhccCccHHHHHHHHhh-heeEEEeecCC
Confidence 67777766654 9999999999999998776444433222221 111 111223333333443333 58999999663
Q ss_pred -CCceEEEeCCCCcE-EEEeCCCCCCCCCceEEEEE---ecccc-cccc-----chHHHHHHHHHhcC---CCceeEEEe
Q 005751 80 -DKQYVWESKADGAF-AISEDTWNEPLGRGTEIRLH---LRDEA-GEYL-----EESKLKELVKKYSE---FINFPIYIW 145 (679)
Q Consensus 80 -~~~~~w~s~g~~~y-~i~~~~~~~~~~~GT~I~L~---lk~~~-~e~l-----~~~~~~~li~kys~---fi~~pI~i~ 145 (679)
..++.|.-.|++.= ++.+. ..+.||+|.+. .+-.+ +.|+ +-..+.++|++|+- .|.|-+..+
T Consensus 118 ~~~~~~~~~~g~~~~~~~~p~----a~~~GTtVeV~dLF~NtPaRrKflks~~~E~~~i~~vv~r~ALahp~I~F~l~~~ 193 (638)
T COG0323 118 ASEGTQIYAEGGGMEVTVKPA----AHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHITELINRYALAHPDISFSLSHN 193 (638)
T ss_pred cCceEEEEecCCcccccccCC----CCCCCCEEEehHhhccChHHHHhhcccHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 45777777776443 44443 33569999985 12111 1232 34468889999984 345544443
No 17
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.01 E-value=0.001 Score=77.68 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=74.7
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHH-------HHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~-------~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|.++.+ +.|+|+|||.||..+... .-+.++..+|++ |- ...-.-.-|.-|+|.-|+=.++.+++|
T Consensus 25 I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k-fd----~~~~k~s~G~~G~Gls~vnalS~~l~v 98 (594)
T smart00433 25 IKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK-FD----DDAYKVSGGLHGVGASVVNALSTEFEV 98 (594)
T ss_pred EEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC-CC----CCCccccCCcccchHHHHHHhcCceEE
Confidence 56777665 499999999999853321 111233333322 21 001123568999999999999999999
Q ss_pred EeecCCCC-ceEEEeCCCC--cEEEEeCCCCCCCCCceEEEEEeccccccccc-----hHHHHHHHHHhcC
Q 005751 74 ISKHNDDK-QYVWESKADG--AFAISEDTWNEPLGRGTEIRLHLRDEAGEYLE-----ESKLKELVKKYSE 136 (679)
Q Consensus 74 ~Tk~~~~~-~~~w~s~g~~--~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~-----~~~~~~li~kys~ 136 (679)
+|+..+.. ...|+..|.- .-++.. .....||+|+. .++..-|.. ...+.+.++.++-
T Consensus 99 ~~~~~g~~~~~~~~~~G~~~~~~~~~~----~~~~~GT~V~F--~Pd~~~F~~~~~~~~~~i~~rl~~~A~ 163 (594)
T smart00433 99 EVARDGKEYKQSFSNNGKPLSEPKIIG----DTKKDGTKVTF--KPDLEIFGMTTDDDFELLKRRLRELAF 163 (594)
T ss_pred EEEeCCcEEEEEEeCCCeECccceecC----CCCCCCcEEEE--EECHHHhCCcccchHHHHHHHHHHHHh
Confidence 99987432 2334322321 112222 23478999995 455555544 3567777888753
No 18
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.98 E-value=0.0012 Score=77.54 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=79.5
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH--------HHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~--------~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|.++.+ +.|+|+|||.||..+.+.. .|+++- +|++ |-. ..-...-|.-|+|.-++=.++.+++
T Consensus 61 I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lh-agsK-f~~----~~yk~SgGl~GvGls~vNalS~~l~ 133 (631)
T PRK05559 61 IEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLH-AGGK-FSN----KAYKFSGGLHGVGVSVVNALSSRLE 133 (631)
T ss_pred EEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeecc-ccCc-cCC----ccccccCcccccchhhhhhheeeEE
Confidence 56777655 5899999999999988776 454432 2332 211 1112457999999999999999999
Q ss_pred EEeecCCCC-ceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEecccc--ccccchHHHHHHHHHhcC
Q 005751 73 VISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEA--GEYLEESKLKELVKKYSE 136 (679)
Q Consensus 73 V~Tk~~~~~-~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~--~e~l~~~~~~~li~kys~ 136 (679)
|.|++.+.. ...|+ .|...-.+..........+||+|+....... ..-++...+.+.+++++-
T Consensus 134 V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~ 199 (631)
T PRK05559 134 VEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTRVRFWPDPKIFDSPKFSPERLKERLRSKAF 199 (631)
T ss_pred EEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHHh
Confidence 999976432 23444 2221111211111111468999999765322 112456778888888864
No 19
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=96.88 E-value=0.00048 Score=61.68 Aligned_cols=79 Identities=28% Similarity=0.448 Sum_probs=53.4
Q ss_pred EEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCc
Q 005751 3 IKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ 82 (679)
Q Consensus 3 I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~ 82 (679)
+..+.+.-.|+|+|||.||+.+++...+.....+ .......+++|+||+.|..++++..
T Consensus 31 ~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~-----------~~~~~~~~g~GlGL~~~~~~~~~~~---------- 89 (111)
T PF02518_consen 31 IEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS-----------DKSETSISGHGLGLYIVKQIAERHG---------- 89 (111)
T ss_dssp EEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS-----------SSSSGGSSSSSHHHHHHHHHHHHTT----------
T ss_pred EEEecCeEEEEEEeccccccccccccchhhcccc-----------cccccccCCCChHHHHHHHHHHHCC----------
Confidence 3334456799999999999999988665222111 1134567789999999998887631
Q ss_pred eEEEeCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 83 YVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 83 ~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
|.+.+... ...||+|++++.
T Consensus 90 --------g~l~~~~~-----~~~gt~v~~~~p 109 (111)
T PF02518_consen 90 --------GELTIESS-----EGGGTTVTFTLP 109 (111)
T ss_dssp --------EEEEEEEE-----TTTEEEEEEEEE
T ss_pred --------CEEEEEEc-----CCCcEEEEEEEE
Confidence 23444442 257898888875
No 20
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=96.73 E-value=0.0032 Score=73.81 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=68.8
Q ss_pred EEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccE-----EEEEeecCCCCc--e
Q 005751 11 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDKQ--Y 83 (679)
Q Consensus 11 ~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~-----V~V~Tk~~~~~~--~ 83 (679)
.|+|.|||.||+.+++..-|+..- +|++ |.. ....-|++|+|+-++-+++.. |.|.|+..++.. +
T Consensus 74 ~I~V~DNG~GIp~e~l~~iFerF~-atSK-~~~------~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i 145 (659)
T PRK14867 74 KVAVEDNGPGIPPEFVPKVFGKML-AGSK-MHR------LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEM 145 (659)
T ss_pred EEEEEeeCeeCCHHHHhhhhcccc-ccCc-ccc------eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEE
Confidence 499999999999999998876642 2332 211 124558899999888766654 688887654432 2
Q ss_pred EEEeCC--CCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcC
Q 005751 84 VWESKA--DGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSE 136 (679)
Q Consensus 84 ~w~s~g--~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~ 136 (679)
.|..+- .+.--+.... .....+||+|.+.+++-...-. +..+.++|++++-
T Consensus 146 ~L~i~i~~n~G~I~~~~~-~~~~~~GT~Ie~~V~dLFynR~-E~~i~e~l~r~AL 198 (659)
T PRK14867 146 EIKMSVEKNEGDIVSHKV-REGFWRGTRVEGEFKEVTYNRR-EQGPFEYLRRISL 198 (659)
T ss_pred EEEEEecccCCeeccccc-CCCCCCCcEEEEEEeeceechh-hHHHHHHHHHHHH
Confidence 232221 2221111100 1123689999987765321111 3347888888774
No 21
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.61 E-value=0.0041 Score=73.22 Aligned_cols=134 Identities=18% Similarity=0.283 Sum_probs=78.6
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHH-------HHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~-------~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|+|.++.+ +.|+|+|||.||..+.-. .-+.++..+|++ |-+ ..-.-..|.-|+|.-|+=.++++++|
T Consensus 61 I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~k-fd~----~~yk~s~G~~G~Gls~vnalS~~~~v 134 (638)
T PRK05644 61 IEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGK-FGG----GGYKVSGGLHGVGVSVVNALSTWLEV 134 (638)
T ss_pred EEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccCc-cCC----CcccccCCccccchhhhhheeceEEE
Confidence 56777664 599999999999986211 012223333332 210 01112579999999999999999999
Q ss_pred EeecCCCCceEEEeCCCCcEEEEeC-CCCCCCCCceEEEEEeccccccc----cchHHHHHHHHHhcCCC-ceeEEEe
Q 005751 74 ISKHNDDKQYVWESKADGAFAISED-TWNEPLGRGTEIRLHLRDEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 145 (679)
Q Consensus 74 ~Tk~~~~~~~~w~s~g~~~y~i~~~-~~~~~~~~GT~I~L~lk~~~~e~----l~~~~~~~li~kys~fi-~~pI~i~ 145 (679)
+|++.+ ..|.....+ |. .+.+. +.+.....||+|+.. ++..-| ++...+.+.++.++-.. ..-|.++
T Consensus 135 ~t~r~g-~~~~~~~~~-G~-~~~~~~~~~~~~~~GT~I~F~--Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 135 EVKRDG-KIYYQEYER-GV-PVTPLEVIGETDETGTTVTFK--PDPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred EEEeCC-cEEEEEEEC-Ce-EccCccccCCcCCCCcEEEEE--ECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 999764 344333332 21 11111 112224689999964 333333 35577888888887432 3344444
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=96.58 E-value=0.0045 Score=72.72 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=82.4
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHH--------HHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~e--------l~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|.++.+ +.|+|+|||.||..++ +.-.|++. ..|++ |-. ..-.-..|.-|+|.-|+=.++.+++
T Consensus 54 I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~l-hagsK-~~~----~~~~~SgG~~GvGls~vnalS~~l~ 126 (625)
T TIGR01055 54 IMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTL-HAGGK-FSN----KNYHFSGGLHGVGISVVNALSKRVK 126 (625)
T ss_pred EEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhcc-cccCC-CCC----CcceecCCCcchhHHHHHHhcCeEE
Confidence 56777666 8999999999999987 55444333 33333 211 1112357889999999999999999
Q ss_pred EEeecCCCCceEEEeCCCCc-EEEEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHhcCCC-ceeEEEee
Q 005751 73 VISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKYSEFI-NFPIYIWA 146 (679)
Q Consensus 73 V~Tk~~~~~~~~w~s~g~~~-y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~kys~fi-~~pI~i~~ 146 (679)
|.|++.+.. |.+...++.. =.+...........||+|+........ .-.+...+...+++++-.. ..-|.+++
T Consensus 127 v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 127 IKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred EEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 999976433 4433332211 011111011123589999986554211 1234467888888876533 34455543
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=96.55 E-value=0.0035 Score=74.09 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=78.3
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHH-------HHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~-------~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|.++. ++.|+|+|||.||..+--. .-+.++..+|++ |-+ ..-....|.-|+|.-|+=.++.+++|
T Consensus 54 I~V~i~~-~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~k-f~~----~~~k~s~G~~G~gl~~inalS~~l~v 127 (654)
T TIGR01059 54 INVTIND-DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGK-FDK----DSYKVSGGLHGVGVSVVNALSEWLEV 127 (654)
T ss_pred EEEEEeC-CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCc-cCC----CcceecCCccchhHHHHHHhcCeEEE
Confidence 5677765 4579999999999986210 112233233333 211 11124579999999999999999999
Q ss_pred EeecCCCC-ceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEecccccccc----chHHHHHHHHHhcCCCceeEEE
Q 005751 74 ISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYL----EESKLKELVKKYSEFINFPIYI 144 (679)
Q Consensus 74 ~Tk~~~~~-~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l----~~~~~~~li~kys~fi~~pI~i 144 (679)
.|++.+.. ...|+ .|...-.+... +.....||+|+.+..+. -|. +...+.+.++.++- +.--|.+
T Consensus 128 ~~~~~g~~~~~~~~-~G~~~~~l~~~--~~~~~~GT~V~F~pdp~--~F~~~~~e~~~i~~rl~~~A~-l~pgl~i 197 (654)
T TIGR01059 128 TVFRDGKIYRQEFE-RGIPLGPLEVV--GETKKTGTTVRFWPDPE--IFETTEFDFDILAKRLRELAF-LNSGVKI 197 (654)
T ss_pred EEEECCeEEEEEEe-CCCcccCceec--cCCCCCCcEEEEEEChH--HhCCcccCHHHHHHHHHHhhc-cCCCeEE
Confidence 99986432 23343 22211111111 22347899999654443 343 56778888888884 3333444
No 24
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=96.49 E-value=0.0063 Score=72.61 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=80.8
Q ss_pred CEEEecCCCCEEEEEECCCcCCHH----------HHHHHHhHHhccchHHHHHHhhcCCCCC-cccccccceeeeeeecc
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKE----------DLIKNLGTIAKSGTSAFVEKMQTSGDLN-LIGQFGVGFYSVYLVAD 69 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~----------el~~~LgtIa~Sgt~~f~~~~~~~~~~~-~IGqFGIGf~S~FmVad 69 (679)
|+|+++.+ +.|+|+|||.||..+ |+. |+ ...+|++ |-. .... .-|.-|+|.-++=.+++
T Consensus 61 I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt-~lhAggK-fd~-----~~ykvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 61 ITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT-VLHAGGK-FDQ-----NSYKVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred EEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee-eecccCC-CCC-----CcccccCCccCccceEeehccC
Confidence 56777664 599999999999987 443 32 3344443 211 1112 56888999999999999
Q ss_pred EEEEEeecCCCCceEEEeCCC-CcEEEEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHhcCC-CceeEEEe
Q 005751 70 YVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKYSEF-INFPIYIW 145 (679)
Q Consensus 70 ~V~V~Tk~~~~~~~~w~s~g~-~~y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~kys~f-i~~pI~i~ 145 (679)
+++|+|++.+.. |......+ ..-.+... +....+||+|+........ .-++...|.+.++.++-. -..-|.++
T Consensus 131 ~l~v~v~r~gk~-~~q~f~~G~~~~~l~~~--g~~~~~GT~V~F~PD~~iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~ 207 (756)
T PRK14939 131 WLELTIRRDGKI-HEQEFEHGVPVAPLKVV--GETDKTGTEVRFWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLK 207 (756)
T ss_pred eEEEEEEeCCeE-EEEEEecCccccCcccc--CCcCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHhhcCCCCEEEEe
Confidence 999999976432 33332221 11112211 2234689999996554321 124556787888887632 23445555
Q ss_pred ec
Q 005751 146 AS 147 (679)
Q Consensus 146 ~~ 147 (679)
++
T Consensus 208 de 209 (756)
T PRK14939 208 DE 209 (756)
T ss_pred cc
Confidence 43
No 25
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=93.89 E-value=0.15 Score=60.19 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=79.5
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH-------HHhHHhccchHHHHHHhhcCCCC-CcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAKSGTSAFVEKMQTSGDL-NLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~-------~LgtIa~Sgt~~f~~~~~~~~~~-~~IGqFGIGf~S~FmVad~V~ 72 (679)
|+|++++ ++.++|+|||-||..+.-.. .+.|...+|.+ |- +... -.-|.-|+|.-.+=.++++++
T Consensus 58 I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgk-fd-----~~~ykvSGGlhGvG~svvNAlS~~~~ 130 (637)
T TIGR01058 58 ITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGK-FD-----QGGYKTAGGLHGVGASVVNALSSWLE 130 (637)
T ss_pred EEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCc-CC-----CCcccccCCcccccccccceeeceEE
Confidence 5677774 56999999999997632110 01122223322 20 1111 245889999999999999999
Q ss_pred EEeecCCCC-ceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHhcCCC-ceeEEEee
Q 005751 73 VISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKYSEFI-NFPIYIWA 146 (679)
Q Consensus 73 V~Tk~~~~~-~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~kys~fi-~~pI~i~~ 146 (679)
|.+++.+.. ...|+..|...-.+... +....+||+|+.+...... .-++.+.|++-++..+-.. ..-|++++
T Consensus 131 V~v~r~gk~~~q~f~~Gg~~~~~l~~~--~~~~~~GT~V~F~PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 131 VTVKRDGQIYQQRFENGGKIVQSLKKI--GTTKKTGTLVHFHPDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred EEEEECCEEEEEEEecCCcCcCCcccc--cCCCCCceEEEEEeCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 999876422 23454322211111111 2234689999998876532 1245667777777766433 35666654
No 26
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.0018 Score=73.86 Aligned_cols=223 Identities=10% Similarity=-0.036 Sum_probs=153.5
Q ss_pred hhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHH
Q 005751 374 KGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLER 453 (679)
Q Consensus 374 ~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~ 453 (679)
...+..+|+.|...+..++-+.-......-... +...-.-....|.+++ .+.+++-..++....+.-.+.....-.+
T Consensus 376 ~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~~ 452 (656)
T KOG0019|consen 376 LAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQLA 452 (656)
T ss_pred HhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhhh
Confidence 336777888887777777666654444443333 2221111234566666 4556777788888888777888888888
Q ss_pred HHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCc----ch-HHhHHHHHHHHHHHHhhcCCCCccEEEE
Q 005751 454 LKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT----KD-KELKESFKELTKWWKGALASENVDDVKV 528 (679)
Q Consensus 454 ~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~e----k~-~~~~~e~~~L~~~lK~~L~d~~V~~V~v 528 (679)
-.+-++|++..-++.+.||++.+.+|....++......+...+.+ .+ ++.+.+.......++... + .+
T Consensus 453 ~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lc-k------~m 525 (656)
T KOG0019|consen 453 ESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELC-K------WM 525 (656)
T ss_pred hcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHH-H------HH
Confidence 889999999999999999999999999988888877765533222 11 233333333222222211 1 13
Q ss_pred eecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 005751 529 SNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQ 608 (679)
Q Consensus 529 S~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd 608 (679)
..+|.+ +|+-|+..+.++.++..|+..+-...+++...|.++.+.+.||-|-+.- .+.++-||+.+.++.+-++...
T Consensus 526 K~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpivk~L~~~~~~ 602 (656)
T KOG0019|consen 526 KEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPLVKTLRQLRES 602 (656)
T ss_pred HHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChHHHHHHHHHhc
Confidence 357776 9999998999999999999977655666667788999999999998876 3445668999988888766554
Q ss_pred H
Q 005751 609 T 609 (679)
Q Consensus 609 ~ 609 (679)
.
T Consensus 603 d 603 (656)
T KOG0019|consen 603 D 603 (656)
T ss_pred C
Confidence 3
No 27
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=92.42 E-value=0.43 Score=55.61 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=83.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH-------HHhHHhccchHHHHHHhhcCCCCC-cccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAKSGTSAFVEKMQTSGDLN-LIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~-------~LgtIa~Sgt~~f~~~~~~~~~~~-~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|+++ .++.|+|.|||-||.-+.=-. -.-|+...|.+ |- +.... .=|--|||.=-|=.++++++
T Consensus 60 I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGK-Fd-----~~~YkvSGGLHGVG~SVVNALS~~l~ 132 (635)
T COG0187 60 IDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGK-FD-----NDSYKVSGGLHGVGVSVVNALSTWLE 132 (635)
T ss_pred EEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcc-cC-----CCccEeecCCCccceEEEecccceEE
Confidence 566666 678999999999998765111 11223333333 21 11222 34788999988999999999
Q ss_pred EEeecCCCC-ceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHhcCCCc-eeEEEeec
Q 005751 73 VISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKYSEFIN-FPIYIWAS 147 (679)
Q Consensus 73 V~Tk~~~~~-~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~kys~fi~-~pI~i~~~ 147 (679)
|++++.+.. .-.|+- |...-.+...........||+|+.+..+... .=.+...|++-++.++-..+ .-|.++..
T Consensus 133 v~v~r~gk~y~q~f~~-G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 133 VEVKRDGKIYRQRFER-GVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred EEEEECCEEEEEEEeC-CCcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEec
Confidence 999987422 223432 2221122221112344679999988776531 12456777777777765443 66777654
No 28
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=92.31 E-value=0.17 Score=43.09 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=35.0
Q ss_pred CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEE
Q 005751 8 EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 71 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V 71 (679)
..-.|.|.|+|.||+...+...+.....+ . ......+++|+|++.|--++++.
T Consensus 36 ~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~----------~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 36 DHLEITVEDNGPGIPPEDLEKIFEPFFRT-D----------GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred CEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C----------CCCCCCCcccccHHHHHHHHHHc
Confidence 34578899999999998877655322111 0 12245677999999987666553
No 29
>PLN03237 DNA topoisomerase 2; Provisional
Probab=92.09 E-value=0.38 Score=61.08 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=82.5
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHH--------HhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKN--------LGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~--------LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|+++.+++.|+|+|||-|+.-+. +.. +.|...+|++ |-. +.-.-.-|+-|+|.-.|=..+.+++
T Consensus 102 I~V~I~~~~gsIsV~DnGRGIPV~i-H~~eg~~~pElIft~LhAGgk-Fdd----~~yKvSGGlhGVGasvvNaLS~~f~ 175 (1465)
T PLN03237 102 LRVVIDVEQNLISVYNNGDGVPVEI-HQEEGVYVPEMIFGHLLTSSN-YDD----NEKKTTGGRNGYGAKLTNIFSTEFV 175 (1465)
T ss_pred EEEEEEcCCCEEEEEecCccccCCC-CCCCCCccceEEEEeeecccc-CCC----CcceeeccccccCccccccccCeeE
Confidence 6788888889999999999887642 211 1122233332 210 1112356999999999999999999
Q ss_pred EEeecC-CCCce--EEEeC-CCCcE-EEEeCCCCCCCCCceEEEEEecccccc--ccchHHHHHHHHHh---cCCCc--e
Q 005751 73 VISKHN-DDKQY--VWESK-ADGAF-AISEDTWNEPLGRGTEIRLHLRDEAGE--YLEESKLKELVKKY---SEFIN--F 140 (679)
Q Consensus 73 V~Tk~~-~~~~~--~w~s~-g~~~y-~i~~~~~~~~~~~GT~I~L~lk~~~~e--~l~~~~~~~li~ky---s~fi~--~ 140 (679)
|+++.. .+..| .|..+ |.-.- .+.. ......||+|+......... -++.+.+..+.++. +.|++ .
T Consensus 176 Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGl 252 (1465)
T PLN03237 176 IETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWTKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTV 252 (1465)
T ss_pred EEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCceEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCc
Confidence 999832 12333 57632 22111 1221 11236899998887654321 24566665554554 44663 7
Q ss_pred eEEEeecc
Q 005751 141 PIYIWASK 148 (679)
Q Consensus 141 pI~i~~~~ 148 (679)
-|++++++
T Consensus 253 kI~LndeR 260 (1465)
T PLN03237 253 KVELNGKR 260 (1465)
T ss_pred EEEEEecC
Confidence 78887654
No 30
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=91.96 E-value=0.3 Score=57.41 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=75.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH--H--H------hHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK--N--L------GTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADY 70 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~--~--L------gtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~ 70 (679)
|.|.++ ++.++|+|||-||.-+.-.+ . . -|...+|.+ |-. .-.-.-|.-|||.=.+=.++.+
T Consensus 72 I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgk-Fd~-----~ykvSGGlhGVG~svvNaLS~~ 143 (602)
T PHA02569 72 IDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSN-FDD-----TNRVTGGMNGVGSSLTNFFSVL 143 (602)
T ss_pred EEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccc-cCC-----cceeeCCcCCccceeeeccchh
Confidence 456666 78999999999998644311 1 1 133334443 311 1122468999999888888999
Q ss_pred EEEEeecCCCC-ceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccc--cc---hHHHHHHHHHhcCCCc--eeE
Q 005751 71 VEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY--LE---ESKLKELVKKYSEFIN--FPI 142 (679)
Q Consensus 71 V~V~Tk~~~~~-~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~--l~---~~~~~~li~kys~fi~--~pI 142 (679)
++|+++..+.. ...|.. |-..-.+ +.+....+||+|+.........- ++ .+.+.+-++..+ |+. .-|
T Consensus 144 ~~V~v~~~~~~~~q~f~~-G~~~~~~---~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I 218 (602)
T PHA02569 144 FIGETCDGKNEVTVNCSN-GAENISW---STKPGKGKGTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKF 218 (602)
T ss_pred hheEEEcCCEEEEEEecC-CcccCCc---ccCCCCCCccEEEEEECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEE
Confidence 99988654322 234432 2211111 11233468999999887653211 22 233444444443 443 566
Q ss_pred EEeec
Q 005751 143 YIWAS 147 (679)
Q Consensus 143 ~i~~~ 147 (679)
+++++
T Consensus 219 ~l~de 223 (602)
T PHA02569 219 TFNGK 223 (602)
T ss_pred EEEec
Confidence 66653
No 31
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=91.79 E-value=0.15 Score=56.67 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEeCC
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 89 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s~g 89 (679)
-.|+|.|||+||+.+++.+-+...-+. .+......|.+|+|++-|--+++. .
T Consensus 385 ~~i~V~D~G~Gi~~e~~~~lf~~~~~~----------~~~~~~~~~g~GlGL~iv~~i~~~-------~----------- 436 (466)
T PRK10549 385 LRLTFADSAPGVSDEQLQKLFERFYRT----------EGSRNRASGGSGLGLAICLNIVEA-------H----------- 436 (466)
T ss_pred EEEEEEecCCCcCHHHHHHhccCcccC----------CCCcCCCCCCCcHHHHHHHHHHHH-------c-----------
Confidence 467889999999998876554221110 011123456789999876544433 1
Q ss_pred CCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 90 DGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 90 ~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|.+.+... ...||+++|.+.
T Consensus 437 ~G~l~~~s~-----~~~G~~~~i~lP 457 (466)
T PRK10549 437 NGRIIAAHS-----PFGGVSITVELP 457 (466)
T ss_pred CCEEEEEEC-----CCCeEEEEEEcc
Confidence 134555432 245888888764
No 32
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=91.62 E-value=0.19 Score=53.92 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=45.8
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEE
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVW 85 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w 85 (679)
+.+.-.|+|+|||+||+++++..-+ ..+.+ . + .--|.+|+|++-|--+++. .
T Consensus 276 ~~~~~~i~V~D~G~Gi~~~~~~~if----~~f~~--------~-~-~~~~g~GlGL~i~~~i~~~-------~------- 327 (356)
T PRK10755 276 EDGGAVLAVEDEGPGIDESKCGELS----KAFVR--------M-D-SRYGGIGLGLSIVSRITQL-------H------- 327 (356)
T ss_pred cCCEEEEEEEECCCCCCHHHHHHhC----CCeEe--------C-C-CCCCCcCHHHHHHHHHHHH-------C-------
Confidence 3344579999999999999886443 21111 0 0 1125689999877555442 1
Q ss_pred EeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 86 ESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 86 ~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|.+++...+ ...||+|++.+..
T Consensus 328 ----gg~i~i~s~~----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 328 ----HGQFFLQNRQ----ERSGTRAWVWLPK 350 (356)
T ss_pred ----CCEEEEEECC----CCCeEEEEEEecC
Confidence 2456665421 1269999998853
No 33
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=91.55 E-value=0.24 Score=57.86 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=62.4
Q ss_pred CEEEecC-CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccce----eeeeeeccEEEEEe
Q 005751 1 MQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGF----YSVYLVADYVEVIS 75 (679)
Q Consensus 1 I~I~~d~-~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf----~S~FmVad~V~V~T 75 (679)
|+|.++. +-..|.|.|||.|.+.-+..- .-.+..|+.. ..+ .++..-|..|| +|+.-.=-.|.|+|
T Consensus 40 I~I~~kdyG~d~IEV~DNG~GI~~~n~~~---l~lkh~TSKi-~~f-----~Dl~~l~T~GFRGEALSsLCa~~dv~I~T 110 (672)
T KOG1978|consen 40 IDIKVKDYGSDSIEVSDNGSGISATDFEG---LALKHTTSKI-VSF-----ADLAVLFTLGFRGEALSSLCALGDVMIST 110 (672)
T ss_pred eeEecCCCCcceEEEecCCCCCCccchhh---hhhhhhhhcc-cch-----hhhhhhhhhhhHHHHHHhhhhccceEEEE
Confidence 4555543 347999999999999888663 3334444321 111 13444455565 35543335677888
Q ss_pred ecCC-CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEE
Q 005751 76 KHND-DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH 113 (679)
Q Consensus 76 k~~~-~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~ 113 (679)
++.+ .-+..|.-+.+|..+ ...+ -..++||+|++.
T Consensus 111 rt~~~~vgt~l~~Dh~G~I~-~k~~--~ar~~GTTV~v~ 146 (672)
T KOG1978|consen 111 RSHSAKVGTRLVYDHDGHII-QKKP--VARGRGTTVMVR 146 (672)
T ss_pred eeccCccceeEEEccCCcee-eecc--ccCCCCCEEEHh
Confidence 8863 347888888887754 2222 245799999975
No 34
>PLN03128 DNA topoisomerase 2; Provisional
Probab=91.38 E-value=0.39 Score=60.10 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=77.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH-------HHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~-------~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|+++++++.|+|+|||-|+.-+.-.. -..|...+|.+ |-. +.-.-.-|+-|||.=.|=..+.+++|
T Consensus 77 I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgk-Fdd----~~ykvSGGlhGvGasvvNaLS~~f~V 151 (1135)
T PLN03128 77 LKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSN-FDD----NEKKTTGGRNGYGAKLANIFSTEFTV 151 (1135)
T ss_pred EEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccc-cCC----ccceeeccccCCCCeEEEeecCeEEE
Confidence 6788888889999999999987642110 01122233333 311 11123568999999999999999999
Q ss_pred EeecC-CCCc--eEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHH---hcCCCc--eeEE
Q 005751 74 ISKHN-DDKQ--YVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKK---YSEFIN--FPIY 143 (679)
Q Consensus 74 ~Tk~~-~~~~--~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~k---ys~fi~--~pI~ 143 (679)
+++.. ++.. -.|.. |-..-............+||+|+........ .-++.+.+..+.++ -+.|++ .-|+
T Consensus 152 ev~d~r~gk~y~q~f~~-G~~~~~~p~i~~~~~~~~GT~ItF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~ 230 (1135)
T PLN03128 152 ETADGNRGKKYKQVFTN-NMSVKSEPKITSCKASENWTKITFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVE 230 (1135)
T ss_pred EEEECCCCeEEEEEeCC-CcccCCCceeccCCCCCCceEEEEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 99832 2222 34542 2111111111111123589999988765431 11344443333333 344553 5566
Q ss_pred Eeec
Q 005751 144 IWAS 147 (679)
Q Consensus 144 i~~~ 147 (679)
++++
T Consensus 231 Lnde 234 (1135)
T PLN03128 231 LNGK 234 (1135)
T ss_pred EecC
Confidence 6654
No 35
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=91.11 E-value=0.21 Score=55.12 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=45.0
Q ss_pred ecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceE
Q 005751 5 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYV 84 (679)
Q Consensus 5 ~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~ 84 (679)
.+.+.-+|+|.|||+||+.+++...+.. +.+ . . ......-|.+|+|++-|=-+++.
T Consensus 379 ~~~~~~~i~V~D~G~Gi~~~~~~~if~~----~~~----~-~-~~~~~~~~g~GlGL~iv~~~v~~-------------- 434 (461)
T PRK09470 379 VDKDGLTITVDDDGPGVPEEEREQIFRP----FYR----V-D-EARDRESGGTGLGLAIVENAIQQ-------------- 434 (461)
T ss_pred EECCEEEEEEEECCCCCCHHHHHHhcCC----Ccc----C-C-cccCCCCCCcchhHHHHHHHHHH--------------
Confidence 3444457899999999999987655521 111 0 0 01123446789999765222220
Q ss_pred EEeCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 85 WESKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 85 w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
-.|...+... ...||+++|++.
T Consensus 435 ----~~G~l~~~s~-----~~~Gt~~~i~lp 456 (461)
T PRK09470 435 ----HRGWVKAEDS-----PLGGLRLTIWLP 456 (461)
T ss_pred ----CCCEEEEEEC-----CCCeEEEEEEee
Confidence 1245555542 246999988874
No 36
>PRK10604 sensor protein RstB; Provisional
Probab=90.69 E-value=0.22 Score=55.58 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=44.4
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEE
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVW 85 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w 85 (679)
+.+.-.|+|.|||.||+.+++.+-+..-.+. . .+...--|.+|+|++-|--+++. .
T Consensus 346 ~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~---------~-~~~~~~~~g~GLGL~ivk~i~~~-------~------- 401 (433)
T PRK10604 346 DGNQACLIVEDDGPGIPPEERERVFEPFVRL---------D-PSRDRATGGCGLGLAIVHSIALA-------M------- 401 (433)
T ss_pred ECCEEEEEEEEcCCCCCHHHHhhcCCCCccC---------C-CCCCCCCCCccchHHHHHHHHHH-------C-------
Confidence 3344578999999999999877544211110 0 11112346789999865433331 1
Q ss_pred EeCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 86 ESKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 86 ~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|++++... ...||++++.+-
T Consensus 402 ----gG~i~v~s~-----~~~G~~f~i~lP 422 (433)
T PRK10604 402 ----GGSVNCDES-----ELGGARFSFSWP 422 (433)
T ss_pred ----CCEEEEEec-----CCCeeEEEEEEe
Confidence 244555542 246888888774
No 37
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=90.49 E-value=0.33 Score=53.60 Aligned_cols=75 Identities=24% Similarity=0.208 Sum_probs=44.5
Q ss_pred CCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEE
Q 005751 7 KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWE 86 (679)
Q Consensus 7 ~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~ 86 (679)
.+.-.|+|+|||+||+.+++...+. ...+.. ....--+.-|+|++.|.-.+.. .
T Consensus 398 ~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~----------~~~~~~~~~GlGL~i~~~~~~~-------~-------- 451 (475)
T PRK11100 398 GEQVALSVEDQGPGIPDYALPRIFE-RFYSLP----------RPANGRKSTGLGLAFVREVARL-------H-------- 451 (475)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHH-HHccCC----------CCCCCCCCcchhHHHHHHHHHH-------C--------
Confidence 3345699999999999988775442 111100 0011224569999887544322 1
Q ss_pred eCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 87 SKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 87 s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|.+.+... .+.||+|++.+.
T Consensus 452 ---~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 452 ---GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred ---CCEEEEEEc-----CCCeEEEEEEee
Confidence 245666542 246999998874
No 38
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=89.41 E-value=0.81 Score=58.25 Aligned_cols=137 Identities=13% Similarity=0.211 Sum_probs=79.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH--------HHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~--------~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|+++++.+.|+|+|||-|+.-+.-.. -|+++ .+|.+ |-. +...-.-|+-|+|.-.|=..+.+++
T Consensus 85 I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L-~aGgk-fdd----~~yKvSGGlhGVGasvvNalS~~f~ 158 (1388)
T PTZ00108 85 IKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHL-LTSSN-YDD----TEKRVTGGRNGFGAKLTNIFSTKFT 158 (1388)
T ss_pred EEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEe-ecccc-CCC----CceeeecccccCCccccccccceEE
Confidence 6788888888999999999887642110 02222 23332 210 1112357999999999999999999
Q ss_pred EEeecCC-CCc--eEEEeCC---CCcEEEEeCCCCCCCCCceEEEEEecccccc--ccchHH---HHHHHHHhcCCC-ce
Q 005751 73 VISKHND-DKQ--YVWESKA---DGAFAISEDTWNEPLGRGTEIRLHLRDEAGE--YLEESK---LKELVKKYSEFI-NF 140 (679)
Q Consensus 73 V~Tk~~~-~~~--~~w~s~g---~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e--~l~~~~---~~~li~kys~fi-~~ 140 (679)
|+++... +.. -.|.... ... .|... .....||+|+......... -++.+. |..-++..+-.. ..
T Consensus 159 Vev~r~~~gk~y~q~f~~Gm~~~~~p-~i~~~---~~~~~GT~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GL 234 (1388)
T PTZ00108 159 VECVDSKSGKKFKMTWTDNMSKKSEP-RITSY---DGKKDYTKVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKL 234 (1388)
T ss_pred EEEEECCCCCEEEEEecCCCcCCCCC-ccCCC---CCCCCceEEEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCc
Confidence 9999861 232 3565321 111 22211 1115899999887764322 234454 434344443322 36
Q ss_pred eEEEeec
Q 005751 141 PIYIWAS 147 (679)
Q Consensus 141 pI~i~~~ 147 (679)
-|+++++
T Consensus 235 kI~lnde 241 (1388)
T PTZ00108 235 KVYLNGE 241 (1388)
T ss_pred EEEEeCc
Confidence 6677654
No 39
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=88.60 E-value=0.64 Score=38.80 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=36.6
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc----EEEEEe
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD----YVEVIS 75 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad----~V~V~T 75 (679)
-.+.|.|+|.||+...+...+...+. .......+.+|+|++.|-.+++ .+.+.+
T Consensus 34 ~~v~i~d~g~g~~~~~~~~~~~~~~~------------~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~ 91 (103)
T cd00075 34 LEIRVEDNGPGIPEEDLERIFERFSD------------GSRSRKGGGTGLGLSIVKKLVELHGGRIEVES 91 (103)
T ss_pred EEEEEEeCCCCCCHHHHHHHhhhhhc------------CCCCCCCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 46888999999999988766543310 0122345689999998877776 555544
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=88.35 E-value=0.52 Score=51.80 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=30.3
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD 69 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad 69 (679)
-.|+|.|||+||+.+++..-| ....+ .....-.+..|+|++-|.-+++
T Consensus 306 v~i~V~D~G~GI~~~~~~~iF----~pf~~--------~~~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 306 VQVSICDTGPGIPEEEQERIF----EDRVR--------LPRDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred EEEEEEEcCCCCCHHHHHHHc----cCcee--------CCCCCCCCcccccHHHHHHHHH
Confidence 368999999999999876443 11111 0011223569999988766553
No 41
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=88.33 E-value=0.64 Score=56.92 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=31.9
Q ss_pred ecCCC-CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeee
Q 005751 5 LDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLV 67 (679)
Q Consensus 5 ~d~~~-~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmV 67 (679)
...+. -.|.|.|||+||+.+++..-|-. |.. ......-|..|+|++-|--+
T Consensus 606 ~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~----~~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 606 LNDDSSLLFEVEDTGCGIAEEEQATLFDA--------FTQ----ADGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred EcCCCeEEEEEEeCCCCCCHHHHHHHHhh--------hhc----cCCCCCCCCccHHHHHHHHH
Confidence 33444 57999999999999987655421 211 11122346789999866433
No 42
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=87.92 E-value=0.51 Score=51.86 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=46.4
Q ss_pred EEEecCCC--CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 2 QIKLDKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 2 ~I~~d~~~--~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
.|.+..++ -.|+|.|||.||+...+...+-..-++.. .....-+..|+|++-|--++++ .
T Consensus 376 ~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~----------~~~~~~~g~GlGL~i~~~~~~~-------~- 437 (457)
T TIGR01386 376 TVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP----------ARSNSGEGTGLGLAIVRSIMEA-------H- 437 (457)
T ss_pred EEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc----------ccCCCCCCccccHHHHHHHHHH-------C-
Confidence 44443333 37899999999999887754422111110 1112345689999876443322 1
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEe
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHL 114 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~l 114 (679)
+|++++.. + +.||+|+|.+
T Consensus 438 ----------~G~~~~~~-~-----~~G~~~~~~~ 456 (457)
T TIGR01386 438 ----------GGRASAES-P-----DGKTRFILRF 456 (457)
T ss_pred ----------CCEEEEEe-C-----CCceEEEEec
Confidence 35666654 2 4699998875
No 43
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=87.82 E-value=1.6 Score=53.27 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=79.8
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH-------HHhHHhccchHHHHHHh----------------------------
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAKSGTSAFVEKM---------------------------- 45 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~-------~LgtIa~Sgt~~f~~~~---------------------------- 45 (679)
|.|++++ ++.++|+|||-||.-+.-.. -..|+..+|.+ |-...
T Consensus 153 I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~ 230 (903)
T PTZ00109 153 ITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKG 230 (903)
T ss_pred EEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccCcc-ccCcccccccccccccccccccccccccccccc
Confidence 5677765 57999999999987643211 11244455543 32110
Q ss_pred -hc------CCCC-CcccccccceeeeeeeccEEEEEeecCCCC-ceEEEeCCCCcEEEEeCCCCCC-CCCceEEEEEec
Q 005751 46 -QT------SGDL-NLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEP-LGRGTEIRLHLR 115 (679)
Q Consensus 46 -~~------~~~~-~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~-~~~w~s~g~~~y~i~~~~~~~~-~~~GT~I~L~lk 115 (679)
++ .... -.-|.-|||.-.+=.++.+++|.+++.+.. ...|+ .|...-.+... +.. ..+||+|+....
T Consensus 231 ~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK~y~q~F~-rG~~v~pLkvi--g~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 231 PKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGKIYSIELS-KGKVTKPLSVF--SCPLKKRGTTIHFLPD 307 (903)
T ss_pred cccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCEEEEEEeC-CCcccCCcccc--CCcCCCCceEEEEEeC
Confidence 00 0112 256889999999999999999999886431 22342 22211111111 122 358999998887
Q ss_pred -cccc-c-c--------------cchHHHHHHHHHhcCCC-ceeEEEee
Q 005751 116 -DEAG-E-Y--------------LEESKLKELVKKYSEFI-NFPIYIWA 146 (679)
Q Consensus 116 -~~~~-e-~--------------l~~~~~~~li~kys~fi-~~pI~i~~ 146 (679)
+... . . ++.+.|++-++..+-.. ..-|.+++
T Consensus 308 ~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~L~D 356 (903)
T PTZ00109 308 YKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTFYLVD 356 (903)
T ss_pred cchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 5421 1 1 24566777677766332 34556654
No 44
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=87.76 E-value=0.38 Score=57.11 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=45.5
Q ss_pred CEEEecC--CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDK--EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~--~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|.|.+.. +.-.|+|.|||.||+++.+.+.+..-..+ .. . +..|+|++.|--+++. .
T Consensus 601 I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~------------~~-~--~G~GLGL~i~~~iv~~-------~ 658 (679)
T TIGR02916 601 VAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDT------------TK-G--AGMGIGVYECRQYVEE-------I 658 (679)
T ss_pred EEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCC------------CC-C--CCcchhHHHHHHHHHH-------c
Confidence 3455543 34568899999999999866554221110 01 1 5689999987544322 1
Q ss_pred CCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEe
Q 005751 79 DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHL 114 (679)
Q Consensus 79 ~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~l 114 (679)
+|++++... .+.||++++.+
T Consensus 659 -----------gG~i~v~s~-----~g~Gt~f~i~L 678 (679)
T TIGR02916 659 -----------GGRIEVEST-----PGQGTIFTLVL 678 (679)
T ss_pred -----------CCEEEEEec-----CCCceEEEEEe
Confidence 245555542 24688888875
No 45
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=87.65 E-value=0.62 Score=56.62 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=45.7
Q ss_pred CEEEecC--CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDK--EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~--~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|+|.+.. +.-.|+|+|||+||+.+++.+-+ . .|.. . + .-.|..|+|++-|-.+++. .
T Consensus 534 I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if----~----~f~~----~-~-~~~~g~GLGL~i~~~~~~~-------~ 592 (921)
T PRK15347 534 IRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF----T----PFYQ----A-D-THSQGTGLGLTIASSLAKM-------M 592 (921)
T ss_pred EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh----c----Cccc----C-C-CCCCCCchHHHHHHHHHHH-------c
Confidence 3444433 33468899999999999876444 1 1211 1 1 1236689999755333221 1
Q ss_pred CCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 79 DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 79 ~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|..++... .+.||++++.|.
T Consensus 593 -----------gG~i~i~s~-----~~~Gt~f~i~lp 613 (921)
T PRK15347 593 -----------GGELTLFST-----PGVGSCFSLVLP 613 (921)
T ss_pred -----------CCEEEEEec-----CCCceEEEEEEE
Confidence 244555432 357999998875
No 46
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=87.61 E-value=0.55 Score=51.69 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=42.0
Q ss_pred CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEe
Q 005751 8 EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWES 87 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s 87 (679)
+.-.|+|.|||+||+.+.+..-| ..... . .....+.=|+|++-|=.+++. .
T Consensus 422 ~~~~~~V~D~G~Gi~~~~~~~iF----~~f~~--------~-~~~~~~G~GlGL~i~~~iv~~-------~--------- 472 (494)
T TIGR02938 422 DLIVVSILDSGPGIPQDLRYKVF----EPFFT--------T-KGGSRKHIGMGLSVAQEIVAD-------H--------- 472 (494)
T ss_pred CEEEEEEEeCCCCCCHHHHHHhc----CCCcc--------c-CCCCCCCCcccHHHHHHHHHH-------c---------
Confidence 34579999999999998876544 22111 0 111255678999876433321 1
Q ss_pred CCCCcEEEEeCCCCCCCCCceEEEEEe
Q 005751 88 KADGAFAISEDTWNEPLGRGTEIRLHL 114 (679)
Q Consensus 88 ~g~~~y~i~~~~~~~~~~~GT~I~L~l 114 (679)
+|+..+... .+.||++++.|
T Consensus 473 --gG~i~~~s~-----~~~G~~f~i~l 492 (494)
T TIGR02938 473 --GGIIDLDDD-----YSEGCRIIVEF 492 (494)
T ss_pred --CCEEEEEEC-----CCCCEEEEEEe
Confidence 245555442 24688888776
No 47
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=87.50 E-value=0.6 Score=48.49 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 9 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
.-.|.|.|||.||+.+.+...+..... .. ......-+..|+|++.|-.++
T Consensus 261 ~~~i~i~d~G~gi~~~~~~~if~~~~~-~~---------~~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 261 GAEFSVTDTGIGIAPEHLPRLTERFYR-VD---------KSRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred EEEEEEEecCCCCCHHHHhhhccCcee-cC---------cccccCCCCCcccHHHHHHHH
Confidence 346999999999999987644411110 00 001122345699998875544
No 48
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=86.91 E-value=0.59 Score=51.89 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=43.6
Q ss_pred CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEe
Q 005751 8 EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWES 87 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s 87 (679)
+.-.|+|.|||+||+.+++.+-+ .- |...- .....-.|..|+|++-|-.+++. .
T Consensus 348 ~~~~i~V~D~G~Gi~~~~~~~if----~~----f~~~~--~~~~~~~~G~GLGL~ivk~iv~~-------~--------- 401 (430)
T PRK11006 348 QGAEFSVEDNGPGIAPEHIPRLT----ER----FYRVD--KARSRQTGGSGLGLAIVKHALSH-------H--------- 401 (430)
T ss_pred CEEEEEEEEcCCCCCHHHHHHhc----cC----ccccc--CCCCCCCCCCchHHHHHHHHHHH-------C---------
Confidence 34569999999999999876543 11 11000 01112335679999877554421 1
Q ss_pred CCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 88 KADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 88 ~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|++++... .+.||++++.+.
T Consensus 402 --gG~i~i~s~-----~~~Gt~f~i~lP 422 (430)
T PRK11006 402 --DSRLEIESE-----VGKGTRFSFVLP 422 (430)
T ss_pred --CCEEEEEec-----CCCceEEEEEec
Confidence 244555432 246888888774
No 49
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=86.13 E-value=0.37 Score=56.44 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=56.2
Q ss_pred EEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHH--HHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 2 QIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA--FVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 2 ~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~--f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
.|.++-..-.+.|.|+|+||+++||. .||+-- .|+. |+..+. ....-|--|=.++|.-=++- .+|+|+..+
T Consensus 42 ~v~V~~~t~sv~ViDdG~G~~rdDl~-~lg~ry--~TSK~h~~ndl~---~~~tyGfRGeALasIsd~s~-l~v~skkk~ 114 (1142)
T KOG1977|consen 42 AVRVNMETFSVQVIDDGFGMGRDDLE-KLGNRY--FTSKCHSVNDLE---NPRTYGFRGEALASISDMSS-LVVISKKKN 114 (1142)
T ss_pred EEEecCceeEEEEEecCCCccHHHHH-HHHhhh--hhhhceeccccc---cccccccchhhhhhhhhhhh-hhhhhhhcC
Confidence 46667777889999999999999997 344322 2332 222221 23344555555555444443 346666543
Q ss_pred CC-ceE--EEeCCCCcEEEEeCCCCCCCCCceEEEEE
Q 005751 80 DK-QYV--WESKADGAFAISEDTWNEPLGRGTEIRLH 113 (679)
Q Consensus 80 ~~-~~~--w~s~g~~~y~i~~~~~~~~~~~GT~I~L~ 113 (679)
-. +|. --..|..--.+..+ ..+...||+|+++
T Consensus 115 r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 115 RTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred CchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 22 221 11222222222222 3577899999986
No 50
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=85.78 E-value=2.5 Score=48.94 Aligned_cols=123 Identities=27% Similarity=0.366 Sum_probs=68.8
Q ss_pred CEEEecCCC-CEEEEEECCCcCCHHHHHHHHhHHhccc-hHHHHHHhhcCCCCCccccccc--ceeeeeeeccEEEEEee
Q 005751 1 MQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSG-TSAFVEKMQTSGDLNLIGQFGV--GFYSVYLVADYVEVISK 76 (679)
Q Consensus 1 I~I~~d~~~-~~L~I~DnGiGMt~~el~~~LgtIa~Sg-t~~f~~~~~~~~~~~~IGqFGI--Gf~S~FmVad~V~V~Tk 76 (679)
|.|.+-.++ +-|.|+|||-|+-++||-= ++.-. |+. +.++ .+-.-|..||. -.+++-.-.-+|+|.||
T Consensus 47 I~V~vk~GGLKLlQisDnG~GI~reDl~i----lCeRftTSK-L~kF---EDL~~lsTyGFRGEALASiShVA~VtV~TK 118 (694)
T KOG1979|consen 47 IDVLVKDGGLKLLQISDNGSGIRREDLPI----LCERFTTSK-LTKF---EDLFSLSTYGFRGEALASISHVAHVTVTTK 118 (694)
T ss_pred EEEEEecCCeEEEEEecCCCccchhhhHH----HHHHhhhhh-cchh---HHHHhhhhcCccHHHHhhhhheeEEEEEEe
Confidence 344443333 6778889999999999762 23222 221 1111 12223444432 12444445569999999
Q ss_pred cCCCCceEEE-eCCCCcEEEEeCCCCCCCCCceEEEEE------------eccccccccchHHHHHHHHHhcCC
Q 005751 77 HNDDKQYVWE-SKADGAFAISEDTWNEPLGRGTEIRLH------------LRDEAGEYLEESKLKELVKKYSEF 137 (679)
Q Consensus 77 ~~~~~~~~w~-s~g~~~y~i~~~~~~~~~~~GT~I~L~------------lk~~~~e~l~~~~~~~li~kys~f 137 (679)
..++. .-|. +..+|... ..|++-....||.|++. |+...+| -.++-.+|-+|+-|
T Consensus 119 ~~~~~-cayrasY~DGkm~--~~pKpcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE---~~ki~dlv~ryAIH 186 (694)
T KOG1979|consen 119 TAEGK-CAYRASYRDGKMI--ATPKPCAGKQGTIITVEDLFYNMPTRRKALRNHAEE---YRKIMDLVGRYAIH 186 (694)
T ss_pred ecCce-eeeEEEeeccccc--cCCCCccCCCceEEEehHhhccCHHHHHHhcCcHHH---HHHHHHHHHHHhee
Confidence 98543 3343 44566644 22333456789999974 2222222 23577788888864
No 51
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=85.66 E-value=0.97 Score=55.10 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 9 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
.-.|.|.|||+||+.+++...+. .|.. . ..-.|..|+|++-|--++
T Consensus 592 ~~~i~V~D~G~Gi~~~~~~~if~--------~f~~----~--~~~~~g~GLGL~i~~~l~ 637 (914)
T PRK11466 592 QWLVEVEDSGCGIDPAKLAEIFQ--------PFVQ----V--SGKRGGTGLGLTISSRLA 637 (914)
T ss_pred EEEEEEEECCCCCCHHHHHHHhc--------hhhc----C--CCCCCCCcccHHHHHHHH
Confidence 34689999999999999875542 1211 0 112367899998765443
No 52
>PRK10815 sensor protein PhoQ; Provisional
Probab=85.44 E-value=0.99 Score=51.52 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=43.6
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEeCC
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 89 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s~g 89 (679)
-.|+|.|||.||+.+++..-+ ..+.+ . + ..-+.+|+|++-|--+++. .
T Consensus 409 v~I~V~D~G~GI~~e~~~~iF----~~f~~--------~-~-~~~~G~GLGL~Ivk~iv~~-------~----------- 456 (485)
T PRK10815 409 LHIVVEDDGPGIPESKRELIF----DRGQR--------A-D-TLRPGQGLGLSVAREITEQ-------Y----------- 456 (485)
T ss_pred EEEEEEECCCCcCHHHHHHHh----CCccc--------C-C-CCCCCcchhHHHHHHHHHH-------c-----------
Confidence 468999999999999876443 11111 0 1 1123579999876544331 1
Q ss_pred CCcEEEEeCCCCCCCCCceEEEEEeccc
Q 005751 90 DGAFAISEDTWNEPLGRGTEIRLHLRDE 117 (679)
Q Consensus 90 ~~~y~i~~~~~~~~~~~GT~I~L~lk~~ 117 (679)
+|++.+... ...||++++.+...
T Consensus 457 gG~i~v~s~-----~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 457 EGKISAGDS-----PLGGARMEVIFGRQ 479 (485)
T ss_pred CCEEEEEEC-----CCCEEEEEEEEcCC
Confidence 245666542 24699999988653
No 53
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=84.80 E-value=1.1 Score=49.35 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=45.0
Q ss_pred EEEecCCC--CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 2 QIKLDKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 2 ~I~~d~~~--~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
+|.....+ -.|+|.|||.||+.+++...+ .-+.+. ....+ -+.+|+|++-|=-+++. .
T Consensus 352 ~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~----~~f~~~-------~~~~~-~~g~GlGL~iv~~i~~~-------~- 411 (435)
T PRK09467 352 KVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF----QPFTRG-------DSARG-SSGTGLGLAIVKRIVDQ-------H- 411 (435)
T ss_pred EEEEEecCCEEEEEEEecCCCcCHHHHHHhc----CCcccC-------CCCCC-CCCeehhHHHHHHHHHH-------C-
Confidence 44443333 369999999999999876554 212110 00111 25689998865433321 1
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|.+++... ...||+|+|.+.
T Consensus 412 ----------~g~l~i~~~-----~~~G~~~~i~lp 432 (435)
T PRK09467 412 ----------NGKVELGNS-----EEGGLSARAWLP 432 (435)
T ss_pred ----------CCEEEEEEC-----CCCcEEEEEEEe
Confidence 245555432 256888888764
No 54
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=81.90 E-value=1.3 Score=50.07 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=17.7
Q ss_pred CEEEEEECCCcCCHHHHHHHH
Q 005751 10 KILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~L 30 (679)
-.|.|+|||+||+.+.+...+
T Consensus 534 ~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 534 VAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred EEEEEEeCCCCCCHHHHhhhc
Confidence 689999999999999876443
No 55
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=80.65 E-value=1.7 Score=53.88 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=29.6
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
-.|+|.|||+||+.+++.+-+.. |... . .....-.+..|+|++-|--++
T Consensus 594 l~i~V~DtG~GI~~e~~~~lFep--------F~~~-~-~~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 594 LSFRVRDTGVGIPAKEVVRLFDP--------FFQV-G-TGVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred EEEEEEEcCcCCCHHHHHHHhcc--------cccC-C-CCCCCCCCCeehhHHHHHHHH
Confidence 46889999999999987654421 1110 0 011122356799998775544
No 56
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=79.79 E-value=2.3 Score=51.10 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=34.6
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec----cEEEEEee
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISK 76 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa----d~V~V~Tk 76 (679)
-.|+|.|||+||+.+++.+-|-. |... +...+....|.-|+|++-|--++ -+|.|.|.
T Consensus 431 ~~i~V~D~G~Gi~~~~~~~iF~~--------f~~~-~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~ 492 (779)
T PRK11091 431 LTFEVEDSGIGIPEDELDKIFAM--------YYQV-KDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE 492 (779)
T ss_pred EEEEEEecCCCCCHHHHHHHHHH--------hhcc-cCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec
Confidence 47899999999999887654421 1110 00112334577899998765443 34445443
No 57
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=79.77 E-value=1.9 Score=52.43 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=29.8
Q ss_pred EEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 11 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 11 ~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
.|.|.|||+||+++++.+-+-. |...- .....-.|..|+|++-|--++
T Consensus 446 ~i~V~D~G~Gi~~~~~~~if~~--------f~~~~--~~~~~~~~g~GLGL~i~~~i~ 493 (919)
T PRK11107 446 EVQIRDTGIGISERQQSQLFQA--------FRQAD--ASISRRHGGTGLGLVITQKLV 493 (919)
T ss_pred EEEEEEeCCCcCHHHHHHHhhh--------hccCC--CCCCCCCCCcchhHHHHHHHH
Confidence 4889999999999987644411 11100 011223467899998775554
No 58
>PRK10364 sensor protein ZraS; Provisional
Probab=78.52 E-value=2.7 Score=46.96 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.7
Q ss_pred CCCCEEEEEECCCcCCHHHHHHHH
Q 005751 7 KEKKILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 7 ~~~~~L~I~DnGiGMt~~el~~~L 30 (679)
.+.-.|+|.|||.||+.+.+.+-+
T Consensus 378 ~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 378 GAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred CCeEEEEEEECCCCCCHHHHHHHh
Confidence 334579999999999998876444
No 59
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=77.90 E-value=2.4 Score=52.40 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=28.8
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
-.|.|.|||+||+.+++.+-+-. |... ......-+..|+|+.-|--++
T Consensus 600 l~I~V~DtG~GI~~e~l~~IFeP--------F~t~---~~~~~~~~GtGLGLaI~k~Lv 647 (894)
T PRK10618 600 LTIRILDTGAGVSIKELDNLHFP--------FLNQ---TQGDRYGKASGLTFFLCNQLC 647 (894)
T ss_pred EEEEEEECCCCCCHHHHHHhcCc--------cccC---CCCCCCCCCcChhHHHHHHHH
Confidence 36889999999999988754421 1110 011122345799987765443
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=77.01 E-value=2.6 Score=46.68 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=29.3
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
..|+|.|||.||+.+++...+-. |.. ... .-.+..|+|+.-|-.++
T Consensus 381 ~~i~i~D~G~Gi~~~~~~~if~~--------f~~----~~~-~~~~g~GlGL~iv~~i~ 426 (449)
T PRK10337 381 RNFTVRDNGPGVTPEALARIGER--------FYR----PPG-QEATGSGLGLSIVRRIA 426 (449)
T ss_pred eEEEEEECCCCCCHHHHHHhccc--------ccC----CCC-CCCCccchHHHHHHHHH
Confidence 47999999999999987755421 211 011 12345899988764444
No 61
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=76.19 E-value=2.5 Score=50.72 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEEecC--CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc
Q 005751 2 QIKLDK--EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD 69 (679)
Q Consensus 2 ~I~~d~--~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad 69 (679)
.|.+.. +.-.|+|.|||.||+.+++..-+-..- ++ + .....--+..|+|++-|-.+++
T Consensus 620 ~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~-t~-~--------~~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 620 EVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMV-SV-R--------DQGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred EEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCe-ec-C--------CCCCCCCCCccHHHHHHHHHHH
Confidence 444433 334689999999999998765441111 00 0 0111223468999998755554
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=76.02 E-value=2.4 Score=52.28 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 9 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
.-.|.|.|||.||+.+++..-+ .- |.. .....-.+..|+|++-|-.++
T Consensus 810 ~v~I~V~D~G~GI~~e~~~~IF----ep----F~~----~~~~~~~~G~GLGL~Ivk~iv 857 (895)
T PRK10490 810 RLQLDVWDNGPGIPPGQEQLIF----DK----FAR----GNKESAIPGVGLGLAICRAIV 857 (895)
T ss_pred EEEEEEEECCCCCCHHHHHHhc----CC----Ccc----CCCCCCCCCccHHHHHHHHHH
Confidence 3468899999999998875443 11 111 111122345899998764443
No 63
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=74.68 E-value=3.9 Score=46.64 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=42.2
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEeCC
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 89 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s~g 89 (679)
-.|.|.|||.||+.+++..-+ .-|.+ ..... -|..|+|++-|.-+++. .
T Consensus 469 ~~i~V~D~G~Gi~~~~~~~iF----~~~~~--------tk~~~-~~g~GlGL~ivk~iv~~-------~----------- 517 (545)
T PRK15053 469 VVIEVADQGCGVPESLRDKIF----EQGVS--------TRADE-PGEHGIGLYLIASYVTR-------C----------- 517 (545)
T ss_pred EEEEEEeCCCCcCHHHHHHHh----CCCCC--------CCCCC-CCCceeCHHHHHHHHHH-------c-----------
Confidence 468999999999999876544 21211 01111 24569999987655432 1
Q ss_pred CCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 90 DGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 90 ~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|.+++... .+.||++++.|..
T Consensus 518 ~G~i~v~s~-----~~~Gt~f~i~lP~ 539 (545)
T PRK15053 518 GGVITLEDN-----DPCGTLFSIFIPK 539 (545)
T ss_pred CCEEEEEEC-----CCCeEEEEEEECC
Confidence 234444432 2568888777653
No 64
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=74.14 E-value=3 Score=50.82 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=28.2
Q ss_pred EEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 11 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 11 ~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
.|.|.|||+||+.+++..-+ .- |. . .. . |..|+|++-|--++
T Consensus 609 ~i~V~D~G~GI~~e~~~~iF----e~----F~---~--~~-~--~G~GLGL~i~~~iv 650 (828)
T PRK13837 609 LLRVSDTGAGIDEAVLPHIF----EP----FF---T--TR-A--GGTGLGLATVHGIV 650 (828)
T ss_pred EEEEEECCCCCCHHHHHHhh----CC----cc---c--CC-C--CCCcchHHHHHHHH
Confidence 68999999999998876433 21 11 0 11 1 77899998875544
No 65
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=72.13 E-value=3.7 Score=51.76 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=40.9
Q ss_pred EEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEeCCC
Q 005751 11 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 90 (679)
Q Consensus 11 ~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s~g~ 90 (679)
.|+|.|||+||+.+++.+-+- - |.. .....--+..|+|++-|-.+++. . +
T Consensus 866 ~i~V~D~G~Gi~~~~~~~iF~----~----f~~----~~~~~~~~G~GLGL~i~~~iv~~-------~-----------g 915 (1197)
T PRK09959 866 KMTIMDSGSGLSQEEQQQLFK----R----YSQ----TSAGRQQTGSGLGLMICKELIKN-------M-----------Q 915 (1197)
T ss_pred EEEEEEcCCCCCHHHHHHhhc----c----ccc----cccCCCCCCcCchHHHHHHHHHH-------c-----------C
Confidence 478999999999988764431 1 110 00111235689999876554421 1 2
Q ss_pred CcEEEEeCCCCCCCCCceEEEEEec
Q 005751 91 GAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 91 ~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
|..++... .+.||+++++|-
T Consensus 916 G~i~v~s~-----~~~Gt~f~i~lP 935 (1197)
T PRK09959 916 GDLSLESH-----PGIGTTFTITIP 935 (1197)
T ss_pred CEEEEEeC-----CCCcEEEEEEEE
Confidence 44455432 246888888763
No 66
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=69.46 E-value=3.5 Score=47.76 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.8
Q ss_pred CCCEEEEEECCCcCCHH
Q 005751 8 EKKILSIRDRGIGMTKE 24 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~ 24 (679)
+.-.|+|.|||+||+.+
T Consensus 499 ~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 499 NQVKLSVQDNGCGVPEN 515 (569)
T ss_pred CEEEEEEEECCCCCCcc
Confidence 33578999999999974
No 67
>PRK10547 chemotaxis protein CheA; Provisional
Probab=65.74 E-value=11 Score=45.27 Aligned_cols=19 Identities=21% Similarity=0.597 Sum_probs=15.9
Q ss_pred CEEEEEECCCcCCHHHHHH
Q 005751 10 KILSIRDRGIGMTKEDLIK 28 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~ 28 (679)
-.|+|.|+|.||+.+.+..
T Consensus 430 v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 430 ICIEVTDDGAGLNRERILA 448 (670)
T ss_pred EEEEEEeCCCCCCHHHHHH
Confidence 3588999999999987754
No 68
>PRK13557 histidine kinase; Provisional
Probab=62.65 E-value=6.3 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.4
Q ss_pred EEEEEECCCcCCHHHHHHHH
Q 005751 11 ILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 11 ~L~I~DnGiGMt~~el~~~L 30 (679)
+|+|.|||+||+.+.+..-|
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEcCCCCCCHHHHHhcc
Confidence 69999999999998766433
No 69
>PRK03660 anti-sigma F factor; Provisional
Probab=59.97 E-value=14 Score=34.54 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=12.3
Q ss_pred CCEEEEEECCCcCCH
Q 005751 9 KKILSIRDRGIGMTK 23 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~ 23 (679)
.-.++|.|+|.||+.
T Consensus 74 ~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 74 ELEITVRDEGKGIED 88 (146)
T ss_pred EEEEEEEEccCCCCh
Confidence 346899999999974
No 70
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=52.88 E-value=16 Score=35.46 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=26.0
Q ss_pred eEEeCCCCHHHHHHHHhhcCCCCch---------hHHHHHHHHHHH
Q 005751 573 VLEINPRHPIIKELRERVVKDPEDA---------GVQQTAQLIYQT 609 (679)
Q Consensus 573 vLEINp~HPlIk~L~~~~~~d~~~~---------~~~~la~~Lyd~ 609 (679)
-=+.+|+||||++|..+...|-.++ ++=.+|++.||+
T Consensus 15 LE~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~ 60 (147)
T PF06112_consen 15 LEADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQ 60 (147)
T ss_pred ecccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHH
Confidence 3378999999999999876655443 233566666665
No 71
>PRK09835 sensor kinase CusS; Provisional
Probab=51.69 E-value=11 Score=41.77 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=17.7
Q ss_pred CCEEEEEECCCcCCHHHHHHHH
Q 005751 9 KKILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~L 30 (679)
.-.|+|.|||.||+.+++..-+
T Consensus 407 ~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 407 QVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred EEEEEEEECCCCcCHHHHHHHh
Confidence 3479999999999998877443
No 72
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=50.95 E-value=22 Score=32.87 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=12.2
Q ss_pred CCCEEEEEECCCcCC
Q 005751 8 EKKILSIRDRGIGMT 22 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt 22 (679)
+.-.|.|.|+|.||+
T Consensus 73 ~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 73 HEVYITVRDEGIGIE 87 (137)
T ss_pred CEEEEEEEEcCCCcC
Confidence 344688899999997
No 73
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=47.90 E-value=35 Score=33.07 Aligned_cols=53 Identities=11% Similarity=0.315 Sum_probs=41.7
Q ss_pred CHHHHHHHHhhcCCCCchhHHHHHHHHHHHH---HHhCCC--CCCCHHHHHHHHHHHHHhh
Q 005751 580 HPIIKELRERVVKDPEDAGVQQTAQLIYQTA---LMESGF--SLNDPKDFASRIYSTVKSS 635 (679)
Q Consensus 580 HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~A---lL~~G~--~ieDp~~f~~rln~lL~~~ 635 (679)
||.|+.|.+++++ ++.+..++.++|++. .--.|. .+.|-..|..-+|.+|..+
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~A 59 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTA 59 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhC
Confidence 8999999999965 467999999999991 112242 4788899999999998765
No 74
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=42.03 E-value=22 Score=36.06 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=16.0
Q ss_pred CEEEEEECCCcCCHHHHH
Q 005751 10 KILSIRDRGIGMTKEDLI 27 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~ 27 (679)
-.|.|.|||.||+++.+.
T Consensus 260 i~i~V~D~G~Gi~~~~~~ 277 (336)
T COG0642 260 VTISVEDTGPGIPEEELE 277 (336)
T ss_pred EEEEEEcCCCCCCHHHHH
Confidence 589999999999999844
No 75
>PRK13560 hypothetical protein; Provisional
Probab=37.08 E-value=19 Score=42.63 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.9
Q ss_pred CEEEEEECCCcCCHH
Q 005751 10 KILSIRDRGIGMTKE 24 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~ 24 (679)
-.|+|.|||+||+.+
T Consensus 748 v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 748 VNLCVADDGIGLPAG 762 (807)
T ss_pred EEEEEEeCCCcCCcc
Confidence 368999999999875
No 76
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=32.00 E-value=2.9e+02 Score=29.80 Aligned_cols=22 Identities=9% Similarity=0.130 Sum_probs=13.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHh
Q 005751 533 DNTPCVVVTSKYGWSANMERIMQSQ 557 (679)
Q Consensus 533 ~~sPa~lv~~e~g~s~~Merimk~q 557 (679)
+++|.++... .|..+++++...
T Consensus 215 ~~~vGi~l~d---~s~Ef~~~f~~a 236 (285)
T COG1578 215 SDIVGIWLED---VSEEFREAFESA 236 (285)
T ss_pred CCcceeeHHh---ccHHHHHHhccC
Confidence 4566666542 477777777744
No 77
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=31.28 E-value=39 Score=32.76 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.2
Q ss_pred EecCCCCEEEEEECCCcCCHHHHH
Q 005751 4 KLDKEKKILSIRDRGIGMTKEDLI 27 (679)
Q Consensus 4 ~~d~~~~~L~I~DnGiGMt~~el~ 27 (679)
....+.-.+.|+|+|.||+...+.
T Consensus 72 ~~~~~~l~i~V~D~G~g~d~~~~~ 95 (161)
T PRK04069 72 EIYEDRLEIVVADNGVSFDYETLK 95 (161)
T ss_pred EEECCEEEEEEEECCcCCChHHhc
Confidence 334556789999999999976654
No 78
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=31.18 E-value=55 Score=37.22 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=16.5
Q ss_pred CEEEEEECCCcCCHHHHHHHH
Q 005751 10 KILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~L 30 (679)
-.+.|.|||+||++.-+....
T Consensus 387 i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 387 IQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred EEEEEeeCCCCCChhHHHHHH
Confidence 467889999999997766443
No 79
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=29.89 E-value=27 Score=42.35 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=53.8
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccc--hHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecC-CCCceEE-
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSG--TSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVW- 85 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sg--t~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~-~~~~~~w- 85 (679)
=.|+|+|+|-|++.+-|.+.- -.-| +.+=.+.|. +. =| +.+=|-..|.-|++|+=.|-+. |-.-++=
T Consensus 477 ivIev~DDG~Gid~ekI~~KA---iErGli~~~~a~~lS---d~-Ei--~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~ 547 (716)
T COG0643 477 IVIEVSDDGAGIDREKIREKA---IERGLITEEEAETLS---DE-EI--LNLIFAPGFSTAEQVTDVSGRGVGMDVVKTN 547 (716)
T ss_pred EEEEEeeCCCCCCHHHHHHHH---HHcCCCChHHhccCC---HH-HH--HHHHhcCCCCcchhhhcccCCccCHHHHHHH
Confidence 367899999999999887443 1122 111000011 11 11 1233778899999998777654 3221110
Q ss_pred EeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 86 ESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 86 ~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
...-+|+-+|.. ..+.||+++|+|--
T Consensus 548 I~~LgG~I~V~S-----~~G~GT~Fti~LPL 573 (716)
T COG0643 548 IEQLGGSISVSS-----EPGKGTTFTIRLPL 573 (716)
T ss_pred HHHcCCEEEEEe-----cCCCCeEEEEecCc
Confidence 012247777765 35789999999864
No 80
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=29.59 E-value=50 Score=37.28 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=18.0
Q ss_pred CCEEEEEECCCcCCHHHHHHHH
Q 005751 9 KKILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~L 30 (679)
.-.|.|.|||.||+.+++..-+
T Consensus 467 ~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 467 WLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred EEEEEEEECCCCCCHHHHHHHH
Confidence 3468899999999998887555
No 81
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=28.08 E-value=48 Score=40.32 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred EEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeee-eeeccEEEEEeecCCCCceEEEeC
Q 005751 12 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHNDDKQYVWESK 88 (679)
Q Consensus 12 L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~-FmVad~V~V~Tk~~~~~~~~w~s~ 88 (679)
|...|+|+||+.+++..-+ .| ......||++|=|+-|. +=.+..+.+.|+..+.-+....+.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~---------~f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sq 64 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAI---------NF------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQ 64 (775)
T ss_pred cccccCCCCcCchhhhhhh---------hh------cccccccccccCcccccccccCcccceeeccccccceeeeec
No 82
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=27.85 E-value=36 Score=39.67 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=39.6
Q ss_pred ecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceE
Q 005751 5 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYV 84 (679)
Q Consensus 5 ~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~ 84 (679)
...+.-+++|+|||+|.+.. ..+.|++|.-.+- | |. .
T Consensus 508 ~~~g~~~~~VeDnG~Gi~~~--------------------------~e~~gHyGL~IM~-----E------RA---~--- 544 (574)
T COG3850 508 QNDGQVTLTVEDNGVGIDEA--------------------------AEPSGHYGLNIMR-----E------RA---Q--- 544 (574)
T ss_pred ecCCeEEEEEeeCCcCCCCc--------------------------cCCCCCcchHHHH-----H------HH---H---
Confidence 34466799999999997653 2467788765421 0 10 0
Q ss_pred EEeCCCCcEEEEeCCCCCCCCCceEEEEEeccc
Q 005751 85 WESKADGAFAISEDTWNEPLGRGTEIRLHLRDE 117 (679)
Q Consensus 85 w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~ 117 (679)
| -.|...|+. +.+.||+|+|.+.+.
T Consensus 545 ~---L~~~L~i~~-----~~~gGT~V~ltf~~~ 569 (574)
T COG3850 545 R---LGGQLRIRR-----REGGGTEVSLTFPPE 569 (574)
T ss_pred H---hcCeEEEee-----cCCCCeEEEEEeccc
Confidence 0 125566665 347899999998864
No 83
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=27.77 E-value=31 Score=37.67 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEecCCCCEEEEEECCCcCCHHHHH
Q 005751 2 QIKLDKEKKILSIRDRGIGMTKEDLI 27 (679)
Q Consensus 2 ~I~~d~~~~~L~I~DnGiGMt~~el~ 27 (679)
++..+.+.-.|+|.|||.|-+.+...
T Consensus 303 ~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 303 TLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred EEEEcCCEEEEEEEECCcCCCccccC
Confidence 34445556789999999998877654
No 84
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=27.61 E-value=1.6e+02 Score=25.55 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCceEEEEeCCCHHHH-hcChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeec
Q 005751 430 GQKDIFYITGANKEQL-EKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVS 488 (679)
Q Consensus 430 ~qk~IYY~t~~s~~~~-~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~ 488 (679)
+.+.+|-++|+++..+ ..+|+ +.+.|.+|||..+.+++.+...|......+..-|.
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~---a~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiG 80 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPL---AAKNNAPILLVNNSLPSSVKAFLKSLNIKKVYIIG 80 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHH---HHhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEEC
Confidence 4567888899886443 34443 33478999999999999999999888666666553
No 85
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=26.51 E-value=57 Score=38.04 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=26.0
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeee
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV 64 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~ 64 (679)
-.|.|.|||+||+++.....+ ..|.|. +-.|.-|+|+|=+
T Consensus 463 lvieV~D~G~GI~~~~~~~iF-e~G~St--------------k~~~~rGiGL~Lv 502 (537)
T COG3290 463 LVIEVADTGPGIPPEVRDKIF-EKGVST--------------KNTGGRGIGLYLV 502 (537)
T ss_pred EEEEEeCCCCCCChHHHHHHH-hcCccc--------------cCCCCCchhHHHH
Confidence 456788999999998877332 333221 1156778998754
No 86
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=25.49 E-value=1e+02 Score=36.85 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=35.1
Q ss_pred CEEEec--CCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 1 MQIKLD--KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 1 I~I~~d--~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
|.|..+ .+..++.|.|||+|++.+-+.+-|.---+-+ +....-| -|+|++=|=-++
T Consensus 659 i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~-----------s~~~y~g-tG~GL~I~kkI~ 716 (750)
T COG4251 659 IEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH-----------SRDEYLG-TGLGLAICKKIA 716 (750)
T ss_pred eEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC-----------chhhhcC-CCccHHHHHHHH
Confidence 345543 4568999999999999987665552222111 1234555 799998774443
No 87
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=22.91 E-value=52 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.6
Q ss_pred CEEEEEECCCcCCHHH
Q 005751 10 KILSIRDRGIGMTKED 25 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~e 25 (679)
..++|+|||.|+..+.
T Consensus 160 ~~l~v~deg~G~~~~~ 175 (221)
T COG3920 160 FLLTVWDEGGGPPVEA 175 (221)
T ss_pred EEEEEEECCCCCCCCC
Confidence 4899999999988653
No 88
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.34 E-value=1.2e+03 Score=26.81 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=52.4
Q ss_pred CCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcC---CCceEeec
Q 005751 412 KSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYE---DKKFQNVS 488 (679)
Q Consensus 412 ~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~---gk~f~sV~ 488 (679)
.|-|+.+++.....++....+.+-+++++.++.......-.....-|++|....+|- -+...+..+. ++.++=||
T Consensus 250 tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~--~L~~aL~~lk~~~~~DvVLID 327 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA--AMTRALTYFKEEARVDYILID 327 (436)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHH--HHHHHHHHHHhccCCCEEEEe
Confidence 455788888887666654446788888887763333333444556789988776552 2345665553 67899898
Q ss_pred ccccc
Q 005751 489 KEGLK 493 (679)
Q Consensus 489 ~~~~~ 493 (679)
..+..
T Consensus 328 TaGRs 332 (436)
T PRK11889 328 TAGKN 332 (436)
T ss_pred Ccccc
Confidence 88654
No 89
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=20.67 E-value=43 Score=34.11 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=31.5
Q ss_pred cCCCCcEEEEecCCCchHHHHHHHHHh-cccchhhhhhccCCceEEeCCCCHHHHHHHHhh
Q 005751 531 RLDNTPCVVVTSKYGWSANMERIMQSQ-TLSDASKQAYMRGKRVLEINPRHPIIKELRERV 590 (679)
Q Consensus 531 RL~~sPa~lv~~e~g~s~~Merimk~q-~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~ 590 (679)
|.-+--..||...+-+|.-+.|+|-.. ++. -...-...++-.|||.|||.+.|-..+
T Consensus 89 RV~EGMGLiVLHSGHfSKiFkRLMGTpC~LK---WREAgErERvWvvnp~HPIA~GigE~~ 146 (261)
T COG4813 89 RVWEGMGLIVLHSGHFSKIFKRLMGTPCALK---WREAGERERVWVVNPGHPIAEGIGESF 146 (261)
T ss_pred HHhcccceEEEeccchhHHHHHHcCCccccc---hhhcCcceeEEEeCCCCchhhcchhhE
Confidence 333344455554444555555555421 000 001123468999999999999997644
No 90
>PRK04081 hypothetical protein; Provisional
Probab=20.34 E-value=2.5e+02 Score=28.88 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=37.8
Q ss_pred eEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHH
Q 005751 83 YVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKK 133 (679)
Q Consensus 83 ~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~k 133 (679)
++.+-..+|.|.|.+. . +..=|+|+|.-.+..+..|..+.++.||+.
T Consensus 51 viIeE~a~G~YKI~eE---~-Ps~~Trvilr~~dG~ER~LS~eE~dkLi~e 97 (207)
T PRK04081 51 VIIEEQADGSYKILEE---Y-PSSETRVVLRDLDGTERVLSQEEIDKLIKE 97 (207)
T ss_pred EEEEecCCCceEeeee---c-CCCcceEEEecCCCcccccCHHHHHHHHHH
Confidence 5667788899999763 2 233599999988889999999999999875
No 91
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=20.10 E-value=7.2e+02 Score=24.35 Aligned_cols=127 Identities=19% Similarity=0.234 Sum_probs=75.4
Q ss_pred ceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCC-----hHHHHHHhhhcCCCceEeeccc
Q 005751 416 KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPV-----DEYLMQYLMDYEDKKFQNVSKE 490 (679)
Q Consensus 416 ~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpi-----DE~~i~~L~~~~gk~f~sV~~~ 490 (679)
..--+.+.+...-.. +.+.++...... -..+++||+.-.+ |+-+...|.+.++++.--....
T Consensus 10 NTkkvA~aI~~~l~~-~~~~~~~~~~~~------------~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~ 76 (160)
T PF12641_consen 10 NTKKVAEAIAEALGA-KDIVSVEEPPED------------LEDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTA 76 (160)
T ss_pred hHHHHHHHHHHHCCC-ceeEeccccccC------------CCCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEec
Confidence 345566665554444 566666432110 3568999998755 6778888888899888776666
Q ss_pred cccCCCCcchHHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccC
Q 005751 491 GLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRG 570 (679)
Q Consensus 491 ~~~l~~~ek~~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~ 570 (679)
+... ..+-+..++..++..|... .++.. ..+- .+.+++.|...|+. |
T Consensus 77 G~~~--------~s~~~~~~~~~~~~~~~~~--------~~~lg--~f~C--qGk~~~~~~e~~~~-----------~-- 123 (160)
T PF12641_consen 77 GAGP--------DSEYAKKILKNVEALLPKG--------NEILG--TFMC--QGKMDPKVIEKYKK-----------M-- 123 (160)
T ss_pred CCCC--------chHHHHHHHHHHHHhhccC--------Ceecc--eEEe--CCcCCHHHHHHHHh-----------c--
Confidence 5432 1233445555555555443 12111 1222 34578887766662 1
Q ss_pred CceEEeCCCCHHHHHHHHhhc
Q 005751 571 KRVLEINPRHPIIKELRERVV 591 (679)
Q Consensus 571 kkvLEINp~HPlIk~L~~~~~ 591 (679)
+.-||.|+.+..+..++.
T Consensus 124 ---~~~~~~~~~~~~~~~~~~ 141 (160)
T PF12641_consen 124 ---LPKNPPHAMTPERLARFD 141 (160)
T ss_pred ---cCCCCCCcccHHHHHHHH
Confidence 556899999998887653
Done!