Query 005752
Match_columns 679
No_of_seqs 230 out of 564
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 06:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005752.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005752hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jmxa3 b.1.18.14 (A:282-363) 56.6 16 0.0011 28.7 7.2 61 571-657 12-72 (82)
2 d2c9qa1 b.1.18.17 (A:1-102) Co 48.7 58 0.0043 25.6 10.1 24 576-604 19-42 (102)
3 d1aoha_ b.2.2.2 (A:) Cohesin d 42.6 89 0.0065 26.0 11.4 89 571-659 10-121 (143)
4 d1ix2a_ b.1.18.17 (A:) Copper 42.3 74 0.0054 25.0 9.7 26 576-606 18-43 (102)
5 d2vn6a1 b.2.2.2 (A:12-152) Coh 41.9 89 0.0065 25.8 10.7 108 571-678 10-139 (141)
6 d1f86a_ b.3.4.1 (A:) Transthyr 41.6 8.9 0.00065 32.2 3.5 39 600-655 23-64 (115)
7 d1vjja1 b.1.18.9 (A:1-140) Tra 36.0 1.2E+02 0.0088 25.6 10.9 69 571-656 46-115 (140)
8 d2bw4a2 b.6.1.3 (A:166-338) Ni 34.6 51 0.0037 29.2 7.8 76 571-660 69-145 (173)
9 d1fnfa3 b.1.2.1 (A:1327-1415) 33.1 27 0.002 26.1 5.1 23 633-656 14-36 (89)
10 d1ko3a_ d.157.1.1 (A:) Zn meta 32.3 25 0.0018 31.2 5.4 48 21-77 39-86 (230)
11 d2ibga1 b.1.2.1 (A:573-667) He 31.9 19 0.0014 27.5 3.9 25 633-657 20-47 (95)
12 d1w8oa1 b.1.18.2 (A:403-505) S 30.9 1.2E+02 0.0087 24.0 9.8 72 570-657 11-84 (103)
13 d1vc1a_ c.13.2.1 (A:) Anti-sig 28.3 41 0.003 26.4 5.6 38 425-462 4-41 (110)
14 d2c9qa1 b.1.18.17 (A:1-102) Co 27.3 40 0.0029 26.7 5.3 15 645-659 73-87 (102)
15 d1yx0a1 d.108.1.1 (A:1-151) Hy 27.2 34 0.0025 29.2 5.1 54 157-211 42-97 (151)
16 d1oo2a_ b.3.4.1 (A:) Transthyr 26.0 11 0.00083 31.5 1.5 41 599-656 23-66 (116)
17 d2gmna1 d.157.1.1 (A:29-292) Z 25.9 49 0.0036 30.2 6.4 48 21-77 28-76 (264)
18 d1x5la1 b.1.2.1 (A:8-105) Ephr 25.7 48 0.0035 25.3 5.4 46 632-678 16-63 (98)
19 d1fnfa2 b.1.2.1 (A:1236-1326) 25.1 40 0.0029 25.1 4.7 6 636-641 17-22 (91)
20 d2fnba_ b.1.2.1 (A:) Fibronect 23.7 20 0.0014 27.3 2.5 9 651-659 73-81 (95)
21 d1hfoa_ d.80.1.3 (A:) Micropha 23.2 43 0.0031 27.2 4.8 47 23-72 47-98 (113)
22 d2aioa1 d.157.1.1 (A:23-311) Z 22.1 44 0.0032 30.6 5.2 48 21-77 38-86 (266)
23 d1x8ha_ d.157.1.1 (A:) Zn meta 21.7 43 0.0032 29.6 4.9 48 21-77 24-71 (228)
24 d1owwa_ b.1.2.1 (A:) Fibronect 21.3 45 0.0033 25.8 4.3 22 635-656 17-38 (93)
25 d1uiza_ d.80.1.3 (A:) Micropha 20.3 53 0.0039 26.7 4.8 47 23-72 48-99 (115)
No 1
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=56.57 E-value=16 Score=28.73 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=38.0
Q ss_pred cccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEeCCCCeEEEecCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcc
Q 005752 571 TFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGV 650 (679)
Q Consensus 571 ~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~ 650 (679)
-.++|.++++++.|.|-.-...++.. +++.. +...+ ...+++.-.|++|+++|.
T Consensus 12 g~q~G~~~evti~G~~L~~~~~l~~G-i~~~~---------------------v~~~~----~~~~~~~v~i~~d~p~G~ 65 (82)
T d1jmxa3 12 FIKAGGESEITLVGSGLAGKPDLGAG-VEVTE---------------------VLEQT----PTLVRLKARAAADAKPGQ 65 (82)
T ss_dssp EEETTCEEEEEEEEESCCSCEECCTT-EEEEE---------------------EEEEC----SSEEEEEEEECTTCCSEE
T ss_pred ccCCCCEEEEEEEecccCCccccCCC-cEEEE---------------------eeecC----CCeEEEEEEECCCCCCCc
Confidence 35789999999999654332222222 11111 11111 235677888999999999
Q ss_pred eeEEEee
Q 005752 651 YRIRHFG 657 (679)
Q Consensus 651 YRi~~~G 657 (679)
|++|...
T Consensus 66 h~vrv~t 72 (82)
T d1jmxa3 66 REVAVGT 72 (82)
T ss_dssp EEEEETT
T ss_pred EEEEEEc
Confidence 9999853
No 2
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=48.70 E-value=58 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=14.1
Q ss_pred CeEEEEEEccCCCCCCCCCCCeEEEEEEe
Q 005752 576 EMVTVSFWSACPRNDLMTEGTFALVEILH 604 (679)
Q Consensus 576 ~~v~~~F~~a~Prn~l~~~~tf~~Ver~~ 604 (679)
+.|+.+|- ..+....+-+.|-...
T Consensus 19 ~~v~L~F~-----e~v~~~~s~~~l~~~~ 42 (102)
T d2c9qa1 19 AKIELHFS-----ENLVTQFSGAKLVMTA 42 (102)
T ss_dssp SSEEEEES-----SCCCTTTCEEEEEEEE
T ss_pred cEEEEEEC-----CccccccceEEEEecC
Confidence 45888882 3444555666665543
No 3
>d1aoha_ b.2.2.2 (A:) Cohesin domain {Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]}
Probab=42.60 E-value=89 Score=26.01 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred cccCCCeEEEEEEccC-CCCCCC-------CCCCeEEEEEEeCC---------CCeEEEecCCCceeEEEEecCCC----
Q 005752 571 TFRRGEMVTVSFWSAC-PRNDLM-------TEGTFALVEILHGK---------DIWAPAYDDDDFCLRFKWSRPSK---- 629 (679)
Q Consensus 571 ~y~~g~~v~~~F~~a~-Prn~l~-------~~~tf~~Ver~~~~---------~~W~~v~~D~d~~t~~~W~r~~~---- 629 (679)
+-++|++|++.-.-.+ |.+++. -+.+.|+|.....+ ..|....++.+-.+.+.|.....
T Consensus 10 ~~~~G~tv~V~V~~~~v~~~~v~~~~~~i~YD~~~Le~~~v~~G~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~~~~g~~ 89 (143)
T d1aoha_ 10 NAKPGDTVRIPVRFSGIPSKGIANCDFVYSYDPNVLEIIEIEPGELIVDPNPTKSFDTAVYPDRKMIVFLFAEDSGTGAY 89 (143)
T ss_dssp EECTTCEEEEEEEEESCCTTCBSEEEEEEECCTTTEEEEEEEECTTCCCSSHHHHEEEEEETTTTEEEEEEECTTSSSTT
T ss_pred EecCCCEEEEEEEEeccCCCceEEEEEEEEECCceeEEeeecccceecCCCCCceeEEEecCCCCeEEEEEeccCCCCcc
Confidence 4567999998776544 444332 37777777654322 14666777777788888876432
Q ss_pred -CCc-eeEEEEEEEcCCCCCCcceeEEEeecc
Q 005752 630 -LSA-RSMATIEWRIPDTAPLGVYRIRHFGAA 659 (679)
Q Consensus 630 -~~~-~s~~~i~W~ip~~~~~G~YRi~~~G~~ 659 (679)
..+ ...++|+-++..++++|+|-|.+.+.+
T Consensus 90 ~i~g~G~iatl~Fkv~~~a~~G~~~i~~~~~~ 121 (143)
T d1aoha_ 90 AITEDGVFATIVAKVKSGAPNGLSVIKFVEVG 121 (143)
T ss_dssp CBCSSEEEEEEEEEECTTCCSEEEEEEEEEEE
T ss_pred eEcCCcEEEEEEEEECCCCCCceEEEEEcccc
Confidence 112 268899999999999999999997644
No 4
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}
Probab=42.30 E-value=74 Score=24.99 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=15.5
Q ss_pred CeEEEEEEccCCCCCCCCCCCeEEEEEEeCC
Q 005752 576 EMVTVSFWSACPRNDLMTEGTFALVEILHGK 606 (679)
Q Consensus 576 ~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~ 606 (679)
++|+.+|= ..++...+-+.|...+++
T Consensus 18 ~~I~L~F~-----e~v~~~~s~i~v~~~~g~ 43 (102)
T d1ix2a_ 18 EKIQLNFS-----ENLTVKFSGAKLTMTGMK 43 (102)
T ss_dssp SCEEEEES-----SCCCGGGCEEEEEEEECT
T ss_pred CEEEEEeC-----CccccccceEEEEeCCCc
Confidence 45888883 345555566666554443
No 5
>d2vn6a1 b.2.2.2 (A:12-152) Cohesin domain {Clostridium cellulolyticum [TaxId: 1521]}
Probab=41.89 E-value=89 Score=25.78 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=67.2
Q ss_pred cccCCCeEEEEEEccCCCC---------CCCCCCCeEEEEEEeCC---CCeEE--EecCCCceeEEEEecCCC----C-C
Q 005752 571 TFRRGEMVTVSFWSACPRN---------DLMTEGTFALVEILHGK---DIWAP--AYDDDDFCLRFKWSRPSK----L-S 631 (679)
Q Consensus 571 ~y~~g~~v~~~F~~a~Prn---------~l~~~~tf~~Ver~~~~---~~W~~--v~~D~d~~t~~~W~r~~~----~-~ 631 (679)
+..+|++|+|...--|..+ .+.-+.+.|++.....+ ..|.. -.+..+=..+|.|....+ . .
T Consensus 10 s~~~G~tV~V~V~~~~v~~~~~i~~~~~~i~yDp~~L~~~~v~~g~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~i~~ 89 (141)
T d2vn6a1 10 NGKPGDTVTVPVTFADVAKMKNVGTCNFYLGYDASLLEVVSVDAGPIVKNAAVNFSSSASNGTISFLFLDNTITDELITA 89 (141)
T ss_dssp EECTTCEEEEEEEEESTTTTTCBCEEEEEEECCTTTEEEEEEEECTTCTTHHHHEEEEEETTEEEEEEECTTSSSSCBCS
T ss_pred EeCCCCEEEEEEEEEccCCCCceEEEEEEEEeCCCeEEEEeeeccccccCCccceEEecCCCEEEEEEEccCCCcceecC
Confidence 4567999998877655432 22335666777654432 22321 123333346788876432 1 2
Q ss_pred ceeEEEEEEEcCCCCCCcceeEEEeeccc---ccCCCceeeEEeccceEE
Q 005752 632 ARSMATIEWRIPDTAPLGVYRIRHFGAAK---SLLGSTRHFTGSSSAFVV 678 (679)
Q Consensus 632 ~~s~~~i~W~ip~~~~~G~YRi~~~G~~k---~~~g~~~~~~g~s~~F~v 678 (679)
....++|+-+++++++.|.|-|...+... .-...+.+....+...+|
T Consensus 90 ~g~ia~l~Fkv~~~a~~G~~~i~~~~~~~~~d~~~~~i~~v~~~~G~ItV 139 (141)
T d2vn6a1 90 DGVFANIKFKLKSVTAKTTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTI 139 (141)
T ss_dssp CEEEEEEEEEECCCSSCEEEEEEEEEEEEEECTTSCBCSCEEEECEEEEE
T ss_pred CcEEEEEEEEECCCCCCceEEEEECCccEEecCCCCeeeeEEecCEEEEE
Confidence 35689999999999999999999877543 223456666666666655
No 6
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.56 E-value=8.9 Score=32.15 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=24.6
Q ss_pred EEEEeCCCCeEEEe---cCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcceeEEE
Q 005752 600 VEILHGKDIWAPAY---DDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRH 655 (679)
Q Consensus 600 Ver~~~~~~W~~v~---~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~YRi~~ 655 (679)
+.++.++|.|+.++ ||+|= ++. +|....+..+|+|||+.
T Consensus 23 L~~~~~~~~~~~i~~~~Td~dG----------------Ri~-~~~~~~~~~~G~Y~l~F 64 (115)
T d1f86a_ 23 VFRKAADDTWEPFASGKTSESG----------------ELH-GLTTEEEFVEGIYKVEI 64 (115)
T ss_dssp EEEECTTSCEEEEEEEECCTTS----------------EEC-CSCCTTTCCSEEEEEEE
T ss_pred EEEECCCCCEEEEEEEEeCCCC----------------ccc-CccCcccCCCeEEEEEE
Confidence 34666677788764 44432 333 45455567889999986
No 7
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=35.96 E-value=1.2e+02 Score=25.60 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=45.5
Q ss_pred cccCCCeEEEEEE-ccCCCCCCCCCCCeEEEEEEeCCCCeEEEecCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCc
Q 005752 571 TFRRGEMVTVSFW-SACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLG 649 (679)
Q Consensus 571 ~y~~g~~v~~~F~-~a~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G 649 (679)
.|.+.|.+..+|. |-.|.- ..+|.+.+.--+. +++.|+-++.=... ..++|.=.+|++++=|
T Consensus 46 ~~~~~d~l~l~~~~Gp~P~~---~~gT~~~~p~~~~--------~~~~W~a~~~~~~~------~~v~v~V~spa~A~VG 108 (140)
T d1vjja1 46 GLGSNERLEFIVSTGPYPSE---SAMTKAVFPLSNG--------SSGGWSAVLQASNG------NTLTISISSPASAPIG 108 (140)
T ss_dssp CCCTTCEEEEEEECSSSCCT---TTTSEEEEEEESS--------CCSSSEEEEEEEET------TEEEEEEECCTTCCCE
T ss_pred CCCCCceEEEEEEeCCCCCc---CCCeEEEEecCCC--------CCCCCEEEEEecCC------CEEEEEEeCCCCCceE
Confidence 4667788888875 444533 3467776653211 35567666553332 3688888999999999
Q ss_pred ceeEEEe
Q 005752 650 VYRIRHF 656 (679)
Q Consensus 650 ~YRi~~~ 656 (679)
.|++...
T Consensus 109 ~y~L~v~ 115 (140)
T d1vjja1 109 RYTMALQ 115 (140)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998874
No 8
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=34.59 E-value=51 Score=29.24 Aligned_cols=76 Identities=14% Similarity=0.008 Sum_probs=46.1
Q ss_pred cccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEeCCCCeEEEecCCCcee-EEEEecCCCCCceeEEEEEEEcCCCCCCc
Q 005752 571 TFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCL-RFKWSRPSKLSARSMATIEWRIPDTAPLG 649 (679)
Q Consensus 571 ~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~d~~t-~~~W~r~~~~~~~s~~~i~W~ip~~~~~G 649 (679)
..+.|++|.+.+.++|....+++ .+. .|..|..|+.+.. --++..+-.+-..+.+.++...+ .||
T Consensus 69 ~akvGErV~i~~~~~n~~s~fHl----------iG~-hFD~V~~~G~~~~~p~~~~qTv~VppG~a~~ve~~f~---~PG 134 (173)
T d2bw4a2 69 TAAVGERVLVVHSQANRDTRPHL----------IGG-HGDYVWATGKFRNPPDLDQETWLIPGGTAGAAFYTFR---QPG 134 (173)
T ss_dssp EEETTCEEEEEEEESSSCBCEEE----------ETC-CEEEEETTCCTTSCCEEEESCCCBCTTEEEEEEEECC---SCE
T ss_pred ccccCCeEEEEecCCCCCcccee----------ccc-eeEEECCCCcccCCCcCCceeEEccCCccEEEEEEec---Cce
Confidence 45789999877755444333322 233 5666777766532 23444444444567788888775 489
Q ss_pred ceeEEEeeccc
Q 005752 650 VYRIRHFGAAK 660 (679)
Q Consensus 650 ~YRi~~~G~~k 660 (679)
+|-++=..-..
T Consensus 135 ~y~~v~H~l~e 145 (173)
T d2bw4a2 135 VYAYVNHNLIE 145 (173)
T ss_dssp EEEEEESSHHH
T ss_pred EEEEEechHHH
Confidence 99988665333
No 9
>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.06 E-value=27 Score=26.09 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=12.6
Q ss_pred eeEEEEEEEcCCCCCCcceeEEEe
Q 005752 633 RSMATIEWRIPDTAPLGVYRIRHF 656 (679)
Q Consensus 633 ~s~~~i~W~ip~~~~~G~YRi~~~ 656 (679)
.+.++|.|+.|.+ +-.-|+|.|.
T Consensus 14 ~~sv~l~W~~p~~-~~~~Y~i~~~ 36 (89)
T d1fnfa3 14 ANSFTVHWIAPRA-TITGYRIRHH 36 (89)
T ss_dssp SSEEEEEEECCSS-CCSEEEEEEE
T ss_pred CCEEEEEEEeCCC-EEeeEEEEEE
Confidence 4456666665542 2345666664
No 10
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}
Probab=32.32 E-value=25 Score=31.20 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=30.8
Q ss_pred EEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 005752 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (679)
Q Consensus 21 RAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHS 77 (679)
-+++|++ ++. .|-+|.+. ......++.+.|.+..| .+.. .|-.||.|.
T Consensus 39 N~~li~~--~~~--~vLID~g~-~~~~~~~~~~~i~~~~~--~~i~--~ii~TH~H~ 86 (230)
T d1ko3a_ 39 NGLIVRD--GDE--LLLIDTAW-GAKNTAALLAEIEKQIG--LPVT--RAVSTHFHD 86 (230)
T ss_dssp EEEEEEE--TTE--EEEESCCS-SHHHHHHHHHHHHTTTC--CCEE--EEECSSSSH
T ss_pred EEEEEEe--CCE--EEEECCCC-CHHHHHHHHHHHHHhcC--CeeE--EEEECCCCc
Confidence 5677776 344 44567654 45567778888887767 4544 444799984
No 11
>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=31.90 E-value=19 Score=27.48 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=12.8
Q ss_pred eeEEEEEEEcCCCCCCc---ceeEEEee
Q 005752 633 RSMATIEWRIPDTAPLG---VYRIRHFG 657 (679)
Q Consensus 633 ~s~~~i~W~ip~~~~~G---~YRi~~~G 657 (679)
.+.++|.|+.|.+...+ -|+|.|.-
T Consensus 20 ~tsv~l~W~~P~~~~~~~i~gY~i~y~~ 47 (95)
T d2ibga1 20 ETAVVLHWSLASDADEHLITGYYAYYRP 47 (95)
T ss_dssp SSCEEEEEECCTTCCGGGCCEEEEEEEE
T ss_pred CCEEEEEEEeeeeccCCcccccceeEee
Confidence 34566666655433222 26666653
No 12
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=30.93 E-value=1.2e+02 Score=24.02 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=40.8
Q ss_pred ccccCCCeEEEEEEccCCCCCCCCCCCeEEEEEEeCCCCeEEEecCCCceeEEEEecCCCCC-c-eeEEEEEEEcCCCCC
Q 005752 570 TTFRRGEMVTVSFWSACPRNDLMTEGTFALVEILHGKDIWAPAYDDDDFCLRFKWSRPSKLS-A-RSMATIEWRIPDTAP 647 (679)
Q Consensus 570 ~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ver~~~~~~W~~v~~D~d~~t~~~W~r~~~~~-~-~s~~~i~W~ip~~~~ 647 (679)
....+|+++++...=-|--+.-.. ..-+.++- -. .|..- +.... +- | ...++++=.+|.++.
T Consensus 11 ~~v~pG~~~~~~vtVtN~g~~~~~-~~~~~~~~--P~-GW~v~-----------~~~~~-L~pG~s~~~~~~Vt~p~~a~ 74 (103)
T d1w8oa1 11 VALEPGQQVTVPVAVTNQSGIAVP-KPSLQLDA--SP-DWQVQ-----------GSVEP-LMPGRQAKGQVTITVPAGTT 74 (103)
T ss_dssp EEECTTCEEEEEEEEECCSSSCBS-SCEEEEEC--CT-TSEEE-----------EEECC-BCTTCEEEEEEEEECCTTCC
T ss_pred eeeCCCCeEEEEEEEEeCCCCcee-eeeEEEcC--CC-Ccccc-----------Cccee-eCCCCcEEEEEEEECCCCCC
Confidence 367789988877766555443333 23344432 23 57641 22221 11 2 334444445588999
Q ss_pred CcceeEEEee
Q 005752 648 LGVYRIRHFG 657 (679)
Q Consensus 648 ~G~YRi~~~G 657 (679)
+|+|+|.-.-
T Consensus 75 ~G~Y~i~~~a 84 (103)
T d1w8oa1 75 PGRYRVGATL 84 (103)
T ss_dssp CEEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 9999998754
No 13
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=28.34 E-value=41 Score=26.42 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=33.8
Q ss_pred EEEEEEEECCEEEEecCCccchHHHHHHHHHHHHHhhh
Q 005752 425 LPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTT 462 (679)
Q Consensus 425 ~~vq~lriG~l~iv~vPgE~tt~~G~rlr~~v~~~~~~ 462 (679)
..+.+.+-.+..|+.+.||++.....++++.+.+.+..
T Consensus 4 ~~~~~~~~~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~ 41 (110)
T d1vc1a_ 4 LKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFIST 41 (110)
T ss_dssp CEEEEEEETTEEEEEEESCBSTTTHHHHHHHHHHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEEhHHHHHHHHHHHHHHhc
Confidence 46788889999999999999999999999999887655
No 14
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=27.28 E-value=40 Score=26.70 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=7.2
Q ss_pred CCCCcceeEEEeecc
Q 005752 645 TAPLGVYRIRHFGAA 659 (679)
Q Consensus 645 ~~~~G~YRi~~~G~~ 659 (679)
..++|+|+|.|+.-+
T Consensus 73 ~l~~G~Y~V~wrvvs 87 (102)
T d2c9qa1 73 PLTAGTYKVDWRAVS 87 (102)
T ss_dssp CCCSEEEEEEEEECC
T ss_pred CCCCceEEEEEEEEe
Confidence 344555555554433
No 15
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}
Probab=27.16 E-value=34 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=40.7
Q ss_pred CCCeeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCc--HHHHHHHHHHHhc
Q 005752 157 VDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDN--KGAAARFMEDWFE 211 (679)
Q Consensus 157 vD~~v~vL~f~~~dG~~ia~L~nyA~HpTsl~~~N~lIS~D~--~G~a~~~lE~~~~ 211 (679)
-+|+..++-+++ ||+++|.+...-..+....-.+..|..++ +|+++++++....
T Consensus 42 ~~~~~~~~va~~-~~~~vG~~~~~~~~~~~~~i~~~~V~p~~Rg~Glg~~Ll~~~~~ 97 (151)
T d1yx0a1 42 RGPEITFWSAWE-GDELAGCGALKELDTRHGEIKSMRTSASHLRKGVAKQVLQHIIE 97 (151)
T ss_dssp SSSSCEEEEEEC-SSSEEEEEEEEEEETTEEECCCCCCSTTTCCSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEEE-CCEEEEEEEEEeccCceEEEEeeeeCHHHHhCChhHHHHHHHHH
Confidence 345677777776 69999998776666655555667899997 8999999987654
No 16
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=26.03 E-value=11 Score=31.54 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=24.1
Q ss_pred EEEEEeCCCCeEEEe---cCCCceeEEEEecCCCCCceeEEEEEEEcCCCCCCcceeEEEe
Q 005752 599 LVEILHGKDIWAPAY---DDDDFCLRFKWSRPSKLSARSMATIEWRIPDTAPLGVYRIRHF 656 (679)
Q Consensus 599 ~Ver~~~~~~W~~v~---~D~d~~t~~~W~r~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~ 656 (679)
++.+++++|.|+.++ ||+|=- +. +|......++|+|||+..
T Consensus 23 ~L~~~~~~g~~~~i~~~~Td~dGR----------------i~-~~~~~~~~~~G~Yel~F~ 66 (116)
T d1oo2a_ 23 KVSQKTADGGWTQIATGVTDATGE----------------IH-NLITEQQFPAGVYRVEFD 66 (116)
T ss_dssp EEEEECTTSCEEEEEEEECCTTSC----------------CT-TCSCGGGCCSEEEEEEEC
T ss_pred EEEEECCCCCeEEEEEEEECCCCc----------------Cc-cccCcccccCeeEEEEEE
Confidence 345666777887664 454421 11 133334457899999875
No 17
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}
Probab=25.86 E-value=49 Score=30.21 Aligned_cols=48 Identities=13% Similarity=0.380 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcE-EEEeeccCC
Q 005752 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNV-AISGIHTHA 77 (679)
Q Consensus 21 RAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nV-iIsaTHTHS 77 (679)
-+++|.. ++.+++ +|.+. . .....+++.|++ .| ++...| .|-.||.|.
T Consensus 28 n~~lI~~--~~~~vL--IDtG~-~-~~~~~~~~~i~~-~~--~~~~~I~~ii~TH~H~ 76 (264)
T d2gmna1 28 AVYVIKT--SQGLIL--MDTAM-P-QSTGMIKDNIAK-LG--FKVADIKLILNTHAHL 76 (264)
T ss_dssp CCEEEEE--TTEEEE--ECCCC-G-GGHHHHHHHHHH-TT--CCGGGEEEEECSCCSH
T ss_pred EEEEEEE--CCEEEE--EcCCC-c-chHHHHHHHHHH-cC--CCchheEEEEECCCCc
Confidence 4567766 344444 68664 2 245678888876 66 666666 677899984
No 18
>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.74 E-value=48 Score=25.32 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=25.1
Q ss_pred ceeEEEEEEEcCCCC--CCcceeEEEeecccccCCCceeeEEeccceEE
Q 005752 632 ARSMATIEWRIPDTA--PLGVYRIRHFGAAKSLLGSTRHFTGSSSAFVV 678 (679)
Q Consensus 632 ~~s~~~i~W~ip~~~--~~G~YRi~~~G~~k~~~g~~~~~~g~s~~F~v 678 (679)
+.+.++|.|..|.+. +--.|+|+|.-.... .....-+.+....|.|
T Consensus 16 s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~-~~~~~~~~~~~~~~~i 63 (98)
T d1x5la1 16 GQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE-MQSYSTLKAVTTRATV 63 (98)
T ss_dssp CSSCEEEEECCCSCCCSCCCEEEEEEEESSSC-CSSCEEEEESSSEEEE
T ss_pred cCCEEEEEEECCCCCCCCEEEEEEEeeccccc-ceeeEEecCCceEEEE
Confidence 456688888866532 123688888643322 1223344555555655
No 19
>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.14 E-value=40 Score=25.08 Aligned_cols=6 Identities=17% Similarity=0.872 Sum_probs=2.2
Q ss_pred EEEEEE
Q 005752 636 ATIEWR 641 (679)
Q Consensus 636 ~~i~W~ 641 (679)
++|.|+
T Consensus 17 v~l~W~ 22 (91)
T d1fnfa2 17 MRVTWA 22 (91)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 333333
No 20
>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.70 E-value=20 Score=27.33 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=4.3
Q ss_pred eeEEEeecc
Q 005752 651 YRIRHFGAA 659 (679)
Q Consensus 651 YRi~~~G~~ 659 (679)
|+|+.....
T Consensus 73 Y~~~V~a~~ 81 (95)
T d2fnba_ 73 YDISVITLI 81 (95)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 555554433
No 21
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=23.23 E-value=43 Score=27.19 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=34.6
Q ss_pred EEEEeCCCCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEe
Q 005752 23 FIVAEPQGNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISG 72 (679)
Q Consensus 23 lvl~~~~~~rvv~Vs~Dl~~-i~~~----v~~~V~~~L~~~~G~~i~~~nViIsa 72 (679)
|.+.. ...+.++|.+=.++ +.++ ...++-+.|++++| |+.++|.|.-
T Consensus 47 m~fgG-s~eP~a~~~l~sig~l~~~~n~~~s~~i~~~l~~~Lg--I~~~RiyI~f 98 (113)
T d1hfoa_ 47 LSFGG-STNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLG--IPKNRMYIHF 98 (113)
T ss_dssp EEETT-BCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEE
T ss_pred EEEcC-CCCcEEEEEEEEecCCChHHhHHHHHHHHHHHHHHcC--CCcceEEEEE
Confidence 34443 35788998887774 6665 44567777888999 9999999964
No 22
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]}
Probab=22.14 E-value=44 Score=30.55 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=31.1
Q ss_pred EEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcE-EEEeeccCC
Q 005752 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNV-AISGIHTHA 77 (679)
Q Consensus 21 RAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nV-iIsaTHTHS 77 (679)
-+++|+. ++..++ +|.+. ....+.+++.|++ .| ++...| .|-.||.|.
T Consensus 38 ~~yli~~--~~g~vL--IDtG~--~~~~~~~~~~l~~-~G--~~~~~I~~Ii~TH~H~ 86 (266)
T d2aioa1 38 TALLVQT--PDGAVL--LDGGM--PQMASHLLDNMKA-RG--VTPRDLRLILLSHAHA 86 (266)
T ss_dssp CCEEEEE--TTEEEE--ECCBS--GGGHHHHHHHHHH-TT--CCGGGEEEEECSCCSH
T ss_pred EEEEEEe--CCEEEE--EeCCC--chhhHHHHHHHHH-cC--CChHHeEEEEecCCCc
Confidence 5778876 344444 48643 2345778888876 67 766666 355699986
No 23
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}
Probab=21.70 E-value=43 Score=29.63 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=28.4
Q ss_pred EEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 005752 21 RTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (679)
Q Consensus 21 RAlvl~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViIsaTHTHS 77 (679)
.++++.. ++.+++ +|.+. .....+++.+.|++..+ -+.. .|-.||.|.
T Consensus 24 N~~~i~~--~~g~vl--ID~g~-~~~~~~~l~~~i~~~~~--~~i~--~ii~TH~H~ 71 (228)
T d1x8ha_ 24 NSMVYFG--AKGVTV--VGATW-TPDTARELHKLIKRVSR--KPVL--EVINTNYHT 71 (228)
T ss_dssp EEEEEEC--SSCEEE--ESCCS-SHHHHHHHHHHHHTTCC--SCEE--EEECSSSSH
T ss_pred eEEEEEE--CCEEEE--EeCCC-CHHHHHHHHHHHHHhcC--CCce--EEEECCCCc
Confidence 4566654 344443 58664 56667788888876433 2222 345689886
No 24
>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.30 E-value=45 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=10.2
Q ss_pred EEEEEEEcCCCCCCcceeEEEe
Q 005752 635 MATIEWRIPDTAPLGVYRIRHF 656 (679)
Q Consensus 635 ~~~i~W~ip~~~~~G~YRi~~~ 656 (679)
.++|.|+.|.+..=-.|+|.|.
T Consensus 17 s~~vsW~~P~~~~i~~Y~i~y~ 38 (93)
T d1owwa_ 17 SHPIQWNAPQPSHISKYILRWR 38 (93)
T ss_dssp CEEEEEECCSSSCEEEEEEEEE
T ss_pred EEEEEeecccccceeEEEEEEe
Confidence 3555555544322233555554
No 25
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=20.29 E-value=53 Score=26.66 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=34.8
Q ss_pred EEEEeCCCCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEe
Q 005752 23 FIVAEPQGNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISG 72 (679)
Q Consensus 23 lvl~~~~~~rvv~Vs~Dl~~-i~~~----v~~~V~~~L~~~~G~~i~~~nViIsa 72 (679)
+.+.. ...+.++|.+=.++ +..+ +..++-+.|++.+| |+.++|.|.-
T Consensus 48 m~fgg-s~~P~a~~~v~siG~l~~~~n~~~s~~i~~~l~~~Lg--I~~~Riyi~f 99 (115)
T d1uiza_ 48 MSFGD-STDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLN--IPANRVYINY 99 (115)
T ss_dssp EEETT-BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEE
T ss_pred EEeCC-CCCcEEEEEEEEEcCCChhhhHHHHHHHHHHHHHHcC--CCcceEEEEE
Confidence 34543 35678888887775 6554 56678888899999 9999999964
Done!