BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005753
(679 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 190/313 (60%), Gaps = 28/313 (8%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL-GPLGEEDPA 169
Y FD V SQ++VY AK +V+ VL+GYNGT+ AYGQT +GKT+T+ G L DP
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL--HDPE 103
Query: 170 TRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGD 225
GI+ R ++DI + S+D + + VSY ++Y++ I+DLLD + N+S+ ED K
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED-KNRV 162
Query: 226 VSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285
+ G T + ++ + G+++R A T +N SSRSH+ +++VK+ +
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALG 345
SG KL +VDLAGSE++ K+G+EG L+EAK+IN SLSALG
Sbjct: 223 LSG--------------------KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262
Query: 346 KCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRA 405
I++LAEGS YVP RDSK+TR+L+DS GG RT++VI PS + ET ST+LFGQRA
Sbjct: 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRA 322
Query: 406 MKVENMLKLKEEF 418
++N + + E
Sbjct: 323 KTIKNTVCVNVEL 335
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 189/313 (60%), Gaps = 28/313 (8%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL-GPLGEEDPA 169
Y FD V SQ++VY AK +V+ VL+GYNGT+ AYGQT +GK +T+ G L DP
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKL--HDPE 103
Query: 170 TRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGD 225
GI+ R ++DI + S+D + + VSY ++Y++ I+DLLD + N+S+ ED K
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED-KNRV 162
Query: 226 VSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285
+ G T + ++ + G+++R A T +N SSRSH+ +++VK+ +
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALG 345
SG KL +VDLAGSE++ K+G+EG L+EAK+IN SLSALG
Sbjct: 223 LSG--------------------KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262
Query: 346 KCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRA 405
I++LAEGS YVP RDSK+TR+L+DS GG RT++VI PS + ET ST+LFGQRA
Sbjct: 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRA 322
Query: 406 MKVENMLKLKEEF 418
++N + + E
Sbjct: 323 KTIKNTVCVNVEL 335
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 185/323 (57%), Gaps = 26/323 (8%)
Query: 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPA 169
++ FD V Q ++ KP V+ +L+GYNGTV AYGQTG GK+YT+ +DP
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 170 TRGIMVRAMEDILAGVSLDTD----SVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGD 225
RG++ R +E I + +V VSY+++YME I+DLL P NDN+ + E+ G
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRG- 166
Query: 226 VSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285
V + G+ + + E+++ G R A T +N ESSRSH+ ++ + +
Sbjct: 167 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQ-------- 218
Query: 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALG 345
K ++ + +L +VDLAGSE++ K+G+ G TLEEAK IN SLSALG
Sbjct: 219 ------------KNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 266
Query: 346 KCINSLAEG-SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQR 404
IN+L +G S++VP RDSKLTR+L++S GG +RT+L+I PS + ET ST+ FG R
Sbjct: 267 MVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMR 326
Query: 405 AMKVENMLKLKEEFDYKSLARRL 427
A ++N K+ E L + L
Sbjct: 327 AKSIKNKAKVNAELSPAELKQML 349
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 224 bits (572), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 185/303 (61%), Gaps = 28/303 (9%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL-GPLGEEDPA 169
Y FD V SQ++VY AK +V+ VL+GYNGT+ AYGQT +GKT+T+ G L DP
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL--HDPE 103
Query: 170 TRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGD 225
GI+ R ++DI + S+D + + VSY ++Y++ I+DLLD + N+S+ ED K
Sbjct: 104 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED-KNRV 162
Query: 226 VSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285
+ G T + ++ + G+++R A T +N SSRSH+ +++VK+ +
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALG 345
SG KL +VDLAGSE++ K+G+EG L+EAK+IN SLSALG
Sbjct: 223 LSG--------------------KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262
Query: 346 KCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRA 405
I++LAEGS YVP RDSK+TR+L+DS GG RT++VI PS + ET ST+LFGQRA
Sbjct: 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRA 322
Query: 406 MKV 408
+
Sbjct: 323 KTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 202/332 (60%), Gaps = 29/332 (8%)
Query: 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL-GPLGEE 166
+ Y FD+V ASQ++VY AK +V VL GYNGT+ AYGQT +GKT+T+ G +G
Sbjct: 50 GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIG-- 107
Query: 167 DPATRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLDPTNDNISIAEDPK 222
D +GI+ R + DI + +++ + + VSY ++YM+ I+DLLD + N+S+ ED K
Sbjct: 108 DSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHED-K 166
Query: 223 TGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGR 282
+ G T + E+++ G+++R A T +N SSRSH+ +++VK+
Sbjct: 167 NRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ----- 221
Query: 283 DVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLS 342
EN N + KL +VDLAGSE++ K+G+EG L+EAK+IN SLS
Sbjct: 222 ------ENLENQKKLS---------GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 266
Query: 343 ALGKCINSLAEGS-AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILF 401
ALG I++LA+G+ ++P RDSKLTR+L++S GG ART++VI P+ + ET ST+ F
Sbjct: 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326
Query: 402 GQRAMKVENMLKLKEEFDYKSLARRLDIQLDK 433
G+RA V+N++ + EE + RR + + +K
Sbjct: 327 GRRAKTVKNVVCVNEELTAEEWKRRYEKEKEK 358
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 185/324 (57%), Gaps = 44/324 (13%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL-GPLGEED 167
+T+ FD V A Q +Y +P+V+SVL G+NGT+ AYGQTGTGKTYT+ G G D
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG--D 125
Query: 168 PATRGIMVRAMEDILAGVSLDTDS---VTVSYLQLYMETIQDLL--DPTNDNISIAEDPK 222
P RG++ + + I +S + V SYL++Y E I+DLL D T + + E P
Sbjct: 126 PEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTK-RLELKERPD 184
Query: 223 TGDVSLPGVTLVEIRDQHSFV--------ELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
TG V ++D SFV ++ +G +R T +N SSRSHA ++
Sbjct: 185 TG---------VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVI- 234
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++E +V GEN +R KL +VDLAGSER K+G++G L+EA
Sbjct: 235 ---TIECSEVGLDGENH-------------IRVGKLNLVDLAGSERQAKTGAQGERLKEA 278
Query: 335 KSINLSLSALGKCINSLAEG-SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRG 393
INLSLSALG I++L +G S ++P RDSKLTRLL+DS GG A+T +V +GP+ +
Sbjct: 279 TKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVE 338
Query: 394 ETASTILFGQRAMKVENMLKLKEE 417
ET +T+ + RA ++N ++ E+
Sbjct: 339 ETLTTLRYANRAKNIKNKPRVNED 362
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 176/310 (56%), Gaps = 24/310 (7%)
Query: 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPA 169
T+ FD V + + ++QA KP++++VL+G+N T+ AYGQTG GKT+T+G EE A
Sbjct: 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGA 116
Query: 170 TRGIMVRAMEDILAGVSLDTDSVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGDVSLP 229
+ I + S V SYL+LY E I+DL+ N + + ED KT + +
Sbjct: 117 IPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKED-KTRGIYVD 174
Query: 230 GVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS--VEGRDVAHS 287
G+++ + L+ G A+R A T++N SSRSH+ MV ++ S +E ++V
Sbjct: 175 GLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEV--- 231
Query: 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKC 347
+R KL +VDLAGSER K+G+ G TL E INLSLSALG
Sbjct: 232 -----------------IRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLV 274
Query: 348 INSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMK 407
I+ L EG+ ++P RDSKLTRLL+DS GG ++T + I P+ + ET ST+ + RA +
Sbjct: 275 ISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQ 334
Query: 408 VENMLKLKEE 417
++N ++ E+
Sbjct: 335 IKNKPRINED 344
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 177/346 (51%), Gaps = 64/346 (18%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+T+ FD V + Q +Y +P+++SVL G+NGTV AYGQTGTGKTYT+ E P
Sbjct: 68 KTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVE-P 126
Query: 169 ATRGIMVRAMEDILAGVSLDTDS---VTVSYLQLYMETIQDLLDP-TNDNISIAEDPKTG 224
RG++ A E I +S + V SYL++Y E I+DLL + + E+P+TG
Sbjct: 127 ELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETG 186
Query: 225 DVSLPGVTLVEIRDQHSFV--------ELLKLGEAHRFAANTKLNTESSRSHAFLMVHVK 276
V I+D SFV ++ LG R +T +N SSRSHA ++ V+
Sbjct: 187 ---------VYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVE 237
Query: 277 RSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSE--------- 327
S G D H +R KL +VDLAGSER +K+G
Sbjct: 238 CSERGSD--------GQDH---------IRVGKLNLVDLAGSERQNKAGPNTAGGAATPS 280
Query: 328 ---------------GHTLEEAKSINLSLSALGKCINSLAEG-SAYVPVRDSKLTRLLRD 371
G +EA INLSLSALG I +LA S ++P RDSKLTRLL+D
Sbjct: 281 SGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQD 340
Query: 372 SFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEE 417
S GG A+T +V T+GP+ E+ ST+ F RA ++N ++ E+
Sbjct: 341 SLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNED 386
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 174/314 (55%), Gaps = 31/314 (9%)
Query: 104 NNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPL 163
N+ + Y+FD E ++Q+ +Y +P++ +L+G N +V+AYG TG GKT+T+ L
Sbjct: 60 NHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM--L 117
Query: 164 GEEDPATRGIMVRAMEDILAGVSLDTD-------SVTVSYLQLYMETIQDLLDPTNDNIS 216
G P G++ RA+ D+L + SVT+SYL++Y E + DLLDP + ++
Sbjct: 118 G--SPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175
Query: 217 IAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVK 276
I ED + G++ +PG++ I F +R T+LN SSRSHA L+V V
Sbjct: 176 IREDCR-GNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVD 234
Query: 277 RSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKS 336
+ + L P R+ KL ++DLAGSE ++G++G L+E+ +
Sbjct: 235 QR-------------------ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGA 275
Query: 337 INLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETA 396
IN SL LGK +++L +G VP RDSKLTRLL+DS GG+A + L+ I P R +T
Sbjct: 276 INTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTV 335
Query: 397 STILFGQRAMKVEN 410
S + F R+ +V N
Sbjct: 336 SALNFAARSKEVIN 349
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNE 123
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 124 EYCWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 241
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 242 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 285
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 345
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 346 TLSTLEYAHRAKNILN 361
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 124 EYTWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 241
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 242 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 285
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 345
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 346 TLSTLEYAHRAKNILN 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 63 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 122
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 123 EYTWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 181
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 182 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 240
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 241 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 284
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 285 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 344
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 345 TLSTLEYAHRAKNILN 360
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 124 EYTWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 241
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 242 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 285
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 345
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 346 TLSTLEYAHRAKNILN 361
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 55 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 114
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 115 EYTWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 173
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 174 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 232
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 233 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 276
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 277 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 336
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 337 TLSTLEYAHRAKNILN 352
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 66 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 125
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 126 EYTWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 184
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 185 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 243
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 244 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 287
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 288 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 347
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 348 TLSTLEYAHRAKNILN 363
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 123
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 124 EYTWEEDPLD-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 183 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 241
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 242 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 285
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 345
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 346 TLSTLEYAHRAKNILN 361
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 176/316 (55%), Gaps = 32/316 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL----GP-- 162
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ P
Sbjct: 49 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE 108
Query: 163 --LGEEDPATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---NI 215
EEDP GI+ R + I ++ + SV VS L++Y E + DLL+P++D +
Sbjct: 109 EYTWEEDPLA-GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 167
Query: 216 SIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
+ +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 168 QMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV- 226
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ ++ GE +V+ KL +VDLAGSE I +SG+ EA
Sbjct: 227 ---TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREA 270
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ + E
Sbjct: 271 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 330
Query: 395 TASTILFGQRAMKVEN 410
T ST+ + RA + N
Sbjct: 331 TLSTLEYAHRAKNILN 346
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 174/317 (54%), Gaps = 34/317 (10%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+TY FD V Q VY++V P+++ V+ GYN T+ AYGQTGTGKT+T+ GE P
Sbjct: 64 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME--GERSP 121
Query: 169 ---------ATRGIMVRAMEDILAGVSLDTD--SVTVSYLQLYMETIQDLLDPTND---N 214
GI+ R + I ++ + SV VS L++Y E + DLL+P++D
Sbjct: 122 NEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER 181
Query: 215 ISIAEDPKTG-DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMV 273
+ + +DP+ V + G+ + + ++ ++L+ G A R A T +N SSRSH+ V
Sbjct: 182 LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 241
Query: 274 HVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEE 333
++ ++ GE +V+ KL +VDLAGSE I +SG+ E
Sbjct: 242 ----TIHMKETTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRARE 284
Query: 334 AKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRG 393
A +IN SL LG+ I +L E + +VP R+SKLTR+L+DS GG RTS++ TI P+ +
Sbjct: 285 AGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLE 344
Query: 394 ETASTILFGQRAMKVEN 410
ET ST+ + RA + N
Sbjct: 345 ETLSTLEYAHRAKNILN 361
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 173/309 (55%), Gaps = 31/309 (10%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG-----PLGE 165
+ F VL E A Q+ VYQA +P++E+ +G+N TV AYGQTG+GKTYT+G L E
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE 111
Query: 166 EDPATRGIMVRAMEDILAGVS----LDTDSVTVSYLQLYMETIQDLLD--PTNDNISIAE 219
++ +GI+ RAM + + LD V VSYL++Y E +DLL+ + +I + E
Sbjct: 112 DE---QGIVPRAMAEAFKLIDENDLLDC-LVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
Query: 220 DPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSV 279
D + G+V L GV V++ + LL++G A R T LN SSRSH V ++
Sbjct: 168 DER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLE--- 223
Query: 280 EGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINL 339
+ G + P + +K VDLAGSER+ K+GS G L+E+ IN
Sbjct: 224 ---------QRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINS 274
Query: 340 SLSALGKCINSLAEG---SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETA 396
SL ALG I++L + +++P RDSK+TR+L+DS GG A+T ++ + PS ET
Sbjct: 275 SLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETL 334
Query: 397 STILFGQRA 405
+T+ + RA
Sbjct: 335 NTLNYASRA 343
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 31/309 (10%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG-----PLGE 165
+ F VL E A Q+ VYQA +P++E+ +G+N TV AYGQTG+GKTYT+G L E
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE 111
Query: 166 EDPATRGIMVRAMEDILAGVS----LDTDSVTVSYLQLYMETIQDLLD--PTNDNISIAE 219
++ +GI+ RAM + + LD V VSYL++Y E +DLL+ + +I + E
Sbjct: 112 DE---QGIVPRAMAEAFKLIDENDLLDC-LVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
Query: 220 DPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSV 279
D + G+V L GV V++ + LL++G A R T LN SSRSH V +K
Sbjct: 168 DER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLK--- 223
Query: 280 EGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINL 339
+ G + P + +K VDLAGSER+ K+GS G +E+ IN
Sbjct: 224 ---------QRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINS 274
Query: 340 SLSALGKCINSLAEG---SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETA 396
SL ALG I++L + + +P RDSK+TR+L+DS GG A+T ++ + PS ET
Sbjct: 275 SLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETL 334
Query: 397 STILFGQRA 405
+T+ + RA
Sbjct: 335 NTLNYASRA 343
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 175/318 (55%), Gaps = 41/318 (12%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEE---- 166
+ FD + Q VY V P++E VL+GYN TV AYGQTGTGKT+T+ +G E
Sbjct: 69 FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM--VGNETAEL 126
Query: 167 -----DPATRGIMVRAMEDILAGVSLDTDSVT--VSYLQLYMETIQDLLDPTNDN--ISI 217
D + GI+ RA+ + + + T +SYL+LY E + DLL T+D I I
Sbjct: 127 KSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLS-TDDTTKIRI 185
Query: 218 AED-PKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAF--LMVH 274
+D K G V + G+ + + + +LL+ G+ R A T +N +SSRSH ++VH
Sbjct: 186 FDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH 245
Query: 275 VKRS-VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSE-GHTLE 332
++ + +EG D+ G KL +VDLAGSE + K+G+E G +
Sbjct: 246 IRENGIEGEDMLKIG--------------------KLNLVDLAGSENVSKAGNEKGIRVR 285
Query: 333 EAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHR 392
E +IN SL LG+ I +L + + +VP R+SKLTRLL++S GG +TS++ TI P +
Sbjct: 286 ETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDI 345
Query: 393 GETASTILFGQRAMKVEN 410
ET ST+ + RA ++N
Sbjct: 346 EETLSTLEYAHRAKNIQN 363
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 179/318 (56%), Gaps = 39/318 (12%)
Query: 120 FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAME 179
+ASQK+VY+ + + +++ +GYN + AYGQTG GK+YT+ +G+++ +GI+ + E
Sbjct: 83 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCE 140
Query: 180 DILAGVSLDTD-----SVTVSYLQLYMETIQDLLDPTND-NISIAEDPKTGDVSLPGVTL 233
D+ + ++ T+ SV VSY+++Y E ++DLL+P N N+ + E P G + ++
Sbjct: 141 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSK 199
Query: 234 VEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHA-FLMVHVKRSVEGRDVAHSGENGN 292
+ + + +L+ G R A T +N SSRSHA F ++ ++ H E
Sbjct: 200 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR-------HDAETNI 252
Query: 293 NSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLA 352
+ V +K+ +VDLAGSER D +G++G L+E +IN SL+ LGK I++LA
Sbjct: 253 TTEKV----------SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 302
Query: 353 E------------GSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
E + ++P RDS LT LLR++ GG +RT++V + P+ + ET ST+
Sbjct: 303 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 362
Query: 401 FGQRAMKVENMLKLKEEF 418
+ RA ++ N + + E
Sbjct: 363 YADRAKQIRNTVSVNLEL 380
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 178/314 (56%), Gaps = 39/314 (12%)
Query: 120 FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAME 179
+ASQK+VY+ + + +++ +GYN + AYGQTG GK+YT+ +G+++ +GI+ + E
Sbjct: 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCE 124
Query: 180 DILAGVSLDTD-----SVTVSYLQLYMETIQDLLDPTND-NISIAEDPKTGDVSLPGVTL 233
D+ + ++ T+ SV VSY+++Y E ++DLL+P N N+ + E P G + ++
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSK 183
Query: 234 VEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHA-FLMVHVKRSVEGRDVAHSGENGN 292
+ + + +L+ G R A T +N SSRSHA F ++ ++ H E
Sbjct: 184 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR-------HDAETNI 236
Query: 293 NSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLA 352
+ V +K+ +VDLAGSER D +G++G L+E +IN SL+ LGK I++LA
Sbjct: 237 TTEKV----------SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 353 E------------GSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
E + ++P RDS LT LLR++ GG +RT++V + P+ + ET ST+
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 401 FGQRAMKVENMLKL 414
+ RA ++ N + +
Sbjct: 347 YADRAKQIRNTVSV 360
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 178/314 (56%), Gaps = 39/314 (12%)
Query: 120 FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAME 179
+ASQK+VY+ + + +++ +GYN + AYGQTG GK+YT+ +G+++ +GI+ + E
Sbjct: 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCE 124
Query: 180 DILAGVSLDTD-----SVTVSYLQLYMETIQDLLDPTND-NISIAEDPKTGDVSLPGVTL 233
D+ + ++ T+ SV VSY+++Y E ++DLL+P N N+ + E P G + ++
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSK 183
Query: 234 VEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHA-FLMVHVKRSVEGRDVAHSGENGN 292
+ + + +L+ G R A T +N SSRSHA F ++ ++ H E
Sbjct: 184 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR-------HDAETNI 236
Query: 293 NSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLA 352
+ V +K+ +VDLAGSER D +G++G L+E +IN SL+ LGK I++LA
Sbjct: 237 TTEKV----------SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 353 E------------GSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
E + ++P RDS LT LLR++ GG +RT++V + P+ + ET ST+
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 401 FGQRAMKVENMLKL 414
+ RA ++ N + +
Sbjct: 347 YADRAKQIRNTVSV 360
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 178/314 (56%), Gaps = 39/314 (12%)
Query: 120 FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAME 179
+ASQK+VY+ + + +++ +GYN + AYGQTG GK+YT+ +G+++ +GI+ + E
Sbjct: 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCE 124
Query: 180 DILAGVSLDTD-----SVTVSYLQLYMETIQDLLDPTND-NISIAEDPKTGDVSLPGVTL 233
D+ + ++ T+ SV VSY+++Y E ++DLL+P N N+ + E P G + ++
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSK 183
Query: 234 VEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHA-FLMVHVKRSVEGRDVAHSGENGN 292
+ + + +L+ G R A T +N SSRSHA F ++ ++ H E
Sbjct: 184 LAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR-------HDAETNI 236
Query: 293 NSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLA 352
+ V +K+ +VDLAGSER D +G++G L+E +IN SL+ LGK I++LA
Sbjct: 237 TTEKV----------SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 353 E------------GSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
E + ++P RDS LT LLR++ GG +RT++V + P+ + ET ST+
Sbjct: 287 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 346
Query: 401 FGQRAMKVENMLKL 414
+ RA ++ N + +
Sbjct: 347 YADRAKQIRNTVSV 360
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 33/310 (10%)
Query: 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEED 167
A+ + +D V A+Q V++ K +V+S +DGYN + AYGQTG+GKT+T+ + +
Sbjct: 46 AKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG-ADSN 103
Query: 168 PATRGIMVRAMEDILAGVSLDTDSVTVSY----LQLYMETIQDLLDPTNDN---ISIAED 220
P G+ RAM ++ + D++ + S ++LY +T+ DLL P + I +D
Sbjct: 104 P---GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160
Query: 221 PKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVE 280
K G VS+ VT+V I +++ G R T +N +SSRSH + V ++ +
Sbjct: 161 SK-GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST-- 217
Query: 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLS 340
L+ + + KL VDLAGSER+ KSGS G+ L+EA+SIN S
Sbjct: 218 ------------------NLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKS 259
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LSALG I++L+ G+ ++P R+ KLT L+ DS GG A+T + + I P+ + ET +++
Sbjct: 260 LSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLT 319
Query: 401 FGQRAMKVEN 410
+ R + N
Sbjct: 320 YASRVRSIVN 329
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 30/302 (9%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
+ FD V E ++Q V++ KP++ S L+GYN TV+AYG TG GKT+T+ LG D
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM--LGSADEP- 130
Query: 171 RGIMVRAMEDILAGVSLDTD----SVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGDV 226
G+M M + + + S VSYL++Y E I+DLL + +++ ED + G V
Sbjct: 131 -GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKG-V 187
Query: 227 SLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAH 286
+ G+TL + + + LL G +R T +N SSRSHA +++++ + +
Sbjct: 188 VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASI-- 245
Query: 287 SGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGK 346
N N VR AK+ ++DLAGSER SG++G E +IN SL ALG
Sbjct: 246 ---NQN------------VRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGN 290
Query: 347 CINSLAEG---SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQ 403
IN+LA+ + ++P R+SKLTRLL+DS GG +T ++ + PS +T +T+ +
Sbjct: 291 VINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYAN 350
Query: 404 RA 405
RA
Sbjct: 351 RA 352
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 33/307 (10%)
Query: 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPA 169
++E D+V + ASQ+ V+Q V + +V S +DG+N + AYGQTG GKTYT+ E +P
Sbjct: 49 SFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE-NP- 105
Query: 170 TRGIMVRAMEDILAGVSLDTD----SVTVSYLQLYMETIQDLL--DPTNDNISIAEDPK- 222
GI RA++ + + V ++TVS ++Y E ++DLL +P + + I P
Sbjct: 106 --GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDG 162
Query: 223 TGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGR 282
+G + +PG+T +++ ++ + G +R T LN SSRSHA L+V +V G
Sbjct: 163 SGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIV----TVRGV 218
Query: 283 DVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLS 342
D + + KL +VDLAGSER+ KSG+EG L EA+ IN SLS
Sbjct: 219 DCSTG----------------LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLS 262
Query: 343 ALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFG 402
ALG I +L +VP R+SKLT LL+DS G ++T +V+ + P ++ ET ++ F
Sbjct: 263 ALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFA 322
Query: 403 QRAMKVE 409
+R VE
Sbjct: 323 ERVRSVE 329
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 167/311 (53%), Gaps = 37/311 (11%)
Query: 105 NWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLG 164
+W +++ D VL + ASQ VY+ VAK VV LDGYNGT+M YGQTG GKTYT+ +G
Sbjct: 71 DW---SFKLDGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM--MG 124
Query: 165 -EEDPATRGIMVRAMEDILAGVS---LDTDSVTVSYLQLYMETIQDLLD------PTNDN 214
E+ RGI+ RA++ + + +V VSYL++Y E++ DLL P+
Sbjct: 125 ATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTP 184
Query: 215 ISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
++I E+P+ V + G+++ + LL GE +R A+ +N SSRSH ++
Sbjct: 185 MTIVENPQ--GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIY 242
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
++ AHS +TL +K+ +VDLAGSER+ KSGSEG L+EA
Sbjct: 243 LE--------AHS----------RTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEA 284
Query: 335 KSINLSLSALGKCINSLAEGSA-YVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRG 393
IN SLS L + I +L + ++P R KLT L+DS GG LV I
Sbjct: 285 TYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLE 344
Query: 394 ETASTILFGQR 404
ET S++ F R
Sbjct: 345 ETLSSLRFASR 355
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 33/305 (10%)
Query: 113 FDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRG 172
+D V ASQ +++ K +V+S +DGYN + AYGQTG+GKT+T+ G E + G
Sbjct: 59 YDRVFDMRASQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTI--YGHE--SNPG 113
Query: 173 IMVRAMEDILAGVSLDTDSVTVSY----LQLYMETIQDLLDPTND---NISIAEDPKTGD 225
+ RA +++ + D+ + S ++LY +T+ DLL P + + I +D K G
Sbjct: 114 LTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSK-GM 172
Query: 226 VSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285
V + VT + I +L+ G R + T +N ESSRSH L V V S++
Sbjct: 173 VFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSV-VIESID----- 226
Query: 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALG 345
L+ + KL VDLAGSER+ KSGS G+ L+EA+SIN SLSALG
Sbjct: 227 --------------LQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALG 272
Query: 346 KCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRA 405
I +L+ G+ ++P R+ KLT L+ DS GG A+T + + + P+ + ET +++L+ R
Sbjct: 273 DVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRV 332
Query: 406 MKVEN 410
+ N
Sbjct: 333 RTIVN 337
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 166/314 (52%), Gaps = 35/314 (11%)
Query: 106 WDAETYEFDEVLTE-FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLG 164
+D + DE + E +A Q V++ + + ++++ DGYN + AYGQTG+GK+YT+ +G
Sbjct: 55 YDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM--MG 112
Query: 165 EEDPATRGIMVRAMEDILAGVSLDTD-----SVTVSYLQLYMETIQDLLDP--TNDNISI 217
D G++ R + + + V VSY+++Y E ++DLLDP + + +
Sbjct: 113 TADQP--GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKV 170
Query: 218 AEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKR 277
E G + G++ + + L+ G R A T +N ESSRSHA + +
Sbjct: 171 REHSVLGPY-VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTH 229
Query: 278 SVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSI 337
++ SGE + KL +VDLAGSER K+G+ G L+E +I
Sbjct: 230 TLYDVKSGTSGE----------------KVGKLSLVDLAGSERATKTGAAGDRLKEGSNI 273
Query: 338 NLSLSALGKCINSLAEGSA------YVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRH 391
N SL+ LG I++LA+ SA +VP RDS LT LL+DS GG ++T++V T+ P+ +
Sbjct: 274 NKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADN 333
Query: 392 RGETASTILFGQRA 405
ET ST+ + RA
Sbjct: 334 YDETLSTLRYADRA 347
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 29/316 (9%)
Query: 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEED 167
++++ FD V + K VY+ +A P+++S + GYNGT+ AYGQT +GKTYT+ +G ED
Sbjct: 43 SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM--MGSED 100
Query: 168 PATRGIMVRAMEDILAGVSLDTDS---VTVSYLQLYMETIQDLLDPTNDN--ISIAEDPK 222
G++ RA+ DI + D + VSY+++Y ETI DLL T + I ED
Sbjct: 101 HL--GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVN 158
Query: 223 TGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGR 282
+V + +T + ++ + GE R TK+N SSRSH R
Sbjct: 159 R-NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIF----------R 207
Query: 283 DVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLS 342
+ S E G S+ ++K + L +VDLAGSER ++G+ G L+E +IN SL
Sbjct: 208 MILESREKGEPSNCEGSVKV-----SHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLF 262
Query: 343 ALGKCINSLAEG--SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LG+ I L++G ++ RDSKLTR+L++S GG A+T ++ TI +P ET + +
Sbjct: 263 ILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTI--TPVSFDETLTALQ 320
Query: 401 FGQRAMKVENMLKLKE 416
F A ++N + E
Sbjct: 321 FASTAKYMKNTPYVNE 336
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 150/310 (48%), Gaps = 41/310 (13%)
Query: 107 DAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG--PLG 164
D + FD SQ +YQA+ P+V+ +L+G+ T +AYGQTGTGK+Y++G P G
Sbjct: 59 DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPG 118
Query: 165 EEDPATRGIMVRAMEDILAGVSL------DTDSVTVSYLQLYMETIQDLLDPTNDNISIA 218
E P GI+ RA+ DI V+ D V S++++Y E DLL T +A
Sbjct: 119 EILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVA 178
Query: 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS 278
+ T + + Q +L+LG +R T +N+ SSRSHA + +HVK
Sbjct: 179 ARCQR-------CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231
Query: 279 VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSIN 338
HS N +VDLAGSE + ++G EG +E +IN
Sbjct: 232 TH-----HSRMN---------------------IVDLAGSEGVRRTGHEGVARQEGVNIN 265
Query: 339 LSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETAST 398
L L ++ K + S+A G +P RDS LT +L+ S + + + I P ET ST
Sbjct: 266 LGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLST 325
Query: 399 ILFGQRAMKV 408
+ FG A K+
Sbjct: 326 LRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 148/307 (48%), Gaps = 41/307 (13%)
Query: 107 DAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG--PLG 164
D + FD SQ +YQA+ P+V+ +L+G+ T +AYGQTGTGK+Y++G P G
Sbjct: 59 DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPG 118
Query: 165 EEDPATRGIMVRAMEDILAGVSL------DTDSVTVSYLQLYMETIQDLLDPTNDNISIA 218
E P GI+ RA+ DI V+ D V S++++Y E DLL T +A
Sbjct: 119 EILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVA 178
Query: 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS 278
+ T + + Q +L+LG +R T +N+ SSRSHA + +HVK
Sbjct: 179 ARCQR-------CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231
Query: 279 VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSIN 338
HS N +VDLAGSE + ++G EG +E +IN
Sbjct: 232 TH-----HSRMN---------------------IVDLAGSEGVRRTGHEGVARQEGVNIN 265
Query: 339 LSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETAST 398
L L ++ K + S+A G +P RDS LT +L+ S + + + I P ET ST
Sbjct: 266 LGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLST 325
Query: 399 ILFGQRA 405
+ FG A
Sbjct: 326 LRFGTSA 332
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 165/323 (51%), Gaps = 57/323 (17%)
Query: 120 FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAME 179
+A+Q+ VY ++ + ++ +GY+ + AYGQTG+GK+YT+ +G D G++ R E
Sbjct: 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM--MGTPDQP--GLIPRTCE 169
Query: 180 DILAGVSLDTD-------SVTVSYLQLYMETIQDLLDPTNDN-----ISIAEDPKTGDVS 227
D+ ++ D +V VSY ++Y E ++DLL P N + + E P G
Sbjct: 170 DLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPY- 228
Query: 228 LPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHS 287
+ +T V +R + +++G+ R A+TK+N SSRSHA + +K+ + H
Sbjct: 229 VKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQ------IHHD 282
Query: 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKC 347
E + + R +++ +VDLAGSER + + G L E +IN SL+ LG+
Sbjct: 283 LETDDTTE----------RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRV 332
Query: 348 INSLAE----------------------GSAYVPVRDSKLTRLLRDSFGGTARTSLVITI 385
I +LA+ ++ VP RDS LT LL+DS GG ++T+++ I
Sbjct: 333 IAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACI 392
Query: 386 GPSPRHRGETASTILFGQRAMKV 408
SP ET ST+ + +A ++
Sbjct: 393 --SPTDYDETLSTLRYADQAKRI 413
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 158/314 (50%), Gaps = 46/314 (14%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD + + K +++ + + +V+S LDGYN + AYGQTG+GKTYT+ G+
Sbjct: 55 FQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD----- 108
Query: 171 RGIMVRAMEDILAGVSLDTD-----SVTVSYLQLYMETIQDLLD--PTNDNISIAEDPKT 223
G++ + I + + + Y+++Y ETI DLL ++DNI D +
Sbjct: 109 -GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQK 167
Query: 224 GDVS---------LPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH 274
D+ + VT +++ +LK R A T+ N SSRSH+ MVH
Sbjct: 168 HDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVH 227
Query: 275 VKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEA 334
+ GR++ H+GE + KL +VDLAGSERI+ S G L E
Sbjct: 228 IN----GRNL-HTGETS---------------QGKLNLVDLAGSERINSSAVTGERLRET 267
Query: 335 KSINLSLSALGKCINSLAE---GSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRH 391
++IN SLS LG I +L G Y+P R+SKLT LL+ S G ++T + + I P P H
Sbjct: 268 QNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNH 327
Query: 392 RGETASTILFGQRA 405
ET +++ F +
Sbjct: 328 ISETLNSLRFASKV 341
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 163/316 (51%), Gaps = 39/316 (12%)
Query: 104 NNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPL 163
NN+ + FD++ S V++ +++ +++ LDG N V AYGQTG+GKT+T+
Sbjct: 425 NNFSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSH- 482
Query: 164 GEEDPATRGIMVRAMEDILAGVSLDTD---SVTV--SYLQLYMETIQDLLDP---TNDNI 215
T G++ +++ I + + S TV ++++Y E I DLL+P N
Sbjct: 483 -----PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKY 537
Query: 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHV 275
I D G ++ V+ ++I+ + +L R A TK N SSRSH+ ++ +
Sbjct: 538 EIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL 597
Query: 276 KRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAK 335
+ G NS ++ L ++DLAGSER++ S +EG L+E +
Sbjct: 598 Q--------------GYNSLTKES------SYGTLNLIDLAGSERLNNSRAEGDRLKETQ 637
Query: 336 SINLSLSALGKCINSL-AEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SLS LG I+SL + ++VP R+SKLT LL+ S GG ++T + + I P + E
Sbjct: 638 AINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNE 697
Query: 395 TASTILFGQRAMKVEN 410
T +++ F A KV N
Sbjct: 698 TINSLRF---ATKVNN 710
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 158/312 (50%), Gaps = 42/312 (13%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL--GPLGEEDP 168
+ FD V + Q V++ +A +V+S LDGY + AYGQTG+GKT+T+ GP G DP
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG--DP 141
Query: 169 ATRGIMVRAMEDI------LAGVSLDTDSVTVSYLQLYMETIQDLLDPTNDNISIAE--- 219
G++ RA+ + L+G T S SY+++Y ET++DLL E
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGW-TYSFVASYVEIYNETVRDLLATGTRKGQGGECEI 200
Query: 220 ---DPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVK 276
P + ++++ V + + LL L +R A T N SSRSH+ + +
Sbjct: 201 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI- 259
Query: 277 RSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEG----HTLE 332
SGE H + L+ A L +VDLAGSER+D + G L
Sbjct: 260 ----------SGE-----HSSRGLQ----CGAPLSLVDLAGSERLDPGLALGPGERERLR 300
Query: 333 EAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHR 392
E ++IN SLS LG I +L+ ++VP R+SKLT LL++S GG+A+ + + I P +
Sbjct: 301 ETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENV 360
Query: 393 GETASTILFGQR 404
E+ +++ F +
Sbjct: 361 SESLNSLRFASK 372
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 42/308 (13%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGP--LGEE 166
+ + FD E AS + VY+ A+P+V+++ +G T AYGQTG+GKT+T+G G+
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 180
Query: 167 DPATRGIMVRAMEDILA--------GVSLDTDSVTVSYLQLYMETIQDLLDPTNDNISIA 218
A++GI A D+ ++L+ V V++ ++Y + DLL+ + +
Sbjct: 181 QNASKGIYAMASRDVFLLKNQPRYRNLNLE---VYVTFFEIYNGKVFDLLNK-KAKLRVL 236
Query: 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS 278
ED + V + G+ + ++++ +G A R + T N+ SSRSHA + ++
Sbjct: 237 EDSRQ-QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-- 293
Query: 279 VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSER-IDKSGSEGHTLEEAKSI 337
+GR H K +VDLAG+ER D S ++ T E I
Sbjct: 294 TKGR--LH---------------------GKFSLVDLAGNERGADTSSADRQTRMEGAEI 330
Query: 338 NLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF-GGTARTSLVITIGPSPRHRGETA 396
N SL AL +CI +L + A+ P R+SKLT++LRDSF G +RT ++ I P T
Sbjct: 331 NKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTL 390
Query: 397 STILFGQR 404
+T+ + R
Sbjct: 391 NTLRYADR 398
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 161/316 (50%), Gaps = 43/316 (13%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYT-LGPLGEEDPA 169
++FD++ + + +++ V + +++S LDGYN + AYGQTG+GKTYT L P PA
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 170 TRGIMVRAMEDILA-GVSLDTDSVTVSYLQLYMETIQDLLD---PTNDN--------ISI 217
T + ++ + A G S V+ ++++Y E I DLL P+ +N I
Sbjct: 135 TINHIFSWIDKLAARGWSY---KVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEI 191
Query: 218 AEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKR 277
D + + +T + + + ++LK R A+T N SSRSH+ ++H++
Sbjct: 192 RHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEG 251
Query: 278 SVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSI 337
EG +GE + L +VDLAGSER++ S G L E +SI
Sbjct: 252 KNEG-----TGEKS---------------QGILNLVDLAGSERLNSSMVVGERLRETQSI 291
Query: 338 NLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
N SLS LG I++L ++P R+SKLT LL+ S G+++T + + I P+ H E
Sbjct: 292 NKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNE 351
Query: 395 TASTILFGQRAMKVEN 410
T +++ F A KV N
Sbjct: 352 TINSLRF---ASKVNN 364
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 42/308 (13%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGP--LGEE 166
+ + FD E AS + VY+ A+P+V+++ +G T AYGQTG+GKT+T+G G+
Sbjct: 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA 160
Query: 167 DPATRGIMVRAMEDILA--------GVSLDTDSVTVSYLQLYMETIQDLLDPTNDNISIA 218
A++GI A D+ + L+ V V++ ++Y + DLL+ + +
Sbjct: 161 QNASKGIYAMASRDVFLLKNQPCYRKLGLE---VYVTFFEIYNGKLFDLLN-KKAKLRVL 216
Query: 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS 278
ED K V + G+ + ++++ +G A R + T N+ SSRSHA + ++
Sbjct: 217 EDGKQ-QVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR-- 273
Query: 279 VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSER-IDKSGSEGHTLEEAKSI 337
+GR K +VDLAG+ER D S ++ T E I
Sbjct: 274 AKGR-----------------------MHGKFSLVDLAGNERGADTSSADRQTRMEGAEI 310
Query: 338 NLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF-GGTARTSLVITIGPSPRHRGETA 396
N SL AL +CI +L + A+ P R+SKLT++LRDSF G +RT ++ TI P T
Sbjct: 311 NKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTL 370
Query: 397 STILFGQR 404
+T+ + R
Sbjct: 371 NTLRYADR 378
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 154/308 (50%), Gaps = 42/308 (13%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGP--LGEE 166
+ + FD E AS + VY+ A+P+V+++ +G T AYGQTG+GKT+T+G G+
Sbjct: 49 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 108
Query: 167 DPATRGIMVRAMEDILA--------GVSLDTDSVTVSYLQLYMETIQDLLDPTNDNISIA 218
A++GI A D+ ++L+ V V++ ++Y + DLL+ + +
Sbjct: 109 QNASKGIYAMASRDVFLLKNQPRYRNLNLE---VYVTFFEIYNGKVFDLLNK-KAKLRVL 164
Query: 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS 278
ED + V + G+ + ++++ +G A R + T N+ SSRSHA + ++
Sbjct: 165 EDSRQ-QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-- 221
Query: 279 VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSER-IDKSGSEGHTLEEAKSI 337
+GR K +VDLAG+ER D S ++ T E I
Sbjct: 222 TKGR-----------------------LHGKFSLVDLAGNERGADTSSADRQTRMEGAEI 258
Query: 338 NLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF-GGTARTSLVITIGPSPRHRGETA 396
N SL AL +CI +L + A+ P R+SKLT++LRDSF G +RT ++ I P T
Sbjct: 259 NKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTL 318
Query: 397 STILFGQR 404
+T+ + R
Sbjct: 319 NTLRYADR 326
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 156/324 (48%), Gaps = 68/324 (20%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD++ + + V++ V + +V+S LDGYN + AYGQTG+GKT+T+ G+
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD----- 163
Query: 171 RGIMVRAMEDILAGVS-LDTDS----VTVSYLQLYMETIQDLLDPTNDNISIAEDPKTG- 224
GI+ + I ++ L T V ++++Y E I DLL N+N ED G
Sbjct: 164 -GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNN---KEDTSIGL 219
Query: 225 -------------------DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265
V L +VEI +LK R A+T N SS
Sbjct: 220 KHEIRHDQETKTTTITNVTSVKLESEEMVEI--------ILKKANKLRSTASTASNEHSS 271
Query: 266 RSHAFLMVHVKRSVEGRDVAHSGENGNN-SHMVKTLKPPIVRKAKLVVVDLAGSERIDKS 324
RSH+ ++H+ SG N +H TL +VDLAGSERI+ S
Sbjct: 272 RSHSIFIIHL-----------SGSNAKTGAHSYGTLN----------LVDLAGSERINVS 310
Query: 325 GSEGHTLEEAKSINLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSL 381
G L E ++IN SLSALG I++L + + ++P R+SKLT LL+ S G ++T +
Sbjct: 311 QVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLM 370
Query: 382 VITIGPSPRHRGETASTILFGQRA 405
+ I PS H ET +++ F +
Sbjct: 371 FVNISPSSSHINETLNSLRFASKV 394
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 146/306 (47%), Gaps = 36/306 (11%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGP--LGEE 166
+T+ FD + A + VY+ A+P+VE++ + T AYGQTG+GKT+T+G G+
Sbjct: 139 QTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN 198
Query: 167 DPATRGIMVRAMEDILAGVSLDTD-----SVTVSYLQLYMETIQDLLDPTNDNISIAEDP 221
++GI A D+ + V ++ ++Y + DLL+ + + ED
Sbjct: 199 QDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-RKTKLRVLEDG 257
Query: 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEG 281
K V + G+ E++ ++L+ +G + R + T N SSRSHA + ++R
Sbjct: 258 KQ-QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK--- 313
Query: 282 RDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSER-IDKSGSEGHTLEEAKSINLS 340
H K ++DLAG+ER D S ++ T E IN S
Sbjct: 314 ----------GKLH------------GKFSLIDLAGNERGADTSSADRQTRLEGAEINKS 351
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF-GGTARTSLVITIGPSPRHRGETASTI 399
L AL +CI +L + P R SKLT++LRDSF G +RT ++ TI P T +T+
Sbjct: 352 LLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTL 411
Query: 400 LFGQRA 405
+ R
Sbjct: 412 RYANRV 417
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 154/324 (47%), Gaps = 68/324 (20%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD++ + + V++ V + +V+S LDGYN + AYGQTG+GKT+T+ G+
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 118
Query: 171 RGIMVRAMEDILAGVS-LDTDS----VTVSYLQLYMETIQDLLDPTNDNISIAEDPKTG- 224
GI+ + I ++ L T V ++++Y E I DLL N+N ED G
Sbjct: 119 -GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGL 174
Query: 225 -------------------DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265
L +VEI +LK R A+T N SS
Sbjct: 175 KHEIRHDQETKTTTITNVTSCKLESEEMVEI--------ILKKANKLRSTASTASNEHSS 226
Query: 266 RSHAFLMVHVKRSVEGRDVAHSGENG-NNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKS 324
RSH+ ++H+ SG N +H TL +VDLAGSERI+ S
Sbjct: 227 RSHSIFIIHL-----------SGSNAKTGAHSYGTLN----------LVDLAGSERINVS 265
Query: 325 GSEGHTLEEAKSINLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSL 381
G L E ++IN SLS LG I++L + + ++P R+SKLT LL+ S G ++T +
Sbjct: 266 QVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLM 325
Query: 382 VITIGPSPRHRGETASTILFGQRA 405
+ I PS H ET +++ F +
Sbjct: 326 FVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 153/323 (47%), Gaps = 66/323 (20%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD++ + + V++ V + +V+S LDGYN + AYGQTG+GKT+T+ G+
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 106
Query: 171 RGIMVRAMEDILAGVS-LDTDS----VTVSYLQLYMETIQDLLDPTNDNISIAEDPKTG- 224
GI+ + I ++ L T V ++++Y E I DLL N+N ED G
Sbjct: 107 -GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGL 162
Query: 225 -------------------DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265
L +VEI +LK R A+T N SS
Sbjct: 163 KHEIRHDQETKTTTITNVTSCKLESEEMVEI--------ILKKANKLRSTASTASNEHSS 214
Query: 266 RSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSG 325
RSH+ ++H+ S + AHS L +VDLAGSERI+ S
Sbjct: 215 RSHSIFIIHLSGS-NAKTGAHS-------------------YGTLNLVDLAGSERINVSQ 254
Query: 326 SEGHTLEEAKSINLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSLV 382
G L E ++IN SLS LG I++L + + ++P R+SKLT LL+ S G ++T +
Sbjct: 255 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 314
Query: 383 ITIGPSPRHRGETASTILFGQRA 405
+ I PS H ET +++ F +
Sbjct: 315 VNISPSSSHINETLNSLRFASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 152/323 (47%), Gaps = 66/323 (20%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD++ + + V++ V + +V+S LDGYN + AYGQTG+GKT+T+ G+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 107
Query: 171 RGIMVRAMEDILAGVS-LDTDS----VTVSYLQLYMETIQDLLDPTNDNISIAEDPKTG- 224
GI+ + I ++ L T V ++++Y E I DLL N+N ED G
Sbjct: 108 -GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGL 163
Query: 225 -------------------DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265
L +VEI +LK R A+T N SS
Sbjct: 164 KHEIRHDQETKTTTITNVTSCKLESEEMVEI--------ILKKANKLRSTASTASNEHSS 215
Query: 266 RSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSG 325
RSH+ ++H+ S + AHS L +VDLAGS RI+ S
Sbjct: 216 RSHSIFIIHLSGS-NAKTGAHS-------------------YGTLNLVDLAGSARINVSQ 255
Query: 326 SEGHTLEEAKSINLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSLV 382
G L E ++IN SLS LG I++L + + ++P R+SKLT LL+ S G ++T +
Sbjct: 256 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 383 ITIGPSPRHRGETASTILFGQRA 405
+ I PS H ET +++ F +
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 153/324 (47%), Gaps = 68/324 (20%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD++ + + V++ V + +V+S LDGYN + AYGQTG+GKT+T+ G+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 107
Query: 171 RGIMVRAMEDILAGVS-LDTDS----VTVSYLQLYMETIQDLLDPTNDNISIAEDPKTG- 224
GI+ + I ++ L T V ++++Y E I DLL N+N ED G
Sbjct: 108 -GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGL 163
Query: 225 -------------------DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265
L +VEI +LK R A+T N SS
Sbjct: 164 KHEIRHDQETKTTTITNVTSCKLESEEMVEI--------ILKKANKLRSTASTASNEHSS 215
Query: 266 RSHAFLMVHVKRSVEGRDVAHSGENG-NNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKS 324
RSH+ ++H+ SG N +H TL +VDLAGSERI+ S
Sbjct: 216 RSHSIFIIHL-----------SGSNAKTGAHSYGTLN----------LVDLAGSERINVS 254
Query: 325 GSEGHTLEEAKSINLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSL 381
G L E ++I SLS LG I++L + + ++P R+SKLT LL+ S G ++T +
Sbjct: 255 QVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLM 314
Query: 382 VITIGPSPRHRGETASTILFGQRA 405
+ I PS H ET +++ F +
Sbjct: 315 FVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 152/323 (47%), Gaps = 66/323 (20%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPAT 170
++FD++ + + V++ V + +V+S LDGYN + AYGQTG+GKT+T+ G+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 107
Query: 171 RGIMVRAMEDILAGVS-LDTDS----VTVSYLQLYMETIQDLLDPTNDNISIAEDPKTG- 224
GI+ + I ++ L T V ++++Y E I DLL N+N ED G
Sbjct: 108 -GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNN---KEDTSIGL 163
Query: 225 -------------------DVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265
L +VEI +LK R A+T N SS
Sbjct: 164 KHEIRHDQETKTTTITNVTSCKLESEEMVEI--------ILKKANKLRSTASTASNEHSS 215
Query: 266 RSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSG 325
SH+ ++H+ S + AHS L +VDLAGSERI+ S
Sbjct: 216 ASHSIFIIHLSGS-NAKTGAHS-------------------YGTLNLVDLAGSERINVSQ 255
Query: 326 SEGHTLEEAKSINLSLSALGKCINSLAEGSA---YVPVRDSKLTRLLRDSFGGTARTSLV 382
G L E ++IN SLS LG I++L + + ++P R+SKLT LL+ S G ++T +
Sbjct: 256 VVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 383 ITIGPSPRHRGETASTILFGQRA 405
+ I PS H ET +++ F +
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 39/302 (12%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+ + FD+V +SQ +++ V+ P+++S LDGYN + AYGQTG+GKTYT+ + P
Sbjct: 100 QIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGV----P 154
Query: 169 ATRGIMVRAMEDILAGV----SLDTD-SVTVSYLQLYMETIQDLLDPTNDNISI--AEDP 221
+ G++ R ++ + + +L + + ++L++Y E + DLL ++ I A++
Sbjct: 155 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 214
Query: 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH-VKRSVE 280
K D+ + +T + D + L+ + +R A+T N SSRSHA + + R E
Sbjct: 215 K-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 273
Query: 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLS 340
++++ N +VDLAGSE S + E K+IN S
Sbjct: 274 KQEISVGSIN---------------------LVDLAGSE----SPKTSTRMTETKNINRS 308
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LS L I +L + ++P R+SKLT LL S GG ++T + I + P E+ ++
Sbjct: 309 LSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLR 368
Query: 401 FG 402
F
Sbjct: 369 FA 370
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 39/302 (12%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+ + FD+V +SQ +++ V+ P+++S LDGYN + AYGQTG+GKTYT+ + P
Sbjct: 114 QIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGV----P 168
Query: 169 ATRGIMVRAMEDILAGV----SLDTD-SVTVSYLQLYMETIQDLLDPTNDNISI--AEDP 221
+ G++ R ++ + + +L + + ++L++Y E + DLL ++ I A++
Sbjct: 169 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 228
Query: 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH-VKRSVE 280
K D+ + +T + D + L+ + +R A+T N SSRSHA + + R E
Sbjct: 229 K-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 287
Query: 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLS 340
++++ N +VDLAGSE S + E K+IN S
Sbjct: 288 KQEISVGSIN---------------------LVDLAGSE----SPKTSTRMTETKNINRS 322
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LS L I +L + ++P R+SKLT LL S GG ++T + I + P E+ ++
Sbjct: 323 LSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLR 382
Query: 401 FG 402
F
Sbjct: 383 FA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 39/302 (12%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+ + FD+V +SQ +++ V+ P+++S LDGYN + AYGQTG+GKTYT+ + P
Sbjct: 106 QIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGV----P 160
Query: 169 ATRGIMVRAMEDILAGV----SLDTD-SVTVSYLQLYMETIQDLLDPTNDNISI--AEDP 221
+ G++ R ++ + + +L + + ++L++Y E + DLL ++ I A++
Sbjct: 161 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 220
Query: 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH-VKRSVE 280
K D+ + +T + D + L+ + +R A+T N SSRSHA + + R E
Sbjct: 221 K-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 279
Query: 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLS 340
++++ N +VDLAGSE S + E K+IN S
Sbjct: 280 KQEISVGSIN---------------------LVDLAGSE----SPKTSTRMTETKNINRS 314
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LS L I +L + ++P R+SKLT LL S GG ++T + I + P E+ ++
Sbjct: 315 LSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLR 374
Query: 401 FG 402
F
Sbjct: 375 FA 376
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 39/302 (12%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+ + FD+V +SQ +++ V+ P+++S LDGYN + AYGQ+G+GKTYT+ + P
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGV----P 157
Query: 169 ATRGIMVRAMEDILAGV----SLDTD-SVTVSYLQLYMETIQDLLDPTNDNISI--AEDP 221
+ G++ R ++ + + +L + + ++L++Y E + DLL ++ I A++
Sbjct: 158 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 217
Query: 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH-VKRSVE 280
K D+ + +T + D + L+ + +R A+T N SSRSHA + + R E
Sbjct: 218 K-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLS 340
++++ N +VDLAGSE S + E K+IN S
Sbjct: 277 KQEISVGSIN---------------------LVDLAGSE----SPKTSTRMTETKNINRS 311
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LS L I +L + ++P R+SKLT LL S GG ++T + I + P E+ ++
Sbjct: 312 LSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLR 371
Query: 401 FG 402
F
Sbjct: 372 FA 373
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 28/216 (12%)
Query: 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL-GPLGEEDPA 169
Y FD VL +Q++VY A AK +V+ VL+GYNGT+ AYGQT +GKT+T+ G L DP
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL--HDPQ 103
Query: 170 TRGIMVRAMEDILAGV-SLDTD---SVTVSYLQLYMETIQDLLDPTNDNISIAEDPKTGD 225
GI+ R DI + S+D + + VSY ++Y++ I+DLLD + N+++ ED K
Sbjct: 104 LMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHED-KNRV 162
Query: 226 VSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285
+ G T + ++++ G+A+R A T +N SSRSH+ ++++K+
Sbjct: 163 PYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQE------- 215
Query: 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERI 321
N K L KL +VDLAGSE++
Sbjct: 216 -------NVETEKKL------SGKLYLVDLAGSEKV 238
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 39/302 (12%)
Query: 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDP 168
+ + FD+V +SQ +++ V+ P+++S LDGYN + AYGQTG+GKTYT+ + P
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGV----P 157
Query: 169 ATRGIMVRAMEDILAGV----SLDTD-SVTVSYLQLYMETIQDLLDPTNDNISI--AEDP 221
+ G++ R ++ + + +L + + ++L++Y E + DLL ++ I A++
Sbjct: 158 ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 217
Query: 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVH-VKRSVE 280
K D+ + +T + D + L+ + +R A+T N SSRSHA + + R E
Sbjct: 218 K-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLS 340
++++ N +VDLAGSE S + E K+I S
Sbjct: 277 KQEISVGSIN---------------------LVDLAGSE----SPKTSTRMTETKNIKRS 311
Query: 341 LSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIL 400
LS L I +L + ++P R+SKLT LL S GG ++T + I + P E+ ++
Sbjct: 312 LSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLR 371
Query: 401 FG 402
F
Sbjct: 372 FA 373
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 150/311 (48%), Gaps = 44/311 (14%)
Query: 109 ETYEF--DEVLTEFASQKRVYQAVAKPVVESVLDGY-NGTV---MAYGQTGTGKTYTL-- 160
E +EF D+V + VY+ KP++ +D Y NG V AYGQTG+GKTYT+
Sbjct: 48 ERHEFIVDKVFDDTVDNFTVYENTIKPLI---IDLYENGCVCSCFAYGQTGSGKTYTMLG 104
Query: 161 -GPLGEEDPATRGIMVRAMEDILAGVSL----DTDSVTVSYLQLYMETIQDLLDPTNDNI 215
P G+ D T GI A DI +++ +T + +S+ ++Y + DLL +
Sbjct: 105 SQPYGQSD--TPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK-MV 161
Query: 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHV 275
+ E+ K +V + + ++ + + + + G R N ESSRSHA L + +
Sbjct: 162 AALENGKK-EVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL 220
Query: 276 KRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSER-IDKSGSEGHTLEEA 334
K D+ N N S K+ +DLAGSER D T +
Sbjct: 221 K------DI-----NKNTSL------------GKIAFIDLAGSERGADTVSQNKQTQTDG 257
Query: 335 KSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGE 394
+IN SL AL +CI ++ ++P RDS+LT++LRD F G +++ ++ I P+ +
Sbjct: 258 ANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQ 317
Query: 395 TASTILFGQRA 405
T +T+ + R
Sbjct: 318 TLNTLRYSSRV 328
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 334 AKSINLSLSALGKCINSLAEGS-AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHR 392
AK+IN SLSALG I++LAEG+ +VP RDSK+TR+L+DS G RT++VI PS +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 393 GETASTILFGQRAMKVENMLKLKEEF 418
ET ST++FGQRA ++N + + E
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLEL 86
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 338 NLSLSALGKCINSLAEGS-AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETA 396
N SLSALG I++LAEG+ +VP RDSK+TR+L+DS GG RT++VI PS + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 397 STILFGQRAMKVENMLKLKEEF 418
ST++FGQRA ++N + + E
Sbjct: 61 STLMFGQRAKTIKNTVSVNLEL 82
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 125 RVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMV 175
R+ V K +E++ YN + YG GTGKT+ L G E RG V
Sbjct: 20 RLAYEVVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNE-AKKRGYRV 68
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 125 RVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMV 175
R+ V K +E++ YN + YG GTGKT+ L G E RG V
Sbjct: 20 RLAYEVVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNE-AKKRGYRV 68
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 125 RVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMV 175
R+ V K +E++ YN + YG GTGKT+ L G E RG V
Sbjct: 19 RLAYEVVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNE-AKKRGYRV 67
>pdb|3BG0|B Chain B, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|C Chain C, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|F Chain F, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|G Chain G, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|B Chain B, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|C Chain C, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|F Chain F, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|G Chain G, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 442
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 445 FENEIERITIEAQN-----QISETERNYADALEKERLKYQKDYMESIKKLEERWKIN 496
+ EIE++TIEA+ QISE+ + DAL DYME WK++
Sbjct: 80 LDKEIEKVTIEARKSNPYPQISESSLLFKDAL---------DYMEKTSSDYNLWKLS 127
>pdb|3IKO|B Chain B, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|E Chain E, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|H Chain H, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
Length = 442
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 445 FENEIERITIEAQN-----QISETERNYADALEKERLKYQKDYMESIKKLEERWKIN 496
+ EIE++TIEA+ QISE+ + DAL DYME WK++
Sbjct: 80 LDKEIEKVTIEARKSNPYPQISESSLLFKDAL---------DYMEKTSSDYNLWKLS 127
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 230 GVTLVEIRDQHSFVE-----LLKLGEAHRFAANTKLNTES---SRSHAFLMVHVKRSVEG 281
G +++I D + F E L L A + A LNTE SRS+ + V+ +V G
Sbjct: 471 GDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTEGVMKSRSNVDMDFEVENAVLG 530
Query: 282 RDVAHSGENGNNSH 295
+D S NNSH
Sbjct: 531 KDFKLSITFRNNSH 544
>pdb|1FIE|A Chain A, Recombinant Human Coagulation Factor Xiii
pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xiii
Length = 731
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 230 GVTLVEIRDQHSFVE-----LLKLGEAHRFAANTKLNTES---SRSHAFLMVHVKRSVEG 281
G +++I D + F E L L A + A LNTE SRS+ + V+ +V G
Sbjct: 471 GDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTEGVMKSRSNVDMDFEVENAVLG 530
Query: 282 RDVAHSGENGNNSH 295
+D S NNSH
Sbjct: 531 KDFKLSITFRNNSH 544
>pdb|1GGT|A Chain A, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1GGT|B Chain B, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 230 GVTLVEIRDQHSFVE-----LLKLGEAHRFAANTKLNTES---SRSHAFLMVHVKRSVEG 281
G +++I D + F E L L A + A LNTE SRS+ + V+ +V G
Sbjct: 471 GDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTEGVMKSRSNVDMDFEVENAVLG 530
Query: 282 RDVAHSGENGNNSH 295
+D S NNSH
Sbjct: 531 KDFKLSITFRNNSH 544
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 387 PSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHERQQKAFE 446
PS +RG I+ +RA++ NML KE F YK + +D+ E ++Q+A
Sbjct: 300 PSNENRGYVLRRII--RRAVRHGNMLGAKETFFYKLVGPLIDVMGSA--GEDLKRQQA-- 353
Query: 447 NEIERITIEAQNQISET-ERNYADALEKERLKYQKDYMES 485
++E++ + Q + T ER A L++E K D ++
Sbjct: 354 -QVEQVLKTEEEQFARTLERGLA-LLDEELAKLSGDTLDG 391
>pdb|3P1G|A Chain A, Crystal Structure Of The Xenotropic Murine Leukemia
Virus-Related Virus (Xmrv) Rnase H Domain
Length = 165
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 243 VELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKP 302
EL+ L +A + A KLN + +AF HV EGR++ N + ++ LK
Sbjct: 66 AELIALTQALKMAEGKKLNVYTDSRYAFATAHVHS--EGREIK------NKNEILALLKA 117
Query: 303 PIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSAL 344
+ K +L ++ G ++ + + + G+ + + + ++ A+
Sbjct: 118 LFLPK-RLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158
>pdb|3V1Q|A Chain A, Crystal Structures Of The Reverse Transcriptase-Associated
Ribonuclease H Domain Of Xenotropic Murine
Leukemia-Virus Related Virus
Length = 167
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 243 VELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKP 302
EL+ L +A + A KLN + +AF HV EGR++ N + ++ LK
Sbjct: 68 AELIALTQALKMAEGKKLNVYTDSRYAFATAHVHS--EGREIK------NKNEILALLKA 119
Query: 303 PIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSAL 344
+ K +L ++ G ++ + + + G+ + + + ++ A+
Sbjct: 120 LFLPK-RLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 160
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 387 PSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHERQQKAFE 446
PS +RG I+ +RA++ NML KE F YK + +D+ E ++Q+A
Sbjct: 300 PSNENRGYVLRRII--RRAVRHGNMLGAKETFFYKLVGPLIDVMGSA--GEDLKRQQA-- 353
Query: 447 NEIERITIEAQNQISET-ERNYADALEKERLKYQKDYMES 485
++E++ + Q + T ER A L++E K D ++
Sbjct: 354 -QVEQVLKTEEEQFARTLERGLA-LLDEELAKLSGDTLDG 391
>pdb|2W91|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D.
pdb|2W92|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D, In Complex With
Nag-Thiazoline
Length = 653
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 416 EEFDYKSLARRLDIQLDKLIAEHERQQKAFENEIERITIEAQNQISETERNY-------- 467
EEFD SLA + I KL EHE K ++ + ++TI +Q ++ ++
Sbjct: 496 EEFDLSSLAGKT-IYAVKLFFEHEGAVKDYQFNLGQLTISDNHQEPQSPTSFSVVKQSLK 554
Query: 468 ----ADALEKERLKYQKDYMESIKKLEERWKI 495
A+A+ + + D+ E +K + WK+
Sbjct: 555 NAQEAEAVVQFKGNKDADFYEVYEKDGDSWKL 586
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,595,300
Number of Sequences: 62578
Number of extensions: 609235
Number of successful extensions: 1973
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1722
Number of HSP's gapped (non-prelim): 90
length of query: 679
length of database: 14,973,337
effective HSP length: 105
effective length of query: 574
effective length of database: 8,402,647
effective search space: 4823119378
effective search space used: 4823119378
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)