Query 005752
Match_columns 679
No_of_seqs 230 out of 564
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 13:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 2E-179 5E-184 1416.1 46.6 633 1-679 50-734 (734)
2 PTZ00487 ceramidase; Provision 100.0 1E-169 2E-174 1437.0 65.4 611 1-679 58-715 (715)
3 PF04734 Ceramidase_alk: Neutr 100.0 4E-170 8E-175 1452.1 51.8 610 1-679 20-674 (674)
4 COG3356 Predicted membrane pro 97.5 0.00071 1.5E-08 76.7 12.1 117 1-131 413-533 (578)
5 PF09843 DUF2070: Predicted me 97.4 0.0015 3.3E-08 64.9 11.3 116 2-131 43-163 (179)
6 PF01835 A2M_N: MG2 domain; I 95.4 0.13 2.7E-06 45.6 9.7 77 569-658 8-86 (99)
7 PF10342 GPI-anchored: Ser-Thr 58.3 1.2E+02 0.0026 25.9 10.3 86 566-678 3-93 (93)
8 PTZ00397 macrophage migration 54.7 31 0.00067 31.6 5.8 50 23-75 49-103 (116)
9 PF01282 Ribosomal_S24e: Ribos 51.3 33 0.00072 30.1 5.2 38 41-80 8-45 (84)
10 KOG3006 Transthyretin and rela 49.7 30 0.00065 32.5 4.7 18 639-656 67-85 (132)
11 TIGR03769 P_ac_wall_RPT actino 41.9 23 0.00049 27.0 2.3 24 639-665 6-29 (41)
12 PF10633 NPCBM_assoc: NPCBM-as 41.4 29 0.00064 29.3 3.2 22 635-656 51-74 (78)
13 PF14552 Tautomerase_2: Tautom 37.3 42 0.00091 29.3 3.6 45 30-76 26-75 (82)
14 PF00868 Transglut_N: Transglu 32.3 3.3E+02 0.0071 25.2 8.9 67 574-655 48-114 (118)
15 PF15418 DUF4625: Domain of un 30.3 96 0.0021 29.6 5.1 40 615-657 74-115 (132)
16 TIGR03196 pucD xanthine dehydr 30.2 2.5E+02 0.0054 34.5 9.8 99 29-130 475-574 (768)
17 PTZ00450 macrophage migration 29.7 1.2E+02 0.0026 28.1 5.5 49 23-74 49-102 (113)
18 PF12103 Lipl32: Surface lipop 26.9 1E+02 0.0022 30.5 4.6 82 575-658 63-158 (182)
19 PF02014 Reeler: Reeler domain 24.0 2.4E+02 0.0052 26.2 6.6 77 570-655 28-120 (132)
20 COG1470 Predicted membrane pro 23.4 1.3E+02 0.0027 34.7 5.1 45 617-661 425-471 (513)
21 PRK01178 rps24e 30S ribosomal 22.7 1.6E+02 0.0035 26.7 4.8 48 31-80 16-63 (99)
22 cd08544 Reeler Reeler, the N-t 21.8 3E+02 0.0064 25.6 6.7 79 571-657 29-118 (135)
23 cd08523 Reeler_cohesin_like Do 21.3 6.6E+02 0.014 23.8 8.8 19 572-590 9-27 (124)
24 PF01960 ArgJ: ArgJ family; I 20.4 3.3E+02 0.0071 30.7 7.6 46 18-73 54-101 (388)
25 PRK10301 hypothetical protein; 20.0 4.6E+02 0.01 24.5 7.5 7 576-582 46-52 (124)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-179 Score=1416.08 Aligned_cols=633 Identities=75% Similarity=1.201 Sum_probs=611.9
Q ss_pred CCcccCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 005752 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (679)
Q Consensus 1 m~GYa~~~q~a~Gihd~L~ARAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHSgP~ 80 (679)
|||||+..|.+.|||.||+|||||++++.++|++||++|.+|+++.++.+|.+||+++||++|.++||.||+||||+||+
T Consensus 50 mMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPg 129 (734)
T KOG2232|consen 50 MMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPG 129 (734)
T ss_pred eccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCc
Confidence 89999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhccCCChhhcccCCCCCCCe
Q 005752 81 GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKE 160 (679)
Q Consensus 81 g~~~~~~~~i~~~g~~~~y~~~lvd~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~~ay~~NP~~er~~~~g~vD~~ 160 (679)
||+||++|.++++||.++.|+.+|++|.++|.+||+||+|++|.+++|++.++++|||+++|++||++||++|+.++|++
T Consensus 130 Gylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKe 209 (734)
T KOG2232|consen 130 GYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKE 209 (734)
T ss_pred ceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCeEE---EEEeeeccccccC---CCCcccc---CCcHHHHHHHHHHHhcccCCCCCCcccccccCCCcc
Q 005752 161 MTLLKFVDDQWGPVG---SFNWFATHGTSMS---RTNSLIS---GDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRR 231 (679)
Q Consensus 161 v~vL~f~~~dG~~ia---~L~nyA~HpTsl~---~~N~lIS---~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~ 231 (679)
|++|||+|.++.++| +..||++|+++|+ +.|+++| +|+.||++++||++.+.
T Consensus 210 mtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~~~------------------- 270 (734)
T KOG2232|consen 210 MTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKASNP------------------- 270 (734)
T ss_pred eEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhhCc-------------------
Confidence 999999999899999 5999999999999 8899999 99999999999997542
Q ss_pred ccccccccccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCcEEEEecccccCCCCCCCCcccccCCCCC
Q 005752 232 VSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPC 311 (679)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~~~d~g~~c 311 (679)
.+.+||.+++.+++++.+| ...++.||+||||+|+||||||++|++|.|+|+||
T Consensus 271 ----------------------~~~pG~~v~~~~~~~~rvr----~~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~C 324 (734)
T KOG2232|consen 271 ----------------------NSMPGKSVTRSSSVARRVR----NADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPC 324 (734)
T ss_pred ----------------------ccCCCcccccchhhhhhhh----cccccchhhhhhhccCCCCCcccccchhhcCCCcc
Confidence 3567999999999999986 56788999999999999999999999999999999
Q ss_pred CCCCCcCCCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCceeeEEEeeecCcceeecCCCCCCcccc
Q 005752 312 DFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETV 391 (679)
Q Consensus 312 ~~~~s~c~~~~~~~~~~Gp~~~d~~~~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~ 391 (679)
|++||||+|++++|.++|||++|||||++|||+||++.|++||++++++++|+|+++|+||||++++|.+|...+..+.+
T Consensus 325 d~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~v 404 (734)
T KOG2232|consen 325 DFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVV 404 (734)
T ss_pred ccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887777889
Q ss_pred ccccccccchhhccCCCCCCCcccccCCCC------------------------------------------CeeEEEEE
Q 005752 392 KTCPAAMGFAFAAGTTDGPGAFDFTQGDDK------------------------------------------PSILPIQI 429 (679)
Q Consensus 392 ~tc~~a~G~sfaagt~dgpg~~~f~qg~~~------------------------------------------p~~~~vq~ 429 (679)
+|||||||++|||||+||||+|+|+||++. |.|+++||
T Consensus 405 ktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qi 484 (734)
T KOG2232|consen 405 KTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQI 484 (734)
T ss_pred ccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchhe
Confidence 999999999999999999999999999875 78999999
Q ss_pred EEECCEEEEecCCccchHHHHHHHHHHHHHhhhcCCCCCCceEEEEeccCcccCccCChhhhccCceeeeeeccCCCcHH
Q 005752 430 LQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLS 509 (679)
Q Consensus 430 lriG~l~iv~vPgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~GlsN~y~gYitT~eeY~~q~YEg~sT~yGp~tl~ 509 (679)
||||+|+|++||||||||+|||||++|++.+.+.+. ..+.+|+|+||+|.|++||+|+|||++|||||+||+||||||.
T Consensus 485 lriGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~-~~~~~VVIaGLtN~YsqYi~T~EEYqvQRYE~ASTlyGpHtlS 563 (734)
T KOG2232|consen 485 LRIGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGN-SINMHVVIAGLTNIYSQYITTFEEYQVQRYEGASTLYGPHTLS 563 (734)
T ss_pred eeeccEEEEecCccceehhhHHHHHHHHHHHHhcCC-CcceEEEEeccccchhhhcccHHHHhHHHhhccccccCcchhh
Confidence 999999999999999999999999999999987653 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCcccccccccCCcccCCCCCCCCccceeecCCCCccccCCCeEEEEEEccCCCC
Q 005752 510 AYIQEFKKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRN 589 (679)
Q Consensus 510 ay~q~~~~La~~l~~~~~~~~gp~p~d~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn 589 (679)
+|||+|++|+++|..+..+++||.|||+.++++++++||++|..|.|..||||+.+++.++.|+.|+.|+|+|++|||||
T Consensus 564 ~Yiq~FkkLakal~~~~t~~~GPqPPdl~dk~islltpv~~D~tP~g~~FGdV~s~vp~k~~~r~g~~v~v~f~sanPrN 643 (734)
T KOG2232|consen 564 AYIQEFKKLAKALVRDETVDRGPQPPDLLDKQISLLTPVVVDGTPIGTDFGDVKSDVPNKSYFRRGTQVKVTFRSANPRN 643 (734)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCchHhhhhhhccCceeeccCccCCccccccCCCCCchhhccccEEEEEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999766788999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCC-eEEEecCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcceeEEEeecccccCCCcee
Q 005752 590 DLMTEGTFALVEILHGKDI-WAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRH 668 (679)
Q Consensus 590 ~l~~~~tf~~Ver~~~~~~-W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~~~g~~~~ 668 (679)
||++|+||++|||+.++++ |++|+||+||+|+|.|.|++.+++.|++||+|+||+.+.||.|||+|||.+|.++|.|++
T Consensus 644 dl~Te~Tf~~VEr~~~~~~tW~~vydD~~~~~rf~W~r~~kl~~~S~atieW~Ipeta~pGvYRIrhfG~~k~ilg~i~~ 723 (734)
T KOG2232|consen 644 DLMTEGTFATVERLEEGDKTWKPVYDDDDWELRFKWSRPNKLSGFSQATIEWRIPETASPGVYRIRHFGAAKKILGSIHS 723 (734)
T ss_pred ccccccceeeehhhhccCceeeeeecCccceeEEEeccCccccccccceEEEecCCcCCCceEEEEeccccccccccccc
Confidence 9999999999999987765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccceEEC
Q 005752 669 FTGSSSAFVVA 679 (679)
Q Consensus 669 ~~g~s~~F~v~ 679 (679)
|||+|+.|+|.
T Consensus 724 f~Gss~aF~V~ 734 (734)
T KOG2232|consen 724 FEGSSSAFVVV 734 (734)
T ss_pred cccCccceEeC
Confidence 99999999984
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=1.1e-169 Score=1437.01 Aligned_cols=611 Identities=47% Similarity=0.842 Sum_probs=574.8
Q ss_pred CCcccCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhC-CCCCCCcEEEEeeccCCCC
Q 005752 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG-DLYTEKNVAISGIHTHAGP 79 (679)
Q Consensus 1 m~GYa~~~q~a~Gihd~L~ARAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G-~~i~~~nViIsaTHTHSgP 79 (679)
||||+.+.|+++|||||||||||||++.+++|++||++|+++++++++++|+++|++++| ++|+.+||+|++|||||||
T Consensus 58 m~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~Gi~~y~~~NVllsATHTHSGP 137 (715)
T PTZ00487 58 MMGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGPDLYTLDNVLLSGTHTHSGP 137 (715)
T ss_pred ccccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHHHHhCcCcCChhhEEEEeeecCCCC
Confidence 899999999999999999999999965469999999999999999999999999999999 6779999999999999999
Q ss_pred CCCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhccCCChhhcccCCCCCCC
Q 005752 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (679)
Q Consensus 80 ~g~~~~~~~~i~~~g~~~~y~~~lvd~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~~ay~~NP~~er~~~~g~vD~ 159 (679)
+++.++.+|+++.+||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+.+|++||++||..|++++||
T Consensus 138 gg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~~ay~~NP~~er~~y~g~vD~ 217 (715)
T PTZ00487 138 AGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDK 217 (715)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCChhhhhcCchhhccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhcccCCCCCCcccccccCCCcccccccccc
Q 005752 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (679)
Q Consensus 160 ~v~vL~f~~~dG~~ia~L~nyA~HpTsl~~~N~lIS~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (679)
+|+||+|++.||+++|+|+|||||||+|+++|++||+||||+++++||+.+++ + . ..|
T Consensus 218 ~m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~--------------~-~-----~~p-- 275 (715)
T PTZ00487 218 NMTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNG--------------N-D-----SFP-- 275 (715)
T ss_pred ceEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhcc--------------C-c-----cCC--
Confidence 99999999999999999999999999999999999999999999999998754 1 0 001
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCcEEEEecccccCCCCCCCCcccccCCCCCCCCCCcCC
Q 005752 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~~~d~g~~c~~~~s~c~ 319 (679)
+.++|||+|+|||+||+|||+.|++|.| |+|||+++|||+
T Consensus 276 ---------------------------------------g~~~FVAaF~qg~~GDvsPn~~g~~c~~-g~~c~~~~stc~ 315 (715)
T PTZ00487 276 ---------------------------------------GVGPFIAAFGQSNEGDVSPNTRGPTCRD-GIPCDYKTSTCN 315 (715)
T ss_pred ---------------------------------------CCCceeEEEccCCcccCCCCCCCCcccc-CCcccccccccC
Confidence 1235999999999999999999999999 999999999999
Q ss_pred CCCcccccCCCCCC-CchhHHHHHHHHHHHHHHHHHhhccccccCceeeEEEeeecCcceeecCCCCCCccccccccccc
Q 005752 320 GKNEMCYGRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAM 398 (679)
Q Consensus 320 ~~~~~~~~~Gp~~~-d~~~~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~~tc~~a~ 398 (679)
|+++.|+++||++. |||+++++||+||+++|++||+++.++|+|+|+++|+|+||++++|..+.. .+....+||+|||
T Consensus 316 g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~~~~~-~~~~~~~tC~aa~ 394 (715)
T PTZ00487 316 GTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVEPPYN-SGVQVATTCRGAM 394 (715)
T ss_pred CcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEeccccC-CCCCcceeccccc
Confidence 99999999999977 799999999999999999999988889999999999999999999964321 1236789999999
Q ss_pred cchhhccCCCCCCCcccccCCC----C---------------------------------------CeeEEEEEEEECCE
Q 005752 399 GFAFAAGTTDGPGAFDFTQGDD----K---------------------------------------PSILPIQILQVGQL 435 (679)
Q Consensus 399 G~sfaagt~dgpg~~~f~qg~~----~---------------------------------------p~~~~vq~lriG~l 435 (679)
|+||||||+||||.|+|+||++ + |.++||||+|||+|
T Consensus 395 G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G~~~p~~w~p~iv~iQi~riG~l 474 (715)
T PTZ00487 395 GYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVGMVEPIPWVPDVMPIQIMTIGQI 474 (715)
T ss_pred CcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCCCCCCCCCcCceeeeEEEEEeeE
Confidence 9999999999999999999851 1 78999999999999
Q ss_pred EEEecCCccchHHHHHHHHHHHHHhhhcCCCCCCceEEEEeccCcccCccCChhhhccCceeeeeeccCCCcHHHHHHHH
Q 005752 436 VILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEF 515 (679)
Q Consensus 436 ~iv~vPgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~GlsN~y~gYitT~eeY~~q~YEg~sT~yGp~tl~ay~q~~ 515 (679)
+|+++|||+|||+|||||++|++++... ..+++|+|+||+|+|+|||||+|||+.|+|||+||+||||||+||+|++
T Consensus 475 ~i~~~P~E~TtmaGrRlr~aV~~~~~~~---~~~~~Vvl~G~aN~Y~~YvtT~EEY~~QrYEGaSTlyGp~TL~ay~q~~ 551 (715)
T PTZ00487 475 VLVAVPGEFTTMSGRRLRNTVREIIGTS---IENPIVLIAGLSNTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEF 551 (715)
T ss_pred EEEecCcccchhHHHHHHHHHHHHhhcC---CCCceEEEEecccccccccCCHHHhhhhhhccccceeCchHHHHHHHHH
Confidence 9999999999999999999999988642 1467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccccccccCCcccCCCCCCCCccceeecCCCCccccCCCeEEEEEEccCCCCCCCCCC
Q 005752 516 KKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEG 595 (679)
Q Consensus 516 ~~La~~l~~~~~~~~gp~p~d~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~ 595 (679)
.+||++|++|.++++||.|||+.+++++|++||++|++|+|++||||++||.+.+.|++|++|+|+|++||||||||+++
T Consensus 552 ~~la~al~~~~~~~~Gp~Pp~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~ 631 (715)
T PTZ00487 552 DKLAQSIVDGQPISPGLKPRNLYGHTWFFLPPVIVDSAPFFDDFGDLYQDVDTEKVYSNNDTVSAEFYGGNPRNNFMTES 631 (715)
T ss_pred HHHHHHHhcCCCCCCCCCCCcccCCcccccCCcccCCCCCCCccCcEeccCCcccccCCCCEEEEEEEecCCCCccccCc
Confidence 99999999999999999999999999999999999999999999999999955223999999999999999999999999
Q ss_pred CeEEEEEEeCCCCeEEEecCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcceeEEEeecccc--cCCCceeeEEec
Q 005752 596 TFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKS--LLGSTRHFTGSS 673 (679)
Q Consensus 596 tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~--~~g~~~~~~g~s 673 (679)
||++|||++++++|++|+||+||+|+|+|+|+. ++.|++||+|+||++++||+|||+|||+||+ +.|+|+||||+|
T Consensus 632 tf~~Ve~~~~~~~W~~v~~D~dw~t~~~W~r~~--~~~S~~ti~W~i~~~~~~G~YRi~~~G~~k~~~~~g~i~~f~G~s 709 (715)
T PTZ00487 632 SFLTVDKLNEKNQWTTILVDGDWDTKWHWKMHD--LGFSLITIIWSIGPTTEPGTYRITHSGYAKKNPFSQNLTPYQGIS 709 (715)
T ss_pred ceEEEEEecCCCceeEeccCCCcceEEEEeccC--CCceeEEEEEECCCCCCCeeeEEEEeecccccccCCCceeeEEec
Confidence 999999998888999999999999999999983 6899999999999999999999999999998 799999999999
Q ss_pred cceEEC
Q 005752 674 SAFVVA 679 (679)
Q Consensus 674 ~~F~v~ 679 (679)
++|+|.
T Consensus 710 ~~F~v~ 715 (715)
T PTZ00487 710 SNFKVQ 715 (715)
T ss_pred CceEeC
Confidence 999985
No 3
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=3.8e-170 Score=1452.12 Aligned_cols=610 Identities=59% Similarity=0.961 Sum_probs=430.3
Q ss_pred CCcccCCCCccceeecceEEEEEEEEeC-CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCC
Q 005752 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP 79 (679)
Q Consensus 1 m~GYa~~~q~a~Gihd~L~ARAlvl~~~-~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHSgP 79 (679)
||||+++.|+++|||||||||||||+++ +++|+|||++|++++++.++++|+++|++++|.+|+.+||+|++|||||||
T Consensus 20 m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g~~y~~~nViIsaTHTHSgP 99 (674)
T PF04734_consen 20 MMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYGILYDEENVIISATHTHSGP 99 (674)
T ss_dssp EESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--BSBEE
T ss_pred cCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhcCCCChheEEEEeEecCCCC
Confidence 8999999999999999999999999942 679999999999999999999999999999998889999999999999999
Q ss_pred CCCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhccCCChhhcccCCCCCCC
Q 005752 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (679)
Q Consensus 80 ~g~~~~~~~~i~~~g~~~~y~~~lvd~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~~ay~~NP~~er~~~~g~vD~ 159 (679)
+|+.++++++++..||+++++++|+++|++||++|+++|+|++|.++++++.++++|||+.+|++||++||.+|++++||
T Consensus 100 gg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ay~~NP~~er~~y~g~vD~ 179 (674)
T PF04734_consen 100 GGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPSAYLRNPAEERARYDGPVDP 179 (674)
T ss_dssp ----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T--T-TT-TTS---
T ss_pred CccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCchhhhcCccccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhcccCCCCCCcccccccCCCcccccccccc
Q 005752 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (679)
Q Consensus 160 ~v~vL~f~~~dG~~ia~L~nyA~HpTsl~~~N~lIS~D~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (679)
+|+||+|++.||+++|+|+|||||||+|+++|++||+|||||++++||++++. .
T Consensus 180 ~~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~--------------~------------ 233 (674)
T PF04734_consen 180 EMTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGG--------------D------------ 233 (674)
T ss_dssp EEEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT-----------------------------
T ss_pred ceeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhcc--------------c------------
Confidence 99999999999999999999999999999999999999999999999998753 0
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCcEEEEecccccCCCCCCCCcccccCCCCCCCCCCcCC
Q 005752 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (679)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvSPn~~g~~~~d~g~~c~~~~s~c~ 319 (679)
+.+.++|||+|+|+|+||+|||+.|++|.|+|++||+++|||+
T Consensus 234 -------------------------------------~~~~~~fVaaFaq~n~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 276 (674)
T PF04734_consen 234 -------------------------------------LAGKPPFVAAFAQGNAGDVSPNTLGPFCEDTGLPCDFEHSTCG 276 (674)
T ss_dssp ----------------------------------------STT-EEEEE-SS-TTEES-SS-------------------
T ss_pred -------------------------------------ccCCCCeEEEEccCCcccccccccccccccccccccccccccc
Confidence 1245689999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCceeeEEEeeecCcceeecCCCCCCcccccccccccc
Q 005752 320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG 399 (679)
Q Consensus 320 ~~~~~~~~~Gp~~~d~~~~~~~iG~~q~~~a~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~~~~~~~~~~~~tc~~a~G 399 (679)
|+.++|+++||+ .|||++++|||+||+++|++||+++.++|+|+|+++|+||||++++|..+. +++....+||+||||
T Consensus 277 ~~~~~~~~~Gp~-~d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~~~-~~~~~~~~tc~~a~G 354 (674)
T PF04734_consen 277 GKNELCHGRGPG-KDMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDPPF-TGDGKTVRTCPAAMG 354 (674)
T ss_dssp ----SSSTSSST-S-HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GGG-T-TSS-EE-----EE
T ss_pred ccccccCCCCCC-ccchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEccCC-CCCCCcCcccccccc
Confidence 999999999998 599999999999999999999998899999999999999999999999542 333478999999999
Q ss_pred chhhccCCCCCCCcccccCCC--C------------------------------------------CeeEEEEEEEECCE
Q 005752 400 FAFAAGTTDGPGAFDFTQGDD--K------------------------------------------PSILPIQILQVGQL 435 (679)
Q Consensus 400 ~sfaagt~dgpg~~~f~qg~~--~------------------------------------------p~~~~vq~lriG~l 435 (679)
+||||||+||||.|+|+||.+ . |.++||||+|||+|
T Consensus 355 ~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi~riG~l 434 (674)
T PF04734_consen 355 YSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQIVRIGQL 434 (674)
T ss_dssp ----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEEEEETTE
T ss_pred cccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEEEEEcCE
Confidence 999999999999999999987 2 78999999999999
Q ss_pred EEEecCCccchHHHHHHHHHHHHHhhhcCCCCCCceEEEEeccCcccCccCChhhhccCceeeeeeccCCCcHHHHHHHH
Q 005752 436 VILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEF 515 (679)
Q Consensus 436 ~iv~vPgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~vvv~GlsN~y~gYitT~eeY~~q~YEg~sT~yGp~tl~ay~q~~ 515 (679)
+|+++|||+|||+|||||++|++++...+. .+.+|+|+||+|+|+|||||+|||+.|+|||+||+||||||+||+|++
T Consensus 435 ~i~~~P~E~TtmaGrRlr~~v~~~~~~~~~--~~~~vvi~g~sN~Y~~YvtT~EEY~~Q~YEg~sTl~Gp~tl~a~~q~~ 512 (674)
T PF04734_consen 435 VIVAVPGEFTTMAGRRLREAVAEALGAAGI--DDPHVVIAGLSNGYSHYVTTPEEYQVQRYEGASTLYGPHTLAAYIQEF 512 (674)
T ss_dssp EEEE-SSEE-HHHHHHHHHHHHHHHGGGT------EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-TTHHHHHHHHH
T ss_pred EEEEcCCcchhHHHHHHHHHHHHHHhhcCC--CceEEEEEeeccCcccccCCHHHhhcCcccccceeeCHhHHHHHHHHH
Confidence 999999999999999999999999987542 257999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccccccccCCcccCCCCCCCCccceeecCCCCccccCCCeEEEEEEccCCCCCCCCCC
Q 005752 516 KKLASALLSGQPVELGPQPPDLLDKQISFLTPVVMDSTPIGVNFGDCKSDVPQNTTFRRGEMVTVSFWSACPRNDLMTEG 595 (679)
Q Consensus 516 ~~La~~l~~~~~~~~gp~p~d~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~ 595 (679)
.+||++|++|.++++||.|||+++++++++++|++|.+|+|++||||+.|| +++|++|++|+|+|||||||||||+++
T Consensus 513 ~~la~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~--~~~y~~g~~v~~~F~~a~Prn~l~~~~ 590 (674)
T PF04734_consen 513 ARLARALADGEPVPPGPSPPDLSSKQISLPPGVVFDAPPLGKSFGDVLQQP--NPSYRPGDTVSATFVGANPRNNLRLEG 590 (674)
T ss_dssp HHHHHHHHHT------------GGG--B-S--------STT--TT-EEE-----SEEETT-EEEEEEEE--GGG---TTS
T ss_pred HHHHHHHhhcccCCCCCCCcccccccccccccCCCCCCCCCCCcCceEeCC--cCccCCCCeEEEEEeeeCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999998 459999999999999999999999999
Q ss_pred CeEEEEEEeCCCCeEEEecCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcceeEEEeecccccCCCceeeEEeccc
Q 005752 596 TFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHFGAAKSLLGSTRHFTGSSSA 675 (679)
Q Consensus 596 tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~~~g~~~~~~g~s~~ 675 (679)
|||+|||++++|.|++|+||+||+|+|+|+|++.+++.|++||+|+||++++||+|||+|||++|++.|+++||+|+|++
T Consensus 591 tfl~Ver~~~~~~W~~v~~D~dw~t~f~W~r~~~~~~~S~~ti~W~ip~~~~~G~YRi~~~G~~k~~~g~i~~f~G~S~~ 670 (674)
T PF04734_consen 591 TFLTVERLESGGSWQTVADDADWSTRFRWKRTGSLLGTSEVTIEWEIPPDTPPGTYRIRHFGDAKSLFGGITPFEGTSRE 670 (674)
T ss_dssp -SEEEEEEES-S--EEEEETTSTTEEEEEEEETTT--EEEEEEEEE--TT--SEEEEEEEEEEEE-TTT-EEEEEEE---
T ss_pred CeEEEEEecCCCCeEEEEeCCCccEEEEEEecCCccccEEEEEEEECCCCCCCCCEEEEEEeeccCCCCCeEeEEEECCc
Confidence 99999999878899999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred eEEC
Q 005752 676 FVVA 679 (679)
Q Consensus 676 F~v~ 679 (679)
|+|+
T Consensus 671 F~V~ 674 (674)
T PF04734_consen 671 FTVT 674 (674)
T ss_dssp EEE-
T ss_pred eEeC
Confidence 9995
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.52 E-value=0.00071 Score=76.65 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=92.0
Q ss_pred CCcccCC---CCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 005752 1 MMGYANM---EQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (679)
Q Consensus 1 m~GYa~~---~q~a~Gihd~L~ARAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHS 77 (679)
++||+.. -++..|+ -+..+||++++. +++|.++|-+|.=.+..+++++|++++.+ + .+++.+..|-||.
T Consensus 413 rvG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~-g~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH~ 484 (578)
T COG3356 413 RVGYARGKPLVDAEDGL-GPGGIRAAVVDT-GDTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTHY 484 (578)
T ss_pred cceeeccCCCCCCCCCc-CcCceEEEEEec-CCeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCce
Confidence 5789863 2444554 468999999999 89999999999999999999999998887 3 6799999999998
Q ss_pred CCC-CCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 005752 78 GPG-GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (679)
Q Consensus 78 gP~-g~~~~~~~~i~~~g~~~~y~~~lvd~iv~AI~~A~~~l~Pa~l~~g~g~~~ 131 (679)
--+ ....| ...|. +.-...|.+.++.++++|.++++|+++++.+.++.
T Consensus 485 vn~~~~~~~-----~pvg~-r~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 485 VNGRLVLGY-----NPVGS-REDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred ecccccccc-----ccccc-cccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 654 22211 11222 23456799999999999999999999988888765
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.38 E-value=0.0015 Score=64.94 Aligned_cols=116 Identities=20% Similarity=0.166 Sum_probs=87.3
Q ss_pred CcccCCCCccceeec---ceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCC
Q 005752 2 MGYANMEQIASGIHF---RLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAG 78 (679)
Q Consensus 2 ~GYa~~~q~a~Gihd---~L~ARAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHSg 78 (679)
.||+... +.-|-|+ +.-.+|++++. ++++.++|.+|---+.+.++++|++++.+. .+.+.|..|.||+-
T Consensus 43 ~G~~~~~-~~~~~~~~lg~~gi~~~~v~~-~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~------~d~~ev~TTDtH~~ 114 (179)
T PF09843_consen 43 VGYAEAE-PFLGEHEGLGIGGISALVVEV-GGQRSALVLADSNNMEPGLREKIREALGDV------VDEVEVMTTDTHFV 114 (179)
T ss_pred cceEecc-CCCCCCCCcCccccEEEEEEe-CCcEEEEEEEECCCCCHHHHHHHHHHHhhh------cceeEEecCcccEE
Confidence 4666432 3344443 45689999998 899999999999999999999999888773 57899999999996
Q ss_pred CCCCc--cchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 005752 79 PGGYL--QYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (679)
Q Consensus 79 P~g~~--~~~~~~i~~~g~~~~y~~~lvd~iv~AI~~A~~~l~Pa~l~~g~g~~~ 131 (679)
-+-.. .|+.+.. .. -.+.+.+.+.+++.+|.++++|+++++.+..+.
T Consensus 115 ~~~~~g~~y~~vG~----~~--~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~~ 163 (179)
T PF09843_consen 115 NGESGGNGYWPVGP----LI--PPREIIESRREAVSEAERDLEPVEVGYKEVYVK 163 (179)
T ss_pred ccEECCccceeccc----cC--CHHHHHHHHHHHHHHHHhcccccEEEEEEEEEE
Confidence 55221 1222210 00 346788889999999999999999999988854
No 6
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=95.43 E-value=0.13 Score=45.61 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=44.2
Q ss_pred CccccCCCeEEEEEEccCCCCC-CCCCCCeEEEEEEeCCCCeEEEecCCCceeEEEEec-CCCCCceeEEEEEEEcCCCC
Q 005752 569 NTTFRRGEMVTVSFWSACPRND-LMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSR-PSKLSARSMATIEWRIPDTA 646 (679)
Q Consensus 569 ~~~y~~g~~v~~~F~~a~Prn~-l~~~~tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r-~~~~~~~s~~~i~W~ip~~~ 646 (679)
++.|+|||+|.+..+.-+..++ ....+.-+.|+-.+.+| ...++|.. .. .....+..+|.+|.+.
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g-----------~~v~~~~~~~~--~~~G~~~~~~~lp~~~ 74 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSG-----------NEVFRWSVNTT--NENGIFSGSFQLPDDA 74 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTS-----------EEEEEEEEEET--TCTTEEEEEEE--SS-
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEECCCC-----------CEEEEEEeeee--CCCCEEEEEEECCCCC
Confidence 4499999999988874444332 22233444455444442 23445554 22 2345677899999999
Q ss_pred CCcceeEEEeec
Q 005752 647 PLGVYRIRHFGA 658 (679)
Q Consensus 647 ~~G~YRi~~~G~ 658 (679)
+.|+|+|+...+
T Consensus 75 ~~G~y~i~~~~~ 86 (99)
T PF01835_consen 75 PLGTYTIRVKTD 86 (99)
T ss_dssp --EEEEEEEEET
T ss_pred CCEeEEEEEEEc
Confidence 999999999885
No 7
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=58.31 E-value=1.2e+02 Score=25.94 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=49.7
Q ss_pred CCCCccccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEeCCC----CeEEEecCCCceeEEEEecCCCCCceeEEEEEEE
Q 005752 566 VPQNTTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKD----IWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWR 641 (679)
Q Consensus 566 ~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~~----~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ 641 (679)
|..++.+..|+.+++++-..+ ....-++|.-..++. .+.+++++-+ .+.=.+.|.
T Consensus 3 P~~~~~~~~g~~~~I~W~~~~------~~~~~~~I~L~~g~~~~~~~~~~ia~~v~---------------~~~gs~~~~ 61 (93)
T PF10342_consen 3 PTAGTVWTAGQPITITWTSDG------TDPGNVTIYLCNGNNTNLNFVQTIASNVS---------------NSDGSYTWT 61 (93)
T ss_pred CCCCCEEECCCcEEEEEeCCC------CCCcEEEEEEEcCCCCCcceeEEEEeccc---------------CCCCEEEEE
Confidence 334567888998998887643 112455666554442 2333332211 122346899
Q ss_pred cCCCCCC-cceeEEEeecccccCCCceeeEEeccceEE
Q 005752 642 IPDTAPL-GVYRIRHFGAAKSLLGSTRHFTGSSSAFVV 678 (679)
Q Consensus 642 ip~~~~~-G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v 678 (679)
+|.+.++ +.|+|+.. +...- .....|..|+|
T Consensus 62 ~p~~l~~~~~Y~i~~~-~~~~~-----~~~~~S~~FtI 93 (93)
T PF10342_consen 62 IPSDLPSGGDYFIQIV-NSSNN-----TIYAYSPRFTI 93 (93)
T ss_pred cCCCCCCCCcEEEEEE-ECCCC-----ceEEECccEEC
Confidence 9887664 89999998 43222 23456677765
No 8
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=54.68 E-value=31 Score=31.57 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=37.9
Q ss_pred EEEEeCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeecc
Q 005752 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (679)
Q Consensus 23 lvl~~~~~~rvv~Vs~Dl~~i-~~----~v~~~V~~~L~~~~G~~i~~~nViIsaTHT 75 (679)
|++.. ...++++|.+.+++. .. .+..+|-+.|++.+| +++++|.|.-+=.
T Consensus 49 m~f~g-~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 49 MRFGG-SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred EEECC-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 44444 466999999997664 33 466688888899999 9999999987543
No 9
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=51.34 E-value=33 Score=30.08 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 005752 41 CMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (679)
Q Consensus 41 ~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHSgP~ 80 (679)
.+-+..-+.+|+++|++.++ .+.++|+|-.-+||-|=+
T Consensus 8 ~g~~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 8 PGKPTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SSSSS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 34445668899999999999 899999999999999877
No 10
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=49.65 E-value=30 Score=32.47 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=14.4
Q ss_pred EEEcCCCC-CCcceeEEEe
Q 005752 639 EWRIPDTA-PLGVYRIRHF 656 (679)
Q Consensus 639 ~W~ip~~~-~~G~YRi~~~ 656 (679)
.|-.+..+ .||+|||++-
T Consensus 67 ~~~~~~~tl~~GtYr~~~d 85 (132)
T KOG3006|consen 67 DWVSPDFTLIPGTYRLVFD 85 (132)
T ss_pred ecccchhhhccceEEEEEe
Confidence 48877754 7999999994
No 11
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=41.88 E-value=23 Score=26.96 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.1
Q ss_pred EEEcCCCCCCcceeEEEeecccccCCC
Q 005752 639 EWRIPDTAPLGVYRIRHFGAAKSLLGS 665 (679)
Q Consensus 639 ~W~ip~~~~~G~YRi~~~G~~k~~~g~ 665 (679)
.|-- +.||+|+|......+...|+
T Consensus 6 nW~F---T~PG~Y~l~~~a~~~~~~G~ 29 (41)
T TIGR03769 6 NWVF---TKPGTYTLTVQATATLTDGK 29 (41)
T ss_pred ceee---CCCeEEEEEEEEEEEeCCCc
Confidence 4654 57999999999888777776
No 12
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=41.35 E-value=29 Score=29.29 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=14.0
Q ss_pred EEEEEEE--cCCCCCCcceeEEEe
Q 005752 635 MATIEWR--IPDTAPLGVYRIRHF 656 (679)
Q Consensus 635 ~~~i~W~--ip~~~~~G~YRi~~~ 656 (679)
.++++|. +|.++.+|+|+|...
T Consensus 51 s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 51 SVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp EEEEEEEEEE-TT--SEEEEEEEE
T ss_pred EEEEEEEEECCCCCCCceEEEEEE
Confidence 4555665 588999999999864
No 13
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=37.26 E-value=42 Score=29.28 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCEEEEEEeccC-ccc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 005752 30 GNRVVFVNLDAC-MAS----QIVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (679)
Q Consensus 30 ~~rvv~Vs~Dl~-~i~----~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTH 76 (679)
...+++|.+.+. +=+ +.+...+.++|++++| |++++|+|+-+-++
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~ 75 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENP 75 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECC
Confidence 567788888887 322 3566678888888899 99999999988776
No 14
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=32.28 E-value=3.3e+02 Score=25.23 Aligned_cols=67 Identities=18% Similarity=0.366 Sum_probs=41.2
Q ss_pred CCCeEEEEEEccCCCCCCCCCCCeEEEEEEeCCCCeEEEecCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcceeE
Q 005752 574 RGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRI 653 (679)
Q Consensus 574 ~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~YRi 653 (679)
..|.++.+|.-| |+-.. ..+|.+.+.-- . -.++..|..++.=...+ .++|.=.+|++++=|.|++
T Consensus 48 ~~d~l~l~~~~G-~~P~~-~~gT~~~~~~~-~------~~~~~~W~a~v~~~~~~------~~tv~V~spa~A~VG~y~l 112 (118)
T PF00868_consen 48 SKDQLSLEFETG-PNPSE-SKGTKVVFPVS-S------SLDSSSWSARVESQDGN------SVTVSVTSPANAPVGRYKL 112 (118)
T ss_dssp TTEEEEEEEEES-SS--T-TTTSEEEEEEC-S------SS-TSSSEEEEEEEETT------EEEEEEE--TTS--EEEEE
T ss_pred CCcEEEEEEEEe-ccccc-CCCcEEEEEEc-c------CCCCCCEEEEEEecCCC------EEEEEEECCCCCceEEEEE
Confidence 357888888765 43333 46677777541 1 23567777777665443 4888999999999999998
Q ss_pred EE
Q 005752 654 RH 655 (679)
Q Consensus 654 ~~ 655 (679)
..
T Consensus 113 ~v 114 (118)
T PF00868_consen 113 SV 114 (118)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 15
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=30.27 E-value=96 Score=29.57 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCceeEEEEecCCCCCceeEEEEEE--EcCCCCCCcceeEEEee
Q 005752 615 DDDFCLRFKWSRPSKLSARSMATIEW--RIPDTAPLGVYRIRHFG 657 (679)
Q Consensus 615 D~d~~t~~~W~r~~~~~~~s~~~i~W--~ip~~~~~G~YRi~~~G 657 (679)
...|.....|.... +....++.| .||.++++|.|.|...=
T Consensus 74 ~~~~~~~~~~~~~~---g~~~~~~h~~i~IPa~a~~G~YH~~i~V 115 (132)
T PF15418_consen 74 EKPWVFEQDYDIYG---GKKNYDFHEHIDIPADAPAGDYHFMITV 115 (132)
T ss_pred ccCcEEEEEEcccC---CcccEeEEEeeeCCCCCCCcceEEEEEE
Confidence 45688888885543 333455555 57999999999998753
No 16
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=30.17 E-value=2.5e+02 Score=34.48 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=63.3
Q ss_pred CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCCCCccchhhh-ccccccchhHHHHHHHHH
Q 005752 29 QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYI-VTSLGFVRQSFDALVDGI 107 (679)
Q Consensus 29 ~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHSgP~g~~~~~~~~-i~~~g~~~~y~~~lvd~i 107 (679)
+|+-.+-|.+-..-+.+.....+.+.+++.+| ++.++|-|...-|...|.+...+---. ...+.....-.+.|.+++
T Consensus 475 dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl 552 (768)
T TIGR03196 475 DGTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQL 552 (768)
T ss_pred CCCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Confidence 45545666677777888888999999999999 999999999999988886432111000 111224555666777777
Q ss_pred HHHHHHHHhcCCceEEEEEEEEe
Q 005752 108 EKSVLQAHENLRPGSIFVNKGEL 130 (679)
Q Consensus 108 v~AI~~A~~~l~Pa~l~~g~g~~ 130 (679)
.+.+.+.+ ...|..+.+..+.+
T Consensus 553 ~~~aa~~l-~~~~~~~~~~~g~~ 574 (768)
T TIGR03196 553 KARAAETA-GLPAEVVEAPAENL 574 (768)
T ss_pred HHHHHHHh-CCChhhEEEeCCee
Confidence 65543322 34444455544433
No 17
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=29.72 E-value=1.2e+02 Score=28.07 Aligned_cols=49 Identities=6% Similarity=0.148 Sum_probs=38.0
Q ss_pred EEEEeCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q 005752 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIH 74 (679)
Q Consensus 23 lvl~~~~~~rvv~Vs~Dl~~i-~~----~v~~~V~~~L~~~~G~~i~~~nViIsaTH 74 (679)
+.+.. ...+.+||.+-.++. .. .+...+-+.|.+++| |+.++|.|.-.=
T Consensus 49 m~fgG-s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d 102 (113)
T PTZ00450 49 MSFQG-STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYS 102 (113)
T ss_pred EEEcC-CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEc
Confidence 44544 466999999998885 33 455677888899999 999999998774
No 18
>PF12103 Lipl32: Surface lipoprotein of Spirochaetales order; InterPro: IPR021962 Lipl32 is an outer membrane surface lipoprotein of Leptospira like bacteria. ; PDB: 2ZZ8_A 2WFK_D 3FRL_B.
Probab=26.86 E-value=1e+02 Score=30.51 Aligned_cols=82 Identities=24% Similarity=0.232 Sum_probs=45.6
Q ss_pred CCeEEEEEEccCCCCCCCCCCCeEEEEEEeC----------CC-CeEEEecCCCceeEEEEecCCCCCceeEEEEEEEcC
Q 005752 575 GEMVTVSFWSACPRNDLMTEGTFALVEILHG----------KD-IWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIP 643 (679)
Q Consensus 575 g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~----------~~-~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip 643 (679)
|+-|+-.|-.+-+.+.-.-=+||+++||++- .+ .|+++.+|+|=+-...=.+.+ .-.|...+.=+|+
T Consensus 63 ~dfvs~~f~~~~~~~~~~~FDT~I~leR~~ii~~~~I~~~aK~~~~~~L~~nDD~~e~p~~p~g~--~YNSLlR~~s~i~ 140 (182)
T PF12103_consen 63 GDFVSSAFKAAAQSDKSKYFDTWIRLERLDIIDPEKITKAAKSANWQTLGTNDDGSEMPKNPSGS--KYNSLLRIKSEIS 140 (182)
T ss_dssp TEEE-HHHHHS-HHHHC----EEEEEEEBS-SSGGGHHHHHHS-BSEEEEEESS-TTTEEEESSS--STTEEEEEE---S
T ss_pred cchhhHHHHhhcccchhhcccceEEEeeccccCHhHhhhhhcccceeeeccCCCccccccCcccc--cccceeeeeecCC
Confidence 5555555544444331123469999999862 12 499998776665555555555 4578888887776
Q ss_pred CCC---CCcceeEEEeec
Q 005752 644 DTA---PLGVYRIRHFGA 658 (679)
Q Consensus 644 ~~~---~~G~YRi~~~G~ 658 (679)
.-+ ..|-|||.+.-.
T Consensus 141 nP~KALvrGlYRI~FTty 158 (182)
T PF12103_consen 141 NPTKALVRGLYRIGFTTY 158 (182)
T ss_dssp SS-SSB-SEEEEEEEEES
T ss_pred CchHhhhheeeEeeeEEe
Confidence 543 359999987543
No 19
>PF02014 Reeler: Reeler domain Schematic picture including Reeler domain; InterPro: IPR002861 Extracellular matrix (ECM) proteins play an important role in early cortical development, specifically in the formation of neural connections and in controlling the cyto-architecture of the central nervous system. The product of the reeler gene in mouse is reelin,a large extracellular protein secreted by pioneer neurons that coordinates cell positioning during neurodevelopment []. F-spondin and mindin are a family of matrix-attached adhesion molecules that share structural similarities and overlapping domains of expression. Both F-spondin and mindin promote adhesion and outgrowth of hippocampal embryonic neurons and bind to a putative receptor(s) expressed on both hippocampal and sensory neurons []. This domain of unknown function is found at the N terminus of reelin and F-spondin.; PDB: 2ZOT_B 2ZOU_B 3COO_A.
Probab=23.96 E-value=2.4e+02 Score=26.25 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=39.6
Q ss_pred ccccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEeC------CCCeEEEecC----------CCceeEEEEecCCCCCce
Q 005752 570 TTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHG------KDIWAPAYDD----------DDFCLRFKWSRPSKLSAR 633 (679)
Q Consensus 570 ~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~------~~~W~~v~~D----------~d~~t~~~W~r~~~~~~~ 633 (679)
..|.+|++++|+- +......+ +.|+.-=|... -|.|..+-++ .+.++.-+ ... ...
T Consensus 28 ~~y~pg~~~~Vtl-~~~~~~~F---~GFllqAr~~~~~~~~~vG~f~~~~~~~~~~~~~C~~~~~~avTH--~~~--~~K 99 (132)
T PF02014_consen 28 SSYEPGQTYTVTL-SSSGSSSF---RGFLLQARDANNSSPAPVGTFQLPPDSDTTQLLDCSGGDNNAVTH--SNN--SPK 99 (132)
T ss_dssp SSB-TTBEEEEEE-EETTTEEB---SEEEEEEEETT--SSSBSSEEEES-TTTEEEETTE----EEEEEE--SS---S-B
T ss_pred CeEcCCCEEEEEE-ECCCCCce---eEEEEEEEeCCCCCcccccccCcCCcccceEeecccccccceEEe--cCC--CCc
Confidence 3899999999988 33332333 35554333221 2678766322 12233333 222 345
Q ss_pred eEEEEEEEcCCCCCCcceeEEE
Q 005752 634 SMATIEWRIPDTAPLGVYRIRH 655 (679)
Q Consensus 634 s~~~i~W~ip~~~~~G~YRi~~ 655 (679)
+.+++.|.-|.+.. |...|+.
T Consensus 100 ~~v~~~W~AP~~~~-g~V~fra 120 (132)
T PF02014_consen 100 TSVTFTWTAPADFS-GCVTFRA 120 (132)
T ss_dssp SEEEEEEE--STTS--EEEEEE
T ss_pred cEEEEEEcCCCCCC-ceEEEEE
Confidence 67999999888644 8877764
No 20
>COG1470 Predicted membrane protein [Function unknown]
Probab=23.36 E-value=1.3e+02 Score=34.69 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=31.2
Q ss_pred CceeEEEEecCCCC--CceeEEEEEEEcCCCCCCcceeEEEeecccc
Q 005752 617 DFCLRFKWSRPSKL--SARSMATIEWRIPDTAPLGVYRIRHFGAAKS 661 (679)
Q Consensus 617 d~~t~~~W~r~~~~--~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~ 661 (679)
+|++++.=..-..+ -..-.+.++=++|+++.+|.|||...+.+-.
T Consensus 425 gWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksDq 471 (513)
T COG1470 425 GWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSDQ 471 (513)
T ss_pred cceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeecc
Confidence 36555543321111 1355788888899999999999999997763
No 21
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=22.65 E-value=1.6e+02 Score=26.75 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=37.9
Q ss_pred CEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 005752 31 NRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (679)
Q Consensus 31 ~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHSgP~ 80 (679)
++=+.+.+-.-+-...-+.+|+++|++.++ -+.+.|+|-.-.|+-|-+
T Consensus 16 Rke~~~~v~h~g~~tpsr~eirekLa~~~~--~~~~~vvv~~~~t~fG~g 63 (99)
T PRK01178 16 RREIKFEVYHEGSATPSRKDVRKKLAAMLN--ADKELVVVRKIKTEYGMG 63 (99)
T ss_pred cEEEEEEEEeCCCCCCCHHHHHHHHHHHHC--cCCCEEEEEccCccCCCc
Confidence 333444555555445567899999999999 899999999999999987
No 22
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=21.81 E-value=3e+02 Score=25.65 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=46.1
Q ss_pred cccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEeC-C---CCeEEEecCCCceeEEEEecC-------CCCCceeEEEEE
Q 005752 571 TFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHG-K---DIWAPAYDDDDFCLRFKWSRP-------SKLSARSMATIE 639 (679)
Q Consensus 571 ~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~-~---~~W~~v~~D~d~~t~~~W~r~-------~~~~~~s~~~i~ 639 (679)
.|.+|+.++|+-.+.++ .. =+.|+.--|..+ + |.|...-++ .+++.=--. ......+.+++.
T Consensus 29 ~y~pG~~~~Vtl~~~~~---~~-F~GF~lqAr~~~~~~~vG~f~~~~~~---~tk~~~c~~~~~avtH~~~~~k~~v~~~ 101 (135)
T cd08544 29 SYVPGETYTVTLSGSSP---SP-FRGFLLQARDASSNEPVGTFQLPPDS---GTKLLTCCGSDNAVTHSNNSKKTSVTFT 101 (135)
T ss_pred EECCCCEEEEEEECCCC---Cc-eeEEEEEEEcCCCCcceEEEEeCCCc---ccEEecCCCCCCcceeCCCCCCceeEEE
Confidence 89999999999888776 22 234543324332 1 677655331 111111100 011346789999
Q ss_pred EEcCCCCCCcceeEEEee
Q 005752 640 WRIPDTAPLGVYRIRHFG 657 (679)
Q Consensus 640 W~ip~~~~~G~YRi~~~G 657 (679)
|.-|.+. .|...|+---
T Consensus 102 W~AP~~~-~g~V~F~aTv 118 (135)
T cd08544 102 WTAPSNG-SGCVTFRATV 118 (135)
T ss_pred EECCCCC-CccEEEEEEE
Confidence 9988854 7888887644
No 23
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=21.32 E-value=6.6e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.8
Q ss_pred ccCCCeEEEEEEccCCCCC
Q 005752 572 FRRGEMVTVSFWSACPRND 590 (679)
Q Consensus 572 y~~g~~v~~~F~~a~Prn~ 590 (679)
+.+|...+++|...||++.
T Consensus 9 ~~~Gs~~~vtf~Vp~e~~~ 27 (124)
T cd08523 9 VQVGTNLEVTLSIDEPVNF 27 (124)
T ss_pred ccCCceEEEEEECCCCccC
Confidence 5678888999999999883
No 24
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=20.44 E-value=3.3e+02 Score=30.75 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=32.7
Q ss_pred eEEEEEEEEeCCCCEEEEEEeccCcccH--HHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 005752 18 LRARTFIVAEPQGNRVVFVNLDACMASQ--IVKIKVIERLKARYGDLYTEKNVAISGI 73 (679)
Q Consensus 18 L~ARAlvl~~~~~~rvv~Vs~Dl~~i~~--~v~~~V~~~L~~~~G~~i~~~nViIsaT 73 (679)
=.+||+|+... ..-.+-..+ .-..++.+.+++.+| +++++|++++|
T Consensus 54 ~~~ravvvNSG--------nANA~TG~~G~~da~~~~~~~A~~l~--~~~~~VlvaST 101 (388)
T PF01960_consen 54 GRIRAVVVNSG--------NANACTGEQGLEDAEAMAEAVAEALG--IPPEEVLVAST 101 (388)
T ss_dssp SBEEEEEEEES--------E---S-HHHHHHHHHHHHHHHHHHHT--CHGGGEEEEEE
T ss_pred CceEEEEEccC--------CCCCCCcHHHHHHHHHHHHHHHHHhC--CCcccEEEecc
Confidence 35788888772 233443344 344588999999999 99999999999
No 25
>PRK10301 hypothetical protein; Provisional
Probab=20.02 E-value=4.6e+02 Score=24.55 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=5.4
Q ss_pred CeEEEEE
Q 005752 576 EMVTVSF 582 (679)
Q Consensus 576 ~~v~~~F 582 (679)
+.|+.+|
T Consensus 46 ~~V~L~F 52 (124)
T PRK10301 46 QALTLNF 52 (124)
T ss_pred CEEEEEc
Confidence 5688888
Done!