BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005752
(679 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
pdb|2ZXC|B Chain B, Seramidase Complexed With C2
pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
Pseudomonas Aeruginosa
Length = 646
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 143/232 (61%), Gaps = 13/232 (5%)
Query: 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARY 59
MMGY+++EQ +GIH R AR F++ E G R+V+VN D M Q V +KV+ RLKA+Y
Sbjct: 23 MMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKY 82
Query: 60 GDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLR 119
+Y E NV ++ HTH+GPGG+ Y +Y ++ LGF ++F+A+VDGI +S+ +A L+
Sbjct: 83 PGVYDENNVMLAATHTHSGPGGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQ 142
Query: 120 PGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNW 179
PG +F GEL +AS +RS ++L NP + Y+ +D +M++L FVD G+ +W
Sbjct: 143 PGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDPQMSVLSFVDANGELAGAISW 200
Query: 180 FATHGTSMSRTNSLISGDNKGAAARFMED----------WFEQSNAGHSSAD 221
F H TSM+ N LIS DNKG A+ E F Q+NAG+ S +
Sbjct: 201 FPVHSTSMTNANHLISPDNKGYASYHWEHDVSRKSGFVAAFAQTNAGNLSPN 252
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 145/260 (55%), Gaps = 22/260 (8%)
Query: 422 PSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSY 481
P++LPIQ+ ++GQL +L P EFT MAG R+R AV+ G HVV G N+Y
Sbjct: 390 PTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIR----HVVFNGYANAY 445
Query: 482 SQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASALLSGQPVELGPQPPDLLDKQ 541
+ YVTT EEY Q YEG STLYGP T +AY Q F +A AL PVE PDL Q
Sbjct: 446 ASYVTTREEYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPDLSCCQ 505
Query: 542 ISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVE 601
++F T VV D IG +FGD ++R G+ VTV+F + P+NDL TE TF +E
Sbjct: 506 MNFQTGVVADDPYIGKSFGDVLQQ--PRESYRIGDKVTVAFVTGHPKNDLRTEKTF--LE 561
Query: 602 ILH----GKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFG 657
+++ GK D+D+ +++W R +SA S ATI W IP G Y IRH+G
Sbjct: 562 VVNIGKDGKQTPVTVATDNDWDTQYRWER-VGISA-SKATISWSIPPGTEPGHYYIRHYG 619
Query: 658 AAKSLL--------GSTRHF 669
AK+ GSTR F
Sbjct: 620 NAKNFWTQKISEIGGSTRSF 639
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 24/102 (23%)
Query: 278 AEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFE 337
+ K GFV+AF Q+N G++SPN+ + G GP + +EF+
Sbjct: 232 SRKSGFVAAFAQTNAGNLSPNL-----------------------NLKPGSGP-FDNEFD 267
Query: 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEV 379
+TR IG RQF KA ++ +A E++ G++D R ++DF++L +
Sbjct: 268 NTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPI 309
>pdb|3BAL|A Chain A, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|B Chain B, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|C Chain C, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|D Chain D, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
Length = 153
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 99 SFDALVDGIEKSVLQAHENLRPGSIFVNKGELL-------DASISRSPSAYLNNPASERG 151
S+ A+ + S +H + PG F+ KG++ S + +PS + + G
Sbjct: 46 SWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHG 105
Query: 152 KYKYNVDKEMTL-----LKFVDDQWGPVGSFNWFATHGTSMSRTN 191
K + V+ + + L F+DD + S W G ++ N
Sbjct: 106 KTFFPVESQFYMTFLGPLNFIDDNGKVIASIGWAEAQGAWLATKN 150
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 485 VTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASAL 522
+T F+ Y+V G+ LYGP TL Q + + +AL
Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNAL 38
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 88 YIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISR 137
Y V + V + LV+ S+++A + +PG + N G L+DA +S+
Sbjct: 209 YFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSK 258
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 486 TTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLASAL 522
T F+ Y+V G+ LYGP TL Q + + +AL
Sbjct: 2 TIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNAL 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,111,534
Number of Sequences: 62578
Number of extensions: 849095
Number of successful extensions: 1811
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 9
length of query: 679
length of database: 14,973,337
effective HSP length: 105
effective length of query: 574
effective length of database: 8,402,647
effective search space: 4823119378
effective search space used: 4823119378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)