Query 005751
Match_columns 679
No_of_seqs 193 out of 1376
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:28:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 3E-156 1E-160 1333.8 42.6 606 1-637 64-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 6E-144 2E-148 1232.6 54.8 568 1-641 83-664 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 1E-137 5E-142 1176.3 44.8 547 1-633 65-623 (624)
4 3hjc_A Heat shock protein 83-1 100.0 1E-122 5E-127 1011.6 39.1 413 202-641 11-427 (444)
5 3q6m_A Heat shock protein HSP 100.0 2E-122 7E-127 1006.5 38.0 412 209-647 2-417 (448)
6 1y4s_A Chaperone protein HTPG; 100.0 4E-123 1E-127 1046.9 30.2 481 1-557 65-557 (559)
7 2cge_A ATP-dependent molecular 100.0 2E-117 6E-122 967.2 38.9 400 210-637 1-405 (405)
8 2gq0_A Chaperone protein HTPG; 100.0 1.6E-91 5.4E-96 730.6 24.1 289 210-541 2-294 (303)
9 1hk7_A Heat shock protein HSP8 100.0 2.8E-91 9.5E-96 724.3 24.0 284 210-520 1-288 (288)
10 3pry_A Heat shock protein HSP 100.0 1.9E-88 6.5E-93 697.6 25.2 263 208-496 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 4.3E-88 1.5E-92 693.0 22.9 257 208-490 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 1.4E-86 4.8E-91 685.2 23.4 261 208-491 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 1.6E-45 5.3E-50 382.4 17.3 197 1-208 84-281 (281)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 8.3E-42 2.8E-46 354.5 13.8 198 1-208 66-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 2E-41 6.8E-46 345.5 14.7 145 1-146 121-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 2E-40 6.8E-45 337.8 15.9 148 1-149 77-224 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 1.8E-35 6E-40 304.1 15.8 154 1-155 98-251 (256)
18 2gqp_A Endoplasmin; GRP94, HSP 100.0 1.5E-34 5.3E-39 295.2 13.6 147 1-148 70-221 (236)
19 3t0h_A Heat shock protein HSP 100.0 2.3E-34 7.8E-39 292.2 14.6 153 1-154 70-222 (228)
20 1sf8_A Chaperone protein HTPG; 100.0 1E-32 3.5E-37 255.6 12.3 115 508-633 11-125 (126)
21 1yc1_A HSP 86, heat shock prot 100.0 1.9E-32 6.6E-37 283.8 15.4 149 1-150 106-254 (264)
22 2wer_A ATP-dependent molecular 100.0 5.5E-32 1.9E-36 273.4 15.1 149 1-149 64-212 (220)
23 2ior_A Chaperone protein HTPG; 99.9 2.6E-28 8.8E-33 249.0 11.6 143 1-146 85-232 (235)
24 1b63_A MUTL; DNA mismatch repa 99.4 1.6E-13 5.6E-18 146.4 9.2 127 1-136 44-182 (333)
25 1h7s_A PMS1 protein homolog 2; 99.1 1E-10 3.5E-15 126.4 6.4 130 1-138 54-195 (365)
26 3h4l_A DNA mismatch repair pro 99.0 1.4E-10 4.7E-15 125.4 4.5 126 1-137 45-184 (367)
27 3na3_A DNA mismatch repair pro 98.9 3.9E-09 1.3E-13 113.2 9.0 122 1-136 48-186 (348)
28 1kij_A DNA gyrase subunit B; t 98.1 1.1E-06 3.9E-11 95.6 4.4 137 1-146 56-205 (390)
29 1mu5_A Type II DNA topoisomera 98.1 1.6E-06 5.4E-11 96.7 4.4 114 10-135 71-196 (471)
30 2zbk_B Type 2 DNA topoisomeras 97.9 4.8E-06 1.7E-10 94.0 4.5 115 10-136 70-196 (530)
31 3fv5_A DNA topoisomerase 4 sub 97.9 7.8E-06 2.7E-10 81.2 5.0 138 1-146 41-190 (201)
32 2q2e_B Type 2 DNA topoisomeras 97.5 2.1E-05 7.3E-10 90.2 1.3 132 2-146 63-212 (621)
33 1s16_A Topoisomerase IV subuni 97.4 0.00016 5.5E-09 78.7 7.0 136 1-146 55-204 (390)
34 4duh_A DNA gyrase subunit B; s 97.2 0.00016 5.5E-09 72.8 3.1 136 1-147 59-208 (220)
35 4emv_A DNA topoisomerase IV, B 97.1 0.00028 9.6E-09 71.3 4.4 136 1-147 64-214 (226)
36 1ei1_A DNA gyrase B, GYRB; ATP 96.9 0.00059 2E-08 74.3 4.9 134 1-146 58-206 (391)
37 1zxm_A TOPO IIA ATPase, DNA to 96.8 0.00089 3.1E-08 73.0 5.3 128 1-135 77-219 (400)
38 3cwv_A DNA gyrase, B subunit, 96.8 0.0018 6.1E-08 70.0 7.2 130 1-146 54-194 (369)
39 3lnu_A Topoisomerase IV subuni 96.6 0.0013 4.4E-08 71.9 4.5 135 1-146 74-223 (408)
40 3ttz_A DNA gyrase subunit B; p 95.2 0.01 3.5E-07 58.6 3.6 118 1-147 55-181 (198)
41 1pvg_A DNA topoisomerase II; G 94.2 0.017 5.9E-07 63.3 2.5 107 1-118 89-210 (418)
42 3jz3_A Sensor protein QSEC; he 93.9 0.012 4.1E-07 56.4 0.5 77 2-116 140-216 (222)
43 1i58_A Chemotaxis protein CHEA 91.5 0.064 2.2E-06 50.6 1.9 22 6-27 88-109 (189)
44 3ehh_A Sensor kinase (YOCF pro 91.3 0.081 2.8E-06 50.8 2.4 21 6-26 158-178 (218)
45 1id0_A PHOQ histidine kinase; 90.7 0.093 3.2E-06 47.3 2.0 74 6-116 71-144 (152)
46 1ysr_A Sensor-type histidine k 90.7 0.091 3.1E-06 47.4 2.0 74 6-115 74-147 (150)
47 3d36_A Sporulation kinase B; G 90.3 0.14 4.7E-06 49.6 3.1 49 6-69 152-200 (244)
48 1th8_A Anti-sigma F factor; SP 90.3 0.15 5.3E-06 46.0 3.1 54 6-75 71-124 (145)
49 2c2a_A Sensor histidine kinase 90.0 0.057 1.9E-06 53.5 -0.0 50 9-68 173-222 (258)
50 2btz_A Pyruvate dehydrogenase 89.8 0.13 4.4E-06 55.0 2.5 87 2-116 261-349 (394)
51 4ew8_A Sensor protein DIVL; si 89.3 0.13 4.4E-06 50.9 2.0 70 7-115 185-254 (268)
52 4gfh_A DNA topoisomerase 2; to 89.3 0.35 1.2E-05 59.3 6.1 125 1-134 84-223 (1177)
53 3ehg_A Sensor kinase (YOCF pro 88.8 0.092 3.2E-06 46.6 0.4 21 6-26 68-88 (128)
54 3sl2_A Sensor histidine kinase 88.5 0.053 1.8E-06 50.7 -1.5 73 10-115 78-150 (177)
55 2q8g_A [pyruvate dehydrogenase 88.1 0.19 6.5E-06 54.0 2.4 88 2-116 273-362 (407)
56 2e0a_A Pyruvate dehydrogenase 88.0 0.17 5.8E-06 54.2 1.9 88 2-116 260-349 (394)
57 1bxd_A ENVZ(290-450), protein 87.9 0.085 2.9E-06 48.3 -0.5 51 6-68 74-124 (161)
58 1y8o_A [pyruvate dehydrogenase 87.8 0.19 6.5E-06 54.4 2.2 82 8-116 292-373 (419)
59 1b3q_A Protein (chemotaxis pro 85.1 0.46 1.6E-05 50.7 3.4 20 8-27 149-168 (379)
60 3zxo_A Redox sensor histidine 84.9 0.26 8.8E-06 43.2 1.1 20 5-25 70-89 (129)
61 1gkz_A [3-methyl-2-oxobutanoat 84.7 0.13 4.6E-06 54.7 -1.1 27 2-28 269-297 (388)
62 1r62_A Nitrogen regulation pro 49.3 4.8 0.00016 35.8 0.9 22 9-30 91-112 (160)
63 3zxq_A Hypoxia sensor histidin 48.6 5.2 0.00018 34.4 1.0 19 6-25 67-85 (124)
64 3a0y_A Sensor protein; ATP-LID 46.1 4.6 0.00016 35.6 0.2 21 8-28 78-98 (152)
65 3a0r_A Sensor protein; four he 34.6 11 0.00037 38.1 0.9 21 7-27 274-294 (349)
66 3bma_A D-alanyl-lipoteichoic a 33.8 72 0.0025 34.6 7.2 47 427-475 260-306 (407)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-156 Score=1333.84 Aligned_cols=606 Identities=50% Similarity=0.865 Sum_probs=510.0
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.++.++++|+|+|||||||+++|.++|||||+|||+.|+++++.+.+..+|||||||||||||||++|+|+||++++
T Consensus 64 I~I~~d~~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~ 143 (677)
T 2cg9_A 64 IRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD 143 (677)
T ss_dssp EEEEEEGGGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTS
T ss_pred EEEEEeCCCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCC
Confidence 67788888899999999999999999999999999999999988875557789999999999999999999999999987
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCCCC
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDD 160 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~~~ 160 (679)
.++.|+++|+|.|+|.+++.+.+.++||+|+|||+++..+|++.++|+++|++||+||+|||+++..++.+.++++++++
T Consensus 144 ~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~ 223 (677)
T 2cg9_A 144 EQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEE 223 (677)
T ss_dssp CEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC-------
T ss_pred ceEEEEEcCCceEEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhh
Confidence 89999999999999998533346789999999999999999999999999999999999999998655443333222111
Q ss_pred Cc---hHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhCCC
Q 005751 161 SS---DEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDF 237 (679)
Q Consensus 161 ~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~ 237 (679)
++ +++|. + +++..+++++ ++++++++++++++++++.+.+|++||+++|||+|+|++||+|||.+|||+++++|
T Consensus 224 ~~~~~~~~e~-~-~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~ 300 (677)
T 2cg9_A 224 KKDEEKKDEE-K-KDEDDKKPKL-EEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDW 300 (677)
T ss_dssp -----------------------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCC
T ss_pred hccccccccc-c-cccccccccc-ccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCC
Confidence 00 00000 0 0000011111 11111111234456666777899999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCCCC
Q 005751 238 SDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPL 317 (679)
Q Consensus 238 ~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpL 317 (679)
++||+|+||++||+++|+||||||+++|+++|.+ ...+++|+||||||||+|+|++|||+||+||||||||+||||
T Consensus 301 --~~pl~~~H~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpL 376 (677)
T 2cg9_A 301 --EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPL 376 (677)
T ss_dssp --SCCSEEEEEEECSSSCEEEEEEECSSCCC-----------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCC
T ss_pred --CCchheEEecccccceEEEEEEEcCCCchhhhhh--hhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCc
Confidence 9999999999999999999999999999999873 145689999999999999999999999999999999999999
Q ss_pred ccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccCHH
Q 005751 318 NVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAA 397 (679)
Q Consensus 318 NvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~ 397 (679)
|||||+||+|++|++||+.|++||+++|.+||++ +++|.+||++||++||+|+++|+.
T Consensus 377 NvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~~----------------------~e~y~~f~~~fg~~lK~G~~eD~~ 434 (677)
T 2cg9_A 377 NLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED----------------------SEQFEKFYSAFSKNIKLGVHEDTQ 434 (677)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHHHHHHHHHHSC----------------------SHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred ccCHHHhccCHHHHHHHHHHHHHHHHHHHHHHhC----------------------HHHHHHHHHHHhHHhhhhhccCHH
Confidence 9999999999999999999999999999999986 579999999999999999999999
Q ss_pred hHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHhh
Q 005751 398 NRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLM 477 (679)
Q Consensus 398 ~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~ 477 (679)
||++|++||||+||.++++++||++|++|||++|+.|||++|+|++++++|||+|.|++||+|||||++||||||+++|.
T Consensus 435 nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~ 514 (677)
T 2cg9_A 435 NRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLK 514 (677)
T ss_dssp SHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGS
T ss_pred HHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHH
Confidence 99999999999999976789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHH
Q 005751 478 DYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERI 553 (679)
Q Consensus 478 ~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Meri 553 (679)
+|+|++|++|+++ ++|++++ ++ ++.++++++||+|||++|+++ |.+|++|.||++||||||++++|||++|+||
T Consensus 515 e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~meri 592 (677)
T 2cg9_A 515 EFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQ-VEKVVVSYKLLDAPAAIRTGQFGWSANMERI 592 (677)
T ss_dssp CBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHHHHHHHHTTCSS-CSCEECCSSCSSSCEEEECCTTSCCHHHHHH
T ss_pred HhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHHHHHHHHhcCCc-ceEEEEeccCCCCCEEEEeCcccccHHHHHH
Confidence 9999999999999 8886433 22 456778999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCC-CCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005751 554 MQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD-PEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTV 632 (679)
Q Consensus 554 mk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d-~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~lL 632 (679)
|++|+++++.+.++|..+++|||||+||||++|..+...+ ++++.++++|+||||+|+|++|+.++||++|++|+|+||
T Consensus 593 mka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll 672 (677)
T 2cg9_A 593 MKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLI 672 (677)
T ss_dssp HTTCC-------------CEEEECTTCHHHHHHHHHHHTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTS
T ss_pred HHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Confidence 9999765444345678899999999999999999876554 456678999999999999999999999999999999999
Q ss_pred HhhcC
Q 005751 633 KSSLN 637 (679)
Q Consensus 633 ~~~L~ 637 (679)
..+||
T Consensus 673 ~~~l~ 677 (677)
T 2cg9_A 673 SLGLN 677 (677)
T ss_dssp SSSCC
T ss_pred HHhcC
Confidence 87664
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=5.7e-144 Score=1232.65 Aligned_cols=568 Identities=53% Similarity=0.944 Sum_probs=489.5
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC-----CCCCcccccccceeeeeeeccEEEEEe
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVIS 75 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-----~~~~~IGqFGIGf~S~FmVad~V~V~T 75 (679)
|+|.++.++++|+|+|||||||+++|.++|+|||+|||+.|+++++.+ .+..+||||||||||+||||++|+|+|
T Consensus 83 I~I~~d~~~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~S 162 (666)
T 2o1u_A 83 VKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTS 162 (666)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEE
Confidence 577888889999999999999999999999999999999999888753 467899999999999999999999999
Q ss_pred ecCCCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCC
Q 005751 76 KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 155 (679)
Q Consensus 76 k~~~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~ 155 (679)
|++++.++.|+++| |+|+|.+++.+...++||+|+|||+++..+|++.++|+++|++||+||++||++++.++.+
T Consensus 163 r~~~~~~~~W~s~g-g~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~---- 237 (666)
T 2o1u_A 163 KHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG---- 237 (666)
T ss_dssp ECTTSCCEEEEESS-SCCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC-------
T ss_pred eeCCCceEEEEEeC-CeEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecccccc----
Confidence 99977899999999 9999988643345689999999999999999999999999999999999999997642100
Q ss_pred CCCCCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhC
Q 005751 156 TDEDDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVK 235 (679)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~ 235 (679)
+ ++.+.+|+.+|+++|+|+|+|+++++|+|.+||+++++
T Consensus 238 --------------------------~---------------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~ 276 (666)
T 2o1u_A 238 --------------------------G---------------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSK 276 (666)
T ss_dssp ---------------------------------------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTC
T ss_pred --------------------------c---------------cccccceEEEecCccccccCcccccHHHHHHHHhhhcc
Confidence 0 00124789999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCC
Q 005751 236 DFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTL 315 (679)
Q Consensus 236 ~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DL 315 (679)
+| .+||+|+|+++||+++|+|+||+|+++|+++|.+.++..+++++||||||||+|+|++|||+||+||||||||+||
T Consensus 277 d~--~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dL 354 (666)
T 2o1u_A 277 ES--DDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDL 354 (666)
T ss_dssp TT--SCCSEEEEEEECSSSCEEEEEEECSSCCC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSS
T ss_pred cc--ccCeeEEEecccCcEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhC
Confidence 99 9999999999999999999999999999999864211246899999999999999999999999999999999999
Q ss_pred CCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHH-HHHHHHhHHhhhhccc
Q 005751 316 PLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYT-KFWNEFGKSIKLGIIE 394 (679)
Q Consensus 316 pLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~-kf~~~~~~~lK~G~~e 394 (679)
|||||||+||+|++|++||+.|++||+++|.+||++ +|. +||++||++||+|+++
T Consensus 355 plNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~e------------------------~y~~~f~~~f~~~lK~G~~~ 410 (666)
T 2o1u_A 355 PLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADE------------------------KYNDTFWKEFGTNIKLGVIE 410 (666)
T ss_dssp CSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSCHH------------------------HHHHTHHHHHHHHHHHHHHH
T ss_pred CCcccchhhccCHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999875 799 9999999999999999
Q ss_pred CHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHH
Q 005751 395 DAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQ 474 (679)
Q Consensus 395 D~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~ 474 (679)
|+.||++|++||||+||.++++++||++|++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||++
T Consensus 411 D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~l~~~iDe~~~~ 490 (666)
T 2o1u_A 411 DHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQ 490 (666)
T ss_dssp CGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHHTTCCCEEECSTHHHHHHH
T ss_pred CHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHHHHHHhCCceEEEeCCchHHHHHH
Confidence 99999999999999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhh-cCCCCccEEEEeecCCCCcEEEEecCCCchHH
Q 005751 475 YLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGA-LASENVDDVKVSNRLDNTPCVVVTSKYGWSAN 549 (679)
Q Consensus 475 ~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~-L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~ 549 (679)
+|.+|+|++|++|++++++|++++ ++ ++.++++++||+|||++ ||++ |++|++|+||++||||||++++|||++
T Consensus 491 ~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~ 569 (666)
T 2o1u_A 491 ALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGN 569 (666)
T ss_dssp TCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTT-EEEEEECSSCSSCSEEEEBCTTSCCHH
T ss_pred HHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCc-eeEEEEeecCCCCCeEEEecCcccCHH
Confidence 999999999999999999987543 22 45577899999999999 9999 999999999999999999999999999
Q ss_pred HHHHHHHhccc---chhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005751 550 MERIMQSQTLS---DASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFAS 626 (679)
Q Consensus 550 Merimk~q~~~---~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~ 626 (679)
|||||++|+++ ++++..+|..+++|||||+||||++|..+...+++++.++++|+||||+|+|++|+.++||+.|++
T Consensus 570 m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~~~~~l~d~All~~G~~~~dp~~f~~ 649 (666)
T 2o1u_A 570 MERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGD 649 (666)
T ss_dssp HHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred HHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhCCCCcccHHHHHH
Confidence 99999999762 222334578899999999999999999877666677889999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC
Q 005751 627 RIYSTVKSSLNISPD 641 (679)
Q Consensus 627 rln~lL~~~L~~~~~ 641 (679)
|+|+||..+|+++.+
T Consensus 650 r~~~ll~~~l~~~~~ 664 (666)
T 2o1u_A 650 RIERMLRLSLNIDPD 664 (666)
T ss_dssp HHHHHHHTTSCC---
T ss_pred HHHHHHHHhcCCCcc
Confidence 999999999988754
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=1.5e-137 Score=1176.30 Aligned_cols=547 Identities=39% Similarity=0.731 Sum_probs=476.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC--CCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~--~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|+|.+++++++|+|.|||+|||+++|.++|+|||+||++.|+++++.+ .+...||||||||||+||||++|+|+||++
T Consensus 65 I~I~~d~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~ 144 (624)
T 2ioq_A 65 VRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAA 144 (624)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECT
T ss_pred EEEEEeCCCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCC
Confidence 577888888999999999999999999999999999999999888642 467899999999999999999999999998
Q ss_pred C---CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCC
Q 005751 79 D---DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 155 (679)
Q Consensus 79 ~---~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~ 155 (679)
+ ..++.|+++|++.|++.+.+ ...+||+|+|||+++..+|++.++|+++|++||.||++||++... +.
T Consensus 145 ~~~~~~~~~w~s~g~~~~~i~~~~---~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~--e~---- 215 (624)
T 2ioq_A 145 GEKPENGVFWESAGEGEYTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--EE---- 215 (624)
T ss_dssp TSCGGGEEEEEECSSSCCEEEEEC---CSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE--EE----
T ss_pred CCCCCeeEEEEEeCCCeEEEEECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--cc----
Confidence 6 45899999999999998752 457999999999999999999999999999999999999999541 00
Q ss_pred CCCCCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhC
Q 005751 156 TDEDDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVK 235 (679)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~ 235 (679)
+ ++ + .+.+|+.+|+.+|+|+|+|+++++++|.+||+++++
T Consensus 216 ~----------------------------------~~--~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~ 255 (624)
T 2ioq_A 216 K----------------------------------DG--E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAH 255 (624)
T ss_dssp C----------------------------------SS--C----EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHT
T ss_pred c----------------------------------cc--c----cccceEEEeCCccceEecCccchHHHHHHHHHhhcc
Confidence 0 00 0 034789999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCC
Q 005751 236 DFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTL 315 (679)
Q Consensus 236 ~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DL 315 (679)
+| .+||+|+|+++||+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+||
T Consensus 256 d~--~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl 330 (624)
T 2ioq_A 256 DF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDL 330 (624)
T ss_dssp CC--SCCSCCEEEEEESSSCEEEEEECCSSCCGGGSSS---SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSS
T ss_pred ch--hcCeEEEEecccceEEEEEEEEeCCcCccchhhh---cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhC
Confidence 99 9999999999999999999999999999998865 557899999999999999999999999999999999999
Q ss_pred CCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccC
Q 005751 316 PLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIED 395 (679)
Q Consensus 316 pLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD 395 (679)
|||||||+||+|++|++||+.|++||+++|.+||++ +|++|.+||++||++||+|+++|
T Consensus 331 ~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D 389 (624)
T 2ioq_A 331 PLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAED 389 (624)
T ss_dssp CTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTHHHHC
T ss_pred CCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccC
Confidence 999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHhHHHHhccccceecCCCC--ceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHH
Q 005751 396 AANRNRLAKLLRFESTKSDG--KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLM 473 (679)
Q Consensus 396 ~~~~~~l~~ll~f~ts~~~~--~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i 473 (679)
+.||++|++||||+||.+++ +++||++|++|||++|+.|||+||++++++++|||+|.|++||+|||||++||||||+
T Consensus 390 ~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~ 469 (624)
T 2ioq_A 390 FANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMM 469 (624)
T ss_dssp CTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHT
T ss_pred HHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecCchHHHHH
Confidence 99999999999999998653 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceEeeccccccCCCC-c--ch--HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchH
Q 005751 474 QYLMDYEDKKFQNVSKEGLKLGKD-T--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSA 548 (679)
Q Consensus 474 ~~L~~~~gk~f~sV~~~~~~l~~~-e--k~--~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~ 548 (679)
++|.+|+|++|++|+++++++++. + ++ ++.++++++||+|||++|+++ |.+|++|.||+++|||||++++|||+
T Consensus 470 ~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~~~ 548 (624)
T 2ioq_A 470 NYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMST 548 (624)
T ss_dssp TTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSSS-SSEEEECCCCSSCCEEEECCC-----
T ss_pred HHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCC-ceEEEEeecCCCCcEEEEecCcCcCH
Confidence 999999999999999999997632 2 22 456778999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005751 549 NMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 628 (679)
Q Consensus 549 ~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rl 628 (679)
+|+|||++|+ +.++..+++|||||+||||++|.. ..+++.++++|+||||+|+|++|++++||+.|++|+
T Consensus 549 ~m~r~m~~~~------~~~~~~~~~LeiN~~hpli~~L~~----~~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~ 618 (624)
T 2ioq_A 549 QMAKLFAAAG------QKVPEVKYIFELNPDHVLVKRAAD----TEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRM 618 (624)
T ss_dssp ----------------------CCEEEECTTCHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred HHHHHHHHhh------hcccccCceEEECCCCHHHHHHHh----hcCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHH
Confidence 9999999874 224567999999999999999965 235677999999999999999999999999999999
Q ss_pred HHHHH
Q 005751 629 YSTVK 633 (679)
Q Consensus 629 n~lL~ 633 (679)
|+||.
T Consensus 619 ~~~l~ 623 (624)
T 2ioq_A 619 NQLLV 623 (624)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99985
No 4
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1.4e-122 Score=1011.62 Aligned_cols=413 Identities=48% Similarity=0.873 Sum_probs=367.3
Q ss_pred cceeeccccccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccC
Q 005751 202 FEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKAN 281 (679)
Q Consensus 202 ~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ 281 (679)
.+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ 86 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP--NKKRNN 86 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCC----C--CCCCCS
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCc--cCCceeEEEEecccceeeEEEecCCCCCcchhhh--hhhcCC
Confidence 379999999999999999999999999999999999 9999999999999999999999999999999863 145789
Q ss_pred eEEEEeeEEeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCc
Q 005751 282 LKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDK 361 (679)
Q Consensus 282 ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~ 361 (679)
|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+
T Consensus 87 ikLYv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~----------- 155 (444)
T 3hjc_A 87 IKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAE----------- 155 (444)
T ss_dssp EEEEETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred eeEEEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccccCCCccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCC
Q 005751 362 KDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGAN 441 (679)
Q Consensus 362 ~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s 441 (679)
++++|.+||++||.+||+|+++|+.||++|++||||+||.++++++||++|++|||++|+.|||+||+|
T Consensus 156 -----------d~e~Y~kFw~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s 224 (444)
T 3hjc_A 156 -----------NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDS 224 (444)
T ss_dssp -----------SHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSC
T ss_pred -----------CHHHHHHHHHHHhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCC
Confidence 588999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred HHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhh
Q 005751 442 KEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGA 517 (679)
Q Consensus 442 ~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~ 517 (679)
++++++|||+|.|++||||||||++||||||+++|.+|+|++|+||++++++|++.+ ++ ++.++++++||+|||++
T Consensus 225 ~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~ 304 (444)
T 3hjc_A 225 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEV 304 (444)
T ss_dssp HHHHHTCGGGHHHHHHTCCEEEECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHhCCcEEEEeCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986433 22 45677899999999999
Q ss_pred cCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCch
Q 005751 518 LASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDA 597 (679)
Q Consensus 518 L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~ 597 (679)
||++ |++|+||+||++||||||++++|||++|+|||++|+++++.+..+|..+++|||||+||||++|.++...+++++
T Consensus 305 L~~k-V~~V~vS~RL~~sP~~lv~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~ 383 (444)
T 3hjc_A 305 LGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDK 383 (444)
T ss_dssp HGGG-CSEEEECSSCSSSSEEEEBCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCH
T ss_pred hcCc-ceEEEecCCCCCCCeEEEcCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchH
Confidence 9999 999999999999999999999999999999999998765433456788999999999999999999888777888
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 005751 598 GVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPD 641 (679)
Q Consensus 598 ~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~lL~~~L~~~~~ 641 (679)
.++++|+||||+|+|++|+.++||+.|++|+|+||..+||++.+
T Consensus 384 ~~~~l~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 384 AVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEE 427 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999875
No 5
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=1.9e-122 Score=1006.51 Aligned_cols=412 Identities=50% Similarity=0.874 Sum_probs=356.7
Q ss_pred ccccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEee
Q 005751 209 DVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRR 288 (679)
Q Consensus 209 ~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~r 288 (679)
.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|+|||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrr 77 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--RKKKNNIKLYVRR 77 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC-----------CCEEEEETT
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCChheeeeccCCCeeeEEEEEccCCCchhhhhh--hhhccceeEEeee
Confidence 36799999999999999999999999999 9999999999999999999999999999999863 1457899999999
Q ss_pred EEeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccC
Q 005751 289 VFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFS 368 (679)
Q Consensus 289 VfI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~ 368 (679)
|||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +
T Consensus 78 VfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la-~----------------- 139 (448)
T 3q6m_A 78 VFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA-E----------------- 139 (448)
T ss_dssp EEEESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT-S-----------------
T ss_pred eEEecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH-h-----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcC
Q 005751 369 DDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKS 448 (679)
Q Consensus 369 ~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~s 448 (679)
++++|.+||++||.+||+|+++|+.||++|++||||+||.++++++||++|++|||++|+.|||++|+|++++++|
T Consensus 140 ----d~e~Y~~f~~~fg~~lK~Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~s 215 (448)
T 3q6m_A 140 ----DKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANS 215 (448)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTS
T ss_pred ----CHHHHHHHHHHHhHHHHhhhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhC
Confidence 7899999999999999999999999999999999999999877899999999999999999999999999999999
Q ss_pred hhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhhcCCCCcc
Q 005751 449 PFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVD 524 (679)
Q Consensus 449 P~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~L~d~~V~ 524 (679)
||+|.|++||||||||++||||||+++|.+|+|++|+||++++++|++++ ++ ++.++++++||+|||++||++ |+
T Consensus 216 p~lE~~k~kG~EVL~l~d~iDe~~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~k-V~ 294 (448)
T 3q6m_A 216 AFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKK-VE 294 (448)
T ss_dssp GGGHHHHHHTCCEEEECSTHHHHHTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGG-CS
T ss_pred hHHHHHHHCCCEEEEecCchHHHHHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCc-ce
Confidence 99999999999999999999999999999999999999999999986443 22 455678999999999999999 99
Q ss_pred EEEEeecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCCCCchhHHHHHH
Q 005751 525 DVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQ 604 (679)
Q Consensus 525 ~V~vS~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d~~~~~~~~la~ 604 (679)
+|++|+||++||||||++++|||++|+|||++|+++++.+.+++..++||||||+||||++|.++...+++++.++++|.
T Consensus 295 ~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~ 374 (448)
T 3q6m_A 295 KVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVI 374 (448)
T ss_dssp EEEECSSCSSSSEEEEECSSSCCHHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred EEEecCCCCCCCeEEEeCCcchhHHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999987655444567889999999999999999998877777889999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 005751 605 LIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAVEEE 647 (679)
Q Consensus 605 ~Lyd~AlL~~G~~ieDp~~f~~rln~lL~~~L~~~~~~~~~~~ 647 (679)
||||+|+|++|+.++||+.|++|||+||..+||++.++++.++
T Consensus 375 lLyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~ 417 (448)
T 3q6m_A 375 LLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADD 417 (448)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 9999999999999999999999999999999999988776543
No 6
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=3.5e-123 Score=1046.87 Aligned_cols=481 Identities=41% Similarity=0.779 Sum_probs=381.6
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC--CCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~--~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|+|.+++++++|+|.|||+|||+++|.++|+|||+||++.|+++++.+ .+...||||||||||+||||++|+|+||++
T Consensus 65 I~I~~d~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~ 144 (559)
T 1y4s_A 65 VRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAA 144 (559)
T ss_dssp EEEEEETTTTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECS
T ss_pred EEEEEeCCCcEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCC
Confidence 678888888999999999999999999999999999999998777532 367899999999999999999999999998
Q ss_pred C---CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCC
Q 005751 79 D---DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 155 (679)
Q Consensus 79 ~---~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~ 155 (679)
+ ..++.|++.|++.|++.+.+ ..++||+|+|||+++..+|++.++|+++|++||.||++||.+... + .
T Consensus 145 ~~~~~~~~~w~s~g~~~~~i~~~~---~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~--e----~ 215 (559)
T 1y4s_A 145 GEKPENGVFWESAGEGEYTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--E----E 215 (559)
T ss_dssp SSCGGGEEEEEECSSSEEEEEEEC---CCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE--E----C
T ss_pred CCCCCeeEEEEEeCCCeeEEeECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--c----c
Confidence 6 45899999999999998752 457999999999999999999999999999999999999999641 0 0
Q ss_pred CCCCCCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeeccccccccccCCCCCCHHHHHHHHHhhhC
Q 005751 156 TDEDDSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVK 235 (679)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN~~~~lW~r~~~~it~eey~~Fyk~~~~ 235 (679)
++ + + .+.+|+.+|+.+|+|+|+|+++++++|.+||+++++
T Consensus 216 ~~------------------------~------------~----~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~ 255 (559)
T 1y4s_A 216 KD------------------------G------------E----TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAH 255 (559)
T ss_dssp ST------------------------T------------S----CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHT
T ss_pred cc------------------------c------------c----cccceEEEeCCccceecCcccccHHHHHHHHHhhhh
Confidence 00 0 0 024789999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeEEeecCccccchhccccccceecCCCC
Q 005751 236 DFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTL 315 (679)
Q Consensus 236 ~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yl~FvkGVVDS~DL 315 (679)
+| .+||+|+|+++||+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+||
T Consensus 256 d~--~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl 330 (559)
T 1y4s_A 256 DF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDL 330 (559)
T ss_dssp CS--SCEEEEEEECCCSSSCEEEEEEEESSCCTTCSSS---SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSS
T ss_pred hh--hcCeEEEEeccCCceEEEEEEEcCCcCcchhhhh---cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhC
Confidence 99 9999999999999999999999999999998865 567899999999999999999999999999999999999
Q ss_pred CCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCccchhhHHHHHHHHhHHhhhhcccC
Q 005751 316 PLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIED 395 (679)
Q Consensus 316 pLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~e~y~kf~~~~~~~lK~G~~eD 395 (679)
|||||||+||+|++|++||+.|++||+++|.+||++ +|++|.+||++||++||+|+++|
T Consensus 331 plNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D 389 (559)
T 1y4s_A 331 PLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAED 389 (559)
T ss_dssp CTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTSTTTC
T ss_pred CCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccC
Confidence 999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHhHHHHhccccceecCCCC--ceeCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHH
Q 005751 396 AANRNRLAKLLRFESTKSDG--KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLM 473 (679)
Q Consensus 396 ~~~~~~l~~ll~f~ts~~~~--~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i 473 (679)
+.||++|++||||+||.+++ +++||++|++|||++|+.|||+||+|++++++|||+|.|++||+|||||++||||+|+
T Consensus 390 ~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~ 469 (559)
T 1y4s_A 390 FANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMM 469 (559)
T ss_dssp GGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHH
T ss_pred HHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecChHHHHHH
Confidence 99999999999999998653 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceEeeccccccCCCC-c--ch--HHhHHHHHHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchH
Q 005751 474 QYLMDYEDKKFQNVSKEGLKLGKD-T--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSA 548 (679)
Q Consensus 474 ~~L~~~~gk~f~sV~~~~~~l~~~-e--k~--~~~~~e~~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~ 548 (679)
++|.+|+|++|++|+++++++++. + ++ ++.++++++||+|||++|+++ |.+|++|+||++||||||++++|||+
T Consensus 470 ~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~-v~~V~~s~rl~~sp~~~v~~~~~~~~ 548 (559)
T 1y4s_A 470 NYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMST 548 (559)
T ss_dssp HHCCCCSSSCCBCC------------------------------------------------------------------
T ss_pred HHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCC-ceEEEEeccCCCCCEEEEeCCCCcCH
Confidence 999999999999999999997642 2 22 455778999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005751 549 NMERIMQSQ 557 (679)
Q Consensus 549 ~Merimk~q 557 (679)
+|+|||++|
T Consensus 549 ~m~~~~~~~ 557 (559)
T 1y4s_A 549 QMAKLFAAA 557 (559)
T ss_dssp ---------
T ss_pred HHHHHHHhc
Confidence 999999987
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-117 Score=967.18 Aligned_cols=400 Identities=49% Similarity=0.861 Sum_probs=375.0
Q ss_pred cccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeE
Q 005751 210 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 289 (679)
Q Consensus 210 ~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rV 289 (679)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrrV 76 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSS--CCCCCCCEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCC--cCCeeEEEeccCCCcceeEEEEecCCCchhhhhh--hhccCCeEEEEeee
Confidence 4699999999999999999999999999 9999999999999999999999999999999874 13468999999999
Q ss_pred EeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 005751 290 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 369 (679)
Q Consensus 290 fI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~ 369 (679)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|++
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~------------------ 138 (405)
T 2cge_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED------------------ 138 (405)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------
T ss_pred EecCchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999975
Q ss_pred CccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 005751 370 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 449 (679)
Q Consensus 370 ~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP 449 (679)
+++|.+||++||.+||+||++|+.||++|++||||+||.++++++||++|++|||++|+.|||+||++++++++||
T Consensus 139 ----~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp 214 (405)
T 2cge_A 139 ----SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (405)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCT
T ss_pred ----HHHHHHHHHHhhhhhcchhccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCh
Confidence 6799999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred hHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhhcCCCCccE
Q 005751 450 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDD 525 (679)
Q Consensus 450 ~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~L~d~~V~~ 525 (679)
|+|.|++||||||||++||||+|+++|.+|+|++|++|+++ ++|++.+ ++ ++.++++++|++|||++||++ |.+
T Consensus 215 ~~E~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~-v~~ 292 (405)
T 2cge_A 215 FLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQ-VEK 292 (405)
T ss_dssp THHHHHHHTCCEEEECSHHHHHHHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CSE
T ss_pred HHHHHHhCCCEEEEecCchHHHHHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCc-ceE
Confidence 99999999999999999999999999999999999999999 8886433 22 445778999999999999999 999
Q ss_pred EEEeecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHHHhhcCC-CCchhHHHHHH
Q 005751 526 VKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD-PEDAGVQQTAQ 604 (679)
Q Consensus 526 V~vS~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~~~~~~d-~~~~~~~~la~ 604 (679)
|++|.||++||||||++++|||++|+|||++|+++++.+..++..+++|||||+||||++|..+...+ ++++.++++|+
T Consensus 293 V~~s~rl~~sP~~lv~~~~~~s~~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~ 372 (405)
T 2cge_A 293 VVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTK 372 (405)
T ss_dssp EEECSSCCSSSEEEEECSSSCCHHHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHH
T ss_pred EEEEeccCCCCeEEEeccccccHHHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHH
Confidence 99999999999999999999999999999999766444444567899999999999999999876554 45678999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q 005751 605 LIYQTALMESGFSLNDPKDFASRIYSTVKSSLN 637 (679)
Q Consensus 605 ~Lyd~AlL~~G~~ieDp~~f~~rln~lL~~~L~ 637 (679)
||||+|+|++|+.++||++|++|+|+||..+||
T Consensus 373 ~Lyd~AlL~~G~~~~dp~~f~~r~~~ll~~~l~ 405 (405)
T 2cge_A 373 LLYETALLTSGFSLDEPTSFASRINRLISLGLN 405 (405)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998875
No 8
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=1.6e-91 Score=730.64 Aligned_cols=289 Identities=42% Similarity=0.787 Sum_probs=248.0
Q ss_pred cccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeE
Q 005751 210 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 289 (679)
Q Consensus 210 ~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rV 289 (679)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ..+++|+||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~---~~~~~ikLYvrrV 76 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRV 76 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCC--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST---TCCCSEEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCc--cCcceeEEeccccccceeEEEEecCCCCchhhhh---hccCCeEEEEece
Confidence 4799999999999999999999999999 9999999999999999999999999999999875 4578999999999
Q ss_pred EeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 005751 290 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 369 (679)
Q Consensus 290 fI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~ 369 (679)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||++
T Consensus 77 fI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~------------------ 138 (303)
T 2gq0_A 77 FIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD------------------ 138 (303)
T ss_dssp EEEEEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred EeecchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCC--CceeCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 005751 370 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSD--GKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 447 (679)
Q Consensus 370 ~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~--~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~ 447 (679)
+|++|.+||++||.+||+|+++|+.||++|++||||+||.++ ++++||++|++|||++|+.|||++|+|++++++
T Consensus 139 ---d~e~Y~kF~~~fg~~lK~Gi~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 215 (303)
T 2gq0_A 139 ---DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 215 (303)
T ss_dssp ---CHHHHHHHHHHHHHHHTTHHHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhc
Confidence 899999999999999999999999999999999999999865 479999999999999999999999999999999
Q ss_pred ChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCcchHHhHHHHHHHHHHHHhhcCCCCcc--E
Q 005751 448 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVD--D 525 (679)
Q Consensus 448 sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~ek~~~~~~e~~~L~~~lK~~L~d~~V~--~ 525 (679)
|||+|.|++||+|||||++||||+|+++|.+|+|++|++|++++++|++.+ ++.||++ |. +
T Consensus 216 sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~~----------------~~~l~~~-~~~~~ 278 (303)
T 2gq0_A 216 SPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLA----------------DGDLGTL-VPRGS 278 (303)
T ss_dssp CGGGHHHHHHTCCEEEECSTTHHHHTTTCCEETTEEEEETTC--------------------------------------
T ss_pred ChHHHHHHHCCCeEEEeCchhHHHHHHHHHhcCCcceEEeeccccCccccc----------------hhhhccc-cccCC
Confidence 999999999999999999999999999999999999999999999886222 3566777 88 8
Q ss_pred EEEeecCCCCcEEEEe
Q 005751 526 VKVSNRLDNTPCVVVT 541 (679)
Q Consensus 526 V~vS~RL~~sPa~lv~ 541 (679)
|.+|+||++||||+++
T Consensus 279 ~~~~~~~~s~~~~~~~ 294 (303)
T 2gq0_A 279 MAISDPNSSSVDKLAA 294 (303)
T ss_dssp ----------------
T ss_pred ccccCcCCcchHHHHH
Confidence 9999999999999986
No 9
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=2.8e-91 Score=724.30 Aligned_cols=284 Identities=49% Similarity=0.878 Sum_probs=240.4
Q ss_pred cccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEeeE
Q 005751 210 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 289 (679)
Q Consensus 210 ~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~rV 289 (679)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|.+ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ikLYvrrV 76 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSS--CCCCCCCEEEETTE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCc--ccCeeEEEEeccCCceeEEEEEecCCCcchhhhh--hhccCCeEEEEeee
Confidence 4699999999999999999999999999 9999999999999999999999999999999875 23468999999999
Q ss_pred EeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 005751 290 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 369 (679)
Q Consensus 290 fI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~~~ 369 (679)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~------------------- 137 (288)
T 1hk7_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE------------------- 137 (288)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred EeecchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999985
Q ss_pred CccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 005751 370 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 449 (679)
Q Consensus 370 ~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~sP 449 (679)
++++|.+||++||.+||+|+++|+.||++|++||||+||.++++++||++|++||+++|+.|||+||+|++++++||
T Consensus 138 ---d~e~Y~kf~~~fg~~lK~Gi~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp 214 (288)
T 1hk7_A 138 ---DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (288)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCG
T ss_pred ---CHHHHHHHHHHHhHHHhhhhcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCH
Confidence 48899999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred hHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCCCc--ch--HHhHHHHHHHHHHHHhhcCC
Q 005751 450 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALAS 520 (679)
Q Consensus 450 ~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~~e--k~--~~~~~e~~~L~~~lK~~L~d 520 (679)
|+|.|++||+|||||++||||+|+++|.+|+|++|+||+++ ++|++++ ++ ++.++++++||+|||++||+
T Consensus 215 ~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 215 FLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp GGHHHHTTTCCCEEECSHHHHHHHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHHHHHHCCCEEEEecCchHHHHHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999998 8886432 22 44567899999999999985
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=1.9e-88 Score=697.59 Aligned_cols=263 Identities=51% Similarity=0.954 Sum_probs=249.0
Q ss_pred cccccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEe
Q 005751 208 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 287 (679)
Q Consensus 208 N~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~ 287 (679)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+|+++||+++|+||||||+++|+++|++ ...+++|+||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~ 76 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYVR 76 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCCEEEEET
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCchheeeecccCCeeEEEEEEccCCCchhhhhh--hhhcCCeeEEEE
Confidence 457899999999999999999999999999 9999999999999999999999999999999864 245789999999
Q ss_pred eEEeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 005751 288 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 367 (679)
Q Consensus 288 rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~ 367 (679)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +
T Consensus 77 rVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la-~---------------- 139 (268)
T 3pry_A 77 RVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA-E---------------- 139 (268)
T ss_dssp TEEEESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-T----------------
T ss_pred EEEeecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-h----------------
Confidence 99999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 005751 368 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 447 (679)
Q Consensus 368 ~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~ 447 (679)
++++|++||++||.+||+|+++|..||++|++||||+||.++++++||++|++|||++|+.|||+||+|++++++
T Consensus 140 -----d~e~Y~~f~~~fg~~lK~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~ 214 (268)
T 3pry_A 140 -----DKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVAN 214 (268)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHT
T ss_pred -----CHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHh
Confidence 789999999999999999999999999999999999999977789999999999999999999999999999999
Q ss_pred ChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccccccCCC
Q 005751 448 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK 496 (679)
Q Consensus 448 sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~~~~l~~ 496 (679)
|||+|.|++||+|||+|++||||+|+++|.+|+|++|+||++++++|++
T Consensus 215 sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 215 SAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp CHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred ChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeecccccCCCcc
Confidence 9999999999999999999999999999999999999999999999863
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=4.3e-88 Score=692.96 Aligned_cols=257 Identities=51% Similarity=0.938 Sum_probs=241.0
Q ss_pred cccccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEe
Q 005751 208 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 287 (679)
Q Consensus 208 N~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~ 287 (679)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+|+++||+++|+||||||+++|+++|++ ...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvr 76 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVR 76 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC------CCEEEEET
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCc--cCCeeEEEeeccCcceeEEEEEecCCCchhhhhh--hhccCCeEEEEe
Confidence 789999999999999999999999999999 9999999999999999999999999999999874 134689999999
Q ss_pred eEEeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 005751 288 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 367 (679)
Q Consensus 288 rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~ 367 (679)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|++
T Consensus 77 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d---------------- 140 (260)
T 1usu_A 77 RVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED---------------- 140 (260)
T ss_dssp TEEEESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred eeEeccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 005751 368 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 447 (679)
Q Consensus 368 ~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~ 447 (679)
+++|.+||++||.+||+||++|+.||++|++||||+||.++++++||++|++|||++|+.|||+||+|++++++
T Consensus 141 ------~e~y~~f~~~fg~~lK~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 214 (260)
T 1usu_A 141 ------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEK 214 (260)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHT
T ss_pred ------HHHHHHHHHHHhhhhcchhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 67999999999999999999999999999999999999876679999999999999999999999999999999
Q ss_pred ChhHHHHHhcCcEEEEeCCCChHHHHHHhhhcCCCceEeeccc
Q 005751 448 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 490 (679)
Q Consensus 448 sP~lE~~k~kg~eVL~l~dpiDE~~i~~L~~~~gk~f~sV~~~ 490 (679)
|||+|.|++||+|||||++||||+|+++|.+|+|++|+||+++
T Consensus 215 sp~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 215 SPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp CTTHHHHHHTTCCEEEECSHHHHHHHHHHCEETTEEEEETTCC
T ss_pred ChHHHHHHhCCCeEEEeCCchHHHHHHHHHhhCCceEEecccc
Confidence 9999999999999999999999999999999999999999997
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=1.4e-86 Score=685.23 Aligned_cols=261 Identities=40% Similarity=0.786 Sum_probs=234.3
Q ss_pred cccccccccCCCCCCHHHHHHHHHhhhCCCCCCCCceeeeeeeccceeeEEEEEecCCCCcChhhhhhcccccCeEEEEe
Q 005751 208 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 287 (679)
Q Consensus 208 N~~~~lW~r~~~~it~eey~~Fyk~~~~~~~~~~pL~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~~~ikLYv~ 287 (679)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+|+++||+++|+||||||+++|+++|.+++...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvr 78 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAY--DDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVK 78 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCC--SCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEET
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCc--cCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEe
Confidence 788999999999999999999999999999 999999999999999999999999999999876544455789999999
Q ss_pred eEEeecCccccchhccccccceecCCCCCCccchhhhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 005751 288 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 367 (679)
Q Consensus 288 rVfI~d~~~~llP~yl~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~I~k~l~kkvl~~l~~la~~~~~~~~~~~~~~~~~~ 367 (679)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|++
T Consensus 79 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~---------------- 142 (263)
T 1y6z_A 79 RVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKET---------------- 142 (263)
T ss_dssp TEEEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred eeEeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCceeCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 005751 368 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 447 (679)
Q Consensus 368 ~~~~~~~e~y~kf~~~~~~~lK~G~~eD~~~~~~l~~ll~f~ts~~~~~~~sl~eY~~rmke~qk~IYY~t~~s~~~~~~ 447 (679)
+|++|.+||++||.+||+||++|+.|+++|++||||+||.++++++||++|++|||++|+.|||++|++++++++
T Consensus 143 -----d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 217 (263)
T 1y6z_A 143 -----GGDKWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQN 217 (263)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred -----hHHHHHHHHHHHhHHHccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 899999999999999999999999999999999999999876689999999999999999999999999999999
Q ss_pred ChhHHHHHhcCcEEEEeCCCChHHHHHHh--hhcCCCceEeecccc
Q 005751 448 SPFLERLKKKNYEVIFFTDPVDEYLMQYL--MDYEDKKFQNVSKEG 491 (679)
Q Consensus 448 sP~lE~~k~kg~eVL~l~dpiDE~~i~~L--~~~~gk~f~sV~~~~ 491 (679)
|||+|.|++||+|||+|++||||+|+++| .+|+|++|+||++++
T Consensus 218 sp~~E~~~~kg~EVL~l~~~iDe~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 218 SPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp CGGGHHHHHHTCCCEEECSHHHHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred CcHHHHHHhCCCeEEEeCCcHHHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999999999999999999999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=1.6e-45 Score=382.41 Aligned_cols=197 Identities=50% Similarity=0.811 Sum_probs=165.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhc-CCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~-~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+|+++++|+|.|||||||+++|.++|||||+||++.|+++++. +.+..+|||||||||||||||++|+|+||+++
T Consensus 84 I~I~~d~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~ 163 (281)
T 3peh_A 84 IRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNND 163 (281)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTT
T ss_pred EEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCC
Confidence 57788999999999999999999999999999999999999999975 45678999999999999999999999999998
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCCCCCC
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDED 159 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~~~~~ 159 (679)
+.+|.|+|+|+|+|+|.+++.+++..+||+|+|||++++.+|+++++|++||++||+||+|||+++..+..+.+++++++
T Consensus 164 ~~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~ 243 (281)
T 3peh_A 164 DEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIA 243 (281)
T ss_dssp SCCEEEEEETTSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHH
T ss_pred CCEEEEEECCCccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchh
Confidence 78999999999999999876556789999999999999999999999999999999999999999998877766554221
Q ss_pred CCchHHHHhhhhhhhhcccCCCcccccccccCCCcccccccccceeecc
Q 005751 160 DSSDEEEKAEKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 208 (679)
Q Consensus 160 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iN 208 (679)
+ + +.+..+++++ ++++++ ++++++|++++.+++|+.+|
T Consensus 244 ~----~-----~~~~~~~~~~-e~~~~~-~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 244 K----D-----MVNDPNYDSV-KVEETD-DPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp H----H-----HTTCTTSSEE-EECCCC-CTTCCEEEEEEEEEEEEECC
T ss_pred h----h-----cccccccccc-cccccc-ccccCCcceEEEEEEeEecC
Confidence 0 0 0001122222 222222 34456788999999999998
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=8.3e-42 Score=354.54 Aligned_cols=198 Identities=54% Similarity=0.941 Sum_probs=145.6
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC-----CCCCcccccccceeeeeeeccEEEEEe
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVIS 75 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-----~~~~~IGqFGIGf~S~FmVad~V~V~T 75 (679)
|+|.+|.+.++|+|.|||+|||+++|.++|+|||+||++.|+++++.+ .+..+||||||||||+||||++|+|+|
T Consensus 66 I~i~~d~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~S 145 (269)
T 1qy5_A 66 VKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTS 145 (269)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEE
T ss_pred EEEEEcCCceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEE
Confidence 567778888999999999999999999999999999999999988753 567899999999999999999999999
Q ss_pred ecCCCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCC
Q 005751 76 KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 155 (679)
Q Consensus 76 k~~~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~ 155 (679)
|++++.+|.|.++| |.|+|...+.+....+||+|+|||+++..+|++.++|+++|++||.||+|||++++.++.+++++
T Consensus 146 k~~~~~~~~w~s~g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~ 224 (269)
T 1qy5_A 146 KHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEP 224 (269)
T ss_dssp ECTTSCCEEEEECS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC------
T ss_pred EecCCcEEEEEEeC-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccC
Confidence 99977899999999 99999986433456899999999999999999999999999999999999999999887766665
Q ss_pred CCCCCCchHHHHhhhhhhhhcccCCCccccc-ccccCCCcccccccccceeecc
Q 005751 156 TDEDDSSDEEEKAEKEEETEKSESESEDEDE-DSEKKPKTKTVKETTFEWELLN 208 (679)
Q Consensus 156 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~iN 208 (679)
++++++++++ +++..+.++ +++ +++++++++++++.+++|+.+|
T Consensus 225 ~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 225 MEEEEAAKEE-----KEDSDDEAA----VEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp --------------------------------------------CCCEEEEECC
T ss_pred ccchhhhhhc-----ccccccccc----cccccccccccCCceEEEEeeeEecC
Confidence 5443211100 000011111 121 1223466788899999999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=2e-41 Score=345.47 Aligned_cols=145 Identities=57% Similarity=0.978 Sum_probs=134.9
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC-CCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+|+++++|+|+|||||||+++|.++|||||+||++.|+++++.+ .+..+|||||||||||||||++|+|+|| .+
T Consensus 121 I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk-~d 199 (272)
T 3ied_A 121 IKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK-KE 199 (272)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-SS
T ss_pred EEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-CC
Confidence 688999999999999999999999999999999999999999999865 5788999999999999999999999999 66
Q ss_pred CCceEEEeCCCCcEEEEeCC-----CCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEee
Q 005751 80 DKQYVWESKADGAFAISEDT-----WNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWA 146 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~-----~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~ 146 (679)
+++|.|+|+|+|+|+|.+++ .+++.++||+|+||||+++.+|+++++|+++|++||+||+|||+++.
T Consensus 200 d~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~fi~~PI~l~~ 271 (272)
T 3ied_A 200 DQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEFIKFPIEIWS 271 (272)
T ss_dssp SCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCCSCEEECC
T ss_pred CceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHhCCCCCeEEEe
Confidence 78999999999999999875 34568999999999999999999999999999999999999999974
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=2e-40 Score=337.75 Aligned_cols=148 Identities=57% Similarity=0.983 Sum_probs=138.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.+|+++++|+|.|||+|||+++|.++|++||+||++.|+++++.+.+..+||||||||||||||||+|+|+||++++
T Consensus 77 I~I~~d~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~ 156 (239)
T 3nmq_A 77 IDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDD 156 (239)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS
T ss_pred EEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCC
Confidence 57778889999999999999999999999999999999999999986567889999999999999999999999999888
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeeccc
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKE 149 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~ 149 (679)
++|.|+|+|+|+|+|.+++ +++..+||+|+|||++++.+|+++++|+++|++||+||+|||+++.+++
T Consensus 157 ~~~~W~s~~~g~fti~~~~-~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~ 224 (239)
T 3nmq_A 157 EQYAWESSAGGSFTVRADH-GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKE 224 (239)
T ss_dssp CCEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSC
T ss_pred ceeEEEECCCCcEEEEecC-CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeee
Confidence 8999999999999999864 4567899999999999999999999999999999999999999987653
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=1.8e-35 Score=304.13 Aligned_cols=154 Identities=57% Similarity=0.983 Sum_probs=135.3
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.+|.+.++|+|.|||+|||+++|..+|++||.||++.|++.++.+.+...|||||+||||+|||||+|+|.||++++
T Consensus 98 I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~ 177 (256)
T 3o0i_A 98 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD 177 (256)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS
T ss_pred EEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCC
Confidence 56777888999999999999999999999999999999999998864456789999999999999999999999999877
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccCC
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 155 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~~ 155 (679)
.+|.|++.|++.|+|.+++ +...++||+|+|+||.+..+|++.++|+++|++||+||+|||+++..++.+++++
T Consensus 178 ~g~~w~s~gg~~~~v~~~~-~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~ 251 (256)
T 3o0i_A 178 EQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 251 (256)
T ss_dssp CEEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC--------
T ss_pred ceEEEEEeccceEEEeeCC-CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCC
Confidence 8999999999999999864 3456899999999999999999999999999999999999999998775554443
No 18
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1.5e-34 Score=295.17 Aligned_cols=147 Identities=59% Similarity=0.993 Sum_probs=119.3
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC-----CCCCcccccccceeeeeeeccEEEEEe
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVIS 75 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~-----~~~~~IGqFGIGf~S~FmVad~V~V~T 75 (679)
|+|.++.+.++|+|.|||+|||+++|.++|++||.||++.|+++++.. .+...||||||||||+||||++|+|.|
T Consensus 70 I~i~~d~~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~S 149 (236)
T 2gqp_A 70 VKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTS 149 (236)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEE
Confidence 567778888999999999999999999999999999999998887643 456799999999999999999999999
Q ss_pred ecCCCCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecc
Q 005751 76 KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASK 148 (679)
Q Consensus 76 k~~~~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~ 148 (679)
|+.++.++.|.++| |.|++.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+||+|||++++.+
T Consensus 150 r~~~~~~~~w~~~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 150 KHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp ECTTSCCEEEEESS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred eCCCCceEEEEEeC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 99877789999999 9999987642234679999999999999999999999999999999999999998753
No 19
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=2.3e-34 Score=292.24 Aligned_cols=153 Identities=58% Similarity=0.989 Sum_probs=134.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.++.+.++|+|.|||+|||+++|..+|++||.||++.|.+.++.+.+...|||||+||||+||||++|+|.||+.++
T Consensus 70 I~I~~d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~ 149 (228)
T 3t0h_A 70 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD 149 (228)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS
T ss_pred EEEEEeCCeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCC
Confidence 45667888899999999999999999999999999999999888864456789999999999999999999999999877
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccccccC
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDV 154 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~~~~~ 154 (679)
.+|.|++.|++.|++.+.+ ....++||+|+|+||++..+|++.++|+++|++||+||+|||+++..++.++++
T Consensus 150 ~~~~w~~~g~~~~~v~~~~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~ 222 (228)
T 3t0h_A 150 EQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEV 222 (228)
T ss_dssp CEEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC-------
T ss_pred CcEEEEEcCCceEEEeecC-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccC
Confidence 7999999999999999864 235689999999999999999999999999999999999999998876554443
No 20
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.98 E-value=1e-32 Score=255.62 Aligned_cols=115 Identities=25% Similarity=0.410 Sum_probs=104.8
Q ss_pred HHHHHHHHhhcCCCCccEEEEeecCCCCcEEEEecCCCchHHHHHHHHHhcccchhhhhhccCCceEEeCCCCHHHHHHH
Q 005751 508 KELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELR 587 (679)
Q Consensus 508 ~~L~~~lK~~L~d~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimk~q~~~~~~~~~~~~~kkvLEINp~HPlIk~L~ 587 (679)
-.+++|||++||++ |++|++|+||++||||||++++|||++|||||++|. +.++..+++|||||+||||++|.
T Consensus 11 ~~~~~~~K~~L~dk-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~------~~~~~~k~~LEINp~HplIk~L~ 83 (126)
T 1sf8_A 11 GSFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG------QKVPEVKYIFELNPDHVLVKRAA 83 (126)
T ss_dssp -CHHHHHHHHHGGG-SSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTT------SCCCCCCCEEEECTTSHHHHHHH
T ss_pred hHHHHHHHHHhcCc-ccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhc------cccccCCeeeeECCCCHHHHHHH
Confidence 35899999999999 999999999999999999999999999999999874 22456899999999999999997
Q ss_pred HhhcCCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 005751 588 ERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVK 633 (679)
Q Consensus 588 ~~~~~d~~~~~~~~la~~Lyd~AlL~~G~~ieDp~~f~~rln~lL~ 633 (679)
+. .+++.++++|+||||+|+|++|+.++||+.|++|+|+||.
T Consensus 84 ~~----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 84 DT----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp HC----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred Hh----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 63 3567799999999999999999999999999999999985
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.98 E-value=1.9e-32 Score=283.75 Aligned_cols=149 Identities=58% Similarity=0.995 Sum_probs=133.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.++.+.++|+|.|||+|||+++|.++|++||.||++.|+++++...+...||+|||||||+||+|++|+|.||+.++
T Consensus 106 I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~ 185 (264)
T 1yc1_A 106 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD 185 (264)
T ss_dssp EEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS
T ss_pred EEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCC
Confidence 34555777899999999999999999999999999999999988875556789999999999999999999999999877
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeecccc
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEV 150 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~~ 150 (679)
.++.|.+.+++.|++.+.+ .....+||+|+|+|+++..+|++.++|+++|++||.||+|||+++++++.
T Consensus 186 ~~~~w~~~~~~~~~i~~~~-~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~ 254 (264)
T 1yc1_A 186 EQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER 254 (264)
T ss_dssp CCEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC--
T ss_pred ceEEEEEcCCceEEEeecC-CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeecccc
Confidence 7899999999999998853 23467999999999999999999999999999999999999999886543
No 22
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.97 E-value=5.5e-32 Score=273.35 Aligned_cols=149 Identities=57% Similarity=0.966 Sum_probs=133.8
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|+|.++.+..+|+|.|||+||++++|.++|++||.||++.|+++++...+...||||||||||+||+|++|+|.||+.++
T Consensus 64 I~i~~~~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~ 143 (220)
T 2wer_A 64 IRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD 143 (220)
T ss_dssp EEEEEEGGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCC
Confidence 34556677889999999999999999999999999999999988875557789999999999999999999999999877
Q ss_pred CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEeeccc
Q 005751 81 KQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKE 149 (679)
Q Consensus 81 ~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~~~~ 149 (679)
.++.|.+++++.|++.+.+......+||+|+|+|+++..+|++.++++++|++||.|+++||+++.++.
T Consensus 144 ~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~ 212 (220)
T 2wer_A 144 EQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKE 212 (220)
T ss_dssp CCEEEEECSSSEEEEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCC
T ss_pred ceeEEEeCCCCceEeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 799999999999999875322356799999999999999999999999999999999999999987653
No 23
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.95 E-value=2.6e-28 Score=249.04 Aligned_cols=143 Identities=43% Similarity=0.817 Sum_probs=126.5
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcC--CCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~--~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|+|.++.++.+|+|.|||+||++++|..+|++||.||++.|++.++.. .+...+|+|||||||+||+|++|+|.||+.
T Consensus 85 I~i~~~~~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~ 164 (235)
T 2ior_A 85 VRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAA 164 (235)
T ss_dssp EEEEEETTTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECT
T ss_pred EEEEEcCCceEEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecC
Confidence 456677788899999999999999999999999999999998766411 235799999999999999999999999998
Q ss_pred C---CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcCCCceeEEEee
Q 005751 79 D---DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWA 146 (679)
Q Consensus 79 ~---~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~fi~~pI~i~~ 146 (679)
+ ..++.|.+++++.|++.+.. ...+||+|+|+|+++..+|++..+++++|++||.|+++||+++.
T Consensus 165 ~~~~~~~~~w~~~~~~~~~i~~~~---~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 165 GEKPENGVFWESAGEGEYTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp TSCGGGEEEEEECSSSEEEEEEEC---CCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred CCCCceeEEEEecCCCcEEEeeCC---CCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 5 34899999999999998742 45799999999999999999999999999999999999999974
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.43 E-value=1.6e-13 Score=146.41 Aligned_cols=127 Identities=17% Similarity=0.345 Sum_probs=90.5
Q ss_pred CEEEecCCC-CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~-~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.++.++ ..|+|.|||+||+++++...+.+.+.|-...+ +.+. ....+|+||+|++|++++| +|+|+||+.+
T Consensus 44 I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~-~d~~---~~~~~G~~G~gl~si~~vs-~l~v~s~~~~ 118 (333)
T 1b63_A 44 IDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASL-DDLE---AIISLGFRGEALASISSVS-RLTLTSRTAE 118 (333)
T ss_dssp EEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSH-HHHH---TCCSSCCSSCHHHHHHTTS-EEEEEEECTT
T ss_pred EEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCcccc-chhh---hccccCccccchhhhhcCC-cEEEEEecCC
Confidence 456665543 69999999999999999999988875522222 1221 2457899999999999999 8999999975
Q ss_pred C-CceEEEeCCCC-cEEEEeCCCCCCCCCceEEEEE-ec---cccccccc-----hHHHHHHHHHhcC
Q 005751 80 D-KQYVWESKADG-AFAISEDTWNEPLGRGTEIRLH-LR---DEAGEYLE-----ESKLKELVKKYSE 136 (679)
Q Consensus 80 ~-~~~~w~s~g~~-~y~i~~~~~~~~~~~GT~I~L~-lk---~~~~e~l~-----~~~~~~li~kys~ 136 (679)
+ .+|.|..+|.. .+++.+. ..++||+|+++ |- +....|+. -.++.+++++|+-
T Consensus 119 ~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al 182 (333)
T 1b63_A 119 QQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182 (333)
T ss_dssp CSSEEEEEEETTTTEEEEEEE----CCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCcceEeeecc----cCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhc
Confidence 4 47778777765 4555543 24689999998 11 11122322 2678899999985
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.06 E-value=1e-10 Score=126.36 Aligned_cols=130 Identities=17% Similarity=0.237 Sum_probs=86.6
Q ss_pred CEEEecC-CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~-~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|.|.+.. +...|+|.|||+||+++++...+...+.|.... ..+.......|++|+|++|+++|| +|+|+||+.+
T Consensus 54 I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~----~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~ 128 (365)
T 1h7s_A 54 IDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQE----FADLTQVETFGFRGEALSSLCALS-DVTISTCHAS 128 (365)
T ss_dssp EEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTT
T ss_pred EEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhcccccccc----ccchhcccccCCCCchhhhhhhhc-cEEEEEccCC
Confidence 4566643 346999999999999999998887766542111 110011234799999999999999 9999999975
Q ss_pred C-CceEEEeCCCCcEEEEeCCCCCCCCCceEEEEE-eccc--c--cccc-----chHHHHHHHHHhcCCC
Q 005751 80 D-KQYVWESKADGAFAISEDTWNEPLGRGTEIRLH-LRDE--A--GEYL-----EESKLKELVKKYSEFI 138 (679)
Q Consensus 80 ~-~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~-lk~~--~--~e~l-----~~~~~~~li~kys~fi 138 (679)
. .+|.|..+++|.+.... + ....+||+|+++ |-.. . ++|+ +-.++.+++++|+-+.
T Consensus 129 ~~~~~~~~~~~~G~~~~~~-~--~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~ 195 (365)
T 1h7s_A 129 AKVGTRLMFDHNGKIIQKT-P--YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIIS 195 (365)
T ss_dssp CSSCEEEEECTTSCEEEEE-E--CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred CcceEEEEEcCCCceEeec-c--cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcC
Confidence 4 48999988777765433 1 234789999998 3211 0 1143 3467889999998643
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.4e-10 Score=125.35 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=84.4
Q ss_pred CEEEecC-CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 1 MQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~-~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
|+|.+.. +...|+|.|||+||+.+++...+. +..|+.+ ....+.....-.|.+|+|++|.++|| +|+|+||+.+
T Consensus 45 I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~---~~~tsK~-~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 45 IEIIFKDYGLESIECSDNGDGIDPSNYEFLAL---KHYTSKI-AKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSP 119 (367)
T ss_dssp EEEEEETTTTSEEEEEECSCCCCGGGTTTTTC---CEEC----------CCCCEEEETTHHHHHHHHSS-EEEEEEESST
T ss_pred EEEEEEeCCEEEEEEEECCCCcChhHhcccee---ccccCcC-CchhhhhhhhccCccchHHHHhhccC-EEEEEEEECC
Confidence 4566643 346999999999999999874321 1122222 11111112345688899999999999 7999999977
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEE-------------EeccccccccchHHHHHHHHHhcCC
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRL-------------HLRDEAGEYLEESKLKELVKKYSEF 137 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L-------------~lk~~~~e~l~~~~~~~li~kys~f 137 (679)
..+|.|..+++|.+.... + ...++||+|++ +++....+| .++.++|++|+-.
T Consensus 120 ~~~~~~~~~~~G~~~~~~-~--~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~ 184 (367)
T 3h4l_A 120 PKADKLEYDMVGHITSKT-T--TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAII 184 (367)
T ss_dssp TCEEEEEECTTCCEEEEE-E--ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCcEEeec-c--ccCCCCeEEEEchhhccCchhhhhhccchHHHH---HHHHHHHHHHHhh
Confidence 568999998777765432 2 13479999999 445444333 5789999999753
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.85 E-value=3.9e-09 Score=113.22 Aligned_cols=122 Identities=26% Similarity=0.365 Sum_probs=77.9
Q ss_pred CEEEecCCC-CEEEEEECCCcCCHHHHHHHHhHHhccchH-HHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecC
Q 005751 1 MQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTS-AFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN 78 (679)
Q Consensus 1 I~I~~d~~~-~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~-~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~ 78 (679)
|+|.++.++ ..|+|.|||.||+.+++...+ .-..+++. .+ +.+ ......|.+|+|++|...|| +|+|+||..
T Consensus 48 I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~-~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~ 121 (348)
T 3na3_A 48 IQVIVKEGGLKLIQIQDNGTGIRKEDLDIVC-ERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTA 121 (348)
T ss_dssp EEEEEEGGGTSEEEEEECSCCCCGGGGGTTT-STTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECT
T ss_pred EEEEEEeCCEEEEEEEECCcCcChHHhhhhh-ccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEEC
Confidence 456665443 469999999999999976432 11111110 11 111 12346799999999999999 899999998
Q ss_pred CC-CceEEEeCCCCcE--EEEeCCCCCCCCCceEEEEE------------eccccccccchHHHHHHHHHhcC
Q 005751 79 DD-KQYVWESKADGAF--AISEDTWNEPLGRGTEIRLH------------LRDEAGEYLEESKLKELVKKYSE 136 (679)
Q Consensus 79 ~~-~~~~w~s~g~~~y--~i~~~~~~~~~~~GT~I~L~------------lk~~~~e~l~~~~~~~li~kys~ 136 (679)
+. .+|.|...+ |.. .+.+. ..++||+|++. |+.... +-.++++++++|+-
T Consensus 122 ~~~~~~~~~~~~-G~~~~~~~~~----~~~~GTtV~v~~LF~n~P~R~k~lk~~~~---e~~~i~~~l~~~Al 186 (348)
T 3na3_A 122 DGKCAYRASYSD-GKLKAPPKPC----AGNQGTQITVEDLFYNIATRRKALKNPSE---EYGKILEVVGRYSV 186 (348)
T ss_dssp TCSSEEEEEEET-TEESSCCEEE----CCCSEEEEEEESTTTTCHHHHHTSCCHHH---HHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeC-CEEeeeeeEe----cCCCCcEEEECcccccCchhhhhccccHH---HHHHHHHHHHHHHh
Confidence 54 578888765 332 23332 24789999995 443332 24678899999885
No 28
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.13 E-value=1.1e-06 Score=95.56 Aligned_cols=137 Identities=14% Similarity=0.167 Sum_probs=84.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH-------HHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~-------~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|.++.+ +.|+|+|||.||+.+++.. .+.+....|++ |.. .......|.+|+|+.++..+|++++|
T Consensus 56 I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~k-f~~----~~~~~s~G~~G~Gls~v~als~~~~v 129 (390)
T 1kij_A 56 ILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGK-FEQ----GAYKVSGGLHGVGASVVNALSEWTVV 129 (390)
T ss_dssp EEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESG-GGG----SSCCCCSCSSTTSHHHHHHTEEEEEE
T ss_pred EEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccc-ccC----ccccccCCCCCcceeeecccccceEE
Confidence 56666654 5999999999999988643 23343344444 311 11122468999999999999999999
Q ss_pred EeecCCCCceEEEeC-CCCcEEEEeCCCCCCCCCceEEEEEeccccccc----cchHHHHHHHHHhcC-CCceeEEEee
Q 005751 74 ISKHNDDKQYVWESK-ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY----LEESKLKELVKKYSE-FINFPIYIWA 146 (679)
Q Consensus 74 ~Tk~~~~~~~~w~s~-g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~----l~~~~~~~li~kys~-fi~~pI~i~~ 146 (679)
+|++.+ ..|..... |.....+.......+..+||+|++.... ..| ++...|.+.++.++- .-..-|.+..
T Consensus 130 ~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~Pd~--~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d 205 (390)
T 1kij_A 130 EVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDP--EIFGNLRFDPSKIRARLREVAYLVAGLKLVFQD 205 (390)
T ss_dssp EEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEECH--HHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEECh--HHhCCccccHHHHHHHHHHhcCcCCCcEEEEEe
Confidence 999754 33433322 3223334332111014689999997432 223 456788888888873 2234455543
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.08 E-value=1.6e-06 Score=96.66 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=76.0
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccE-----EEEEeecCCCC-ce
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDK-QY 83 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~-----V~V~Tk~~~~~-~~ 83 (679)
-.|+|+|||+||+.+++...+.....+ ++ .......|.+|+|+++|..+++. |.|.|+..++. .+
T Consensus 71 ~~I~V~DnG~GI~~e~l~~iF~~f~~t-sk--------~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~ 141 (471)
T 1mu5_A 71 YKVNVVDNGIGIPPQEVPNAFGRVLYS-SK--------YVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIY 141 (471)
T ss_dssp EEEEEECCSCCCCGGGHHHHHHCCCCC--C--------CCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHhcccccc-cc--------cccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEE
Confidence 479999999999999988665333111 11 01224568899999999999987 99999987554 45
Q ss_pred EEE--eC----CCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhc
Q 005751 84 VWE--SK----ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYS 135 (679)
Q Consensus 84 ~w~--s~----g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys 135 (679)
.|. .. +...+...+.+ .....+||+|+++++.+..++ ...+.+++++|+
T Consensus 142 ~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 142 TFKLKIDINKNEPIIVERGSVE-NTRGFHGTSVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEECTTTCCEEEEEEEEEE-CCTTCCEEEEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEeccccccCCccccccccc-CCCCCCCEEEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 444 11 22234443321 113468999999987654322 257889999987
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=97.92 E-value=4.8e-06 Score=93.95 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=75.3
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc-----EEEEEeecCCCC-ce
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QY 83 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad-----~V~V~Tk~~~~~-~~ 83 (679)
-.|+|.|||+||+.+++...+.....+ ++ + ......|.+|+|+++|..+++ ++.|.|+..++. .+
T Consensus 70 ~~I~V~DnG~GI~~e~l~~iF~~f~~t-sk-~-------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~ 140 (530)
T 2zbk_B 70 YKVNVVDNGIGIPPQEVPNAFGRVLYS-SK-Y-------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIY 140 (530)
T ss_dssp EEEEEECCSCCCCGGGSHHHHTSCCCS-CC-C-------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHhcccccc-CC-c-------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEE
Confidence 479999999999999887655333111 11 0 122466899999999999998 799999886544 44
Q ss_pred EEE----eC--CCCcEEEEeCCCCCCCCCceEEEEEeccccccccchHHHHHHHHHhcC
Q 005751 84 VWE----SK--ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSE 136 (679)
Q Consensus 84 ~w~----s~--g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~~~~li~kys~ 136 (679)
.|. .. +.......+.. .....+||+|++.++.+..++ ...+.+++++|+-
T Consensus 141 ~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 141 TFKLKIDINKNEPIIVERGSVE-NTRGFHGTSVAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE-CCSSCCEEEEEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEEecccccCCccccccccC-CCCCCCCcEEEEEeccchhhH--HHHHHHHHHHHHH
Confidence 443 11 11223333321 112468999999987654332 2678899998863
No 31
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=97.90 E-value=7.8e-06 Score=81.22 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=72.3
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHH-------HHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDL-------IKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el-------~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|.++. ++.|+|+|||.||..+++ ...+.+.-..|++ |-.... .-..|..|+|+-|+-.||++++|
T Consensus 41 I~V~i~~-~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK-~~~~~~----~~s~GfrGeglssinalS~~l~v 114 (201)
T 3fv5_A 41 VDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK-FSNKNY----QFSGGLHGVGISVVNALSKRVEV 114 (201)
T ss_dssp EEEEECT-TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------------------------CHHHHHTEEEEEE
T ss_pred EEEEEeC-CCEEEEEECCCCcCcccccccCcchhheeeeeeccccC-cCCCcc----cccCcccceecchhhcccceEEE
Confidence 5667654 459999999999999874 1222222233333 422111 12478999999999999999999
Q ss_pred EeecCCCCceEEEeCCCCc--EEEEeCCCCCCCCCceEEEEEecccc--ccccchHHHHHHHHHhcCC-CceeEEEee
Q 005751 74 ISKHNDDKQYVWESKADGA--FAISEDTWNEPLGRGTEIRLHLRDEA--GEYLEESKLKELVKKYSEF-INFPIYIWA 146 (679)
Q Consensus 74 ~Tk~~~~~~~~w~s~g~~~--y~i~~~~~~~~~~~GT~I~L~lk~~~--~e~l~~~~~~~li~kys~f-i~~pI~i~~ 146 (679)
+|++.+ ..|.-...+ |. -.+..........+||+|+++..... ..-.+...|.+.+++|+-. -...|.+..
T Consensus 115 ~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 115 NVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEEEEEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEEEEEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999864 333322222 32 22222110111468999999743321 1124567888999998742 235556654
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.49 E-value=2.1e-05 Score=90.17 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=80.6
Q ss_pred EEEecCCC---CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccE-----EEE
Q 005751 2 QIKLDKEK---KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEV 73 (679)
Q Consensus 2 ~I~~d~~~---~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~-----V~V 73 (679)
+|.+..++ ..|+|+|||.||+.+++..-+... .+|++ |. .....-|.+|+|+.+|..+++. +.|
T Consensus 63 ~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~-~atsk-f~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V 134 (621)
T 2q2e_B 63 LVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKL-LYGSR-FH------ALKQSRGQQGIGISAAVLYAQMTAGRHTKI 134 (621)
T ss_dssp EECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCC-CCC---CC------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEE
T ss_pred EEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhh-ccCCc-cc------cccccCCCceechhhhhHHHHHhCCCceeE
Confidence 44444333 479999999999999988654322 12222 21 1112348999999999999988 599
Q ss_pred EeecCCC-CceEEEe-----CCCCcEE-EEeCCCCCCCCCceEEEEEeccccccccc--hHHHHHHHHHhcCC-CceeEE
Q 005751 74 ISKHNDD-KQYVWES-----KADGAFA-ISEDTWNEPLGRGTEIRLHLRDEAGEYLE--ESKLKELVKKYSEF-INFPIY 143 (679)
Q Consensus 74 ~Tk~~~~-~~~~w~s-----~g~~~y~-i~~~~~~~~~~~GT~I~L~lk~~~~e~l~--~~~~~~li~kys~f-i~~pI~ 143 (679)
.|+..++ .++.+.. .+.+... ....+ ....+||+|+++++.+ |.. ...+.+++++|+-. -..-|.
T Consensus 135 ~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~~GT~V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~ 209 (621)
T 2q2e_B 135 LSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRPHGTQIELEMRAA---YVKGRRQSIYEYLKATAIVNPHARIT 209 (621)
T ss_dssp EEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCSSCCCEEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEE
T ss_pred EeeccCCccceEEEEecchhccccccccccccc--CCCCCCCEEEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9987643 4666653 3444432 12211 2346899999998733 333 25677888887632 234444
Q ss_pred Eee
Q 005751 144 IWA 146 (679)
Q Consensus 144 i~~ 146 (679)
+..
T Consensus 210 L~d 212 (621)
T 2q2e_B 210 LID 212 (621)
T ss_dssp ECC
T ss_pred EEE
Confidence 433
No 33
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.42 E-value=0.00016 Score=78.68 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=82.1
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHH--------HHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~e--------l~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|.++.+ +.|+|+|||.||..++ +.--|+..- .|++ |-. ..-.-.-|..|+|.-|+=.+|.+++
T Consensus 55 I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lh-agsK-f~~----~~~~~sgGl~GvGls~vnalS~~l~ 127 (390)
T 1s16_A 55 VDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH-AGGK-FSN----KNYQFSGGLHGVGISVVNALSKRVE 127 (390)
T ss_dssp EEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTT-EESC-SSS----SSCSSCSCCSSCHHHHHHHTEEEEE
T ss_pred EEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeec-ccCC-cCC----CcccccCCccccchHHHHHhhcccE
Confidence 56777655 5999999999999887 343344332 2332 311 1112256889999999999999999
Q ss_pred EEeecCCCCceEEEeCCC-CcEEEEeCCCCCCCCCceEEEEEeccccccc----cchHHHHHHHHHhcC-CCceeEEEee
Q 005751 73 VISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHLRDEAGEY----LEESKLKELVKKYSE-FINFPIYIWA 146 (679)
Q Consensus 73 V~Tk~~~~~~~~w~s~g~-~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~----l~~~~~~~li~kys~-fi~~pI~i~~ 146 (679)
|+|++.+ ..|.....++ ..-.+..........+||+|+..... .-| ++...|.+.++.++- .-..-|.+..
T Consensus 128 v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~--~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 128 VNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE--TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp EEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECG--GGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEEECC-cEEEEEEeCCcccccceecccccCCCCceEEEEEECc--cccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999753 3343333221 11223221111112589999988433 223 456788888888874 2345555543
No 34
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.16 E-value=0.00016 Score=72.77 Aligned_cols=136 Identities=18% Similarity=0.265 Sum_probs=75.9
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHH-------HHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDL-------IKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el-------~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|.++.+ +.|+|+|||.||..++. .....|....|++ |-. ..-.-.-|..|+|.-++=.++++++|
T Consensus 59 I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~K-fd~----~~yk~SgGlhGvG~svvNAlS~~l~v 132 (220)
T 4duh_A 59 IIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK-FDD----NSYKVSGGLHGVGVSVVNALSQKLEL 132 (220)
T ss_dssp EEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSC-CCT----TC--------CCCHHHHHHTEEEEEE
T ss_pred EEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeecccCCC-cCC----CccccccCccceecchhcccccceEE
Confidence 56777654 68999999999998752 1222233333433 211 11123568899999999999999999
Q ss_pred EeecCCCCce--EEEeCCCCcEEEEeCCCCCCCCCceEEEEEecccc-cc--ccchHHHHHHHHHhcCCC--ceeEEEee
Q 005751 74 ISKHNDDKQY--VWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEA-GE--YLEESKLKELVKKYSEFI--NFPIYIWA 146 (679)
Q Consensus 74 ~Tk~~~~~~~--~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~-~e--~l~~~~~~~li~kys~fi--~~pI~i~~ 146 (679)
++++.+ ..| .|+ .|...-.+... +....+||+|+.+..... .. -++.+.+.+.++.++ |+ ..-|.++.
T Consensus 133 ~v~r~g-~~~~~~f~-~G~~~~~l~~~--g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 133 VIQREG-KIHRQIYE-HGVPQAPLAVT--GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp EEEETT-EEEEEEEE-TTEESSSCEEE--EECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred EEEECC-EEEEEEec-CCcCcCCceec--cccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 998864 323 343 22211111111 112468999998754332 11 234577888888887 33 34556654
Q ss_pred c
Q 005751 147 S 147 (679)
Q Consensus 147 ~ 147 (679)
+
T Consensus 208 e 208 (220)
T 4duh_A 208 K 208 (220)
T ss_dssp T
T ss_pred c
Confidence 3
No 35
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.12 E-value=0.00028 Score=71.32 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=78.5
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHH------HHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKED------LIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVI 74 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~e------l~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~ 74 (679)
|.|.++.+ +.|+|+|||.||..++ ......+....|++ |-.. .-...-|..|+|.-++=.++.+++|+
T Consensus 64 I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~K-fd~~----~yk~SgGlhGvG~svvNALS~~l~v~ 137 (226)
T 4emv_A 64 IDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGK-FGQG----GYKTSGGLHGVGSSVVNALSSWLEVE 137 (226)
T ss_dssp EEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-------------------CGGGCCHHHHHHTEEEEEEE
T ss_pred EEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccCc-cCcc----ceEeccccccccchhhhhcccceEEE
Confidence 56777664 5899999999999987 22222233344443 4221 11345699999999999999999999
Q ss_pred eecCCCCce--EEEeCCC--CcEE-EEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHhcCCC--ceeEEEe
Q 005751 75 SKHNDDKQY--VWESKAD--GAFA-ISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKYSEFI--NFPIYIW 145 (679)
Q Consensus 75 Tk~~~~~~~--~w~s~g~--~~y~-i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~kys~fi--~~pI~i~ 145 (679)
+++.+ ..| .|+..+. .... +... .+...||+|+........ .-++.+.+.+.++.++ |+ ...|.++
T Consensus 138 v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~ 212 (226)
T 4emv_A 138 ITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLT 212 (226)
T ss_dssp EEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEE
T ss_pred EEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEE
Confidence 99864 333 3432101 1222 2221 114689999997554321 1246678888888887 44 3456665
Q ss_pred ec
Q 005751 146 AS 147 (679)
Q Consensus 146 ~~ 147 (679)
.+
T Consensus 213 de 214 (226)
T 4emv_A 213 DK 214 (226)
T ss_dssp ET
T ss_pred ec
Confidence 43
No 36
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.92 E-value=0.00059 Score=74.25 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=80.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHH--------HHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDL--------IKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el--------~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|.++.+ +.|+|+|||.||..++. .--|+..- .|++ |-+ ..-.-.-|..|+|.-|+=.+|.+++
T Consensus 58 I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh-agsK-f~~----~~~~vSgGl~GvGls~vnalS~~l~ 130 (391)
T 1ei1_A 58 IIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH-AGGK-FDD----NSYKVSGGLHGVGVSVVNALSQKLE 130 (391)
T ss_dssp EEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT-EESC-SSS----SSCSSCSCCSSCHHHHHHHTEEEEE
T ss_pred EEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc-ccCC-cCC----CcccccCCccccchHHHHHhcCeEE
Confidence 56777665 59999999999998772 22333232 3332 211 1112256889999999999999999
Q ss_pred EEeecCCCCceEEEeC-CC--CcEEEEeCCCCCCCCCceEEEEEeccccc---cccchHHHHHHHHHhcC-CCceeEEEe
Q 005751 73 VISKHNDDKQYVWESK-AD--GAFAISEDTWNEPLGRGTEIRLHLRDEAG---EYLEESKLKELVKKYSE-FINFPIYIW 145 (679)
Q Consensus 73 V~Tk~~~~~~~~w~s~-g~--~~y~i~~~~~~~~~~~GT~I~L~lk~~~~---e~l~~~~~~~li~kys~-fi~~pI~i~ 145 (679)
|+|++.+ ..|..... |. +...+.. + ...+||+|+.+...... .-++...|.+.++.++- .-..-|.+.
T Consensus 131 v~~~r~g-~~~~~~~~~G~~~~~l~~~~-~---~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~ 205 (391)
T 1ei1_A 131 LVIQREG-KIHRQIYEHGVPQAPLAVTG-E---TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR 205 (391)
T ss_dssp EEEEETT-EEEEEEEETTEESSCCEEEE-E---CSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEeCC-cEEEEEEcCCcccccceecc-C---cCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE
Confidence 9998754 33332222 21 1122211 1 13689999998433221 12356788888888764 234555654
Q ss_pred e
Q 005751 146 A 146 (679)
Q Consensus 146 ~ 146 (679)
.
T Consensus 206 d 206 (391)
T 1ei1_A 206 D 206 (391)
T ss_dssp E
T ss_pred c
Confidence 3
No 37
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.81 E-value=0.00089 Score=73.03 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=73.9
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHH--------HHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~e--------l~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|.++.+++.|+|+|||.||..++ +.--|++. ..|++ |-.. .-.-.-|..|+|.-++=.++.+++
T Consensus 77 I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~l-hagsK-f~~~----~ykvSgGlhGvGlsvVnAlS~~l~ 150 (400)
T 1zxm_A 77 IRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQL-LTSSN-YDDD----EKKVTGGRNGYGAKLCNIFSTKFT 150 (400)
T ss_dssp EEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSS-SEESC-CCGG----GCCCCSCCSSCHHHHHHHTEEEEE
T ss_pred EEEEEECCCCEEEEEECCCcccCccccccCccchhheeeee-cccCC-CCCC----cccccCCccccceeeeEEeccceE
Confidence 5677777668999999999999876 22233323 23332 3111 011256999999999999999999
Q ss_pred EEeecC-CCCceEEEeCCC-CcEEEEeCCCCCCCCCceEEEEEeccccc--cccchHH---HHHHHHHhc
Q 005751 73 VISKHN-DDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESK---LKELVKKYS 135 (679)
Q Consensus 73 V~Tk~~-~~~~~~w~s~g~-~~y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~---~~~li~kys 135 (679)
|+|+.. ++..|.....++ ..-.+..... ....+||+|+.+...... .-++.+. +.+.++.++
T Consensus 151 v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F~Pd~~iF~~~ef~~~~~~~l~~rlrelA 219 (400)
T 1zxm_A 151 VETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIA 219 (400)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEEEEChHHhCceeecHHHHHHHHHHHHHHH
Confidence 999874 333333222222 1111111100 113579999998544321 1123444 556666655
No 38
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=96.77 E-value=0.0018 Score=69.96 Aligned_cols=130 Identities=8% Similarity=0.118 Sum_probs=74.3
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD 80 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~ 80 (679)
|.|.++.+ +.|+|+|||.||.. |+. | .. ..|++ |- .........+-| |.-|+=.++.+++|+|++.+
T Consensus 54 I~V~i~~~-g~I~V~DnGrGIp~-e~v--~-~l-hagsK-f~-~~~~~~~y~vsG----Gls~vnalSs~l~v~t~r~g- 120 (369)
T 3cwv_A 54 VVLEVGGD-GSIALFCTSRTVTA-ENL--V-RV-ATGAG-FL-GRPPGDGWGWDS----MLVVSLALSSRYQVDIWADG- 120 (369)
T ss_dssp EEEEECTT-SCEEEEEEESSCCH-HHH--H-HH-HTTTT-GG-GSSCCCSTTTTS----SHHHHHHTEEEEEEEEEETT-
T ss_pred EEEEEeCC-CEEEEEECCCCcCH-hHe--e-ee-ecCCC-cC-CCcccccccccC----HHHHHHHhhceEEEEEEECC-
Confidence 56777655 49999999999999 444 2 22 23333 31 110001233334 76677788899999999754
Q ss_pred CceEEEeCCCCcE-----EEEeC-CCCCCCCCceEEEEEeccccccc----cchHHHHHHHHHhcC-CCceeEEEee
Q 005751 81 KQYVWESKADGAF-----AISED-TWNEPLGRGTEIRLHLRDEAGEY----LEESKLKELVKKYSE-FINFPIYIWA 146 (679)
Q Consensus 81 ~~~~w~s~g~~~y-----~i~~~-~~~~~~~~GT~I~L~lk~~~~e~----l~~~~~~~li~kys~-fi~~pI~i~~ 146 (679)
..|.....+ |.- .+.+. +.+....+||+|+.... ..-| .+...+.+.++.++- .-..-|.+..
T Consensus 121 ~~~~~~~~~-G~~~~~~~~~~~l~~~g~~~~~GT~V~f~Pd--~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 194 (369)
T 3cwv_A 121 RQWRVMGEH-GHPQGEGAAVTPMEPMPVSAERGVRVHFVPD--ATIFEVLAFDRARLSRRCNELAALAPGLRVSFAD 194 (369)
T ss_dssp EEEEEEEET-TEECTTCEEESSCCCCSSCCSEEEEEEEEEC--TTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CEEEEEEeC-CcccccccccCCceEecccCCCCCEEEEEEC--HHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEe
Confidence 344333322 221 02211 11222468999998833 3334 456788899999873 2234455543
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=96.58 E-value=0.0013 Score=71.90 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=72.2
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHH-------HHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDL-------IKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 73 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el-------~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V 73 (679)
|.|.++.+ +.|+|+|||.||..+.. .....|....|.+ |-.. .-.-.-|.-|+|.-++=.++.+++|
T Consensus 74 I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggK-fd~~----~ykvSgGlhGvG~svVNALS~~l~v 147 (408)
T 3lnu_A 74 IEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGK-FNNR----NYTFSGGLHGVGVSVVNALSTKVEL 147 (408)
T ss_dssp EEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC-------------------------CHHHHHHTEEEEEE
T ss_pred EEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEecccCCC-cCCC----ceeecCCccccccceehhccCeEEE
Confidence 56777654 69999999999998762 2232333444444 4221 1123568899999999999999999
Q ss_pred EeecCCCCce--EEEeCCC--CcEE-EEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHhcCC-CceeEEEe
Q 005751 74 ISKHNDDKQY--VWESKAD--GAFA-ISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKYSEF-INFPIYIW 145 (679)
Q Consensus 74 ~Tk~~~~~~~--~w~s~g~--~~y~-i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~kys~f-i~~pI~i~ 145 (679)
++++.+ ..| .|+ .|. .... +... .....||+|+........ .-++.+.|...++.++-. -..-|.+.
T Consensus 148 ~v~rdG-k~~~q~f~-~G~~~~~l~~ig~~---~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~ 222 (408)
T 3lnu_A 148 FIKREG-SEHRMEFR-DGNAASKLEVVGTV---GKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLH 222 (408)
T ss_dssp EEEETT-EEEEEEEE-TTEECSCCEEEEEC---CTTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEECC-EEEEEEEC-CCEECCCceEeccC---cCCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 999764 333 343 222 1122 2221 123689999987554321 124667788888887632 23456665
Q ss_pred e
Q 005751 146 A 146 (679)
Q Consensus 146 ~ 146 (679)
.
T Consensus 223 d 223 (408)
T 3lnu_A 223 D 223 (408)
T ss_dssp E
T ss_pred e
Confidence 4
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=95.23 E-value=0.01 Score=58.65 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=66.0
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeee-eeeccEEEEEeecCC
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHND 79 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~-FmVad~V~V~Tk~~~ 79 (679)
|.|.++.+ +.|+|+|||.||..+. -+.|+...+ +.+ |+ .|+ =.++.+++|+|++.+
T Consensus 55 I~V~i~~~-g~i~V~DnG~Gip~~~-------h~~~~~~~~-e~i-----------~t---~SvVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 55 IEVVIEKD-NWIKVTDNGRGIPVDI-------QEKMGRPAV-EVI-----------LT---SSVVNALSQDLEVYVHRNE 111 (198)
T ss_dssp EEEEEEGG-GEEEEEECSSCCCCSB-------CTTTSSBHH-HHH-----------HH---TCHHHHTEEEEEEEEEETT
T ss_pred EEEEEeCC-CeEEEEECCCCccccc-------cCcCCCccc-ccc-----------ce---eEehhhhcCeEEEEEEECC
Confidence 56666655 5999999999999861 123332221 111 22 222 234588999998864
Q ss_pred CCceEEEe-CCCCcEEEEeCCCCCCCCCceEEEEEeccccccc-----cchHHHHHHHHHhcCCC--ceeEEEeec
Q 005751 80 DKQYVWES-KADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY-----LEESKLKELVKKYSEFI--NFPIYIWAS 147 (679)
Q Consensus 80 ~~~~~w~s-~g~~~y~i~~~~~~~~~~~GT~I~L~lk~~~~e~-----l~~~~~~~li~kys~fi--~~pI~i~~~ 147 (679)
..|.-.. .|.....+.... ....+||+|+.+. +..-| ++.+.+.+.++.++ |+ ..-|.++.+
T Consensus 112 -~~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~P--d~~iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 181 (198)
T 3ttz_A 112 -TIYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKA--DGEIFTETTVYNYETLQQRIRELA-FLNKGIQITLRDE 181 (198)
T ss_dssp -EEEEEEEETTEESSCCEEEE--ECSCCEEEEEEEE--CTTTCCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEEC
T ss_pred -cEEEEEEeCCEECCCceecc--CCCCCCcEEEEEE--CHHHhccCCccCHHHHHHHHHHHh-hcCCCCEEEEEee
Confidence 3333222 222111111111 1236899999874 33445 56678888888887 44 445555543
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=94.20 E-value=0.017 Score=63.26 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=65.8
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHHHHH--------HHhHHhccchHHHHHHhhcCCCC-CcccccccceeeeeeeccEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKSGTSAFVEKMQTSGDL-NLIGQFGVGFYSVYLVADYV 71 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~el~~--------~LgtIa~Sgt~~f~~~~~~~~~~-~~IGqFGIGf~S~FmVad~V 71 (679)
|.|+++++++.|+|+|||.||..+.... -|+++ ..|.+ |- +... -.-|.-|||.=.+=.++.++
T Consensus 89 I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~L-haGgK-fd-----~~~ykvSGGLhGVG~SvVNALS~~l 161 (418)
T 1pvg_A 89 IDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHL-LTSSN-YD-----DDEKKVTGGRNGYGAKLCNIFSTEF 161 (418)
T ss_dssp EEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSS-SEESC-CC-----TTSCCCCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEE-ecccc-cC-----CCceeccCCccceeeeeeeeccceE
Confidence 5777887778999999999998664221 13222 33333 21 1112 24589999988888888999
Q ss_pred EEEeecC-CCCce--EEEeCC---CCcEEEEeCCCCCCCCCceEEEEEecccc
Q 005751 72 EVISKHN-DDKQY--VWESKA---DGAFAISEDTWNEPLGRGTEIRLHLRDEA 118 (679)
Q Consensus 72 ~V~Tk~~-~~~~~--~w~s~g---~~~y~i~~~~~~~~~~~GT~I~L~lk~~~ 118 (679)
+|++++. ++..| .|+... ... .+... .....||+|+.+.....
T Consensus 162 ~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~V~F~PD~~i 210 (418)
T 1pvg_A 162 ILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTKVTFKPDLTR 210 (418)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEEEEEEECGGG
T ss_pred EEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceEEEEEEChHH
Confidence 9999863 34433 454220 112 34332 12358999998876543
No 42
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=93.91 E-value=0.012 Score=56.37 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=32.4
Q ss_pred EEEecCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCC
Q 005751 2 QIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK 81 (679)
Q Consensus 2 ~I~~d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~ 81 (679)
+|.+.. ..|+|.|||.||+.+++..-+..-. ++ ...-.+..|+|++-|--+++. .
T Consensus 140 ~i~~~~--~~i~V~D~G~Gi~~~~~~~if~~f~-~~------------~~~~~~g~GlGL~i~~~i~~~-------~--- 194 (222)
T 3jz3_A 140 DVTLNA--DNFIVRDNGPGVTPEALARIGERFY-RP------------PGQTATGSGLGLSIVQRIAKL-------H--- 194 (222)
T ss_dssp EEEECS--SEEEEECSCC---------------------------------------CTHHHHHHHHHH-------T---
T ss_pred EEEEcc--CeEEEEECCCCCCHHHHHHHHhhhc-cC------------CCCCCCcccccHHHHHHHHHH-------c---
Confidence 444433 3399999999999988765442111 10 011234689999877544432 1
Q ss_pred ceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 82 QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 82 ~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|.+++.. ....||+|++++-.
T Consensus 195 --------gG~i~i~s-----~~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 195 --------GMNVEFGN-----AEQGGFEAKVSWLE 216 (222)
T ss_dssp --------TCEEECCB-----CTTSSBEEEEECCC
T ss_pred --------CCEEEEEc-----CCCCcEEEEEeecC
Confidence 24455543 23578999888754
No 43
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=91.54 E-value=0.064 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=17.7
Q ss_pred cCCCCEEEEEECCCcCCHHHHH
Q 005751 6 DKEKKILSIRDRGIGMTKEDLI 27 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~ 27 (679)
+.+.-.|+|.|||.||+.+++.
T Consensus 88 ~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 88 EGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp ETTEEEEEEEECSSCCCHHHHH
T ss_pred cCCEEEEEEEeCCCCcCHHHHh
Confidence 3344579999999999999874
No 44
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=91.29 E-value=0.081 Score=50.76 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=13.9
Q ss_pred cCCCCEEEEEECCCcCCHHHH
Q 005751 6 DKEKKILSIRDRGIGMTKEDL 26 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el 26 (679)
+.+.-.|+|.|||+||+.+.+
T Consensus 158 ~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 158 LWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp ETTEEEEEEEESSCCCC----
T ss_pred eCCEEEEEEEECCcCCCCCCC
Confidence 344458999999999999875
No 45
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=90.69 E-value=0.093 Score=47.29 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=43.4
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEE
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVW 85 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w 85 (679)
+.+.-.|+|.|||.||+.+++...+ ..+.+ ....-+..|+|++.|--+++. .
T Consensus 71 ~~~~~~i~i~D~G~gi~~~~~~~~f----~~~~~----------~~~~~~g~GlGL~i~~~~~~~-------~------- 122 (152)
T 1id0_A 71 TDEHLYIVVEDDGPGIPLSKREVIF----DRGQR----------VDTLRPGQGVGLAVAREITEQ-------Y------- 122 (152)
T ss_dssp CSSCEEEEEEESSSCCCGGGTTGGG----SCCCC----------TTCCCTTCCSCHHHHHHHHHH-------T-------
T ss_pred cCCEEEEEEEeCCCCcCHHHHHHHh----cccee----------ccCCCCCcccCHHHHHHHHHH-------c-------
Confidence 4445589999999999988765332 21111 011125689999876544322 1
Q ss_pred EeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 86 ESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 86 ~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|.+++... ...||++++.+--
T Consensus 123 ----gG~i~~~~~-----~~~G~~~~i~lP~ 144 (152)
T 1id0_A 123 ----EGKIVAGES-----MLGGARMEVIFGR 144 (152)
T ss_dssp ----TCEEEEEEC-----TTSSEEEEEEECC
T ss_pred ----CCEEEEEeC-----CCCcEEEEEEEec
Confidence 245555542 2358888887753
No 46
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=90.66 E-value=0.091 Score=47.43 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=39.8
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEE
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVW 85 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w 85 (679)
+.+.-.|+|.|||.||+.+++...+..-.+ + +..--+..|+|++.|--+++. .
T Consensus 74 ~~~~~~i~v~D~G~gi~~~~~~~if~~f~~-~------------~~~~~~g~GlGL~i~~~~~~~-------~------- 126 (150)
T 1ysr_A 74 SRAGVEIAIDDNGSGVPEGERQVVFERFSR-G------------STASHSGSGLGLALVAQQAQL-------H------- 126 (150)
T ss_dssp ETTEEEEEEEESSSCCCGGGHHHHHTSCC------------------------CCCHHHHHHHHH-------T-------
T ss_pred cCCEEEEEEEECCCCCCHHHHHHHhccccc-C------------CCCCCCCCCcCHHHHHHHHHH-------c-------
Confidence 344467999999999999887654421111 0 011124579998877555432 1
Q ss_pred EeCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 86 ESKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 86 ~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|.+++... ...||++++.+-
T Consensus 127 ----gG~i~~~~~-----~~~G~~~~i~lP 147 (150)
T 1ysr_A 127 ----GGTASLENS-----PLGGARLVLRLP 147 (150)
T ss_dssp ----TCEEEEEEC-----TTSSEEEEEEEE
T ss_pred ----CCEEEEeec-----CCCCEEEEEEEe
Confidence 244555442 245888887763
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=90.33 E-value=0.14 Score=49.59 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=31.0
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeecc
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD 69 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad 69 (679)
+.+.-.|+|.|||.||+.+++...+ ..+.+ ..-.+..|+|++.|--+++
T Consensus 152 ~~~~~~i~i~D~G~gi~~~~~~~if----~~~~~-----------~~~~~g~GlGL~i~~~i~~ 200 (244)
T 3d36_A 152 DNGRVLIRIADTGVGMTKEQLERLG----EPYFT-----------TKGVKGTGLGMMVVYRIIE 200 (244)
T ss_dssp ETTEEEEEEEECSSCCCHHHHHHTT----STTCC-----------SSGGGCCSCHHHHHHHHHH
T ss_pred eCCEEEEEEEecCCCCCHHHHHHHh----ccccc-----------CCCCCCcchhHHHHHHHHH
Confidence 4445679999999999998876433 11110 1113457999988755543
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=90.28 E-value=0.15 Score=45.98 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=30.9
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEe
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 75 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~T 75 (679)
+.+.-.|+|+|||.||+ ++.. +.....+ .....+..|+|++-+-.+++++.+.+
T Consensus 71 ~~~~~~i~V~D~G~g~~--~~~~----~~~~~~~----------~~~~~~~~GlGL~iv~~~~~~i~~~~ 124 (145)
T 1th8_A 71 EDGVVHLTVRDEGVGIP--DIEE----ARQPLFT----------TKPELERSGMGFTIMENFMDEVIVES 124 (145)
T ss_dssp ETTEEEEEEEECSSCCS--CHHH----HTCCC-----------------CCCSCHHHHHHHHSSEEEEEE
T ss_pred eCCEEEEEEEECCCCcC--hHHH----hhccccc----------CCCCCCCCcchHHHHHHHHheEEEEe
Confidence 34445799999999999 3332 2222111 00122457999988877777554443
No 49
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=90.02 E-value=0.057 Score=53.47 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=26.8
Q ss_pred CCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 9 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
.-.|+|.|||+||+.+++..-|..-- ++.. ....-.+..|+|++-|--++
T Consensus 173 ~~~i~V~D~G~Gi~~~~~~~if~~f~-~~~~---------~~~~~~~G~GLGL~i~~~iv 222 (258)
T 2c2a_A 173 GVLIIVEDNGIGIPDHAKDRIFEQFY-RVDS---------SLTYEVPGTGLGLAITKEIV 222 (258)
T ss_dssp EEEEEEEECSSCCCGGGTTGGGSTTC-CCC------------------CCCTHHHHHHHH
T ss_pred eEEEEEEecCCCCCHHHHHhhccccc-cCCC---------CCCCCCCCcchHHHHHHHHH
Confidence 35689999999999987653331111 1100 01112345899998775543
No 50
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=89.75 E-value=0.13 Score=55.05 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred EEEecC--CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 2 QIKLDK--EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 2 ~I~~d~--~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
+|.+.. +.-.|+|.|+|.||+.+++..-+..- .++... ... +......+.+|+|++-|-.+++ ..
T Consensus 261 ~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f-~~~~~~--~~~--~~~~~~~~G~GLGL~i~~~i~~-------~~- 327 (394)
T 2btz_A 261 KVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYM-YSTAPT--PQP--GTGGTPLAGFGYGLPISRLYAK-------YF- 327 (394)
T ss_dssp EEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTT-TTCCC------------------CCHHHHHHHHHH-------HT-
T ss_pred EEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhccc-ccCCCC--CCc--ccCCCCCCCccCCHHHHHHHHH-------Hh-
Confidence 444433 34579999999999999876544211 111110 000 0012345779999987755553 12
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|..++... .+.||+++|+|.-
T Consensus 328 ----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 328 ----------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp ----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred ----------CCEEEEEec-----CCCceEEEEEecC
Confidence 245566542 2569999999864
No 51
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=89.35 E-value=0.13 Score=50.85 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEE
Q 005751 7 KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWE 86 (679)
Q Consensus 7 ~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~ 86 (679)
.+.-.|+|.|||.||+.+.+...+ ..+.+ .--+..|+|++.|--+++. .
T Consensus 185 ~~~~~i~V~D~G~Gi~~~~~~~if----~~~~~------------~~~~g~GlGL~i~~~~~~~-------~-------- 233 (268)
T 4ew8_A 185 LGEVRLDVSDTGRGVPFHVQAHIF----DRFVG------------RDRGGPGLGLALVKALVEL-------H-------- 233 (268)
T ss_dssp SSEEEEEEEESSCCCCHHHHTTTT----STTCC------------CSSCCCTTHHHHHHHHHHH-------T--------
T ss_pred CCEEEEEEEcCCCCCCHHHHHHHH----HHHhc------------CCCCCCcccHHHHHHHHHH-------c--------
Confidence 344579999999999998765332 11110 1124679998876544432 1
Q ss_pred eCCCCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 87 SKADGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 87 s~g~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|.+++... ...||++++.|-
T Consensus 234 ---gG~i~i~s~-----~~~Gt~~~i~lP 254 (268)
T 4ew8_A 234 ---GGWVALESE-----PGNGSTFTCHLP 254 (268)
T ss_dssp ---TCEEEEEEC-----TTSCEEEEEEEE
T ss_pred ---CCEEEEEec-----CCCCEEEEEEec
Confidence 244555442 245788877764
No 52
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.35 Score=59.27 Aligned_cols=125 Identities=11% Similarity=0.152 Sum_probs=64.7
Q ss_pred CEEEecCCCCEEEEEECCCcCCHHH-------HHHHHhHHhccchHHHHHHhhcCCCCC-cccccccceeeeeeeccEEE
Q 005751 1 MQIKLDKEKKILSIRDRGIGMTKED-------LIKNLGTIAKSGTSAFVEKMQTSGDLN-LIGQFGVGFYSVYLVADYVE 72 (679)
Q Consensus 1 I~I~~d~~~~~L~I~DnGiGMt~~e-------l~~~LgtIa~Sgt~~f~~~~~~~~~~~-~IGqFGIGf~S~FmVad~V~ 72 (679)
|.|+++.+++.|+|+|||-||.-+. ...-..|...+|.+ |- +.... .-|.-|||.=-|=.++.+..
T Consensus 84 I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgK-Fd-----~~~ykvSGGLHGVG~svVNALS~~~~ 157 (1177)
T 4gfh_A 84 IDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN-YD-----DDEKKVTGGRNGYGAKLCNIFSTEFI 157 (1177)
T ss_dssp EEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESC-CC-----CSSCCCCSCCSSCHHHHHHHTEEEEE
T ss_pred EEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccccC-cC-----CCCCeEeccCCChhhhHHhhcCCceE
Confidence 5677888889999999999997431 01111233344443 21 11222 45899999633333345545
Q ss_pred EEeecC-CCCce--EEEeCCC--CcEEEEeCCCCCCCCCceEEEEEeccccc--cccchHHHHHHHHHh
Q 005751 73 VISKHN-DDKQY--VWESKAD--GAFAISEDTWNEPLGRGTEIRLHLRDEAG--EYLEESKLKELVKKY 134 (679)
Q Consensus 73 V~Tk~~-~~~~~--~w~s~g~--~~y~i~~~~~~~~~~~GT~I~L~lk~~~~--e~l~~~~~~~li~ky 134 (679)
|++... ++..| .|+.... +.=.+... .+...||+|+.+...... .-++.+.+....++.
T Consensus 158 vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 158 LETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 555322 23333 3542211 11122222 234679999987765421 123555565555554
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=88.77 E-value=0.092 Score=46.60 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=16.1
Q ss_pred cCCCCEEEEEECCCcCCHHHH
Q 005751 6 DKEKKILSIRDRGIGMTKEDL 26 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el 26 (679)
+.+.-.|+|.|||.||+.+.+
T Consensus 68 ~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 68 LWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp ETTEEEEEEEESSCCCSCSSC
T ss_pred eCCEEEEEEEECCcCcCcccC
Confidence 344457999999999987654
No 54
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=88.49 E-value=0.053 Score=50.65 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=41.5
Q ss_pred CEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEeCC
Q 005751 10 KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 89 (679)
Q Consensus 10 ~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s~g 89 (679)
-.|+|.|||.||+.+.+...+..-. ++.. ....-.+..|+|++.|-.+++. .
T Consensus 78 ~~i~V~D~G~gi~~~~~~~lf~~~~-~~~~---------~~~~~~~g~GlGL~iv~~~~~~-------~----------- 129 (177)
T 3sl2_A 78 LYISVKDEGIGIPKKDVEKVFDRFY-RVDK---------ARTRKLGGTGLGLAIAKEMVQA-------H----------- 129 (177)
T ss_dssp EEEEEECCSSCCCTTTTTTTTSTTC-CCC---------------CCCCCCHHHHHHHHHHH-------T-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHhhhc-cCCC---------CCCCCCCCCCcCHHHHHHHHHH-------c-----------
Confidence 4689999999999887653331111 1110 0122345789999876544432 1
Q ss_pred CCcEEEEeCCCCCCCCCceEEEEEec
Q 005751 90 DGAFAISEDTWNEPLGRGTEIRLHLR 115 (679)
Q Consensus 90 ~~~y~i~~~~~~~~~~~GT~I~L~lk 115 (679)
+|.+++... ...||+++|.|-
T Consensus 130 ~G~i~i~~~-----~~~Gt~~~i~lP 150 (177)
T 3sl2_A 130 GGDIWADSI-----EGKGTTITFTLP 150 (177)
T ss_dssp TCCEEEEEE-----TTTEEEEEEEEE
T ss_pred CCEEEEEec-----CCCCeEEEEEEe
Confidence 245666542 246899888864
No 55
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=88.12 E-value=0.19 Score=54.03 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=49.2
Q ss_pred EEEec--CCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 2 QIKLD--KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 2 ~I~~d--~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
+|.+. .+.-.|+|.|+|.||+.+++..-+. -..++... ... ........|.+|+|++-|-.+++ ..
T Consensus 273 ~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~-~f~~~~~~--~~~-~~~~~~~~~G~GLGL~Ivr~i~~-------~~- 340 (407)
T 2q8g_A 273 QVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFN-YMYSTAPR--PRV-ETSRAVPLAGFGYGLPISRLYAQ-------YF- 340 (407)
T ss_dssp EEEEEECSSEEEEEEEECSCCCCHHHHGGGGC-TTTTCCCC--CCS-SCCSCCCSSCTTCHHHHHHHHHH-------HT-
T ss_pred EEEEEeCCCEEEEEEEecCCCCCHHHHHHHhC-ccccCCCC--CCc-cccCCCCCCCcCCCHHHHHHHHH-------Hh-
Confidence 44443 3345699999999999998764331 11111000 000 00022356789999987755443 11
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|..++... .+.||+++|+|.-
T Consensus 341 ----------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 341 ----------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp ----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred ----------CCEEEEEEc-----CCCceEEEEEECC
Confidence 245566542 2569999999864
No 56
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=88.02 E-value=0.17 Score=54.18 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=49.4
Q ss_pred EEEec--CCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCC
Q 005751 2 QIKLD--KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND 79 (679)
Q Consensus 2 ~I~~d--~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~ 79 (679)
+|.+. .+.-+|+|.|+|.||+.+++..-+.. ..++... ..+. .......+.+|+|++-|-.+++ ..
T Consensus 260 ~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~-f~~~~~~--~~~~-~~~~~~~~G~GLGL~i~~~i~~-------~~- 327 (394)
T 2e0a_A 260 EVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSY-TYSTAPT--PVMD-NSRNAPLAGFGYGLPISRLYAK-------YF- 327 (394)
T ss_dssp EEEEEECSSEEEEEEEECSCCCCGGGHHHHTST-TCCSSCC--C-------CCCSSCSSCHHHHHHHHHH-------HT-
T ss_pred EEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCc-CccCCCC--CCcC-cCCCCCCCCcccCHHHHHHHHH-------Hh-
Confidence 44443 33457999999999999887654411 1111100 0000 0022345789999987755543 11
Q ss_pred CCceEEEeCCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 80 DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 80 ~~~~~w~s~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|...+... .+.||+++|+|.-
T Consensus 328 ----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 328 ----------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp ----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred ----------CCEEEEEec-----CCccEEEEEEeCC
Confidence 245556542 2569999999864
No 57
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=87.86 E-value=0.085 Score=48.34 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=30.3
Q ss_pred cCCCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeec
Q 005751 6 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 68 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVa 68 (679)
+.+.-.|.|.|||.||+.+++...+ ....+ .....--+..|+|++-|--++
T Consensus 74 ~~~~~~i~i~D~G~gi~~~~~~~~f----~~f~~--------~~~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 74 EPNRAWFQVEDDGPGIAPEQRKHLF----QPFVR--------GDSARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp ETTEEEEEEEEESSCSCTTGGGCSS----CCCCC--------CSCCCCCCCCSCCCCTTHHHH
T ss_pred cCCEEEEEEEeCCCCCCHHHHHHhC----CCcee--------CCCCCCCCCcccCHHHHHHHH
Confidence 3344569999999999988764322 11110 011112357899998875554
No 58
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=87.81 E-value=0.19 Score=54.35 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCCEEEEEECCCcCCHHHHHHHHhHHhccchHHHHHHhhcCCCCCcccccccceeeeeeeccEEEEEeecCCCCceEEEe
Q 005751 8 EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWES 87 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~el~~~LgtIa~Sgt~~f~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Tk~~~~~~~~w~s 87 (679)
+.-.|+|.|+|+||+++++..-+.. ..++... ..+. .......+.+|+|++-|-.+++ ..
T Consensus 292 ~~v~I~V~D~G~GI~~e~l~~iF~~-f~~~~~~--~~~~-~~~~~~~~G~GLGL~I~k~iv~-------~~--------- 351 (419)
T 1y8o_A 292 EDLSIKISDLGGGVPLRKIDRLFNY-MYSTAPR--PSLE-PTRAAPLAGFGYGLPISRLYAR-------YF--------- 351 (419)
T ss_dssp SEEEEEEEECSCCCCHHHHGGGGCT-TTC----------------CC--CTTHHHHHHHHHH-------HT---------
T ss_pred CEEEEEEEECCCCCCHHHHHHHhCc-ccccCCC--CCcc-ccCCCCcCCeecCHHHHHHHHH-------Hh---------
Confidence 3457999999999999987644411 1111110 0000 0122346779999987755543 11
Q ss_pred CCCCcEEEEeCCCCCCCCCceEEEEEecc
Q 005751 88 KADGAFAISEDTWNEPLGRGTEIRLHLRD 116 (679)
Q Consensus 88 ~g~~~y~i~~~~~~~~~~~GT~I~L~lk~ 116 (679)
+|..++... .+.||+++|+|.-
T Consensus 352 --gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 352 --QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp --TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred --CCEEEEEec-----CCCCEEEEEEecC
Confidence 245566542 2569999999864
No 59
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=85.10 E-value=0.46 Score=50.75 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=16.6
Q ss_pred CCCEEEEEECCCcCCHHHHH
Q 005751 8 EKKILSIRDRGIGMTKEDLI 27 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~el~ 27 (679)
+.-.|+|.|||.||+.+.+.
T Consensus 149 ~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 149 NNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp TEEEEEEEECSCCCCHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHH
Confidence 33568999999999999874
No 60
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=84.89 E-value=0.26 Score=43.19 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=15.5
Q ss_pred ecCCCCEEEEEECCCcCCHHH
Q 005751 5 LDKEKKILSIRDRGIGMTKED 25 (679)
Q Consensus 5 ~d~~~~~L~I~DnGiGMt~~e 25 (679)
.+.+ -.|+|.|||.||+.+.
T Consensus 70 ~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 70 VDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp ESSE-EEEEEEECCCCCTTTT
T ss_pred EcCC-EEEEEecCCCCCCccc
Confidence 3444 6799999999998654
No 61
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=84.72 E-value=0.13 Score=54.75 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEec--CCCCEEEEEECCCcCCHHHHHH
Q 005751 2 QIKLD--KEKKILSIRDRGIGMTKEDLIK 28 (679)
Q Consensus 2 ~I~~d--~~~~~L~I~DnGiGMt~~el~~ 28 (679)
+|.+. .+.-+|+|.|+|+||+.+++..
T Consensus 269 ~I~~~~~~~~v~i~V~D~G~GI~~~~~~~ 297 (388)
T 1gkz_A 269 VITIANNDVDLIIRISDRGGGIAHKDLDR 297 (388)
T ss_dssp EEEEEECSSEEEEEEECCSCCCCTTTTTT
T ss_pred EEEEEeCCCEEEEEEEEeCCCcCHHHHHH
Confidence 44443 3345699999999999988653
No 62
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=49.28 E-value=4.8 Score=35.82 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=11.3
Q ss_pred CCEEEEEECCCcCCHHHHHHHH
Q 005751 9 KKILSIRDRGIGMTKEDLIKNL 30 (679)
Q Consensus 9 ~~~L~I~DnGiGMt~~el~~~L 30 (679)
.-.|+|.|||.||+.+++...+
T Consensus 91 ~~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 91 AARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp EEEEEEEEECTTC---------
T ss_pred EEEEEEEeCCCCCCHHHHHHhh
Confidence 3478999999999998876443
No 63
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=48.60 E-value=5.2 Score=34.37 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=15.6
Q ss_pred cCCCCEEEEEECCCcCCHHH
Q 005751 6 DKEKKILSIRDRGIGMTKED 25 (679)
Q Consensus 6 d~~~~~L~I~DnGiGMt~~e 25 (679)
+.+ -.|+|+|||.||+.+.
T Consensus 67 ~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 67 EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp EEE-EEEEEEECCCSSCGGG
T ss_pred CCC-EEEEEEECCCCCCccc
Confidence 444 6899999999999765
No 64
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=46.09 E-value=4.6 Score=35.65 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=16.8
Q ss_pred CCCEEEEEECCCcCCHHHHHH
Q 005751 8 EKKILSIRDRGIGMTKEDLIK 28 (679)
Q Consensus 8 ~~~~L~I~DnGiGMt~~el~~ 28 (679)
+.-.|+|.|||.||+.+++..
T Consensus 78 ~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 78 TKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp SEEEEEEEEESCCCCGGGTTG
T ss_pred CEEEEEEEeCCCCcCHHHHHh
Confidence 345789999999999887653
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=34.55 E-value=11 Score=38.11 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=16.6
Q ss_pred CCCCEEEEEECCCcCCHHHHH
Q 005751 7 KEKKILSIRDRGIGMTKEDLI 27 (679)
Q Consensus 7 ~~~~~L~I~DnGiGMt~~el~ 27 (679)
.+.-.|+|.|||+||+.+.+.
T Consensus 274 ~~~~~i~v~D~G~Gi~~~~~~ 294 (349)
T 3a0r_A 274 YTKVRVSVWNSGPPIPEELKE 294 (349)
T ss_dssp TTEEEEEEEEESCCCCGGGGT
T ss_pred CCEEEEEEEECCCCCChHHHh
Confidence 344578999999999988754
No 66
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=33.82 E-value=72 Score=34.60 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=37.6
Q ss_pred ccCCCceEEEEeCCCHHHHhcChhHHHHHhcCcEEEEeCCCChHHHHHH
Q 005751 427 MKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQY 475 (679)
Q Consensus 427 mke~qk~IYY~t~~s~~~~~~sP~lE~~k~kg~eVL~l~dpiDE~~i~~ 475 (679)
++..|+..-|...+.+..+. =+|..|++.|++|||.--||-..|...
T Consensus 260 ~K~~~k~~~y~~SpEy~Dlq--l~L~~~k~~~~~vlfVi~PVNgkWydy 306 (407)
T 3bma_A 260 LKDSQKSFTYLKSPEYNDLQ--LVLTQFSKSKVNPIFIIPPVNKKWMDY 306 (407)
T ss_dssp HTTTTTTCCCSSCTHHHHHH--HHHHHHHHTTCEEEEEECCCCHHHHHH
T ss_pred hcCcccCCCcccCccHHHHH--HHHHHHHHcCCceEEEEeCCchHHHHh
Confidence 45567887788776666665 478999999999999999998877644
Done!